##fileformat=VCFv4.1 ##FILTER= ##FILTER= ##FILTER= 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4"> ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##GATKCommandLine= 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4] filterName=[filter] genotypeFilterExpression=[] genotypeFilterName=[] clusterSize=3 clusterWindowSize=10 maskExtension=0 maskName=Mask filterNotInMask=false missingValuesInExpressionsShouldEvaluateAsFailing=false invalidatePreviousFilters=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false",Date="Tue Jan 14 23:39:51 PST 2014",Epoch=1389771591537,Version=2.8-1-g932cd3a> ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[/srv/gs1/projects/cherry/giltae/strains/hugeseq/K11/chrI.recal.bam] read_buffer_size=null phone_home=STANDARD gatk_key=null read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/srv/gs1/projects/cherry/sacCer3/sacCer3.fa nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=CALCULATE_AS_NECESSARY baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 defaultBaseQualities=-1 validation_strictness=LENIENT remove_program_records=false keep_program_records=false unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT pcr_error_rate=1.0E-4 noSLOD=false annotateNDA=false min_base_quality_score=17 max_deletion_fraction=0.05 cap_max_alternate_alleles_for_indels=false min_indel_count_for_genotyping=5 min_indel_fraction_per_sample=0.25 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10 indelGapOpenPenalty=45 indelHaplotypeSize=80 noBandedIndel=false indelDebug=false ignoreSNPAlleles=false allReadsSP=false ignoreLaneInfo=false reference_sample_calls=(RodBinding name= source=UNBOUND) reference_sample_name=null sample_ploidy=2 min_quality_score=1 max_quality_score=40 site_quality_prior=20 min_power_threshold_for_calling=0.95 min_reference_depth=100 exclude_filtered_reference_sites=false heterozygosity=0.001 genotyping_mode=DISCOVERY output_mode=EMIT_VARIANTS_ONLY standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=10.0 alleles=(RodBinding name= source=UNBOUND) max_alternate_alleles=3 dbsnp=(RodBinding name=dbsnp source=/srv/gs1/projects/cherry/giltae/hugeseq_data/snp.d/chrI_SNPs.vcf) comp=[] out=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub debug_file=null metrics_file=null annotation=[DepthOfCoverage, MappingQualityZero] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##reference=file:///srv/gs1/projects/cherry/sacCer3/sacCer3.fa #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT K11 chrI 136 . G A 1609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=110.2250;MLEAC=2;MLEAF=1.00;MQ=24.51;MQ0=2;MQRankSum=-1.274;QD=13.08;ReadPosRankSum=1.618;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:1642,198,0 chrI 177 . G C 1774 filter AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=7.7234;MLEAC=2;MLEAF=1.00;MQ=24.04;MQ0=4;QD=14.31;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1807,213,0 chrI 201 . A T 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.744;DP=44;Dels=0.00;FS=1.392;HaplotypeScore=16.2744;MLEAC=1;MLEAF=0.500;MQ=22.73;MQ0=2;MQRankSum=3.816;QD=0.95;ReadPosRankSum=0.708;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:23,21:44:25:72,0,25 chrI 209 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=16.76;MQ0=0;QD=1.51;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,7:8:6:43,6,0 chrI 286 . A T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=24.5647;MLEAC=2;MLEAF=1.00;MQ=25.13;MQ0=0;QD=0.87;SB=-7.977e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:6:52,6,0 chrI 296 . C T 12.37 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;DP=37;Dels=0.00;FS=34.080;HaplotypeScore=16.3278;MLEAC=1;MLEAF=0.500;MQ=22.32;MQ0=0;MQRankSum=-1.170;QD=0.33;ReadPosRankSum=-0.896;SB=-5.706e+01 GT:AD:DP:GQ:PL 0/1:19,18:37:13:42,0,13 chrI 305 . C G 45.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744;DP=47;Dels=0.00;FS=17.629;HaplotypeScore=14.1839;MLEAC=1;MLEAF=0.500;MQ=21.93;MQ0=0;MQRankSum=1.446;QD=0.96;ReadPosRankSum=0.392;SB=-3.252e+02 GT:AD:DP:GQ:PL 0/1:9,38:47:10:75,0,10 chrI 328 . C T 283.09 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.918;DP=76;Dels=0.00;FS=8.431;HaplotypeScore=8.3691;MLEAC=1;MLEAF=0.500;MQ=22.61;MQ0=0;MQRankSum=2.345;QD=3.72;ReadPosRankSum=-1.283;SB=-5.081e+02 GT:AD:DP:GQ:PL 0/1:13,63:76:14:313,0,14 chrI 344 . A C 61.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.599;DP=93;Dels=0.00;FS=57.122;HaplotypeScore=17.8828;MLEAC=1;MLEAF=0.500;MQ=22.12;MQ0=0;MQRankSum=4.685;QD=0.66;ReadPosRankSum=-0.214;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,15:93:91:91,0,257 chrI 349 . C T 416 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=44.9074;MLEAC=2;MLEAF=1.00;MQ=22.06;MQ0=0;QD=4.29;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:57:449,57,0 chrI 353 . C T 203.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.875;DP=99;Dels=0.00;FS=70.698;HaplotypeScore=45.5410;MLEAC=1;MLEAF=0.500;MQ=21.45;MQ0=0;MQRankSum=5.276;QD=2.05;ReadPosRankSum=3.147;SB=-1.720e+02 GT:AD:DP:GQ:PL 0/1:51,48:99:99:233,0,114 chrI 355 . C T 121.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.795;DP=98;Dels=0.00;FS=10.387;HaplotypeScore=50.7632;MLEAC=1;MLEAF=0.500;MQ=21.36;MQ0=0;MQRankSum=2.459;QD=1.23;ReadPosRankSum=2.915;SB=-1.730e+02 GT:AD:DP:GQ:PL 0/1:64,34:98:99:151,0,252 chrI 356 . G A 394.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.658;DP=98;Dels=0.00;FS=15.376;HaplotypeScore=50.7632;MLEAC=2;MLEAF=1.00;MQ=21.36;MQ0=0;MQRankSum=2.552;QD=4.03;ReadPosRankSum=-0.764;SB=-6.566e+02 GT:AD:DP:GQ:PL 1/1:12,86:98:4:425,4,0 chrI 358 . G A 491 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.161;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=49.2406;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=0;MQRankSum=1.411;QD=5.06;ReadPosRankSum=-0.732;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:66:524,66,0 chrI 373 . T C 297.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.166;DP=104;Dels=0.00;FS=218.760;HaplotypeScore=102.8525;MLEAC=1;MLEAF=0.500;MQ=20.51;MQ0=0;MQRankSum=3.707;QD=2.86;ReadPosRankSum=0.807;SB=-3.021e+00 GT:AD:DP:GQ:PL 0/1:59,45:104:27:327,0,27 chrI 374 . T G 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.095;DP=106;Dels=0.00;FS=41.642;HaplotypeScore=103.6411;MLEAC=1;MLEAF=0.500;MQ=20.58;MQ0=0;MQRankSum=3.995;QD=0.32;ReadPosRankSum=1.797;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,11:106:64:64,0,287 chrI 375 . A G 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.272;DP=108;Dels=0.00;FS=52.669;HaplotypeScore=103.6411;MLEAC=1;MLEAF=0.500;MQ=20.52;MQ0=0;MQRankSum=3.482;QD=0.41;ReadPosRankSum=1.893;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,11:108:74:74,0,206 chrI 377 . A C 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.410;DP=106;Dels=0.00;FS=240.964;HaplotypeScore=88.5061;MLEAC=1;MLEAF=0.500;MQ=20.58;MQ0=0;MQRankSum=-5.019;QD=0.35;ReadPosRankSum=0.270;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:43,63:106:67:67,0,315 chrI 382 . C T 174.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;DP=110;Dels=0.00;FS=177.860;HaplotypeScore=92.3721;MLEAC=1;MLEAF=0.500;MQ=20.52;MQ0=0;MQRankSum=7.149;QD=1.58;ReadPosRankSum=1.216;SB=0.259 GT:AD:DP:GQ:PL 0/1:79,31:110:99:204,0,154 chrI 394 . T C 233.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.571;DP=91;Dels=0.00;FS=190.463;HaplotypeScore=26.3280;MLEAC=1;MLEAF=0.500;MQ=20.95;MQ0=0;MQRankSum=6.426;QD=2.56;ReadPosRankSum=-4.297;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:62,29:91:70:263,0,70 chrI 402 . C A 64.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.399;DP=84;Dels=0.00;FS=10.347;HaplotypeScore=104.6771;MLEAC=1;MLEAF=0.500;MQ=20.72;MQ0=0;MQRankSum=-1.469;QD=0.76;ReadPosRankSum=2.741;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:16,13:84:94:94,0,109 chrI 414 . C T 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.129;DP=56;Dels=0.00;FS=37.199;HaplotypeScore=85.9498;MLEAC=2;MLEAF=1.00;MQ=19.05;MQ0=0;MQRankSum=-3.038;QD=0.77;ReadPosRankSum=2.720;SB=-8.198e+01 GT:AD:DP:GQ:PL 1/1:4,52:56:9:75,9,0 chrI 419 . T A 53.57 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=10.5438;MLEAC=1;MLEAF=0.500;MQ=17.71;MQ0=0;QD=1.19;SB=8.42 GT:AD:DP:GQ:PL 1/1:0,43:45:12:86,12,0 chrI 421 . T G 97.13 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=12.4246;MLEAC=2;MLEAF=1.00;MQ=17.71;MQ0=0;QD=2.16;SB=-4.914e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:18:130,18,0 chrI 422 . A G 75.28 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.216;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=12.4246;MLEAC=1;MLEAF=0.500;MQ=17.71;MQ0=0;MQRankSum=-0.852;QD=1.67;ReadPosRankSum=-0.019;SB=3.79 GT:AD:DP:GQ:PL 1/1:5,38:45:15:108,15,0 chrI 424 . G A 75.28 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=13.3979;MLEAC=1;MLEAF=0.500;MQ=17.71;MQ0=0;QD=1.67;SB=3.71 GT:AD:DP:GQ:PL 1/1:0,43:45:15:108,15,0 chrI 430 . A C 75.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.128;DP=44;Dels=0.00;FS=16.537;HaplotypeScore=10.4807;MLEAC=2;MLEAF=1.00;MQ=17.72;MQ0=0;MQRankSum=-1.380;QD=1.71;ReadPosRankSum=0.610;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:7,37:44:15:108,15,0 chrI 509 . G A 584.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.077;DP=74;Dels=0.00;FS=37.665;HaplotypeScore=56.2065;MLEAC=1;MLEAF=0.500;MQ=24.77;MQ0=0;MQRankSum=3.208;QD=7.89;ReadPosRankSum=6.279;SB=-9.301e+01 GT:AD:DP:GQ:PL 0/1:32,33:74:99:614,0,373 chrI 517 . A G 522.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.396;DP=77;Dels=0.00;FS=48.314;HaplotypeScore=46.3474;MLEAC=1;MLEAF=0.500;MQ=24.47;MQ0=0;MQRankSum=5.170;QD=6.78;ReadPosRankSum=0.619;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:45,31:77:99:552,0,458 chrI 540 . G A 370.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.019;DP=74;Dels=0.00;FS=15.075;HaplotypeScore=4.8282;MLEAC=1;MLEAF=0.500;MQ=24.17;MQ0=1;MQRankSum=-0.017;QD=5.00;ReadPosRankSum=4.244;SB=-1.250e+02 GT:AD:DP:GQ:PL 0/1:44,30:74:99:400,0,476 chrI 546 . C A 391.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.880;DP=56;Dels=0.00;FS=15.099;HaplotypeScore=7.7313;MLEAC=1;MLEAF=0.500;MQ=22.40;MQ0=1;MQRankSum=0.582;QD=6.98;ReadPosRankSum=4.392;SB=-1.470e+02 GT:AD:DP:GQ:PL 0/1:27,29:56:99:421,0,185 chrI 552 . C T 354.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.276;DP=67;Dels=0.00;FS=2.555;HaplotypeScore=7.7313;MLEAC=1;MLEAF=0.500;MQ=20.02;MQ0=1;MQRankSum=3.010;QD=5.28;ReadPosRankSum=5.232;SB=-1.470e+02 GT:AD:DP:GQ:PL 0/1:38,29:67:99:384,0,292 chrI 574 . C T 628.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.547;DP=114;Dels=0.00;FS=47.149;HaplotypeScore=4.1126;MLEAC=1;MLEAF=0.500;MQ=18.29;MQ0=9;MQRankSum=-1.823;QD=5.51;ReadPosRankSum=0.625;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,61:114:99:658,0,476 chrI 588 . C A 150.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.535;DP=95;Dels=0.00;FS=36.604;HaplotypeScore=5.0284;MLEAC=1;MLEAF=0.500;MQ=16.66;MQ0=10;MQRankSum=0.585;QD=1.58;ReadPosRankSum=-4.567;SB=-1.250e+02 GT:AD:DP:GQ:PL 0/1:63,32:95:99:180,0,700 chrI 595 . C G 963 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=16.64;MQ0=10;QD=10.58;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:996,137,0 chrI 610 . G A 942 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.98;MQ0=9;QD=12.73;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:975,134,0 chrI 627 . C T 706.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.533;DP=79;Dels=0.00;FS=13.778;HaplotypeScore=14.5411;MLEAC=1;MLEAF=0.500;MQ=17.79;MQ0=9;MQRankSum=-3.136;QD=8.94;ReadPosRankSum=2.602;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:17,62:79:82:736,0,82 chrI 654 . C T 298 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.771;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=25.90;MQ0=1;MQRankSum=1.542;QD=13.55;ReadPosRankSum=0.000;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,18:22:39:331,39,0 chrI 658 . A G 256.17 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.827;DP=21;Dels=0.00;FS=10.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=1;MQRankSum=2.205;QD=12.20;ReadPosRankSum=0.945;SB=-1.764e-01 GT:AD:DP:GQ:PL 1/1:3,18:21:17:289,17,0 chrI 662 . C T 270.17 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.189;DP=21;Dels=0.00;FS=10.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=1;MQRankSum=2.205;QD=12.87;ReadPosRankSum=1.575;SB=-1.764e-01 GT:AD:DP:GQ:PL 1/1:3,18:21:17:303,17,0 chrI 663 . A C 252.17 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.205;DP=21;Dels=0.00;FS=10.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=1;MQRankSum=2.205;QD=12.01;ReadPosRankSum=1.827;SB=-1.764e-01 GT:AD:DP:GQ:PL 1/1:3,18:21:17:285,17,0 chrI 672 . A G 343 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.333;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=1;MQRankSum=1.600;QD=12.70;ReadPosRankSum=1.467;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:1,26:27:45:376,45,0 chrI 681 . G A 360 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=13.85;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,25:26:45:393,45,0 chrI 685 . C T 350 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.462;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;MQRankSum=1.617;QD=11.67;ReadPosRankSum=1.155;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:1,29:30:45:383,45,0 chrI 693 . T A 373 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=11.30;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:48:406,48,0 chrI 701 . C A 389 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=28.32;MQ0=0;QD=12.16;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:48:422,48,0 chrI 718 . G T 231.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.400;DP=36;Dels=0.00;FS=29.117;HaplotypeScore=3.5938;MLEAC=1;MLEAF=0.500;MQ=27.15;MQ0=0;MQRankSum=0.756;QD=6.42;ReadPosRankSum=3.400;SB=0.037 GT:AD:DP:GQ:PL 0/1:11,25:36:99:261,0,121 chrI 728 . C A 125.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.716;DP=36;Dels=0.00;FS=33.860;HaplotypeScore=8.6519;MLEAC=1;MLEAF=0.500;MQ=26.58;MQ0=0;MQRankSum=1.736;QD=3.47;ReadPosRankSum=1.347;SB=4.350e-03 GT:AD:DP:GQ:PL 0/1:14,22:36:99:155,0,146 chrI 738 . C A 318 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=8.6519;MLEAC=2;MLEAF=1.00;MQ=25.71;MQ0=0;QD=9.64;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:42:351,42,0 chrI 743 . A T 131.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530;DP=33;Dels=0.00;FS=37.485;HaplotypeScore=5.7386;MLEAC=1;MLEAF=0.500;MQ=25.71;MQ0=0;MQRankSum=-0.755;QD=3.97;ReadPosRankSum=3.172;SB=-5.098e+01 GT:AD:DP:GQ:PL 0/1:17,15:33:89:161,0,89 chrI 773 . T C 136.11 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;DP=24;Dels=0.00;FS=16.333;HaplotypeScore=9.6260;MLEAC=1;MLEAF=0.500;MQ=22.01;MQ0=0;MQRankSum=1.854;QD=5.67;ReadPosRankSum=0.579;SB=-5.261e+01 GT:AD:DP:GQ:PL 0/1:13,11:24:13:166,0,13 chrI 811 . G T 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.77;MQ0=0;QD=0.93;SB=-1.773e+00 GT:AD:DP:GQ:PL 1/1:0,17:17:6:47,6,0 chrI 812 . C G 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.77;MQ0=0;QD=0.93;SB=-1.773e+00 GT:AD:DP:GQ:PL 1/1:0,17:17:6:47,6,0 chrI 814 . A G 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.77;MQ0=0;QD=0.93;SB=-1.773e+00 GT:AD:DP:GQ:PL 1/1:0,17:17:6:47,6,0 chrI 825 . G A 34.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.727;DP=37;Dels=0.00;FS=5.682;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.45;MQ0=0;MQRankSum=2.890;QD=0.92;ReadPosRankSum=-2.069;SB=-2.184e-01 GT:AD:DP:GQ:PL 0/1:10,27:37:10:64,0,10 chrI 831 . C T 136.06 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.47;MQ0=0;QD=3.09;SB=-2.207e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:21:169,21,0 chrI 845 . C G 241 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.998;DP=60;Dels=0.00;FS=10.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=26.76;MQ0=0;MQRankSum=3.092;QD=4.02;ReadPosRankSum=1.441;SB=-8.125e-03 GT:AD:DP:GQ:PL 1/1:6,54:60:33:274,33,0 chrI 848 . C A 314 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=26.97;MQ0=0;QD=5.15;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,56:61:42:347,42,0 chrI 855 . G A 353 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.500;DP=67;Dels=0.00;FS=13.490;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;MQRankSum=2.350;QD=5.27;ReadPosRankSum=0.864;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:3,64:67:45:386,45,0 chrI 857 . A C 334 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.478;DP=66;Dels=0.00;FS=15.185;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=0;MQRankSum=1.926;QD=5.06;ReadPosRankSum=0.430;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:2,64:66:45:367,45,0 chrI 876 . T C 508 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=0;QD=5.08;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,100:100:66:541,66,0 chrI 878 . T C 525 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.317;DP=102;Dels=0.00;FS=32.348;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;MQRankSum=0.812;QD=5.15;ReadPosRankSum=2.377;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:3,99:102:69:558,69,0 chrI 904 . G A 750 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9256;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=5.77;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,130:130:87:783,87,0 chrI 907 . A T 658 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.899;DP=135;Dels=0.00;FS=39.499;HaplotypeScore=3.9256;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;MQRankSum=-0.064;QD=4.87;ReadPosRankSum=-0.321;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:2,132:135:60:691,60,0 chrI 925 . T C 563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=27.12;MQ0=1;MQRankSum=1.928;QD=3.99;ReadPosRankSum=2.950;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:3,138:141:72:596,72,0 chrI 929 . A C 553 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.10;MQ0=1;QD=3.95;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,140:140:72:586,72,0 chrI 956 . C T 259.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.695;DP=175;Dels=0.00;FS=24.500;HaplotypeScore=15.0884;MLEAC=1;MLEAF=0.500;MQ=23.26;MQ0=1;MQRankSum=8.027;QD=1.48;ReadPosRankSum=2.458;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:74,101:175:99:289,0,739 chrI 961 . A T 160.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.785;DP=175;Dels=0.00;FS=20.383;HaplotypeScore=17.0702;MLEAC=1;MLEAF=0.500;MQ=22.60;MQ0=1;MQRankSum=8.328;QD=0.91;ReadPosRankSum=-4.234;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:81,94:175:99:190,0,754 chrI 968 . C T 777.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.161;DP=170;Dels=0.00;FS=48.230;HaplotypeScore=22.8344;MLEAC=1;MLEAF=0.500;MQ=22.07;MQ0=1;MQRankSum=-7.366;QD=4.57;ReadPosRankSum=6.846;SB=-3.400e+02 GT:AD:DP:GQ:PL 0/1:82,88:170:99:807,0,127 chrI 971 . T C 706.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-9.534;DP=169;Dels=0.00;FS=25.808;HaplotypeScore=26.2061;MLEAC=1;MLEAF=0.500;MQ=21.81;MQ0=1;MQRankSum=-5.063;QD=4.18;ReadPosRankSum=7.727;SB=-2.400e+02 GT:AD:DP:GQ:PL 0/1:94,75:169:99:736,0,182 chrI 990 . G C 792 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.119;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.1476;MLEAC=2;MLEAF=1.00;MQ=15.74;MQ0=4;MQRankSum=-2.574;QD=6.29;ReadPosRankSum=3.837;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:21,105:126:95:825,95,0 chrI 1008 . A G 849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=6.579;HaplotypeScore=7.6276;MLEAC=2;MLEAF=1.00;MQ=14.21;MQ0=3;MQRankSum=-1.439;QD=6.43;ReadPosRankSum=2.412;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:2,130:132:99:882,119,0 chrI 1013 . T C 721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.376;DP=138;Dels=0.00;FS=5.470;HaplotypeScore=6.8390;MLEAC=2;MLEAF=1.00;MQ=14.38;MQ0=3;MQRankSum=-1.528;QD=5.22;ReadPosRankSum=5.698;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:22,116:138:46:754,46,0 chrI 1042 . T C 1785 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-7.090;DP=166;Dels=0.00;FS=82.116;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=24.42;MQ0=4;MQRankSum=9.631;QD=10.75;ReadPosRankSum=-3.484;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:59,107:166:99:1818,222,0 chrI 1065 . A T 4138.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.309;DP=255;Dels=0.00;FS=87.776;HaplotypeScore=13.5290;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=4;MQRankSum=10.001;QD=16.23;ReadPosRankSum=2.938;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:41,214:255:99:4138,480,0 chrI 1204 . A G 76.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;DP=189;Dels=0.00;FS=65.546;HaplotypeScore=14.5360;MLEAC=1;MLEAF=0.500;MQ=16.69;MQ0=9;MQRankSum=4.608;QD=0.40;ReadPosRankSum=-3.144;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:180,9:189:99:106,0,664 chrI 1209 . A T 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.263;DP=187;Dels=0.00;FS=6.658;HaplotypeScore=12.1700;MLEAC=1;MLEAF=0.500;MQ=16.91;MQ0=8;MQRankSum=4.601;QD=0.46;ReadPosRankSum=-3.376;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:177,10:187:99:116,0,682 chrI 1223 . G T 293.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;DP=174;Dels=0.00;FS=21.423;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=17.90;MQ0=8;MQRankSum=1.711;QD=1.68;ReadPosRankSum=-1.762;SB=-3.007e+00 GT:AD:DP:GQ:PL 0/1:137,37:174:99:323,0,529 chrI 1224 . A G 268.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.759;DP=176;Dels=0.00;FS=21.534;HaplotypeScore=2.2424;MLEAC=1;MLEAF=0.500;MQ=17.93;MQ0=9;MQRankSum=2.006;QD=1.52;ReadPosRankSum=-1.227;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,37:176:99:298,0,607 chrI 1255 . T C 751.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.544;DP=173;Dels=0.00;FS=10.116;HaplotypeScore=27.7940;MLEAC=1;MLEAF=0.500;MQ=27.83;MQ0=9;MQRankSum=0.747;QD=4.34;ReadPosRankSum=3.221;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,68:173:99:781,0,965 chrI 1260 . T G 879.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.930;DP=158;Dels=0.00;FS=20.904;HaplotypeScore=16.5623;MLEAC=1;MLEAF=0.500;MQ=29.82;MQ0=8;MQRankSum=-1.296;QD=5.56;ReadPosRankSum=1.586;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:84,71:158:99:909,0,921 chrI 1263 . C T 2370 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=31.35;MQ0=8;QD=16.46;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,136:144:99:2403,273,0 chrI 1279 . C T 932.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.618;DP=145;Dels=0.00;FS=36.735;HaplotypeScore=6.7262;MLEAC=1;MLEAF=0.500;MQ=32.86;MQ0=2;MQRankSum=-3.258;QD=6.43;ReadPosRankSum=0.168;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,80:145:99:962,0,979 chrI 1303 . G T 853.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.313;DP=148;Dels=0.00;FS=7.827;HaplotypeScore=83.6727;MLEAC=1;MLEAF=0.500;MQ=33.74;MQ0=1;MQRankSum=4.641;QD=5.76;ReadPosRankSum=0.774;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:87,61:148:99:883,0,1088 chrI 1309 . C T 832.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;DP=151;Dels=0.00;FS=7.575;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=33.51;MQ0=1;MQRankSum=-5.171;QD=5.51;ReadPosRankSum=-0.076;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,87:151:99:862,0,897 chrI 1312 . A G 1028.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;DP=152;Dels=0.00;FS=7.360;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=33.48;MQ0=1;MQRankSum=-3.775;QD=6.76;ReadPosRankSum=0.472;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,86:152:99:1058,0,898 chrI 1320 . G C 846.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;DP=135;Dels=0.00;FS=6.809;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=33.87;MQ0=0;MQRankSum=-3.899;QD=6.27;ReadPosRankSum=1.732;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,72:135:99:876,0,751 chrI 1321 . C A 927.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.941;DP=133;Dels=0.00;FS=7.101;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=33.82;MQ0=0;MQRankSum=-3.009;QD=6.97;ReadPosRankSum=1.071;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,74:133:99:957,0,719 chrI 1334 . C A,T 1526.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=1,1;MLEAF=0.500,0.500;MQ=31.70;MQ0=0;QD=14.40;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/2:0,58,48:106:99:1586,772,667,814,0,715 chrI 1335 . T A 659.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.170;DP=106;Dels=0.00;FS=6.932;HaplotypeScore=6.4801;MLEAC=1;MLEAF=0.500;MQ=31.70;MQ0=0;MQRankSum=-2.815;QD=6.22;ReadPosRankSum=1.647;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,58:106:99:689,0,661 chrI 1337 . G A 692.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.430;DP=103;Dels=0.00;FS=7.248;HaplotypeScore=8.1009;MLEAC=1;MLEAF=0.500;MQ=31.78;MQ0=0;MQRankSum=-0.868;QD=6.72;ReadPosRankSum=0.861;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,58:103:99:722,0,563 chrI 1345 . A C 412.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.324;DP=100;Dels=0.00;FS=10.184;HaplotypeScore=4.1575;MLEAC=1;MLEAF=0.500;MQ=28.81;MQ0=1;MQRankSum=2.629;QD=4.12;ReadPosRankSum=3.459;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:69,31:100:99:442,0,615 chrI 1346 . C A 419.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.305;DP=96;Dels=0.00;FS=9.731;HaplotypeScore=2.5367;MLEAC=1;MLEAF=0.500;MQ=28.80;MQ0=1;MQRankSum=2.984;QD=4.36;ReadPosRankSum=3.088;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:64,31:96:99:449,0,524 chrI 1370 . A T 249.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.833;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.7719;MLEAC=1;MLEAF=0.500;MQ=26.86;MQ0=1;MQRankSum=-0.532;QD=3.51;ReadPosRankSum=0.071;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,39:71:99:279,0,358 chrI 1379 . T C 316.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.299;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.9832;MLEAC=2;MLEAF=1.00;MQ=23.37;MQ0=0;MQRankSum=-0.783;QD=6.45;ReadPosRankSum=0.632;SB=-4.134e+00 GT:AD:DP:GQ:PL 1/1:2,47:49:1:345,1,0 chrI 1382 . G A 364 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.10;MQ0=0;QD=7.74;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:48:397,48,0 chrI 1397 . A G 113.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=22.3302;MLEAC=1;MLEAF=0.500;MQ=19.59;MQ0=4;MQRankSum=-3.240;QD=2.69;ReadPosRankSum=2.703;SB=-1.338e-02 GT:AD:DP:GQ:PL 0/1:8,34:42:25:143,0,25 chrI 1406 . G A 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.310;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=10.9335;MLEAC=1;MLEAF=0.500;MQ=18.08;MQ0=5;MQRankSum=0.989;QD=0.67;ReadPosRankSum=-1.256;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,5:39:56:56,0,101 chrI 1483 . C A 63.51 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=191.7549;MLEAC=2;MLEAF=1.00;MQ=26.74;MQ0=3;QD=1.06;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,11:59:12:96,12,0 chrI 1505 . T G 62.51 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=56.9704;MLEAC=2;MLEAF=1.00;MQ=27.66;MQ0=0;QD=0.95;SB=-4.652e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:12:95,12,0 chrI 1506 . T G 59.51 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=57.8143;MLEAC=2;MLEAF=1.00;MQ=27.66;MQ0=0;QD=0.90;SB=-4.352e+01 GT:AD:DP:GQ:PL 1/1:0,65:66:12:92,12,0 chrI 1509 . G A 14.28 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.274;DP=69;Dels=0.00;FS=41.172;HaplotypeScore=60.7743;MLEAC=1;MLEAF=0.500;MQ=27.72;MQ0=0;MQRankSum=0.398;QD=0.21;ReadPosRankSum=2.812;SB=-3.124e+00 GT:AD:DP:GQ:PL 0/1:4,65:69:13:44,0,13 chrI 1518 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;QD=0.28;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,63:63:6:49,6,0 chrI 1536 . C T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;QD=0.38;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,58:58:6:53,6,0 chrI 1540 . T G 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=0;QD=0.32;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,55:55:6:49,6,0 chrI 1545 . T G 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=0.31;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,51:51:6:47,6,0 chrI 1547 . G A 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=0.31;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,51:51:6:47,6,0 chrI 1551 . T C 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.45;MQ0=0;QD=0.50;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,46:46:6:54,6,0 chrI 1556 . T C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.49;MQ0=0;QD=0.50;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,40:40:6:51,6,0 chrI 1560 . C T 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.45;MQ0=0;QD=0.51;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,39:39:6:51,6,0 chrI 1565 . A T 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.85;MQ0=0;QD=0.65;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,32:32:6:52,6,0 chrI 1568 . G A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=0;QD=0.58;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,31:31:6:49,6,0 chrI 1583 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=18;Dels=0.00;FS=12.553;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=0;MQRankSum=1.156;QD=1.21;ReadPosRankSum=0.193;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,17:18:6:53,6,0 chrI 1658 . C T 303.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.026;DP=54;Dels=0.00;FS=47.973;HaplotypeScore=4.1126;MLEAC=1;MLEAF=0.500;MQ=21.29;MQ0=13;MQRankSum=0.100;QD=5.61;ReadPosRankSum=-1.619;SB=-3.038e+00 GT:AD:DP:GQ:PL 0/1:24,30:54:20:333,0,20 chrI 1677 . C T 1345.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.787;DP=127;Dels=0.00;FS=105.310;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=28.35;MQ0=13;MQRankSum=-1.588;QD=10.59;ReadPosRankSum=-1.054;SB=-3.460e+02 GT:AD:DP:GQ:PL 0/1:41,86:127:99:1375,0,187 chrI 1706 . T A 2993.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;DP=244;Dels=0.00;FS=117.459;HaplotypeScore=16.7905;MLEAC=1;MLEAF=0.500;MQ=32.70;MQ0=11;MQRankSum=-2.443;QD=12.27;ReadPosRankSum=1.621;SB=-1.582e+03 GT:AD:DP:GQ:PL 0/1:73,170:244:99:3023,0,627 chrI 1741 . T C 799.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.940;DP=405;Dels=0.00;FS=88.424;HaplotypeScore=26.2393;MLEAC=1;MLEAF=0.500;MQ=29.55;MQ0=62;MQRankSum=2.435;QD=1.97;ReadPosRankSum=-0.448;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:324,81:405:99:829,0,4670 chrI 1770 . T G 4930.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.281;DP=424;Dels=0.00;FS=0.000;HaplotypeScore=17.3402;MLEAC=2;MLEAF=1.00;MQ=25.13;MQ0=151;MQRankSum=1.314;QD=11.63;ReadPosRankSum=5.310;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:10,412:424:99:4930,596,0 chrI 1782 . C T 3718.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=8.189;DP=381;Dels=0.00;FS=4.380;HaplotypeScore=12.2380;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=151;MQRankSum=5.490;QD=9.76;ReadPosRankSum=-0.769;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:57,324:381:99:3718,204,0 chrI 1797 . G A 108.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.107;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=43.3132;MLEAC=1;MLEAF=0.500;MQ=18.99;MQ0=154;MQRankSum=-0.226;QD=0.33;ReadPosRankSum=-0.161;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:279,50:329:99:138,0,1955 chrI 1802 . T C 1791.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.347;DP=320;Dels=0.00;FS=9.138;HaplotypeScore=36.8107;MLEAC=1;MLEAF=0.500;MQ=18.09;MQ0=158;MQRankSum=3.535;QD=5.60;ReadPosRankSum=-5.005;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:62,257:320:45:1821,0,45 chrI 1918 . A G 3179 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=385;Dels=0.00;FS=0.000;HaplotypeScore=6.6917;MLEAC=2;MLEAF=1.00;MQ=19.63;MQ0=175;MQRankSum=1.715;QD=8.26;ReadPosRankSum=1.715;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:1,380:385:99:3212,392,0 chrI 1963 . G A 496.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.238;DP=667;Dels=0.00;FS=18.017;HaplotypeScore=22.3391;MLEAC=1;MLEAF=0.500;MQ=18.03;MQ0=307;MQRankSum=-0.300;QD=0.74;ReadPosRankSum=0.491;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:497,169:667:99:526,0,2634 chrI 1976 . T C 327.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.687;DP=633;Dels=0.00;FS=7.197;HaplotypeScore=81.7351;MLEAC=1;MLEAF=0.500;MQ=17.50;MQ0=292;MQRankSum=0.982;QD=0.52;ReadPosRankSum=0.472;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:514,118:633:99:357,0,2631 chrI 1978 . G A 1789.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.931;DP=629;Dels=0.00;FS=257.607;HaplotypeScore=149.9925;MLEAC=1;MLEAF=0.500;MQ=17.48;MQ0=290;MQRankSum=4.694;QD=2.84;ReadPosRankSum=0.236;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:376,250:629:99:1819,0,1056 chrI 2017 . G A 141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.301;DP=354;Dels=0.00;FS=21.337;HaplotypeScore=71.7213;MLEAC=1;MLEAF=0.500;MQ=15.56;MQ0=181;MQRankSum=-2.222;QD=0.40;ReadPosRankSum=0.771;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:214,140:354:99:171,0,755 chrI 2029 . T C 692 filter AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=18.16;MQ0=60;QD=4.64;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,145:149:87:725,87,0 chrI 2068 . C A 148.06 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.41;MQ0=36;QD=2.03;SB=-1.001e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:21:181,21,0 chrI 2113 . A G 684 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.717;DP=238;Dels=0.00;FS=73.085;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=13.77;MQ0=155;MQRankSum=5.372;QD=2.87;ReadPosRankSum=-0.218;SB=-6.701e+01 GT:AD:DP:GQ:PL 1/1:141,97:238:58:717,58,0 chrI 2146 . G A 700.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.912;DP=351;Dels=0.00;FS=92.090;HaplotypeScore=6.4833;MLEAC=1;MLEAF=0.500;MQ=15.03;MQ0=209;MQRankSum=-3.207;QD=1.99;ReadPosRankSum=-2.895;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:107,243:351:99:730,0,590 chrI 2186 . G A 876.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.554;DP=464;Dels=0.00;FS=48.468;HaplotypeScore=22.2639;MLEAC=1;MLEAF=0.500;MQ=19.18;MQ0=156;MQRankSum=-0.985;QD=1.89;ReadPosRankSum=8.995;SB=-3.270e+02 GT:AD:DP:GQ:PL 0/1:285,165:464:99:906,0,1808 chrI 2207 . A G 493.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.792;DP=471;Dels=0.00;FS=150.690;HaplotypeScore=134.4340;MLEAC=1;MLEAF=0.500;MQ=23.27;MQ0=102;MQRankSum=7.195;QD=1.05;ReadPosRankSum=-2.519;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:359,111:471:99:523,0,3218 chrI 2211 . G T 140.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.041;DP=471;Dels=0.00;FS=61.053;HaplotypeScore=232.7234;MLEAC=1;MLEAF=0.500;MQ=24.05;MQ0=88;MQRankSum=-3.754;QD=0.30;ReadPosRankSum=0.088;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:377,87:471:99:170,0,3407 chrI 2214 . A G 107.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.225;DP=457;Dels=0.00;FS=58.671;HaplotypeScore=232.5209;MLEAC=1;MLEAF=0.500;MQ=24.58;MQ0=71;MQRankSum=-4.045;QD=0.23;ReadPosRankSum=0.548;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:368,88:457:99:137,0,3663 chrI 2216 . G A 500.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.420;DP=453;Dels=0.00;FS=113.402;HaplotypeScore=229.8250;MLEAC=1;MLEAF=0.500;MQ=25.07;MQ0=65;MQRankSum=6.045;QD=1.10;ReadPosRankSum=0.132;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:341,110:453:99:530,0,2978 chrI 2219 . A G 1963.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.659;DP=448;Dels=0.00;FS=57.969;HaplotypeScore=347.7841;MLEAC=1;MLEAF=0.500;MQ=25.63;MQ0=59;MQRankSum=3.439;QD=4.38;ReadPosRankSum=4.449;SB=-5.320e+02 GT:AD:DP:GQ:PL 0/1:113,228:448:99:1993,0,708 chrI 2220 . G T 499.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.696;DP=446;Dels=0.00;FS=106.096;HaplotypeScore=383.1900;MLEAC=1;MLEAF=0.500;MQ=25.93;MQ0=57;MQRankSum=4.348;QD=1.12;ReadPosRankSum=0.813;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:329,107:446:99:529,0,2985 chrI 2223 . T A 457.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.788;DP=454;Dels=0.00;FS=102.381;HaplotypeScore=410.3052;MLEAC=1;MLEAF=0.500;MQ=26.15;MQ0=52;MQRankSum=6.293;QD=1.01;ReadPosRankSum=-0.454;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:325,129:454:99:487,0,3172 chrI 2228 . A G 170.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.306;DP=455;Dels=0.01;FS=26.384;HaplotypeScore=357.9246;MLEAC=1;MLEAF=0.500;MQ=26.97;MQ0=40;MQRankSum=-5.066;QD=0.37;ReadPosRankSum=-5.823;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:378,72:450:99:200,0,3283 chrI 2229 . C A 170.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;DP=455;Dels=0.00;FS=31.740;HaplotypeScore=354.4018;MLEAC=1;MLEAF=0.500;MQ=27.08;MQ0=38;MQRankSum=-5.187;QD=0.37;ReadPosRankSum=-6.547;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:374,75:455:99:200,0,3182 chrI 2230 . A T 149.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.870;DP=446;Dels=0.00;FS=10.638;HaplotypeScore=276.5160;MLEAC=1;MLEAF=0.500;MQ=27.09;MQ0=37;MQRankSum=-7.144;QD=0.33;ReadPosRankSum=-3.875;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:389,57:446:99:179,0,3394 chrI 2237 . C T 394.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.858;DP=409;Dels=0.00;FS=68.885;HaplotypeScore=135.7689;MLEAC=1;MLEAF=0.500;MQ=27.43;MQ0=32;MQRankSum=3.812;QD=0.96;ReadPosRankSum=3.143;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:294,114:409:99:424,0,2854 chrI 2238 . A T 353.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.830;DP=408;Dels=0.00;FS=68.821;HaplotypeScore=144.4516;MLEAC=1;MLEAF=0.500;MQ=27.50;MQ0=31;MQRankSum=5.719;QD=0.87;ReadPosRankSum=3.168;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:295,113:408:99:383,0,3217 chrI 2242 . G A 376.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.309;DP=400;Dels=0.00;FS=68.998;HaplotypeScore=26.3847;MLEAC=1;MLEAF=0.500;MQ=27.84;MQ0=26;MQRankSum=5.609;QD=0.94;ReadPosRankSum=2.848;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:285,114:400:99:406,0,3029 chrI 2253 . A G 65.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.297;DP=416;Dels=0.00;FS=34.954;HaplotypeScore=391.3241;MLEAC=1;MLEAF=0.500;MQ=30.00;MQ0=7;MQRankSum=-2.332;QD=0.16;ReadPosRankSum=1.618;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:328,86:416:95:95,0,3201 chrI 2256 . C T 94.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.163;DP=410;Dels=0.00;FS=35.217;HaplotypeScore=386.6379;MLEAC=1;MLEAF=0.500;MQ=30.31;MQ0=3;MQRankSum=-0.150;QD=0.23;ReadPosRankSum=1.088;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:323,85:410:99:124,0,3284 chrI 2273 . A G 331.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.169;DP=390;Dels=0.00;FS=106.106;HaplotypeScore=13.6056;MLEAC=1;MLEAF=0.500;MQ=31.67;MQ0=1;MQRankSum=-1.896;QD=0.85;ReadPosRankSum=-6.902;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:196,191:390:99:361,0,3326 chrI 2287 . T C 2628.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;DP=295;Dels=0.00;FS=16.065;HaplotypeScore=167.0335;MLEAC=1;MLEAF=0.500;MQ=32.92;MQ0=0;MQRankSum=1.814;QD=8.91;ReadPosRankSum=-1.911;SB=-8.190e+02 GT:AD:DP:GQ:PL 0/1:39,254:295:99:2658,0,178 chrI 2296 . T A 1019.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.037;DP=296;Dels=0.00;FS=2.497;HaplotypeScore=115.2299;MLEAC=1;MLEAF=0.500;MQ=33.35;MQ0=0;MQRankSum=-0.923;QD=3.44;ReadPosRankSum=4.193;SB=-1.320e+02 GT:AD:DP:GQ:PL 0/1:219,77:296:99:1049,0,2265 chrI 2323 . C T 337.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.574;DP=197;Dels=0.00;FS=11.392;HaplotypeScore=27.9608;MLEAC=1;MLEAF=0.500;MQ=34.05;MQ0=0;MQRankSum=-5.407;QD=1.71;ReadPosRankSum=-4.893;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:153,43:197:99:367,0,2627 chrI 2331 . A C,G 3230.05 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.387;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=32.7171;MLEAC=1,1;MLEAF=0.500,0.500;MQ=31.93;MQ0=3;MQRankSum=-0.736;QD=13.57;ReadPosRankSum=1.269;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/2:2,112,124:238:99:3291,2271,2127,1020,0,715 chrI 2340 . T C 3605.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=50.9859;MLEAC=2;MLEAF=1.00;MQ=31.24;MQ0=9;MQRankSum=0.601;QD=14.31;ReadPosRankSum=2.389;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:2,250:252:99:3605,443,0 chrI 2358 . C G 166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;DP=301;Dels=0.00;FS=11.913;HaplotypeScore=114.9347;MLEAC=1;MLEAF=0.500;MQ=28.48;MQ0=17;MQRankSum=-6.210;QD=0.55;ReadPosRankSum=1.878;SB=-2.440e+02 GT:AD:DP:GQ:PL 0/1:180,121:301:99:196,0,2158 chrI 2371 . T A 889.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.488;DP=336;Dels=0.00;FS=20.993;HaplotypeScore=97.1996;MLEAC=1;MLEAF=0.500;MQ=25.99;MQ0=20;MQRankSum=-8.593;QD=2.65;ReadPosRankSum=1.166;SB=-1.305e+03 GT:AD:DP:GQ:PL 0/1:94,241:336:99:919,0,1204 chrI 2383 . C G 808.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;DP=393;Dels=0.00;FS=2.205;HaplotypeScore=123.9409;MLEAC=1;MLEAF=0.500;MQ=25.70;MQ0=22;MQRankSum=-0.055;QD=2.06;ReadPosRankSum=-1.769;SB=-8.250e+02 GT:AD:DP:GQ:PL 0/1:135,143:393:99:838,0,1076 chrI 2384 . T C 1386.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.338;DP=400;Dels=0.00;FS=40.875;HaplotypeScore=123.1522;MLEAC=1;MLEAF=0.500;MQ=25.51;MQ0=23;MQRankSum=-2.881;QD=3.47;ReadPosRankSum=-0.689;SB=-1.451e+03 GT:AD:DP:GQ:PL 0/1:139,260:399:99:1416,0,1012 chrI 2406 . A C 831.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.837;DP=528;Dels=0.00;FS=13.773;HaplotypeScore=30.8187;MLEAC=1;MLEAF=0.500;MQ=26.77;MQ0=27;MQRankSum=-8.206;QD=1.57;ReadPosRankSum=2.204;SB=-6.030e+02 GT:AD:DP:GQ:PL 0/1:301,223:528:99:861,0,3798 chrI 2447 . G A 721.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.695;DP=606;Dels=0.00;FS=0.748;HaplotypeScore=32.4185;MLEAC=1;MLEAF=0.500;MQ=32.47;MQ0=14;MQRankSum=-7.216;QD=1.19;ReadPosRankSum=-3.017;SB=-1.120e+02 GT:AD:DP:GQ:PL 0/1:437,168:606:99:751,0,6647 chrI 2450 . T C 785.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;DP=620;Dels=0.00;FS=2.135;HaplotypeScore=35.0634;MLEAC=1;MLEAF=0.500;MQ=32.77;MQ0=14;MQRankSum=-6.282;QD=1.27;ReadPosRankSum=-0.952;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:465,152:620:99:815,0,6680 chrI 2485 . A T 569.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.402;DP=523;Dels=0.00;FS=81.230;HaplotypeScore=125.8463;MLEAC=1;MLEAF=0.500;MQ=35.15;MQ0=7;MQRankSum=-1.063;QD=1.09;ReadPosRankSum=3.283;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:433,89:523:99:599,0,6485 chrI 2512 . A G 5376.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.135;DP=374;Dels=0.00;FS=12.470;HaplotypeScore=39.2462;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=6;MQRankSum=0.187;QD=14.37;ReadPosRankSum=3.603;SB=-3.382e+03 GT:AD:DP:GQ:PL 1/1:11,363:374:99:5376,647,0 chrI 2524 . T C 3834.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DP=320;Dels=0.00;FS=1.264;HaplotypeScore=13.2128;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=8;MQRankSum=1.736;QD=11.98;ReadPosRankSum=2.253;SB=-3.375e+03 GT:AD:DP:GQ:PL 1/1:9,309:320:99:3834,411,0 chrI 2533 . G T 3015.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;DP=312;Dels=0.00;FS=88.749;HaplotypeScore=48.5862;MLEAC=1;MLEAF=0.500;MQ=31.57;MQ0=7;MQRankSum=3.584;QD=9.66;ReadPosRankSum=4.595;SB=-2.786e+03 GT:AD:DP:GQ:PL 0/1:41,271:312:99:3045,0,114 chrI 2535 . C A 3771.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.690;DP=318;Dels=0.00;FS=18.081;HaplotypeScore=78.7516;MLEAC=2;MLEAF=1.00;MQ=32.10;MQ0=7;MQRankSum=0.112;QD=11.86;ReadPosRankSum=5.018;SB=-3.355e+03 GT:AD:DP:GQ:PL 1/1:14,298:318:99:3771,286,0 chrI 2536 . A G 3646.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.043;DP=321;Dels=0.00;FS=18.309;HaplotypeScore=81.1176;MLEAC=2;MLEAF=1.00;MQ=32.49;MQ0=7;MQRankSum=1.467;QD=11.36;ReadPosRankSum=4.866;SB=-3.227e+03 GT:AD:DP:GQ:PL 1/1:14,303:321:99:3646,275,0 chrI 2589 . C G 5177.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.757;DP=425;Dels=0.00;FS=69.508;HaplotypeScore=14.5971;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=8;MQRankSum=1.899;QD=12.18;ReadPosRankSum=-0.370;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:25,397:425:99:5177,274,0 chrI 2643 . G A 6341.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=380;Dels=0.00;FS=3.143;HaplotypeScore=34.6507;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=11;MQRankSum=-0.792;QD=16.69;ReadPosRankSum=-0.887;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:1,378:380:99:6341,735,0 chrI 2789 . A G 6108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.432;DP=316;Dels=0.00;FS=37.982;HaplotypeScore=16.8037;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=5.276;QD=19.33;ReadPosRankSum=3.330;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:20,295:316:99:6108,535,0 chrI 2825 . G C 5694.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=19.9953;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=20.12;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,277:283:99:5694,698,0 chrI 2891 . G T 6571.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=3.7396;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=20.41;SB=-3.340e+03 GT:AD:DP:GQ:PL 1/1:0,322:322:99:6571,759,0 chrI 2914 . G A 6303.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=13.6518;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=19.76;SB=-3.078e+03 GT:AD:DP:GQ:PL 1/1:0,316:319:99:6303,735,0 chrI 2970 . T C 4754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=233;Dels=0.00;FS=9.849;HaplotypeScore=17.4782;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.509;QD=20.40;ReadPosRankSum=2.926;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:3,228:233:99:4754,566,0 chrI 3053 . T G 4368.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=16.0637;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.85;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:4368,524,0 chrI 3328 . T C 4361.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.4752;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.14;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4361,518,0 chrI 3462 . A C 6126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=288;Dels=0.00;FS=2.957;HaplotypeScore=17.6571;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.245;QD=21.27;ReadPosRankSum=2.398;SB=-3.034e+03 GT:AD:DP:GQ:PL 1/1:2,284:288:99:6126,731,0 chrI 3816 . A G 4600.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=2.7453;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=20.63;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4600,566,0 chrI 3859 . G C 3369.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=8.5968;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;QD=14.34;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:3369,413,0 chrI 3864 . A G 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=7.5117;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;MQRankSum=-0.547;QD=13.71;ReadPosRankSum=1.686;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:3118,377,0 chrI 3942 . G A 5837.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=17.96;SB=-3.229e+03 GT:AD:DP:GQ:PL 1/1:0,324:325:99:5837,684,0 chrI 3990 . G A 6717.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=6.9231;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=21.26;SB=-3.178e+03 GT:AD:DP:GQ:PL 1/1:0,315:316:99:6717,765,0 chrI 4022 . G A 4970.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=1.8533;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=18.48;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:0,265:269:99:4970,573,0 chrI 4034 . A T 4295.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=2.7669;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=17.32;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:4295,503,0 chrI 4067 . A G 4040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=238;Dels=0.00;FS=3.217;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;MQRankSum=-1.542;QD=16.97;ReadPosRankSum=1.688;SB=-2.746e+03 GT:AD:DP:GQ:PL 1/1:1,236:238:99:4040,491,0 chrI 4107 . A G 6158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=306;Dels=0.00;FS=5.910;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=-1.023;QD=20.12;ReadPosRankSum=2.964;SB=-3.390e+03 GT:AD:DP:GQ:PL 1/1:3,300:306:99:6158,725,0 chrI 4119 . G A 6812.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.35;SB=-3.321e+03 GT:AD:DP:GQ:PL 1/1:0,317:319:99:6812,797,0 chrI 4187 . A G 7475.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.760;DP=363;Dels=0.00;FS=11.802;HaplotypeScore=22.4589;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=1.430;QD=20.59;ReadPosRankSum=3.825;SB=-3.985e+03 GT:AD:DP:GQ:PL 1/1:5,354:363:99:7475,893,0 chrI 4324 . G A 5986.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=22.42;SB=-3.062e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:5986,684,0 chrI 4456 . T C 5653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=278;Dels=0.00;FS=4.172;HaplotypeScore=17.3944;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.632;QD=20.33;ReadPosRankSum=1.695;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:1,276:278:99:5653,674,0 chrI 4508 . T C 5221.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.05;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5221,612,0 chrI 4597 . G C 4122.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=19.72;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4122,486,0 chrI 4801 . T C 3115 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.9999;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;QD=18.77;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3148,377,0 chrI 4818 . C T 2634 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=19.51;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2667,309,0 chrI 4819 . C T 2539 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=18.81;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2572,303,0 chrI 4831 . A T 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=39.46;MQ0=0;MQRankSum=-0.754;QD=19.32;ReadPosRankSum=1.679;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2564,300,0 chrI 4836 . A G 2448 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;QD=18.69;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2481,300,0 chrI 4859 . T C 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=6.259;HaplotypeScore=9.2973;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;MQRankSum=0.013;QD=18.73;ReadPosRankSum=1.706;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2486,300,0 chrI 4949 . C G 3839.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.31;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3839,458,0 chrI 4993 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;QD=14.67;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:2689,315,0 chrI 5030 . A G 193 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=101;Dels=0.00;FS=24.473;HaplotypeScore=3.9549;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=0;MQRankSum=-2.950;QD=1.91;ReadPosRankSum=2.929;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:3,96:101:30:226,30,0 chrI 5031 . C A 215.33 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.768;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;MQRankSum=0.804;QD=2.22;ReadPosRankSum=1.661;SB=-3.433e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:14:248,14,0 chrI 5035 . C G 914 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=0;QD=7.25;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:947,114,0 chrI 5047 . G T 1271 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.1426;MLEAC=2;MLEAF=1.00;MQ=37.18;MQ0=0;QD=8.25;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:1304,156,0 chrI 5218 . C T 5666.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=11.3176;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=21.38;SB=-2.930e+03 GT:AD:DP:GQ:PL 1/1:0,260:265:99:5666,645,0 chrI 5237 . C A 5569.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=9.0513;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;QD=22.28;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5569,639,0 chrI 5451 . C T 4998.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=7.1258;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.83;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:0,249:252:99:4998,585,0 chrI 5463 . A G 4745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=253;Dels=0.00;FS=5.602;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.226;QD=18.75;ReadPosRankSum=2.901;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:3,250:253:99:4745,584,0 chrI 5466 . A G 4901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=1.526;QD=19.45;ReadPosRankSum=1.691;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:1,251:252:99:4901,590,0 chrI 5487 . A T 4765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=260;Dels=0.00;FS=2.573;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.807;QD=18.33;ReadPosRankSum=2.421;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:2,258:260:99:4765,566,0 chrI 5569 . G A 5388.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=18.39;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:0,292:293:99:5388,635,0 chrI 5576 . G C 5500.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=11.6699;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=18.90;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:0,286:291:99:5500,671,0 chrI 5627 . A G 5587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.687;DP=298;Dels=0.00;FS=18.878;HaplotypeScore=12.5300;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-2.196;QD=18.75;ReadPosRankSum=3.804;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:5,288:298:99:5587,656,0 chrI 5646 . C T 5902.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=11.2499;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.74;SB=-2.870e+03 GT:AD:DP:GQ:PL 1/1:0,294:299:99:5902,675,0 chrI 5718 . T G 5945.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=8.7254;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.08;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,276:282:99:5945,713,0 chrI 5741 . T C 4759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=260;Dels=0.00;FS=5.527;HaplotypeScore=4.1703;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;MQRankSum=-0.366;QD=18.30;ReadPosRankSum=2.942;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:3,255:260:99:4759,569,0 chrI 5756 . G T 4862.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=18.92;SB=-3.107e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:4862,558,0 chrI 5763 . T C 4564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=257;Dels=0.00;FS=6.175;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=-0.973;QD=17.76;ReadPosRankSum=2.382;SB=-3.016e+03 GT:AD:DP:GQ:PL 1/1:2,255:257:99:4564,551,0 chrI 5814 . C T 6276.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=10.5254;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.31;SB=-3.222e+03 GT:AD:DP:GQ:PL 1/1:0,308:309:99:6276,717,0 chrI 6001 . A G 5432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=251;Dels=0.00;FS=6.215;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=0.380;QD=21.64;ReadPosRankSum=2.420;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:2,247:251:99:5432,665,0 chrI 6031 . A G 4982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=8.0517;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.258;QD=21.11;ReadPosRankSum=1.703;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:1,234:236:99:4982,599,0 chrI 6091 . C T 3775.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.8603;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.33;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:3775,429,0 chrI 6153 . G C 5255.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.10;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:0,246:249:99:5255,632,0 chrI 6201 . G A 4908.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=21.0355;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.97;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4908,564,0 chrI 6356 . A C 5611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=289;Dels=0.00;FS=6.097;HaplotypeScore=8.2258;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=1.035;QD=19.42;ReadPosRankSum=2.424;SB=-3.433e+03 GT:AD:DP:GQ:PL 1/1:2,287:289:99:5611,659,0 chrI 6365 . G A 5441.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=20.15;SB=-3.302e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:5441,621,0 chrI 6392 . A T 4309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=233;Dels=0.00;FS=6.383;HaplotypeScore=8.0702;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=0.090;QD=18.49;ReadPosRankSum=2.355;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:4309,489,0 chrI 6556 . A G 4887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=1.116;QD=21.72;ReadPosRankSum=1.717;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:4887,581,0 chrI 6962 . T C 3843.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=20.55;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3843,458,0 chrI 7076 . A T 4103.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.01;FS=0.000;HaplotypeScore=13.1539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4103,477,0 chrI 7268 . G T 5299.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5299,612,0 chrI 7403 . A G 6965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=314;Dels=0.00;FS=2.989;HaplotypeScore=23.0859;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.429;QD=22.18;ReadPosRankSum=2.418;SB=-3.389e+03 GT:AD:DP:GQ:PL 1/1:2,310:314:99:6965,833,0 chrI 9053 . T A 87.26 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.01;FS=0.000;HaplotypeScore=236.8123;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=0.35;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:15:120,15,0 chrI 9090 . T A 4543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=216;Dels=0.00;FS=3.477;HaplotypeScore=13.7129;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.882;QD=21.03;ReadPosRankSum=1.668;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4543,525,0 chrI 9376 . T G 7256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=15.3507;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.086;QD=21.34;ReadPosRankSum=2.392;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:2,338:340:99:7256,883,0 chrI 9473 . A G 5528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=266;Dels=0.00;FS=2.991;HaplotypeScore=13.9824;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.453;QD=20.78;ReadPosRankSum=2.431;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:2,264:266:99:5528,671,0 chrI 9538 . T C 8018.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=398;Dels=0.00;FS=13.580;HaplotypeScore=26.1365;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.227;QD=20.15;ReadPosRankSum=2.927;SB=-3.197e+03 GT:AD:DP:GQ:PL 1/1:3,395:398:99:8018,956,0 chrI 9753 . T C 2198.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.085;DP=246;Dels=0.00;FS=5.134;HaplotypeScore=17.3944;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=-0.249;QD=8.93;ReadPosRankSum=1.564;SB=-1.099e+03 GT:AD:DP:GQ:PL 0/1:114,132:246:99:2228,0,1768 chrI 9910 . G A 5741.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.91;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:5741,674,0 chrI 9958 . T G 7110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=13.5053;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.700;QD=22.08;ReadPosRankSum=1.721;SB=-3.319e+03 GT:AD:DP:GQ:PL 1/1:1,321:322:99:7110,848,0 chrI 10664 . T C 4994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=234;Dels=0.00;FS=6.268;HaplotypeScore=13.9912;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.005;QD=21.34;ReadPosRankSum=2.428;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:2,230:234:99:4994,585,0 chrI 11045 . A C 4715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.7128;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.600;QD=22.35;ReadPosRankSum=1.716;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:4715,566,0 chrI 11107 . G A 5280.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=7.5609;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.26;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5280,600,0 chrI 11876 . T C 9734.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.978;DP=596;Dels=0.00;FS=18.959;HaplotypeScore=43.5424;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=85;MQRankSum=-3.328;QD=16.33;ReadPosRankSum=5.072;SB=-4.983e+03 GT:AD:DP:GQ:PL 1/1:9,583:596:99:9734,1174,0 chrI 11997 . T A 6202.01 filter AC=2;AF=1.00;AN=2;DP=547;Dels=0.00;FS=0.000;HaplotypeScore=8.0575;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=147;QD=11.34;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,547:547:99:6202,758,0 chrI 12051 . A G 3378.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=434;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=16.88;MQ0=162;MQRankSum=-2.197;QD=7.78;ReadPosRankSum=2.359;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:7,427:434:99:3378,416,0 chrI 12141 . A G 9643.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.725;DP=555;Dels=0.00;FS=2.290;HaplotypeScore=37.4654;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=17;MQRankSum=1.530;QD=17.37;ReadPosRankSum=3.795;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:5,545:555:99:9643,1162,0 chrI 12190 . A G 6007.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.569;DP=445;Dels=0.00;FS=4.328;HaplotypeScore=15.9716;MLEAC=2;MLEAF=1.00;MQ=30.79;MQ0=65;MQRankSum=-3.779;QD=13.50;ReadPosRankSum=4.839;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:8,437:445:99:6007,737,0 chrI 12256 . A T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.422;DP=26;Dels=0.00;FS=3.010;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.28;MQ0=17;MQRankSum=1.422;QD=0.80;ReadPosRankSum=-2.054;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:20,6:26:6:52,6,0 chrI 12308 . G A 419.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.661;DP=180;Dels=0.00;FS=39.496;HaplotypeScore=4.0303;MLEAC=1;MLEAF=0.500;MQ=22.00;MQ0=61;MQRankSum=0.855;QD=2.33;ReadPosRankSum=0.034;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,88:180:99:449,0,823 chrI 12361 . G A 1621 filter AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.78;MQ0=45;QD=10.32;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,157:157:99:1654,189,0 chrI 12363 . A G 1516 filter AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.61;MQ0=43;QD=10.04;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:1549,189,0 chrI 12381 . G A 63.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;DP=103;Dels=0.00;FS=17.939;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.50;MQ0=26;MQRankSum=0.401;QD=0.61;ReadPosRankSum=-2.341;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,26:103:93:93,0,592 chrI 12384 . C G,T 643.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=20.59;MQ0=26;QD=7.31;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/2:0,67,21:88:57:703,135,57,568,0,550 chrI 12396 . T C 451 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.76;MQ0=23;QD=7.05;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:60:484,60,0 chrI 12410 . A G 335 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.039;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=21.66;MQ0=18;MQRankSum=1.207;QD=6.70;ReadPosRankSum=2.297;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:6,44:50:45:368,45,0 chrI 12518 . T C 141.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.78;MQ0=10;QD=7.42;SB=-2.594e+01 GT:AD:DP:GQ:PL 1/1:8,11:19:21:174,21,0 chrI 12522 . T C 116.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.86;MQ0=9;QD=6.83;SB=-2.688e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:18:149,18,0 chrI 12524 . T C 94.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.86;MQ0=9;QD=5.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:15:127,15,0 chrI 12529 . A G 118.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.31;MQ0=8;QD=7.38;SB=-2.488e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:18:151,18,0 chrI 12546 . T A 148.06 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.62;MQ0=3;QD=11.39;SB=-7.681e+01 GT:AD:DP:GQ:PL 1/1:2,11:13:21:181,21,0 chrI 12551 . T C 264.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.704;DP=25;Dels=0.00;FS=28.802;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.52;MQ0=1;MQRankSum=2.113;QD=10.56;ReadPosRankSum=-2.358;SB=-2.989e+00 GT:AD:DP:GQ:PL 0/1:8,16:25:47:294,0,47 chrI 12553 . A G 407.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;DP=33;Dels=0.00;FS=35.558;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.16;MQ0=1;MQRankSum=3.286;QD=12.33;ReadPosRankSum=-0.718;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:9,24:33:77:437,0,77 chrI 12561 . A G 489 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.739;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.55;MQ0=0;MQRankSum=2.199;QD=18.11;ReadPosRankSum=2.739;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:3,24:27:63:522,63,0 chrI 12620 . T C 494 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.08;MQ0=0;QD=20.58;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:63:527,63,0 chrI 12647 . T C 62.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.663;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;MQRankSum=2.663;QD=2.50;ReadPosRankSum=2.663;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:3,18:25:12:95,12,0 chrI 12649 . A G 70.51 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=3.36;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:12:103,12,0 chrI 12657 . A G 89.26 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=0;QD=3.08;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,29:29:15:122,15,0 chrI 12662 . T C 90.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=25.47;MQ0=0;MQRankSum=1.366;QD=1.96;ReadPosRankSum=4.733;SB=2.77 GT:AD:DP:GQ:PL 1/1:13,33:46:15:123,15,0 chrI 12666 . T C 128.46 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.485;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=25.55;MQ0=0;MQRankSum=1.841;QD=2.57;ReadPosRankSum=5.002;SB=-1.459e+00 GT:AD:DP:GQ:PL 0/1:16,34:50:1:157,0,1 chrI 12668 . T C 119.98 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.588;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=25.62;MQ0=0;MQRankSum=1.688;QD=2.35;ReadPosRankSum=5.185;SB=-9.777e-01 GT:AD:DP:GQ:PL 0/1:17,34:51:3:149,0,3 chrI 12676 . A G 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.761;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.67;MQ0=0;MQRankSum=-0.593;QD=0.60;ReadPosRankSum=-5.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,19:55:63:63,0,178 chrI 12695 . T C 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.788;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=25.79;MQ0=0;MQRankSum=-0.863;QD=0.61;ReadPosRankSum=-2.742;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,21:57:65:65,0,150 chrI 12697 . A G 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=25.79;MQ0=0;MQRankSum=-0.769;QD=0.60;ReadPosRankSum=-1.348;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,21:57:64:64,0,171 chrI 12705 . A G 32.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.623;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=25.61;MQ0=0;MQRankSum=-0.537;QD=0.55;ReadPosRankSum=4.175;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,22:58:62:62,0,181 chrI 12710 . T C 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.033;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.61;MQ0=0;MQRankSum=-0.457;QD=0.59;ReadPosRankSum=5.376;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,22:58:64:64,0,185 chrI 12714 . T C 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.61;MQ0=0;MQRankSum=0.312;QD=0.62;ReadPosRankSum=5.921;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,22:58:66:66,0,165 chrI 12738 . T A 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=1;MLEAF=0.500;MQ=24.17;MQ0=0;MQRankSum=0.071;QD=1.31;ReadPosRankSum=5.282;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,22:39:79:81,0,79 chrI 12889 . A G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.17;MQ0=5;QD=2.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:9:6:50,6,0 chrI 12906 . A C 517 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=5;QD=12.61;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:66:550,66,0 chrI 13013 . G A 1249 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=104;Dels=0.00;FS=3.208;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=24.07;MQ0=14;MQRankSum=0.693;QD=12.01;ReadPosRankSum=1.193;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1282,150,0 chrI 13081 . A G 481 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.022;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=24.8643;MLEAC=2;MLEAF=1.00;MQ=22.11;MQ0=13;MQRankSum=-0.044;QD=9.25;ReadPosRankSum=0.933;SB=-6.843e-03 GT:AD:DP:GQ:PL 1/1:8,44:52:44:514,44,0 chrI 13122 . G A 668 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.65;MQ0=9;QD=10.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:84:701,84,0 chrI 13171 . T C 202 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.48;MQ0=8;QD=4.93;SB=-1.302e-02 GT:AD:DP:GQ:PL 1/1:0,41:41:30:235,30,0 chrI 13174 . T G 164.03 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.82;MQ0=8;QD=4.21;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,39:39:24:197,24,0 chrI 13194 . T G 119.13 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.32;MQ0=6;QD=4.77;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:18:152,18,0 chrI 13201 . T C 90.26 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.19;MQ0=6;QD=3.76;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:15:123,15,0 chrI 24431 . A G 164.03 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=13.17;MQ0=43;QD=2.25;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,68:73:24:197,24,0 chrI 24483 . A G 1470 filter AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=21.10;MQ0=37;QD=7.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:1503,189,0 chrI 24491 . T C 105.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.399;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=22.67;MQ0=1;MQRankSum=0.911;QD=1.67;ReadPosRankSum=3.532;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:5,54:63:18:138,18,0 chrI 24514 . C T 171.01 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.98;MQ0=7;QD=2.67;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,64:64:27:204,27,0 chrI 24550 . T C 171.01 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.96;MQ0=10;QD=2.14;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,80:80:27:204,27,0 chrI 24573 . A G 217 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.54;MQ0=13;QD=2.68;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,81:81:33:250,33,0 chrI 24582 . T C 107.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.82;MQ0=14;MQRankSum=-2.097;QD=1.70;ReadPosRankSum=2.350;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:2,61:63:18:140,18,0 chrI 24603 . A G 85.26 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.06;MQ0=24;QD=1.74;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,49:49:15:118,15,0 chrI 24761 . G A 1241.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.414;DP=367;Dels=0.00;FS=1.483;HaplotypeScore=32.6603;MLEAC=1;MLEAF=0.500;MQ=25.63;MQ0=53;MQRankSum=-0.012;QD=3.38;ReadPosRankSum=1.432;SB=-3.760e+02 GT:AD:DP:GQ:PL 0/1:200,162:367:99:1271,0,2339 chrI 24814 . G A 1679 filter AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.61;MQ0=34;QD=9.43;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,178:178:99:1712,198,0 chrI 24816 . A G 1582 filter AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.28;MQ0=33;QD=8.84;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:1,176:179:99:1615,203,0 chrI 24837 . C G 2408 filter AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.8909;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=12;QD=11.75;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,199:205:99:2441,302,0 chrI 24861 . A G 2271 filter AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=10;QD=10.61;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:2304,281,0 chrI 24863 . A G 2352 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.541;DP=227;Dels=0.00;FS=79.867;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=10;MQRankSum=4.794;QD=10.36;ReadPosRankSum=4.826;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:21,206:227:99:2385,288,0 chrI 24931 . G C 171.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;DP=296;Dels=0.00;FS=23.245;HaplotypeScore=166.1276;MLEAC=1;MLEAF=0.500;MQ=24.50;MQ0=22;MQRankSum=8.821;QD=0.58;ReadPosRankSum=-9.152;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:244,50:296:99:201,0,1826 chrI 24937 . A G 1603.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.362;DP=301;Dels=0.00;FS=16.880;HaplotypeScore=78.7992;MLEAC=1;MLEAF=0.500;MQ=25.09;MQ0=20;MQRankSum=-7.605;QD=5.33;ReadPosRankSum=10.241;SB=-1.470e+02 GT:AD:DP:GQ:PL 0/1:83,214:301:99:1633,0,817 chrI 24956 . T C 946.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.738;DP=284;Dels=0.00;FS=3.583;HaplotypeScore=11.8302;MLEAC=1;MLEAF=0.500;MQ=29.28;MQ0=16;MQRankSum=-6.160;QD=3.33;ReadPosRankSum=3.588;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:146,135:284:99:976,0,1601 chrI 24958 . A G 874.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.287;DP=286;Dels=0.00;FS=1.929;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=29.23;MQ0=16;MQRankSum=-6.201;QD=3.06;ReadPosRankSum=2.549;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:154,132:286:99:904,0,1957 chrI 24966 . A G 561.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.652;DP=305;Dels=0.00;FS=11.496;HaplotypeScore=27.3115;MLEAC=1;MLEAF=0.500;MQ=30.02;MQ0=17;MQRankSum=-6.951;QD=1.84;ReadPosRankSum=-2.083;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:184,115:305:99:591,0,2421 chrI 24971 . T C 455.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.657;DP=300;Dels=0.00;FS=22.572;HaplotypeScore=24.1568;MLEAC=1;MLEAF=0.500;MQ=30.98;MQ0=18;MQRankSum=-4.494;QD=1.52;ReadPosRankSum=-0.869;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:221,79:300:99:485,0,2972 chrI 24975 . T C 371.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.689;DP=290;Dels=0.00;FS=31.656;HaplotypeScore=12.5008;MLEAC=1;MLEAF=0.500;MQ=31.96;MQ0=13;MQRankSum=-5.098;QD=1.28;ReadPosRankSum=-4.376;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:212,78:290:99:401,0,3158 chrI 25070 . C T 942 filter AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=21.22;MQ0=15;QD=5.78;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,162:163:99:975,114,0 chrI 25129 . G A 332 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.32;MQ0=13;QD=8.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:42:365,42,0 chrI 25142 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.02;MQ0=5;QD=0.81;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,26:27:6:53,6,0 chrI 25151 . C T 97.26 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.60;MQ0=5;QD=3.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:15:130,15,0 chrI 25178 . G A 577 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.820;DP=94;Dels=0.00;FS=4.181;HaplotypeScore=46.3640;MLEAC=2;MLEAF=1.00;MQ=21.56;MQ0=12;MQRankSum=-0.125;QD=6.14;ReadPosRankSum=1.581;SB=-2.101e+01 GT:AD:DP:GQ:PL 1/1:12,82:94:72:610,72,0 chrI 25246 . A G 94.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.366;DP=137;Dels=0.00;FS=6.590;HaplotypeScore=68.9868;MLEAC=1;MLEAF=0.500;MQ=23.71;MQ0=10;MQRankSum=-3.779;QD=0.69;ReadPosRankSum=-2.999;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:70,66:137:99:124,0,648 chrI 25264 . T A 296.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;DP=90;Dels=0.00;FS=12.968;HaplotypeScore=80.4278;MLEAC=1;MLEAF=0.500;MQ=23.14;MQ0=5;MQRankSum=2.350;QD=3.29;ReadPosRankSum=-3.285;SB=-1.710e+02 GT:AD:DP:GQ:PL 0/1:44,46:90:99:326,0,162 chrI 25276 . A G 102.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.466;DP=62;Dels=0.00;FS=16.944;HaplotypeScore=14.6929;MLEAC=1;MLEAF=0.500;MQ=21.62;MQ0=5;MQRankSum=0.185;QD=1.65;ReadPosRankSum=-3.868;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:37,25:62:99:132,0,135 chrI 25278 . T G 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;DP=62;Dels=0.00;FS=16.944;HaplotypeScore=14.6929;MLEAC=1;MLEAF=0.500;MQ=21.62;MQ0=5;MQRankSum=0.442;QD=1.39;ReadPosRankSum=-3.964;SB=-5.901e+01 GT:AD:DP:GQ:PL 0/1:37,25:62:99:116,0,118 chrI 25287 . G A 75.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.553;DP=43;Dels=0.00;FS=10.537;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=21.77;MQ0=5;MQRankSum=-1.732;QD=1.74;ReadPosRankSum=5.137;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:15,28:43:30:105,0,30 chrI 25418 . T C 567 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=2;QD=18.90;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:72:600,72,0 chrI 25452 . T A 371 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.04;FS=0.000;HaplotypeScore=11.7917;MLEAC=2;MLEAF=1.00;MQ=25.58;MQ0=0;QD=13.74;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:48:404,48,0 chrI 25460 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.57;MQ0=0;QD=1.62;SB=-2.476e+01 GT:AD:DP:GQ:PL 1/1:0,10:11:6:49,6,0 chrI 25596 . G T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.43;MQ0=10;QD=0.90;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:10,10:22:6:51,6,0 chrI 25605 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.43;MQ0=10;QD=0.99;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:10,12:22:6:53,6,0 chrI 25608 . A T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.89;MQ0=9;QD=1.04;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:9,12:21:6:53,6,0 chrI 25644 . A G 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.118;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.84;MQ0=2;MQRankSum=2.003;QD=1.37;ReadPosRankSum=0.825;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:4,9:13:6:49,6,0 chrI 25647 . G C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.14;MQ0=2;QD=1.44;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:2,8:11:6:47,6,0 chrI 25650 . G A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.72;MQ0=2;QD=1.98;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:2,8:10:6:51,6,0 chrI 26961 . A G 14.91 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.27;MQ0=0;MQRankSum=-0.747;QD=1.86;ReadPosRankSum=-0.747;SB=1.65 GT:AD:DP:GQ:PL 1/1:1,7:8:6:46,6,0 chrI 26964 . A T 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=1.76;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:9:6:47,6,0 chrI 26973 . A G 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=3.54;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:71,9,0 chrI 26979 . G A 65.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=6.55;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:98,12,0 chrI 26981 . T C 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=6.15;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:94,12,0 chrI 26982 . G A 63.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=6.35;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:96,12,0 chrI 26983 . T G 64.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=6.45;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:97,12,0 chrI 26991 . C T 87.26 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=0;QD=3.36;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:15:120,15,0 chrI 26994 . A G 82.26 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.40;MQ0=0;QD=2.65;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,31:31:15:115,15,0 chrI 26997 . T C 78.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.452;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=0;MQRankSum=-0.140;QD=2.12;ReadPosRankSum=1.639;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:1,36:37:15:111,15,0 chrI 27005 . T C 229 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=0;MQRankSum=0.072;QD=4.77;ReadPosRankSum=1.660;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:1,47:48:33:262,33,0 chrI 27013 . C T 347 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.76;MQ0=0;QD=5.60;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:45:380,45,0 chrI 27027 . A T 728 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=0;QD=8.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:90:761,90,0 chrI 27031 . C T 762 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=0;QD=8.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:93:795,93,0 chrI 27035 . T C 713 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=0;QD=7.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:93:746,93,0 chrI 27036 . G A 746 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=0;QD=8.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:93:779,93,0 chrI 27045 . G A 747 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;QD=6.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,117:117:93:780,93,0 chrI 27060 . A T 816 filter AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;QD=6.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:849,99,0 chrI 27063 . G A 808 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.068;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;MQRankSum=2.313;QD=6.41;ReadPosRankSum=1.474;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,124:126:83:841,83,0 chrI 27072 . A G 731 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.962;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;MQRankSum=2.157;QD=5.80;ReadPosRankSum=0.732;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,124:126:77:764,77,0 chrI 27075 . G A 844 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.974;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=0;MQRankSum=2.192;QD=6.81;ReadPosRankSum=0.585;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,122:124:86:877,86,0 chrI 27078 . G A 676 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.414;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;MQRankSum=2.204;QD=6.15;ReadPosRankSum=0.414;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:2,108:110:71:709,71,0 chrI 27080 . C T 786 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.935;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;MQRankSum=2.315;QD=7.15;ReadPosRankSum=0.235;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,108:110:77:819,77,0 chrI 27081 . G A 540 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=4.91;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,108:110:69:573,69,0 chrI 27084 . G A 613 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.031;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;MQRankSum=2.388;QD=5.15;ReadPosRankSum=-0.672;SB=-6.525e-03 GT:AD:DP:GQ:PL 1/1:2,117:119:62:646,62,0 chrI 27090 . T C 615 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.367;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;MQRankSum=2.251;QD=4.96;ReadPosRankSum=-1.696;SB=-6.525e-03 GT:AD:DP:GQ:PL 1/1:2,122:124:62:648,62,0 chrI 27099 . T C 545 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.725;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;MQRankSum=2.335;QD=5.09;ReadPosRankSum=-2.013;SB=-6.563e-03 GT:AD:DP:GQ:PL 1/1:2,105:107:53:578,53,0 chrI 27105 . A G 482 filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=4.82;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,100:100:63:515,63,0 chrI 27126 . T C 193.64 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.824;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;MQRankSum=2.045;QD=2.89;ReadPosRankSum=0.792;SB=-6.469e-01 GT:AD:DP:GQ:PL 1/1:2,65:67:11:226,11,0 chrI 27129 . C G 229 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=3.82;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,60:60:33:262,33,0 chrI 27141 . G T 194.01 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.25;MQ0=0;QD=3.18;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,61:61:27:227,27,0 chrI 27151 . A G 161.03 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.35;MQ0=0;QD=2.64;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,61:61:24:194,24,0 chrI 27183 . G A 370 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.10;MQ0=0;QD=6.61;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:54:403,54,0 chrI 27186 . T C 479 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.67;MQ0=0;MQRankSum=1.164;QD=7.85;ReadPosRankSum=1.675;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:69:512,69,0 chrI 27188 . G A 573 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.64;MQ0=0;QD=8.68;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:81:606,81,0 chrI 27195 . T G 796 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=86;Dels=0.00;FS=2.608;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.29;MQ0=0;MQRankSum=-2.801;QD=9.26;ReadPosRankSum=2.754;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:3,83:86:99:829,108,0 chrI 27210 . A G 2061 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=14.51;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2094,263,0 chrI 27290 . C A 4496.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=18.8634;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;QD=19.21;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4496,516,0 chrI 27356 . T C 2124 filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=21.51;MQ0=9;QD=17.85;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2157,284,0 chrI 27357 . A G 2107 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.224;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.47;MQ0=9;MQRankSum=1.010;QD=18.01;ReadPosRankSum=0.991;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2140,281,0 chrI 27370 . G A 1970 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=121;Dels=0.00;FS=2.990;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.82;MQ0=10;MQRankSum=2.405;QD=16.28;ReadPosRankSum=-0.809;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2003,260,0 chrI 27380 . T G 2002 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=144;Dels=0.00;FS=6.094;HaplotypeScore=15.6317;MLEAC=2;MLEAF=1.00;MQ=24.36;MQ0=10;MQRankSum=-2.061;QD=13.90;ReadPosRankSum=2.932;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:3,139:144:99:2035,263,0 chrI 27476 . G A 1080 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=91;Dels=0.00;FS=35.319;HaplotypeScore=8.7079;MLEAC=2;MLEAF=1.00;MQ=23.10;MQ0=8;MQRankSum=1.143;QD=11.87;ReadPosRankSum=0.074;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,88:91:99:1113,135,0 chrI 27486 . G A 1080 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.875;DP=90;Dels=0.00;FS=75.930;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=22.87;MQ0=2;MQRankSum=1.406;QD=12.00;ReadPosRankSum=1.154;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,83:90:99:1113,102,0 chrI 27489 . G A 1075 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.827;DP=93;Dels=0.00;FS=98.734;HaplotypeScore=5.0704;MLEAC=2;MLEAF=1.00;MQ=23.04;MQ0=3;MQRankSum=1.853;QD=11.56;ReadPosRankSum=1.763;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:10,83:93:99:1108,102,0 chrI 27492 . A C 1009 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=94;Dels=0.00;FS=108.490;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=23.32;MQ0=4;MQRankSum=2.431;QD=10.73;ReadPosRankSum=1.901;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:13,81:94:76:1042,76,0 chrI 27498 . A T 1018 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.751;DP=94;Dels=0.00;FS=109.379;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=23.89;MQ0=4;MQRankSum=3.579;QD=10.83;ReadPosRankSum=3.116;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:16,78:94:73:1051,73,0 chrI 27504 . C A 979 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.805;DP=92;Dels=0.00;FS=132.689;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.06;MQ0=8;MQRankSum=3.567;QD=10.64;ReadPosRankSum=3.036;SB=-1.341e-02 GT:AD:DP:GQ:PL 1/1:18,73:92:31:1012,31,0 chrI 27505 . T G 967.19 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.026;DP=93;Dels=0.00;FS=141.191;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=23.99;MQ0=8;MQRankSum=3.856;QD=10.40;ReadPosRankSum=3.262;SB=-1.202e+00 GT:AD:DP:GQ:PL 1/1:20,73:93:8:999,8,0 chrI 27506 . T A 964.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.663;DP=94;Dels=0.00;FS=141.191;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=23.86;MQ0=9;MQRankSum=3.856;QD=10.26;ReadPosRankSum=3.237;SB=-4.137e+00 GT:AD:DP:GQ:PL 1/1:21,73:94:1:993,1,0 chrI 27507 . G A 956.12 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.442;DP=95;Dels=0.00;FS=141.191;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=23.73;MQ0=10;MQRankSum=3.856;QD=10.06;ReadPosRankSum=3.086;SB=-2.135e+00 GT:AD:DP:GQ:PL 1/1:22,73:95:5:987,5,0 chrI 27510 . T C 914.45 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.875;DP=112;Dels=0.00;FS=159.117;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=23.14;MQ0=11;MQRankSum=3.382;QD=8.16;ReadPosRankSum=1.932;SB=-1.465e+00 GT:AD:DP:GQ:PL 1/1:24,88:112:7:946,7,0 chrI 27522 . C T 1009.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.100;DP=127;Dels=0.00;FS=173.536;HaplotypeScore=5.4284;MLEAC=1;MLEAF=0.500;MQ=22.02;MQ0=17;MQRankSum=4.056;QD=7.94;ReadPosRankSum=1.423;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:36,91:127:41:1039,0,41 chrI 27540 . A G 1007.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.013;DP=129;Dels=0.00;FS=167.938;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=17;MQRankSum=3.704;QD=7.81;ReadPosRankSum=-3.149;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:35,94:129:46:1037,0,46 chrI 27543 . A G 946.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.803;DP=129;Dels=0.00;FS=167.938;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=17;MQRankSum=3.704;QD=7.33;ReadPosRankSum=-3.189;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:35,94:129:63:976,0,63 chrI 27561 . T G 521.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.434;DP=101;Dels=0.00;FS=139.096;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=20.01;MQ0=16;MQRankSum=2.358;QD=5.16;ReadPosRankSum=-0.923;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:35,66:101:99:551,0,106 chrI 27563 . C T 518.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.157;DP=101;Dels=0.00;FS=147.112;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=20.01;MQ0=16;MQRankSum=2.490;QD=5.13;ReadPosRankSum=-0.941;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:34,67:101:99:548,0,114 chrI 27573 . G A 351.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;DP=90;Dels=0.00;FS=125.798;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=20.06;MQ0=16;MQRankSum=1.989;QD=3.90;ReadPosRankSum=0.059;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:31,59:90:99:381,0,142 chrI 27576 . A G 323.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570;DP=83;Dels=0.00;FS=96.245;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=20.45;MQ0=15;MQRankSum=2.207;QD=3.89;ReadPosRankSum=-0.053;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:29,54:83:95:353,0,95 chrI 27582 . G A 323.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.130;DP=75;Dels=0.00;FS=91.356;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.09;MQ0=14;MQRankSum=2.259;QD=4.31;ReadPosRankSum=0.445;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:25,50:75:77:353,0,77 chrI 27585 . A G 312.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.505;DP=72;Dels=0.00;FS=76.926;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=19.93;MQ0=13;MQRankSum=1.283;QD=4.33;ReadPosRankSum=-0.192;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:23,49:72:65:342,0,65 chrI 27591 . T C 319.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.640;DP=66;Dels=0.00;FS=45.496;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=20.11;MQ0=12;MQRankSum=1.595;QD=4.83;ReadPosRankSum=-0.231;SB=-1.002e+01 GT:AD:DP:GQ:PL 0/1:20,46:66:40:349,0,40 chrI 27593 . A G 323.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;DP=66;Dels=0.00;FS=40.889;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=20.11;MQ0=12;MQRankSum=1.114;QD=4.89;ReadPosRankSum=0.720;SB=-3.102e+01 GT:AD:DP:GQ:PL 0/1:21,45:66:41:353,0,41 chrI 27597 . A T 325.05 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.016;DP=62;Dels=0.00;FS=23.881;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=20.67;MQ0=10;MQRankSum=2.194;QD=5.24;ReadPosRankSum=0.900;SB=-8.106e+01 GT:AD:DP:GQ:PL 0/1:18,44:62:17:355,0,17 chrI 27611 . C A 187.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.165;DP=41;Dels=0.00;FS=3.305;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.45;MQ0=3;MQRankSum=2.436;QD=4.56;ReadPosRankSum=0.000;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:5,36:41:27:220,27,0 chrI 27614 . T C 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.955;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.44;MQ0=1;MQRankSum=2.261;QD=2.00;ReadPosRankSum=2.563;SB=-1.459e+02 GT:AD:DP:GQ:PL 1/1:4,18:22:9:76,9,0 chrI 27616 . A G 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.646;DP=20;Dels=0.00;FS=2.831;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.35;MQ0=0;MQRankSum=2.011;QD=2.20;ReadPosRankSum=2.646;SB=-1.248e+02 GT:AD:DP:GQ:PL 1/1:3,17:20:9:76,9,0 chrI 27617 . T C 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.12;MQ0=0;QD=2.59;SB=-1.459e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:9:76,9,0 chrI 27619 . G T 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.12;MQ0=0;QD=2.59;SB=-1.559e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:9:76,9,0 chrI 27622 . T C 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.12;MQ0=0;QD=2.47;SB=-1.419e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:9:74,9,0 chrI 27624 . A G 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.12;MQ0=0;QD=2.53;SB=-1.488e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:9:75,9,0 chrI 27627 . A G 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.12;MQ0=0;QD=2.53;SB=-1.489e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:9:75,9,0 chrI 27630 . A G 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.12;MQ0=0;QD=2.53;SB=-1.509e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:9:75,9,0 chrI 27646 . T C 68.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=16.6168;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=0;MQRankSum=0.593;QD=0.94;ReadPosRankSum=1.685;SB=-2.985e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:12:101,12,0 chrI 27667 . A G 115.13 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;QD=1.27;SB=-1.211e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:18:148,18,0 chrI 27668 . A C 90.26 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=26.96;MQ0=1;QD=0.98;SB=-1.223e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:15:123,15,0 chrI 27681 . A G 256.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.425;DP=103;Dels=0.00;FS=52.560;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.34;MQ0=1;MQRankSum=2.743;QD=2.49;ReadPosRankSum=3.425;SB=-9.302e+01 GT:AD:DP:GQ:PL 0/1:6,97:103:75:286,0,75 chrI 27684 . A C 257.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.153;DP=102;Dels=0.00;FS=64.383;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.27;MQ0=1;MQRankSum=2.967;QD=2.52;ReadPosRankSum=3.814;SB=-7.202e+01 GT:AD:DP:GQ:PL 0/1:7,95:102:96:287,0,96 chrI 27685 . G T 270.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.484;DP=102;Dels=0.00;FS=64.383;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.27;MQ0=1;MQRankSum=2.967;QD=2.65;ReadPosRankSum=3.628;SB=-7.202e+01 GT:AD:DP:GQ:PL 0/1:7,95:102:84:300,0,84 chrI 27688 . A T 263.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.928;DP=112;Dels=0.00;FS=85.354;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.23;MQ0=1;MQRankSum=3.415;QD=2.35;ReadPosRankSum=3.427;SB=-6.602e+01 GT:AD:DP:GQ:PL 0/1:9,103:112:99:293,0,149 chrI 27693 . G C 224.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.563;DP=116;Dels=0.00;FS=103.948;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.20;MQ0=1;MQRankSum=3.816;QD=1.93;ReadPosRankSum=3.102;SB=-1.602e+01 GT:AD:DP:GQ:PL 0/1:11,105:116:99:254,0,186 chrI 27699 . T G 249.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.748;DP=106;Dels=0.00;FS=149.988;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.09;MQ0=1;MQRankSum=4.529;QD=2.35;ReadPosRankSum=3.702;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:14,92:106:99:279,0,236 chrI 27701 . A T 259.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;DP=107;Dels=0.00;FS=178.118;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.06;MQ0=1;MQRankSum=5.003;QD=2.42;ReadPosRankSum=3.662;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:16,91:107:99:289,0,254 chrI 27702 . A T 190.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.849;DP=107;Dels=0.00;FS=178.118;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.11;MQ0=1;MQRankSum=4.913;QD=1.78;ReadPosRankSum=3.354;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:16,91:107:99:220,0,286 chrI 27703 . C G 215.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;DP=107;Dels=0.00;FS=178.118;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.11;MQ0=1;MQRankSum=4.913;QD=2.01;ReadPosRankSum=3.018;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:16,91:107:99:245,0,273 chrI 27716 . T G 263.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;DP=116;Dels=0.00;FS=206.027;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.07;MQ0=2;MQRankSum=5.521;QD=2.27;ReadPosRankSum=-1.333;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,96:116:99:293,0,270 chrI 27723 . A G 238.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.162;DP=89;Dels=0.00;FS=181.835;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.97;MQ0=3;MQRankSum=5.950;QD=2.67;ReadPosRankSum=-1.927;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:21,68:89:99:268,0,318 chrI 27725 . C T 237.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.235;DP=89;Dels=0.00;FS=181.835;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.97;MQ0=3;MQRankSum=5.950;QD=2.66;ReadPosRankSum=-2.511;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:21,68:89:99:267,0,309 chrI 27726 . A G 236.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.264;DP=89;Dels=0.00;FS=181.835;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.97;MQ0=3;MQRankSum=5.950;QD=2.65;ReadPosRankSum=-3.158;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:21,68:89:99:266,0,325 chrI 27729 . C A 239.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;DP=93;Dels=0.00;FS=183.836;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.73;MQ0=5;MQRankSum=5.984;QD=2.57;ReadPosRankSum=-4.288;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:23,70:93:99:269,0,302 chrI 27732 . G T 246.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;DP=93;Dels=0.00;FS=183.836;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.73;MQ0=5;MQRankSum=5.984;QD=2.65;ReadPosRankSum=-5.198;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:22,71:93:99:276,0,320 chrI 27738 . A C 227.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.442;DP=87;Dels=0.00;FS=177.673;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.68;MQ0=5;MQRankSum=6.066;QD=2.61;ReadPosRankSum=-6.089;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:23,64:87:99:257,0,321 chrI 27744 . T C 200.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.721;DP=77;Dels=0.00;FS=163.654;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.95;MQ0=7;MQRankSum=5.825;QD=2.60;ReadPosRankSum=-5.355;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:25,52:77:99:230,0,333 chrI 27747 . T A 193.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;DP=70;Dels=0.00;FS=154.131;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.78;MQ0=7;MQRankSum=5.896;QD=2.76;ReadPosRankSum=-4.602;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:25,45:70:99:223,0,331 chrI 27749 . C T 184.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.896;DP=70;Dels=0.00;FS=154.131;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.78;MQ0=7;MQRankSum=5.896;QD=2.63;ReadPosRankSum=-4.420;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:25,45:70:99:214,0,299 chrI 27750 . G A 171.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.218;DP=70;Dels=0.00;FS=154.131;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.78;MQ0=7;MQRankSum=5.896;QD=2.44;ReadPosRankSum=-4.252;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:25,45:70:99:201,0,335 chrI 27756 . A G 169.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.202;DP=67;Dels=0.00;FS=149.662;HaplotypeScore=11.8941;MLEAC=1;MLEAF=0.500;MQ=25.62;MQ0=7;MQRankSum=5.815;QD=2.52;ReadPosRankSum=-3.670;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:25,42:67:99:199,0,337 chrI 27759 . C T 295.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.767;DP=67;Dels=0.00;FS=149.662;HaplotypeScore=12.6828;MLEAC=1;MLEAF=0.500;MQ=25.62;MQ0=7;MQRankSum=-5.831;QD=4.40;ReadPosRankSum=3.476;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:42,25:67:99:325,0,194 chrI 27761 . G A 187.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.211;DP=62;Dels=0.00;FS=141.586;HaplotypeScore=13.4715;MLEAC=1;MLEAF=0.500;MQ=25.33;MQ0=7;MQRankSum=5.659;QD=3.02;ReadPosRankSum=-2.987;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:25,37:62:99:217,0,289 chrI 27804 . C A 74.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=41;Dels=0.00;FS=10.792;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.61;MQ0=5;MQRankSum=1.540;QD=1.82;ReadPosRankSum=1.540;SB=-3.052e+01 GT:AD:DP:GQ:PL 1/1:6,35:41:12:107,12,0 chrI 27810 . T C 279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.12;MQ0=2;MQRankSum=-0.301;QD=5.81;ReadPosRankSum=1.356;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:3,45:48:39:312,39,0 chrI 27816 . G A 437 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=2;QD=6.72;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:57:470,57,0 chrI 27822 . T C 581 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=72;Dels=0.00;FS=5.484;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.05;MQ0=1;MQRankSum=-2.930;QD=8.07;ReadPosRankSum=2.815;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:3,68:72:78:614,78,0 chrI 27823 . C A 642 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.24;MQ0=0;QD=8.79;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:84:675,84,0 chrI 27825 . C T 665 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.02;MQ0=0;QD=8.64;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:87:698,87,0 chrI 27914 . T C 3463.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=20.74;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3463,408,0 chrI 27970 . T G 1167 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=14.9593;MLEAC=2;MLEAF=1.00;MQ=42.07;MQ0=0;QD=14.96;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1200,141,0 chrI 27983 . T A 989 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.72;MQ0=0;QD=15.70;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1022,114,0 chrI 27997 . T C 931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;MQRankSum=-1.626;QD=14.32;ReadPosRankSum=1.679;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:964,117,0 chrI 28007 . G C 1119 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=58.5835;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;QD=13.99;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1152,138,0 chrI 28167 . A T 1815 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.31;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1848,213,0 chrI 28318 . T A 1965 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.26;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1998,228,0 chrI 28321 . G A 1980 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5184;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=18.33;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2013,243,0 chrI 28352 . C T 2339 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.34;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2372,270,0 chrI 28385 . A G 2101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=117;Dels=0.00;FS=3.048;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-1.503;QD=17.96;ReadPosRankSum=0.999;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2134,252,0 chrI 28433 . G A 1947 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.71;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1980,228,0 chrI 28458 . C T 1776 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=18.69;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1809,207,0 chrI 28517 . A G 2275 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=19.78;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2308,276,0 chrI 28529 . T C 2376 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=20.48;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2409,288,0 chrI 28666 . A G 2090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=112;Dels=0.00;FS=6.218;HaplotypeScore=5.2089;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=-0.824;QD=18.66;ReadPosRankSum=2.406;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2123,258,0 chrI 28673 . A T 2103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.6812;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=0.299;QD=18.13;ReadPosRankSum=-0.597;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2136,252,0 chrI 28684 . A G 2148 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9191;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=18.52;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2181,261,0 chrI 28874 . T A 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=119;Dels=0.00;FS=6.019;HaplotypeScore=8.4404;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.653;QD=21.19;ReadPosRankSum=2.924;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2555,297,0 chrI 28926 . A T 2699 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=119.2413;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.70;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2732,318,0 chrI 28980 . G A 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=144;Dels=0.00;FS=2.586;HaplotypeScore=18.4946;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.497;QD=18.10;ReadPosRankSum=2.951;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:2640,309,0 chrI 29970 . C T 1577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.162;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=34.30;MQ0=0;MQRankSum=-1.294;QD=19.23;ReadPosRankSum=0.855;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:1,79:82:99:1610,183,0 chrI 29984 . T G 165.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.024;DP=69;Dels=0.00;FS=35.828;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;MQRankSum=-0.320;QD=2.39;ReadPosRankSum=-5.237;SB=2.97 GT:AD:DP:GQ:PL 1/1:58,11:69:24:198,24,0 chrI 30004 . T C 1126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=17.901;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;MQRankSum=-1.858;QD=15.01;ReadPosRankSum=2.384;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1159,144,0 chrI 30011 . A T 1405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;MQRankSum=-0.524;QD=16.34;ReadPosRankSum=1.692;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1438,168,0 chrI 30018 . G A 1414 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=15.71;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1447,165,0 chrI 30036 . G A 1324 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.9788;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;QD=13.79;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1357,159,0 chrI 30044 . A T 1180 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=12.55;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1213,144,0 chrI 30051 . C T 1071 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=11.90;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1104,132,0 chrI 30055 . C T 1054 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=11.46;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1087,126,0 chrI 30125 . G T 241 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=7.77;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:33:274,33,0 chrI 30153 . G A 173.03 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=0;QD=8.24;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:206,24,0 chrI 30164 . G A 123.13 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=0;QD=7.24;SB=-1.241e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:18:156,18,0 chrI 30190 . A G 298 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=16.56;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:42:331,42,0 chrI 30198 . T C 219 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=0;QD=12.88;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:33:252,33,0 chrI 30202 . C T 174.01 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.03;MQ0=0;QD=10.88;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:27:207,27,0 chrI 30226 . G A 872 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=0;QD=21.27;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:905,108,0 chrI 30335 . C T 1575 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.6940;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;QD=18.31;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1608,189,0 chrI 30355 . G A 907 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.52;MQ0=0;QD=12.42;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:940,117,0 chrI 30361 . A T 933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=10.122;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;MQRankSum=0.241;QD=12.96;ReadPosRankSum=1.684;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:966,114,0 chrI 30371 . C A 704 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.36;MQ0=0;QD=10.83;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:90:737,90,0 chrI 30382 . C A 533 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=8.74;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:69:566,69,0 chrI 30388 . G A 539 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;QD=9.14;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:66:572,66,0 chrI 30427 . G C 619 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.74;MQ0=0;QD=8.84;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:84:652,84,0 chrI 30435 . G A 815 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=0;QD=10.45;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:848,102,0 chrI 30468 . G C 1454 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.85;MQ0=0;QD=13.10;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1487,185,0 chrI 30478 . C T 1648 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;QD=13.51;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1681,201,0 chrI 30490 . A G 2083 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.18;MQ0=0;QD=15.66;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2116,266,0 chrI 30522 . A G 2962 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;QD=20.15;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2995,357,0 chrI 30585 . T A 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=140;Dels=0.00;FS=2.789;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;MQRankSum=0.571;QD=20.56;ReadPosRankSum=1.572;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2911,348,0 chrI 30601 . C T 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;MQRankSum=-0.451;QD=19.10;ReadPosRankSum=-0.626;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,118:122:99:2363,282,0 chrI 30605 . C T 2263 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=0;QD=18.55;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2296,270,0 chrI 30661 . T A 1164 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.65;MQ0=0;QD=10.58;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1197,144,0 chrI 30662 . T G 1139 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.35;MQ0=0;QD=10.55;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1172,147,0 chrI 30669 . T C 1067 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.77;MQ0=0;QD=10.16;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1100,138,0 chrI 30670 . T C 1062 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.77;MQ0=0;QD=10.11;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1095,138,0 chrI 30713 . T G 2005 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.3425;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=15.79;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2038,246,0 chrI 30747 . A C 2552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;MQRankSum=1.679;QD=19.48;ReadPosRankSum=1.706;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2585,309,0 chrI 30749 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=20.89;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2769,318,0 chrI 30817 . T C 2062 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=12.2988;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=20.22;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2095,249,0 chrI 30832 . C G 1930 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.04;FS=0.000;HaplotypeScore=43.1058;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;QD=18.38;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,98:101:99:1963,231,0 chrI 30930 . T A 1215 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=18.69;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1248,144,0 chrI 30979 . T C 818 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;QD=16.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:49:99:851,105,0 chrI 30987 . T G 727 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;QD=16.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:93:760,93,0 chrI 31018 . G A 614 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=20.47;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:75:647,75,0 chrI 31019 . G T 622 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=20.73;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:75:655,75,0 chrI 31107 . C A 341 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=21.31;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:42:374,42,0 chrI 31124 . T C 88.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=12.61;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,6:7:15:121,15,0 chrI 31126 . T C 40.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.83;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:73,9,0 chrI 31391 . A G 1835 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1868,228,0 chrI 31529 . A G 1237 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=13.74;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1270,159,0 chrI 31608 . C T 2088 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.27;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2121,246,0 chrI 31755 . C T 3104 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.12;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3137,366,0 chrI 31821 . C T 2434 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.80;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2467,282,0 chrI 31917 . C T 4373.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.31;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4373,501,0 chrI 32271 . G A 4070.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=16.22;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,245:251:99:4070,483,0 chrI 32280 . C T 4811.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=13.7684;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.02;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:4811,558,0 chrI 32511 . C T 8173.01 filter AC=2;AF=1.00;AN=2;DP=401;Dels=0.00;FS=0.000;HaplotypeScore=12.7678;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.38;SB=-4.041e+03 GT:AD:DP:GQ:PL 1/1:0,399:401:99:8173,968,0 chrI 32574 . T G 6783.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=24.2550;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=19.22;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,350:353:99:6783,824,0 chrI 32595 . T C 6500.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.94;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,324:326:99:6500,779,0 chrI 32652 . A C 6610.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=376;Dels=0.00;FS=0.000;HaplotypeScore=32.8226;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.451;QD=17.58;ReadPosRankSum=2.981;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:3,368:376:99:6610,791,0 chrI 32776 . C T 3057 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.1215;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=19.72;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,149:155:99:3090,354,0 chrI 32989 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=135.1134;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.74;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2974,339,0 chrI 33113 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=20.85;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3181,366,0 chrI 33140 . G A 2928 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=18.65;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2961,342,0 chrI 33147 . G T 3011 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=18.03;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3044,354,0 chrI 33347 . T A 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.00;FS=3.151;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=0.221;QD=18.34;ReadPosRankSum=1.714;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3447,408,0 chrI 33348 . G T 3877.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=20.84;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3877,450,0 chrI 33512 . A G 4597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=262;Dels=0.00;FS=8.017;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;MQRankSum=-2.290;QD=17.55;ReadPosRankSum=2.421;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:2,260:262:99:4597,563,0 chrI 33513 . T G 4740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.973;DP=262;Dels=0.00;FS=5.458;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;MQRankSum=-1.174;QD=18.09;ReadPosRankSum=2.927;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:3,258:262:99:4740,563,0 chrI 33546 . C T 3815.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=14.84;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:3815,438,0 chrI 33548 . A C 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=262;Dels=0.00;FS=4.221;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;MQRankSum=-1.719;QD=13.90;ReadPosRankSum=1.719;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:1,258:262:99:3642,434,0 chrI 33612 . A G 5707.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=19.4585;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.02;SB=-3.081e+03 GT:AD:DP:GQ:PL 1/1:0,299:300:99:5707,683,0 chrI 33690 . G A 6351.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=22.9232;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.13;SB=-3.122e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:6351,738,0 chrI 33730 . G A 6164.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=38.1516;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=21.18;SB=-3.278e+03 GT:AD:DP:GQ:PL 1/1:0,289:291:99:6164,711,0 chrI 33864 . G C 6404.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.21;SB=-3.060e+03 GT:AD:DP:GQ:PL 1/1:0,300:302:99:6404,787,0 chrI 33939 . G A 5829.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=21.2176;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.38;SB=-3.071e+03 GT:AD:DP:GQ:PL 1/1:0,281:285:99:5829,692,0 chrI 34308 . C T 7122.01 PASS AC=2;AF=1.00;AN=2;DP=351;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.29;SB=-4.068e+03 GT:AD:DP:GQ:PL 1/1:0,351:351:99:7122,825,0 chrI 34314 . G A 6639.01 PASS AC=2;AF=1.00;AN=2;DP=354;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=18.75;SB=-3.986e+03 GT:AD:DP:GQ:PL 1/1:0,352:354:99:6639,779,0 chrI 34878 . C T 3502.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=19.79;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3502,402,0 chrI 35059 . G A 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;MQRankSum=0.329;QD=18.53;ReadPosRankSum=-1.553;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2182,246,0 chrI 35061 . A G 2000 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=17.09;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2033,249,0 chrI 35070 . C T 1881 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=16.65;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1914,219,0 chrI 35337 . A T 3396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=3.882;HaplotypeScore=9.2604;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-1.485;QD=22.05;ReadPosRankSum=1.687;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3396,393,0 chrI 35421 . G A 5446.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=24.1463;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.25;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:0,265:269:99:5446,653,0 chrI 35565 . A G 4513.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=18.35;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:4513,545,0 chrI 35568 . A G 4504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-1.363;QD=18.16;ReadPosRankSum=1.689;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:1,245:248:99:4504,536,0 chrI 35631 . G C 3829.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=19.7572;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=16.29;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,231:235:99:3829,470,0 chrI 35751 . T C 4647.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.0313;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.45;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4647,560,0 chrI 35818 . A G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=22.18;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3349,399,0 chrI 36517 . A G 2298 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.15;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2331,279,0 chrI 36524 . C T 2360 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.50;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2393,276,0 chrI 36898 . C T 2507 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.9684;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.72;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2540,300,0 chrI 37294 . T C 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=111;Dels=0.00;FS=2.922;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.831;QD=22.08;ReadPosRankSum=2.383;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2484,300,0 chrI 37369 . C T 2609 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.29;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2642,300,0 chrI 37414 . T C 2272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=12.3637;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=0.385;QD=20.84;ReadPosRankSum=1.604;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2305,279,0 chrI 37460 . T C 2295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.333;DP=113;Dels=0.00;FS=5.304;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;MQRankSum=1.360;QD=20.31;ReadPosRankSum=3.380;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:4,109:113:99:2328,279,0 chrI 37521 . A G 3204 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.08;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3237,395,0 chrI 37553 . A G 3815.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.68;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3815,458,0 chrI 37595 . G A 3952.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.08;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:3952,444,0 chrI 37682 . T C 4113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=191;Dels=0.00;FS=2.563;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.186;QD=21.53;ReadPosRankSum=2.910;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:3,186:191:99:4113,494,0 chrI 37976 . C A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.6976;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3264,378,0 chrI 38120 . A T 4466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=197;Dels=0.00;FS=11.040;HaplotypeScore=10.5528;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=-0.760;QD=22.67;ReadPosRankSum=1.740;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:3,194:197:99:4466,513,0 chrI 38361 . C T 4961.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=13.0362;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.57;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4961,573,0 chrI 38765 . G A 4777.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=15.3403;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.75;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4777,552,0 chrI 39009 . T C 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=3.366;HaplotypeScore=9.1958;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.993;QD=18.99;ReadPosRankSum=1.654;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3380,407,0 chrI 39162 . C G 3775.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=18.78;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3775,455,0 chrI 39167 . A G 3863.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.5374;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.71;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:3863,467,0 chrI 39238 . T C 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=20.4497;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.329;QD=19.11;ReadPosRankSum=1.710;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3053,371,0 chrI 39338 . C T 3107 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.54;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3140,366,0 chrI 39779 . C T 2892 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.22;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2925,345,0 chrI 39834 . G T 2937 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.8747;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.44;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2970,342,0 chrI 40237 . C T 3648.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8103;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3648,426,0 chrI 40668 . G A 4735.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=20.2433;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,208:212:99:4735,543,0 chrI 40914 . C G 3868.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.57;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3868,470,0 chrI 41271 . A C 4431.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.7805;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.51;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4431,536,0 chrI 41514 . A G 5032.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=22.8719;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.62;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,241:244:99:5032,599,0 chrI 41736 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=4.434;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-0.093;QD=17.54;ReadPosRankSum=1.713;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3280,390,0 chrI 41739 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=187;Dels=0.00;FS=4.566;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.913;QD=17.29;ReadPosRankSum=1.471;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3268,390,0 chrI 41883 . C T 2792 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.31;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2825,327,0 chrI 41987 . C T 2026 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.67;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2059,246,0 chrI 42023 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.89;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2441,282,0 chrI 42115 . T C 2933 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=19.55;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2966,357,0 chrI 42257 . G A 4086.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=20.13;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4086,471,0 chrI 42290 . A T 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=246;Dels=0.00;FS=4.178;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;MQRankSum=-1.549;QD=16.91;ReadPosRankSum=1.690;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:1,245:246:99:4160,489,0 chrI 42304 . G A 3876.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=2.6421;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=15.69;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:3876,450,0 chrI 42306 . G A 3793.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=15.74;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:3793,429,0 chrI 42315 . C T 3534.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=7.8501;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=14.25;SB=-2.728e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:3534,405,0 chrI 42410 . G A 4550.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=7.6495;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=17.04;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,263:267:99:4550,522,0 chrI 42413 . G A 4404.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=7.6437;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=16.81;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:4404,507,0 chrI 42635 . C T 3975.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.3797;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.18;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,195:197:99:3975,459,0 chrI 43004 . G A 3175 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.52;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3208,372,0 chrI 43137 . C T 5428.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=5.1312;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.54;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5428,630,0 chrI 43157 . C T 5622.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.06;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:5622,662,0 chrI 43565 . A G 4228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.420;QD=21.03;ReadPosRankSum=1.715;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4228,503,0 chrI 43850 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=18.87;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3109,363,0 chrI 43856 . A C 2897 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=17.14;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:2930,356,0 chrI 44546 . G A 5319.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=15.9189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5319,609,0 chrI 44588 . A G 5087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.347;DP=247;Dels=0.00;FS=8.178;HaplotypeScore=16.6079;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.381;QD=20.60;ReadPosRankSum=3.361;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:4,241:247:99:5087,614,0 chrI 44891 . A G 3156 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=18.67;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3189,383,0 chrI 44935 . C A 2792 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2825,324,0 chrI 45024 . G A 4654.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.9124;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.27;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4654,525,0 chrI 45198 . G A 1793 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.15;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1826,219,0 chrI 45439 . G A 1944 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.68;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1977,228,0 chrI 45546 . A T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=144.2754;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=19.25;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3446,399,0 chrI 45831 . G C 3399.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.65;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3399,407,0 chrI 46375 . A T 7587.01 filter AC=2;AF=1.00;AN=2;DP=393;Dels=0.00;FS=0.000;HaplotypeScore=27.1431;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.31;SB=-4.189e+03 GT:AD:DP:GQ:PL 1/1:0,393:393:99:7587,870,0 chrI 46669 . A G 7796.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.363;DP=373;Dels=0.00;FS=8.964;HaplotypeScore=29.8897;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-1.493;QD=20.90;ReadPosRankSum=3.424;SB=-4.046e+03 GT:AD:DP:GQ:PL 1/1:4,367:373:99:7796,938,0 chrI 46894 . A G 3981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=1.316;QD=18.01;ReadPosRankSum=2.405;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:3981,479,0 chrI 46912 . T G 3689.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.45;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:3689,449,0 chrI 46966 . T C 2956 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=18.95;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2989,354,0 chrI 47044 . A C 2707 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.35;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2740,324,0 chrI 47170 . T C 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.423;QD=21.81;ReadPosRankSum=1.681;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2978,356,0 chrI 47254 . G A 3087 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3120,357,0 chrI 47413 . A G 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=139;Dels=0.00;FS=8.199;HaplotypeScore=8.9569;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-2.361;QD=21.12;ReadPosRankSum=2.396;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2968,351,0 chrI 47512 . A T 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.006;QD=20.56;ReadPosRankSum=1.713;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3824,450,0 chrI 47660 . T C 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=190;Dels=0.00;FS=2.861;HaplotypeScore=8.8807;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.343;QD=21.11;ReadPosRankSum=2.424;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4011,479,0 chrI 47690 . T C 3574.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.40;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3574,423,0 chrI 47896 . C T 3997.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.8028;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.96;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3997,465,0 chrI 48115 . G C 2644 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.39;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2677,324,0 chrI 48166 . C T 2883 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.25;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2916,333,0 chrI 48229 . C T 2779 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.03;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2812,333,0 chrI 48302 . G A 2251 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.24;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2284,261,0 chrI 48526 . T C 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.4509;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.373;QD=21.77;ReadPosRankSum=1.710;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3461,411,0 chrI 48580 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.41;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3512,411,0 chrI 48751 . T C 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=198;Dels=0.00;FS=6.082;HaplotypeScore=20.6764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.685;QD=20.27;ReadPosRankSum=2.944;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:4014,482,0 chrI 48890 . C T 4198.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.64;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4198,486,0 chrI 49238 . T C 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=0.291;QD=20.75;ReadPosRankSum=1.701;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2378,288,0 chrI 49247 . C T 2411 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.78;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2444,282,0 chrI 49288 . C T 2659 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=19.27;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2692,318,0 chrI 49403 . C T 2990 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.62;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3023,354,0 chrI 49416 . C T 2987 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.64;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3020,342,0 chrI 49505 . T C 2815 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.0911;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.33;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2848,342,0 chrI 49871 . C T 2382 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.89;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2415,279,0 chrI 49994 . T C 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-1.732;QD=20.68;ReadPosRankSum=1.639;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2349,285,0 chrI 50177 . C G 3096 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.50;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3129,386,0 chrI 50197 . G A 3065 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=20.71;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3098,351,0 chrI 50204 . A G 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=3.274;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=0.215;QD=18.68;ReadPosRankSum=1.664;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2891,347,0 chrI 50212 . A G 2674 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=18.19;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2707,327,0 chrI 50343 . A G 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.105;QD=21.25;ReadPosRankSum=1.707;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2966,348,0 chrI 50411 . C T 2572 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.8567;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=21.26;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2605,297,0 chrI 50444 . C T 1986 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=17.73;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2019,237,0 chrI 50456 . G A 2126 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=17.15;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2159,246,0 chrI 50498 . A G 2649 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=19.34;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2682,315,0 chrI 50660 . T A 2522 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=18.1858;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=18.01;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2555,303,0 chrI 50663 . C T 2735 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4873;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.99;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2768,327,0 chrI 50960 . C T 2816 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=19.69;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2849,330,0 chrI 50974 . C T 2675 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=17.95;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2708,309,0 chrI 51026 . G A 3165 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=15.82;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3198,372,0 chrI 51029 . A G 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=3.872;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;MQRankSum=0.450;QD=15.47;ReadPosRankSum=1.715;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:3128,369,0 chrI 51095 . G A 3696.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=19.35;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3696,423,0 chrI 51287 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=4.110;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.889;QD=21.10;ReadPosRankSum=1.709;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3261,387,0 chrI 51321 . T C 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=149;Dels=0.00;FS=10.522;HaplotypeScore=7.0517;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=1.385;QD=18.50;ReadPosRankSum=2.926;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:2790,338,0 chrI 51347 . C A 3172 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=18.02;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3205,369,0 chrI 51371 . A C 3107 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.4687;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=17.26;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3140,375,0 chrI 51434 . A G 2501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.095;DP=135;Dels=0.00;FS=12.639;HaplotypeScore=13.3980;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-2.005;QD=18.53;ReadPosRankSum=3.393;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:4,131:135:99:2534,311,0 chrI 51551 . T C 2243 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=17.94;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2276,273,0 chrI 51774 . T C 1664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=3.056;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.241;QD=19.13;ReadPosRankSum=2.393;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1697,198,0 chrI 51817 . A G 134.06 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=1.14;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:21:167,21,0 chrI 51951 . T G 2303 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=16.6729;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.68;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2336,293,0 chrI 52217 . C G 3670.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.4404;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.39;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,175:180:99:3670,435,0 chrI 52632 . T C 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=140;Dels=0.00;FS=11.752;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-1.268;QD=18.66;ReadPosRankSum=2.848;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:3,136:140:99:2645,315,0 chrI 52650 . C T 2747 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=19.62;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2780,318,0 chrI 52849 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=8.150;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.385;QD=21.55;ReadPosRankSum=2.417;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3265,390,0 chrI 52876 . C T 3358.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.69;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3358,387,0 chrI 53146 . T G 3527.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.75;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3527,422,0 chrI 53220 . C T 3514.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3514,405,0 chrI 53843 . C T 3552.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.34;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3552,411,0 chrI 54136 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.79;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3509,399,0 chrI 54175 . A G 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=162;Dels=0.00;FS=3.680;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.108;QD=21.14;ReadPosRankSum=1.646;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3425,419,0 chrI 54244 . A G 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=3.561;HaplotypeScore=13.5767;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.784;QD=21.29;ReadPosRankSum=1.691;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3576,428,0 chrI 54508 . A G 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.5782;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.372;QD=19.25;ReadPosRankSum=1.698;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:3908,464,0 chrI 54806 . T C 1956 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.5484;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=17.01;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:1989,237,0 chrI 55010 . G A 2259 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.29;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2292,264,0 chrI 55171 . A G 2377 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.14;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2410,285,0 chrI 55277 . C G 2051 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.35;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2084,252,0 chrI 55279 . A T 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=-0.160;QD=19.93;ReadPosRankSum=1.636;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2185,252,0 chrI 55508 . T C 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.950;DP=102;Dels=0.00;FS=6.141;HaplotypeScore=5.1197;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.210;QD=18.86;ReadPosRankSum=2.450;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:3,98:102:99:1957,210,0 chrI 55525 . A G 2028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.600;QD=19.50;ReadPosRankSum=1.699;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2061,249,0 chrI 55688 . T C 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=96;Dels=0.00;FS=3.343;HaplotypeScore=5.4638;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.696;QD=19.75;ReadPosRankSum=1.696;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1929,225,0 chrI 55793 . T C 1815 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.62;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1848,225,0 chrI 56107 . T C 3028 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.46;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3061,366,0 chrI 56144 . T G 2850 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=18.87;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2883,350,0 chrI 56159 . T A 3063 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.51;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3096,360,0 chrI 56249 . G T 2992 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.37;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3025,354,0 chrI 56399 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.19;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3256,369,0 chrI 56786 . G A 2689 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.49;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2722,315,0 chrI 57455 . C T 5430.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=16.8817;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.55;SB=-3.014e+03 GT:AD:DP:GQ:PL 1/1:0,246:252:99:5430,621,0 chrI 59349 . A C 5154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=261;Dels=0.00;FS=9.989;HaplotypeScore=21.3979;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.043;QD=19.75;ReadPosRankSum=2.925;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:3,253:261:99:5154,623,0 chrI 59659 . C G 6425.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=16.7525;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.46;SB=-3.372e+03 GT:AD:DP:GQ:PL 1/1:0,310:314:99:6425,770,0 chrI 59916 . G C 3913.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=19.0498;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.00;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:3913,476,0 chrI 59976 . T C 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-0.913;QD=18.45;ReadPosRankSum=1.615;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,147:152:99:2838,344,0 chrI 59985 . T C 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=149;Dels=0.00;FS=3.222;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=1.002;QD=17.28;ReadPosRankSum=1.661;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:2608,312,0 chrI 60198 . C T 3574.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.34;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3574,411,0 chrI 60267 . G C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.72;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3269,395,0 chrI 60417 . C T 5719.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=16.4387;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,239:242:99:5719,651,0 chrI 60774 . T C 8292.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.713;DP=401;Dels=0.00;FS=11.875;HaplotypeScore=27.0488;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.993;QD=20.68;ReadPosRankSum=3.799;SB=-4.453e+03 GT:AD:DP:GQ:PL 1/1:5,395:401:99:8292,1003,0 chrI 60915 . C T 7858.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.015;DP=378;Dels=0.00;FS=0.000;HaplotypeScore=32.9319;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.037;QD=20.79;ReadPosRankSum=0.382;SB=-4.189e+03 GT:AD:DP:GQ:PL 1/1:1,374:378:99:7858,904,0 chrI 61293 . C T 8306.01 filter AC=2;AF=1.00;AN=2;DP=376;Dels=0.00;FS=0.000;HaplotypeScore=18.5606;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=22.09;SB=-4.145e+03 GT:AD:DP:GQ:PL 1/1:0,376:376:99:8306,977,0 chrI 61451 . G A 9519.01 filter AC=2;AF=1.00;AN=2;DP=454;Dels=0.00;FS=0.000;HaplotypeScore=23.6140;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.97;SB=-4.972e+03 GT:AD:DP:GQ:PL 1/1:0,454:454:99:9519,1103,0 chrI 61585 . C T 10409.01 filter AC=2;AF=1.00;AN=2;DP=488;Dels=0.00;FS=0.000;HaplotypeScore=30.2698;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.33;SB=-5.690e+03 GT:AD:DP:GQ:PL 1/1:0,488:488:99:10409,1197,0 chrI 61990 . T C 3936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=193;Dels=0.00;FS=3.030;HaplotypeScore=16.8998;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.357;QD=20.39;ReadPosRankSum=2.398;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:2,189:193:99:3936,488,0 chrI 62053 . G T 3824.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=17.7334;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.90;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3824,450,0 chrI 62131 . C T 4150.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=19.04;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4150,483,0 chrI 62134 . T C 4071.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=18.09;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4071,488,0 chrI 62308 . T C 6934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=20.2777;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.922;QD=21.14;ReadPosRankSum=2.009;SB=-3.589e+03 GT:AD:DP:GQ:PL 1/1:3,320:328:99:6934,810,0 chrI 62361 . T C 5879.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.432;DP=281;Dels=0.00;FS=6.615;HaplotypeScore=18.8695;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.890;QD=20.92;ReadPosRankSum=2.406;SB=-3.236e+03 GT:AD:DP:GQ:PL 1/1:2,278:281:99:5879,698,0 chrI 62565 . G A 3333.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.83;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3333,387,0 chrI 62654 . C T 2492 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=17.67;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2525,297,0 chrI 62726 . G A 4168.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.4546;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.82;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4168,474,0 chrI 62950 . C T 6373.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=25.8052;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.04;SB=-3.553e+03 GT:AD:DP:GQ:PL 1/1:0,317:318:99:6373,746,0 chrI 63012 . C G 5850.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=11.4588;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=18.63;SB=-3.624e+03 GT:AD:DP:GQ:PL 1/1:0,311:314:99:5850,707,0 chrI 63025 . T C 5549.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=18.75;SB=-3.239e+03 GT:AD:DP:GQ:PL 1/1:0,296:296:99:5549,671,0 chrI 63385 . T C 2770 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.65;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2803,333,0 chrI 63520 . T A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.8928;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.84;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3608,420,0 chrI 63658 . G A 2807 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.6218;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.11;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2840,324,0 chrI 64094 . C T 3135 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.4466;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3168,366,0 chrI 64477 . C T 4326.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.52;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4326,507,0 chrI 64663 . A G 4233.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.5463;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=17.86;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:4233,506,0 chrI 64676 . C T 4514.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.3680;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=19.54;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:4514,513,0 chrI 64781 . T C 4452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.138;QD=21.82;ReadPosRankSum=1.698;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4452,522,0 chrI 65365 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.40;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3115,366,0 chrI 65417 . G A 2666 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2699,312,0 chrI 66003 . T C 3225.28 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4460;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.94;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3258,392,0 chrI 66129 . A G 3910.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.00;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3910,470,0 chrI 66648 . T C 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.198;DP=154;Dels=0.00;FS=2.406;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.653;QD=20.94;ReadPosRankSum=3.402;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:4,150:154:99:3258,392,0 chrI 67120 . G A 3871.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=20.8562;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.39;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3871,444,0 chrI 67269 . A G 4051.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=17.85;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:0,221:227:99:4051,482,0 chrI 67275 . G A 4036.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=15.9058;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=17.03;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:0,233:237:99:4036,462,0 chrI 67476 . C G 5500.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=22.8170;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.37;SB=-2.946e+03 GT:AD:DP:GQ:PL 1/1:0,266:270:99:5500,656,0 chrI 67715 . C T 3121 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.01;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3154,366,0 chrI 68194 . C T 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=4.740;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.064;QD=22.81;ReadPosRankSum=1.707;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3226,378,0 chrI 68481 . C T 2467 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.1454;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=18.98;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2500,285,0 chrI 68501 . T G 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.643;DP=143;Dels=0.00;FS=7.991;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=1.797;QD=18.35;ReadPosRankSum=3.775;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:5,138:143:99:2657,326,0 chrI 68725 . G C 6369.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.16;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,306:316:99:6369,773,0 chrI 68739 . A G 6151.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=16.3327;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=20.10;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,304:306:99:6151,737,0 chrI 68869 . A G 6746.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=19.3446;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.50;SB=-3.915e+03 GT:AD:DP:GQ:PL 1/1:0,328:329:99:6746,809,0 chrI 69064 . A G 5982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=23.6088;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.149;QD=20.14;ReadPosRankSum=1.720;SB=-3.149e+03 GT:AD:DP:GQ:PL 1/1:1,296:297:99:5982,722,0 chrI 69112 . T C 5433.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=32.2951;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.67;SB=-3.014e+03 GT:AD:DP:GQ:PL 1/1:0,289:291:99:5433,659,0 chrI 69280 . G A 5997.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=13.8669;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.27;SB=-3.216e+03 GT:AD:DP:GQ:PL 1/1:1,278:282:99:5997,690,0 chrI 69603 . T C 3162 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7065;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.67;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3195,375,0 chrI 69675 . G A 1088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=102;Dels=0.00;FS=14.801;HaplotypeScore=12.2257;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=3.970;QD=10.67;ReadPosRankSum=4.617;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:11,91:102:70:1121,70,0 chrI 69767 . G A 1475 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=18.44;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1508,174,0 chrI 69951 . A T 3170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=5.321;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=0.836;QD=22.17;ReadPosRankSum=1.684;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3203,363,0 chrI 69981 . T C 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.617;DP=173;Dels=0.00;FS=4.874;HaplotypeScore=15.9682;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=-0.509;QD=20.60;ReadPosRankSum=3.718;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:5,166:173:99:3563,428,0 chrI 70024 . T C 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=-1.065;QD=21.14;ReadPosRankSum=1.560;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3425,413,0 chrI 70045 . A G 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=4.692;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=1.326;QD=19.80;ReadPosRankSum=1.711;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3240,401,0 chrI 70071 . C T 3483.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=20.13;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3483,405,0 chrI 70345 . G T 2604 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.5351;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=18.47;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:2637,306,0 chrI 70362 . G A 2427 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=7.8094;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=18.25;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2460,285,0 chrI 70480 . C A 2598 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8968;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.53;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2631,300,0 chrI 70497 . A G 2053 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.03;FS=0.000;HaplotypeScore=7.6751;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=17.11;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2086,249,0 chrI 70621 . T C 2800 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.71;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2833,336,0 chrI 70943 . C T 486 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=11.85;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:60:519,60,0 chrI 71008 . T C 1082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=56.3388;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=0.541;QD=16.91;ReadPosRankSum=1.678;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1115,132,0 chrI 71601 . G A 1711 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.46;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1744,207,0 chrI 73490 . T C 1789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=0.427;QD=23.23;ReadPosRankSum=1.552;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1822,219,0 chrI 73633 . T A 1855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-1.505;QD=17.34;ReadPosRankSum=1.667;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1888,216,0 chrI 73641 . T C 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.708;QD=17.04;ReadPosRankSum=1.702;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2010,243,0 chrI 73682 . A G 2294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=127;Dels=0.00;FS=3.045;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.165;QD=18.06;ReadPosRankSum=2.392;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2327,284,0 chrI 73720 . C A 2302 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.3379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2335,270,0 chrI 73855 . T C 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=3.155;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.341;QD=20.36;ReadPosRankSum=1.704;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2517,303,0 chrI 73970 . A T 2750 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=23.31;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2783,324,0 chrI 74208 . C T 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=1.426;QD=17.74;ReadPosRankSum=1.549;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3067,354,0 chrI 74209 . A C 2836 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=16.88;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2869,347,0 chrI 74227 . G A 3029 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=17.31;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3062,351,0 chrI 74242 . T C 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=179;Dels=0.00;FS=2.921;HaplotypeScore=6.6692;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=-0.624;QD=15.70;ReadPosRankSum=2.354;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:2843,344,0 chrI 74538 . T C 2875 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.7840;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.97;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2908,350,0 chrI 74612 . A C 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.221;QD=19.86;ReadPosRankSum=1.710;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3131,380,0 chrI 74786 . G A 2308 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.3436;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.07;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2341,267,0 chrI 75073 . G A 2440 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.59;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2473,291,0 chrI 75211 . T C 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.920;QD=20.91;ReadPosRankSum=2.385;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3191,383,0 chrI 75277 . A G 4515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=212;Dels=0.00;FS=6.692;HaplotypeScore=25.6287;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.134;QD=21.30;ReadPosRankSum=2.403;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:2,207:212:99:4515,539,0 chrI 75912 . A G 4195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=202;Dels=0.00;FS=6.174;HaplotypeScore=20.5078;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.191;QD=20.77;ReadPosRankSum=2.340;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4195,503,0 chrI 76030 . T C 3676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=223;Dels=0.00;FS=3.873;HaplotypeScore=11.3771;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.640;QD=16.48;ReadPosRankSum=1.701;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:1,221:223:99:3676,440,0 chrI 76051 . C T 4047.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=7.4216;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=17.00;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:4047,462,0 chrI 76096 . T C 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=3.838;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=0.813;QD=15.64;ReadPosRankSum=1.697;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:3130,366,0 chrI 76117 . T C 2893 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=16.07;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:2926,353,0 chrI 76289 . G A 3001 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.41;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3034,348,0 chrI 76417 . T C 5762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=250;Dels=0.00;FS=2.848;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.227;QD=23.05;ReadPosRankSum=2.420;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:2,247:250:99:5762,689,0 chrI 76496 . A G 3569.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=18.69;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3569,425,0 chrI 76497 . A G 3523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-0.099;QD=18.35;ReadPosRankSum=1.110;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:2,186:192:99:3523,417,0 chrI 76528 . T C 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=216;Dels=0.00;FS=2.985;HaplotypeScore=9.7491;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.051;QD=17.70;ReadPosRankSum=2.393;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:3823,458,0 chrI 76840 . G A 3077 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.24;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3110,354,0 chrI 76861 . C T 3480.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=19.66;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3480,402,0 chrI 77073 . A G 3915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=186;Dels=0.00;FS=3.303;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=0.395;QD=21.05;ReadPosRankSum=1.713;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:3915,462,0 chrI 77115 . G T 4568.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.39;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4568,537,0 chrI 77152 . A G 4138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=193;Dels=0.00;FS=3.030;HaplotypeScore=13.3274;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.566;QD=21.44;ReadPosRankSum=2.297;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4138,500,0 chrI 77433 . G A 2695 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=60.54;MQ0=0;QD=19.11;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2728,309,0 chrI 77533 . A G 2489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.475;DP=200;Dels=0.00;FS=2.687;HaplotypeScore=1.8991;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=-2.116;QD=12.44;ReadPosRankSum=2.055;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:2522,288,0 chrI 77554 . T G 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.5461;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-0.983;QD=15.14;ReadPosRankSum=1.499;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:3198,383,0 chrI 77737 . C T 4718.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.84;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4718,558,0 chrI 78187 . T C 4604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.733;DP=214;Dels=0.00;FS=2.575;HaplotypeScore=22.4511;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.286;QD=21.51;ReadPosRankSum=2.939;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:3,211:214:99:4604,554,0 chrI 78461 . C T 7143.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=23.3007;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.32;SB=-3.708e+03 GT:AD:DP:GQ:PL 1/1:0,333:335:99:7143,816,0 chrI 78560 . T C 5644.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=16.7603;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.52;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,273:275:99:5644,662,0 chrI 78700 . A G 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.031;DP=223;Dels=0.00;FS=14.673;HaplotypeScore=14.3942;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.946;QD=18.61;ReadPosRankSum=4.089;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:6,217:223:99:4151,497,0 chrI 78910 . T C 4142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-1.449;QD=19.63;ReadPosRankSum=1.715;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:1,207:211:99:4142,486,0 chrI 78929 . G A 4095.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.07;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4095,471,0 chrI 78970 . A G 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=200;Dels=0.00;FS=2.400;HaplotypeScore=6.5211;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=1.696;QD=17.94;ReadPosRankSum=2.731;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:3,195:200:99:3587,426,0 chrI 78973 . G A 3516.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.01;FS=0.000;HaplotypeScore=6.4328;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=18.03;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3516,402,0 chrI 79012 . T C 4072.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.3532;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.48;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4072,488,0 chrI 79085 . C T 5004.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.64;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5004,573,0 chrI 79449 . T C 3468.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.52;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3468,431,0 chrI 79659 . A T 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=4.919;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.290;QD=23.55;ReadPosRankSum=1.709;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3532,408,0 chrI 79680 . T G 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-0.542;QD=21.69;ReadPosRankSum=1.679;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2875,342,0 chrI 79924 . A G 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=142;Dels=0.00;FS=3.041;HaplotypeScore=9.7978;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.427;QD=22.33;ReadPosRankSum=2.380;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3204,386,0 chrI 80499 . C T 4157.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.8901;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.88;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4157,474,0 chrI 80554 . G A 3341.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.69;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3341,384,0 chrI 80946 . G A 4115.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.9043;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.43;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4115,471,0 chrI 81253 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=171;Dels=0.00;FS=3.587;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.502;QD=19.25;ReadPosRankSum=1.650;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3291,390,0 chrI 81604 . T C 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=203;Dels=0.00;FS=3.023;HaplotypeScore=14.9917;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;MQRankSum=-1.554;QD=19.99;ReadPosRankSum=2.401;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4057,500,0 chrI 81691 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=177;Dels=0.00;FS=5.832;HaplotypeScore=10.8235;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.121;QD=18.97;ReadPosRankSum=2.925;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:3,172:176:99:3358,404,0 chrI 81731 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.0044;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.13;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3291,393,0 chrI 81841 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=3.310;HaplotypeScore=9.7859;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.934;QD=19.75;ReadPosRankSum=1.711;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3278,390,0 chrI 82076 . G C 4142.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=20.01;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,201:207:99:4142,497,0 chrI 82099 . C T 4898.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.2415;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.67;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4898,573,0 chrI 82244 . A G 4854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=242;Dels=0.00;FS=3.028;HaplotypeScore=16.7630;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.221;QD=20.06;ReadPosRankSum=2.378;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:2,237:242:99:4854,581,0 chrI 82290 . G T 4665.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=11.9791;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.20;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4665,537,0 chrI 82323 . G A 4901.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=17.9346;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=19.76;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:4901,587,0 chrI 82379 . G A 5026.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=15.1432;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.85;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5026,576,0 chrI 82662 . A G 4255.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.28;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4255,504,0 chrI 82711 . A G 3680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=4.387;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.652;QD=21.15;ReadPosRankSum=1.712;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3680,452,0 chrI 83309 . T C 4686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=213;Dels=0.00;FS=2.405;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-2.057;QD=22.00;ReadPosRankSum=2.948;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:3,209:213:99:4686,546,0 chrI 83335 . C G 4322.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=19.47;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4322,527,0 chrI 83337 . A G 4329.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.59;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4329,518,0 chrI 83575 . A G 4796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=15.9137;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=1.539;QD=20.58;ReadPosRankSum=1.673;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:4796,575,0 chrI 83613 . T C 4702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=224;Dels=0.00;FS=6.118;HaplotypeScore=22.0305;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.652;QD=20.99;ReadPosRankSum=2.384;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:4702,566,0 chrI 83903 . T C 5940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=276;Dels=0.00;FS=2.712;HaplotypeScore=11.7669;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.165;QD=21.52;ReadPosRankSum=2.396;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:2,273:276:99:5940,713,0 chrI 84046 . G A 8615.01 filter AC=2;AF=1.00;AN=2;DP=403;Dels=0.00;FS=0.000;HaplotypeScore=30.0589;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-3.821e+03 GT:AD:DP:GQ:PL 1/1:0,400:403:99:8615,1001,0 chrI 84108 . A G 6451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=328;Dels=0.00;FS=3.146;HaplotypeScore=18.7290;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.021;QD=19.67;ReadPosRankSum=1.721;SB=-3.664e+03 GT:AD:DP:GQ:PL 1/1:1,325:328:99:6451,773,0 chrI 84167 . T C 5307.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=22.6062;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.95;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:5307,641,0 chrI 84349 . A G 4732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=231;Dels=0.00;FS=2.893;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.599;QD=20.48;ReadPosRankSum=2.396;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:4732,566,0 chrI 84438 . G C 3347.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.2298;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.49;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,176:181:99:3347,396,0 chrI 84858 . C A 3038 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.9135;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3071,360,0 chrI 85034 . C T 4019.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.08;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4019,462,0 chrI 85234 . G A 4326.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.4546;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.30;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4326,492,0 chrI 85265 . A C 3946.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.10;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3946,470,0 chrI 85373 . T C 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.706;DP=181;Dels=0.00;FS=17.674;HaplotypeScore=19.1348;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.264;QD=19.97;ReadPosRankSum=3.768;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:5,174:181:99:3614,434,0 chrI 85436 . A T 4500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=210;Dels=0.00;FS=3.181;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.650;QD=21.43;ReadPosRankSum=1.699;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4500,519,0 chrI 85480 . C T 4230.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=29.1812;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.84;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4230,492,0 chrI 86018 . T G 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=3.669;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.680;QD=22.47;ReadPosRankSum=1.706;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3089,363,0 chrI 86597 . A G 3187 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3220,389,0 chrI 86648 . A G 2818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=145;Dels=0.00;FS=3.033;HaplotypeScore=8.2536;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.452;QD=19.43;ReadPosRankSum=2.381;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:2851,336,0 chrI 86849 . C T 2823 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2856,324,0 chrI 86939 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.8816;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.27;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3032,354,0 chrI 86963 . G A 2939 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.9065;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=19.72;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2972,348,0 chrI 87548 . A G 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=193;Dels=0.00;FS=3.032;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.884;QD=20.70;ReadPosRankSum=2.373;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:3996,485,0 chrI 87602 . G A 3585.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.49;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3585,417,0 chrI 87608 . A T 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=3.277;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=1.134;QD=20.18;ReadPosRankSum=1.691;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3411,396,0 chrI 87859 . T G 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=138;Dels=0.00;FS=2.956;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.155;QD=19.75;ReadPosRankSum=2.413;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:3,133:138:99:2758,330,0 chrI 88008 . A G 3274.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.2857;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.42;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3274,395,0 chrI 88212 . C T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.6337;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.36;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3289,384,0 chrI 88393 . A C 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-0.388;QD=19.35;ReadPosRankSum=1.702;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,115:119:99:2336,282,0 chrI 88445 . A T 3082 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.70;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3115,360,0 chrI 88569 . G A 2444 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.63;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2477,285,0 chrI 88638 . A G 3103 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.4769;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.15;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3136,383,0 chrI 88645 . G C 3189 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.33;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3222,392,0 chrI 88995 . G A 3779.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.10;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3779,444,0 chrI 89430 . C T 2975 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3008,348,0 chrI 89762 . T C 3446.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3446,408,0 chrI 89805 . C T 2986 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.80;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3019,351,0 chrI 89900 . T C 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=3.802;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-1.059;QD=19.19;ReadPosRankSum=1.684;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:2816,341,0 chrI 90106 . A G 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=0.206;QD=17.77;ReadPosRankSum=1.585;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2130,252,0 chrI 90114 . G C 2000 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=17.24;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2033,243,0 chrI 90138 . A G 1802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=3.288;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=1.640;QD=15.95;ReadPosRankSum=1.701;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1835,219,0 chrI 90168 . A G 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.650;QD=16.71;ReadPosRankSum=1.624;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2189,261,0 chrI 90330 . G T 2729 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=20.83;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2762,327,0 chrI 90357 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=22.72;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2828,321,0 chrI 90387 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=19.86;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2237,255,0 chrI 90510 . G C 2968 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3001,362,0 chrI 90665 . C T 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.076;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.0278;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.157;QD=21.19;ReadPosRankSum=0.000;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2873,330,0 chrI 90924 . A G 2751 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2784,330,0 chrI 90981 . T C 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.631;QD=22.01;ReadPosRankSum=1.705;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2872,342,0 chrI 91110 . G A 2595 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.8179;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.27;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2628,306,0 chrI 91173 . G A 3686.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3686,429,0 chrI 91614 . A G 2993 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.50;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3026,374,0 chrI 91665 . G A 3767.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.0435;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.29;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:3767,423,0 chrI 91791 . A C 5071.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.78;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,239:244:99:5071,620,0 chrI 91812 . G C 4697.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=6.5854;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.16;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:4697,569,0 chrI 91938 . A T 5504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=265;Dels=0.00;FS=2.789;HaplotypeScore=13.5348;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.803;QD=20.77;ReadPosRankSum=2.393;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:2,263:265:99:5504,636,0 chrI 92064 . A G 5416.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.66;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:5416,638,0 chrI 92115 . G C 3218.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.76;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3251,387,0 chrI 92310 . G T 2100 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.02;FS=0.000;HaplotypeScore=83.7306;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.43;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2133,243,0 chrI 92368 . A T 2332 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.00;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2365,279,0 chrI 92532 . C T 1920 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.21;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1953,222,0 chrI 92549 . T C 1754 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=19.07;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1787,216,0 chrI 92703 . G T 2207 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=21.85;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2240,258,0 chrI 92722 . G A 1942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=-0.509;QD=19.04;ReadPosRankSum=1.562;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1975,237,0 chrI 92724 . T G 1988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=0.577;QD=19.88;ReadPosRankSum=1.697;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2021,243,0 chrI 92891 . C T 4176.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.20;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4176,480,0 chrI 92934 . G A 4127.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=20.84;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4127,474,0 chrI 92941 . A G 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=195;Dels=0.00;FS=8.527;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=-1.184;QD=19.18;ReadPosRankSum=2.424;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:3740,446,0 chrI 92955 . A G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=4.476;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;MQRankSum=-0.683;QD=18.61;ReadPosRankSum=1.713;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:3462,419,0 chrI 92983 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=15.3434;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=17.00;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:3553,408,0 chrI 93115 . A G 5712.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=18.1673;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.31;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:5712,683,0 chrI 93184 . C T 6414.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=14.3810;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.82;SB=-3.056e+03 GT:AD:DP:GQ:PL 1/1:1,305:308:99:6414,764,0 chrI 93265 . G A 6450.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=16.6895;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.08;SB=-3.613e+03 GT:AD:DP:GQ:PL 1/1:0,306:306:99:6450,735,0 chrI 93424 . C T 5713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=17.0586;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=0.210;QD=20.33;ReadPosRankSum=1.695;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:1,280:281:99:5713,636,0 chrI 93460 . T C 4429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=254;Dels=0.00;FS=8.809;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=-1.222;QD=17.44;ReadPosRankSum=2.400;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:2,250:254:99:4429,527,0 chrI 93466 . A G 4109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=241;Dels=0.00;FS=2.716;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-0.385;QD=17.05;ReadPosRankSum=2.429;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:2,238:241:99:4109,500,0 chrI 93563 . G A 3693.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.72;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3693,440,0 chrI 93733 . G A 3292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=212;Dels=0.00;FS=4.584;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.391;QD=15.53;ReadPosRankSum=-0.577;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,203:212:99:3292,387,0 chrI 93745 . G A 3170 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=14.3451;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=14.15;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,210:224:99:3203,375,0 chrI 93789 . T A 4108.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=23.4912;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=15.68;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:4108,468,0 chrI 93865 . G T 5047.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=18.76;SB=-3.209e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5047,579,0 chrI 94220 . G A 2727 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.54;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2760,315,0 chrI 94285 . T C 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.375;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.531;QD=21.38;ReadPosRankSum=1.704;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2705,327,0 chrI 94472 . G A 2112 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.03;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2145,246,0 chrI 94682 . G A 3200 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3233,384,0 chrI 94767 . C G 4263.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.1697;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=21.75;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4263,509,0 chrI 94863 . A G 4181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=196;Dels=0.00;FS=7.389;HaplotypeScore=11.0949;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-0.570;QD=21.33;ReadPosRankSum=2.425;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4181,509,0 chrI 94915 . A G 4872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=220;Dels=0.00;FS=4.286;HaplotypeScore=12.0428;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;MQRankSum=-1.307;QD=22.15;ReadPosRankSum=1.716;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4872,581,0 chrI 95018 . T C 4501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=213;Dels=0.00;FS=3.019;HaplotypeScore=7.5096;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=-1.193;QD=21.13;ReadPosRankSum=2.357;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4501,542,0 chrI 95043 . A T 4334.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=20.25;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4334,507,0 chrI 95055 . G A 4114.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=18.87;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4114,480,0 chrI 95073 . T A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=17.73;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3404,390,0 chrI 95116 . T C 2501 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;QD=14.46;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:2534,303,0 chrI 95139 . G A 2456 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=38.10;MQ0=0;QD=15.45;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2489,285,0 chrI 95159 . G C 2088 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.23;MQ0=0;QD=13.74;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2121,258,0 chrI 95163 . T C 2269 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.46;MQ0=0;QD=14.64;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2302,273,0 chrI 95169 . G A 2300 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.84;MQ0=0;QD=15.03;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2333,267,0 chrI 95190 . T C 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=7.808;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;MQRankSum=-1.116;QD=15.84;ReadPosRankSum=1.647;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,162:163:99:2615,312,0 chrI 95238 . A T 3539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=0.334;QD=21.32;ReadPosRankSum=1.690;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3539,402,0 chrI 95327 . C T 1737 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=17.72;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1770,213,0 chrI 95373 . G A 773 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.8004;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=11.37;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:93:806,93,0 chrI 95376 . T C 643 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=0;QD=9.32;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:84:676,84,0 chrI 95388 . A G 546 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;QD=7.38;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:72:579,72,0 chrI 95391 . T C 651 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=33.86;MQ0=0;QD=8.80;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:84:684,84,0 chrI 95412 . G C 1070 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;QD=12.89;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1103,132,0 chrI 95448 . G A 1893 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=18.74;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1926,219,0 chrI 95552 . G C 2665 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=22.02;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2698,324,0 chrI 95748 . C A 3014 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3047,360,0 chrI 96047 . C A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.88;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3347,390,0 chrI 96079 . A G 3627.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.84;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3627,432,0 chrI 96092 . G A 4302.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.4574;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.68;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4302,501,0 chrI 96512 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.8700;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.449;QD=21.45;ReadPosRankSum=1.689;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3453,419,0 chrI 97377 . C T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=17.5405;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.01;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3656,420,0 chrI 97709 . T A 3707.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.7176;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.88;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3707,429,0 chrI 97849 . C T 2495 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2528,297,0 chrI 98347 . A G 2263 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.76;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2296,273,0 chrI 98419 . A T 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=136;Dels=0.00;FS=3.789;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.284;QD=22.18;ReadPosRankSum=1.706;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3049,351,0 chrI 98636 . A T 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.4087;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.735;QD=21.75;ReadPosRankSum=1.680;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2947,342,0 chrI 98885 . C T 2159 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.99;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2192,249,0 chrI 99107 . A G 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=132;Dels=0.00;FS=3.849;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.013;QD=21.28;ReadPosRankSum=1.679;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2842,339,0 chrI 99244 . G A 3500.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.97;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3500,399,0 chrI 99374 . A G 3829.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=19.8224;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.84;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:3829,461,0 chrI 99440 . C T 4576.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.0085;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.11;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4576,537,0 chrI 99471 . A G 4096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=213;Dels=0.00;FS=3.031;HaplotypeScore=16.9337;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.029;QD=19.23;ReadPosRankSum=2.403;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:2,209:213:99:4096,491,0 chrI 99521 . G A 5087.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=8.5432;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.76;SB=-2.962e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5087,588,0 chrI 99545 . A G 4741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=234;Dels=0.00;FS=6.048;HaplotypeScore=6.4540;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.622;QD=20.26;ReadPosRankSum=2.918;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:3,229:234:99:4741,569,0 chrI 99610 . A T 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.9189;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.458;QD=18.22;ReadPosRankSum=1.712;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3240,387,0 chrI 99896 . C T 2107 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.88;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2140,252,0 chrI 99929 . A G 2033 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.13;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2066,246,0 chrI 100000 . A T 1544 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=49.1350;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=16.60;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1577,186,0 chrI 100063 . A T 1346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.353;QD=17.95;ReadPosRankSum=1.637;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1379,162,0 chrI 100273 . G A 4008.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.98;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4008,465,0 chrI 100333 . G A 4589.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=6.6731;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.22;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:0,222:227:99:4589,543,0 chrI 100840 . C T 4581.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.31;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4581,525,0 chrI 101177 . G C 2082 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=19.83;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2115,252,0 chrI 101193 . T C 1855 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=18.19;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1888,233,0 chrI 101198 . A G 1792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-1.490;QD=18.47;ReadPosRankSum=2.928;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:3,94:97:99:1825,213,0 chrI 101230 . C G 1025 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=17.37;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1058,129,0 chrI 101371 . A T 1843 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.75;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1876,216,0 chrI 101471 . G A 1444 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=16.60;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1477,180,0 chrI 101547 . G C 3358.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.95;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3358,410,0 chrI 101607 . A G 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=4.582;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.347;QD=21.75;ReadPosRankSum=1.706;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2969,354,0 chrI 101712 . G A 3696.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.87;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3696,426,0 chrI 102345 . C T 2688 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.06;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2721,309,0 chrI 102348 . A G 2535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.174;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-1.450;QD=18.78;ReadPosRankSum=1.706;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2568,306,0 chrI 102486 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.12;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2968,339,0 chrI 102699 . G A 3360.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.11;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3360,390,0 chrI 102819 . A G 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=162;Dels=0.00;FS=3.038;HaplotypeScore=8.9515;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.100;QD=20.53;ReadPosRankSum=1.710;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,158:162:99:3326,401,0 chrI 102864 . T A 2952 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.36;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2985,345,0 chrI 103068 . A G 2407 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.23;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2440,296,0 chrI 103110 . C T 2833 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.6456;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.68;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2866,333,0 chrI 103141 . A G 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=145;Dels=0.00;FS=6.111;HaplotypeScore=4.8499;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=0.263;QD=18.03;ReadPosRankSum=2.399;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2647,318,0 chrI 103146 . T C 2637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=148;Dels=0.00;FS=3.027;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-0.507;QD=17.82;ReadPosRankSum=2.416;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2670,323,0 chrI 103170 . T A 2632 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=18.54;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2665,309,0 chrI 103246 . T A 2430 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.5528;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2463,282,0 chrI 103307 . G T 2575 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.93;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2608,303,0 chrI 103724 . T C 2276 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.96;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2309,282,0 chrI 103782 . T C 2692 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.0435;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.89;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2725,330,0 chrI 103899 . T C 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=132;Dels=0.00;FS=2.876;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.251;QD=19.53;ReadPosRankSum=2.412;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2611,315,0 chrI 103902 . G A 2685 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.89;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2718,312,0 chrI 104042 . T G 4414.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.9948;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.41;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4414,522,0 chrI 104469 . T C 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.227;DP=152;Dels=0.00;FS=8.947;HaplotypeScore=12.0746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.771;QD=19.30;ReadPosRankSum=3.262;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:4,147:152:99:2967,359,0 chrI 105050 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.2534;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.27;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2968,345,0 chrI 105800 . C A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.2950;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.63;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3507,402,0 chrI 106085 . T C 1703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=3.059;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=0.097;QD=18.92;ReadPosRankSum=1.693;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1736,207,0 chrI 106104 . C T 1405 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=15.27;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1438,171,0 chrI 106112 . C T 1649 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=17.18;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1682,195,0 chrI 106156 . T C 1615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.136;QD=15.83;ReadPosRankSum=1.698;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1648,204,0 chrI 106827 . G A 3395.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.85;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3395,393,0 chrI 106989 . C T 2886 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.24;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2919,342,0 chrI 107001 . C T 2618 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=18.18;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2651,303,0 chrI 107028 . C T 2655 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=17.94;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2688,309,0 chrI 107078 . A G 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=159;Dels=0.00;FS=3.791;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.710;QD=19.30;ReadPosRankSum=1.688;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3101,372,0 chrI 107190 . G A 4614.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.9816;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.69;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4614,543,0 chrI 107538 . G A 4251.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.37;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4251,483,0 chrI 107970 . A G 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.8649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.409;QD=19.22;ReadPosRankSum=1.713;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3441,416,0 chrI 108108 . A G 3275.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.0348;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.27;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3275,401,0 chrI 108389 . C T 4943.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.9046;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.86;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:4943,582,0 chrI 109720 . A C 4923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=269;Dels=0.00;FS=3.013;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.225;QD=18.30;ReadPosRankSum=2.348;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:2,265:269:99:4923,599,0 chrI 109735 . A G 4745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=266;Dels=0.00;FS=6.051;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.342;QD=17.84;ReadPosRankSum=2.928;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:3,261:266:99:4745,575,0 chrI 109795 . A G 5841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.325;DP=309;Dels=0.00;FS=8.598;HaplotypeScore=22.5378;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.874;QD=18.90;ReadPosRankSum=3.410;SB=-2.972e+03 GT:AD:DP:GQ:PL 1/1:4,302:309:99:5841,710,0 chrI 109887 . T C 5549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=290;Dels=0.00;FS=17.613;HaplotypeScore=22.4964;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=0.181;QD=19.13;ReadPosRankSum=3.363;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:4,281:290:99:5549,671,0 chrI 109945 . G A 5602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.318;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=21.5793;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=0.614;QD=22.23;ReadPosRankSum=0.462;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:1,250:252:99:5602,620,0 chrI 109984 . G A 5575.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=16.5441;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.61;SB=-2.968e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5575,651,0 chrI 110014 . T C 4774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=237;Dels=0.00;FS=3.499;HaplotypeScore=11.4102;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=0.258;QD=20.14;ReadPosRankSum=1.673;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:1,234:237:99:4774,572,0 chrI 110101 . G A 3178 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.64;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3211,369,0 chrI 110131 . T C 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=4.453;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;MQRankSum=-1.186;QD=19.86;ReadPosRankSum=1.713;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:3675,435,0 chrI 110146 . G A 3977.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=19.69;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:3977,456,0 chrI 110186 . A G 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=0.206;QD=18.19;ReadPosRankSum=1.714;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:3548,414,0 chrI 110200 . T G 3409.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=16.88;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:3409,416,0 chrI 110595 . A G 2313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=0.765;QD=20.84;ReadPosRankSum=1.701;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2346,282,0 chrI 110728 . A G 1321 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=3;QD=15.36;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1354,165,0 chrI 110856 . T C 2599 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2632,320,0 chrI 111180 . T C 5307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.312;DP=258;Dels=0.00;FS=8.187;HaplotypeScore=19.7165;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.580;QD=20.57;ReadPosRankSum=3.413;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:4,254:258:99:5307,635,0 chrI 111245 . T C 5091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.071;DP=233;Dels=0.00;FS=14.659;HaplotypeScore=16.5256;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.507;QD=21.85;ReadPosRankSum=4.132;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:6,226:233:99:5091,608,0 chrI 111362 . C T 4749.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.12;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:4749,555,0 chrI 111401 . A G 4798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.776;QD=19.12;ReadPosRankSum=1.718;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:1,249:251:99:4798,561,0 chrI 111655 . G A 4602.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.9441;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.50;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4602,531,0 chrI 111719 . G A 4746.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=26.9885;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.91;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4746,552,0 chrI 111983 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.39;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3347,384,0 chrI 111986 . T C 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=181;Dels=0.00;FS=8.349;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.756;QD=17.01;ReadPosRankSum=2.422;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:2,175:181:99:3112,366,0 chrI 112136 . G T 3907.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.8181;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.07;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3907,459,0 chrI 112184 . T C 4353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.0407;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.222;QD=22.32;ReadPosRankSum=2.386;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4353,510,0 chrI 112232 . G A 4775.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.58;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:4775,563,0 chrI 112256 . G A 5038.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.29;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:5038,570,0 chrI 112339 . A G 6063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.696;DP=292;Dels=0.00;FS=12.450;HaplotypeScore=29.2995;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.479;QD=20.76;ReadPosRankSum=2.955;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:3,285:292:99:6063,716,0 chrI 112373 . C G 6519.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=20.0856;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.18;SB=-2.837e+03 GT:AD:DP:GQ:PL 1/1:0,320:323:99:6519,782,0 chrI 112433 . A G 6186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=322;Dels=0.00;FS=7.396;HaplotypeScore=21.0956;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.336;QD=19.21;ReadPosRankSum=2.380;SB=-3.198e+03 GT:AD:DP:GQ:PL 1/1:2,317:322:99:6186,743,0 chrI 112808 . C T 5488.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=23.9036;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.52;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5488,624,0 chrI 113207 . T C 5143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=251;Dels=0.00;FS=6.073;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=-2.980;QD=20.49;ReadPosRankSum=2.956;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:3,248:251:99:5143,626,0 chrI 113326 . C G 3861.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=4.9864;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;QD=14.68;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:3861,453,0 chrI 113665 . A G 4710.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.3330;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.39;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4710,581,0 chrI 113688 . G A 5521.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=12.6573;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.00;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5521,633,0 chrI 113789 . G A 6714.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=20.7002;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-3.393e+03 GT:AD:DP:GQ:PL 1/1:0,307:307:99:6714,768,0 chrI 113857 . G C 8521.01 filter AC=2;AF=1.00;AN=2;DP=401;Dels=0.00;FS=0.000;HaplotypeScore=23.5803;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.25;SB=-3.587e+03 GT:AD:DP:GQ:PL 1/1:0,398:401:99:8521,1022,0 chrI 113890 . T C 7182.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=367;Dels=0.00;FS=2.918;HaplotypeScore=10.5999;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-0.531;QD=19.57;ReadPosRankSum=2.349;SB=-3.545e+03 GT:AD:DP:GQ:PL 1/1:2,365:367:99:7182,886,0 chrI 113907 . C T 6350.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=19.30;SB=-3.659e+03 GT:AD:DP:GQ:PL 1/1:0,327:329:99:6350,744,0 chrI 114102 . C T 6015.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=28.9117;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=18.80;SB=-3.337e+03 GT:AD:DP:GQ:PL 1/1:0,320:320:99:6015,699,0 chrI 114133 . T C 4648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=272;Dels=0.00;FS=5.998;HaplotypeScore=5.8106;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-1.151;QD=17.09;ReadPosRankSum=2.967;SB=-3.006e+03 GT:AD:DP:GQ:PL 1/1:3,269:272:99:4648,563,0 chrI 114148 . T G 4783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=12.0487;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.949;QD=16.32;ReadPosRankSum=1.720;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:1,291:293:99:4783,575,0 chrI 114227 . T C 7485.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.003;DP=403;Dels=0.00;FS=13.721;HaplotypeScore=42.1536;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.355;QD=18.57;ReadPosRankSum=4.179;SB=-4.142e+03 GT:AD:DP:GQ:PL 1/1:6,397:403:99:7485,908,0 chrI 114589 . A G 4873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=294;Dels=0.00;FS=2.560;HaplotypeScore=17.0300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.109;QD=16.57;ReadPosRankSum=2.976;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:3,291:294:99:4873,587,0 chrI 114652 . C T 5280.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=17.4379;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=18.40;SB=-2.984e+03 GT:AD:DP:GQ:PL 1/1:0,284:287:99:5280,600,0 chrI 114824 . C T 5579.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=10.5612;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.32;SB=-2.837e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5579,639,0 chrI 114884 . A G 4152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=215;Dels=0.00;FS=3.014;HaplotypeScore=11.9517;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.506;QD=19.31;ReadPosRankSum=2.403;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:2,209:215:99:4152,500,0 chrI 114928 . T C 4915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=1.349;QD=21.65;ReadPosRankSum=1.717;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:4915,587,0 chrI 115062 . G A 3419.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=18.5570;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=18.19;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3419,393,0 chrI 115167 . C T 3988.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.14;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:3988,462,0 chrI 115182 . T C 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=197;Dels=0.00;FS=7.330;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=0.293;QD=17.96;ReadPosRankSum=2.387;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:3538,425,0 chrI 115494 . T C 6001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=295;Dels=0.00;FS=2.553;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-0.437;QD=20.34;ReadPosRankSum=2.956;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:3,291:295:99:6001,719,0 chrI 115512 . G C 5266.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=11.1608;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=19.58;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5266,626,0 chrI 115606 . T C 5724.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.12;SB=-2.875e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:5724,683,0 chrI 115785 . C T 4659.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.57;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4659,534,0 chrI 115977 . G A 4899.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.14;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:4899,579,0 chrI 115998 . T C 5271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=274;Dels=0.00;FS=2.840;HaplotypeScore=14.2832;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=0.616;QD=19.24;ReadPosRankSum=2.414;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:2,271:274:99:5271,635,0 chrI 116037 . A G 5835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=270;Dels=0.00;FS=3.939;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=0.937;QD=21.61;ReadPosRankSum=1.719;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:1,269:270:99:5835,692,0 chrI 116074 . A G 7006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=325;Dels=0.00;FS=6.620;HaplotypeScore=16.6394;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-0.247;QD=21.56;ReadPosRankSum=2.427;SB=-3.628e+03 GT:AD:DP:GQ:PL 1/1:2,321:325:99:7006,830,0 chrI 116327 . T C 5603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=0.452;QD=17.29;ReadPosRankSum=1.689;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:1,321:324:99:5603,674,0 chrI 116334 . C T 5042.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=5.1541;MLEAC=2;MLEAF=1.00;MQ=49.95;MQ0=0;QD=16.32;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,307:309:99:5042,602,0 chrI 116340 . T C 4838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=315;Dels=0.00;FS=5.385;HaplotypeScore=11.3717;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=0.345;QD=15.36;ReadPosRankSum=2.927;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:3,311:315:99:4838,587,0 chrI 116511 . C T 5818.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=19.8442;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.72;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:0,291:295:99:5818,675,0 chrI 116526 . T C 5424.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=19.80;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:5424,656,0 chrI 116548 . A G 5041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.180;DP=273;Dels=0.00;FS=10.018;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=-1.876;QD=18.47;ReadPosRankSum=4.107;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:6,266:273:99:5041,599,0 chrI 116600 . G A 4658.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=12.6347;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=20.61;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4658,528,0 chrI 117103 . T C 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=163;Dels=0.00;FS=3.035;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.313;QD=20.35;ReadPosRankSum=2.388;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:2,158:163:99:3317,390,0 chrI 117504 . A C 2539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=3.270;HaplotypeScore=6.4682;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.577;QD=18.14;ReadPosRankSum=1.682;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2572,312,0 chrI 117510 . C T 2618 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.70;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2651,312,0 chrI 117669 . C T 2401 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=18.91;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2434,276,0 chrI 117678 . G A 2100 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=18.42;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2133,252,0 chrI 117940 . C T 2994 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.68;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3027,348,0 chrI 118143 . T C 1970 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.10;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2003,240,0 chrI 118765 . G A 2624 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.7907;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.02;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2657,306,0 chrI 118822 . T C 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.079;QD=21.43;ReadPosRankSum=1.706;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2862,345,0 chrI 118997 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.64;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2955,351,0 chrI 119050 . C T 3636.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.04;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3636,417,0 chrI 119167 . C G 3929.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.2728;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.59;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3929,473,0 chrI 119242 . C T 3746.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.57;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3746,435,0 chrI 119745 . G C 1925 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1958,228,0 chrI 120378 . G A 3620.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.05;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3620,411,0 chrI 120473 . T C 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.8603;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.607;QD=20.00;ReadPosRankSum=1.431;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:2853,317,0 chrI 120818 . C T 2668 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.01;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2701,318,0 chrI 121421 . A G 2429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=3.378;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.609;QD=21.88;ReadPosRankSum=1.638;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2462,305,0 chrI 121453 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.0573;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.09;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3082,351,0 chrI 121907 . G A 3542.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.47;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3542,405,0 chrI 121957 . C T 3804.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.99;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3804,435,0 chrI 121976 . A G 4015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=190;Dels=0.00;FS=3.968;HaplotypeScore=8.2169;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=1.287;QD=21.13;ReadPosRankSum=1.677;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,186:190:99:4015,479,0 chrI 122045 . T C 4462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=209;Dels=0.00;FS=2.995;HaplotypeScore=13.9083;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.251;QD=21.35;ReadPosRankSum=2.403;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4462,539,0 chrI 122147 . C T 4843.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.11;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4843,558,0 chrI 122202 . T A 4654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=207;Dels=0.00;FS=6.705;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.198;QD=22.48;ReadPosRankSum=2.402;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4654,528,0 chrI 123008 . G C 2892 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.74;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2925,348,0 chrI 123047 . T A 2425 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=17.57;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2458,288,0 chrI 123059 . C T 2377 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=1.9532;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.61;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2410,276,0 chrI 123074 . A G 1993 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=15.69;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2026,243,0 chrI 123594 . A T 3901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.059;QD=22.29;ReadPosRankSum=1.712;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3901,444,0 chrI 123842 . A G 3641.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3641,437,0 chrI 123953 . T C 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=118;Dels=0.00;FS=6.685;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.965;QD=20.03;ReadPosRankSum=2.365;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:2,114:118:99:2396,288,0 chrI 124001 . A G 2640 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.5864;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2673,326,0 chrI 124296 . A G 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.0819;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.726;QD=19.00;ReadPosRankSum=2.295;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2446,297,0 chrI 124373 . T C 1696 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=19.95;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1729,207,0 chrI 124375 . T A 1708 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.86;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1741,201,0 chrI 124452 . C T 1715 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=18.64;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1748,198,0 chrI 124462 . T A 1678 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=18.64;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1711,195,0 chrI 124567 . T G 2998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.216;QD=22.89;ReadPosRankSum=2.412;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3031,360,0 chrI 124593 . C T 3455.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.88;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3455,399,0 chrI 124655 . A C 2732 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=19.51;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2765,338,0 chrI 124657 . A G 2746 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=19.61;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2779,338,0 chrI 124671 . A G 2834 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=19.02;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2867,342,0 chrI 124719 . A C 4517.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.8326;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.36;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4517,539,0 chrI 124775 . G A 5991.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=21.8358;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.78;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:5991,690,0 chrI 125045 . A G 5098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=260;Dels=0.00;FS=6.048;HaplotypeScore=13.7812;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.465;QD=19.61;ReadPosRankSum=2.910;SB=-2.965e+03 GT:AD:DP:GQ:PL 1/1:3,254:260:99:5098,608,0 chrI 125133 . A G 4838.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.13;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4838,587,0 chrI 125151 . G A 4359.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.37;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4359,507,0 chrI 125460 . C T 2002 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.53;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2035,231,0 chrI 125610 . G A 2293 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.94;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2326,264,0 chrI 125616 . C T 2209 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=18.26;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2242,261,0 chrI 125619 . T C 2189 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=120;Dels=0.00;FS=5.772;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;MQRankSum=-0.387;QD=18.24;ReadPosRankSum=2.942;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2222,261,0 chrI 125793 . A T 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=3.493;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.117;QD=20.73;ReadPosRankSum=1.641;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3184,366,0 chrI 126258 . G A 3108 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.45;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3141,354,0 chrI 126462 . A G 3084 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=19.52;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3117,372,0 chrI 126468 . A G 2921 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=18.26;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2954,351,0 chrI 126483 . G A 2569 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=16.26;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:2602,297,0 chrI 126501 . T C 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=174;Dels=0.00;FS=2.603;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=-0.911;QD=15.32;ReadPosRankSum=2.393;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:2698,329,0 chrI 126600 . G A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.26;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3529,402,0 chrI 126880 . C T 409 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.02;FS=0.000;HaplotypeScore=22.0434;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;QD=3.25;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:54:442,54,0 chrI 126897 . C T 477 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=6.53;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:60:510,60,0 chrI 126902 . C G 656 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=9.65;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:84:689,84,0 chrI 127023 . G A 2142 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2175,246,0 chrI 127227 . A G 4240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=188;Dels=0.00;FS=4.523;HaplotypeScore=14.9885;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.047;QD=22.55;ReadPosRankSum=1.677;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4240,506,0 chrI 127274 . C G 3875.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.02;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:3875,461,0 chrI 127572 . G A 5309.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.50;SB=-3.157e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5309,626,0 chrI 127587 . A G 5036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=261;Dels=0.00;FS=6.206;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=-0.437;QD=19.30;ReadPosRankSum=2.421;SB=-3.168e+03 GT:AD:DP:GQ:PL 1/1:2,259:261:99:5036,602,0 chrI 127602 . G A 4677.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=18.56;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:4677,546,0 chrI 127833 . C G 4032.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=22.5823;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.36;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4032,482,0 chrI 127881 . C T 3927.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.6663;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.82;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3927,450,0 chrI 127902 . T C 3124 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.2437;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.17;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3157,378,0 chrI 128001 . C T 2490 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.45;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2523,288,0 chrI 128423 . G A 3461.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=19.44;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3461,405,0 chrI 128435 . G A 3809.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=18.58;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:3809,438,0 chrI 128455 . G T 4176.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=17.26;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:4176,477,0 chrI 128589 . T A 5217.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.760;QD=22.58;ReadPosRankSum=1.717;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5217,612,0 chrI 128662 . C T 6262.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.39;SB=-3.456e+03 GT:AD:DP:GQ:PL 1/1:0,323:323:99:6262,723,0 chrI 128756 . T G 5744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=290;Dels=0.00;FS=3.163;HaplotypeScore=19.0063;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.672;QD=19.81;ReadPosRankSum=1.720;SB=-3.255e+03 GT:AD:DP:GQ:PL 1/1:1,289:290:99:5744,686,0 chrI 128843 . T C 6215.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=14.5415;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.48;SB=-3.832e+03 GT:AD:DP:GQ:PL 1/1:0,318:319:99:6215,734,0 chrI 129067 . T G 3911.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.1993;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=18.36;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:3911,473,0 chrI 129075 . T C 4131.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.39;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4131,494,0 chrI 129476 . A G 7057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=343;Dels=0.00;FS=6.055;HaplotypeScore=23.7731;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.199;QD=20.57;ReadPosRankSum=2.962;SB=-4.013e+03 GT:AD:DP:GQ:PL 1/1:3,339:343:99:7057,848,0 chrI 129517 . T C 5431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=281;Dels=0.00;FS=6.067;HaplotypeScore=17.6146;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.546;QD=19.33;ReadPosRankSum=2.397;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:2,279:281:99:5431,665,0 chrI 129629 . T C 7296.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.391;DP=370;Dels=0.00;FS=8.014;HaplotypeScore=13.7691;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.116;QD=19.72;ReadPosRankSum=3.381;SB=-3.371e+03 GT:AD:DP:GQ:PL 1/1:4,364:370:99:7296,881,0 chrI 129656 . C T 7393.01 filter AC=2;AF=1.00;AN=2;DP=379;Dels=0.00;FS=0.000;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=19.51;SB=-3.988e+03 GT:AD:DP:GQ:PL 1/1:0,376:379:99:7393,869,0 chrI 129950 . C T 6989.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=26.1677;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=20.38;SB=-3.975e+03 GT:AD:DP:GQ:PL 1/1:0,343:343:99:6989,801,0 chrI 130254 . T C 3521.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.78;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3521,425,0 chrI 130337 . C A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.05;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3529,417,0 chrI 130479 . G T 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.2769;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=18.98;ReadPosRankSum=1.644;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,118:122:99:2348,270,0 chrI 130691 . G T 3006 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3039,357,0 chrI 131635 . T C 6338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=25.9660;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.891;QD=19.93;ReadPosRankSum=1.688;SB=-3.227e+03 GT:AD:DP:GQ:PL 1/1:1,316:318:99:6338,764,0 chrI 132552 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.2129;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.75;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3632,431,0 chrI 132928 . C T 3449.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.1593;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.29;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3449,393,0 chrI 132978 . A G 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-0.185;QD=19.89;ReadPosRankSum=0.642;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2300,270,0 chrI 132994 . C T 2644 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.15;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2677,306,0 chrI 133080 . A G 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=136;Dels=0.00;FS=6.185;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=-2.138;QD=18.58;ReadPosRankSum=2.395;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:2,132:136:99:2560,303,0 chrI 133083 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.82;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2689,312,0 chrI 133134 . C T 2703 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=18.90;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2736,315,0 chrI 133373 . C T 4441.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.3574;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.88;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4441,519,0 chrI 133640 . A G 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-0.157;QD=20.92;ReadPosRankSum=1.706;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2816,339,0 chrI 134190 . G A 2919 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.45;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2952,348,0 chrI 134256 . T G 2122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=106;Dels=0.00;FS=2.995;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.778;QD=20.02;ReadPosRankSum=2.357;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2155,258,0 chrI 134328 . C A 2730 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.6902;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.38;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2763,324,0 chrI 134414 . A G 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=159;Dels=0.00;FS=6.387;HaplotypeScore=12.8091;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-1.143;QD=21.82;ReadPosRankSum=2.418;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3469,414,0 chrI 134475 . T C 2970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=2.802;HaplotypeScore=9.0112;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.794;QD=20.62;ReadPosRankSum=2.347;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3003,360,0 chrI 134486 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.59;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3336,387,0 chrI 134531 . A G 3041 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6597;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=19.88;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3074,366,0 chrI 134587 . G A 3060 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.25;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3093,360,0 chrI 134604 . A G 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=149;Dels=0.00;FS=3.020;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-2.217;QD=20.14;ReadPosRankSum=2.367;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3034,365,0 chrI 134662 . G A 2708 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=18.42;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2741,312,0 chrI 135325 . G C 3051 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.34;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3084,374,0 chrI 136910 . T C 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.261;DP=142;Dels=0.00;FS=5.165;HaplotypeScore=7.1647;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.610;QD=21.56;ReadPosRankSum=3.360;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:4,138:142:99:3094,369,0 chrI 136958 . G A 3016 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.2116;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=18.17;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3049,357,0 chrI 136969 . A T 3793.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.55;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3793,438,0 chrI 137063 . C T 4039.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.1905;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.15;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4039,477,0 chrI 137336 . A G 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.1647;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.073;QD=19.75;ReadPosRankSum=1.690;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3279,393,0 chrI 138335 . G C 3588.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.8469;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=18.98;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,184:189:99:3588,431,0 chrI 138353 . C T 3803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=3.346;HaplotypeScore=4.3092;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-0.829;QD=20.23;ReadPosRankSum=1.585;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3803,438,0 chrI 138499 . G A 2413 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=20.80;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2446,282,0 chrI 138650 . A G 1120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=1.392;QD=18.36;ReadPosRankSum=1.675;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1153,141,0 chrI 139272 . C T 1488 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=17.93;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1521,171,0 chrI 139277 . T C 1468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=89;Dels=0.00;FS=5.692;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=-1.382;QD=16.49;ReadPosRankSum=1.654;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1501,180,0 chrI 139610 . C G 3306.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.3545;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=20.53;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3306,398,0 chrI 140346 . T A 2043 filter AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=20.92;MQ0=93;QD=9.00;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,227:227:99:2076,240,0 chrI 140397 . T C 2422 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=187;Dels=0.00;FS=13.460;HaplotypeScore=8.0243;MLEAC=2;MLEAF=1.00;MQ=24.81;MQ0=57;MQRankSum=2.071;QD=12.95;ReadPosRankSum=2.336;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:3,184:187:99:2455,294,0 chrI 140418 . G A 3584.01 filter AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=25.51;MQ0=33;QD=16.83;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:3584,420,0 chrI 140526 . C T 2691 filter AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=16.52;MQ0=118;QD=10.98;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,244:245:99:2724,321,0 chrI 141030 . T A 2644 filter AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.2654;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=1;QD=23.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2677,309,0 chrI 141135 . A T 4980.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.0975;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=3;QD=21.75;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4980,567,0 chrI 141984 . T C 2124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=106;Dels=0.00;FS=2.995;HaplotypeScore=9.5386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.894;QD=20.04;ReadPosRankSum=2.403;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2157,258,0 chrI 142800 . C T 3361.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.5341;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=15.07;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:3361,393,0 chrI 143582 . A G 3656.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3656,437,0 chrI 143806 . T C 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=171;Dels=0.00;FS=3.031;HaplotypeScore=11.9191;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.004;QD=20.95;ReadPosRankSum=2.363;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3583,428,0 chrI 143852 . T C 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=190;Dels=0.00;FS=5.843;HaplotypeScore=16.8472;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.203;QD=19.85;ReadPosRankSum=2.877;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:3,185:190:99:3772,461,0 chrI 144826 . C G 2160 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.00;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2193,264,0 chrI 145634 . T C 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.617;QD=20.68;ReadPosRankSum=1.703;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2535,306,0 chrI 147414 . T C 1410 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.32;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1443,171,0 chrI 147507 . G T 1320 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.62;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1353,159,0 chrI 147598 . G A 1698 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.87;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1731,204,0 chrI 147607 . T A 1946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=103;Dels=0.00;FS=5.820;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-1.172;QD=18.89;ReadPosRankSum=2.869;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:3,100:103:99:1979,228,0 chrI 147655 . G C 2331 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.92;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2364,285,0 chrI 147717 . T A 2542 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.90;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2575,294,0 chrI 147726 . A G 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=5.402;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-1.014;QD=21.41;ReadPosRankSum=1.670;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2409,288,0 chrI 147759 . T A 2286 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.78;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2319,267,0 chrI 148146 . A T 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=127;Dels=0.01;FS=3.487;HaplotypeScore=12.3974;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.067;QD=21.80;ReadPosRankSum=1.704;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2801,321,0 chrI 148886 . C T 4042.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.97;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4042,471,0 chrI 149268 . T C 2471 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2504,305,0 chrI 149307 . T C 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=152;Dels=0.00;FS=6.071;HaplotypeScore=9.7113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.801;QD=19.76;ReadPosRankSum=2.954;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3036,365,0 chrI 149454 . G A 2530 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.92;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2563,297,0 chrI 149594 . T C 3374.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.8976;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.35;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3374,399,0 chrI 149773 . C T 2338 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.87;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2371,273,0 chrI 149913 . C A 2773 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.18;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2806,327,0 chrI 149973 . A G 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=108;Dels=0.00;FS=4.021;HaplotypeScore=7.5323;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.980;QD=20.44;ReadPosRankSum=1.699;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,105:108:99:2241,270,0 chrI 150303 . G A 2321 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=20.18;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2354,273,0 chrI 150462 . C T 2744 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.4263;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.95;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2777,315,0 chrI 150921 . G A 3441.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.01;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3441,399,0 chrI 151010 . C T 3648.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.3238;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.98;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3648,423,0 chrI 151307 . T G 2300 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.7200;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=19.01;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,116:121:99:2333,282,0 chrI 151332 . A C 1525 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=19.06;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1558,195,0 chrI 151333 . A G 1470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=-1.299;QD=18.37;ReadPosRankSum=1.689;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1503,174,0 chrI 151526 . A T 154.06 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=22.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:21:187,21,0 chrI 151772 . G A 1457 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.42;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1490,174,0 chrI 152028 . C G 2113 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2146,252,0 chrI 152155 . A G 1186 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.13;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1219,144,0 chrI 152233 . A G 2465 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2498,308,0 chrI 152336 . A G 2880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=3.270;HaplotypeScore=10.8983;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=1.581;QD=20.57;ReadPosRankSum=0.427;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2913,353,0 chrI 152728 . G A 2696 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2729,315,0 chrI 152932 . A G 4112.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.2122;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.10;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4112,488,0 chrI 153182 . A G 4854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=238;Dels=0.00;FS=3.027;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.818;QD=20.39;ReadPosRankSum=2.377;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:2,235:238:99:4854,581,0 chrI 156314 . T C 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=181;Dels=0.00;FS=7.295;HaplotypeScore=10.5579;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.867;QD=21.04;ReadPosRankSum=2.395;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3808,455,0 chrI 156651 . A G 4014.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.5386;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.97;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4014,485,0 chrI 156949 . T C 3997.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.71;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3997,485,0 chrI 157114 . A G 3139 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5217;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.02;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3172,383,0 chrI 157134 . G A 3143 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=18.71;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3176,360,0 chrI 157339 . C T 2238 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.72;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2271,258,0 chrI 157428 . G A 3005 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.6684;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3038,351,0 chrI 158597 . C T 3799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.248;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.3667;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.242;QD=21.11;ReadPosRankSum=1.655;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3799,416,0 chrI 158641 . C T 3953.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.9524;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.25;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3953,459,0 chrI 158686 . T C 4275.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=15.1835;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.38;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4275,509,0 chrI 158870 . T C 4031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=187;Dels=0.00;FS=6.377;HaplotypeScore=11.5374;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.204;QD=21.56;ReadPosRankSum=2.423;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4031,479,0 chrI 159349 . A C 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.516;QD=18.45;ReadPosRankSum=0.227;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3151,378,0 chrI 160020 . A G 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.137;DP=127;Dels=0.00;FS=9.406;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;MQRankSum=-0.185;QD=20.83;ReadPosRankSum=2.333;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2679,318,0 chrI 160197 . G A 2772 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=43.74;MQ0=0;QD=19.25;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2805,327,0 chrI 160234 . G A 1415 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.078;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=12.8779;MLEAC=2;MLEAF=1.00;MQ=33.34;MQ0=2;MQRankSum=2.754;QD=17.69;ReadPosRankSum=0.831;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:5,75:80:99:1448,154,0 chrI 160239 . G T 32.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;DP=12;Dels=0.00;FS=8.451;HaplotypeScore=2.5606;MLEAC=1;MLEAF=0.500;MQ=35.73;MQ0=2;MQRankSum=1.495;QD=2.67;ReadPosRankSum=-0.922;SB=-1.750e+01 GT:AD:DP:GQ:PL 0/1:4,6:12:30:62,0,30 chrI 160241 . G T 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;DP=8;Dels=0.00;FS=10.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=19.84;MQ0=2;MQRankSum=0.988;QD=2.51;ReadPosRankSum=-1.537;SB=-2.044e+00 GT:AD:DP:GQ:PL 0/1:5,3:8:30:50,0,30 chrI 166091 . A T 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=4;QD=0.75;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:4,21:25:6:50,6,0 chrI 166095 . C T 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.35;MQ0=4;QD=0.68;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:4,25:29:6:51,6,0 chrI 166097 . G A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.35;MQ0=4;QD=0.68;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:4,25:29:6:51,6,0 chrI 166116 . T C 90.26 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=2.26;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:15:123,15,0 chrI 166118 . A G 95.26 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=2.38;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:15:128,15,0 chrI 166120 . G T 92.26 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=2.31;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:15:125,15,0 chrI 166122 . A T 100.26 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=2.51;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:15:133,15,0 chrI 166128 . T A 95.26 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=2.38;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:15:128,15,0 chrI 166130 . G A 99.26 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=2.48;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:15:132,15,0 chrI 166133 . A G 94.26 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=2.36;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:15:127,15,0 chrI 166134 . G A 100.26 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=2.51;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:15:133,15,0 chrI 166136 . A C 99.26 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=2.48;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:15:132,15,0 chrI 166139 . T A 101.26 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=2.53;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:15:134,15,0 chrI 166245 . A T 3856.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=207;Dels=0.00;FS=15.030;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=43.79;MQ0=0;MQRankSum=0.044;QD=18.63;ReadPosRankSum=2.879;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:3856,450,0 chrI 166249 . C T 3954.01 SnpCluster AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.09;MQ0=0;QD=19.01;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3954,462,0 chrI 166251 . A G 3933.01 SnpCluster AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=18.21;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,211:216:99:3933,473,0 chrI 166369 . T C 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;MQRankSum=-0.703;QD=21.19;ReadPosRankSum=1.712;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3709,443,0 chrI 166429 . A G 4691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=0.837;QD=19.88;ReadPosRankSum=1.688;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:4691,560,0 chrI 166443 . G C 4251.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=18.98;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4251,509,0 chrI 166458 . C T 4113.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.7031;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=18.95;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4113,468,0 chrI 166571 . G A 3199 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=16.6348;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.99;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3232,375,0 chrI 166733 . A G 2868 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.92;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2901,345,0 chrI 166743 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.11;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3110,363,0 chrI 166820 . C T 3913.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3913,459,0 chrI 166862 . A G 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=188;Dels=0.00;FS=7.694;HaplotypeScore=10.8361;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.548;QD=20.98;ReadPosRankSum=2.384;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:2,184:188:99:3945,473,0 chrI 166931 . A G 4345.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.4941;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.79;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4345,518,0 chrI 167064 . C T 3951.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.47;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3951,459,0 chrI 167179 . T C 4269.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=17.0895;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4269,524,0 chrI 168032 . T C 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=147;Dels=0.00;FS=3.478;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.025;QD=19.06;ReadPosRankSum=1.709;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2835,339,0 chrI 168203 . A T 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=165;Dels=0.00;FS=7.946;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.817;QD=21.43;ReadPosRankSum=2.345;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3536,408,0 chrI 168455 . A G 3818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=192;Dels=0.00;FS=6.135;HaplotypeScore=16.6829;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.480;QD=19.89;ReadPosRankSum=2.424;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:3818,455,0 chrI 168772 . G A 6281.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=19.8442;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.59;SB=-3.164e+03 GT:AD:DP:GQ:PL 1/1:0,277:278:99:6281,714,0 chrI 171389 . A G 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.620;QD=19.22;ReadPosRankSum=1.648;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2436,291,0 chrI 171975 . A G 1742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=0.143;QD=17.96;ReadPosRankSum=2.398;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:2,93:97:99:1775,216,0 chrI 172022 . A G 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.591;DP=101;Dels=0.00;FS=12.749;HaplotypeScore=12.2639;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=2.231;QD=17.97;ReadPosRankSum=2.074;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:5,96:101:99:1848,219,0 chrI 172113 . C A 2332 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.79;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2365,270,0 chrI 172129 . A T 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.336;HaplotypeScore=3.6710;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.446;QD=21.03;ReadPosRankSum=1.696;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2073,243,0 chrI 172431 . A T 2979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.073;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.559;QD=21.28;ReadPosRankSum=1.707;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3012,345,0 chrI 172456 . A G 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.704;QD=19.97;ReadPosRankSum=1.704;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2509,297,0 chrI 172585 . A T 3211.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=150;Dels=0.00;FS=3.069;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.732;QD=21.41;ReadPosRankSum=1.709;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3245,378,0 chrI 172964 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.97;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:2782,333,0 chrI 173222 . A C 4288.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.10;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4288,518,0 chrI 173302 . G A 3992.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.3742;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.90;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3992,459,0 chrI 173405 . C T 2890 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.57;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2923,333,0 chrI 173441 . C T 2714 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=20.88;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2747,312,0 chrI 173447 . G A 2693 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=19.80;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2726,324,0 chrI 173462 . C T 2687 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=19.33;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2720,315,0 chrI 173498 . T G 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=147;Dels=0.00;FS=2.816;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=1.271;QD=18.03;ReadPosRankSum=2.113;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:2683,318,0 chrI 173528 . G A 2769 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.23;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2802,321,0 chrI 173642 . C A 2445 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.74;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2478,282,0 chrI 174118 . G A 4228.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.2479;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.02;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4228,480,0 chrI 174371 . T C 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=138;Dels=0.00;FS=3.140;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.452;QD=20.59;ReadPosRankSum=1.681;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:2874,339,0 chrI 174701 . C T 3733.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.6237;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.21;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3733,429,0 chrI 175307 . T A 5469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.970;QD=21.88;ReadPosRankSum=1.704;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:1,249:250:99:5469,618,0 chrI 175318 . C G 4845.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.27;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,236:239:99:4845,570,0 chrI 175457 . A T 5263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=248;Dels=0.00;FS=2.636;HaplotypeScore=14.4175;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.418;QD=21.22;ReadPosRankSum=2.429;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:2,246:248:99:5263,606,0 chrI 175849 . T C 2122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=123;Dels=0.00;FS=2.716;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-1.966;QD=17.25;ReadPosRankSum=2.389;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:2,120:123:99:2155,258,0 chrI 175876 . C T 2178 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.27;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2211,249,0 chrI 175963 . A G 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=3.249;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.650;QD=21.79;ReadPosRankSum=1.639;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2495,297,0 chrI 176001 . T C 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=4.037;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.425;QD=21.92;ReadPosRankSum=1.611;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2532,303,0 chrI 176015 . T C 2057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=1.172;QD=20.37;ReadPosRankSum=1.697;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,98:101:99:2090,249,0 chrI 176220 . T C 1932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=94;Dels=0.00;FS=3.033;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-1.496;QD=20.55;ReadPosRankSum=2.370;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:2,91:94:99:1965,237,0 chrI 176266 . A T 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=82;Dels=0.00;FS=2.898;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.767;QD=18.93;ReadPosRankSum=2.270;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1585,180,0 chrI 176363 . G A 1062 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.09;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1095,126,0 chrI 176368 . C T 954 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=20.30;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,46:47:99:987,117,0 chrI 176694 . A G 2001 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=1;QD=22.74;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2034,249,0 chrI 176948 . A G 4368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=4.553;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=1;MQRankSum=-0.339;QD=22.40;ReadPosRankSum=1.714;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4368,518,0 chrI 177272 . A G 3362.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=18.47;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3362,404,0 chrI 178192 . A C 3351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.039;DP=163;Dels=0.00;FS=3.291;HaplotypeScore=12.0081;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.689;QD=20.56;ReadPosRankSum=1.710;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:3351,382,0 chrI 178602 . G C 3687.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.48;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3687,432,0 chrI 178654 . G A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.68;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3561,402,0 chrI 178674 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=18.46;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:2913,342,0 chrI 178682 . C T 2952 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=17.89;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2985,351,0 chrI 178822 . T G 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=3.850;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-1.207;QD=21.27;ReadPosRankSum=1.669;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3510,420,0 chrI 178989 . A G 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.815;QD=20.69;ReadPosRankSum=1.707;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2868,336,0 chrI 179051 . A G 2094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.742;QD=18.37;ReadPosRankSum=1.485;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2127,255,0 chrI 179052 . A G 2071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-1.119;QD=18.33;ReadPosRankSum=1.671;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2104,249,0 chrI 179149 . G C 1845 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=102.6691;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=15.77;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,108:117:99:1878,231,0 chrI 179221 . A G 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=99;Dels=0.01;FS=3.018;HaplotypeScore=34.5119;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.317;QD=13.77;ReadPosRankSum=2.399;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:2,95:98:99:1396,174,0 chrI 179706 . C G 2953 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=164;Dels=0.00;FS=2.856;HaplotypeScore=7.4845;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;MQRankSum=0.172;QD=18.01;ReadPosRankSum=1.191;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:2986,357,0 chrI 179708 . A C 2775 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.083;DP=159;Dels=0.01;FS=15.358;HaplotypeScore=12.6594;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;MQRankSum=0.147;QD=17.45;ReadPosRankSum=2.814;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:3,154:158:99:2808,341,0 chrI 179709 . T C 2763 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=5.4760;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;MQRankSum=0.503;QD=17.60;ReadPosRankSum=1.710;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:2796,338,0 chrI 179761 . A C 3016 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=15.31;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:3049,368,0 chrI 179772 . T C 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=211;Dels=0.00;FS=2.979;HaplotypeScore=5.2495;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;MQRankSum=-1.007;QD=14.92;ReadPosRankSum=2.356;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:3182,378,0 chrI 179796 . A C 3937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=220;Dels=0.00;FS=6.201;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.642;QD=17.90;ReadPosRankSum=2.405;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:3937,476,0 chrI 179942 . C T 4164.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.8445;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=21.03;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4164,477,0 chrI 179996 . A G 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.329;DP=201;Dels=0.00;FS=5.223;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=0.798;QD=18.74;ReadPosRankSum=3.268;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:4,196:201:99:3766,452,0 chrI 180105 . A C 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=139;Dels=0.00;FS=2.794;HaplotypeScore=14.3654;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.458;QD=20.35;ReadPosRankSum=2.378;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:2,135:139:99:2862,344,0 chrI 180139 . A G 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.121;QD=21.32;ReadPosRankSum=1.707;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2932,353,0 chrI 180266 . G A 1796 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.1116;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=18.14;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1829,216,0 chrI 180286 . A G 2236 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=18.33;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2269,270,0 chrI 180328 . G A 2981 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.14;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3014,348,0 chrI 180356 . T C 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=136;Dels=0.00;FS=2.816;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.994;QD=21.75;ReadPosRankSum=2.413;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2991,354,0 chrI 180414 . T A 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=137;Dels=0.00;FS=2.699;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-0.368;QD=21.47;ReadPosRankSum=2.324;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2975,342,0 chrI 180592 . A G 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=3.336;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=-1.252;QD=20.13;ReadPosRankSum=1.711;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3341,410,0 chrI 180646 . C T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.5469;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=19.40;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3609,408,0 chrI 180652 . A C 3536.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.4547;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.22;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3536,423,0 chrI 180697 . A G 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=169;Dels=0.00;FS=2.574;HaplotypeScore=13.0368;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=0.584;QD=18.54;ReadPosRankSum=2.874;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:3,164:169:99:3166,380,0 chrI 180747 . A G 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-1.407;QD=20.83;ReadPosRankSum=1.710;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3333,396,0 chrI 180818 . C A 1511 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=32.26;MQ0=0;QD=10.95;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1544,177,0 chrI 180822 . T A 1566 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;QD=10.80;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:1599,189,0 chrI 180830 . A C 233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.173;DP=142;Dels=0.00;FS=2.418;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=29.99;MQ0=0;MQRankSum=2.836;QD=1.64;ReadPosRankSum=-5.861;SB=-8.001e+00 GT:AD:DP:GQ:PL 1/1:128,14:142:33:266,33,0 chrI 180835 . T C 1182 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.044;DP=140;Dels=0.00;FS=2.969;HaplotypeScore=2.7888;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;MQRankSum=1.537;QD=8.44;ReadPosRankSum=1.308;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:1215,147,0 chrI 180842 . A G 1264 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.8032;MLEAC=2;MLEAF=1.00;MQ=29.07;MQ0=0;QD=9.09;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:1297,156,0 chrI 180844 . A T 1322 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.8032;MLEAC=2;MLEAF=1.00;MQ=29.73;MQ0=0;QD=9.31;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1355,156,0 chrI 180906 . C T 2496 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=20.29;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2529,288,0 chrI 180934 . T A 3142 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=22.60;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3175,363,0 chrI 180953 . A G 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=133;Dels=0.00;FS=6.667;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;MQRankSum=-1.433;QD=20.72;ReadPosRankSum=2.339;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2789,336,0 chrI 180990 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;QD=19.26;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2787,321,0 chrI 180997 . A G 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=38.99;MQ0=0;MQRankSum=-0.935;QD=17.80;ReadPosRankSum=1.657;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2561,303,0 chrI 181013 . T C 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.393;DP=135;Dels=0.00;FS=14.940;HaplotypeScore=4.4970;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=0;MQRankSum=-2.433;QD=17.06;ReadPosRankSum=3.354;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:4,131:135:99:2336,284,0 chrI 181117 . G A 2334 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=18.82;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2367,276,0 chrI 181118 . T C 2359 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=19.02;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2392,288,0 chrI 181119 . G A 2411 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=18.98;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2444,291,0 chrI 181197 . G A 2734 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;QD=19.81;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,133:138:99:2767,327,0 chrI 181318 . C T 2965 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.02;FS=0.000;HaplotypeScore=32.3261;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.59;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2998,345,0 chrI 181377 . G A 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.8201;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=0.202;QD=20.89;ReadPosRankSum=-1.541;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:1,164:168:99:3510,405,0 chrI 181491 . C T 3941.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.91;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3941,456,0 chrI 181657 . C G 3755.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.2992;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.96;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3755,449,0 chrI 181746 . C T 4042.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.9244;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.09;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4042,465,0 chrI 181772 . T C 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=193;Dels=0.00;FS=4.862;HaplotypeScore=4.1335;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.481;QD=21.12;ReadPosRankSum=1.696;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4076,482,0 chrI 181864 . T C 2469 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.4183;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.24;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2502,303,0 chrI 182040 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.8084;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=19.61;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2817,327,0 chrI 182045 . A G 2790 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.5556;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=18.98;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2823,344,0 chrI 182141 . G T 3112 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8710;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.92;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3145,366,0 chrI 182201 . C T 2448 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;QD=18.83;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2481,279,0 chrI 182210 . T A 2330 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=16.52;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2363,276,0 chrI 182213 . T C 2241 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;QD=15.24;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2274,270,0 chrI 182240 . T C 1887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=3.405;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.14;MQ0=0;MQRankSum=-1.230;QD=13.67;ReadPosRankSum=1.707;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:1920,237,0 chrI 182251 . C T 2023 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;QD=14.66;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2056,237,0 chrI 182605 . A T 1631 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=1;QD=17.92;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1664,195,0 chrI 183018 . C A 1761 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=19.57;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1794,204,0 chrI 183270 . T C 2307 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=2;QD=19.22;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2340,279,0 chrI 183331 . G T 940 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=1;QD=16.79;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:973,117,0 chrI 183353 . C T 1134 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=20.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1167,132,0 chrI 183483 . C T 332.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.988;DP=75;Dels=0.00;FS=63.825;HaplotypeScore=7.2989;MLEAC=1;MLEAF=0.500;MQ=26.50;MQ0=18;MQRankSum=4.214;QD=4.43;ReadPosRankSum=3.700;SB=0.782 GT:AD:DP:GQ:PL 0/1:41,34:75:99:362,0,141 chrI 183545 . C T 402 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.91;MQ0=2;QD=5.66;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:51:435,51,0 chrI 183570 . T C 212.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;DP=53;Dels=0.00;FS=12.472;HaplotypeScore=2.6432;MLEAC=1;MLEAF=0.500;MQ=24.93;MQ0=0;MQRankSum=3.029;QD=4.00;ReadPosRankSum=-1.581;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:40,13:53:79:242,0,79 chrI 183586 . C T 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.21;MQ0=0;MQRankSum=2.096;QD=0.65;ReadPosRankSum=-2.863;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,4:40:56:56,0,226 chrI 183590 . A G 212.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=0;MQRankSum=-1.083;QD=6.66;ReadPosRankSum=1.625;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:1,31:32:9:245,9,0 chrI 183591 . C G 212.79 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.300;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=0;MQRankSum=0.325;QD=6.65;ReadPosRankSum=1.625;SB=-7.982e-01 GT:AD:DP:GQ:PL 1/1:1,31:32:10:245,10,0 chrI 183596 . C T 258 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=0;QD=8.60;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,30:30:33:291,33,0 chrI 183635 . T C 85.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464;DP=42;Dels=0.00;FS=17.226;HaplotypeScore=25.5429;MLEAC=1;MLEAF=0.500;MQ=23.28;MQ0=1;MQRankSum=0.642;QD=2.02;ReadPosRankSum=1.661;SB=-4.925e+01 GT:AD:DP:GQ:PL 0/1:33,9:42:99:115,0,229 chrI 183650 . G A 143.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;DP=65;Dels=0.00;FS=7.081;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=20.27;MQ0=1;MQRankSum=-1.487;QD=2.20;ReadPosRankSum=-3.978;SB=-6.517e-03 GT:AD:DP:GQ:PL 0/1:10,55:65:99:173,0,119 chrI 183662 . T C 145.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;DP=88;Dels=0.00;FS=18.235;HaplotypeScore=6.9745;MLEAC=1;MLEAF=0.500;MQ=17.70;MQ0=1;MQRankSum=2.917;QD=1.65;ReadPosRankSum=2.073;SB=-8.350e+01 GT:AD:DP:GQ:PL 0/1:73,15:88:99:175,0,108 chrI 183675 . C T 200.64 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.514;DP=118;Dels=0.00;FS=11.444;HaplotypeScore=11.0451;MLEAC=2;MLEAF=1.00;MQ=16.27;MQ0=1;MQRankSum=2.111;QD=1.70;ReadPosRankSum=-0.502;SB=-1.034e+02 GT:AD:DP:GQ:PL 1/1:99,19:118:11:233,11,0 chrI 183689 . T A 224.33 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.101;DP=146;Dels=0.00;FS=27.763;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=16.29;MQ0=1;MQRankSum=3.214;QD=1.54;ReadPosRankSum=-2.558;SB=-1.033e+02 GT:AD:DP:GQ:PL 1/1:126,20:146:14:257,14,0 chrI 183712 . G A 95.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.514;DP=162;Dels=0.00;FS=77.613;HaplotypeScore=4.1281;MLEAC=1;MLEAF=0.500;MQ=16.89;MQ0=5;MQRankSum=3.958;QD=0.59;ReadPosRankSum=-6.854;SB=0.325 GT:AD:DP:GQ:PL 0/1:143,19:162:90:125,0,90 chrI 183835 . A G 851 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;QD=12.89;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:884,102,0 chrI 183859 . A T 114.13 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.78;MQ0=0;QD=2.15;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:18:147,18,0 chrI 183860 . G A 72.27 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.78;MQ0=0;MQRankSum=-2.627;QD=1.36;ReadPosRankSum=-0.601;SB=-1.015e+01 GT:AD:DP:GQ:PL 0/1:4,48:52:9:102,0,9 chrI 183865 . T A 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.89;MQ0=0;QD=0.31;SB=-5.051e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:6:48,6,0 chrI 183867 . C T 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.26;MQ0=0;QD=0.31;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,52:52:6:47,6,0 chrI 183890 . A G 64.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.848;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=16.36;MQ0=0;MQRankSum=-3.156;QD=0.84;ReadPosRankSum=-1.136;SB=2.49 GT:AD:DP:GQ:PL 1/1:4,73:77:12:97,12,0 chrI 183896 . A T 39.97 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=16.36;MQ0=0;QD=0.52;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,77:77:9:72,9,0 chrI 183904 . C G 62.51 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.28;MQ0=0;QD=0.78;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,80:80:12:95,12,0 chrI 183909 . G A 76.51 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.53;MQ0=0;QD=0.97;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,79:79:12:109,12,0 chrI 183912 . G A 80.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.13;MQ0=0;MQRankSum=-2.379;QD=0.97;ReadPosRankSum=1.037;SB=2.49 GT:AD:DP:GQ:PL 1/1:3,80:83:12:113,12,0 chrI 183918 . C T 68.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.31;MQ0=0;MQRankSum=-2.401;QD=0.90;ReadPosRankSum=2.161;SB=2.49 GT:AD:DP:GQ:PL 1/1:3,73:76:12:101,12,0 chrI 183920 . C A 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.31;MQ0=0;QD=0.91;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,76:76:12:102,12,0 chrI 183923 . A G 67.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=50.5590;MLEAC=2;MLEAF=1.00;MQ=17.10;MQ0=0;MQRankSum=-1.039;QD=0.90;ReadPosRankSum=1.686;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:1,74:75:12:100,12,0 chrI 183929 . A G 66.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=45.8767;MLEAC=2;MLEAF=1.00;MQ=17.37;MQ0=0;MQRankSum=-1.814;QD=1.01;ReadPosRankSum=2.375;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:2,64:66:12:99,12,0 chrI 183952 . G A 116.13 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.73;MQ0=0;QD=1.66;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,70:70:18:149,18,0 chrI 183955 . T C 112.13 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.36;MQ0=0;QD=1.78;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,63:63:18:145,18,0 chrI 183956 . T C 117.13 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.36;MQ0=0;QD=1.86;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,63:63:18:150,18,0 chrI 183962 . A T 150.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.39;MQ0=0;QD=2.17;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,69:69:21:183,21,0 chrI 183965 . A C 114.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.07;MQ0=0;MQRankSum=0.540;QD=1.87;ReadPosRankSum=1.675;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:1,60:61:18:147,18,0 chrI 183966 . C T 115.13 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.20;MQ0=0;QD=1.92;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,60:60:18:148,18,0 chrI 183967 . G A 118.13 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.20;MQ0=0;QD=1.97;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,60:60:18:151,18,0 chrI 186116 . T A 84.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.99;MQ0=0;QD=9.36;SB=-6.430e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:117,15,0 chrI 186161 . T C 211 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.59;MQ0=0;QD=16.23;SB=-7.399e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:33:244,33,0 chrI 186193 . G A 170.01 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.16;MQ0=0;QD=8.95;SB=-2.602e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:27:203,27,0 chrI 186194 . T C 233 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.16;MQ0=0;QD=12.26;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:36:266,36,0 chrI 186203 . T C 165.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=0;QD=9.71;SB=-2.368e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:27:198,27,0 chrI 186221 . G T 200 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=13.7662;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;QD=7.14;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:30:233,30,0 chrI 186222 . G C 204 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;QD=7.29;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:30:237,30,0 chrI 186223 . G A 200 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;QD=7.14;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:30:233,30,0 chrI 186229 . C T 200 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=6.25;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,32:32:30:233,30,0 chrI 186231 . G A 200 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=6.25;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,32:32:30:233,30,0 chrI 186241 . C G 195 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.84;MQ0=0;QD=5.57;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,35:35:30:228,30,0 chrI 186244 . C T 185.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=5.14;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:27:218,27,0 chrI 186250 . T C 153.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=4.25;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:24:186,24,0 chrI 186253 . G A 166.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.74;MQ0=0;QD=4.74;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,35:35:24:199,24,0 chrI 186254 . G C 162.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.74;MQ0=0;QD=4.63;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,35:35:24:195,24,0 chrI 186262 . T C 158.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=3.68;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,43:43:24:191,24,0 chrI 186275 . A G 106.13 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=0;QD=2.36;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:18:139,18,0 chrI 186276 . C T 121.13 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=0;QD=2.69;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:18:154,18,0 chrI 186279 . C A 116.13 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=0;QD=2.52;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:18:149,18,0 chrI 186283 . G C 107.13 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;QD=2.14;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:18:140,18,0 chrI 186293 . A G 134.06 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;QD=3.19;SB=-4.307e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:21:167,21,0 chrI 186295 . G A 168.03 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;QD=4.00;SB=-4.304e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:24:201,24,0 chrI 186302 . A G 91.26 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=2.40;SB=-4.327e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:15:124,15,0 chrI 186304 . A G 88.26 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=2.32;SB=-2.227e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:15:121,15,0 chrI 186305 . C A 95.26 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=2.51;SB=-4.327e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:15:128,15,0 chrI 186326 . T C 132.06 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=2.36;SB=-8.707e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:21:165,21,0 chrI 186327 . A G 128.06 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=2.29;SB=-8.707e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:21:161,21,0 chrI 186345 . A G 311 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;QD=4.32;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:42:344,42,0 chrI 186359 . T C 353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;MQRankSum=1.070;QD=5.12;ReadPosRankSum=1.681;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:48:386,48,0 chrI 186365 . C T 441 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=6.12;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:57:474,57,0 chrI 186377 . C T 601 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;QD=7.61;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:75:634,75,0 chrI 186392 . C T 872 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.20;MQ0=0;QD=9.38;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:905,111,0 chrI 186396 . C T 885 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=0;QD=10.41;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:918,111,0 chrI 186397 . T A 839 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=0;QD=9.87;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:872,108,0 chrI 186406 . G A 1153 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.66;MQ0=0;QD=11.65;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1186,144,0 chrI 186504 . G C 2177 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.5565;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;QD=18.45;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2210,264,0 chrI 186505 . A C 2164 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.7678;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=18.34;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2197,267,0 chrI 186563 . T C 3059 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=18.77;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3092,369,0 chrI 186605 . A G 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=181;Dels=0.00;FS=12.160;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;MQRankSum=1.444;QD=21.78;ReadPosRankSum=2.927;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:3,176:181:99:3942,470,0 chrI 186807 . C A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=21.15;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3912,456,0 chrI 186857 . T C 1943 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=13.5056;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;QD=14.29;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:1976,234,0 chrI 186867 . C A 1717 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=78.0916;MLEAC=2;MLEAF=1.00;MQ=33.35;MQ0=0;QD=14.07;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1750,204,0 chrI 186877 . C T 38.97 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=88.1307;MLEAC=2;MLEAF=1.00;MQ=30.79;MQ0=0;QD=0.38;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:9:71,9,0 chrI 186907 . T C 797 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.35;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:830,99,0 chrI 186928 . T C 710 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.92;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:87:743,87,0 chrI 186963 . C A 834 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=13.90;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:867,105,0 chrI 186974 . C T 1000 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;QD=15.38;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1033,120,0 chrI 186987 . G A 1129 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=17.37;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1162,135,0 chrI 186990 . G C 1093 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=16.82;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1126,135,0 chrI 187062 . T C 972 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.84;MQ0=0;QD=19.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1005,120,0 chrI 187499 . A C 1158 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=7;QD=18.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1191,141,0 chrI 187734 . C T 3136 filter AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=7;QD=19.48;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3169,372,0 chrI 187768 . A G 3274.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=19.72;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3274,398,0 chrI 188151 . T C 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=125;Dels=0.00;FS=4.736;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;MQRankSum=-0.369;QD=19.58;ReadPosRankSum=1.704;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,121:125:99:2480,294,0 chrI 188167 . C T 2132 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.28;MQ0=0;QD=17.48;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2165,255,0 chrI 188190 . T C 2127 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.76;MQ0=0;QD=17.29;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2160,261,0 chrI 188205 . A G 2501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.00;FS=2.808;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=29.66;MQ0=0;MQRankSum=-1.776;QD=17.13;ReadPosRankSum=2.349;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2534,303,0 chrI 188441 . T G 3853.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=33.67;MQ0=0;QD=22.02;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3853,461,0 chrI 188881 . G C 4711.01 filter AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=9.7056;MLEAC=2;MLEAF=1.00;MQ=40.69;MQ0=15;QD=17.84;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,257:264:99:4711,575,0 chrI 188895 . G A 2772.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.307;DP=311;Dels=0.00;FS=12.921;HaplotypeScore=21.9595;MLEAC=1;MLEAF=0.500;MQ=43.23;MQ0=0;MQRankSum=9.973;QD=8.91;ReadPosRankSum=1.265;SB=-1.344e+03 GT:AD:DP:GQ:PL 0/1:137,174:311:99:2802,0,1924 chrI 188939 . A G 7344.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=381;Dels=0.00;FS=2.780;HaplotypeScore=19.9278;MLEAC=2;MLEAF=1.00;MQ=40.68;MQ0=0;MQRankSum=-1.355;QD=19.28;ReadPosRankSum=2.424;SB=-3.329e+03 GT:AD:DP:GQ:PL 1/1:2,379:381:99:7344,878,0 chrI 189059 . C T 391.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.284;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=24.61;MQ0=1;MQRankSum=3.417;QD=4.20;ReadPosRankSum=4.006;SB=-7.701e+01 GT:AD:DP:GQ:PL 0/1:42,51:93:71:421,0,71 chrI 189066 . T C 712 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.15;MQ0=1;QD=6.91;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,103:103:90:745,90,0 chrI 189087 . G A 269.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.938;DP=119;Dels=0.00;FS=1.651;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=36.16;MQ0=1;MQRankSum=-2.055;QD=2.26;ReadPosRankSum=-0.815;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,56:119:99:299,0,699 chrI 189219 . A G 498.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.477;DP=70;Dels=0.00;FS=4.095;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=31.75;MQ0=0;MQRankSum=-2.462;QD=7.11;ReadPosRankSum=1.769;SB=-8.801e+01 GT:AD:DP:GQ:PL 0/1:29,40:70:99:528,0,240 chrI 189245 . A G 115.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.693;DP=28;Dels=0.00;FS=4.008;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=34.60;MQ0=1;MQRankSum=-0.194;QD=4.11;ReadPosRankSum=0.361;SB=-5.574e+01 GT:AD:DP:GQ:PL 0/1:15,11:28:99:145,0,228 chrI 189392 . C T 1184.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.364;DP=149;Dels=0.00;FS=5.757;HaplotypeScore=5.5642;MLEAC=1;MLEAF=0.500;MQ=46.37;MQ0=5;MQRankSum=-8.148;QD=7.95;ReadPosRankSum=0.893;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:74,75:149:99:1214,0,1362 chrI 189482 . T A 2181 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.686;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=5;MQRankSum=1.306;QD=14.35;ReadPosRankSum=3.820;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:6,146:152:99:2214,238,0 chrI 189539 . C T 1336.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.711;DP=235;Dels=0.00;FS=4.008;HaplotypeScore=11.3486;MLEAC=1;MLEAF=0.500;MQ=47.64;MQ0=10;MQRankSum=-9.869;QD=5.69;ReadPosRankSum=2.451;SB=-2.530e+02 GT:AD:DP:GQ:PL 0/1:117,118:235:99:1366,0,1732 chrI 189568 . T C 1764.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.841;DP=225;Dels=0.00;FS=17.673;HaplotypeScore=10.6457;MLEAC=1;MLEAF=0.500;MQ=46.06;MQ0=8;MQRankSum=9.048;QD=7.84;ReadPosRankSum=0.103;SB=-9.360e+02 GT:AD:DP:GQ:PL 0/1:106,119:225:99:1794,0,1074 chrI 189587 . C T 785.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;DP=208;Dels=0.00;FS=33.129;HaplotypeScore=12.6642;MLEAC=1;MLEAF=0.500;MQ=45.28;MQ0=8;MQRankSum=-9.407;QD=3.77;ReadPosRankSum=0.296;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:121,82:207:99:815,0,1856 chrI 189641 . C T 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.102;DP=166;Dels=0.00;FS=35.385;HaplotypeScore=13.5348;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=3;MQRankSum=7.103;QD=14.36;ReadPosRankSum=0.183;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:26,138:166:99:2417,159,0 chrI 189876 . A G 3973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=191;Dels=0.00;FS=3.006;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.276;QD=20.80;ReadPosRankSum=1.871;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3973,476,0 chrI 189934 . G A 4309.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=20.72;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4309,501,0 chrI 190116 . A G 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=225;Dels=0.00;FS=3.884;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;MQRankSum=-1.101;QD=14.00;ReadPosRankSum=1.701;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:3183,389,0 chrI 190429 . G A 9966.01 filter AC=2;AF=1.00;AN=2;DP=510;Dels=0.00;FS=0.000;HaplotypeScore=39.9291;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.54;SB=-5.365e+03 GT:AD:DP:GQ:PL 1/1:0,510:510:99:9966,1160,0 chrI 190558 . T A 5712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.242;DP=349;Dels=0.00;FS=13.154;HaplotypeScore=31.0918;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.697;QD=16.37;ReadPosRankSum=3.402;SB=-3.155e+03 GT:AD:DP:GQ:PL 1/1:4,345:349:99:5712,692,0 chrI 190621 . A G 6693.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=397;Dels=0.00;FS=2.836;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.190;QD=16.86;ReadPosRankSum=2.437;SB=-3.759e+03 GT:AD:DP:GQ:PL 1/1:2,392:397:99:6693,812,0 chrI 190636 . T C 6452.01 filter AC=2;AF=1.00;AN=2;DP=391;Dels=0.00;FS=0.000;HaplotypeScore=14.3737;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=16.50;SB=-3.729e+03 GT:AD:DP:GQ:PL 1/1:0,391:391:99:6452,793,0 chrI 190951 . G A 10087.01 filter AC=2;AF=1.00;AN=2;DP=489;Dels=0.00;FS=0.000;HaplotypeScore=34.7893;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.63;SB=-3.849e+03 GT:AD:DP:GQ:PL 1/1:0,483:489:99:10087,1152,0 chrI 191015 . C T 11857.01 filter AC=2;AF=1.00;AN=2;DP=556;Dels=0.00;FS=0.000;HaplotypeScore=52.9471;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.33;SB=-4.039e+03 GT:AD:DP:GQ:PL 1/1:0,554:556:99:11857,1362,0 chrI 191617 . T C 4788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=11.7675;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=1.485;QD=15.50;ReadPosRankSum=1.698;SB=-3.323e+03 GT:AD:DP:GQ:PL 1/1:1,308:309:99:4788,572,0 chrI 191630 . G A 4606.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=13.5321;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=14.81;SB=-3.308e+03 GT:AD:DP:GQ:PL 1/1:0,311:311:99:4606,528,0 chrI 191704 . G C 5784.01 filter AC=2;AF=1.00;AN=2;DP=363;Dels=0.00;FS=0.000;HaplotypeScore=36.0756;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=15.93;SB=-3.929e+03 GT:AD:DP:GQ:PL 1/1:0,359:363:99:5784,707,0 chrI 191755 . A G 7603.01 filter AC=2;AF=1.00;AN=2;DP=395;Dels=0.00;FS=0.000;HaplotypeScore=30.1348;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.25;SB=-4.598e+03 GT:AD:DP:GQ:PL 1/1:0,390:395:99:7603,905,0 chrI 191818 . G T 7244.01 filter AC=2;AF=1.00;AN=2;DP=363;Dels=0.00;FS=0.000;HaplotypeScore=45.5125;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.96;SB=-4.083e+03 GT:AD:DP:GQ:PL 1/1:1,357:363:99:7244,834,0 chrI 192196 . A G 4273.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.34;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4273,527,0 chrI 192345 . G C 1684 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.02;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.58;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1717,207,0 chrI 193131 . C T 6952.01 PASS AC=2;AF=1.00;AN=2;DP=350;Dels=0.00;FS=0.000;HaplotypeScore=21.8132;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=19.86;SB=-3.643e+03 GT:AD:DP:GQ:PL 1/1:0,347:350:99:6952,804,0 chrI 193260 . T C 6262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=325;Dels=0.00;FS=10.545;HaplotypeScore=27.2658;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.890;QD=19.27;ReadPosRankSum=2.947;SB=-3.390e+03 GT:AD:DP:GQ:PL 1/1:3,318:325:99:6262,746,0 chrI 193348 . G T 5180.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=15.8667;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.40;SB=-2.949e+03 GT:AD:DP:GQ:PL 1/1:0,264:267:99:5180,620,0 chrI 193716 . G A 3977.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.0429;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=19.89;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3977,459,0 chrI 193725 . A G 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=200;Dels=0.00;FS=10.419;HaplotypeScore=6.4735;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=0.268;QD=17.84;ReadPosRankSum=2.955;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:3,196:200:99:3567,423,0 chrI 193731 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.8855;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=0.721;QD=17.42;ReadPosRankSum=1.713;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3256,392,0 chrI 193807 . C T 2048 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.96;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2081,237,0 chrI 194101 . A G 2262 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=13.15;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,167:172:99:2295,284,0 chrI 194104 . C T 2569 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.0324;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=14.94;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2602,300,0 chrI 194166 . T C 2126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=176;Dels=0.00;FS=2.569;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;MQRankSum=-1.017;QD=12.08;ReadPosRankSum=2.925;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:2159,264,0 chrI 194169 . T C 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=179;Dels=0.00;FS=2.579;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=-0.441;QD=11.80;ReadPosRankSum=2.915;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:2145,261,0 chrI 194241 . C T 4146.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.8960;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.13;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4146,480,0 chrI 194652 . C T 2831 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.47;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2864,333,0 chrI 194803 . G A 1893 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=17.69;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1926,222,0 chrI 194818 . G A 1922 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=16.86;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:1955,225,0 chrI 194831 . A G 1952 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=16.40;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:1985,237,0 chrI 194922 . G A 3764.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.1169;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.01;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3764,429,0 chrI 195057 . C A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.59;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3563,411,0 chrI 195204 . A G 4811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=226;Dels=0.00;FS=4.350;HaplotypeScore=15.1498;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.180;QD=21.29;ReadPosRankSum=1.717;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4811,596,0 chrI 195324 . C T 3624.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.6287;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.91;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:3624,420,0 chrI 195459 . T C 3681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.752;DP=181;Dels=0.00;FS=19.358;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.428;QD=20.34;ReadPosRankSum=3.778;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:5,175:181:99:3681,458,0 chrI 195585 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.7935;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.62;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3279,390,0 chrI 195677 . A G 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=141;Dels=0.00;FS=5.738;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.360;QD=19.86;ReadPosRankSum=2.921;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:2833,339,0 chrI 195910 . A G 2952 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.6167;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2985,357,0 chrI 195942 . A G 2580 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.50;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2613,312,0 chrI 196196 . G T 2243 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=22.89;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2276,261,0 chrI 196233 . G A 1760 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=20.71;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1793,210,0 chrI 196247 . C T 1433 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=21.07;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1466,171,0 chrI 196248 . G C 1310 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=19.26;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1343,168,0 chrI 196284 . G A 1220 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.03;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.06;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1253,147,0 chrI 196423 . C T 1312 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.03;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.18;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1345,156,0 chrI 196452 . C T 990 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=29.8224;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=16.50;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1023,120,0 chrI 196500 . C T 951 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=12.0984;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;QD=13.99;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:984,114,0 chrI 196523 . T A 1068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=3.074;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=0.025;QD=15.48;ReadPosRankSum=1.682;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1101,132,0 chrI 196542 . A T 1398 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.16;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1431,165,0 chrI 196564 . G A 1527 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=18.85;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1560,177,0 chrI 196587 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=18.13;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1429,162,0 chrI 196623 . C T 1294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.395;DP=77;Dels=0.00;FS=3.522;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.914;QD=16.81;ReadPosRankSum=0.914;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:5,72:77:99:1327,156,0 chrI 196696 . T C 1804 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=20.04;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1837,216,0 chrI 196747 . C A 2592 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=23.14;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2625,297,0 chrI 196779 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.74;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2787,321,0 chrI 196858 . C T 1549 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=17.60;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1582,189,0 chrI 196884 . C T 1351 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=15.18;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1384,165,0 chrI 196891 . G T 1223 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=14.91;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1256,144,0 chrI 196901 . A C 1184 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=13.16;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1217,147,0 chrI 196924 . T C 1946 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.4609;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.22;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1979,237,0 chrI 197024 . A G 2243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.546;QD=20.21;ReadPosRankSum=1.701;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2276,273,0 chrI 197120 . G A 2055 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=20.15;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2088,243,0 chrI 197123 . G A 2058 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=18.88;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2091,243,0 chrI 197236 . G T 2334 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.34;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2367,276,0 chrI 197344 . C T 2012 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=20.53;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2045,234,0 chrI 197350 . G A 1997 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.6884;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=20.38;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2030,234,0 chrI 197393 . A G 1436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=79;Dels=0.00;FS=2.836;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-0.047;QD=18.18;ReadPosRankSum=2.387;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:2,76:79:99:1469,177,0 chrI 197428 . A T 1207 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=17.75;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1240,147,0 chrI 197459 . T C 928 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=15.47;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:961,117,0 chrI 197476 . T C 1057 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;QD=16.78;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1090,132,0 chrI 197484 . T C 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=4.890;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;MQRankSum=0.328;QD=17.08;ReadPosRankSum=1.685;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1297,156,0 chrI 197497 . G A 1310 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=17.47;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1343,159,0 chrI 197560 . A G 1924 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;QD=21.38;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1957,234,0 chrI 197587 . G A 1533 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=21.29;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1566,183,0 chrI 197629 . C T 840 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.62;MQ0=0;QD=14.74;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:873,105,0 chrI 197644 . G A 604 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;QD=10.98;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:78:637,78,0 chrI 197646 . T G 613 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;QD=11.15;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:81:646,81,0 chrI 197656 . A G 806 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=32.56;MQ0=0;QD=11.04;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:839,105,0 chrI 197694 . G T 867 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.91;MQ0=0;QD=11.88;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:900,108,0 chrI 197695 . A G 849 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.91;MQ0=0;QD=11.63;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:882,108,0 chrI 197758 . A G 858 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.00;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:891,108,0 chrI 197760 . G C 790 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.97;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:823,102,0 chrI 197765 . C G 842 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.57;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:875,105,0 chrI 197770 . A G 809 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;QD=13.05;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:842,102,0 chrI 197772 . A G 813 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;QD=13.11;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:846,102,0 chrI 197783 . G A 897 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=13.80;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:930,108,0 chrI 197791 . A G 869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=3.069;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=-1.891;QD=11.59;ReadPosRankSum=2.384;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:902,108,0 chrI 197811 . G A 1054 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=12.40;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1087,135,0 chrI 197819 . A G 1142 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=12.41;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1175,149,0 chrI 197825 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=34.57;MQ0=0;QD=13.49;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1463,180,0 chrI 197873 . G A 1980 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;QD=18.33;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2013,240,0 chrI 197908 . C T 1848 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=41.77;MQ0=0;QD=18.67;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1881,222,0 chrI 197921 . C G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=71.8040;MLEAC=2;MLEAF=1.00;MQ=38.71;MQ0=0;QD=0.22;SB=-9.088e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:6:48,6,0 chrI 197951 . C T 1561 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.27;MQ0=0;QD=18.81;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1594,183,0 chrI 197996 . G T 2102 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;QD=22.60;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2135,249,0 chrI 198013 . T A 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=35.98;MQ0=0;MQRankSum=0.620;QD=21.15;ReadPosRankSum=1.637;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2338,267,0 chrI 198091 . C T 2072 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;QD=18.84;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2105,243,0 chrI 198113 . T C 1840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;MQRankSum=-0.058;QD=17.36;ReadPosRankSum=2.380;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1873,219,0 chrI 198157 . C G 2210 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=18.89;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2243,275,0 chrI 198168 . G T 2141 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.36;MQ0=0;QD=18.14;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2174,258,0 chrI 198190 . T C 2146 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.46;MQ0=0;QD=18.82;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2179,266,0 chrI 198215 . C A 1818 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.29;MQ0=0;QD=17.48;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1851,216,0 chrI 198232 . C G 1347 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=0;QD=15.66;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1380,165,0 chrI 198235 . G T 1163 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.45;MQ0=0;QD=14.18;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1196,144,0 chrI 198244 . G T 1278 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=0;QD=17.51;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1311,150,0 chrI 198252 . C G 1210 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=16.81;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1243,150,0 chrI 198253 . T C 1205 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=16.74;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1238,150,0 chrI 198259 . T C 1034 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.59;MQ0=0;QD=14.77;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1067,129,0 chrI 198267 . A G 1116 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=15.50;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1149,141,0 chrI 198279 . A G 1139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;MQRankSum=-0.707;QD=15.19;ReadPosRankSum=2.384;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1172,144,0 chrI 198287 . A G 1242 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.82;MQ0=0;QD=16.13;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1275,153,0 chrI 198299 . A C 1302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.45;MQ0=0;MQRankSum=-0.922;QD=16.91;ReadPosRankSum=1.687;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1335,165,0 chrI 198331 . G T 2003 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.52;MQ0=0;QD=20.65;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2036,237,0 chrI 198351 . G A 2217 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=22.39;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2250,270,0 chrI 198398 . C T 1951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=90;Dels=0.00;FS=6.173;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=34.41;MQ0=0;MQRankSum=0.836;QD=21.68;ReadPosRankSum=2.053;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:2,86:90:99:1984,242,0 chrI 198418 . A C 1257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=61;Dels=0.00;FS=4.357;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.67;MQ0=0;MQRankSum=-1.732;QD=20.61;ReadPosRankSum=1.675;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1290,167,0 chrI 198422 . T A 1156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=22.66;MQ0=0;MQRankSum=-0.478;QD=19.59;ReadPosRankSum=1.553;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1189,149,0 chrI 198456 . T A 1140 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.09;MQ0=0;QD=20.36;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1173,155,0 chrI 198468 . C G 882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=46;Dels=0.00;FS=3.108;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.39;MQ0=0;MQRankSum=-1.193;QD=19.17;ReadPosRankSum=1.655;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:1,44:46:99:915,122,0 chrI 198482 . G A 936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.757;DP=49;Dels=0.00;FS=9.592;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.55;MQ0=0;MQRankSum=-2.501;QD=19.10;ReadPosRankSum=3.159;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:4,45:49:99:969,128,0 chrI 198514 . C A 867.97 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=24.10;MQ0=0;QD=14.00;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,46:62:99:900,116,0 chrI 198536 . C T 294.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;DP=55;Dels=0.00;FS=90.110;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=0;MQRankSum=-1.709;QD=5.35;ReadPosRankSum=0.455;SB=-2.909e+00 GT:AD:DP:GQ:PL 0/1:33,22:55:99:324,0,155 chrI 198540 . T C 137.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;DP=58;Dels=0.00;FS=100.204;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.03;MQ0=0;MQRankSum=2.763;QD=2.36;ReadPosRankSum=1.130;SB=-2.982e+00 GT:AD:DP:GQ:PL 0/1:25,33:58:99:167,0,286 chrI 198553 . G A 128.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;DP=71;Dels=0.00;FS=127.010;HaplotypeScore=3.5305;MLEAC=1;MLEAF=0.500;MQ=27.80;MQ0=0;MQRankSum=1.346;QD=1.80;ReadPosRankSum=0.352;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:32,39:71:99:158,0,186 chrI 198557 . C T 151.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.902;DP=67;Dels=0.00;FS=135.359;HaplotypeScore=3.5305;MLEAC=1;MLEAF=0.500;MQ=28.02;MQ0=0;MQRankSum=-2.591;QD=2.25;ReadPosRankSum=1.469;SB=-3.013e+00 GT:AD:DP:GQ:PL 0/1:37,30:67:99:181,0,179 chrI 198560 . T C 470 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;QD=7.23;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:60:503,60,0 chrI 198562 . G A 129.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;DP=65;Dels=0.00;FS=130.404;HaplotypeScore=3.5305;MLEAC=1;MLEAF=0.500;MQ=27.99;MQ0=0;MQRankSum=-1.524;QD=1.98;ReadPosRankSum=4.133;SB=-2.962e+00 GT:AD:DP:GQ:PL 0/1:38,27:65:99:159,0,203 chrI 198582 . G A 64.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;DP=41;Dels=0.00;FS=37.390;HaplotypeScore=5.7488;MLEAC=1;MLEAF=0.500;MQ=24.63;MQ0=0;MQRankSum=-0.427;QD=1.56;ReadPosRankSum=0.641;SB=-1.899e+01 GT:AD:DP:GQ:PL 0/1:7,33:41:44:94,0,44 chrI 198586 . A G 127.06 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=12.5447;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=0;QD=2.82;SB=-6.707e+01 GT:AD:DP:GQ:PL 1/1:0,38:45:21:160,21,0 chrI 198589 . A G 115.06 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;DP=45;Dels=0.00;FS=21.569;HaplotypeScore=12.5447;MLEAC=1;MLEAF=0.500;MQ=24.41;MQ0=0;MQRankSum=0.878;QD=2.56;ReadPosRankSum=0.836;SB=-3.071e+00 GT:AD:DP:GQ:PL 0/1:5,38:45:16:145,0,16 chrI 198601 . T A 84.03 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.068;DP=42;Dels=0.00;FS=30.599;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=24.04;MQ0=0;MQRankSum=-0.777;QD=2.00;ReadPosRankSum=0.854;SB=-3.044e+00 GT:AD:DP:GQ:PL 0/1:5,37:42:19:114,0,19 chrI 198603 . T G 82.03 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DP=42;Dels=0.00;FS=30.599;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=24.04;MQ0=0;MQRankSum=0.117;QD=1.95;ReadPosRankSum=1.476;SB=-3.044e+00 GT:AD:DP:GQ:PL 0/1:5,37:42:19:112,0,19 chrI 198604 . C T 87.03 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.554;DP=42;Dels=0.00;FS=30.599;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=24.04;MQ0=0;MQRankSum=0.039;QD=2.07;ReadPosRankSum=0.272;SB=-3.044e+00 GT:AD:DP:GQ:PL 0/1:5,37:42:19:117,0,19 chrI 198648 . C T 121.06 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.89;MQ0=0;QD=4.17;SB=-5.207e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:21:154,21,0 chrI 198652 . A G 124.06 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.61;MQ0=0;QD=4.00;SB=-5.007e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:21:157,21,0 chrI 198657 . C T 150.03 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.32;MQ0=0;QD=5.17;SB=-5.304e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:24:183,24,0 chrI 198664 . A G 147.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.32;MQ0=0;MQRankSum=-0.896;QD=5.07;ReadPosRankSum=1.614;SB=-5.104e+01 GT:AD:DP:GQ:PL 1/1:1,28:29:24:180,24,0 chrI 198671 . A G 126.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.037;DP=24;Dels=0.00;FS=24.409;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;MQRankSum=-1.201;QD=5.25;ReadPosRankSum=-0.052;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:2,22:24:21:159,21,0 chrI 198707 . C T 241 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=9.6651;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.91;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:30:274,30,0 chrI 198713 . C T 257 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=9.6651;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.13;SB=-8.689e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:33:290,33,0 chrI 198851 . G C 225 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=0;QD=20.45;SB=-2.300e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:33:258,33,0 chrI 198856 . T C 172.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=0;QD=19.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:27:205,27,0 chrI 198861 . G C 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrI 198863 . T C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=8.24;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:65,9,0 chrI 198932 . A C 41.97 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.50;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:74,9,0 chrI 198938 . G A 20 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;QD=1.67;SB=13.04 GT:AD:DP:GQ:PL 1/1:0,11:12:6:51,6,0 chrI 198946 . G A 174.03 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=8.29;SB=-4.095e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:207,24,0 chrI 198961 . G A 198.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=9.00;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:231,27,0 chrI 198964 . C T 196.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=8.91;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:229,27,0 chrI 198966 . C T 199.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=9.05;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:232,27,0 chrI 198971 . C T 131.13 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=11.92;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:164,18,0 chrI 198972 . C T 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=3.72;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:73,9,0 chrI 198973 . G A 114.13 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=10.38;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:147,18,0 chrI 198976 . T C 109.13 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=9.92;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:142,18,0 chrI 198980 . G A 122.13 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=11.10;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:155,18,0 chrI 198981 . G A 115.13 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=10.47;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:148,18,0 chrI 198983 . G A 120.13 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=10.92;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:153,18,0 chrI 198986 . C G 121.13 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=11.01;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:154,18,0 chrI 198988 . G A 124.13 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=11.28;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:157,18,0 chrI 198989 . G C 115.13 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=10.47;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:148,18,0 chrI 198990 . C T 119.13 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=10.83;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:152,18,0 chrI 198994 . G A 115.13 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=3.60;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:18:148,18,0 chrI 199012 . C G 112.13 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=3.50;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:18:145,18,0 chrI 202663 . C T 65.51 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=29.6347;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.99;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,33:33:12:98,12,0 chrI 202664 . T C 88.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=29.5644;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.325;QD=2.60;ReadPosRankSum=1.631;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:1,33:34:15:121,15,0 chrI 202692 . G T 149.06 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=4.38;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,34:34:21:182,21,0 chrI 202703 . C T 121.13 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=0;QD=3.27;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,37:37:18:154,18,0 chrI 202710 . T C 190.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=0;MQRankSum=1.574;QD=5.59;ReadPosRankSum=2.306;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:2,32:34:27:223,27,0 chrI 202712 . C G 174.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.476;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=0;MQRankSum=-0.037;QD=5.12;ReadPosRankSum=2.306;SB=-2.380e-02 GT:AD:DP:GQ:PL 1/1:2,32:34:27:207,27,0 chrI 202713 . T C 180.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=0;QD=5.29;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,34:34:27:213,27,0 chrI 202718 . A T 240 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.09;MQ0=0;QD=6.67;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:33:273,33,0 chrI 202724 . A G 234 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=0;QD=7.31;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,32:32:33:267,33,0 chrI 202727 . T C 225 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.76;MQ0=0;QD=7.26;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,31:31:33:258,33,0 chrI 202732 . G A 241 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=0;QD=8.03;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,30:30:33:274,33,0 chrI 202740 . T A 237 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=0;QD=7.90;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,30:30:33:270,33,0 chrI 202761 . C T 278 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.48;MQ0=0;QD=8.69;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:39:311,39,0 chrI 202762 . T A 206 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;MQRankSum=-1.733;QD=6.24;ReadPosRankSum=1.628;SB=-4.302e+01 GT:AD:DP:GQ:PL 1/1:1,32:33:30:239,30,0 chrI 202763 . C G 274 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=8.30;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:39:307,39,0 chrI 202786 . A T 706 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.39;MQ0=0;QD=10.86;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:87:739,87,0 chrI 202801 . G A 924 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;QD=11.85;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:957,114,0 chrI 202945 . G A 1017 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.99;MQ0=0;QD=12.56;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1050,129,0 chrI 202953 . A G 1055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=5.063;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.48;MQ0=0;MQRankSum=-0.382;QD=13.70;ReadPosRankSum=1.687;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1088,138,0 chrI 202957 . T C 1059 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.43;MQ0=0;QD=13.58;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1092,138,0 chrI 202977 . A T 1568 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.54;MQ0=0;QD=17.62;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1601,189,0 chrI 202994 . G T 1823 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=37.91;MQ0=0;QD=18.23;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1856,225,0 chrI 203104 . C T 2220 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=19.14;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2253,264,0 chrI 203105 . A G 2016 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.381;DP=115;Dels=0.00;FS=8.428;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;MQRankSum=-2.328;QD=17.53;ReadPosRankSum=3.381;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:4,111:115:99:2049,246,0 chrI 203111 . C T 2080 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=18.57;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2113,249,0 chrI 203180 . T C 1272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.451;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;MQRankSum=-1.311;QD=16.96;ReadPosRankSum=1.685;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1305,162,0 chrI 203214 . G C 1559 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=19.49;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1592,192,0 chrI 203215 . C T 1576 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=19.70;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1609,189,0 chrI 203283 . A T 1983 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.5638;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=20.66;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2016,231,0 chrI 203313 . G A 1895 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=19.14;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1928,222,0 chrI 203349 . C T 2110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=100;Dels=0.00;FS=4.002;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=41.17;MQ0=0;MQRankSum=0.954;QD=21.10;ReadPosRankSum=1.485;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2143,243,0 chrI 203364 . A G 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=103;Dels=0.00;FS=4.516;HaplotypeScore=7.5425;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;MQRankSum=-0.892;QD=19.13;ReadPosRankSum=1.697;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,98:103:99:2003,240,0 chrI 203458 . C T 2578 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=21.66;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2611,294,0 chrI 203461 . G A 2461 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=1;QD=21.40;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2494,285,0 chrI 203606 . C T 1938 filter AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1291;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=38;QD=14.79;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1971,234,0 chrI 203660 . C T 2055 filter AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=34.36;MQ0=13;QD=17.72;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2088,243,0 chrI 203912 . A T 4110.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.0180;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=0;QD=22.22;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4110,494,0 chrI 203922 . A G 3818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=184;Dels=0.00;FS=6.738;HaplotypeScore=9.0116;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;MQRankSum=-1.638;QD=20.75;ReadPosRankSum=1.676;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3818,476,0 chrI 203957 . A G 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=105;Dels=0.00;FS=10.697;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=27.76;MQ0=0;MQRankSum=-2.168;QD=18.81;ReadPosRankSum=2.403;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2008,257,0 chrI 203973 . G A 1091 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=0;QD=17.89;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1124,149,0 chrI 203984 . G A 683 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.77;MQ0=0;QD=16.66;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:95:716,95,0 chrI 204012 . A G 261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.022;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=0;MQRankSum=-3.107;QD=11.86;ReadPosRankSum=3.022;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:4,18:22:36:294,36,0 chrI 204014 . C T 264 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.00;MQ0=0;QD=14.67;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:36:297,36,0 chrI 204029 . T C 235 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=0;QD=9.04;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:33:268,33,0 chrI 204035 . C T 371 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.79;MQ0=0;QD=10.91;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:48:404,48,0 chrI 204041 . C A 482 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.05;MQ0=0;QD=10.95;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:60:515,60,0 chrI 204043 . A T 495 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.05;MQ0=0;QD=11.25;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:60:528,60,0 chrI 204047 . T C 625 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=0;QD=9.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:81:658,81,0 chrI 204050 . T C 651 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.35;MQ0=0;QD=10.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:81:684,81,0 chrI 204071 . G A 1314 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.26;MQ0=0;QD=12.40;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1347,159,0 chrI 204074 . C T 1345 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.30;MQ0=0;QD=11.80;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1378,162,0 chrI 204113 . T G 1749 filter AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=0;QD=12.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:1782,224,0 chrI 204116 . A T 1790 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=0;QD=12.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1823,224,0 chrI 204125 . C A 1588 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.06;MQ0=0;QD=13.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1621,200,0 chrI 204126 . A G 1555 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.06;MQ0=0;QD=12.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1588,200,0 chrI 204131 . A C 1555 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.97;MQ0=0;MQRankSum=0.664;QD=12.96;ReadPosRankSum=1.703;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1588,197,0 chrI 204146 . A G 1148 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.04;MQ0=0;MQRankSum=0.512;QD=13.05;ReadPosRankSum=1.693;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1181,152,0 chrI 204149 . G A 1068 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.78;MQ0=0;MQRankSum=0.397;QD=12.87;ReadPosRankSum=1.440;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1101,140,0 chrI 204155 . C G 856 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=23.92;MQ0=0;QD=12.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:889,116,0 chrI 204167 . C T 701 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.86;MQ0=0;QD=13.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:96:734,96,0 chrI 204173 . C T 454 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=15.13;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:63:487,63,0 chrI 204174 . C T 454 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=15.13;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:63:487,63,0 chrI 204176 . A G 452 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=15.07;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:63:485,63,0 chrI 204178 . G C 445 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=14.83;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:63:478,63,0 chrI 204186 . A G 215 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=0;QD=11.94;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:33:248,33,0 chrI 204188 . C T 172.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=0;QD=9.56;SB=-2.368e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:27:205,27,0 chrI 204194 . T C 58.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=7.31;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:91,12,0 chrI 204195 . G A 79.26 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=9.91;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:112,15,0 chrI 204197 . C T 77.26 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=9.66;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:110,15,0 chrI 204200 . T A 79.26 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=9.91;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:112,15,0 chrI 204203 . C T 80.26 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=10.03;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:113,15,0 chrI 204212 . T C 54.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=6.81;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:87,12,0 chrI 204216 . G A 54.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=7.79;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:7:12:87,12,0 chrI 205805 . C T 156.12 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=67;Dels=0.00;FS=4.260;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.26;MQ0=51;MQRankSum=-1.085;QD=2.33;ReadPosRankSum=-0.434;SB=-2.118e+00 GT:AD:DP:GQ:PL 1/1:25,42:67:5:187,5,0 chrI 205814 . G T 148.54 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.302;DP=67;Dels=0.00;FS=4.260;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.26;MQ0=51;MQRankSum=-1.085;QD=2.22;ReadPosRankSum=-0.434;SB=-2.533e+00 GT:AD:DP:GQ:PL 1/1:25,42:67:4:179,4,0 chrI 205825 . G A 149.54 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.423;DP=68;Dels=0.00;FS=30.584;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=9.19;MQ0=52;MQRankSum=2.646;QD=2.20;ReadPosRankSum=-3.387;SB=-2.533e+00 GT:AD:DP:GQ:PL 1/1:58,10:68:4:180,4,0 chrI 205877 . T C 147.12 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=30;Dels=0.00;FS=10.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.76;MQ0=20;MQRankSum=-0.696;QD=4.90;ReadPosRankSum=1.393;SB=-2.118e+00 GT:AD:DP:GQ:PL 1/1:18,11:30:5:178,5,0 chrI 205883 . T C 197 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.62;MQ0=10;QD=9.85;SB=-2.500e+01 GT:AD:DP:GQ:PL 1/1:3,16:20:30:230,30,0 chrI 205892 . A T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=1;QD=5.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,3:4:6:54,6,0 chrI 205940 . C T 91.26 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.13;MQ0=1;QD=13.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:15:124,15,0 chrI 205949 . C T 184.01 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.10;MQ0=2;QD=11.50;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:27:217,27,0 chrI 205955 . C T 131.06 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.58;MQ0=3;QD=6.90;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:21:164,21,0 chrI 206001 . C G 253 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.584;DP=29;Dels=0.00;FS=5.441;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.53;MQ0=8;MQRankSum=3.153;QD=8.72;ReadPosRankSum=1.829;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:11,18:29:36:286,36,0 chrI 206036 . A G 63.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.073;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=19.09;MQ0=7;MQRankSum=-0.413;QD=2.27;ReadPosRankSum=1.569;SB=-9.639e+01 GT:AD:DP:GQ:PL 1/1:1,27:28:12:96,12,0 chrI 206294 . G T 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.030;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=18.6966;MLEAC=2;MLEAF=1.00;MQ=20.48;MQ0=0;MQRankSum=-4.722;QD=0.24;ReadPosRankSum=-2.272;SB=1.24 GT:AD:DP:GQ:PL 1/1:21,45:67:6:47,6,0 chrI 206297 . T A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=20.9099;MLEAC=2;MLEAF=1.00;MQ=20.96;MQ0=0;MQRankSum=-5.196;QD=0.27;ReadPosRankSum=-2.780;SB=1.24 GT:AD:DP:GQ:PL 1/1:23,44:67:6:49,6,0 chrI 206324 . A T 58.51 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=39.9335;MLEAC=2;MLEAF=1.00;MQ=23.33;MQ0=0;QD=1.10;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,53:53:12:91,12,0 chrI 206327 . C T 33.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.480;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=30.4296;MLEAC=1;MLEAF=0.500;MQ=23.21;MQ0=0;MQRankSum=4.100;QD=0.64;ReadPosRankSum=4.184;SB=-3.160e+00 GT:AD:DP:GQ:PL 0/1:13,39:52:10:63,0,10 chrI 206345 . C T 205.19 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.627;DP=66;Dels=0.00;FS=7.189;HaplotypeScore=12.7209;MLEAC=2;MLEAF=1.00;MQ=25.02;MQ0=1;MQRankSum=-2.037;QD=3.11;ReadPosRankSum=3.136;SB=-1.862e+02 GT:AD:DP:GQ:PL 1/1:12,54:66:8:237,8,0 chrI 206351 . T C 425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.044;DP=88;Dels=0.00;FS=23.174;HaplotypeScore=74.0907;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=1;MQRankSum=-1.011;QD=4.83;ReadPosRankSum=2.876;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:22,66:88:37:458,37,0 chrI 206406 . C G 1193.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.646;DP=311;Dels=0.00;FS=65.474;HaplotypeScore=165.2497;MLEAC=1;MLEAF=0.500;MQ=24.50;MQ0=3;MQRankSum=-1.772;QD=3.84;ReadPosRankSum=7.585;SB=-5.150e+02 GT:AD:DP:GQ:PL 0/1:196,112:311:99:1223,0,680 chrI 206417 . T C 783.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.447;DP=358;Dels=0.00;FS=12.705;HaplotypeScore=223.7711;MLEAC=1;MLEAF=0.500;MQ=24.40;MQ0=3;MQRankSum=-0.354;QD=2.19;ReadPosRankSum=-4.092;SB=-2.770e+02 GT:AD:DP:GQ:PL 0/1:244,114:358:99:813,0,1407 chrI 206423 . C T 1298.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;DP=405;Dels=0.00;FS=94.814;HaplotypeScore=246.5578;MLEAC=1;MLEAF=0.500;MQ=24.26;MQ0=3;MQRankSum=-1.694;QD=3.20;ReadPosRankSum=7.504;SB=-5.930e+02 GT:AD:DP:GQ:PL 0/1:260,145:405:99:1328,0,1037 chrI 206441 . A G 3015 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-7.965;DP=419;Dels=0.00;FS=185.927;HaplotypeScore=261.0143;MLEAC=2;MLEAF=1.00;MQ=24.56;MQ0=2;MQRankSum=-5.143;QD=7.20;ReadPosRankSum=3.447;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:129,290:419:34:3048,34,0 chrI 206465 . C T 507.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.570;DP=417;Dels=0.00;FS=358.513;HaplotypeScore=393.2868;MLEAC=1;MLEAF=0.500;MQ=24.50;MQ0=4;MQRankSum=9.380;QD=1.22;ReadPosRankSum=0.157;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:230,187:417:99:537,0,1932 chrI 206480 . C T 2310.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.423;DP=418;Dels=0.00;FS=18.251;HaplotypeScore=111.3101;MLEAC=1;MLEAF=0.500;MQ=25.18;MQ0=6;MQRankSum=-5.080;QD=5.53;ReadPosRankSum=4.435;SB=-1.369e+03 GT:AD:DP:GQ:PL 0/1:101,314:418:99:2340,0,352 chrI 206489 . G T 2347.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.922;DP=426;Dels=0.00;FS=8.124;HaplotypeScore=188.8765;MLEAC=1;MLEAF=0.500;MQ=25.19;MQ0=9;MQRankSum=-2.758;QD=5.51;ReadPosRankSum=6.126;SB=-1.260e+03 GT:AD:DP:GQ:PL 0/1:70,300:426:99:2377,0,621 chrI 206495 . T C 743.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;DP=423;Dels=0.00;FS=13.684;HaplotypeScore=309.4821;MLEAC=1;MLEAF=0.500;MQ=25.24;MQ0=10;MQRankSum=2.707;QD=1.76;ReadPosRankSum=-0.537;SB=-6.501e+01 GT:AD:DP:GQ:PL 0/1:353,70:423:99:773,0,2433 chrI 206500 . G A 602.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.762;DP=393;Dels=0.00;FS=449.931;HaplotypeScore=173.0708;MLEAC=1;MLEAF=0.500;MQ=25.24;MQ0=10;MQRankSum=5.150;QD=1.53;ReadPosRankSum=0.882;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:229,163:393:99:632,0,2466 chrI 206523 . G A 541.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.298;DP=322;Dels=0.00;FS=371.446;HaplotypeScore=5.1772;MLEAC=1;MLEAF=0.500;MQ=24.97;MQ0=10;MQRankSum=-4.416;QD=1.68;ReadPosRankSum=-2.447;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:202,120:322:99:571,0,1475 chrI 206541 . C G 349.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;DP=294;Dels=0.00;FS=92.877;HaplotypeScore=8.3573;MLEAC=1;MLEAF=0.500;MQ=25.20;MQ0=8;MQRankSum=-2.027;QD=1.19;ReadPosRankSum=-1.560;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:231,62:294:99:379,0,1682 chrI 206552 . T C 341.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;DP=273;Dels=0.00;FS=46.773;HaplotypeScore=72.1251;MLEAC=1;MLEAF=0.500;MQ=25.58;MQ0=4;MQRankSum=1.799;QD=1.25;ReadPosRankSum=2.882;SB=-4.440e+02 GT:AD:DP:GQ:PL 0/1:124,149:273:99:371,0,1550 chrI 206558 . T C 1654.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.700;DP=263;Dels=0.00;FS=60.155;HaplotypeScore=117.2230;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=4;MQRankSum=1.687;QD=6.29;ReadPosRankSum=3.454;SB=-1.043e+03 GT:AD:DP:GQ:PL 0/1:43,218:263:99:1684,0,190 chrI 206564 . G T 378.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.408;DP=249;Dels=0.00;FS=44.929;HaplotypeScore=165.5023;MLEAC=1;MLEAF=0.500;MQ=25.92;MQ0=1;MQRankSum=2.993;QD=1.52;ReadPosRankSum=7.810;SB=-3.830e+02 GT:AD:DP:GQ:PL 0/1:100,146:249:99:408,0,1422 chrI 206570 . C T 408.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.944;DP=221;Dels=0.00;FS=72.041;HaplotypeScore=193.9755;MLEAC=1;MLEAF=0.500;MQ=26.49;MQ0=0;MQRankSum=3.851;QD=1.85;ReadPosRankSum=8.639;SB=-1.290e+02 GT:AD:DP:GQ:PL 0/1:103,111:221:99:438,0,850 chrI 206573 . T G 429.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.390;DP=197;Dels=0.00;FS=117.537;HaplotypeScore=161.3551;MLEAC=1;MLEAF=0.500;MQ=25.93;MQ0=0;MQRankSum=5.436;QD=2.18;ReadPosRankSum=7.079;SB=-1.300e+02 GT:AD:DP:GQ:PL 0/1:73,104:197:99:459,0,608 chrI 206575 . A G 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.611;DP=189;Dels=0.00;FS=9.630;HaplotypeScore=191.8990;MLEAC=1;MLEAF=0.500;MQ=25.90;MQ0=0;MQRankSum=-2.766;QD=0.24;ReadPosRankSum=-4.884;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:170,19:189:75:75,0,966 chrI 206576 . A G 114.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.943;DP=165;Dels=0.00;FS=80.345;HaplotypeScore=157.5799;MLEAC=1;MLEAF=0.500;MQ=26.38;MQ0=0;MQRankSum=-4.577;QD=0.69;ReadPosRankSum=-2.492;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,35:165:99:144,0,755 chrI 206580 . T A 921 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=89.0246;MLEAC=2;MLEAF=1.00;MQ=27.42;MQ0=0;MQRankSum=0.840;QD=6.98;ReadPosRankSum=1.706;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:1,131:132:99:954,111,0 chrI 206582 . T C 757 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.909;DP=136;Dels=0.00;FS=1.669;HaplotypeScore=95.1732;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;MQRankSum=0.144;QD=5.57;ReadPosRankSum=4.161;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:8,127:136:61:790,61,0 chrI 206585 . T C 661.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.283;DP=145;Dels=0.00;FS=6.154;HaplotypeScore=77.0696;MLEAC=1;MLEAF=0.500;MQ=27.55;MQ0=0;MQRankSum=1.471;QD=4.57;ReadPosRankSum=2.457;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:4,117:145:47:694,47,0 chrI 206591 . T C 758.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-8.432;DP=197;Dels=0.00;FS=262.815;HaplotypeScore=83.1845;MLEAC=2;MLEAF=1.00;MQ=27.06;MQ0=0;MQRankSum=4.270;QD=3.85;ReadPosRankSum=8.373;SB=-1.256e+02 GT:AD:DP:GQ:PL 1/1:60,137:197:4:789,4,0 chrI 206594 . A T 1104 SnpCluster AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=86.5913;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=5.55;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:1137,135,0 chrI 206597 . C T 151.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.560;DP=209;Dels=0.00;FS=117.310;HaplotypeScore=59.1454;MLEAC=1;MLEAF=0.500;MQ=27.02;MQ0=0;MQRankSum=-1.467;QD=0.72;ReadPosRankSum=-2.987;SB=-4.400e+02 GT:AD:DP:GQ:PL 0/1:112,97:209:99:181,0,716 chrI 206606 . G A 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.541;DP=217;Dels=0.00;FS=368.577;HaplotypeScore=283.7562;MLEAC=1;MLEAF=0.500;MQ=26.98;MQ0=0;MQRankSum=-3.447;QD=0.12;ReadPosRankSum=-2.880;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:149,67:217:55:55,0,849 chrI 206621 . T C 623.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.314;DP=284;Dels=0.00;FS=12.574;HaplotypeScore=102.4606;MLEAC=1;MLEAF=0.500;MQ=27.60;MQ0=0;MQRankSum=-0.959;QD=2.19;ReadPosRankSum=4.296;SB=-1.049e+03 GT:AD:DP:GQ:PL 0/1:131,153:284:99:653,0,1433 chrI 206624 . C T 692.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.157;DP=307;Dels=0.00;FS=1.943;HaplotypeScore=101.8566;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=0;MQRankSum=-1.446;QD=2.25;ReadPosRankSum=1.805;SB=-8.670e+02 GT:AD:DP:GQ:PL 0/1:138,162:307:99:722,0,1665 chrI 206675 . A T 7095.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=406;Dels=0.00;FS=0.000;HaplotypeScore=4.3261;MLEAC=2;MLEAF=1.00;MQ=31.40;MQ0=5;MQRankSum=0.721;QD=17.48;ReadPosRankSum=1.723;SB=-3.408e+03 GT:AD:DP:GQ:PL 1/1:1,405:406:99:7095,827,0 chrI 206676 . T G 1953.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.914;DP=416;Dels=0.00;FS=17.883;HaplotypeScore=3.5374;MLEAC=1;MLEAF=0.500;MQ=31.24;MQ0=5;MQRankSum=0.045;QD=4.69;ReadPosRankSum=-2.290;SB=-1.551e+03 GT:AD:DP:GQ:PL 0/1:213,202:416:99:1983,0,3461 chrI 207072 . G T 3592.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.161;DP=244;Dels=0.00;FS=7.935;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=27;MQRankSum=6.888;QD=14.72;ReadPosRankSum=-7.024;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:49,194:244:99:3592,217,0 chrI 207179 . T C 3990.01 filter AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.1963;MLEAC=2;MLEAF=1.00;MQ=36.18;MQ0=6;QD=17.58;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:3990,491,0 chrI 207233 . T C 1312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.259;DP=89;Dels=0.00;FS=2.372;HaplotypeScore=12.3064;MLEAC=2;MLEAF=1.00;MQ=34.25;MQ0=3;MQRankSum=3.352;QD=14.74;ReadPosRankSum=3.040;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:4,84:89:99:1345,165,0 chrI 207241 . C T 925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.109;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.9048;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=3;MQRankSum=3.686;QD=13.03;ReadPosRankSum=1.348;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:6,65:71:99:958,114,0 chrI 207249 . C T 523 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.478;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.0595;MLEAC=2;MLEAF=1.00;MQ=21.58;MQ0=9;MQRankSum=4.391;QD=9.02;ReadPosRankSum=-0.098;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:20,37:58:66:556,66,0 chrI 207254 . C T 146.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.774;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=17.07;MQ0=11;MQRankSum=3.037;QD=3.48;ReadPosRankSum=-0.099;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:25,17:42:21:179,21,0 chrI 207256 . A C 114.54 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.012;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=16.97;MQ0=11;MQRankSum=1.488;QD=2.55;ReadPosRankSum=2.020;SB=0.579 GT:AD:DP:GQ:PL 1/1:32,13:45:2:144,2,0 chrI 207257 . A G 161.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.29;MQ0=11;QD=3.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:24:194,24,0 chrI 207259 . G A 109.03 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.997;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=15.48;MQ0=14;MQRankSum=1.895;QD=2.23;ReadPosRankSum=0.324;SB=-2.801e-02 GT:AD:DP:GQ:PL 0/1:35,13:49:20:139,0,20 chrI 207299 . G A 770 filter AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=18.80;MQ0=64;QD=5.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,148:152:93:803,93,0 chrI 207395 . T C 400 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=18.43;MQ0=37;QD=4.88;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:54:433,54,0 chrI 207407 . A G 116.13 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.68;MQ0=8;QD=4.84;SB=-2.412e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:18:149,18,0 chrI 207416 . T C 65.51 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.00;MQ0=5;QD=4.09;SB=-2.526e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:98,12,0 chrI 222056 . C T 3505.01 filter AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=5.3884;MLEAC=2;MLEAF=1.00;MQ=18.52;MQ0=59;QD=13.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:3505,402,0 chrI 222086 . T C 2836 filter AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.46;MQ0=60;QD=10.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,272:274:99:2869,342,0 chrI 222095 . C T 2676 filter AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.15;MQ0=64;QD=10.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:2709,318,0 chrI 222122 . C T 1220 filter AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.63;MQ0=97;QD=5.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:1253,144,0 chrI 222155 . C T 225 filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.97;MQ0=106;QD=1.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,147:147:30:258,30,0 chrI 222191 . C T 1986 filter AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.05;MQ0=75;QD=12.18;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2019,243,0 chrI 222206 . G C 2767 filter AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.40;MQ0=44;QD=15.04;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:2800,339,0 chrI 222222 . C T 3796.01 filter AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.00;MQ0=21;QD=17.02;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:3796,438,0 chrI 222226 . A G 3873.01 filter AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.23;MQ0=15;QD=15.49;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,235:250:99:3873,459,0 chrI 222236 . T C 5395.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.876;DP=372;Dels=0.00;FS=47.174;HaplotypeScore=51.5270;MLEAC=2;MLEAF=1.00;MQ=26.36;MQ0=2;MQRankSum=2.548;QD=14.50;ReadPosRankSum=6.309;SB=-2.918e+03 GT:AD:DP:GQ:PL 1/1:15,357:372:99:5395,644,0 chrI 222264 . G A 346.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.913;DP=676;Dels=0.00;FS=0.804;HaplotypeScore=4.7574;MLEAC=1;MLEAF=0.500;MQ=24.51;MQ0=49;MQRankSum=0.392;QD=0.51;ReadPosRankSum=1.243;SB=-3.070e+02 GT:AD:DP:GQ:PL 0/1:559,115:675:99:376,0,8071 chrI 222329 . T C 6405.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.485;DP=794;Dels=0.00;FS=4.189;HaplotypeScore=425.2198;MLEAC=2;MLEAF=1.00;MQ=22.67;MQ0=81;MQRankSum=2.321;QD=8.07;ReadPosRankSum=5.906;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:14,776:794:99:6405,793,0 chrI 222506 . C T 3927.01 filter AC=2;AF=1.00;AN=2;DP=986;DS;Dels=0.00;FS=0.000;HaplotypeScore=36.6791;MLEAC=2;MLEAF=1.00;MQ=14.80;MQ0=519;QD=3.98;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,985:986:99:3927,473,0 chrI 222533 . A G 8294.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=85.1100;MLEAC=2;MLEAF=1.00;MQ=18.77;MQ0=334;MQRankSum=-0.438;QD=8.29;ReadPosRankSum=2.404;SB=-4.586e+03 GT:AD:DP:GQ:PL 1/1:2,984:1000:99:8294,1001,0 chrI 222605 . T C 13620.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.630;DP=980;DS;Dels=0.00;FS=4.863;HaplotypeScore=26.8906;MLEAC=2;MLEAF=1.00;MQ=22.32;MQ0=163;MQRankSum=-1.165;QD=13.90;ReadPosRankSum=-1.352;SB=-6.200e+03 GT:AD:DP:GQ:PL 1/1:7,968:980:99:13620,1674,0 chrI 222815 . T C 6523.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.576;DP=927;DS;Dels=0.00;FS=4.554;HaplotypeScore=38.6888;MLEAC=1;MLEAF=0.500;MQ=22.10;MQ0=209;MQRankSum=0.952;QD=7.04;ReadPosRankSum=-0.177;SB=-2.797e+03 GT:AD:DP:GQ:PL 0/1:195,730:927:99:6523,0,639 chrI 222849 . A G 302.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.119;DP=915;Dels=0.00;FS=0.000;HaplotypeScore=72.0004;MLEAC=1;MLEAF=0.500;MQ=18.60;MQ0=418;MQRankSum=-0.704;QD=0.33;ReadPosRankSum=0.514;SB=-1.400e+02 GT:AD:DP:GQ:PL 0/1:737,173:915:99:332,0,4375 chrI 222857 . T C 272.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.409;DP=865;Dels=0.00;FS=1.015;HaplotypeScore=48.2943;MLEAC=1;MLEAF=0.500;MQ=17.40;MQ0=455;MQRankSum=-0.922;QD=0.31;ReadPosRankSum=0.081;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:694,162:865:99:302,0,3420 chrI 222917 . A C 147.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.199;DP=511;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=1;MLEAF=0.500;MQ=8.23;MQ0=440;MQRankSum=0.326;QD=0.29;ReadPosRankSum=-0.092;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:299,212:511:99:177,0,267 chrI 223062 . C T 2615 filter AC=2;AF=1.00;AN=2;DP=339;Dels=0.01;FS=0.000;HaplotypeScore=12.7548;MLEAC=2;MLEAF=1.00;MQ=21.40;MQ0=164;QD=7.71;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,334:334:99:2648,309,0 chrI 223088 . G A 204.01 filter AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.16;MQ0=182;QD=0.84;SB=-4.696e+01 GT:AD:DP:GQ:PL 1/1:0,243:244:27:237,27,0 chrI 223175 . A T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=88.1525;MLEAC=2;MLEAF=1.00;MQ=36.83;MQ0=22;MQRankSum=1.703;QD=0.16;ReadPosRankSum=1.703;SB=-2.777e+01 GT:AD:DP:GQ:PL 1/1:3,134:137:6:53,6,0 chrI 223184 . G A 1957 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;QD=14.28;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1990,228,0 chrI 223248 . A G 1457 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.045;DP=118;Dels=0.00;FS=2.252;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=6;MQRankSum=-1.046;QD=12.35;ReadPosRankSum=5.426;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:11,107:118:99:1490,186,0 chrI 223251 . T C 1518 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=7;QD=14.74;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1551,183,0 chrI 223270 . C T 686 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.18;MQ0=20;QD=11.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:81:719,81,0 chrI 223293 . T C 299 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.03;MQ0=14;QD=8.08;SB=-7.050e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:42:332,42,0 chrI 223309 . C T 90.26 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.71;MQ0=15;QD=3.47;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:15:123,15,0 chrI 223321 . G A 45.97 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.48;MQ0=15;QD=2.09;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:78,9,0 chrI 223325 . G A 48.97 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.52;MQ0=15;QD=2.33;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:9:81,9,0 chrI 223359 . A G 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=1;QD=4.46;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:49,6,0 chrI 223361 . G A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=1;QD=4.95;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:51,6,0 chrI 223363 . G A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=1;QD=4.95;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:51,6,0 chrI 223390 . A C 68.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=2;QD=8.56;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:101,12,0 chrI 223396 . C G 63.51 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.94;MQ0=2;QD=6.35;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:96,12,0 chrI 223421 . T C 90.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=1;QD=10.03;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:123,15,0 chrI 223433 . A T 94.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=1;QD=10.47;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:127,15,0 chrI 223446 . G A 100.26 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.71;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:133,15,0 chrI 223448 . A G 90.26 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.04;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:123,15,0 chrI 223450 . A G 88.26 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.71;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:121,15,0 chrI 223460 . A G 66.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=3.9576;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.30;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:99,12,0 chrI 223468 . T C 40.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.24;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:73,9,0 chrI 223475 . G T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:51,6,0 chrI 225646 . A G 443 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=30.6111;MLEAC=2;MLEAF=1.00;MQ=15.58;MQ0=44;QD=3.69;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:1,115:120:60:476,60,0 chrI 225711 . A G 1533 filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.20;MQ0=20;QD=11.53;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1566,197,0 chrI 225727 . A G 1547 filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.24;MQ0=6;QD=13.00;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1580,197,0 chrI 225738 . C T 911 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.86;MQ0=0;QD=18.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:944,120,0 chrI 225741 . A G 625 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.30;MQ0=0;QD=17.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:84:658,84,0 chrI 225745 . A G 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.94;MQ0=0;QD=7.39;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:99,12,0 chrI 225819 . C T 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.45;MQ0=0;QD=2.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:9:65,9,0 chrI 225822 . A T 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.44;MQ0=0;QD=1.74;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:9:65,9,0 chrI 225826 . C T 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.52;MQ0=0;QD=1.65;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:9:65,9,0 chrI 225828 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.52;MQ0=0;QD=1.65;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:9:65,9,0 chrI 225843 . A G 245 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.39;MQ0=1;QD=4.90;SB=-8.666e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:36:278,36,0 chrI 225849 . C A 463 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.50;MQ0=3;QD=6.91;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:60:496,60,0 chrI 225858 . C G 584 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.92;MQ0=5;QD=7.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:78:617,78,0 chrI 225859 . A G 613 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.91;MQ0=6;QD=7.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:80:81:646,81,0 chrI 225879 . C T 876 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.09;MQ0=30;QD=6.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:909,108,0 chrI 225945 . C T 358 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=12.98;MQ0=43;QD=4.26;SB=-6.622e-03 GT:AD:DP:GQ:PL 1/1:0,82:84:48:391,48,0 chrI 225960 . C T 105.13 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.05;MQ0=30;QD=1.98;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,52:53:18:138,18,0 chrI 225974 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=10.49;MQ0=12;MQRankSum=-0.742;QD=0.63;ReadPosRankSum=0.742;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,18:19:6:43,6,0 chrI 225979 . A C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.45;MQ0=6;MQRankSum=0.727;QD=1.20;ReadPosRankSum=0.727;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,9:10:6:43,6,0 chrI 225981 . C A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.13;MQ0=4;QD=1.72;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrI 226476 . C A 1753 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=1.8675;MLEAC=2;MLEAF=1.00;MQ=24.22;MQ0=45;QD=5.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,331:332:99:1786,207,0 chrI 226482 . T C 1648 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.62;MQ0=30;QD=4.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,333:334:99:1681,201,0 chrI 226483 . C T 1692 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.69;MQ0=28;QD=5.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,332:332:99:1725,201,0 chrI 226497 . C T 1482 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=10;QD=4.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,345:345:99:1515,180,0 chrI 226503 . C T 1249 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=3.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,345:345:99:1282,150,0 chrI 226506 . C T 1253 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=24.84;MQ0=0;QD=3.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,335:335:99:1286,153,0 chrI 226512 . C T 1242 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=24.60;MQ0=0;QD=3.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,329:329:99:1275,150,0 chrI 226521 . A G 1160 filter AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=0;QD=3.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,322:323:99:1193,147,0 chrI 226540 . C T 1103 filter AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=22.68;MQ0=3;QD=3.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,292:292:99:1136,135,0 chrI 226556 . A G 604 filter AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=1.8245;MLEAC=2;MLEAF=1.00;MQ=21.45;MQ0=4;QD=2.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,252:252:78:637,78,0 chrI 226557 . A C 601 filter AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=1.8401;MLEAC=2;MLEAF=1.00;MQ=21.41;MQ0=5;QD=2.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,251:253:78:634,78,0 chrI 226587 . A T 292 filter AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.87;MQ0=78;QD=1.26;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,231:231:39:325,39,0 chrI 226608 . T C 155.03 filter AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.35;MQ0=115;QD=0.76;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,204:204:24:188,24,0 chrI 226629 . T C 1309 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.132;DP=256;Dels=0.00;FS=29.023;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=16.01;MQ0=115;MQRankSum=2.252;QD=5.11;ReadPosRankSum=4.070;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:6,250:256:99:1342,168,0 chrI 226635 . C T 1894 filter AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=18.23;MQ0=115;QD=6.23;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,304:304:99:1927,228,0 chrI 226686 . T C 8039.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.356;DP=562;Dels=0.00;FS=17.830;HaplotypeScore=11.7811;MLEAC=2;MLEAF=1.00;MQ=24.44;MQ0=40;MQRankSum=-1.423;QD=14.30;ReadPosRankSum=3.396;SB=-2.981e+03 GT:AD:DP:GQ:PL 1/1:4,557:562:99:8039,997,0 chrI 226716 . T C 10190.01 filter AC=2;AF=1.00;AN=2;DP=664;Dels=0.00;FS=0.000;HaplotypeScore=47.6967;MLEAC=2;MLEAF=1.00;MQ=24.30;MQ0=19;QD=15.35;SB=-4.523e+03 GT:AD:DP:GQ:PL 1/1:0,657:663:99:10190,1300,0 chrI 226752 . T C 4638.01 filter AC=2;AF=1.00;AN=2;DP=421;Dels=0.00;FS=0.000;HaplotypeScore=6.7155;MLEAC=2;MLEAF=1.00;MQ=19.62;MQ0=41;QD=11.02;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,414:421:99:4638,598,0 chrI 226755 . T C 4469.01 filter AC=2;AF=1.00;AN=2;DP=408;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=19.09;MQ0=44;QD=10.95;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,406:408:99:4469,585,0 chrI 226794 . C T 1115 filter AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=28.5772;MLEAC=2;MLEAF=1.00;MQ=14.17;MQ0=79;QD=4.26;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,260:262:99:1148,152,0 chrI 226833 . G A 249 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.65;MQ0=67;QD=2.74;SB=-1.032e-02 GT:AD:DP:GQ:PL 1/1:0,91:91:33:282,33,0 chrI 226898 . T A 1999 filter AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.94;MQ0=10;QD=11.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:2032,243,0 chrI 227348 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.45;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:53,6,0 chrI 227362 . C G 60.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.747;QD=7.56;ReadPosRankSum=0.747;SB=3.94 GT:AD:DP:GQ:PL 1/1:1,7:8:12:93,12,0 chrI 227446 . G A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.107;QD=1.80;ReadPosRankSum=-1.739;SB=-1.134e+00 GT:AD:DP:GQ:PL 1/1:1,10:11:6:51,6,0 chrI 227449 . T A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.107;QD=1.80;ReadPosRankSum=-1.739;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:1,10:11:6:51,6,0 chrI 227451 . T C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.791;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.423;QD=1.44;ReadPosRankSum=-1.423;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,10:11:6:47,6,0 chrI 227455 . C T 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.107;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.158;QD=1.80;ReadPosRankSum=-1.423;SB=-3.160e-01 GT:AD:DP:GQ:PL 1/1:1,10:11:6:51,6,0 chrI 227462 . A G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=4.8729;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.751;QD=2.20;ReadPosRankSum=-0.751;SB=2.36 GT:AD:DP:GQ:PL 1/1:1,8:9:6:51,6,0 chrI 227464 . C T 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=5.8596;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.751;QD=2.20;ReadPosRankSum=-0.751;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:1,8:9:6:51,6,0 chrI 227469 . A G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=4.8702;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.742;QD=2.83;ReadPosRankSum=-0.742;SB=1.75 GT:AD:DP:GQ:PL 1/1:1,6:7:6:51,6,0 chrI 227471 . A T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.198;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=4.8702;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.495;QD=2.55;ReadPosRankSum=-1.495;SB=1.24 GT:AD:DP:GQ:PL 1/1:2,5:7:6:49,6,0 chrI 227638 . T C 81.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.495;DP=62;Dels=0.00;FS=6.557;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.45;MQ0=27;MQRankSum=0.727;QD=1.31;ReadPosRankSum=0.609;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:52,10:62:99:111,0,480 chrI 227665 . G A 312 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.13;MQ0=27;QD=7.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:39:345,39,0 chrI 227697 . C T 277 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.31;MQ0=4;QD=17.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:16:36:310,36,0 chrI 227698 . A G 115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.33;MQ0=3;MQRankSum=-0.244;QD=7.67;ReadPosRankSum=-2.793;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:6,9:15:66:145,0,66 chrI 227707 . A C 139.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.61;MQ0=3;QD=12.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:21:172,21,0 chrI 227846 . T C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.74;MQ0=2;MQRankSum=0.736;QD=2.11;ReadPosRankSum=0.736;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:1,7:8:6:48,6,0 chrI 227853 . G A 90.26 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.91;MQ0=2;QD=9.03;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:1,9:10:15:123,15,0 chrI 228173 . T C 3136 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.303;DP=197;Dels=0.00;FS=13.490;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=19.31;MQ0=64;MQRankSum=0.009;QD=15.92;ReadPosRankSum=2.413;SB=-3.801e+01 GT:AD:DP:GQ:PL 1/1:9,188:197:99:3169,362,0 chrI 228199 . C A 3507.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.7876;MLEAC=2;MLEAF=1.00;MQ=23.30;MQ0=28;MQRankSum=1.709;QD=20.04;ReadPosRankSum=-0.295;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3507,405,0 chrI 228232 . C T 466 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.61;MQ0=20;QD=11.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:57:499,57,0 chrI 228330 . T C 317 filter AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.05;MQ0=242;QD=1.20;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,264:265:42:350,42,0 chrI 228378 . C T 178.03 filter AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=7.01;MQ0=120;QD=1.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,126:128:24:211,24,0 chrI 228446 . G C 235 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.67;MQ0=22;QD=6.71;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,33:35:33:268,33,0 chrI 228476 . C T 196.01 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.21;MQ0=29;QD=4.90;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:5,34:40:27:229,27,0 chrI 228491 . G T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=9.21;MQ0=41;QD=0.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:45:6:54,6,0 chrI 228578 . C A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=17.21;MQ0=5;QD=1.98;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:49,6,0 chrI 228737 . C T 47.97 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.67;MQ0=19;QD=2.09;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:6,17:23:9:80,9,0 chrI 228756 . A G 40.97 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.83;MQ0=23;QD=1.14;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,28:36:9:73,9,0 chrI 228825 . G A 2034 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.778;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=25.57;MQ0=16;MQRankSum=1.839;QD=16.95;ReadPosRankSum=-0.896;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,114:120:99:2067,163,0 chrI 228936 . T C 73.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.16;MQ0=9;MQRankSum=0.747;QD=4.32;ReadPosRankSum=0.747;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,14:17:12:106,12,0 chrI 228958 . C T 74.51 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.18;MQ0=35;QD=1.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:12:107,12,0 chrI 229086 . C T 807 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=23.73;MQ0=5;QD=10.76;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:840,108,0 chrI 229092 . A G 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.150;DP=73;Dels=0.00;FS=15.689;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=23.81;MQ0=4;MQRankSum=0.895;QD=0.36;ReadPosRankSum=-0.389;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:55,18:73:56:56,0,564 chrI 229098 . C T 655 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.86;MQ0=3;QD=11.10;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:90:688,90,0 chrI 229099 . T A 364.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;DP=57;Dels=0.00;FS=12.594;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.97;MQ0=2;MQRankSum=-0.565;QD=6.39;ReadPosRankSum=-0.050;SB=-2.340e+02 GT:AD:DP:GQ:PL 0/1:13,44:57:44:394,0,44 chrI 229104 . C A 576 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.85;MQ0=2;QD=11.76;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:81:609,81,0 chrI 229185 . C T 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.36;MQ0=0;QD=5.50;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:65,9,0 chrI 229190 . G A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.15;MQ0=1;QD=4.71;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrI 229195 . T C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.15;MQ0=1;QD=4.71;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrI 229199 . C G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.15;MQ0=1;QD=4.71;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrI 229204 . C T 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.15;MQ0=1;QD=4.71;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrI 229212 . A G 32.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.15;MQ0=1;QD=4.71;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrI 229218 . C T 32.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.15;MQ0=1;QD=4.71;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrI 229224 . C G 32.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.15;MQ0=1;QD=4.71;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrI 229275 . T C 205 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.18;MQ0=1;QD=10.25;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:33:238,33,0 chrI 229279 . A C 184 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.60;MQ0=0;QD=9.68;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:30:217,30,0 chrI 229284 . C T 205 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.60;MQ0=0;QD=10.79;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:33:238,33,0 chrI 229293 . C T 227 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.62;MQ0=0;QD=11.35;SB=-8.563e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:36:260,36,0 chrI 229302 . A G 227 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.64;MQ0=0;QD=10.81;SB=-8.632e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:36:260,36,0 chrI 229329 . G C 227 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.64;MQ0=0;QD=10.81;SB=-8.632e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:36:260,36,0 chrI 229335 . T C 227 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.64;MQ0=0;QD=10.81;SB=-8.632e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:36:260,36,0 chrI 229345 . G T 162.01 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.58;MQ0=0;QD=9.00;SB=-2.163e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:27:195,27,0 chrI 230008 . A G 32.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.719;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=27.2396;MLEAC=1;MLEAF=0.500;MQ=24.70;MQ0=0;MQRankSum=2.198;QD=1.01;ReadPosRankSum=1.588;SB=-1.503e-01 GT:AD:DP:GQ:PL 0/1:8,24:32:10:62,0,10 chrII 102 . G A 46.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=19.83;MQ0=1;QD=5.87;SB=-3.072e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:79,9,0 chrII 103 . T C 44.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.183;DP=16;Dels=0.00;FS=21.553;HaplotypeScore=10.1289;MLEAC=2;MLEAF=1.00;MQ=25.50;MQ0=1;MQRankSum=-2.951;QD=2.81;ReadPosRankSum=3.183;SB=-2.872e+01 GT:AD:DP:GQ:PL 1/1:8,8:16:9:77,9,0 chrII 173 . A G 1671 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=55.7353;MLEAC=2;MLEAF=1.00;MQ=32.19;MQ0=1;QD=28.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1704,171,0 chrII 175 . G A 1509 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=162.3734;MLEAC=2;MLEAF=1.00;MQ=32.47;MQ0=0;QD=26.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1542,171,0 chrII 200 . T A 1308 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=29.77;MQ0=3;MQRankSum=-0.445;QD=19.52;ReadPosRankSum=1.683;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,63:67:99:1341,156,0 chrII 255 . C G 82.51 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.07;MQ0=3;QD=5.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:12:115,12,0 chrII 279 . T A 85.51 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.01;MQ0=2;QD=6.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:12:118,12,0 chrII 307 . T C 426 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.32;MQ0=0;QD=17.75;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:48:459,48,0 chrII 321 . T A 51.97 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;QD=1.48;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:9:84,9,0 chrII 383 . A T 395.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.708;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=1;MLEAF=0.500;MQ=25.19;MQ0=8;MQRankSum=-0.653;QD=5.72;ReadPosRankSum=1.576;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,37:69:99:425,0,280 chrII 401 . C T 116.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.73;MQ0=8;MQRankSum=2.020;QD=2.37;ReadPosRankSum=-0.845;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,19:49:99:146,0,287 chrII 408 . T C 230.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=23.10;MQ0=9;MQRankSum=-0.694;QD=4.89;ReadPosRankSum=0.913;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,28:47:99:260,0,114 chrII 465 . T C 53.97 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.96;MQ0=1;QD=9.00;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,5:6:9:86,9,0 chrII 490 . T C 53.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=1;QD=13.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:86,9,0 chrII 850 . G T 105.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.682;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=18.1396;MLEAC=1;MLEAF=0.500;MQ=9.54;MQ0=79;MQRankSum=-0.798;QD=0.39;ReadPosRankSum=-1.488;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:165,104:269:99:135,0,401 chrII 967 . G C 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=11.51;MQ0=23;MQRankSum=0.674;QD=0.07;ReadPosRankSum=1.221;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,49:169:41:41,0,136 chrII 1372 . G C 248 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.05;MQ0=49;QD=3.35;SB=-2.900e+01 GT:AD:DP:GQ:PL 1/1:0,57:74:30:281,30,0 chrII 1507 . G A 385 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.72;MQ0=24;QD=4.23;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,91:91:48:418,48,0 chrII 1528 . G A 106.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5465;MLEAC=1;MLEAF=0.500;MQ=20.85;MQ0=12;MQRankSum=1.324;QD=2.08;ReadPosRankSum=-0.167;SB=-6.533e-03 GT:AD:DP:GQ:PL 0/1:24,27:51:52:136,0,52 chrII 1531 . A T 75.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.651;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.5465;MLEAC=1;MLEAF=0.500;MQ=20.68;MQ0=9;MQRankSum=0.184;QD=1.70;ReadPosRankSum=0.847;SB=-6.525e-03 GT:AD:DP:GQ:PL 0/1:20,23:44:56:105,0,56 chrII 1532 . G T 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.863;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.5465;MLEAC=1;MLEAF=0.500;MQ=20.57;MQ0=8;MQRankSum=0.356;QD=0.85;ReadPosRankSum=1.516;SB=-6.521e-03 GT:AD:DP:GQ:PL 0/1:19,21:41:62:65,0,62 chrII 1534 . A G 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.452;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.5465;MLEAC=1;MLEAF=0.500;MQ=19.08;MQ0=10;MQRankSum=1.898;QD=0.63;ReadPosRankSum=2.598;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:30,19:49:61:61,0,64 chrII 1543 . G A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.1282;MLEAC=2;MLEAF=1.00;MQ=16.14;MQ0=8;QD=0.34;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,45:49:6:48,6,0 chrII 1596 . C T 1439 filter AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.7685;MLEAC=2;MLEAF=1.00;MQ=20.89;MQ0=31;QD=7.86;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,183:183:99:1472,162,0 chrII 1642 . A G 569.12 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.324;DP=148;Dels=0.00;FS=61.524;HaplotypeScore=41.6448;MLEAC=2;MLEAF=1.00;MQ=23.60;MQ0=15;MQRankSum=-4.254;QD=3.85;ReadPosRankSum=4.515;SB=0.875 GT:AD:DP:GQ:PL 1/1:69,79:148:5:600,5,0 chrII 1651 . C A 422.17 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.654;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=28.1638;MLEAC=2;MLEAF=1.00;MQ=22.89;MQ0=3;MQRankSum=1.137;QD=4.85;ReadPosRankSum=-2.153;SB=2.83 GT:AD:DP:GQ:PL 1/1:17,69:87:17:455,17,0 chrII 1655 . C T 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.910;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=13.5385;MLEAC=1;MLEAF=0.500;MQ=23.44;MQ0=2;MQRankSum=2.625;QD=0.43;ReadPosRankSum=4.466;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,32:79:64:64,0,309 chrII 1669 . G A 118.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.713;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.6451;MLEAC=1;MLEAF=0.500;MQ=24.81;MQ0=1;MQRankSum=1.974;QD=2.15;ReadPosRankSum=1.490;SB=-2.020e-02 GT:AD:DP:GQ:PL 0/1:18,37:55:22:148,0,22 chrII 1675 . A G 183.03 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=7.6451;MLEAC=2;MLEAF=1.00;MQ=25.04;MQ0=0;QD=3.39;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,53:54:24:216,24,0 chrII 1691 . T C 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.447;DP=78;Dels=0.00;FS=59.022;HaplotypeScore=14.1967;MLEAC=1;MLEAF=0.500;MQ=22.20;MQ0=5;MQRankSum=-5.644;QD=0.40;ReadPosRankSum=-1.529;SB=-1.400e+01 GT:AD:DP:GQ:PL 0/1:50,28:78:61:61,0,141 chrII 1697 . T C 153.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.762;DP=73;Dels=0.00;FS=71.526;HaplotypeScore=13.5316;MLEAC=1;MLEAF=0.500;MQ=20.96;MQ0=7;MQRankSum=3.895;QD=2.10;ReadPosRankSum=4.659;SB=3.664e-03 GT:AD:DP:GQ:PL 0/1:25,48:73:35:183,0,35 chrII 1704 . C T 249 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.9207;MLEAC=2;MLEAF=1.00;MQ=20.76;MQ0=7;QD=3.56;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:33:282,33,0 chrII 1722 . T C 72.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.832;DP=60;Dels=0.00;FS=32.123;HaplotypeScore=4.6641;MLEAC=1;MLEAF=0.500;MQ=19.39;MQ0=7;MQRankSum=4.630;QD=1.20;ReadPosRankSum=-3.709;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,22:60:99:102,0,106 chrII 1732 . G A 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.583;DP=58;Dels=0.00;FS=46.843;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.77;MQ0=8;MQRankSum=4.615;QD=0.90;ReadPosRankSum=-2.308;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,15:58:74:82,0,74 chrII 1785 . C T 12210.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=8.208;DP=805;Dels=0.00;FS=27.943;HaplotypeScore=68.1208;MLEAC=2;MLEAF=1.00;MQ=24.10;MQ0=52;MQRankSum=1.428;QD=15.17;ReadPosRankSum=10.750;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:74,731:805:99:12210,1173,0 chrII 1831 . A C 9327.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.220;DP=925;Dels=0.00;FS=274.498;HaplotypeScore=63.4724;MLEAC=1;MLEAF=0.500;MQ=24.49;MQ0=61;MQRankSum=-0.808;QD=10.08;ReadPosRankSum=-0.198;SB=-1.864e+03 GT:AD:DP:GQ:PL 0/1:213,711:925:99:9327,0,821 chrII 1835 . C T 608.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.709;DP=929;Dels=0.00;FS=94.988;HaplotypeScore=83.4552;MLEAC=1;MLEAF=0.500;MQ=24.51;MQ0=56;MQRankSum=0.846;QD=0.65;ReadPosRankSum=5.735;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:782,146:929:99:638,0,11140 chrII 1850 . G A 10072.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.101;DP=773;Dels=0.00;FS=216.525;HaplotypeScore=12.3905;MLEAC=2;MLEAF=1.00;MQ=24.30;MQ0=48;MQRankSum=5.706;QD=13.03;ReadPosRankSum=-7.696;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:113,657:773:99:10072,535,0 chrII 1867 . A C 1193.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.115;DP=368;Dels=0.00;FS=106.781;HaplotypeScore=171.5253;MLEAC=1;MLEAF=0.500;MQ=21.66;MQ0=35;MQRankSum=3.420;QD=3.24;ReadPosRankSum=-5.972;SB=-4.090e+02 GT:AD:DP:GQ:PL 0/1:159,94:368:99:1223,0,1068 chrII 1871 . C T 164.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.642;DP=319;Dels=0.00;FS=42.610;HaplotypeScore=138.1002;MLEAC=1;MLEAF=0.500;MQ=22.27;MQ0=31;MQRankSum=-4.252;QD=0.51;ReadPosRankSum=5.331;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:230,85:319:99:194,0,3148 chrII 1885 . G A 116.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;DP=145;Dels=0.00;FS=3.404;HaplotypeScore=20.3753;MLEAC=1;MLEAF=0.500;MQ=21.45;MQ0=13;MQRankSum=-3.891;QD=0.80;ReadPosRankSum=-1.426;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:96,49:145:99:146,0,1138 chrII 1886 . G A 274.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.964;DP=126;Dels=0.00;FS=66.744;HaplotypeScore=20.3753;MLEAC=1;MLEAF=0.500;MQ=20.06;MQ0=13;MQRankSum=-3.934;QD=2.17;ReadPosRankSum=-4.767;SB=-9.002e+01 GT:AD:DP:GQ:PL 0/1:63,62:126:99:304,0,585 chrII 1931 . T G 63.07 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=10.4022;MLEAC=1;MLEAF=0.500;MQ=20.93;MQ0=3;MQRankSum=-0.515;QD=1.50;ReadPosRankSum=-1.010;SB=-5.414e-01 GT:AD:DP:GQ:PL 0/1:11,31:42:15:93,0,15 chrII 2017 . A G 369 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.536;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=14.2736;MLEAC=2;MLEAF=1.00;MQ=19.71;MQ0=0;MQRankSum=2.435;QD=6.71;ReadPosRankSum=1.111;SB=-6.545e-03 GT:AD:DP:GQ:PL 1/1:12,43:55:51:402,51,0 chrII 2029 . G A 101.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.404;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=14.5428;MLEAC=1;MLEAF=0.500;MQ=18.81;MQ0=2;MQRankSum=1.702;QD=1.49;ReadPosRankSum=5.702;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,14:68:99:131,0,102 chrII 2035 . T A 66.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=16.4896;MLEAC=1;MLEAF=0.500;MQ=18.80;MQ0=2;MQRankSum=1.910;QD=0.84;ReadPosRankSum=5.799;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,14:79:96:96,0,189 chrII 2036 . T G 90.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=16.4896;MLEAC=1;MLEAF=0.500;MQ=19.00;MQ0=3;MQRankSum=1.372;QD=1.10;ReadPosRankSum=5.130;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,16:82:99:120,0,237 chrII 2039 . G T 65.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=33.5150;MLEAC=1;MLEAF=0.500;MQ=17.39;MQ0=9;MQRankSum=1.952;QD=0.52;ReadPosRankSum=6.051;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,14:126:95:95,0,399 chrII 2047 . C A 183.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.055;DP=170;Dels=0.00;FS=3.032;HaplotypeScore=31.0093;MLEAC=1;MLEAF=0.500;MQ=18.02;MQ0=16;MQRankSum=1.260;QD=1.08;ReadPosRankSum=5.321;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,77:170:99:213,0,502 chrII 2066 . A G 177.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.030;DP=302;Dels=0.00;FS=2.626;HaplotypeScore=32.9360;MLEAC=1;MLEAF=0.500;MQ=20.17;MQ0=24;MQRankSum=-2.088;QD=0.59;ReadPosRankSum=8.770;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:204,98:302:99:207,0,1699 chrII 2083 . A C,T 2234.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.916;DP=439;Dels=0.00;FS=0.000;HaplotypeScore=12.6667;MLEAC=1,1;MLEAF=0.500,0.500;MQ=20.61;MQ0=29;MQRankSum=4.735;QD=5.09;ReadPosRankSum=-1.742;SB=29.99 GT:AD:DP:GQ:PL 1/2:122,85,231:439:99:2294,1749,2130,146,0,326 chrII 2087 . T C 2186.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.375;DP=464;Dels=0.00;FS=0.000;HaplotypeScore=164.7185;MLEAC=1;MLEAF=0.500;MQ=20.67;MQ0=28;MQRankSum=4.372;QD=4.71;ReadPosRankSum=-0.508;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:212,252:464:99:2216,0,824 chrII 2119 . C A 3490.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=10.729;DP=451;Dels=0.00;FS=4.194;HaplotypeScore=14.0332;MLEAC=2;MLEAF=1.00;MQ=20.68;MQ0=42;MQRankSum=1.992;QD=7.74;ReadPosRankSum=8.163;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:64,387:451:99:3490,238,0 chrII 2138 . A G 2065.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.548;DP=359;Dels=0.00;FS=31.230;HaplotypeScore=9.5579;MLEAC=1;MLEAF=0.500;MQ=20.98;MQ0=31;MQRankSum=4.517;QD=5.75;ReadPosRankSum=3.617;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,217:359:99:2095,0,341 chrII 2164 . G C 895 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=137;Dels=0.00;FS=73.495;HaplotypeScore=18.4607;MLEAC=2;MLEAF=1.00;MQ=19.76;MQ0=18;MQRankSum=2.953;QD=6.53;ReadPosRankSum=-2.746;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:22,107:137:99:928,111,0 chrII 2168 . G A 357 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.729;DP=62;Dels=0.00;FS=61.370;HaplotypeScore=6.9966;MLEAC=2;MLEAF=1.00;MQ=15.95;MQ0=16;MQRankSum=3.600;QD=5.76;ReadPosRankSum=-3.635;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:21,41:62:48:390,48,0 chrII 2169 . A C 335 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.741;DP=62;Dels=0.00;FS=61.370;HaplotypeScore=6.9966;MLEAC=2;MLEAF=1.00;MQ=15.95;MQ0=16;MQRankSum=3.600;QD=5.40;ReadPosRankSum=-3.635;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:21,41:62:48:368,48,0 chrII 2173 . G A 18.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=15.95;MQ0=16;MQRankSum=0.636;QD=0.29;ReadPosRankSum=1.778;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,6:62:48:48,0,176 chrII 5831 . C A 159.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.56;MQ0=0;QD=4.97;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,32:32:24:192,24,0 chrII 5832 . A G 153.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.56;MQ0=0;QD=4.78;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,32:32:24:186,24,0 chrII 5841 . T G 159.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=19.56;MQ0=0;QD=4.97;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,32:32:24:192,24,0 chrII 5878 . T C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.960;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=167.8355;MLEAC=2;MLEAF=1.00;MQ=17.37;MQ0=0;MQRankSum=-0.926;QD=0.45;ReadPosRankSum=-1.296;SB=1.24 GT:AD:DP:GQ:PL 1/1:14,21:35:6:47,6,0 chrII 5898 . C A 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.480;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=69.2090;MLEAC=1;MLEAF=0.500;MQ=17.45;MQ0=0;MQRankSum=4.409;QD=0.38;ReadPosRankSum=-6.139;SB=-7.607e-03 GT:AD:DP:GQ:PL 0/1:61,61:122:33:76,0,33 chrII 5927 . T A,C 58.07 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.285;DP=139;Dels=0.00;FS=18.167;HaplotypeScore=50.2018;MLEAC=1,1;MLEAF=0.500,0.500;MQ=17.41;MQ0=1;MQRankSum=0.064;QD=0.42;ReadPosRankSum=-0.483;SB=-7.383e-02 GT:AD:DP:GQ:PL 1/2:27,64,48:139:47:118,62,53,56,0,47 chrII 5933 . T C 23.08 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.733;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=99.3846;MLEAC=1;MLEAF=0.500;MQ=17.64;MQ0=2;MQRankSum=-2.973;QD=0.15;ReadPosRankSum=2.618;SB=-7.443e+01 GT:AD:DP:GQ:PL 0/1:22,126:148:16:53,0,16 chrII 5969 . C T 96.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;DP=145;Dels=0.00;FS=14.377;HaplotypeScore=20.9564;MLEAC=1;MLEAF=0.500;MQ=17.88;MQ0=3;MQRankSum=-1.164;QD=0.66;ReadPosRankSum=-2.016;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,38:145:99:126,0,899 chrII 5989 . A C,T 1094.01 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=4.162;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.1224;MLEAC=1,1;MLEAF=0.500,0.500;MQ=18.46;MQ0=2;MQRankSum=3.289;QD=10.83;ReadPosRankSum=2.787;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/2:16,22,63:101:99:1154,900,880,238,0,111 chrII 6000 . T C 1235 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=16.93;MQ0=1;QD=16.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1268,173,0 chrII 6002 . A C 1247 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=16.93;MQ0=1;QD=16.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1280,173,0 chrII 6012 . C G 769.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.935;DP=74;Dels=0.00;FS=9.196;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=18.20;MQ0=0;MQRankSum=-1.149;QD=10.39;ReadPosRankSum=-0.787;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,48:74:99:799,0,157 chrII 6018 . C A 760.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.402;DP=74;Dels=0.00;FS=23.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.00;MQ0=0;MQRankSum=-2.212;QD=10.27;ReadPosRankSum=-2.392;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,47:74:99:790,0,221 chrII 6034 . G C 110.26 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=0;QD=8.48;SB=-1.431e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:15:143,15,0 chrII 6041 . T C 120.26 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=0;QD=10.02;SB=-1.241e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:15:153,15,0 chrII 6053 . C T 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.647;DP=27;Dels=0.00;FS=16.693;HaplotypeScore=19.8391;MLEAC=1;MLEAF=0.500;MQ=21.45;MQ0=1;MQRankSum=-2.751;QD=1.56;ReadPosRankSum=-3.166;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:15,12:27:72:72,0,147 chrII 6054 . C T 110.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;DP=28;Dels=0.00;FS=49.057;HaplotypeScore=19.8391;MLEAC=1;MLEAF=0.500;MQ=21.06;MQ0=2;MQRankSum=1.502;QD=3.93;ReadPosRankSum=1.291;SB=-2.376e+00 GT:AD:DP:GQ:PL 0/1:17,11:28:72:140,0,72 chrII 6069 . T C 464.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.321;DP=117;Dels=0.00;FS=74.169;HaplotypeScore=8.8107;MLEAC=1;MLEAF=0.500;MQ=17.25;MQ0=17;MQRankSum=3.265;QD=3.97;ReadPosRankSum=0.150;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:59,58:117:50:494,0,50 chrII 6070 . A T 467.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.727;DP=124;Dels=0.00;FS=31.678;HaplotypeScore=13.7217;MLEAC=1;MLEAF=0.500;MQ=17.28;MQ0=17;MQRankSum=3.897;QD=3.77;ReadPosRankSum=-1.683;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:54,69:124:50:497,0,50 chrII 6071 . C T 465.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.415;DP=140;Dels=0.00;FS=23.113;HaplotypeScore=8.7743;MLEAC=1;MLEAF=0.500;MQ=16.84;MQ0=18;MQRankSum=4.698;QD=3.32;ReadPosRankSum=-0.758;SB=-2.995e+00 GT:AD:DP:GQ:PL 0/1:64,76:140:50:495,0,50 chrII 6072 . T C 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;DP=158;Dels=0.00;FS=1.655;HaplotypeScore=14.0477;MLEAC=1;MLEAF=0.500;MQ=17.47;MQ0=20;MQRankSum=-4.677;QD=0.09;ReadPosRankSum=2.287;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:93,65:158:44:44,0,550 chrII 6116 . T A 2021 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.431;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=16.5316;MLEAC=2;MLEAF=1.00;MQ=16.04;MQ0=20;MQRankSum=-0.918;QD=7.24;ReadPosRankSum=2.354;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:2,276:279:99:2054,272,0 chrII 6120 . T C 500.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.282;DP=289;Dels=0.00;FS=122.748;HaplotypeScore=55.1142;MLEAC=1;MLEAF=0.500;MQ=16.14;MQ0=18;MQRankSum=0.771;QD=1.73;ReadPosRankSum=3.512;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:223,65:289:99:530,0,1178 chrII 6121 . A G 487.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.290;DP=289;Dels=0.00;FS=123.410;HaplotypeScore=52.1940;MLEAC=1;MLEAF=0.500;MQ=16.17;MQ0=17;MQRankSum=1.055;QD=1.69;ReadPosRankSum=3.674;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:224,65:289:99:517,0,1189 chrII 6148 . T C 223.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.491;DP=290;Dels=0.00;FS=16.120;HaplotypeScore=97.2032;MLEAC=1;MLEAF=0.500;MQ=16.52;MQ0=16;MQRankSum=1.911;QD=0.77;ReadPosRankSum=-7.036;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:208,80:290:99:253,0,1716 chrII 6155 . C T 576.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.784;DP=272;Dels=0.01;FS=95.360;HaplotypeScore=153.0199;MLEAC=1;MLEAF=0.500;MQ=16.71;MQ0=11;MQRankSum=3.151;QD=2.12;ReadPosRankSum=8.161;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:198,70:269:99:606,0,1195 chrII 6160 . A G 377.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.190;DP=248;Dels=0.00;FS=157.201;HaplotypeScore=88.6496;MLEAC=1;MLEAF=0.500;MQ=16.95;MQ0=6;MQRankSum=2.646;QD=1.52;ReadPosRankSum=-2.349;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:215,33:248:99:407,0,1224 chrII 6175 . T C 850 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.203;DP=105;Dels=0.00;FS=4.518;HaplotypeScore=87.9816;MLEAC=2;MLEAF=1.00;MQ=17.28;MQ0=3;MQRankSum=-1.045;QD=8.10;ReadPosRankSum=-0.743;SB=-1.658e+02 GT:AD:DP:GQ:PL 1/1:10,81:105:99:883,113,0 chrII 6177 . A G 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;DP=92;Dels=0.00;FS=6.837;HaplotypeScore=70.6644;MLEAC=1;MLEAF=0.500;MQ=17.06;MQ0=2;MQRankSum=2.261;QD=0.12;ReadPosRankSum=0.907;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,13:92:41:41,0,582 chrII 6183 . C T 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=77.834;HaplotypeScore=71.9509;MLEAC=1;MLEAF=0.500;MQ=18.63;MQ0=2;MQRankSum=2.026;QD=0.56;ReadPosRankSum=2.829;SB=-2.881e+00 GT:AD:DP:GQ:PL 0/1:67,11:78:74:74,0,582 chrII 6184 . C T 429.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520;DP=78;Dels=0.00;FS=34.796;HaplotypeScore=71.9509;MLEAC=1;MLEAF=0.500;MQ=18.53;MQ0=3;MQRankSum=-2.254;QD=5.50;ReadPosRankSum=0.518;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,49:78:99:459,0,130 chrII 6200 . T C 489.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;DP=81;Dels=0.00;FS=37.374;HaplotypeScore=19.6218;MLEAC=1;MLEAF=0.500;MQ=19.15;MQ0=3;MQRankSum=-1.499;QD=6.04;ReadPosRankSum=-0.631;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,49:81:99:519,0,127 chrII 6208 . T C 340.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;DP=74;Dels=0.00;FS=36.476;HaplotypeScore=18.0042;MLEAC=1;MLEAF=0.500;MQ=19.34;MQ0=3;MQRankSum=-0.914;QD=4.59;ReadPosRankSum=-0.579;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,35:74:99:370,0,170 chrII 6228 . C A,G 348.52 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.6119;MLEAC=1,1;MLEAF=0.500,0.500;MQ=20.31;MQ0=1;QD=7.74;SB=-1.475e+02 GT:AD:DP:GQ:PL 1/2:0,12,27:45:36:408,325,313,84,0,36 chrII 6302 . A G 247 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=30.8052;MLEAC=2;MLEAF=1.00;MQ=16.15;MQ0=3;QD=3.48;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:36:280,36,0 chrII 6335 . C T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.682;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=25.8099;MLEAC=1;MLEAF=0.500;MQ=16.21;MQ0=4;MQRankSum=-3.920;QD=0.23;ReadPosRankSum=0.976;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,56:94:52:52,0,203 chrII 6379 . A T 158.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=9.8517;MLEAC=2;MLEAF=1.00;MQ=16.30;MQ0=1;MQRankSum=-1.168;QD=3.59;ReadPosRankSum=1.652;SB=-4.095e-02 GT:AD:DP:GQ:PL 1/1:1,43:44:24:191,24,0 chrII 6388 . C A 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.185;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=17.33;MQ0=1;MQRankSum=1.173;QD=0.88;ReadPosRankSum=1.006;SB=-6.521e-03 GT:AD:DP:GQ:PL 0/1:26,15:41:60:66,0,60 chrII 6395 . C A 58.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.664;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=4.5552;MLEAC=1;MLEAF=0.500;MQ=18.25;MQ0=1;MQRankSum=-0.456;QD=1.81;ReadPosRankSum=1.092;SB=-6.606e-03 GT:AD:DP:GQ:PL 0/1:14,18:32:44:88,0,44 chrII 6396 . T G 138.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=4.5552;MLEAC=2;MLEAF=1.00;MQ=18.33;MQ0=1;QD=4.60;SB=-7.490e-02 GT:AD:DP:GQ:PL 1/1:0,30:30:21:171,21,0 chrII 6401 . C T 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=4.5552;MLEAC=1;MLEAF=0.500;MQ=17.42;MQ0=1;MQRankSum=0.795;QD=1.77;ReadPosRankSum=0.541;SB=0.027 GT:AD:DP:GQ:PL 0/1:6,20:26:33:76,0,33 chrII 6439 . G A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=0;MQRankSum=0.000;QD=4.71;ReadPosRankSum=1.026;SB=1.24 GT:AD:DP:GQ:PL 1/1:2,2:4:6:50,6,0 chrII 6440 . G C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=0;QD=5.20;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:52,6,0 chrII 6462 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.10;MQ0=0;MQRankSum=0.736;QD=7.26;ReadPosRankSum=0.736;SB=1.25 GT:AD:DP:GQ:PL 1/1:1,2:3:6:53,6,0 chrII 6699 . A T 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=17.88;MQ0=5;QD=0.33;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,42:42:6:45,6,0 chrII 6704 . T A 39.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=18.09;MQ0=5;MQRankSum=-1.733;QD=0.83;ReadPosRankSum=1.652;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,47:48:9:72,9,0 chrII 6713 . A T 68.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.197;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.5521;MLEAC=2;MLEAF=1.00;MQ=18.70;MQ0=5;MQRankSum=1.505;QD=1.34;ReadPosRankSum=3.981;SB=2.51 GT:AD:DP:GQ:PL 1/1:10,41:51:12:101,12,0 chrII 6740 . T C 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.418;DP=75;Dels=0.00;FS=7.718;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.43;MQ0=9;MQRankSum=4.337;QD=0.36;ReadPosRankSum=-1.762;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,21:75:57:57,0,245 chrII 6754 . A C,T 409.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=17.6780;MLEAC=1,1;MLEAF=0.500,0.500;MQ=22.52;MQ0=6;QD=5.18;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/2:0,55,24:79:99:469,168,132,301,0,274 chrII 6755 . T C 236.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;DP=81;Dels=0.00;FS=28.165;HaplotypeScore=40.6734;MLEAC=1;MLEAF=0.500;MQ=22.55;MQ0=6;MQRankSum=2.066;QD=2.91;ReadPosRankSum=0.576;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,55:81:99:266,0,132 chrII 6766 . A C 515 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.76;MQ0=4;QD=6.44;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:66:548,66,0 chrII 6769 . C T 512 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=21.5109;MLEAC=2;MLEAF=1.00;MQ=23.90;MQ0=4;QD=6.24;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:66:545,66,0 chrII 6774 . C T 523 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=53.8414;MLEAC=2;MLEAF=1.00;MQ=23.88;MQ0=4;QD=5.88;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:66:556,66,0 chrII 6777 . T C 96.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.489;DP=89;Dels=0.00;FS=48.513;HaplotypeScore=86.0694;MLEAC=1;MLEAF=0.500;MQ=23.88;MQ0=4;MQRankSum=-3.908;QD=1.08;ReadPosRankSum=3.961;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:74,15:89:99:126,0,323 chrII 6784 . T A 185.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.876;DP=84;Dels=0.00;FS=17.416;HaplotypeScore=61.4689;MLEAC=1;MLEAF=0.500;MQ=24.23;MQ0=4;MQRankSum=5.761;QD=2.20;ReadPosRankSum=1.428;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,43:84:99:215,0,231 chrII 6786 . A G 198.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.164;DP=74;Dels=0.00;FS=25.559;HaplotypeScore=62.4000;MLEAC=1;MLEAF=0.500;MQ=24.75;MQ0=4;MQRankSum=4.664;QD=2.68;ReadPosRankSum=-1.888;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,47:74:99:228,0,135 chrII 6787 . A C 213.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;DP=77;Dels=0.00;FS=44.183;HaplotypeScore=64.7660;MLEAC=1;MLEAF=0.500;MQ=24.82;MQ0=4;MQRankSum=3.615;QD=2.77;ReadPosRankSum=-0.468;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:15,59:77:99:243,0,135 chrII 6796 . C G 288.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.502;DP=97;Dels=0.00;FS=50.029;HaplotypeScore=27.9222;MLEAC=1;MLEAF=0.500;MQ=24.40;MQ0=4;MQRankSum=3.671;QD=2.97;ReadPosRankSum=0.542;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:15,80:97:99:318,0,123 chrII 6799 . T G 162.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.763;DP=98;Dels=0.00;FS=16.525;HaplotypeScore=15.4394;MLEAC=1;MLEAF=0.500;MQ=25.02;MQ0=4;MQRankSum=5.684;QD=1.65;ReadPosRankSum=3.088;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,49:98:99:192,0,286 chrII 6841 . T A 614 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=0;QD=5.20;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:0,117:118:69:647,69,0 chrII 6848 . T C 373.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DP=114;Dels=0.00;FS=12.466;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=21.09;MQ0=0;MQRankSum=3.484;QD=3.27;ReadPosRankSum=0.810;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:82,32:114:85:403,0,85 chrII 6871 . A T 357.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.739;DP=138;Dels=0.00;FS=35.627;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.71;MQ0=8;MQRankSum=4.809;QD=2.59;ReadPosRankSum=-0.490;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:113,25:138:99:387,0,509 chrII 6916 . C G 434.27 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;DP=73;Dels=0.00;FS=39.061;HaplotypeScore=10.7610;MLEAC=1;MLEAF=0.500;MQ=17.05;MQ0=8;MQRankSum=2.979;QD=5.95;ReadPosRankSum=6.568;SB=-3.275e+00 GT:AD:DP:GQ:PL 0/1:26,47:73:9:464,0,9 chrII 6918 . A G 434.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;DP=71;Dels=0.00;FS=32.350;HaplotypeScore=10.7610;MLEAC=1;MLEAF=0.500;MQ=17.11;MQ0=8;MQRankSum=2.838;QD=6.12;ReadPosRankSum=6.390;SB=-3.211e+00 GT:AD:DP:GQ:PL 0/1:24,47:71:10:464,0,10 chrII 6921 . G C 610 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.6448;MLEAC=2;MLEAF=1.00;MQ=17.84;MQ0=8;QD=10.17;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,59:60:84:643,84,0 chrII 6939 . T G 135.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.906;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.21;MQ0=9;MQRankSum=2.204;QD=1.80;ReadPosRankSum=-4.964;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,14:75:99:165,0,639 chrII 6958 . A G 1428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=19.4496;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=3;MQRankSum=-0.474;QD=14.87;ReadPosRankSum=3.262;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:5,89:96:99:1461,168,0 chrII 6965 . T C 1416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.077;DP=88;Dels=0.00;FS=6.704;HaplotypeScore=9.6721;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=1;MQRankSum=-1.433;QD=16.09;ReadPosRankSum=0.847;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:2,79:88:99:1449,168,0 chrII 7006 . C G 2630 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.57;MQ0=0;QD=19.48;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2663,297,0 chrII 7010 . A G 568.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.754;DP=141;Dels=0.00;FS=19.540;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.11;MQ0=1;MQRankSum=1.596;QD=4.03;ReadPosRankSum=1.524;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,44:141:99:598,0,1488 chrII 7061 . T C 267.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;DP=83;Dels=0.00;FS=5.683;HaplotypeScore=12.3539;MLEAC=1;MLEAF=0.500;MQ=24.40;MQ0=1;MQRankSum=-4.599;QD=3.22;ReadPosRankSum=1.482;SB=-8.400e+01 GT:AD:DP:GQ:PL 0/1:24,57:83:99:297,0,321 chrII 7066 . T G 260.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.542;DP=72;Dels=0.00;FS=9.252;HaplotypeScore=38.7638;MLEAC=1;MLEAF=0.500;MQ=22.96;MQ0=1;MQRankSum=-3.819;QD=3.61;ReadPosRankSum=0.909;SB=-7.501e+01 GT:AD:DP:GQ:PL 0/1:18,54:72:99:290,0,217 chrII 7072 . A G 111.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;DP=65;Dels=0.00;FS=13.464;HaplotypeScore=16.6331;MLEAC=1;MLEAF=0.500;MQ=22.08;MQ0=1;MQRankSum=-5.753;QD=1.71;ReadPosRankSum=1.342;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/1:27,38:65:99:141,0,197 chrII 7075 . A G 287 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.866;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=15.6848;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=1;MQRankSum=-0.742;QD=5.12;ReadPosRankSum=2.316;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:39:320,39,0 chrII 7085 . C T 84.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;DP=45;Dels=0.00;FS=103.894;HaplotypeScore=4.6816;MLEAC=1;MLEAF=0.500;MQ=20.16;MQ0=1;MQRankSum=5.428;QD=1.87;ReadPosRankSum=-1.061;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:28,17:45:67:114,0,67 chrII 7116 . C G 236 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.17;MQ0=0;QD=7.15;SB=-4.302e+01 GT:AD:DP:GQ:PL 1/1:0,30:33:30:269,30,0 chrII 7125 . C A 241 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=33;Dels=0.00;FS=8.432;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.69;MQ0=0;MQRankSum=2.134;QD=7.30;ReadPosRankSum=1.080;SB=-4.302e+01 GT:AD:DP:GQ:PL 1/1:5,28:33:30:274,30,0 chrII 7129 . A C 232 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=6.82;SB=-4.302e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:30:265,30,0 chrII 7133 . T G 243 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.51;MQ0=0;QD=7.84;SB=-4.902e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:30:276,30,0 chrII 7138 . C A 206.01 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.98;MQ0=0;QD=7.10;SB=-5.202e+01 GT:AD:DP:GQ:PL 1/1:0,19:29:27:239,27,0 chrII 7139 . T A 237.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=31;Dels=0.00;FS=8.572;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.41;MQ0=0;MQRankSum=4.238;QD=7.65;ReadPosRankSum=1.561;SB=-5.102e+01 GT:AD:DP:GQ:PL 1/1:12,19:31:27:270,27,0 chrII 7150 . G C 306 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=23.62;MQ0=0;QD=9.27;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,21:33:36:339,36,0 chrII 7167 . A G 284 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.41;MQ0=0;QD=10.52;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:33:317,33,0 chrII 7172 . C T 233 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.79;MQ0=0;QD=9.32;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:30:266,30,0 chrII 7174 . A T 232 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.617;DP=25;Dels=0.00;FS=46.948;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.79;MQ0=0;MQRankSum=4.215;QD=9.28;ReadPosRankSum=-2.801;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:12,13:25:30:265,30,0 chrII 7183 . T C 226.01 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.29;MQ0=0;QD=10.27;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:259,27,0 chrII 7186 . G A 217.01 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.29;MQ0=0;QD=9.86;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:250,27,0 chrII 7199 . T C 212.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.016;DP=24;Dels=0.00;FS=62.925;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=20.61;MQ0=0;MQRankSum=2.898;QD=8.83;ReadPosRankSum=2.196;SB=-2.163e-02 GT:AD:DP:GQ:PL 1/1:10,14:24:27:245,27,0 chrII 7201 . A G 217.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=20.61;MQ0=0;QD=9.04;SB=-2.163e-02 GT:AD:DP:GQ:PL 1/1:0,24:24:27:250,27,0 chrII 7209 . A G 231 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.656;DP=28;Dels=0.00;FS=58.393;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=21.09;MQ0=0;MQRankSum=3.296;QD=8.25;ReadPosRankSum=2.509;SB=-1.506e-02 GT:AD:DP:GQ:PL 1/1:9,19:28:30:264,30,0 chrII 7224 . C T 239 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.058;DP=26;Dels=0.00;FS=34.757;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=22.31;MQ0=0;MQRankSum=1.496;QD=9.19;ReadPosRankSum=2.537;SB=2.100e-03 GT:AD:DP:GQ:PL 1/1:5,21:26:30:272,30,0 chrII 7247 . C T 121.13 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.84;MQ0=0;QD=6.73;SB=-1.415e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:18:154,18,0 chrII 7254 . T C 58.51 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.59;MQ0=0;QD=3.66;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:91,12,0 chrII 7291 . C G 374 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.910;DP=35;Dels=0.03;FS=18.126;HaplotypeScore=15.5180;MLEAC=2;MLEAF=1.00;MQ=24.60;MQ0=1;MQRankSum=2.890;QD=10.69;ReadPosRankSum=0.707;SB=-6.311e-03 GT:AD:DP:GQ:PL 1/1:9,25:34:48:407,48,0 chrII 7293 . G A 416 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=35;Dels=0.03;FS=18.126;HaplotypeScore=14.5313;MLEAC=2;MLEAF=1.00;MQ=24.60;MQ0=1;MQRankSum=3.416;QD=11.89;ReadPosRankSum=0.546;SB=-6.382e-03 GT:AD:DP:GQ:PL 1/1:9,25:34:48:449,48,0 chrII 7298 . T A 416 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.945;DP=34;Dels=0.00;FS=19.887;HaplotypeScore=4.8594;MLEAC=2;MLEAF=1.00;MQ=24.46;MQ0=1;MQRankSum=3.550;QD=12.24;ReadPosRankSum=0.063;SB=-6.382e-03 GT:AD:DP:GQ:PL 1/1:8,26:34:48:449,48,0 chrII 7372 . G A 82.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.112;DP=27;Dels=0.00;FS=36.971;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.48;MQ0=1;MQRankSum=3.935;QD=3.05;ReadPosRankSum=-0.077;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:15,12:27:15:115,15,0 chrII 7374 . T C 83.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.495;DP=27;Dels=0.00;FS=36.971;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.48;MQ0=1;MQRankSum=3.678;QD=3.08;ReadPosRankSum=1.003;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:15,12:27:15:116,15,0 chrII 7393 . G T 82.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.578;DP=29;Dels=0.00;FS=49.305;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=18.14;MQ0=1;MQRankSum=4.219;QD=2.84;ReadPosRankSum=2.492;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:12,16:29:15:115,15,0 chrII 7396 . T C 83.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=27;Dels=0.00;FS=47.788;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=19.33;MQ0=1;MQRankSum=3.699;QD=3.08;ReadPosRankSum=2.709;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:10,17:27:15:116,15,0 chrII 7402 . A G 82.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.746;DP=22;Dels=0.00;FS=37.771;HaplotypeScore=2.4637;MLEAC=2;MLEAF=1.00;MQ=20.87;MQ0=1;MQRankSum=2.642;QD=3.74;ReadPosRankSum=2.821;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:5,17:22:15:115,15,0 chrII 7403 . C G 82.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.793;DP=20;Dels=0.00;FS=22.330;HaplotypeScore=10.4663;MLEAC=2;MLEAF=1.00;MQ=21.66;MQ0=1;MQRankSum=2.059;QD=4.11;ReadPosRankSum=1.926;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:3,17:20:15:115,15,0 chrII 7405 . A G 83.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.793;DP=20;Dels=0.00;FS=22.330;HaplotypeScore=8.6838;MLEAC=2;MLEAF=1.00;MQ=21.66;MQ0=1;MQRankSum=2.059;QD=4.16;ReadPosRankSum=2.059;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:3,17:20:15:116,15,0 chrII 7432 . C T 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.30;MQ0=1;MQRankSum=-0.452;QD=0.95;ReadPosRankSum=-1.055;SB=-6.525e-03 GT:AD:DP:GQ:PL 0/1:12,6:18:47:47,0,56 chrII 7436 . G A 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.261;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.30;MQ0=1;MQRankSum=-1.457;QD=0.95;ReadPosRankSum=-1.558;SB=-6.524e-03 GT:AD:DP:GQ:PL 0/1:12,6:18:47:47,0,57 chrII 7653 . G A 615.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.314;DP=112;Dels=0.00;FS=10.226;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=22.94;MQ0=34;MQRankSum=0.985;QD=5.49;ReadPosRankSum=-1.834;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:69,43:112:99:645,0,679 chrII 7776 . G A 365.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.091;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.8833;MLEAC=1;MLEAF=0.500;MQ=17.94;MQ0=80;MQRankSum=2.753;QD=2.34;ReadPosRankSum=1.647;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:125,31:156:99:395,0,653 chrII 7785 . G T 717.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DP=162;Dels=0.00;FS=3.846;HaplotypeScore=3.3326;MLEAC=1;MLEAF=0.500;MQ=18.78;MQ0=80;MQRankSum=0.596;QD=4.43;ReadPosRankSum=0.811;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,65:162:99:747,0,530 chrII 7814 . T A 770.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=1;MLEAF=0.500;MQ=20.11;MQ0=71;MQRankSum=1.857;QD=4.45;ReadPosRankSum=-0.244;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,66:173:99:800,0,640 chrII 7818 . G A 726.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.514;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=1;MLEAF=0.500;MQ=20.04;MQ0=70;MQRankSum=1.910;QD=4.27;ReadPosRankSum=-0.374;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,64:170:99:756,0,622 chrII 7830 . G A 548.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.258;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=19.35;MQ0=61;MQRankSum=1.080;QD=3.78;ReadPosRankSum=-1.261;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,52:145:99:578,0,518 chrII 7845 . A G 424.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=20.25;MQ0=44;MQRankSum=1.526;QD=3.75;ReadPosRankSum=-0.078;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,39:113:99:454,0,445 chrII 7860 . C T 218.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=20.17;MQ0=28;MQRankSum=2.141;QD=2.87;ReadPosRankSum=-0.748;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,29:76:99:248,0,248 chrII 7866 . C A 549 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=20.52;MQ0=16;QD=10.17;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:66:582,66,0 chrII 8161 . C G 357 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.501;DP=60;Dels=0.00;FS=89.842;HaplotypeScore=39.3832;MLEAC=2;MLEAF=1.00;MQ=23.08;MQ0=5;MQRankSum=5.433;QD=5.95;ReadPosRankSum=-3.241;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:20,40:60:42:390,42,0 chrII 8174 . T A 368 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.9007;MLEAC=2;MLEAF=1.00;MQ=23.90;MQ0=9;MQRankSum=0.750;QD=4.54;ReadPosRankSum=-1.192;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:7,74:81:42:401,42,0 chrII 8180 . G A 437 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.637;DP=89;Dels=0.00;FS=109.072;HaplotypeScore=7.0686;MLEAC=2;MLEAF=1.00;MQ=23.82;MQ0=12;MQRankSum=5.820;QD=4.91;ReadPosRankSum=-1.743;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:27,62:89:48:470,48,0 chrII 8186 . C T 425 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=91;Dels=0.00;FS=102.638;HaplotypeScore=3.5979;MLEAC=2;MLEAF=1.00;MQ=23.87;MQ0=14;MQRankSum=5.659;QD=4.67;ReadPosRankSum=-0.759;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:23,63:91:48:458,48,0 chrII 8187 . T C 413 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.799;DP=92;Dels=0.00;FS=90.398;HaplotypeScore=3.5979;MLEAC=2;MLEAF=1.00;MQ=23.84;MQ0=14;MQRankSum=5.620;QD=4.49;ReadPosRankSum=-0.561;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:24,68:92:48:446,48,0 chrII 8216 . C G 574 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.081;DP=114;Dels=0.00;FS=2.969;HaplotypeScore=3.6622;MLEAC=2;MLEAF=1.00;MQ=22.38;MQ0=21;MQRankSum=4.322;QD=5.04;ReadPosRankSum=3.479;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:22,92:114:69:607,69,0 chrII 8221 . G A 559 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=105;Dels=0.00;FS=6.292;HaplotypeScore=3.6622;MLEAC=2;MLEAF=1.00;MQ=22.70;MQ0=21;MQRankSum=4.236;QD=5.32;ReadPosRankSum=2.565;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:15,89:105:66:592,66,0 chrII 8222 . T C 569 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.428;DP=105;Dels=0.00;FS=6.340;HaplotypeScore=3.6622;MLEAC=2;MLEAF=1.00;MQ=22.70;MQ0=21;MQRankSum=4.240;QD=5.42;ReadPosRankSum=2.185;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:15,90:105:69:602,69,0 chrII 8238 . T C 413 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.96;MQ0=19;QD=4.44;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:2,91:93:51:446,51,0 chrII 8250 . A G 211 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.488;DP=79;Dels=0.00;FS=9.542;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=16;MQRankSum=4.276;QD=2.67;ReadPosRankSum=-4.123;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:23,56:79:30:244,30,0 chrII 8253 . C T 206 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.979;DP=81;Dels=0.00;FS=9.678;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.62;MQ0=16;MQRankSum=4.285;QD=2.54;ReadPosRankSum=-4.095;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:23,58:81:30:239,30,0 chrII 8280 . G A 54.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.051;DP=53;Dels=0.00;FS=8.081;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.91;MQ0=8;MQRankSum=4.149;QD=1.04;ReadPosRankSum=0.579;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:12,41:53:9:87,9,0 chrII 8281 . G C 50.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.458;DP=52;Dels=0.00;FS=8.081;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=25.14;MQ0=7;MQRankSum=4.149;QD=0.98;ReadPosRankSum=0.861;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:14,38:52:9:83,9,0 chrII 8283 . A G 53.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.490;DP=52;Dels=0.00;FS=8.081;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=25.14;MQ0=7;MQRankSum=4.149;QD=1.04;ReadPosRankSum=2.083;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:14,38:52:9:86,9,0 chrII 8288 . T A 58.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.676;DP=55;Dels=0.00;FS=7.076;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=4;MQRankSum=3.001;QD=1.07;ReadPosRankSum=3.760;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:10,45:55:9:91,9,0 chrII 8315 . G A 80.26 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=1.71;SB=-2.227e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:15:113,15,0 chrII 8316 . A T 81.26 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=1.69;SB=-5.127e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:15:114,15,0 chrII 8317 . A G 81.26 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=1.69;SB=-4.927e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:15:114,15,0 chrII 8328 . G C 335 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.30;MQ0=0;QD=4.41;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:39:368,39,0 chrII 8331 . C T 556 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=30.74;MQ0=0;QD=6.70;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:63:589,63,0 chrII 8423 . G A 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.045;DP=176;Dels=0.00;FS=15.565;HaplotypeScore=55.6038;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;MQRankSum=3.802;QD=23.10;ReadPosRankSum=0.540;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:5,171:176:99:4065,426,0 chrII 8501 . G A 4388.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=17.0734;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=24.38;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4388,477,0 chrII 9432 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.31;MQ0=0;QD=0.40;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,50:50:6:51,6,0 chrII 9541 . T C 702 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=15.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:78:735,78,0 chrII 9555 . G T 737 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=15.35;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:81:770,81,0 chrII 9560 . C T 854 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;QD=16.11;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:93:887,93,0 chrII 9679 . A G 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.7414;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=1.699;QD=19.92;ReadPosRankSum=1.699;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,103:106:99:2145,228,0 chrII 9688 . C G 2381 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=22.46;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2414,252,0 chrII 9832 . T G 3537.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=24.91;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3537,390,0 chrII 9859 . T G 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=128;Dels=0.00;FS=3.027;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=0.682;QD=22.77;ReadPosRankSum=2.258;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2947,321,0 chrII 9932 . T C 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=129;Dels=0.00;FS=2.968;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.391;QD=24.77;ReadPosRankSum=2.412;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3228,342,0 chrII 10136 . G T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.34;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3328,345,0 chrII 10210 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.84;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2819,300,0 chrII 10401 . G A 3410.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=23.20;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3410,352,0 chrII 10425 . A G 3478.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=24.15;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3478,363,0 chrII 10572 . T C 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=141;Dels=0.00;FS=4.528;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=-0.262;QD=24.32;ReadPosRankSum=1.682;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:3429,366,0 chrII 10621 . C T 2916 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=22.60;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2949,301,0 chrII 10627 . G A 2889 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=20.06;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:2922,300,0 chrII 10674 . A C 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;MQRankSum=0.122;QD=19.64;ReadPosRankSum=1.708;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2822,297,0 chrII 10708 . C T 2211 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=108.2871;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=17.27;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2244,231,0 chrII 10783 . G A 1765 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;QD=15.90;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1798,186,0 chrII 10795 . T A 1788 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=16.25;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1821,195,0 chrII 10801 . G T 2030 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=17.65;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2063,213,0 chrII 10943 . G A 4829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-0.577;QD=25.15;ReadPosRankSum=-1.365;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4829,525,0 chrII 11039 . A G 4863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=199;Dels=0.00;FS=4.216;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=1.102;QD=24.44;ReadPosRankSum=1.697;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4863,537,0 chrII 11072 . T C 5427.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=24.56;SB=-2.915e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5427,577,0 chrII 11360 . T A 2330 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=19.75;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2363,246,0 chrII 11361 . G C 2329 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=19.74;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2362,249,0 chrII 11435 . G A 3197 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.7308;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.51;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3230,333,0 chrII 11470 . T C 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=153;Dels=0.00;FS=6.087;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.768;QD=23.39;ReadPosRankSum=2.914;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:3579,378,0 chrII 11545 . T C 4505.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.1915;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=24.62;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4505,483,0 chrII 11687 . T C 3728.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.30;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3728,402,0 chrII 11738 . G A 3925.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.9022;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.43;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3925,412,0 chrII 11749 . T C 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=167;Dels=0.00;FS=7.737;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=0.320;QD=22.43;ReadPosRankSum=2.405;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:2,163:167:99:3745,393,0 chrII 11855 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3708,388,0 chrII 11963 . C A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.2786;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.82;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3475,358,0 chrII 12007 . A G 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=145;Dels=0.00;FS=3.814;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.513;QD=23.93;ReadPosRankSum=1.708;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,141:145:99:3470,366,0 chrII 12122 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=3.834;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.364;QD=23.09;ReadPosRankSum=1.689;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3786,399,0 chrII 12208 . G A 3895.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.61;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3895,403,0 chrII 12485 . T C 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=163;Dels=0.00;FS=8.108;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.206;QD=22.88;ReadPosRankSum=2.389;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3730,391,0 chrII 12511 . A G 3915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.350;QD=23.73;ReadPosRankSum=1.520;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3915,420,0 chrII 12728 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.01;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3721,393,0 chrII 12839 . T C 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.0113;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.566;QD=22.45;ReadPosRankSum=1.708;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3277,357,0 chrII 13061 . G T 3910.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.23;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3910,403,0 chrII 13169 . A C 2629 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=23.47;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2662,291,0 chrII 13184 . T C 2541 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=21.72;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2574,273,0 chrII 13189 . T C 2607 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=22.67;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2640,279,0 chrII 13217 . C T 2818 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.29;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2851,291,0 chrII 13313 . G A 3979.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3979,420,0 chrII 13609 . G T 3809.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3809,400,0 chrII 14043 . C G 2297 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.18;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2330,249,0 chrII 14472 . G A 4227.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.16;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4227,439,0 chrII 14541 . T A 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=147;Dels=0.00;FS=2.951;HaplotypeScore=17.8760;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.042;QD=20.18;ReadPosRankSum=2.383;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3000,309,0 chrII 14661 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3145,345,0 chrII 14967 . A G 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=96;Dels=0.00;FS=3.104;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.106;QD=22.56;ReadPosRankSum=1.548;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,93:96:99:2199,243,0 chrII 15162 . A G 3966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=4.161;HaplotypeScore=8.3010;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.383;QD=24.63;ReadPosRankSum=1.645;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3966,429,0 chrII 15222 . T A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=24.54;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3338,346,0 chrII 15234 . T C 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=139;Dels=0.00;FS=2.708;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.186;QD=21.65;ReadPosRankSum=2.379;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3042,324,0 chrII 15510 . G T 4308.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.90;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4308,445,0 chrII 15830 . A G 4089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.01;FS=3.300;HaplotypeScore=8.4701;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-0.689;QD=21.75;ReadPosRankSum=1.713;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4089,430,0 chrII 15835 . C T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.2391;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.07;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4060,418,0 chrII 15880 . C T 4523.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.45;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4523,463,0 chrII 16530 . C T 4262.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.37;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4262,439,0 chrII 16749 . G A 4325.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=9.0182;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.00;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4325,445,0 chrII 17571 . C T 3184 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.24;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3217,334,0 chrII 18082 . A T 4652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=205;Dels=0.00;FS=3.017;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.395;QD=22.69;ReadPosRankSum=2.401;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4652,495,0 chrII 18175 . T C 6643.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=12.5902;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.05;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:6643,706,0 chrII 18513 . A G 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=153;Dels=0.00;FS=2.575;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.225;QD=21.07;ReadPosRankSum=2.914;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:3256,348,0 chrII 18531 . C T 2652 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.72;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2685,273,0 chrII 19466 . G A 3776.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.52;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3776,388,0 chrII 19713 . T C 4521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=200;Dels=0.00;FS=3.420;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.663;QD=22.61;ReadPosRankSum=1.663;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4521,498,0 chrII 19967 . T C 4265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.230;QD=24.51;ReadPosRankSum=1.672;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4265,456,0 chrII 20268 . C T 5753.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.0065;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.57;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5753,598,0 chrII 20442 . G C 4579.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.00;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:4579,507,0 chrII 20445 . A G 4726.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.82;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4726,493,0 chrII 20520 . C T 5218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=12.6555;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.058;QD=21.74;ReadPosRankSum=-0.670;SB=-3.215e+03 GT:AD:DP:GQ:PL 1/1:1,239:240:99:5218,521,0 chrII 21461 . T C 4310.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.49;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4310,454,0 chrII 21480 . G A 4422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.5478;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.279;QD=25.41;ReadPosRankSum=0.597;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4422,457,0 chrII 21610 . A T 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.616;QD=22.99;ReadPosRankSum=1.709;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3426,352,0 chrII 21612 . C T 3470.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=23.29;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3470,352,0 chrII 21769 . T G 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.472;HaplotypeScore=9.8322;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.094;QD=24.20;ReadPosRankSum=1.705;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3155,342,0 chrII 21967 . G A 2717 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=23.83;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2750,282,0 chrII 21977 . C A 2137 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=21.59;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2170,234,0 chrII 21979 . C A 2237 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=22.37;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2270,237,0 chrII 22280 . G A 2502 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.20;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2535,267,0 chrII 22296 . C G 2415 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.29;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2448,261,0 chrII 22415 . T A 2694 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.45;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2727,276,0 chrII 23230 . A G 6479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.375;DP=264;Dels=0.00;FS=8.632;HaplotypeScore=16.7694;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.288;QD=24.54;ReadPosRankSum=3.328;SB=-3.195e+03 GT:AD:DP:GQ:PL 1/1:4,259:264:99:6479,685,0 chrII 23766 . G A 2838 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=8.1104;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=18.79;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2871,300,0 chrII 23961 . C T 3894.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=24.49;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3894,400,0 chrII 24209 . T C 3178 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.03;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3211,339,0 chrII 24838 . A G 2947 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.77;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2980,321,0 chrII 24859 . G A 3225.28 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=25.00;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3258,337,0 chrII 25059 . C T 3398.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.12;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3398,357,0 chrII 25345 . A G 6910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=310;Dels=0.00;FS=3.532;HaplotypeScore=22.7580;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.398;QD=22.29;ReadPosRankSum=1.710;SB=-3.581e+03 GT:AD:DP:GQ:PL 1/1:1,308:310:99:6910,762,0 chrII 25639 . A T 6935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=295;Dels=0.00;FS=3.007;HaplotypeScore=18.3404;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.244;QD=23.51;ReadPosRankSum=2.408;SB=-3.844e+03 GT:AD:DP:GQ:PL 1/1:2,293:295:99:6935,721,0 chrII 25680 . C G 5879.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=14.4750;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.52;SB=-3.119e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5879,625,0 chrII 25978 . G A 3702.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.71;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3702,399,0 chrII 26029 . G A 3126 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.1933;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.43;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3159,345,0 chrII 26040 . C T 2996 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=19.71;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3029,333,0 chrII 26161 . G A 4253.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.3999;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.03;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4253,451,0 chrII 26500 . A C 4135.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.76;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4135,444,0 chrII 26767 . T A 4306.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4306,442,0 chrII 26815 . A G 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.824;DP=170;Dels=0.00;FS=3.029;HaplotypeScore=13.6925;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.472;QD=23.59;ReadPosRankSum=1.723;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:4011,424,0 chrII 26950 . T A 4593.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.4973;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.25;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4593,472,0 chrII 27157 . G A 3483.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3483,361,0 chrII 27577 . G A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.36;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3318,342,0 chrII 27850 . T C 5288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.390;DP=225;Dels=0.00;FS=2.390;HaplotypeScore=12.1631;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.370;QD=23.50;ReadPosRankSum=3.383;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:4,220:225:99:5288,568,0 chrII 27998 . G A 6123.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-3.565e+03 GT:AD:DP:GQ:PL 1/1:0,277:278:99:6123,634,0 chrII 28538 . A G 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=4.910;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.723;QD=25.93;ReadPosRankSum=0.532;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3293,348,0 chrII 28586 . G A 3741.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=27.92;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3741,385,0 chrII 28673 . T C 2638 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.14;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2671,282,0 chrII 28715 . A G 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.418;QD=15.74;ReadPosRankSum=1.702;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1875,204,0 chrII 28912 . A G 2373 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.97;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2406,255,0 chrII 29052 . T A 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-0.023;QD=21.67;ReadPosRankSum=2.374;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3533,364,0 chrII 29064 . T C 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.6558;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.065;QD=20.27;ReadPosRankSum=2.392;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3466,369,0 chrII 29190 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=3.528;HaplotypeScore=12.7967;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.072;QD=21.59;ReadPosRankSum=1.691;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3671,396,0 chrII 29269 . A G 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.3364;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.471;QD=19.44;ReadPosRankSum=1.697;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:3791,402,0 chrII 29361 . T C 4684.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.69;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4684,499,0 chrII 29377 . A C 4667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-1.439;QD=22.99;ReadPosRankSum=1.680;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4667,490,0 chrII 35631 . C T 789 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=32.44;MQ0=0;QD=12.33;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:84:822,84,0 chrII 36221 . A T 36.97 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.05;MQ0=7;QD=2.46;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:7,8:15:9:69,9,0 chrII 36389 . T C 4318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=177;Dels=0.00;FS=5.970;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;MQRankSum=-0.866;QD=24.40;ReadPosRankSum=2.925;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:3,170:177:99:4318,459,0 chrII 36517 . T C 800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=3.364;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=1.009;QD=6.96;ReadPosRankSum=1.702;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:833,110,0 chrII 36518 . C A 830 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3628;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=7.09;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:863,113,0 chrII 37628 . C T 5989.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.15;SB=-2.979e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5989,607,0 chrII 38659 . G A 1700 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1733,180,0 chrII 39405 . C T 4283.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.3790;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.06;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4283,448,0 chrII 39435 . T C 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=164;Dels=0.00;FS=2.984;HaplotypeScore=8.3702;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=1.446;QD=23.45;ReadPosRankSum=2.390;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3846,423,0 chrII 39605 . A G 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.714;QD=23.14;ReadPosRankSum=1.689;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3725,396,0 chrII 40260 . G A 4086.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.83;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4086,418,0 chrII 40479 . T C 1965 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.68;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1998,213,0 chrII 40554 . A G 1397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=2;MQRankSum=-0.717;QD=18.38;ReadPosRankSum=2.383;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1430,156,0 chrII 40882 . T C 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;MQRankSum=-0.238;QD=24.33;ReadPosRankSum=1.637;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2685,288,0 chrII 40983 . C T 3203 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.93;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3236,337,0 chrII 40992 . C T 3122 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.6037;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=20.41;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3155,333,0 chrII 41046 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.339;DP=174;Dels=0.00;FS=4.969;HaplotypeScore=11.2627;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.055;QD=20.87;ReadPosRankSum=3.369;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:4,170:174:99:3632,381,0 chrII 41484 . C T 4443.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.63;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4443,457,0 chrII 41506 . C A 3999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=166;Dels=0.00;FS=4.046;HaplotypeScore=5.5347;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.094;QD=24.09;ReadPosRankSum=0.199;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3999,394,0 chrII 41913 . A G 4501.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.2480;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.62;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4501,492,0 chrII 42187 . C A 3722.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.12;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3722,385,0 chrII 42836 . A G 4338.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.3573;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.23;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4338,462,0 chrII 42921 . G A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.9855;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.17;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3281,340,0 chrII 43179 . G A 2446 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=7.1986;MLEAC=2;MLEAF=1.00;MQ=60.80;MQ0=0;QD=22.65;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2479,258,0 chrII 43330 . G A 2567 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.04;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2600,279,0 chrII 43348 . A G 3101 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.24;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3134,348,0 chrII 43654 . T C 7131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=18.6131;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.469;QD=23.53;ReadPosRankSum=1.686;SB=-3.345e+03 GT:AD:DP:GQ:PL 1/1:1,302:303:99:7131,780,0 chrII 43688 . T C 6691.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=10.4466;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.23;SB=-3.816e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:6691,712,0 chrII 43708 . T C 6179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.386;DP=280;Dels=0.00;FS=14.699;HaplotypeScore=8.3104;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.445;QD=22.07;ReadPosRankSum=3.312;SB=-3.177e+03 GT:AD:DP:GQ:PL 1/1:4,276:280:99:6179,655,0 chrII 44047 . G A 3205.99 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3239,331,0 chrII 44098 . G T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.3443;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.47;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3279,340,0 chrII 44904 . C T 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.074;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.3872;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.417;QD=19.15;ReadPosRankSum=-0.175;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:3155,324,0 chrII 44974 . T C 4115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=189;Dels=0.00;FS=7.390;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.475;QD=21.77;ReadPosRankSum=2.372;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4115,435,0 chrII 45009 . G A 4351.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.91;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4351,445,0 chrII 45075 . C T 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.047;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.1312;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.853;QD=19.55;ReadPosRankSum=-1.085;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2594,270,0 chrII 45269 . T C 1707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;MQRankSum=-1.221;QD=10.04;ReadPosRankSum=2.406;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:1740,186,0 chrII 45271 . G T 1545 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=0;QD=9.04;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:1578,174,0 chrII 45299 . A G 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=175;Dels=0.00;FS=9.443;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;MQRankSum=-0.416;QD=12.74;ReadPosRankSum=2.393;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:2262,237,0 chrII 45392 . C G 2653 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.57;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2686,282,0 chrII 45824 . T C 3068 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3101,330,0 chrII 46603 . T C 3655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.6734;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.367;QD=25.21;ReadPosRankSum=2.347;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3655,393,0 chrII 46720 . T C 4953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=17.5900;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.984;QD=23.25;ReadPosRankSum=1.683;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4953,526,0 chrII 46930 . C A 5329.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=9.8322;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.68;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5329,553,0 chrII 47062 . A G 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=3.865;HaplotypeScore=11.2312;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.454;QD=24.56;ReadPosRankSum=1.670;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:4151,433,0 chrII 47244 . A T 5279.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=27.4200;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.37;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5279,553,0 chrII 47612 . T C 6371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=278;Dels=0.00;FS=6.792;HaplotypeScore=14.1451;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;MQRankSum=-0.447;QD=22.92;ReadPosRankSum=2.414;SB=-3.361e+03 GT:AD:DP:GQ:PL 1/1:2,275:278:99:6371,676,0 chrII 47971 . G A 5407.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=17.9902;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.29;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5407,565,0 chrII 48461 . C T 4109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.140;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=17.6264;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.001;QD=20.24;ReadPosRankSum=-0.670;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,199:203:99:4109,421,0 chrII 48655 . T C 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;DP=126;Dels=0.00;FS=10.832;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.089;QD=22.82;ReadPosRankSum=2.783;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:3,122:126:99:2908,315,0 chrII 48762 . T C 3858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=160;Dels=0.00;FS=5.764;HaplotypeScore=15.2983;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.541;QD=24.11;ReadPosRankSum=2.931;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3858,408,0 chrII 48881 . G C 2935 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=22.40;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2968,312,0 chrII 48887 . C T 2957 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.58;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2990,306,0 chrII 49026 . G A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.4820;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=23.87;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3366,346,0 chrII 49031 . T C 2958 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.13;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2991,321,0 chrII 49603 . A G 6385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=264;Dels=0.00;FS=6.491;HaplotypeScore=11.0738;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.810;QD=24.19;ReadPosRankSum=1.640;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,262:264:99:6385,688,0 chrII 49730 . T C 7604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=330;Dels=0.00;FS=7.565;HaplotypeScore=19.6076;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.921;QD=23.04;ReadPosRankSum=2.382;SB=-3.501e+03 GT:AD:DP:GQ:PL 1/1:2,327:330:99:7604,805,0 chrII 49999 . A G 4361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.664;DP=189;Dels=0.00;FS=10.904;HaplotypeScore=14.0294;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=0.515;QD=23.07;ReadPosRankSum=3.765;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:5,182:189:99:4361,463,0 chrII 50071 . T C 4532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.379;QD=21.38;ReadPosRankSum=1.699;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4532,481,0 chrII 50072 . G A 4565.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=21.84;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4565,475,0 chrII 50368 . G T 4128.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.31;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4128,441,0 chrII 50569 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=25.02;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3453,366,0 chrII 50601 . C A 3004 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.59;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3037,315,0 chrII 50611 . A G 3035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=-1.577;QD=22.65;ReadPosRankSum=1.680;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3068,324,0 chrII 50820 . C T 2749 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=25.22;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2782,288,0 chrII 50893 . G A 3196 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=23.50;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3229,333,0 chrII 50947 . A G 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.6939;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-1.057;QD=20.44;ReadPosRankSum=1.689;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3271,354,0 chrII 50954 . G C 3086 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.1145;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=20.44;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3119,327,0 chrII 51316 . A G 4066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=3.061;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.896;QD=23.37;ReadPosRankSum=1.712;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4066,453,0 chrII 51538 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=3.837;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.039;QD=25.07;ReadPosRankSum=1.709;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3785,405,0 chrII 51605 . G A 4261.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.7712;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.54;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4261,442,0 chrII 51976 . G A 4214.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.3798;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.78;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4214,447,0 chrII 52148 . G A 3841.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.95;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3841,400,0 chrII 52217 . C T 4321.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.98;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4321,448,0 chrII 53037 . G A 3744.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.1525;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.47;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3744,382,0 chrII 53153 . T C 5000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.695;QD=25.25;ReadPosRankSum=1.714;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:5000,532,0 chrII 53512 . A C 3003 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.1939;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.41;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3036,324,0 chrII 53554 . G C 2934 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.47;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2967,327,0 chrII 53802 . A C 3177 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=21.47;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3210,348,0 chrII 53815 . G A 3212.98 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=22.47;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3246,334,0 chrII 54034 . G A 4450.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=23.80;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4450,460,0 chrII 54042 . G A 3950.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=21.94;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3950,403,0 chrII 54156 . T C 4464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.3838;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.000;QD=25.08;ReadPosRankSum=1.712;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:4464,474,0 chrII 54607 . G A 3770.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.85;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3770,402,0 chrII 54682 . T C 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=3.441;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.492;QD=23.63;ReadPosRankSum=1.710;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3780,397,0 chrII 54988 . A G 2822 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.42;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2855,300,0 chrII 55182 . G A 3761.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.30;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3761,391,0 chrII 55325 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.87;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:3267,337,0 chrII 55537 . G C 4004.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4004,423,0 chrII 55693 . A C 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=167;Dels=0.00;FS=2.991;HaplotypeScore=9.8166;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.110;QD=22.01;ReadPosRankSum=2.361;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3675,405,0 chrII 56482 . G A 3803.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.19;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3803,397,0 chrII 56566 . C A 3106 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=22.19;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3139,324,0 chrII 56575 . A T 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=1.044;QD=20.85;ReadPosRankSum=1.686;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3181,330,0 chrII 56602 . G A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.95;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3259,339,0 chrII 56699 . C T 3360.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.9962;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.66;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3360,349,0 chrII 56942 . A T 2333 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2366,246,0 chrII 57316 . T C 2566 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2599,288,0 chrII 57674 . G C 3698.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.41;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,154:158:99:3698,385,0 chrII 57742 . C T 4676.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.48;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4676,484,0 chrII 57796 . A G 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.448;QD=21.92;ReadPosRankSum=1.635;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3190,354,0 chrII 58496 . A G 4655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=187;Dels=0.00;FS=3.028;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.750;QD=24.89;ReadPosRankSum=2.423;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:4655,499,0 chrII 58787 . A T 4169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.539;DP=180;Dels=0.00;FS=3.720;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.571;QD=23.16;ReadPosRankSum=1.674;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4169,441,0 chrII 58900 . A G 3191 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.12;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3224,345,0 chrII 59001 . C T 3842.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.72;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,158:162:99:3842,397,0 chrII 59164 . G C 3925.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.84;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3925,423,0 chrII 59191 . G C 3602.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.7102;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.39;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,150:154:99:3602,378,0 chrII 59525 . T C 3286.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2049;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.99;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3286,363,0 chrII 60298 . C T 3889.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=24.46;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3889,406,0 chrII 60446 . C T 3815.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.7635;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=24.77;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,150:154:99:3815,394,0 chrII 60470 . A G 3583.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=23.27;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3583,375,0 chrII 60478 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=21.58;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3432,363,0 chrII 60545 . C T 2927 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=20.33;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2960,301,0 chrII 60551 . G A 3014 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=20.64;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3047,312,0 chrII 60786 . T C 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=135;Dels=0.00;FS=5.976;HaplotypeScore=9.7141;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;MQRankSum=1.549;QD=23.36;ReadPosRankSum=2.948;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:3,131:135:99:3186,339,0 chrII 60829 . C A 2690 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;QD=23.60;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2723,288,0 chrII 60917 . C T 2128 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=12.8022;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=18.19;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2161,234,0 chrII 61024 . C A 2015 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=19.75;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2048,210,0 chrII 61031 . T C 1760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=3.696;HaplotypeScore=68.1567;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=0;MQRankSum=0.525;QD=19.56;ReadPosRankSum=1.654;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1793,201,0 chrII 61067 . G A 1141 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.11;MQ0=0;QD=13.11;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1174,123,0 chrII 61071 . G A 1225 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;QD=13.76;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1258,132,0 chrII 61089 . T A 1363 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;QD=14.82;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1396,141,0 chrII 61103 . T C 1495 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=15.90;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1528,171,0 chrII 61199 . A T 2383 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=115;Dels=0.02;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;MQRankSum=-0.199;QD=20.72;ReadPosRankSum=1.701;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2416,249,0 chrII 61202 . C T 2317 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;QD=19.64;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2350,243,0 chrII 61208 . C T 2246 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=19.88;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2279,240,0 chrII 61287 . G A 4057.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=23.32;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,170:173:99:4057,412,0 chrII 61304 . G A 4867.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=22.85;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4867,508,0 chrII 61376 . T C 5196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.7121;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.198;QD=24.63;ReadPosRankSum=1.716;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:5196,556,0 chrII 61447 . T C 5183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.3112;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.996;QD=21.60;ReadPosRankSum=1.703;SB=-2.951e+03 GT:AD:DP:GQ:PL 1/1:1,239:240:99:5183,544,0 chrII 61810 . C T 5028.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.9431;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.06;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5028,520,0 chrII 62000 . T C 3923.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.21;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3923,412,0 chrII 62157 . G A 3602.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.91;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3602,370,0 chrII 62381 . A G 4005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=4.208;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.148;QD=24.13;ReadPosRankSum=1.628;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4005,424,0 chrII 62879 . G C 2533 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.64;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2566,285,0 chrII 62891 . C T 2565 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=20.69;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2598,279,0 chrII 62971 . T C 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.012;QD=24.61;ReadPosRankSum=1.685;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3617,376,0 chrII 63113 . T C 2921 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=20.86;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2954,309,0 chrII 63115 . A T 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=3.138;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;MQRankSum=-0.753;QD=22.04;ReadPosRankSum=1.707;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3074,315,0 chrII 63144 . T C 2838 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=21.66;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2871,297,0 chrII 63295 . G T 2044 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=19.28;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2077,225,0 chrII 63304 . T A 2036 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=5.396;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=0;MQRankSum=-0.089;QD=20.78;ReadPosRankSum=1.696;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2069,222,0 chrII 63305 . G C 1950 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=19.50;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1983,228,0 chrII 63315 . T A 1984 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=19.64;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2017,219,0 chrII 63428 . C G 3367.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=14.1161;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.76;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3367,360,0 chrII 63732 . A G 3351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.317;DP=148;Dels=0.00;FS=9.036;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.756;QD=22.64;ReadPosRankSum=3.329;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:4,144:148:99:3351,357,0 chrII 63857 . T C 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.956;QD=24.80;ReadPosRankSum=1.672;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2935,315,0 chrII 63955 . G A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3467,358,0 chrII 64139 . C T 4758.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.9869;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.58;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4758,496,0 chrII 64250 . T A 4424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.302;QD=25.43;ReadPosRankSum=1.692;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4424,448,0 chrII 64291 . G A 3801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.321;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=15.9218;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.844;QD=23.76;ReadPosRankSum=-0.974;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3801,367,0 chrII 64716 . C G 3100 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.7909;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.48;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3133,333,0 chrII 64864 . A C 2174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=3.240;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.696;QD=22.41;ReadPosRankSum=1.696;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2207,234,0 chrII 65171 . T C 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.130;QD=22.56;ReadPosRankSum=1.685;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3316,351,0 chrII 65480 . G A 3649.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3649,379,0 chrII 65606 . C T 3401.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.95;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3401,346,0 chrII 65975 . C T 4845.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=15.9633;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.07;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,206:210:99:4845,517,0 chrII 66052 . T C 4659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.4157;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.245;QD=25.05;ReadPosRankSum=1.657;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4659,493,0 chrII 66467 . G A 5882.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=23.07;SB=-3.459e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5882,607,0 chrII 66479 . A G 5628.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.73;SB=-3.345e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5628,609,0 chrII 66566 . T C 4340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=201;Dels=0.00;FS=3.076;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.018;QD=21.59;ReadPosRankSum=1.680;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:4340,477,0 chrII 66975 . G T 1330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.199;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.999;QD=25.58;ReadPosRankSum=-0.133;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1363,120,0 chrII 67220 . C T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3295,342,0 chrII 68184 . C T 2099 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9728;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2132,216,0 chrII 68245 . G A 1406 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.68;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1439,150,0 chrII 68282 . G A 182.06 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.10;SB=-2.707e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:21:215,21,0 chrII 68834 . C T 4373.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4373,454,0 chrII 68867 . C T 4522.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.29;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4522,472,0 chrII 69128 . C G 5491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.285;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.4635;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.572;QD=25.07;ReadPosRankSum=0.870;SB=-2.930e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:5491,547,0 chrII 69229 . A G 5580.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.83;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5580,586,0 chrII 69278 . T C 5397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.407;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.8253;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.031;QD=23.99;ReadPosRankSum=-1.546;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:5397,547,0 chrII 69616 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.4067;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.49;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2827,303,0 chrII 69727 . T C 4368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.709;DP=184;Dels=0.00;FS=2.581;HaplotypeScore=15.5086;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.401;QD=23.74;ReadPosRankSum=2.907;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:4368,465,0 chrII 69772 . A G 6174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=254;Dels=0.00;FS=6.288;HaplotypeScore=12.2530;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.346;QD=24.31;ReadPosRankSum=1.704;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,250:254:99:6174,658,0 chrII 70169 . A G 7614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=298;Dels=0.00;FS=10.370;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.950;QD=25.55;ReadPosRankSum=2.970;SB=-3.656e+03 GT:AD:DP:GQ:PL 1/1:3,295:298:99:7614,805,0 chrII 70420 . G C 8398.01 filter AC=2;AF=1.00;AN=2;DP=376;Dels=0.00;FS=0.000;HaplotypeScore=34.1429;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.34;SB=-4.248e+03 GT:AD:DP:GQ:PL 1/1:0,368:376:99:8398,898,0 chrII 70525 . T C 10557.01 filter AC=2;AF=1.00;AN=2;DP=438;Dels=0.00;FS=0.000;HaplotypeScore=29.7870;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.10;SB=-5.329e+03 GT:AD:DP:GQ:PL 1/1:0,436:438:99:10557,1144,0 chrII 70638 . A G 9614.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=395;Dels=0.00;FS=0.000;HaplotypeScore=29.8970;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.362;QD=24.34;ReadPosRankSum=1.723;SB=-4.882e+03 GT:AD:DP:GQ:PL 1/1:1,392:395:99:9614,1021,0 chrII 71276 . C G 4950.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=16.2582;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.71;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4950,523,0 chrII 71383 . G C 3985.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.26;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3985,444,0 chrII 71420 . T C 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=5.022;HaplotypeScore=11.0903;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.584;QD=21.13;ReadPosRankSum=1.693;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3761,391,0 chrII 71634 . A T 1372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=74;Dels=0.00;FS=3.030;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.591;QD=18.54;ReadPosRankSum=2.382;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1405,156,0 chrII 71636 . T A 1465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=74;Dels=0.00;FS=6.707;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-1.842;QD=19.80;ReadPosRankSum=2.382;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1498,156,0 chrII 72018 . C G 4198.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.21;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4198,471,0 chrII 72096 . A T 5584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=1.191;QD=23.36;ReadPosRankSum=1.703;SB=-3.208e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:5584,580,0 chrII 72117 . A G 5514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=252;Dels=0.00;FS=9.400;HaplotypeScore=9.8198;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.375;QD=21.88;ReadPosRankSum=2.940;SB=-3.318e+03 GT:AD:DP:GQ:PL 1/1:3,249:252:99:5514,586,0 chrII 72209 . A G 7161.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=28.7947;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=23.25;SB=-3.092e+03 GT:AD:DP:GQ:PL 1/1:0,302:308:99:7161,804,0 chrII 72365 . G A 4467.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.947;DP=423;Dels=0.01;FS=6.877;HaplotypeScore=232.9016;MLEAC=1;MLEAF=0.500;MQ=49.24;MQ0=0;MQRankSum=4.363;QD=10.56;ReadPosRankSum=5.241;SB=-3.259e+03 GT:AD:DP:GQ:PL 0/1:132,287:420:95:4467,0,95 chrII 72377 . A G 2391.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.983;DP=417;Dels=0.00;FS=14.355;HaplotypeScore=175.7195;MLEAC=1;MLEAF=0.500;MQ=49.19;MQ0=0;MQRankSum=-2.177;QD=5.73;ReadPosRankSum=2.646;SB=-1.491e+03 GT:AD:DP:GQ:PL 0/1:239,176:417:99:2421,0,1081 chrII 72386 . A G 1489.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.119;DP=423;Dels=0.00;FS=11.903;HaplotypeScore=201.2234;MLEAC=1;MLEAF=0.500;MQ=49.56;MQ0=0;MQRankSum=-4.015;QD=3.52;ReadPosRankSum=-6.998;SB=-1.028e+03 GT:AD:DP:GQ:PL 0/1:275,145:423:99:1519,0,2003 chrII 72882 . G A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.1672;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.37;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4204,441,0 chrII 73354 . C T 3170 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.96;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3203,336,0 chrII 74263 . C T 5285.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.6963;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.93;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5285,544,0 chrII 74291 . C A 5130.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.64;SB=-2.898e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5130,544,0 chrII 74441 . A G 6467.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=10.6637;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.04;SB=-3.393e+03 GT:AD:DP:GQ:PL 1/1:0,268:269:99:6467,723,0 chrII 74528 . T C 5068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.778;DP=214;Dels=0.00;FS=5.999;HaplotypeScore=21.3657;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.929;QD=23.68;ReadPosRankSum=1.684;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:3,210:214:99:5068,523,0 chrII 74585 . C A 6445.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=13.3595;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=25.27;SB=-2.962e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:6445,658,0 chrII 74713 . G A 2943 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.5452;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=17.31;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2976,301,0 chrII 74767 . G A 4602.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.7024;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.24;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4602,478,0 chrII 74852 . T C 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=189;Dels=0.01;FS=2.152;HaplotypeScore=10.5400;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.296;QD=19.81;ReadPosRankSum=2.833;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:3,184:188:99:3744,405,0 chrII 74853 . A T 3712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.374;DP=188;Dels=0.02;FS=9.111;HaplotypeScore=9.7514;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=0.014;QD=19.74;ReadPosRankSum=3.326;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:4,181:185:99:3712,402,0 chrII 76220 . G A 4396.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.64;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4396,457,0 chrII 76807 . C T 3644.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3644,373,0 chrII 76869 . G A 3182 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.5300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.46;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3215,328,0 chrII 77577 . T C 3364.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.69;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3364,372,0 chrII 77651 . T C 3205.99 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.90;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3239,357,0 chrII 77699 . T A 3410.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.30;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3410,352,0 chrII 77714 . G C 3313.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=19.72;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3313,351,0 chrII 77748 . A G 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=173;Dels=0.00;FS=3.434;HaplotypeScore=14.3540;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=1.027;QD=19.54;ReadPosRankSum=1.692;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3380,372,0 chrII 77835 . A C 3739.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3739,402,0 chrII 78183 . C T 3209 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.5288;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3242,348,0 chrII 78288 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.267;QD=24.75;ReadPosRankSum=1.709;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3687,393,0 chrII 78537 . T C 3814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=152;Dels=0.00;FS=3.465;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.434;QD=25.09;ReadPosRankSum=1.709;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3814,405,0 chrII 78701 . C T 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.350;DP=120;Dels=0.00;FS=3.237;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.793;QD=21.52;ReadPosRankSum=0.646;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2615,250,0 chrII 78705 . C T 2611 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.76;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2644,270,0 chrII 79295 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.6383;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.89;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3536,367,0 chrII 79464 . A T 2541 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.4240;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=24.20;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2574,261,0 chrII 79470 . G A 2368 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1977;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.13;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2401,246,0 chrII 79692 . A C 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=130;Dels=0.00;FS=7.052;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.296;QD=24.42;ReadPosRankSum=2.412;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3208,345,0 chrII 79837 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.3619;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3273,337,0 chrII 80838 . A T 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.795;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.196;QD=25.32;ReadPosRankSum=1.642;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2970,303,0 chrII 81388 . G A 3153 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.3451;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=20.74;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3186,330,0 chrII 81418 . A G 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=3.471;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;MQRankSum=-0.988;QD=16.36;ReadPosRankSum=1.662;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2471,270,0 chrII 81427 . T A 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.29;MQ0=0;MQRankSum=0.298;QD=14.97;ReadPosRankSum=1.710;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2384,252,0 chrII 81448 . G A 1963 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=12.27;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:1996,207,0 chrII 81451 . A G 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=3.661;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.50;MQ0=0;MQRankSum=0.000;QD=11.04;ReadPosRankSum=1.710;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:1778,201,0 chrII 81460 . C T 1995 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.80;MQ0=0;QD=11.80;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2028,207,0 chrII 81478 . T C 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.8061;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;MQRankSum=-0.734;QD=12.46;ReadPosRankSum=1.676;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:2338,252,0 chrII 81655 . T C 4534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=201;Dels=0.00;FS=6.539;HaplotypeScore=14.6183;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;MQRankSum=-0.599;QD=22.56;ReadPosRankSum=2.413;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:2,197:201:99:4534,478,0 chrII 81997 . T C 3914.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3914,420,0 chrII 82573 . C T 3840.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3840,408,0 chrII 82750 . G T 3687.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3687,387,0 chrII 83659 . G A 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=-0.758;QD=21.69;ReadPosRankSum=1.075;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3340,345,0 chrII 83662 . A G 3422.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.3627;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=20.99;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3422,366,0 chrII 83698 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.6518;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=19.14;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3981,426,0 chrII 83713 . G C 3852.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=18.08;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,209:213:99:3852,408,0 chrII 83944 . G A 5998.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.5272;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=25.52;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5998,631,0 chrII 84352 . G A 1594 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=5.3887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.45;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1627,171,0 chrII 84413 . T A 77.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.398;DP=119;Dels=0.01;FS=28.256;HaplotypeScore=6.1648;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.436;QD=0.65;ReadPosRankSum=5.312;SB=-8.495e+02 GT:AD:DP:GQ:PL 1/1:15,103:118:12:110,12,0 chrII 84553 . C T 4426.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=25.29;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4426,463,0 chrII 84589 . C G 3187 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.55;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3220,357,0 chrII 84590 . C G 3393.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.69;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3393,357,0 chrII 84631 . C G 2858 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=18.56;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:2891,306,0 chrII 84718 . G A 5796.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=15.6700;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.21;SB=-3.279e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5796,601,0 chrII 84736 . C T 5725.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=8.7149;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.02;SB=-2.963e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5725,598,0 chrII 84823 . C T 5547.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=22.7623;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.64;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,242:245:99:5547,586,0 chrII 84862 . C T 6027.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=15.0903;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.40;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:6027,625,0 chrII 84985 . A T 4439.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.65;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4439,460,0 chrII 85060 . C T 5591.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.10;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5591,589,0 chrII 85339 . A G 4015.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.34;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4015,447,0 chrII 85504 . T C 3814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=3.208;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.445;QD=24.29;ReadPosRankSum=1.710;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3814,408,0 chrII 85528 . T C 3831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=3.979;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.279;QD=24.56;ReadPosRankSum=1.710;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3831,411,0 chrII 85816 . A G 4197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=5.138;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.011;QD=24.12;ReadPosRankSum=1.632;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4197,468,0 chrII 85903 . G A 3807.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3807,394,0 chrII 86390 . G A 4608.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.3181;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.91;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4608,478,0 chrII 86416 . T C 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=170;Dels=0.00;FS=2.981;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.240;QD=23.54;ReadPosRankSum=2.391;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:4002,444,0 chrII 86465 . T A 4112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-0.064;QD=21.76;ReadPosRankSum=1.549;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4112,441,0 chrII 86473 . A G 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=3.346;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.092;QD=21.48;ReadPosRankSum=1.695;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4060,435,0 chrII 86518 . G A 4306.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.84;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,213:217:99:4306,454,0 chrII 86533 . C T 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=222;Dels=0.00;FS=4.090;HaplotypeScore=12.5474;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.938;QD=18.75;ReadPosRankSum=-1.335;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:1,217:222:99:4162,447,0 chrII 86679 . C A 5312.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=23.00;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5312,550,0 chrII 86699 . A G 4793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=219;Dels=0.00;FS=6.929;HaplotypeScore=11.3714;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-0.232;QD=21.89;ReadPosRankSum=2.393;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:2,215:219:99:4793,505,0 chrII 87000 . A G 3486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=157;Dels=0.00;FS=6.331;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.479;QD=22.20;ReadPosRankSum=2.403;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3486,369,0 chrII 87264 . A G 3921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.711;QD=23.48;ReadPosRankSum=1.711;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3921,417,0 chrII 87294 . C T 3339.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.37;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3339,343,0 chrII 87772 . A G 3941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.5829;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.304;QD=21.65;ReadPosRankSum=2.396;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3941,423,0 chrII 87809 . A G 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=18.0737;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.675;QD=21.65;ReadPosRankSum=2.424;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4136,444,0 chrII 88046 . T C 2943 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.73;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2976,318,0 chrII 88087 . T G 2472 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.6039;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.26;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2505,267,0 chrII 88152 . G A 1487 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=18.13;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1520,165,0 chrII 88153 . G T 1540 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=18.55;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1573,168,0 chrII 88289 . T C 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.638;QD=25.08;ReadPosRankSum=1.659;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2441,255,0 chrII 89252 . C G 2736 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.21;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2769,294,0 chrII 89325 . T C 2950 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.7900;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.79;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2983,318,0 chrII 89547 . A G 4196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=177;Dels=0.00;FS=3.672;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.186;QD=23.71;ReadPosRankSum=1.654;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4196,447,0 chrII 89606 . G A 3883.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=21.94;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3883,400,0 chrII 89612 . C T 3799.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=20.32;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3799,391,0 chrII 89621 . A C 3519.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.52;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3519,393,0 chrII 89628 . A G 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=191;Dels=0.00;FS=2.561;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=1.890;QD=18.50;ReadPosRankSum=2.805;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:3533,381,0 chrII 89733 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=23.49;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3500,361,0 chrII 89751 . T C 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=167;Dels=0.00;FS=7.290;HaplotypeScore=6.5996;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-1.665;QD=23.00;ReadPosRankSum=2.331;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3841,411,0 chrII 89785 . T C 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=161;Dels=0.00;FS=6.101;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-1.421;QD=23.14;ReadPosRankSum=2.956;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:3,157:161:99:3725,402,0 chrII 89926 . A T 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=144;Dels=0.00;FS=3.802;HaplotypeScore=16.3293;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.938;QD=20.83;ReadPosRankSum=1.660;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3033,312,0 chrII 89964 . C A 4723.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.9018;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=23.38;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4723,484,0 chrII 90193 . C A 3977.01 SnpCluster AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.4786;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=21.04;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3977,432,0 chrII 90196 . C A 3717.01 SnpCluster AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=20.31;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3717,399,0 chrII 90202 . T G 3778.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=4.896;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=0.492;QD=21.47;ReadPosRankSum=1.712;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3778,402,0 chrII 90237 . C T 3121 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=20.14;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3154,327,0 chrII 90273 . T C 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=131;Dels=0.00;FS=9.859;HaplotypeScore=112.6536;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;MQRankSum=-1.146;QD=17.73;ReadPosRankSum=2.931;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2356,252,0 chrII 90282 . T G 35.97 filter AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.95;MQ0=0;QD=0.27;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:9:68,9,0 chrII 90326 . C T 3515.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=27.8848;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=20.44;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3515,369,0 chrII 90695 . G A 3394.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.90;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3394,349,0 chrII 90715 . G C 2936 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.30;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2969,315,0 chrII 91043 . G A 4147.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.68;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4147,433,0 chrII 91278 . C T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.6145;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.99;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3424,352,0 chrII 91811 . C T 4213.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.4505;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.38;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4213,436,0 chrII 91895 . C T 2625 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.67;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2658,279,0 chrII 92047 . A T 3144 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2683;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.18;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3177,327,0 chrII 92128 . C T 2440 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=24.40;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2473,258,0 chrII 92362 . C T 2912 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=24.07;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2945,315,0 chrII 92393 . C A 2771 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=21.82;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2804,291,0 chrII 92395 . C A 2744 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=22.13;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2777,285,0 chrII 92890 . A G 3159 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.56;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3192,351,0 chrII 92992 . T C 4745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.6451;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.046;QD=24.21;ReadPosRankSum=1.848;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4745,491,0 chrII 93100 . A G 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=3.568;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.732;QD=25.30;ReadPosRankSum=1.711;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4199,445,0 chrII 93235 . T C 3783.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=22.12;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3783,402,0 chrII 93240 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=21.08;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3605,370,0 chrII 93469 . A G 1995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=80.6470;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-0.671;QD=21.92;ReadPosRankSum=2.368;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:2,88:91:99:2028,216,0 chrII 93526 . A G 1289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.004;DP=66;Dels=0.00;FS=4.836;HaplotypeScore=10.4155;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-0.145;QD=19.53;ReadPosRankSum=4.004;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:6,60:66:99:1322,144,0 chrII 93696 . G A 1734 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=25.50;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1767,198,0 chrII 93772 . C T 2305 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.8840;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.52;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2338,243,0 chrII 93811 . T C 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.219;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.162;QD=24.21;ReadPosRankSum=1.597;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3132,333,0 chrII 93840 . C T 3740.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.5618;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.40;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3740,399,0 chrII 95093 . T G 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=135;Dels=0.00;FS=3.915;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=0.951;QD=22.89;ReadPosRankSum=1.680;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:3123,333,0 chrII 95270 . C T 2743 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=23.44;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2776,294,0 chrII 95275 . A G 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=3.085;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-0.675;QD=22.24;ReadPosRankSum=1.703;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2680,282,0 chrII 95343 . T C 3204 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.2790;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=20.41;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3237,345,0 chrII 95358 . T C 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=0.011;QD=21.68;ReadPosRankSum=1.709;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3295,360,0 chrII 95360 . A G 3508.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=22.78;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3508,369,0 chrII 95376 . C T 3676.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.9350;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=22.01;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3676,387,0 chrII 95603 . G A 3843.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=23.87;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3843,405,0 chrII 95739 . G A 3619.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.97;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3619,379,0 chrII 95759 . G A 3723.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=24.18;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3723,382,0 chrII 96314 . A G 2055 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=20.35;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2088,216,0 chrII 96328 . A G 2002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=1.683;QD=19.07;ReadPosRankSum=2.933;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:3,102:105:99:2035,213,0 chrII 96610 . A G 2239 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.3227;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.03;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2272,240,0 chrII 96664 . A G 2837 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.27;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2870,303,0 chrII 96723 . G A 3179 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3212,339,0 chrII 96789 . C T 3642.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.62;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3642,384,0 chrII 97068 . A G 5245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.6607;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.588;QD=24.62;ReadPosRankSum=1.716;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:5245,556,0 chrII 97117 . T C 5187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.446;QD=24.35;ReadPosRankSum=1.836;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:2,210:213:99:5187,547,0 chrII 97341 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=3.128;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.602;QD=17.52;ReadPosRankSum=1.695;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3276,351,0 chrII 97345 . T C 3054 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=16.69;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3087,330,0 chrII 97513 . A T 4120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=174;Dels=0.00;FS=3.165;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=1.148;QD=23.68;ReadPosRankSum=1.692;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4120,430,0 chrII 97530 . T C 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=181;Dels=0.00;FS=3.024;HaplotypeScore=11.3975;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-1.146;QD=21.48;ReadPosRankSum=2.367;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:3887,420,0 chrII 97590 . T C 4017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=184;Dels=0.00;FS=3.001;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=-0.768;QD=21.83;ReadPosRankSum=2.369;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4017,432,0 chrII 97608 . T C 4553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=190;Dels=0.00;FS=3.056;HaplotypeScore=4.2159;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-1.459;QD=23.96;ReadPosRankSum=1.714;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4553,475,0 chrII 97707 . T C 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=149;Dels=0.00;FS=6.349;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.817;QD=22.87;ReadPosRankSum=2.417;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3407,357,0 chrII 97805 . G A 4331.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=17.7078;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.03;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4331,442,0 chrII 97956 . C T 3166 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3199,333,0 chrII 99156 . G C 4045.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.2272;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.29;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4045,459,0 chrII 99188 . C T 4081.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.0737;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.18;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4081,424,0 chrII 99228 . T C 3979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=197;Dels=0.00;FS=6.734;HaplotypeScore=13.5233;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.393;QD=20.20;ReadPosRankSum=2.425;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:3979,438,0 chrII 99464 . A G 4729.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.53;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4729,502,0 chrII 99756 . G C 4486.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=20.48;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4486,489,0 chrII 99759 . C T 4601.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.30;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4601,484,0 chrII 99849 . G A 5258.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.92;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:5258,562,0 chrII 100367 . A T 3715.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.44;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3715,396,0 chrII 100413 . A G 3733.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3733,405,0 chrII 100878 . G A 3809.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.08;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3809,399,0 chrII 100968 . C T 3874.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.8116;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=24.83;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3874,403,0 chrII 101028 . T C 4254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=177;Dels=0.00;FS=7.443;HaplotypeScore=11.5885;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-1.556;QD=24.03;ReadPosRankSum=2.422;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:4254,450,0 chrII 101040 . T C 3923.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.55;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3923,420,0 chrII 101103 . A G 2557 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5203;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.13;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2590,273,0 chrII 101479 . C T 2264 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.2244;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.09;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2297,240,0 chrII 101694 . A G 3777.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=25.35;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3777,399,0 chrII 102050 . A G 5581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=335;Dels=0.00;FS=2.584;HaplotypeScore=4.4736;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.860;QD=16.66;ReadPosRankSum=2.435;SB=-3.106e+03 GT:AD:DP:GQ:PL 1/1:2,333:335:99:5581,589,0 chrII 102053 . T C 5771.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=2.8963;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=16.68;SB=-3.115e+03 GT:AD:DP:GQ:PL 1/1:0,346:346:99:5771,633,0 chrII 102419 . G A 3326.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.8803;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.59;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3326,343,0 chrII 102734 . C T 4461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.297;QD=22.19;ReadPosRankSum=0.775;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4461,492,0 chrII 102770 . A G 4970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.6408;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.308;QD=25.10;ReadPosRankSum=1.679;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4970,523,0 chrII 102815 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.22;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3808,405,0 chrII 102893 . T C 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.725;QD=22.38;ReadPosRankSum=1.673;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2651,288,0 chrII 102914 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.29;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2873,312,0 chrII 103296 . C T 1855 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1888,195,0 chrII 103652 . C T 2437 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.9054;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.20;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2470,258,0 chrII 103960 . C A 2932 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2965,306,0 chrII 104641 . T C 3072 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=25.60;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3105,330,0 chrII 104669 . G A 2556 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.45;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2589,279,0 chrII 104735 . G A 3178 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3211,354,0 chrII 104888 . T C 3658.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.2888;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.88;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3658,387,0 chrII 105149 . C A 1898 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.57;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1931,204,0 chrII 105286 . T C 2940 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=21.15;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2973,315,0 chrII 105289 . A G 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.124;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=0.124;QD=21.15;ReadPosRankSum=-1.608;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2994,290,0 chrII 105316 . T C 1809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.487;DP=113;Dels=0.00;FS=3.207;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-0.291;QD=16.01;ReadPosRankSum=1.671;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1842,198,0 chrII 105376 . T C 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=111;Dels=0.00;FS=2.947;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.477;QD=19.58;ReadPosRankSum=2.361;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2206,237,0 chrII 105422 . A G 2861 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.45;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2894,309,0 chrII 105449 . A G 2752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.517;QD=23.93;ReadPosRankSum=1.702;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2785,297,0 chrII 105583 . G A 2888 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.2283;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=23.29;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2921,309,0 chrII 105621 . G A 2742 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=23.04;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2775,291,0 chrII 105670 . C T 2605 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.2770;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=22.26;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2638,270,0 chrII 105675 . C A 2453 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.4617;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=21.52;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2486,255,0 chrII 105799 . C T 6213.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=25.36;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:6213,634,0 chrII 105811 . G A 5814.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=5.1641;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.07;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:5814,607,0 chrII 105868 . C T 4520.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.8120;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.94;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4520,472,0 chrII 105973 . A G 6938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=17.3117;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.020;QD=23.68;ReadPosRankSum=1.127;SB=-3.126e+03 GT:AD:DP:GQ:PL 1/1:1,291:293:99:6938,730,0 chrII 106303 . T C 4571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=211;Dels=0.00;FS=3.886;HaplotypeScore=20.6924;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.783;QD=21.66;ReadPosRankSum=1.682;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:1,207:211:99:4571,492,0 chrII 106348 . T A 4334.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.9515;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4334,448,0 chrII 106546 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.99;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3343,346,0 chrII 106651 . A G 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.671;QD=23.27;ReadPosRankSum=1.667;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3770,394,0 chrII 107123 . A T 3626.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.09;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3626,373,0 chrII 107326 . T G 3387.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0920;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.72;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3387,354,0 chrII 107418 . T C 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.836;QD=25.14;ReadPosRankSum=1.708;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3620,387,0 chrII 107690 . C T 3786.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.1404;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.23;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3786,405,0 chrII 107779 . C T 3750.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.01;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3750,396,0 chrII 107893 . T C 4432.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.9091;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=25.18;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4432,466,0 chrII 107917 . G C 4226.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.74;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,174:178:99:4226,456,0 chrII 108169 . G A 5128.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=12.5131;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.89;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5128,535,0 chrII 108303 . C T 5107.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.44;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5107,532,0 chrII 108452 . T A 4288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.636;QD=26.97;ReadPosRankSum=1.710;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:4288,436,0 chrII 108510 . T C 3694.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.6697;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.66;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3694,393,0 chrII 108543 . G A 3816.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.99;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3816,400,0 chrII 108764 . T C 3864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.2976;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.057;QD=24.93;ReadPosRankSum=1.687;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3864,414,0 chrII 108976 . G A 3826.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.17;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3826,400,0 chrII 109623 . C T 5116.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5116,529,0 chrII 109773 . G A 3938.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=23.87;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3938,403,0 chrII 109845 . G A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.56;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3880,400,0 chrII 109953 . C T 1634 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=20.68;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1667,171,0 chrII 109980 . T C 1759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=3.664;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-0.838;QD=18.91;ReadPosRankSum=1.695;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1792,186,0 chrII 109992 . C T 1744 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.66;MQ0=0;QD=18.75;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1777,183,0 chrII 109997 . T C 1565 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.42;MQ0=0;QD=16.47;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1598,171,0 chrII 110024 . T C 1344 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;QD=13.71;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1377,153,0 chrII 110028 . C G 1400 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.6834;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=13.73;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:1433,156,0 chrII 110115 . A C 2871 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=13.8941;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.54;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2904,312,0 chrII 110153 . T G 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.729;QD=25.34;ReadPosRankSum=2.407;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2973,321,0 chrII 110550 . T C 4737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=193;Dels=0.00;FS=3.265;HaplotypeScore=7.1923;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.122;QD=24.54;ReadPosRankSum=1.696;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4737,499,0 chrII 110721 . G A 4635.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=25.75;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4635,475,0 chrII 110743 . C T 3851.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=19.75;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3851,411,0 chrII 110746 . T C 3928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=191;Dels=0.00;FS=3.032;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.456;QD=20.57;ReadPosRankSum=2.398;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3928,417,0 chrII 111288 . A C 3750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=171;Dels=0.00;FS=6.519;HaplotypeScore=7.9681;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-1.688;QD=21.93;ReadPosRankSum=2.421;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3750,393,0 chrII 111306 . A C 3738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=3.061;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.080;QD=21.24;ReadPosRankSum=1.692;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3738,408,0 chrII 111639 . A G 5969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=265;Dels=0.00;FS=2.313;HaplotypeScore=238.0085;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=1.186;QD=22.52;ReadPosRankSum=1.625;SB=-3.116e+03 GT:AD:DP:GQ:PL 1/1:3,262:265:99:5969,605,0 chrII 111699 . G A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.03;FS=0.000;HaplotypeScore=21.6868;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=19.64;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4204,448,0 chrII 111739 . G A 4334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.4528;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.820;QD=20.84;ReadPosRankSum=1.715;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:4334,457,0 chrII 111751 . T G 4657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=204;Dels=0.00;FS=10.171;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=1.773;QD=22.83;ReadPosRankSum=2.946;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:3,201:204:99:4657,496,0 chrII 111931 . T G 4833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=15.6578;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.187;QD=23.35;ReadPosRankSum=1.715;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:1,203:207:99:4833,531,0 chrII 111970 . G A 5113.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=15.3522;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=24.70;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5113,532,0 chrII 111999 . T C 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=204;Dels=0.00;FS=3.437;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-0.196;QD=20.75;ReadPosRankSum=1.613;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4234,450,0 chrII 112018 . T G 4097.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.7049;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.38;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4097,433,0 chrII 112096 . A T 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.7109;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.026;QD=23.47;ReadPosRankSum=1.666;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3708,390,0 chrII 112335 . C A 2416 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.1680;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.01;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2449,252,0 chrII 112372 . A G 2111 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=20.70;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2144,228,0 chrII 112378 . A G 2008 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.59;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2041,213,0 chrII 112399 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=21.47;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2481,255,0 chrII 112452 . T C 2000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;MQRankSum=-1.078;QD=14.49;ReadPosRankSum=2.378;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2033,219,0 chrII 112454 . C T 1995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.5612;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;MQRankSum=-1.059;QD=13.85;ReadPosRankSum=-0.890;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2028,210,0 chrII 112527 . A G 2827 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=17.56;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2860,318,0 chrII 112544 . A T 3612.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.9534;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.58;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3612,373,0 chrII 112618 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.5282;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.55;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3450,378,0 chrII 112684 . C A 4669.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=23.70;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4669,484,0 chrII 113236 . A G 7558.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=365;Dels=0.00;FS=2.923;HaplotypeScore=23.8889;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.659;QD=20.71;ReadPosRankSum=2.395;SB=-3.939e+03 GT:AD:DP:GQ:PL 1/1:2,361:365:99:7558,837,0 chrII 113452 . C T 5808.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=8.2744;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.25;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5808,604,0 chrII 114676 . G A 5136.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:5136,535,0 chrII 114766 . T C 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=168;Dels=0.00;FS=5.608;HaplotypeScore=13.5558;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.958;QD=23.89;ReadPosRankSum=2.934;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:4014,429,0 chrII 114793 . A G 4023.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=25.14;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:4023,426,0 chrII 115049 . A G 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.797;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.2255;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.120;QD=21.16;ReadPosRankSum=1.377;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:3,166:171:99:3618,384,0 chrII 115263 . T C 2597 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.98;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2630,288,0 chrII 115635 . C T 3414.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.1017;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=25.29;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3414,355,0 chrII 116476 . A G 7073.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.99;SB=-2.902e+03 GT:AD:DP:GQ:PL 1/1:0,283:283:99:7073,754,0 chrII 116518 . C T 6588.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=15.2029;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.73;SB=-3.071e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:6588,670,0 chrII 116962 . G C 4222.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.5274;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.70;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:4222,456,0 chrII 117243 . G A 4936.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=25.06;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4936,520,0 chrII 117318 . G C 2993 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.5598;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.17;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3026,324,0 chrII 117485 . A G 3651.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.54;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3651,387,0 chrII 117506 . A G 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=181;Dels=0.00;FS=5.047;HaplotypeScore=6.6395;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-1.093;QD=21.16;ReadPosRankSum=1.713;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:3830,411,0 chrII 117719 . C T 5526.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.37;SB=-3.126e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5526,589,0 chrII 117972 . G A 4515.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.46;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4515,478,0 chrII 118205 . C T 4392.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.5096;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4392,457,0 chrII 118323 . C T 4727.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.41;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4727,487,0 chrII 118370 . A G 4126.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.41;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4126,441,0 chrII 118422 . G A 3727.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.05;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3727,385,0 chrII 118815 . G A 3903.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.55;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3903,406,0 chrII 118905 . T C 4015.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.3281;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.31;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4015,429,0 chrII 118921 . C T 3538.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=21.84;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3538,367,0 chrII 118944 . T C 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=-0.087;QD=18.64;ReadPosRankSum=1.632;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2643,288,0 chrII 118953 . C T 2490 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=18.44;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2523,267,0 chrII 119406 . T G 4181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.674;DP=173;Dels=0.00;FS=4.802;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.041;QD=24.17;ReadPosRankSum=3.783;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:5,168:173:99:4181,465,0 chrII 119446 . C T 5189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.5452;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.026;QD=25.95;ReadPosRankSum=-0.290;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,197:200:99:5189,535,0 chrII 119499 . A G 4453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=5.192;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=1.359;QD=22.84;ReadPosRankSum=1.714;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4453,498,0 chrII 119523 . G T 4205.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.4879;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=22.13;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4205,436,0 chrII 119580 . G T 4773.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=19.81;SB=-3.374e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:4773,496,0 chrII 119586 . G A 4653.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=19.55;SB=-3.223e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:4653,481,0 chrII 119892 . G T 3690.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.63;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3690,379,0 chrII 119934 . T C 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=3.105;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.262;QD=23.94;ReadPosRankSum=1.707;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3327,351,0 chrII 120030 . G T 2464 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2497,258,0 chrII 120170 . G A 3166 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3199,328,0 chrII 120369 . G C 2490 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.41;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2523,267,0 chrII 120427 . C T 2745 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2778,288,0 chrII 120585 . A G 2293 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2326,258,0 chrII 120703 . G A 2858 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.52;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2891,292,0 chrII 120867 . G T 2515 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2548,261,0 chrII 121194 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.37;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2787,285,0 chrII 121290 . T A 3183 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.9084;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.30;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3216,331,0 chrII 121421 . G A 3070 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.96;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3103,321,0 chrII 121451 . C T 3352.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.19;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3352,340,0 chrII 121576 . C G 2806 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.38;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2839,300,0 chrII 121681 . C T 3096 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.38;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3129,327,0 chrII 121800 . A G 2843 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.22;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2876,306,0 chrII 121899 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=24.79;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3496,372,0 chrII 121908 . G A 3415.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.92;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3415,355,0 chrII 122996 . G A 4938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=227;Dels=0.00;FS=3.107;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=0.984;QD=21.75;ReadPosRankSum=1.183;SB=-3.056e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:4938,514,0 chrII 123008 . G A 4744.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=2.7442;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=19.85;SB=-3.160e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:4744,507,0 chrII 123023 . A C 4207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-0.877;QD=18.13;ReadPosRankSum=1.672;SB=-3.026e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:4207,465,0 chrII 123103 . T A 5204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=223;Dels=0.00;FS=3.779;HaplotypeScore=14.2266;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.967;QD=23.34;ReadPosRankSum=1.701;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:5204,526,0 chrII 123502 . C A 4946.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=17.8925;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.00;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:0,211:215:99:4946,514,0 chrII 123940 . C T 4619.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4619,481,0 chrII 124174 . C G 4059.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.06;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,179:184:99:4059,438,0 chrII 124286 . C A 3100 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9795;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.81;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3133,324,0 chrII 124305 . C T 3497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.9842;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.490;QD=21.86;ReadPosRankSum=0.948;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3497,361,0 chrII 124505 . A G 4014.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.78;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4014,444,0 chrII 124574 . T C 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=1.009;QD=22.12;ReadPosRankSum=1.707;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,138:142:99:3174,345,0 chrII 124595 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=22.05;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3032,312,0 chrII 124617 . A G 2730 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=19.64;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2763,306,0 chrII 124723 . C T 4339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=177;Dels=0.00;FS=3.460;HaplotypeScore=13.9407;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.851;QD=24.51;ReadPosRankSum=0.330;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:4339,448,0 chrII 125099 . C A 4565.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.1352;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.53;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4565,481,0 chrII 125552 . T C 2837 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.4608;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.25;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2870,303,0 chrII 126253 . G A 4149.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.4230;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=22.80;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4149,421,0 chrII 126263 . T C 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6417;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.244;QD=20.39;ReadPosRankSum=2.422;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3589,390,0 chrII 127596 . T C 1926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=-0.564;QD=22.40;ReadPosRankSum=1.692;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1959,210,0 chrII 128153 . A C 5572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=226;Dels=0.00;FS=3.483;HaplotypeScore=7.6946;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.816;QD=24.65;ReadPosRankSum=1.717;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:1,222:226:99:5572,592,0 chrII 128244 . G T 5829.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=10.4405;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.08;SB=-3.471e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:5829,598,0 chrII 128257 . A G 5550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.381;DP=265;Dels=0.00;FS=8.579;HaplotypeScore=10.5015;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=0.964;QD=20.94;ReadPosRankSum=3.262;SB=-3.177e+03 GT:AD:DP:GQ:PL 1/1:4,259:265:99:5550,583,0 chrII 128547 . A G 3899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=158;Dels=0.00;FS=2.921;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.086;QD=24.68;ReadPosRankSum=2.418;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3899,411,0 chrII 129267 . T A 4904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=213;Dels=0.00;FS=6.251;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=-2.019;QD=23.02;ReadPosRankSum=2.415;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4904,523,0 chrII 129791 . T A 5930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=6.3804;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.995;QD=23.53;ReadPosRankSum=1.718;SB=-3.319e+03 GT:AD:DP:GQ:PL 1/1:1,251:252:99:5930,637,0 chrII 130407 . A G 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=188;Dels=0.00;FS=2.580;HaplotypeScore=25.8938;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.038;QD=21.96;ReadPosRankSum=2.963;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:4128,453,0 chrII 133938 . A C 767 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:34:87:800,87,0 chrII 135370 . G A 4685.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.53;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4685,478,0 chrII 136268 . G T 5033.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.98;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5033,523,0 chrII 136320 . A G 3937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.1233;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.097;QD=21.87;ReadPosRankSum=1.713;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3937,415,0 chrII 136459 . T A 1130 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=14.7845;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.38;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1163,120,0 chrII 136838 . A G 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=166;Dels=0.00;FS=10.933;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-0.833;QD=20.67;ReadPosRankSum=2.883;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:3,160:166:99:3432,363,0 chrII 136840 . A T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.87;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3444,352,0 chrII 137425 . A T 6045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.115;QD=20.92;ReadPosRankSum=1.708;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,288:289:99:6045,622,0 chrII 137745 . A G 2520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=13.096;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.732;QD=24.47;ReadPosRankSum=1.698;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2553,291,0 chrII 137859 . T G 1978 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=21.98;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2011,216,0 chrII 137868 . A G 2247 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=21.40;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2280,246,0 chrII 137948 . A G 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.0249;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.546;QD=22.42;ReadPosRankSum=1.709;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3363,346,0 chrII 138154 . A T 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-1.026;QD=24.06;ReadPosRankSum=1.698;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2511,264,0 chrII 138346 . T C 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=134;Dels=0.00;FS=2.760;HaplotypeScore=9.7022;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.444;QD=20.31;ReadPosRankSum=2.412;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:2,130:134:99:2754,297,0 chrII 138529 . G T 4775.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.18;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4775,496,0 chrII 140131 . T C 3752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=164;Dels=0.00;FS=3.027;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.217;QD=22.88;ReadPosRankSum=2.405;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3752,396,0 chrII 141708 . G A 4960.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=17.0020;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4960,511,0 chrII 142186 . G A 2565 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.5705;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.11;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2598,270,0 chrII 142208 . G A 2732 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8545;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=21.86;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2765,285,0 chrII 142625 . C T 5171.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.62;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5171,550,0 chrII 143094 . T C 2907 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=23.07;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2940,309,0 chrII 143127 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=21.02;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2618,273,0 chrII 143136 . T C 2432 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=19.30;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2465,276,0 chrII 143142 . C T 2563 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=20.18;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2596,264,0 chrII 143329 . G C 2581 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=23.68;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2614,276,0 chrII 143473 . G T 2314 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=23.86;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2347,249,0 chrII 143695 . A G 1340 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.51;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1373,147,0 chrII 143777 . G T 1434 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.40;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1467,159,0 chrII 143782 . C A 1550 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=23.48;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1583,165,0 chrII 144190 . G A 3785.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.1923;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.42;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3785,414,0 chrII 144610 . T C 4474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=202;Dels=0.00;FS=9.911;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=1.568;QD=22.15;ReadPosRankSum=2.925;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:3,197:202:99:4474,483,0 chrII 144658 . A G 4523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=220;Dels=0.00;FS=5.854;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.904;QD=20.56;ReadPosRankSum=2.913;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:3,216:220:99:4523,481,0 chrII 144660 . T C 4518.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.11;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,210:214:99:4518,483,0 chrII 144742 . T C 4848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=220;Dels=0.00;FS=7.713;HaplotypeScore=18.3356;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.096;QD=22.04;ReadPosRankSum=2.404;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:2,216:220:99:4848,540,0 chrII 145172 . A G 5614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=227;Dels=0.00;FS=3.068;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.221;QD=24.73;ReadPosRankSum=1.702;SB=-3.000e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:5614,595,0 chrII 145474 . A G 5369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=224;Dels=0.00;FS=3.502;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-1.175;QD=23.97;ReadPosRankSum=1.717;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:5369,565,0 chrII 145486 . A G 5015.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.59;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5015,532,0 chrII 146003 . C T 1845 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.93;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1878,195,0 chrII 146004 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.31;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1856,195,0 chrII 146672 . G T 3637.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.09;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3637,379,0 chrII 146699 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.86;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3828,391,0 chrII 146956 . T C 2958 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.25;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2991,315,0 chrII 147417 . A C 3327.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3327,354,0 chrII 147685 . T C 3358.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3358,363,0 chrII 148600 . T A 4281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=3.036;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.151;QD=25.48;ReadPosRankSum=1.628;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4281,442,0 chrII 149549 . T A 4264.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.9812;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.05;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4264,453,0 chrII 152750 . A C 3818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8096;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.984;QD=23.57;ReadPosRankSum=1.689;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3818,423,0 chrII 153007 . C T 2857 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2890,306,0 chrII 154025 . A G 4587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.367;QD=24.02;ReadPosRankSum=1.659;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4587,495,0 chrII 155354 . A G 3983.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.43;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3983,429,0 chrII 155739 . T G 2167 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.05;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2200,231,0 chrII 155783 . A G 2075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.784;QD=21.61;ReadPosRankSum=1.696;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2108,225,0 chrII 156071 . C T 2718 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2751,282,0 chrII 156194 . C T 2813 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.64;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2846,291,0 chrII 156203 . C A 3136 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=23.23;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3169,324,0 chrII 156545 . T C 4257.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.39;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4257,450,0 chrII 156608 . C G 4164.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.7965;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.93;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4164,442,0 chrII 156902 . A C 3299.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.99;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3299,360,0 chrII 158456 . G A 4500.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.50;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4500,472,0 chrII 158475 . C T 4147.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.5402;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.91;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4147,427,0 chrII 158591 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.9643;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=23.29;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2968,309,0 chrII 158606 . T C 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.148;DP=142;Dels=0.00;FS=5.138;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-0.602;QD=19.88;ReadPosRankSum=3.396;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:4,137:142:99:2856,309,0 chrII 158800 . G T 4344.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.84;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4344,460,0 chrII 158803 . A G 4490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=223;Dels=0.00;FS=4.226;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=-0.822;QD=20.13;ReadPosRankSum=1.716;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:1,217:223:99:4490,472,0 chrII 158953 . G A 8203.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=14.0590;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.12;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,312:314:99:8203,850,0 chrII 159139 . T G 7631.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=20.7128;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.147;QD=21.08;ReadPosRankSum=1.860;SB=-3.912e+03 GT:AD:DP:GQ:PL 1/1:2,356:362:99:7631,820,0 chrII 159397 . T C 3851.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=17.75;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,213:217:99:3851,411,0 chrII 159427 . A G 5067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.519;DP=257;Dels=0.00;FS=19.392;HaplotypeScore=20.4572;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.165;QD=19.72;ReadPosRankSum=3.093;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:5,251:257:99:5067,544,0 chrII 159595 . T C 5346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=242;Dels=0.00;FS=2.985;HaplotypeScore=11.0479;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.411;QD=22.09;ReadPosRankSum=2.409;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:2,240:242:99:5346,568,0 chrII 159857 . C G 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.648;DP=164;Dels=0.00;FS=2.362;HaplotypeScore=16.2148;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;MQRankSum=1.438;QD=14.51;ReadPosRankSum=-2.969;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:3,160:164:99:2413,261,0 chrII 160143 . T G 2948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.167;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.479;QD=20.76;ReadPosRankSum=1.708;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2981,318,0 chrII 160200 . A T 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.639;QD=16.19;ReadPosRankSum=1.516;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1879,198,0 chrII 160664 . C A 9106.01 filter AC=2;AF=1.00;AN=2;DP=378;Dels=0.00;FS=0.000;HaplotypeScore=22.6617;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.09;SB=-4.620e+03 GT:AD:DP:GQ:PL 1/1:0,375:378:99:9106,928,0 chrII 160810 . T G 6128.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=15.9684;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.95;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6128,646,0 chrII 161272 . C T 3003 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3036,313,0 chrII 161484 . T G 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.120;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5134;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.650;QD=23.07;ReadPosRankSum=2.052;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2778,300,0 chrII 161687 . T C 3488.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3488,375,0 chrII 162234 . T C 4785.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.75;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4785,534,0 chrII 162251 . A G 5092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=232;Dels=0.00;FS=6.191;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.825;QD=21.95;ReadPosRankSum=2.428;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:2,230:232:99:5092,564,0 chrII 162420 . T C 4613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=206;Dels=0.00;FS=3.118;HaplotypeScore=10.9414;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.411;QD=22.39;ReadPosRankSum=1.698;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4613,490,0 chrII 163854 . T C 4556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=192;Dels=0.00;FS=3.369;HaplotypeScore=16.3840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.072;QD=23.73;ReadPosRankSum=1.695;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:1,188:192:99:4556,484,0 chrII 163967 . A G 3359.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.0683;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.65;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3359,357,0 chrII 163989 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.54;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3189,342,0 chrII 164060 . A G 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.690;QD=23.17;ReadPosRankSum=1.704;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2906,306,0 chrII 164468 . A G 2735 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.5579;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.18;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2768,294,0 chrII 165525 . G A 3757.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.84;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3757,402,0 chrII 165622 . A G 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.3770;MLEAC=2;MLEAF=1.00;MQ=60.01;MQ0=0;MQRankSum=-0.660;QD=21.62;ReadPosRankSum=1.632;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3038,324,0 chrII 165729 . T C 2472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.081;DP=115;Dels=0.00;FS=2.591;HaplotypeScore=7.2169;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.460;QD=21.50;ReadPosRankSum=2.829;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:3,109:115:99:2505,279,0 chrII 165760 . C T 1932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.3321;MLEAC=2;MLEAF=1.00;MQ=61.36;MQ0=0;MQRankSum=-0.638;QD=22.73;ReadPosRankSum=2.361;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:2,82:85:99:1965,210,0 chrII 165927 . C T 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;DP=76;Dels=0.01;FS=95.189;HaplotypeScore=4.1212;MLEAC=1;MLEAF=0.500;MQ=52.90;MQ0=0;MQRankSum=1.397;QD=0.70;ReadPosRankSum=-4.481;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,26:75:83:83,0,338 chrII 166364 . T G 1083 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1116,114,0 chrII 166572 . C T 2048 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.98;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2081,219,0 chrII 168065 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=143;Dels=0.00;FS=2.625;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.146;QD=24.89;ReadPosRankSum=2.415;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3559,372,0 chrII 168194 . G A 3796.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4756;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.87;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3796,394,0 chrII 168467 . T G 3180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.887;QD=24.65;ReadPosRankSum=1.705;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:3213,348,0 chrII 170048 . A T 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.155;QD=24.30;ReadPosRankSum=1.706;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3240,339,0 chrII 170539 . A G 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=142;Dels=0.00;FS=3.041;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.724;QD=24.51;ReadPosRankSum=2.328;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3481,387,0 chrII 170790 . T C 4501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=184;Dels=0.00;FS=7.002;HaplotypeScore=11.3759;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.483;QD=24.46;ReadPosRankSum=2.302;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:4501,498,0 chrII 171528 . T G 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.093;QD=24.46;ReadPosRankSum=1.705;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3237,342,0 chrII 172028 . G C 3362.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=20.50;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3362,369,0 chrII 172038 . T A 3589.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.75;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3589,384,0 chrII 172081 . A T 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-1.128;QD=22.69;ReadPosRankSum=1.712;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3948,406,0 chrII 172113 . T C 4364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=176;Dels=0.00;FS=8.645;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=-0.246;QD=24.80;ReadPosRankSum=2.422;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:4364,465,0 chrII 172141 . G A 3872.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=24.05;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3872,411,0 chrII 172152 . G A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=22.93;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3486,375,0 chrII 172183 . G A 2885 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1837;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=23.08;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2918,309,0 chrII 172223 . A G 2480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=113;Dels=0.00;FS=2.599;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-0.599;QD=21.95;ReadPosRankSum=2.319;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2513,264,0 chrII 172245 . C T 2364 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=20.38;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2397,258,0 chrII 172262 . A G 2399 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=20.16;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2432,258,0 chrII 172301 . T C 2395 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;QD=17.61;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2428,267,0 chrII 172322 . G T 2136 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=16.69;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2169,237,0 chrII 172323 . T A 2124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;MQRankSum=-1.512;QD=16.59;ReadPosRankSum=1.705;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2157,234,0 chrII 172338 . T G 2347 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.5465;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=17.92;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2380,258,0 chrII 172488 . A C 2814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-0.273;QD=24.26;ReadPosRankSum=1.702;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2847,300,0 chrII 173028 . T C 4320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=199;Dels=0.00;FS=2.556;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.419;QD=21.71;ReadPosRankSum=2.934;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:4320,454,0 chrII 173043 . A G 4430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=204;Dels=0.00;FS=5.315;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-1.562;QD=21.72;ReadPosRankSum=1.698;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4430,472,0 chrII 175625 . G A 5796.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=16.3151;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.56;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5796,604,0 chrII 176084 . T C 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=138;Dels=0.00;FS=3.042;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.526;QD=21.48;ReadPosRankSum=2.271;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2997,321,0 chrII 176684 . C T 3643.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.13;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3643,387,0 chrII 177622 . G A 3896.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.66;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3896,397,0 chrII 178351 . C T 4429.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.0515;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.20;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,177:183:99:4429,457,0 chrII 180633 . A G 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.419;QD=21.82;ReadPosRankSum=1.714;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4168,442,0 chrII 180832 . G T 3479.01 SnpCluster AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=19.99;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3479,358,0 chrII 180833 . G C 3434.01 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=19.85;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3434,363,0 chrII 180834 . A C 3400.01 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=19.77;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3400,363,0 chrII 181291 . C A 4891.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=18.4481;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4891,525,0 chrII 181425 . A C 4441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=190;Dels=0.00;FS=3.199;HaplotypeScore=17.3832;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.811;QD=23.37;ReadPosRankSum=1.695;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4441,469,0 chrII 181635 . C T 4600.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=23.00;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4600,472,0 chrII 181646 . C T 4379.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.9789;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.68;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4379,454,0 chrII 181705 . C G 3659.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.57;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,181:187:99:3659,393,0 chrII 181873 . A G 6280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=281;Dels=0.00;FS=9.766;HaplotypeScore=20.3999;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.325;QD=22.35;ReadPosRankSum=2.432;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:2,274:281:99:6280,699,0 chrII 182128 . T C 6532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=277;Dels=0.00;FS=10.744;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.301;QD=23.58;ReadPosRankSum=2.960;SB=-3.255e+03 GT:AD:DP:GQ:PL 1/1:3,274:277:99:6532,691,0 chrII 182436 . T C 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=3.586;HaplotypeScore=8.2375;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.075;QD=22.36;ReadPosRankSum=1.707;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3118,345,0 chrII 183369 . T C 3321.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.55;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3321,345,0 chrII 183726 . T C 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=128;Dels=0.00;FS=4.136;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.586;QD=22.38;ReadPosRankSum=1.650;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2898,306,0 chrII 183810 . C T 3281.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.63;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3281,342,0 chrII 183889 . C T 2497 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.97;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2530,261,0 chrII 184144 . C A 2619 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.02;FS=0.000;HaplotypeScore=8.8991;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.97;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2652,273,0 chrII 184218 . T A 1474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=90;Dels=0.00;FS=2.953;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=-0.014;QD=16.38;ReadPosRankSum=2.368;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1507,165,0 chrII 184236 . G C 1680 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=16.63;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1713,180,0 chrII 184249 . T C 1723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=2.584;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-0.055;QD=15.52;ReadPosRankSum=2.361;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:1756,189,0 chrII 184343 . T C 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=125;Dels=0.00;FS=2.595;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.427;QD=24.18;ReadPosRankSum=2.912;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:3056,327,0 chrII 184932 . A C 3927.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=24.24;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3927,414,0 chrII 184941 . T A 3844.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.35;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3844,397,0 chrII 185478 . C G 2150 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.12;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,90:93:99:2183,234,0 chrII 185922 . A G 2713 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2746,291,0 chrII 186322 . T C 4893.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.9825;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.65;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4893,546,0 chrII 186469 . C T 4629.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.3477;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.26;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4629,475,0 chrII 186555 . A G 4245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=176;Dels=0.00;FS=6.670;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.092;QD=24.12;ReadPosRankSum=2.421;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:2,172:176:99:4245,450,0 chrII 186623 . C T 3712.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.4442;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.77;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3712,382,0 chrII 186648 . C G 3572.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.61;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3572,387,0 chrII 186709 . A T 4279.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=23.91;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4279,439,0 chrII 186753 . G A 3852.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=23.35;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3852,405,0 chrII 186759 . G A 3712.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=23.79;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3712,382,0 chrII 186778 . A G 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=155;Dels=0.00;FS=2.948;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-1.544;QD=21.22;ReadPosRankSum=2.385;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:2,150:155:99:3289,342,0 chrII 186915 . T C 4281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.4260;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.083;QD=22.89;ReadPosRankSum=1.658;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4281,462,0 chrII 187153 . G A 3557.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.4615;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.40;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3557,367,0 chrII 187552 . T A 2821 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2854,300,0 chrII 187714 . C T 2949 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2982,306,0 chrII 187744 . T C 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=123;Dels=0.00;FS=2.971;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.300;QD=24.13;ReadPosRankSum=2.409;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:3001,321,0 chrII 187873 . T C 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.752;DP=127;Dels=0.00;FS=5.963;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.624;QD=22.83;ReadPosRankSum=2.944;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:3,123:127:99:2932,321,0 chrII 187960 . T A 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.593;QD=22.30;ReadPosRankSum=1.661;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3278,357,0 chrII 188032 . G A 4041.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.1411;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.24;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4041,412,0 chrII 189209 . T A 4594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=4.903;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.819;QD=22.86;ReadPosRankSum=1.698;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4594,472,0 chrII 189223 . C T 4229.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.74;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4229,456,0 chrII 189576 . C T 4378.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.06;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4378,460,0 chrII 189673 . A G 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.3037;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.143;QD=20.15;ReadPosRankSum=1.709;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2995,330,0 chrII 190246 . C T 4504.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.8849;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.22;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4504,466,0 chrII 190452 . A G 4689.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.6019;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.55;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4689,501,0 chrII 191207 . T C 4003.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.7878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4003,420,0 chrII 191242 . C A 4236.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4236,433,0 chrII 192289 . G C 1791 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.84;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1824,204,0 chrII 193380 . A G 5302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.273;QD=21.12;ReadPosRankSum=1.718;SB=-2.890e+03 GT:AD:DP:GQ:PL 1/1:1,248:251:99:5302,562,0 chrII 193513 . C T 5367.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=15.4661;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=22.84;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5367,556,0 chrII 193534 . C T 4608.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=21.63;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4608,492,0 chrII 196066 . C T 2996 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.97;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3029,312,0 chrII 196145 . C A 3798.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3798,394,0 chrII 196549 . T A 4686.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.33;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4686,478,0 chrII 196681 . A G 5932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=250;Dels=0.00;FS=2.932;HaplotypeScore=14.1551;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.277;QD=23.73;ReadPosRankSum=2.420;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:2,247:250:99:5932,625,0 chrII 197148 . A G 3487.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3487,372,0 chrII 197464 . T C 2365 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.65;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2398,249,0 chrII 197614 . A T 553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.506;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.9664;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=0.635;QD=17.84;ReadPosRankSum=2.506;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:3,28:31:63:586,63,0 chrII 197616 . A T 548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-0.374;QD=17.68;ReadPosRankSum=1.954;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:2,29:31:63:581,63,0 chrII 199391 . A C 2619 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.12;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2652,288,0 chrII 200070 . G A 3802.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.0703;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.73;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3802,400,0 chrII 201350 . A G 4847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=3.638;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-1.682;QD=23.19;ReadPosRankSum=1.699;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4847,534,0 chrII 201363 . T C 4740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=207;Dels=0.00;FS=5.827;HaplotypeScore=9.0476;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.162;QD=22.90;ReadPosRankSum=2.936;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:3,202:207:99:4740,499,0 chrII 201611 . T C 5801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=257;Dels=0.00;FS=3.008;HaplotypeScore=14.6735;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.122;QD=22.57;ReadPosRankSum=2.325;SB=-3.172e+03 GT:AD:DP:GQ:PL 1/1:2,255:257:99:5801,616,0 chrII 201948 . G A 3691.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.4235;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.81;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3691,379,0 chrII 202227 . T A 5103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.1702;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.252;QD=25.52;ReadPosRankSum=1.697;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:5103,535,0 chrII 203005 . A G 4589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.446;QD=23.29;ReadPosRankSum=1.661;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:1,193:197:99:4589,504,0 chrII 203084 . G A 5320.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=15.8516;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.63;SB=-2.942e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5320,550,0 chrII 203566 . T C 2395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=1.566;QD=19.01;ReadPosRankSum=1.704;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2428,261,0 chrII 206044 . G C 3286.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=24.71;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3286,348,0 chrII 207220 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=136;Dels=0.00;FS=3.563;HaplotypeScore=10.7112;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.706;QD=24.48;ReadPosRankSum=1.706;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:3329,354,0 chrII 207859 . A G 4383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=3.184;HaplotypeScore=12.0236;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.184;QD=24.49;ReadPosRankSum=1.693;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4383,468,0 chrII 208024 . T C 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.502;QD=23.75;ReadPosRankSum=1.609;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4013,429,0 chrII 208580 . G A 4530.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=24.75;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4530,489,0 chrII 209637 . A G 4731.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.19;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4731,522,0 chrII 212438 . T C 2437 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.76;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2470,261,0 chrII 212804 . A G 1123 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=4.420;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=37.50;MQ0=0;MQRankSum=-1.231;QD=13.53;ReadPosRankSum=1.607;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1156,126,0 chrII 212805 . T C 1009 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=12.94;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1042,114,0 chrII 212806 . T A 1063 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=13.63;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1096,114,0 chrII 212809 . A C 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.711;DP=75;Dels=0.00;FS=2.019;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=34.24;MQ0=0;MQRankSum=-2.985;QD=0.32;ReadPosRankSum=3.138;SB=-2.700e+02 GT:AD:DP:GQ:PL 0/1:47,28:75:54:54,0,846 chrII 212810 . T C 1084 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=34.17;MQ0=0;MQRankSum=1.459;QD=14.26;ReadPosRankSum=1.687;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1117,117,0 chrII 212812 . G A 1099 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=34.17;MQ0=0;QD=14.46;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1132,117,0 chrII 212815 . G A 754.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;DP=94;Dels=0.00;FS=5.175;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=32.80;MQ0=0;MQRankSum=-1.317;QD=8.02;ReadPosRankSum=-1.809;SB=-3.500e+02 GT:AD:DP:GQ:PL 0/1:49,45:94:99:784,0,117 chrII 212818 . G A 169.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DP=95;Dels=0.00;FS=3.918;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=33.20;MQ0=0;MQRankSum=-0.358;QD=1.78;ReadPosRankSum=4.753;SB=-5.540e+02 GT:AD:DP:GQ:PL 0/1:40,53:95:99:199,0,604 chrII 212821 . T A 777 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=8.63;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:84:810,84,0 chrII 212824 . G A 137.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;DP=80;Dels=0.00;FS=4.209;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=35.91;MQ0=0;MQRankSum=-0.905;QD=1.71;ReadPosRankSum=-4.290;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:64,14:80:99:167,0,368 chrII 212825 . T G 133.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.995;DP=80;Dels=0.00;FS=4.111;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=35.91;MQ0=0;MQRankSum=-0.386;QD=1.66;ReadPosRankSum=-4.691;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:66,14:80:99:163,0,411 chrII 212882 . A G 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=184;Dels=0.00;FS=5.559;HaplotypeScore=3.6075;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=2.033;QD=18.46;ReadPosRankSum=2.962;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:3397,354,0 chrII 212886 . C G 3414.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.97;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3414,363,0 chrII 212964 . T C 5145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=231;Dels=0.00;FS=4.028;HaplotypeScore=19.0961;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-1.440;QD=22.27;ReadPosRankSum=1.717;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:1,224:231:99:5145,553,0 chrII 213058 . C T 4804.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=16.3293;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=24.51;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4804,502,0 chrII 213466 . A G 5955.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=18.3207;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.21;SB=-2.853e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5955,625,0 chrII 213728 . T G 4637.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.28;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4637,495,0 chrII 214371 . C T 3026 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.28;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3059,321,0 chrII 216541 . A C 4614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=229;Dels=0.00;FS=5.997;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.925;QD=20.15;ReadPosRankSum=2.969;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:3,225:229:99:4614,516,0 chrII 216547 . T A 4738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=217;Dels=0.00;FS=3.388;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=0.241;QD=21.83;ReadPosRankSum=1.716;SB=-2.746e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:4738,496,0 chrII 216631 . A G 4782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.058;QD=22.66;ReadPosRankSum=1.715;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,208:211:99:4782,502,0 chrII 217070 . C T 7578.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=19.0471;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-3.864e+03 GT:AD:DP:GQ:PL 1/1:0,310:311:99:7578,769,0 chrII 220122 . G A 2964 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.32;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2997,321,0 chrII 220136 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.4000;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.47;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3254,336,0 chrII 220331 . C T 4844.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=25.36;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4844,516,0 chrII 220405 . G A 5446.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.0855;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=25.21;SB=-2.981e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5446,568,0 chrII 220437 . A G 5057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=220;Dels=0.00;FS=3.130;HaplotypeScore=4.6348;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=0.236;QD=22.99;ReadPosRankSum=1.685;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:5057,535,0 chrII 220451 . T G 4270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.1412;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=-1.627;QD=21.35;ReadPosRankSum=1.697;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:1,197:200:99:4270,462,0 chrII 220745 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.42;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2830,297,0 chrII 220778 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=17.39;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2137,222,0 chrII 221037 . T C 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;QD=3.25;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:44,6,0 chrII 221256 . T G 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.889;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.46;MQ0=72;MQRankSum=1.108;QD=0.28;ReadPosRankSum=-0.295;SB=-6.738e-03 GT:AD:DP:GQ:PL 0/1:95,52:147:39:71,0,39 chrII 221268 . T G 45.09 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=11.96;MQ0=61;MQRankSum=0.331;QD=0.32;ReadPosRankSum=4.037;SB=-4.901e-02 GT:AD:DP:GQ:PL 0/1:81,59:141:14:75,0,14 chrII 221274 . T C 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=12.36;MQ0=52;MQRankSum=0.235;QD=0.33;ReadPosRankSum=5.507;SB=-6.684e-03 GT:AD:DP:GQ:PL 0/1:74,58:132:39:74,0,39 chrII 221316 . A G 63.18 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=15.84;MQ0=4;MQRankSum=-0.210;QD=0.94;ReadPosRankSum=-0.629;SB=-6.424e-01 GT:AD:DP:GQ:PL 0/1:6,61:67:11:93,0,11 chrII 221322 . T C 66.09 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.941;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=14.97;MQ0=4;MQRankSum=0.104;QD=1.03;ReadPosRankSum=-0.311;SB=0.545 GT:AD:DP:GQ:PL 0/1:5,57:64:14:96,0,14 chrII 221325 . C T 46.06 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.64;MQ0=4;MQRankSum=-0.568;QD=0.74;ReadPosRankSum=-0.322;SB=0.352 GT:AD:DP:GQ:PL 0/1:7,55:62:16:76,0,16 chrII 221362 . G C 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.66;MQ0=2;QD=0.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:6:57,6,0 chrII 221367 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.707;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.34;MQ0=2;MQRankSum=-3.137;QD=0.62;ReadPosRankSum=3.707;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,25:32:6:51,6,0 chrII 221487 . A C 665.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.257;DP=1000;DS;Dels=0.00;FS=240.183;HaplotypeScore=61.7228;MLEAC=1;MLEAF=0.500;MQ=20.73;MQ0=110;MQRankSum=1.440;QD=0.67;ReadPosRankSum=-0.180;SB=-1.410e+02 GT:AD:DP:GQ:PL 0/1:810,181:1000:99:695,0,15470 chrII 222103 . A G 85.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.624;DP=608;Dels=0.00;FS=1.938;HaplotypeScore=14.1963;MLEAC=1;MLEAF=0.500;MQ=4.25;MQ0=560;MQRankSum=1.295;QD=0.14;ReadPosRankSum=-0.432;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:451,152:608:99:115,0,252 chrII 222191 . G A 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.638;DP=1000;DS;Dels=0.00;FS=12.887;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.66;MQ0=637;MQRankSum=2.101;QD=0.01;ReadPosRankSum=1.039;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:868,119:1000:44:44,0,5504 chrII 225536 . A G 402 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.423;DP=199;Dels=0.00;FS=18.303;HaplotypeScore=16.3428;MLEAC=2;MLEAF=1.00;MQ=8.65;MQ0=150;MQRankSum=4.423;QD=2.02;ReadPosRankSum=4.423;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,190:199:48:435,48,0 chrII 226277 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.25;MQ0=9;QD=1.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,2:11:6:43,6,0 chrII 226842 . A T 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.10;MQ0=245;QD=0.18;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:245,5:250:9:78,9,0 chrII 226843 . G A 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.07;MQ0=249;QD=0.17;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:249,5:254:9:75,9,0 chrII 226848 . C T 53.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.33;MQ0=257;QD=0.20;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:255,10:266:9:86,9,0 chrII 226856 . C T 220.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.20;MQ0=271;QD=0.77;SB=-2.163e-02 GT:AD:DP:GQ:PL 1/1:270,13:284:27:253,27,0 chrII 226860 . A G 250 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.20;MQ0=271;QD=0.88;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:271,13:284:30:283,30,0 chrII 226862 . G T 219.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.114;DP=288;Dels=0.00;FS=44.335;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.27;MQ0=269;MQRankSum=2.236;QD=0.76;ReadPosRankSum=3.377;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:272,13:288:66:249,0,66 chrII 226864 . G T 205.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.354;DP=287;Dels=0.00;FS=53.085;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.91;MQ0=266;MQRankSum=0.905;QD=0.71;ReadPosRankSum=3.730;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:274,13:287:99:235,0,112 chrII 226865 . A G 202.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;DP=287;Dels=0.00;FS=53.085;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.91;MQ0=266;MQRankSum=0.905;QD=0.70;ReadPosRankSum=3.730;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:274,13:287:99:232,0,118 chrII 226877 . A T 186.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;DP=272;Dels=0.00;FS=63.048;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=10.21;MQ0=238;MQRankSum=1.444;QD=0.68;ReadPosRankSum=0.625;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:247,25:272:99:216,0,120 chrII 226878 . T A 155.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.537;DP=269;Dels=0.00;FS=63.048;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=10.26;MQ0=235;MQRankSum=1.444;QD=0.58;ReadPosRankSum=0.625;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:243,26:269:99:185,0,123 chrII 226887 . C T 209.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.381;DP=248;Dels=0.00;FS=63.048;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.69;MQ0=214;MQRankSum=1.444;QD=0.84;ReadPosRankSum=0.625;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:220,25:248:99:239,0,156 chrII 226900 . C T 206.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.084;DP=210;Dels=0.00;FS=63.048;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.61;MQ0=176;MQRankSum=1.444;QD=0.98;ReadPosRankSum=-1.405;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:181,25:210:99:236,0,133 chrII 226903 . T C 205.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;DP=204;Dels=0.00;FS=63.048;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.78;MQ0=170;MQRankSum=1.444;QD=1.00;ReadPosRankSum=-3.708;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:176,25:204:99:235,0,139 chrII 226906 . T A 186.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;DP=191;Dels=0.00;FS=63.048;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.18;MQ0=157;MQRankSum=1.444;QD=0.97;ReadPosRankSum=-3.708;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:163,28:191:99:216,0,141 chrII 226912 . A G 198.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;DP=171;Dels=0.00;FS=63.048;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.87;MQ0=137;MQRankSum=1.444;QD=1.16;ReadPosRankSum=-4.411;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:146,25:171:99:228,0,136 chrII 226926 . A G 163.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.979;DP=123;Dels=0.00;FS=59.428;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.48;MQ0=92;MQRankSum=1.414;QD=1.33;ReadPosRankSum=-4.330;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:101,22:123:99:193,0,140 chrII 226931 . C G 81.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;DP=109;Dels=0.00;FS=53.921;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.35;MQ0=82;MQRankSum=1.363;QD=0.74;ReadPosRankSum=-4.192;SB=-3.014e+00 GT:AD:DP:GQ:PL 0/1:86,18:109:99:111,0,142 chrII 226932 . T A 111.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.980;DP=104;Dels=0.00;FS=53.921;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.69;MQ0=77;MQRankSum=1.363;QD=1.07;ReadPosRankSum=-4.192;SB=-3.014e+00 GT:AD:DP:GQ:PL 0/1:84,20:104:99:141,0,152 chrII 226936 . C A 115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.826;DP=88;Dels=0.00;FS=53.921;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.97;MQ0=61;MQRankSum=1.363;QD=1.31;ReadPosRankSum=-4.192;SB=-3.014e+00 GT:AD:DP:GQ:PL 0/1:68,20:88:99:145,0,148 chrII 226979 . T C 602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.551;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=39.70;MQ0=0;MQRankSum=-2.218;QD=9.87;ReadPosRankSum=2.651;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:3,58:61:48:635,48,0 chrII 227201 . C T 3190 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=25.52;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3223,333,0 chrII 227328 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.46;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3153,333,0 chrII 227387 . A T 2656 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.37;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2689,282,0 chrII 227881 . T C 1955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=4.909;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.010;QD=20.36;ReadPosRankSum=1.696;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1988,210,0 chrII 228106 . T C 2301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=102;Dels=0.00;FS=2.993;HaplotypeScore=7.4705;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.760;QD=22.56;ReadPosRankSum=2.329;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2334,249,0 chrII 228645 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2920,300,0 chrII 229233 . C T 2994 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3027,321,0 chrII 230635 . C T 2950 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2983,312,0 chrII 234570 . G A 4718.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.7166;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.37;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4718,499,0 chrII 236256 . T A 2925 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2958,304,0 chrII 237732 . C G 2039 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=23.17;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2072,225,0 chrII 237735 . G A 2136 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=23.22;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2169,231,0 chrII 239108 . C A 3646.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3646,396,0 chrII 239528 . A C 3850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=171;Dels=0.00;FS=8.104;HaplotypeScore=11.8712;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.508;QD=22.51;ReadPosRankSum=2.420;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:2,165:171:99:3850,414,0 chrII 239951 . A G 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=158;Dels=0.00;FS=2.661;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.088;QD=24.04;ReadPosRankSum=2.418;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3798,400,0 chrII 242129 . G A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.9314;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.37;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3323,345,0 chrII 242231 . C T 4929.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.9424;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.89;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4929,514,0 chrII 246026 . A T 8806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=348;Dels=0.00;FS=7.940;HaplotypeScore=26.4458;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.911;QD=25.30;ReadPosRankSum=2.386;SB=-3.969e+03 GT:AD:DP:GQ:PL 1/1:2,346:348:99:8806,913,0 chrII 248659 . G A 2489 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.40;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2522,261,0 chrII 248918 . C T 3821.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.64;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3821,385,0 chrII 249227 . T C 4086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.7671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.910;QD=23.08;ReadPosRankSum=1.693;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4086,432,0 chrII 249663 . T C 3733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.383;DP=162;Dels=0.00;FS=14.433;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.103;QD=23.04;ReadPosRankSum=3.361;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:4,157:162:99:3733,405,0 chrII 252044 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.54;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3981,409,0 chrII 252127 . C T 3863.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.58;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3863,400,0 chrII 252493 . G A 4360.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.32;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4360,465,0 chrII 252589 . T C 5349.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.6146;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.00;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5349,565,0 chrII 253219 . G A 2831 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2864,294,0 chrII 253367 . G T 4361.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4361,463,0 chrII 254333 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=153;Dels=0.00;FS=3.594;HaplotypeScore=6.6228;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.608;QD=22.42;ReadPosRankSum=1.686;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3431,360,0 chrII 254349 . C T 3705.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=24.22;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3705,376,0 chrII 254395 . T A 4268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=194;Dels=0.00;FS=10.391;HaplotypeScore=9.4664;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=1.374;QD=22.00;ReadPosRankSum=2.361;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4268,451,0 chrII 254436 . T C 4313.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.5594;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=22.35;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4313,477,0 chrII 254460 . T C 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.832;DP=175;Dels=0.01;FS=0.000;HaplotypeScore=17.3172;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=0.099;QD=19.32;ReadPosRankSum=0.273;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3381,294,0 chrII 254491 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=148;Dels=0.00;FS=3.454;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.457;QD=21.74;ReadPosRankSum=1.708;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,143:148:99:3250,345,0 chrII 254499 . C T 3188 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.45;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3221,331,0 chrII 254815 . C T 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.3777;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-0.836;QD=21.34;ReadPosRankSum=-1.151;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3084,316,0 chrII 254834 . A G 2704 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=19.18;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2737,288,0 chrII 254899 . T A 2970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=136;Dels=0.00;FS=10.707;HaplotypeScore=7.4146;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-1.166;QD=21.84;ReadPosRankSum=2.070;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3003,321,0 chrII 254913 . A G 3063 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.52;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3096,339,0 chrII 255127 . A G 1936 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.33;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1969,213,0 chrII 255152 . A G 1662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=71;Dels=0.00;FS=3.411;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.917;QD=23.41;ReadPosRankSum=1.681;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,68:71:99:1695,177,0 chrII 255469 . G A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.61;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3396,349,0 chrII 255960 . A G 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=133;Dels=0.00;FS=6.118;HaplotypeScore=12.0816;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.611;QD=21.08;ReadPosRankSum=2.932;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2836,312,0 chrII 258153 . T C 4541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=194;Dels=0.00;FS=6.009;HaplotypeScore=9.0115;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.162;QD=23.41;ReadPosRankSum=2.807;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:3,190:194:99:4541,481,0 chrII 258269 . C A 4707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.1860;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.907;QD=24.77;ReadPosRankSum=0.724;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4707,501,0 chrII 258824 . T C 2716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.389;QD=24.25;ReadPosRankSum=1.701;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2749,288,0 chrII 259330 . G A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.9260;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=23.23;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3972,409,0 chrII 259543 . C T 2706 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=42.66;MQ0=0;QD=23.95;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2739,282,0 chrII 259815 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.84;MQ0=12;QD=1.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:11,4:15:6:52,6,0 chrII 265294 . G A 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=2.61;MQ0=165;MQRankSum=1.537;QD=0.19;ReadPosRankSum=0.406;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:168,3:171:9:65,9,0 chrII 265306 . T A 42.09 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;DP=159;Dels=0.00;FS=2.963;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=4.49;MQ0=145;MQRankSum=0.933;QD=0.26;ReadPosRankSum=-0.267;SB=0.077 GT:AD:DP:GQ:PL 0/1:148,10:159:14:72,0,14 chrII 265334 . A G 305 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.63;MQ0=104;QD=2.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:91,35:127:39:338,39,0 chrII 265343 . T C 303 filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.45;MQ0=83;QD=2.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:66,39:106:39:336,39,0 chrII 265394 . T G 445 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=14.95;MQ0=28;QD=8.40;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:1,51:53:57:478,57,0 chrII 265440 . A G 219 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.23;MQ0=11;QD=9.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,19:22:33:252,33,0 chrII 265446 . T C 213 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.02;MQ0=4;QD=14.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,13:15:33:246,33,0 chrII 265449 . C T 216 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.02;MQ0=4;QD=14.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,13:15:33:249,33,0 chrII 265710 . G C 4113.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=25.08;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4113,441,0 chrII 266339 . T A 1432 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=23.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1465,150,0 chrII 266358 . C T 1306 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=21.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1339,138,0 chrII 266575 . A G 3114 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=25.52;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3147,330,0 chrII 266766 . C T 3681.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.48;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3681,379,0 chrII 267051 . C G 4323.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.75;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,185:190:99:4323,465,0 chrII 267510 . C T 2662 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.15;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2695,276,0 chrII 267525 . T A 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=4.586;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=0.798;QD=23.72;ReadPosRankSum=-0.587;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2761,282,0 chrII 267686 . A G 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=153;Dels=0.00;FS=3.465;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.447;QD=25.14;ReadPosRankSum=1.686;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3847,405,0 chrII 268100 . G A 4576.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=15.5633;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.96;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4576,489,0 chrII 268167 . C T 4655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=201;Dels=0.00;FS=2.927;HaplotypeScore=6.6988;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-0.919;QD=23.16;ReadPosRankSum=1.475;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4655,478,0 chrII 268175 . C T 4379.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.2499;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.68;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4379,445,0 chrII 268270 . A G 4060.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4060,430,0 chrII 268319 . A G 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=19.0783;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.471;QD=22.72;ReadPosRankSum=1.713;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4226,459,0 chrII 268398 . G C 4887.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=21.2291;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.32;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4887,523,0 chrII 268644 . G T 4759.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.9887;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.03;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4759,490,0 chrII 268724 . T C 4016.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=24.05;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4016,426,0 chrII 268895 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=20.81;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3308,340,0 chrII 268913 . G A 2657 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=16.71;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2690,294,0 chrII 268925 . C T 2396 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;QD=14.61;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2429,252,0 chrII 268930 . A G 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=4.883;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;MQRankSum=-0.386;QD=14.54;ReadPosRankSum=1.644;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:2345,249,0 chrII 268949 . T C 2157 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.5184;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=13.57;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2190,243,0 chrII 269013 . G A 3723.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.8407;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=18.43;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:3723,402,0 chrII 269025 . G T 3817.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=17.59;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:3817,394,0 chrII 269029 . C A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=17.13;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:3648,373,0 chrII 269036 . C A 3607.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=17.51;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:3607,367,0 chrII 269402 . G A 5261.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.07;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5261,576,0 chrII 269600 . T C 4443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=4.963;HaplotypeScore=14.1600;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.403;QD=24.02;ReadPosRankSum=1.676;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4443,469,0 chrII 269653 . C T 3401.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=22.3293;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.24;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3401,354,0 chrII 269846 . C A 4274.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.86;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4274,448,0 chrII 269904 . T C 7051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=310;Dels=0.00;FS=7.473;HaplotypeScore=9.9488;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=2.068;QD=22.75;ReadPosRankSum=2.426;SB=-3.617e+03 GT:AD:DP:GQ:PL 1/1:2,307:310:99:7051,771,0 chrII 269983 . A G 3754.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=5.444;DP=197;Dels=0.00;FS=21.290;HaplotypeScore=1.9085;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;MQRankSum=-2.457;QD=19.06;ReadPosRankSum=5.509;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:11,186:197:99:3754,408,0 chrII 269986 . G A 3752.01 SnpCluster AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=21.08;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3752,399,0 chrII 269987 . C T 3740.01 SnpCluster AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=21.25;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3740,393,0 chrII 270121 . C T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.96;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3393,354,0 chrII 270191 . G A 4688.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.6824;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=23.92;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4688,487,0 chrII 270207 . A G 4289.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=2.8608;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=21.77;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4289,456,0 chrII 270213 . T C 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.0874;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;MQRankSum=0.250;QD=20.93;ReadPosRankSum=1.715;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4374,463,0 chrII 270429 . A G 384.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721;DP=330;Dels=0.00;FS=13.047;HaplotypeScore=16.2481;MLEAC=1;MLEAF=0.500;MQ=49.20;MQ0=0;MQRankSum=-0.195;QD=1.16;ReadPosRankSum=-6.790;SB=-1.450e+02 GT:AD:DP:GQ:PL 0/1:266,63:330:99:414,0,4531 chrII 270471 . G A 1118.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.656;DP=270;Dels=0.00;FS=41.459;HaplotypeScore=10.7423;MLEAC=1;MLEAF=0.500;MQ=49.53;MQ0=0;MQRankSum=-8.388;QD=4.14;ReadPosRankSum=-2.888;SB=-8.970e+02 GT:AD:DP:GQ:PL 0/1:151,119:270:99:1148,0,2592 chrII 270474 . C G 963.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;DP=270;Dels=0.00;FS=42.473;HaplotypeScore=4.9401;MLEAC=1;MLEAF=0.500;MQ=50.24;MQ0=0;MQRankSum=-7.527;QD=3.57;ReadPosRankSum=-3.279;SB=-7.140e+02 GT:AD:DP:GQ:PL 0/1:158,110:270:99:993,0,2809 chrII 270489 . A C 425.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.048;DP=266;Dels=0.00;FS=53.303;HaplotypeScore=3.3555;MLEAC=1;MLEAF=0.500;MQ=51.48;MQ0=0;MQRankSum=-8.580;QD=1.60;ReadPosRankSum=-6.056;SB=-3.030e+02 GT:AD:DP:GQ:PL 0/1:192,73:266:99:455,0,3800 chrII 270492 . T C 278.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;DP=264;Dels=0.00;FS=44.492;HaplotypeScore=2.5668;MLEAC=1;MLEAF=0.500;MQ=51.61;MQ0=0;MQRankSum=-9.571;QD=1.05;ReadPosRankSum=-6.784;SB=-2.660e+02 GT:AD:DP:GQ:PL 0/1:196,68:264:99:308,0,3616 chrII 270495 . C T 121.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.215;DP=266;Dels=0.00;FS=40.205;HaplotypeScore=2.5668;MLEAC=1;MLEAF=0.500;MQ=51.98;MQ0=0;MQRankSum=-9.220;QD=0.45;ReadPosRankSum=-7.610;SB=-1.700e+02 GT:AD:DP:GQ:PL 0/1:201,65:266:99:151,0,3830 chrII 270573 . T C 4697.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=19.8568;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=20.97;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4697,496,0 chrII 271107 . T G 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.272;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.533;QD=24.77;ReadPosRankSum=3.386;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:4,119:123:99:3080,327,0 chrII 271598 . C T 4585.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4585,490,0 chrII 271847 . C T 3131 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3164,342,0 chrII 271912 . G A 2947 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.99;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2980,306,0 chrII 271984 . C A 1725 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.7056;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=15.97;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1758,186,0 chrII 273772 . T C 2880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=126;Dels=0.00;FS=4.248;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.928;QD=22.86;ReadPosRankSum=1.704;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2913,309,0 chrII 273781 . A G 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.606;QD=21.92;ReadPosRankSum=1.703;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2663,291,0 chrII 273905 . A G 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.717;QD=22.63;ReadPosRankSum=1.627;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2296,240,0 chrII 273923 . A G 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=3.045;HaplotypeScore=6.3919;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=0.808;QD=22.41;ReadPosRankSum=2.397;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:2,91:94:99:2140,234,0 chrII 274076 . G C 2210 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9680;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=23.02;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2243,234,0 chrII 274152 . T C 1276 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=19.33;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1309,138,0 chrII 274162 . T C 1046 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=0;QD=17.43;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1079,123,0 chrII 274206 . T G 405 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;QD=10.95;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,35:37:48:438,48,0 chrII 274209 . C T 400 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=13.6489;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=12.12;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:45:433,45,0 chrII 274212 . A C 330 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=15.5095;MLEAC=2;MLEAF=1.00;MQ=33.58;MQ0=0;MQRankSum=-1.418;QD=9.17;ReadPosRankSum=1.628;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:4,32:36:39:363,39,0 chrII 274224 . C T 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;DP=42;Dels=0.00;FS=5.269;HaplotypeScore=30.5309;MLEAC=1;MLEAF=0.500;MQ=39.32;MQ0=0;MQRankSum=-0.572;QD=0.48;ReadPosRankSum=1.690;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:18,24:42:50:50,0,71 chrII 274298 . T A 820 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=20.50;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:87:853,87,0 chrII 274303 . T A 806 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=21.2632;MLEAC=2;MLEAF=1.00;MQ=39.83;MQ0=0;QD=21.78;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:87:839,87,0 chrII 274372 . G A 691 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.05;FS=0.000;HaplotypeScore=3.6158;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=16.45;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:75:724,75,0 chrII 274375 . A G 623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=43;Dels=0.00;FS=4.771;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;MQRankSum=-0.990;QD=14.49;ReadPosRankSum=1.650;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:1,41:43:72:656,72,0 chrII 274439 . T C 1407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.268;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-0.410;QD=21.00;ReadPosRankSum=3.215;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:4,63:67:99:1440,156,0 chrII 274460 . T C 1804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.417;QD=24.38;ReadPosRankSum=2.317;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1837,192,0 chrII 274553 . A G 2226 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=25.01;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2259,243,0 chrII 274625 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.0735;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.99;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3182,336,0 chrII 274896 . G A 2764 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.18;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2797,285,0 chrII 274909 . G A 3067 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.58;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3100,324,0 chrII 275024 . T C 3484.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.7451;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,148:154:99:3484,372,0 chrII 275600 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.6228;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3404,357,0 chrII 275968 . T C 2910 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.87;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2943,321,0 chrII 276052 . T C 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.670;QD=23.13;ReadPosRankSum=1.670;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2600,279,0 chrII 276131 . T C 2491 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=21.85;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2524,267,0 chrII 276137 . T C 2601 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=20.98;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2634,288,0 chrII 276150 . T A 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=3.844;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.632;QD=18.39;ReadPosRankSum=1.705;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2369,252,0 chrII 276249 . C T 3567.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.3243;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.77;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3567,375,0 chrII 276361 . A G 2850 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.27;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2883,321,0 chrII 276526 . C T 4456.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.18;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4456,454,0 chrII 276676 . T C 3648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.478;DP=162;Dels=0.00;FS=7.707;HaplotypeScore=4.3501;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.372;QD=22.52;ReadPosRankSum=2.389;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3648,377,0 chrII 276799 . C G 2859 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,129:134:99:2892,318,0 chrII 277566 . G T 5183.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=16.8122;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.28;SB=-2.805e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:5183,532,0 chrII 278176 . G A 3814.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.7201;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.29;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3814,408,0 chrII 278796 . T C 3732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=165;Dels=0.00;FS=4.798;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.052;QD=22.62;ReadPosRankSum=1.711;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3732,417,0 chrII 278884 . G C 3118 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.80;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3151,339,0 chrII 278927 . A G 2785 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.94;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2818,309,0 chrII 278934 . A G 2963 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.11;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2996,318,0 chrII 279623 . T C 3907.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.58;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3907,429,0 chrII 279910 . T C 4697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.5815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.906;QD=23.72;ReadPosRankSum=1.662;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4697,493,0 chrII 280053 . C T 4817.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.9200;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.45;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4817,493,0 chrII 280259 . A C 3974.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3974,435,0 chrII 280418 . C T 3670.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.9431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3670,379,0 chrII 280684 . G A 3904.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.1939;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=25.35;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3904,406,0 chrII 280810 . A C 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=149;Dels=0.00;FS=7.399;HaplotypeScore=9.3752;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.798;QD=24.01;ReadPosRankSum=2.416;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:2,145:149:99:3578,378,0 chrII 280848 . C T 4002.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=24.70;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4002,412,0 chrII 280915 . G A 3543.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=22.28;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3543,372,0 chrII 280916 . T C 3598.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=22.35;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3598,378,0 chrII 281105 . A G 2349 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.03;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2382,255,0 chrII 281251 . A G 2445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=103;Dels=0.00;FS=3.554;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.713;QD=23.74;ReadPosRankSum=1.698;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2478,267,0 chrII 281281 . C T 2603 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.03;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2636,273,0 chrII 281665 . A G 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.180;DP=155;Dels=0.00;FS=7.065;HaplotypeScore=16.1417;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.403;QD=24.46;ReadPosRankSum=2.418;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3791,399,0 chrII 281826 . C T 4255.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.2259;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4255,459,0 chrII 282024 . C T 4209.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=16.8552;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.04;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4209,450,0 chrII 282128 . A G 3427.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3427,360,0 chrII 282738 . T C 4119.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4119,435,0 chrII 282868 . T C 4611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=188;Dels=0.00;FS=6.774;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-1.333;QD=24.53;ReadPosRankSum=2.410;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:4611,484,0 chrII 283018 . C T 4379.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.7725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.91;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4379,448,0 chrII 283056 . G A 4148.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.4762;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=24.12;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4148,430,0 chrII 283110 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=19.94;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3263,334,0 chrII 283119 . C T 3352.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=20.32;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3352,343,0 chrII 283464 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3440,366,0 chrII 283573 . C T 4070.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4070,421,0 chrII 283729 . G C 4910.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.80;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4910,523,0 chrII 284077 . G A 3002 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.45;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3035,312,0 chrII 284108 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.96;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2756,294,0 chrII 284437 . G T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.22;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3561,378,0 chrII 284890 . G A 2490 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.92;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2523,261,0 chrII 284893 . T C 2436 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.33;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2469,258,0 chrII 285592 . G A 3961.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.06;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3961,412,0 chrII 285666 . T C 3297.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.72;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3297,354,0 chrII 285688 . A G 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=151;Dels=0.00;FS=10.746;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.226;QD=22.15;ReadPosRankSum=2.952;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:3,144:151:99:3345,354,0 chrII 285829 . G A 3997.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.61;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:3997,432,0 chrII 286002 . G A 5252.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=18.2991;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.66;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5252,541,0 chrII 286036 . C T 5075.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.8471;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.17;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:5075,529,0 chrII 286327 . G A 4301.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.4899;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.38;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4301,456,0 chrII 286488 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.7436;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.99;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3380,351,0 chrII 286762 . A G 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=3.262;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.634;QD=25.21;ReadPosRankSum=1.683;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3605,378,0 chrII 286855 . C T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=20.95;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3415,349,0 chrII 286863 . C T 3499.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=19.66;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3499,366,0 chrII 286894 . A G 3556.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.12;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3556,381,0 chrII 286939 . C T 4144.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.52;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4144,433,0 chrII 287113 . G A 4871.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=17.6705;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=24.48;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4871,502,0 chrII 287483 . G A 4332.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.5717;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.07;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,176:180:99:4332,454,0 chrII 287512 . A G 4027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=3.034;HaplotypeScore=6.6766;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.683;QD=21.77;ReadPosRankSum=1.713;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4027,444,0 chrII 287551 . A G 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=181;Dels=0.00;FS=2.881;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.143;QD=20.54;ReadPosRankSum=2.422;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3718,408,0 chrII 287577 . C T 3823.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.7841;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.85;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3823,414,0 chrII 287818 . A G 3840.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.5385;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.59;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3840,411,0 chrII 288039 . G A 3027 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6996;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.28;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3060,321,0 chrII 288064 . C A 2941 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.80;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2974,309,0 chrII 288081 . A G 2912 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.8105;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.80;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2945,324,0 chrII 288119 . G A 2864 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=19.62;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,139:146:99:2897,309,0 chrII 288196 . A G 4246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=7.207;HaplotypeScore=3.5316;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.904;QD=20.71;ReadPosRankSum=1.681;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4246,465,0 chrII 288197 . T C 4269.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.3583;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.788;QD=20.93;ReadPosRankSum=2.425;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4269,454,0 chrII 288273 . G T 2943 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.73;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2976,306,0 chrII 288339 . A C 4723.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.9110;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.27;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4723,507,0 chrII 288498 . G A 2865 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.92;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2898,300,0 chrII 288671 . T A 2031 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.02;FS=0.000;HaplotypeScore=19.4075;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.91;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2064,219,0 chrII 288717 . C T 2355 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=20.84;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2388,252,0 chrII 288768 . C T 1856 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=7.8033;MLEAC=2;MLEAF=1.00;MQ=37.86;MQ0=0;QD=13.55;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:1889,201,0 chrII 288773 . T A 1813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=11.6529;MLEAC=2;MLEAF=1.00;MQ=36.35;MQ0=0;MQRankSum=-1.941;QD=12.42;ReadPosRankSum=2.416;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:2,143:145:99:1846,192,0 chrII 288780 . A G 1986 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=37.18;MQ0=0;QD=12.41;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2019,219,0 chrII 288800 . T C 2293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.73;MQ0=0;MQRankSum=-1.732;QD=12.07;ReadPosRankSum=1.714;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,189:190:99:2326,246,0 chrII 288809 . A C 2113 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.2464;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=10.95;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,191:193:99:2146,237,0 chrII 288880 . G A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.2771;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=20.01;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3321,340,0 chrII 288893 . C T 3597.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.9160;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=23.66;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3597,373,0 chrII 288970 . T C 4582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=215;Dels=0.00;FS=10.445;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;MQRankSum=-0.220;QD=21.31;ReadPosRankSum=2.902;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:3,212:215:99:4582,484,0 chrII 288986 . T C 5095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=241;Dels=0.00;FS=11.670;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;MQRankSum=-1.721;QD=21.14;ReadPosRankSum=2.896;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:3,238:241:99:5095,547,0 chrII 289069 . G C 3935.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=16.5309;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=23.28;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3935,420,0 chrII 289101 . G T 2812 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=24.03;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2845,294,0 chrII 289328 . A G 2599 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.60;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2632,282,0 chrII 289342 . T C 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=0.000;QD=21.65;ReadPosRankSum=1.700;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2393,255,0 chrII 289364 . A C 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=107;Dels=0.00;FS=3.638;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-0.533;QD=19.25;ReadPosRankSum=1.666;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,103:107:99:2093,225,0 chrII 289391 . C T 2196 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.61;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2229,237,0 chrII 289601 . C A 3774.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=27.15;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3774,388,0 chrII 289642 . A G 3402.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.6963;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=26.17;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3402,363,0 chrII 289723 . G A 2899 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.16;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2932,303,0 chrII 289906 . C T 3730.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.20;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3730,388,0 chrII 289966 . T C 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.412;QD=23.94;ReadPosRankSum=1.711;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:4046,432,0 chrII 290047 . A G 4382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=3.807;HaplotypeScore=9.1581;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.131;QD=25.04;ReadPosRankSum=1.692;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:4382,471,0 chrII 290362 . A G 3552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.961;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.5127;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.215;QD=21.27;ReadPosRankSum=-0.525;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3552,349,0 chrII 290565 . C A 2955 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2988,312,0 chrII 290619 . C T 3688.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3688,382,0 chrII 290696 . A G 4126.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4126,459,0 chrII 290804 . A G 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=165;Dels=0.00;FS=3.017;HaplotypeScore=13.5658;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.871;QD=23.36;ReadPosRankSum=2.360;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3855,423,0 chrII 291206 . G A 3719.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.39;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3719,385,0 chrII 291653 . A G 5724.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=12.6996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5724,610,0 chrII 292193 . C T 3104 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9402;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.99;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3137,324,0 chrII 292212 . A T 2965 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.5811;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.46;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2998,315,0 chrII 292257 . G A 2373 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.18;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,103:107:99:2406,246,0 chrII 292285 . T C 2759 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.86;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2792,294,0 chrII 292578 . C T 3998.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=12.3929;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=24.99;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3998,412,0 chrII 292600 . A G 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=157;Dels=0.00;FS=5.827;HaplotypeScore=122.8118;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.519;QD=22.80;ReadPosRankSum=2.955;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3580,384,0 chrII 292618 . T A 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=167;Dels=0.00;FS=3.602;HaplotypeScore=126.5451;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.367;QD=21.70;ReadPosRankSum=1.690;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3624,387,0 chrII 292676 . C T 4175.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.01;FS=0.000;HaplotypeScore=33.3982;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.69;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4175,430,0 chrII 292835 . C T 4176.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.6753;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=26.43;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4176,433,0 chrII 293020 . A C 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=146;Dels=0.00;FS=2.966;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.466;QD=23.22;ReadPosRankSum=2.382;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3390,363,0 chrII 293057 . C T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=14.3951;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.06;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3537,367,0 chrII 293099 . C T 3682.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=17.5743;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3682,379,0 chrII 293159 . T C 3649.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3649,399,0 chrII 293257 . C T 4124.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.17;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4124,427,0 chrII 293501 . A G 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.331;DP=177;Dels=0.00;FS=5.242;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.627;QD=20.44;ReadPosRankSum=3.400;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:4,173:177:99:3618,390,0 chrII 293504 . G A 3554.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=20.54;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3554,375,0 chrII 293963 . G C 3780.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=15.5771;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.33;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3780,399,0 chrII 294230 . C T 1712 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.14;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1745,183,0 chrII 295631 . G A 4117.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.36;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4117,424,0 chrII 295710 . C G 5055.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.66;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:5055,544,0 chrII 295912 . T C 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.01;FS=4.284;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.871;QD=21.56;ReadPosRankSum=1.713;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:3881,417,0 chrII 295913 . G A 4181.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.01;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=23.36;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4181,430,0 chrII 296073 . G C 1974 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2007,210,0 chrII 296126 . T C 425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.361;DP=57;Dels=0.00;FS=7.948;HaplotypeScore=28.7737;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;MQRankSum=3.046;QD=7.46;ReadPosRankSum=-1.698;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:8,48:57:57:458,57,0 chrII 296435 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.84;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2345,240,0 chrII 296627 . G A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.38;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3299,351,0 chrII 296774 . A G 3736.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=25.59;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3736,399,0 chrII 297131 . A T 3586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.4107;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.505;QD=25.99;ReadPosRankSum=1.656;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3586,378,0 chrII 297226 . G A 4658.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.1351;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4658,478,0 chrII 297266 . A G 4698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=194;Dels=0.00;FS=3.613;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.942;QD=24.22;ReadPosRankSum=1.660;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4698,507,0 chrII 297515 . G A 5745.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=17.2276;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5745,589,0 chrII 297606 . A G 6735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=292;Dels=0.00;FS=3.905;HaplotypeScore=8.2948;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.334;QD=23.07;ReadPosRankSum=1.708;SB=-3.104e+03 GT:AD:DP:GQ:PL 1/1:1,290:292:99:6735,756,0 chrII 298141 . C T 3357.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.98;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3357,343,0 chrII 298678 . A G 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=185;Dels=0.00;FS=2.847;HaplotypeScore=16.8195;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.493;QD=21.14;ReadPosRankSum=2.396;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:3910,414,0 chrII 298721 . G A 3063 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.12;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3096,321,0 chrII 298732 . A G 3024 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.57;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3057,321,0 chrII 298759 . T C 3313.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.97;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3313,363,0 chrII 298906 . A T 4348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.358;DP=173;Dels=0.00;FS=15.945;HaplotypeScore=8.2252;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.015;QD=25.13;ReadPosRankSum=3.369;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:4,169:173:99:4348,460,0 chrII 298966 . T C 2892 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.1797;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=23.90;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2925,309,0 chrII 298990 . G A 2275 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=23.70;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2308,234,0 chrII 299034 . A G 2374 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.2243;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.47;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2407,252,0 chrII 299174 . T C 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=0.254;QD=18.77;ReadPosRankSum=1.708;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:2754,297,0 chrII 299176 . C A 2772 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=19.52;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2805,291,0 chrII 299196 . T C 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=0.145;QD=19.54;ReadPosRankSum=1.706;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2593,270,0 chrII 299389 . A G 5185.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=25.54;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,199:203:99:5185,547,0 chrII 299462 . G A 5566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=13.1627;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-1.447;QD=23.99;ReadPosRankSum=1.102;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:5566,583,0 chrII 299524 . C T 4211.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=18.80;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4211,447,0 chrII 299803 . C A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.3273;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=24.50;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3553,364,0 chrII 299935 . C G 2763 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2796,297,0 chrII 300001 . A T 1693 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.65;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1726,177,0 chrII 300111 . G A 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.4988;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;MQRankSum=0.953;QD=24.19;ReadPosRankSum=-1.212;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,120:123:99:3008,324,0 chrII 300849 . C T 301.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;DP=146;Dels=0.00;FS=41.831;HaplotypeScore=18.0302;MLEAC=1;MLEAF=0.500;MQ=14.22;MQ0=87;MQRankSum=0.369;QD=2.06;ReadPosRankSum=-1.931;SB=-1.330e+02 GT:AD:DP:GQ:PL 0/1:55,90:146:99:331,0,143 chrII 301002 . T C 2082 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.16;MQ0=36;MQRankSum=-1.582;QD=14.77;ReadPosRankSum=2.356;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2115,231,0 chrII 301044 . C T 2166 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=25.84;MQ0=9;QD=20.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2199,225,0 chrII 301140 . G A 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.999;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;MQRankSum=1.288;QD=19.20;ReadPosRankSum=1.577;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3048,303,0 chrII 301182 . A G 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.012;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.9068;MLEAC=2;MLEAF=1.00;MQ=38.43;MQ0=2;MQRankSum=0.918;QD=20.09;ReadPosRankSum=-1.546;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3087,306,0 chrII 301324 . C T 2820 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9055;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=22.20;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2853,297,0 chrII 301399 . T C 1933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=-0.173;QD=16.11;ReadPosRankSum=1.646;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1966,210,0 chrII 301406 . T A 1779 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=15.34;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1812,195,0 chrII 301455 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.98;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2407,252,0 chrII 301569 . T C 4694.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.2610;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=25.10;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4694,499,0 chrII 301589 . G C 4466.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=24.27;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4466,469,0 chrII 301937 . T A 4198.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.13;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4198,453,0 chrII 301975 . C A 4480.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.8176;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.62;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4480,469,0 chrII 302088 . A G 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=145;Dels=0.00;FS=2.854;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.265;QD=19.84;ReadPosRankSum=2.347;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:2910,303,0 chrII 302104 . A G 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=1.034;QD=20.02;ReadPosRankSum=1.657;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2836,309,0 chrII 302245 . G C 3036 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.3727;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=19.46;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3069,324,0 chrII 302260 . T A 3142 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.8646;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=21.23;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3175,325,0 chrII 302285 . T C 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.5474;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=-0.918;QD=18.29;ReadPosRankSum=2.392;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3161,336,0 chrII 302360 . G A 4918.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.7084;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.11;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4918,502,0 chrII 302456 . T C 5526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=225;Dels=0.00;FS=2.843;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-1.326;QD=24.56;ReadPosRankSum=2.297;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5526,586,0 chrII 302473 . T C 5698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=236;Dels=0.00;FS=2.971;HaplotypeScore=8.4108;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=0.434;QD=24.14;ReadPosRankSum=2.408;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:2,233:236:99:5698,610,0 chrII 302822 . C T 6000.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=14.5292;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=24.59;SB=-3.244e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:6000,616,0 chrII 302839 . T G 4856.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.01;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4856,522,0 chrII 303121 . A G 3900.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=24.38;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3900,409,0 chrII 303138 . G A 3968.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.62;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3968,420,0 chrII 303237 . T C 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=117;Dels=0.00;FS=6.135;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-1.131;QD=24.15;ReadPosRankSum=2.887;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2858,300,0 chrII 303295 . T G 3076 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=24.81;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3109,327,0 chrII 303435 . T C 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-0.341;QD=22.62;ReadPosRankSum=1.703;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2702,285,0 chrII 303452 . G A 2814 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=23.07;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2847,289,0 chrII 303465 . T C 2560 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=21.33;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2593,279,0 chrII 303520 . T G 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;MQRankSum=0.394;QD=17.99;ReadPosRankSum=1.708;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2641,297,0 chrII 303528 . C G 2533 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=17.35;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:2566,273,0 chrII 303540 . C T 2718 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=19.14;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2751,282,0 chrII 304001 . T C 2673 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.3688;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.04;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2706,291,0 chrII 304221 . G C 3859.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.74;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3859,403,0 chrII 304314 . A G 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=193;Dels=0.00;FS=6.750;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.215;QD=22.59;ReadPosRankSum=2.399;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4359,492,0 chrII 304737 . A T 3625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.725;DP=160;Dels=0.00;FS=2.582;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.481;QD=22.66;ReadPosRankSum=2.943;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3625,384,0 chrII 304851 . C T 3318.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.70;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3318,354,0 chrII 305332 . G A 4963.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.66;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4963,534,0 chrII 306242 . T G 1945 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.31;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1978,222,0 chrII 306376 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.0790;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.51;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3432,354,0 chrII 306494 . C T 3521.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.33;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3521,361,0 chrII 306980 . A G 4088.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.77;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4088,444,0 chrII 307021 . G T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.35;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3448,357,0 chrII 307459 . G A 1105 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=14.73;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1138,123,0 chrII 307512 . G A 1685 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=80.6724;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=19.15;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1718,186,0 chrII 307537 . C T 1935 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=20.81;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1968,210,0 chrII 307597 . G A 2022 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=20.02;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2055,210,0 chrII 307613 . C A 2055 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.02;FS=0.000;HaplotypeScore=2.8799;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=18.51;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2088,216,0 chrII 307634 . T C 1830 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=17.94;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1863,204,0 chrII 307713 . C T 2039 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.80;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2072,225,0 chrII 307808 . C T 2193 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=21.29;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2226,225,0 chrII 307810 . A G 1978 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=19.39;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2011,219,0 chrII 307858 . A G 2266 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.37;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2299,255,0 chrII 307919 . C A 2593 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.57;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2626,270,0 chrII 307944 . T C 2140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=2.916;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;MQRankSum=-1.108;QD=17.69;ReadPosRankSum=2.409;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2173,231,0 chrII 307989 . T C 1947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.965;DP=140;Dels=0.00;FS=5.127;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.78;MQ0=0;MQRankSum=-0.619;QD=13.91;ReadPosRankSum=1.608;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:1980,192,0 chrII 307994 . C A 1965 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;QD=13.01;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:1998,210,0 chrII 308002 . T C 1867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;MQRankSum=-1.483;QD=12.20;ReadPosRankSum=1.687;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:1900,210,0 chrII 308006 . G A 2102 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.32;MQ0=0;QD=13.56;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2135,225,0 chrII 308083 . A G 3089 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.02;FS=0.000;HaplotypeScore=16.1017;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.91;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3122,333,0 chrII 308205 . A G 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.7086;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;MQRankSum=-0.723;QD=24.05;ReadPosRankSum=1.709;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3631,396,0 chrII 308422 . C T 2951 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2984,309,0 chrII 308477 . T C 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.1839;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.659;QD=23.15;ReadPosRankSum=1.708;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3311,360,0 chrII 308890 . A G 1921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.190;QD=23.14;ReadPosRankSum=1.649;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1954,207,0 chrII 309104 . C T 3745.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.7265;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.19;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3745,390,0 chrII 309178 . G A 4600.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.8766;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.99;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4600,472,0 chrII 309264 . C T 4472.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=20.0807;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4472,460,0 chrII 309603 . G A 6290.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=18.3733;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.96;SB=-2.974e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:6290,646,0 chrII 309822 . C T 8097.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=22.8068;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.61;SB=-3.664e+03 GT:AD:DP:GQ:PL 1/1:0,328:329:99:8097,841,0 chrII 309967 . T C 6225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.432;DP=276;Dels=0.00;FS=6.132;HaplotypeScore=10.6537;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.790;QD=22.55;ReadPosRankSum=2.253;SB=-3.651e+03 GT:AD:DP:GQ:PL 1/1:2,273:276:99:6225,658,0 chrII 310032 . A G 5611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=291;Dels=0.00;FS=2.659;HaplotypeScore=15.2754;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.646;QD=19.28;ReadPosRankSum=2.398;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:2,282:291:99:5611,618,0 chrII 310088 . C T 5597.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=9.6430;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.21;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:5597,580,0 chrII 310251 . C T 4579.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.5313;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=23.24;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4579,487,0 chrII 310571 . G A 3641.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.61;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3641,390,0 chrII 310706 . T C 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=16.4304;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.220;QD=24.16;ReadPosRankSum=1.690;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:4011,424,0 chrII 310972 . G C 3845.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.62;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3845,420,0 chrII 311366 . A C 4957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=208;Dels=0.00;FS=6.518;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.694;QD=23.83;ReadPosRankSum=2.390;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:2,205:208:99:4957,537,0 chrII 311676 . A G 2018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=107;Dels=0.01;FS=2.934;HaplotypeScore=97.4969;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-1.135;QD=18.86;ReadPosRankSum=2.402;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:2,101:106:99:2051,219,0 chrII 312029 . G A 3154 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.37;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3187,342,0 chrII 312167 . G A 4908.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.6147;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4908,514,0 chrII 312389 . T A 5007.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=16.1976;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:5007,532,0 chrII 312686 . A G 5127.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.6693;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5127,538,0 chrII 312995 . T C 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.241;QD=24.36;ReadPosRankSum=1.709;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3606,387,0 chrII 313154 . T C 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.834;QD=23.02;ReadPosRankSum=1.689;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3753,402,0 chrII 313283 . A G 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1017;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-1.429;QD=21.66;ReadPosRankSum=1.707;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3001,330,0 chrII 313427 . T C 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=143;Dels=0.00;FS=2.785;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.266;QD=24.41;ReadPosRankSum=2.398;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3490,372,0 chrII 313475 . A G 3348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=141;Dels=0.00;FS=2.519;HaplotypeScore=11.4190;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.819;QD=23.74;ReadPosRankSum=2.718;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:3,136:141:99:3348,360,0 chrII 313595 . T C 3654.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.20;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3654,393,0 chrII 313835 . G A 3594.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.5018;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.31;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3594,370,0 chrII 313868 . C T 3594.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.9991;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.96;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3594,375,0 chrII 313940 . T C 2838 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.26;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2871,303,0 chrII 314009 . C T 3773.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8667;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.88;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3773,399,0 chrII 314198 . A G 4920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=211;Dels=0.00;FS=3.331;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.287;QD=23.32;ReadPosRankSum=1.699;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4920,526,0 chrII 314258 . G A 3271.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3271,334,0 chrII 314330 . G A 3747.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.57;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3747,388,0 chrII 314492 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.87;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3117,319,0 chrII 314932 . A G 2293 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2326,255,0 chrII 315206 . G T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.0639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3665,396,0 chrII 315289 . A G 3086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.732;QD=23.92;ReadPosRankSum=1.652;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3119,333,0 chrII 315318 . T A 3120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.390;DP=130;Dels=0.00;FS=12.387;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.414;QD=24.00;ReadPosRankSum=3.363;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:4,126:130:99:3153,333,0 chrII 315469 . T C 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=131;Dels=0.00;FS=6.059;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.362;QD=24.05;ReadPosRankSum=2.916;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:3184,333,0 chrII 315559 . A T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.1273;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.67;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4005,415,0 chrII 315655 . T C 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=116;Dels=0.00;FS=3.245;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.486;QD=23.44;ReadPosRankSum=1.702;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2752,294,0 chrII 315988 . C T 3954.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.85;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3954,415,0 chrII 316012 . A G 4312.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.3706;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.06;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4312,454,0 chrII 316180 . A G 3498.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=19.6832;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.95;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3498,384,0 chrII 316739 . A T 1856 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=23.20;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1889,198,0 chrII 316758 . G A 1867 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;QD=22.77;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1900,204,0 chrII 316919 . G A 1485 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=19.29;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1518,156,0 chrII 316976 . A G 659 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=124.1461;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=0;QD=7.94;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:75:692,75,0 chrII 317339 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3235,336,0 chrII 317648 . A G 4198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.345;QD=23.32;ReadPosRankSum=1.616;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4198,462,0 chrII 317666 . C T 4281.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7264;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=23.52;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4281,459,0 chrII 317789 . T C 2983 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.86;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3016,336,0 chrII 317942 . T A 1814 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.60;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1847,189,0 chrII 317955 . C T 1742 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.51;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1775,186,0 chrII 318192 . G C 2435 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.3915;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=26.47;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2468,258,0 chrII 318225 . T C 2977 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.9915;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.60;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3010,321,0 chrII 318380 . A G 2796 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.50;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2829,312,0 chrII 318982 . C T 4314.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=25.08;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4314,445,0 chrII 319000 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=20.83;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3853,403,0 chrII 319018 . C T 4184.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.57;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4184,430,0 chrII 319087 . C T 5829.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=18.5149;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.79;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5829,607,0 chrII 319525 . T C 3126 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.41;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3159,348,0 chrII 319547 . T C 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.4698;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=0.212;QD=21.68;ReadPosRankSum=1.710;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3404,360,0 chrII 319717 . T C 4884.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.4793;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.92;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4884,534,0 chrII 320788 . A T 3894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=3.797;HaplotypeScore=7.0924;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.839;QD=23.74;ReadPosRankSum=1.711;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3894,408,0 chrII 320851 . T C 5407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=228;Dels=0.00;FS=3.186;HaplotypeScore=11.9171;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=23.71;ReadPosRankSum=1.717;SB=-2.830e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:5407,586,0 chrII 321262 . C T 2873 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.14;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2906,306,0 chrII 321445 . G C 3379.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,143:150:99:3379,369,0 chrII 321553 . G A 2438 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.16;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2471,255,0 chrII 321773 . C T 2805 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.02;FS=0.000;HaplotypeScore=13.9641;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.97;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2838,300,0 chrII 321857 . G T 2602 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=114.3194;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=18.99;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2635,276,0 chrII 321867 . C T 2385 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=112.1563;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=17.28;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2418,252,0 chrII 321906 . A G 2134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=126;Dels=0.00;FS=4.876;HaplotypeScore=4.2805;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;MQRankSum=-0.880;QD=16.94;ReadPosRankSum=1.705;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2167,228,0 chrII 322182 . A T 4689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=194;Dels=0.00;FS=7.094;HaplotypeScore=10.2647;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.639;QD=24.17;ReadPosRankSum=2.386;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4689,490,0 chrII 322610 . G C 3215.99 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.3768;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.75;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3249,345,0 chrII 322620 . G A 3111 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.7468;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.47;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3144,324,0 chrII 324730 . T C 5499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=229;Dels=0.00;FS=7.762;HaplotypeScore=8.4144;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.209;QD=24.01;ReadPosRankSum=2.417;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:5499,606,0 chrII 324953 . T C 4311.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.7564;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.30;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4311,462,0 chrII 325802 . T C 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=4.622;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.069;QD=20.84;ReadPosRankSum=1.645;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4189,445,0 chrII 325889 . C T 4064.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.4054;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.49;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4064,435,0 chrII 326118 . G A 3548.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=26.28;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3548,367,0 chrII 326179 . A G 2859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=131;Dels=0.00;FS=2.993;HaplotypeScore=8.5981;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=0.161;QD=21.82;ReadPosRankSum=2.412;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2892,303,0 chrII 326293 . A T 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=130;Dels=0.00;FS=3.748;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=1.353;QD=24.12;ReadPosRankSum=1.678;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3168,339,0 chrII 326339 . T C 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.430;QD=22.02;ReadPosRankSum=1.576;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2984,324,0 chrII 326357 . C T 3022 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.28;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3055,318,0 chrII 326394 . A G 3197 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=20.49;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3230,345,0 chrII 326411 . C T 3204 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=20.67;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3237,336,0 chrII 326592 . T A 2784 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=22.82;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2817,300,0 chrII 326660 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.9181;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=20.63;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,126:130:99:2715,279,0 chrII 326677 . C T 2457 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=18.34;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2490,258,0 chrII 326680 . C T 2292 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=17.36;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2325,249,0 chrII 326704 . G A 2198 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.33;MQ0=0;QD=15.26;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2231,228,0 chrII 326734 . T A 1919 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=0;QD=12.38;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:1952,204,0 chrII 326744 . G A 1952 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=32.20;MQ0=0;QD=12.59;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:1985,204,0 chrII 326754 . A G 1858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.401;DP=151;Dels=0.00;FS=17.217;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=32.56;MQ0=0;MQRankSum=-0.052;QD=12.30;ReadPosRankSum=3.401;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:4,147:151:99:1891,201,0 chrII 326757 . A T 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=4.454;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.41;MQ0=0;MQRankSum=-0.490;QD=11.86;ReadPosRankSum=1.708;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:1753,192,0 chrII 326765 . G T 1859 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=35.66;MQ0=0;QD=13.18;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1892,195,0 chrII 327179 . A G 3955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.279;QD=25.52;ReadPosRankSum=1.710;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3955,414,0 chrII 327672 . C T 2563 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=24.64;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2596,270,0 chrII 327908 . T C 3667.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3667,399,0 chrII 327972 . T C 3421.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3421,360,0 chrII 328525 . A G 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.3336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.431;QD=20.72;ReadPosRankSum=1.702;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2416,264,0 chrII 330636 . A G 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=4.021;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.699;QD=24.31;ReadPosRankSum=1.667;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2634,279,0 chrII 331253 . C T 3720.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3720,385,0 chrII 331350 . A G 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=152;Dels=0.00;FS=12.294;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.644;QD=23.34;ReadPosRankSum=2.940;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:3,147:152:99:3547,373,0 chrII 331446 . T A 3631.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.13;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3631,384,0 chrII 331580 . A G 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.3958;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.784;QD=17.35;ReadPosRankSum=1.714;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3297,348,0 chrII 331783 . G A 4250.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.88;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4250,439,0 chrII 331804 . A G 3962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=3.035;HaplotypeScore=3.5093;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.731;QD=22.64;ReadPosRankSum=1.672;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3962,418,0 chrII 332114 . A G 3402.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2532;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.63;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3402,369,0 chrII 332235 . G T 2627 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.10;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2660,273,0 chrII 332368 . T A 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=135;Dels=0.00;FS=5.143;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.620;QD=24.50;ReadPosRankSum=1.706;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3307,345,0 chrII 332412 . T C 2843 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=23.50;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2876,306,0 chrII 332422 . G T 2660 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=23.13;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2693,279,0 chrII 332654 . T C 3627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=-0.446;QD=21.59;ReadPosRankSum=1.691;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3627,387,0 chrII 332657 . T G 3607.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.09;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3607,376,0 chrII 332940 . C G 2827 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.62;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2860,303,0 chrII 333078 . T C 2845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=1.075;QD=24.53;ReadPosRankSum=1.702;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2878,306,0 chrII 333194 . G A 3444.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=26.70;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3444,355,0 chrII 333270 . A T 2684 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.65;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2717,276,0 chrII 333319 . T A 1955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=123;Dels=0.03;FS=6.908;HaplotypeScore=10.2426;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=0.920;QD=15.89;ReadPosRankSum=2.222;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:1988,204,0 chrII 333321 . G A 1910 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.02;FS=0.000;HaplotypeScore=10.0981;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=15.66;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1943,204,0 chrII 333382 . T A 4240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=187;Dels=0.00;FS=2.790;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.087;QD=22.67;ReadPosRankSum=2.423;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4240,439,0 chrII 335310 . A G 4988.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.0115;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.88;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4988,526,0 chrII 335919 . G A 6384.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=13.9578;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.46;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:6384,679,0 chrII 338142 . C T 3078 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.14;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3111,316,0 chrII 338664 . A T 5460.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=19.9518;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.05;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5460,574,0 chrII 339083 . T G 3746.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.7289;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.01;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3746,402,0 chrII 339200 . C T 3813.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.17;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3813,397,0 chrII 339511 . G A 4057.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.7665;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.29;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4057,444,0 chrII 339739 . T C 5680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=15.8971;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.030;QD=24.48;ReadPosRankSum=1.717;SB=-3.102e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5680,604,0 chrII 339902 . A G 3967.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=20.66;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3967,418,0 chrII 339903 . A G 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=192;Dels=0.00;FS=5.815;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.063;QD=20.35;ReadPosRankSum=2.901;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:3907,412,0 chrII 340737 . G A 3777.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.8077;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.37;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3777,394,0 chrII 340913 . T C 2732 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.58;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2765,297,0 chrII 341038 . C T 4225.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.28;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4225,453,0 chrII 341186 . T C 4479.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.1950;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.57;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4479,483,0 chrII 341233 . A G 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=155;Dels=0.00;FS=8.893;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.325;QD=22.91;ReadPosRankSum=2.386;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3551,393,0 chrII 341533 . A G 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=3.097;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=0.791;QD=24.73;ReadPosRankSum=1.709;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3734,396,0 chrII 341567 . A C 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=155;Dels=0.00;FS=14.402;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.861;QD=20.34;ReadPosRankSum=2.914;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:3,149:155:99:3186,345,0 chrII 341973 . C T 4808.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.8511;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=24.28;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4808,505,0 chrII 342023 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.56;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3598,373,0 chrII 342025 . G C 3666.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=21.44;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3666,387,0 chrII 342041 . A G 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=5.057;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.585;QD=19.13;ReadPosRankSum=1.622;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3037,324,0 chrII 342691 . G C 2602 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.65;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2635,279,0 chrII 342723 . C T 2625 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.65;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2658,273,0 chrII 343406 . C T 4358.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=23.18;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4358,448,0 chrII 343415 . G A 4329.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=21.97;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4329,451,0 chrII 343769 . T C 6382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=292;Dels=0.00;FS=7.400;HaplotypeScore=17.4955;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.764;QD=21.86;ReadPosRankSum=2.331;SB=-3.378e+03 GT:AD:DP:GQ:PL 1/1:2,288:292:99:6382,705,0 chrII 343845 . C T 4940.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:4940,511,0 chrII 344938 . C T 2692 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2725,282,0 chrII 345050 . C T 3078 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3111,319,0 chrII 345172 . C T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3335,340,0 chrII 345288 . A G 2067 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2100,225,0 chrII 345769 . A G 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-1.732;QD=20.74;ReadPosRankSum=1.708;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,141:146:99:3061,339,0 chrII 345781 . C T 3107 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=20.99;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3140,330,0 chrII 345849 . C A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.66;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3445,355,0 chrII 345853 . A C 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=156;Dels=0.00;FS=7.861;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=1.039;QD=21.43;ReadPosRankSum=2.418;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3343,357,0 chrII 345955 . C A 3522.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=25.90;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3522,361,0 chrII 346437 . C T 3551.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7163;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.01;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3551,378,0 chrII 347502 . A G 2651 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2684,297,0 chrII 347587 . A G 2527 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.05;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2560,273,0 chrII 347803 . T A 2885 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.53;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2918,300,0 chrII 347856 . T G 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.001;QD=24.01;ReadPosRankSum=1.700;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2674,282,0 chrII 347935 . T C 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.211;QD=25.37;ReadPosRankSum=1.676;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:3204,339,0 chrII 348820 . G A 4171.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4171,430,0 chrII 349229 . G A 4000.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.8863;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=23.95;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4000,429,0 chrII 349415 . A T 2317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.145;DP=119;Dels=0.00;FS=8.243;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=-1.420;QD=19.47;ReadPosRankSum=3.353;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:4,115:119:99:2350,243,0 chrII 349446 . A C 2072 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=91.8183;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;QD=18.50;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2105,225,0 chrII 349467 . G A 1744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.189;DP=120;Dels=0.00;FS=3.680;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;MQRankSum=-1.383;QD=14.53;ReadPosRankSum=-0.422;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1777,168,0 chrII 349482 . G A 1800 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;QD=15.13;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1833,192,0 chrII 349506 . A G 1649 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;QD=15.13;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1682,180,0 chrII 349738 . G A 1927 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=11.6755;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=22.41;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1960,204,0 chrII 349920 . G A 2600 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=27.37;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2633,270,0 chrII 349989 . C T 3101 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;QD=24.61;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3134,333,0 chrII 350030 . G A 3987.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;QD=23.05;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3987,429,0 chrII 350081 . T C 5461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-0.062;QD=25.17;ReadPosRankSum=2.427;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:5461,580,0 chrII 350135 . C T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=20.45;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3537,361,0 chrII 350166 . A G 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=4.127;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;MQRankSum=-1.714;QD=13.73;ReadPosRankSum=1.714;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:2696,294,0 chrII 350168 . A G 2681 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=35.99;MQ0=0;QD=13.89;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:2714,285,0 chrII 350178 . C T 2393 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=0;QD=12.53;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:2426,249,0 chrII 350197 . G A 2182 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=29.06;MQ0=0;QD=10.29;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:2215,231,0 chrII 350208 . G C 2247 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=174.0602;MLEAC=2;MLEAF=1.00;MQ=29.05;MQ0=0;QD=9.99;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:2280,252,0 chrII 350219 . A G 1755 SnpCluster AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.19;MQ0=0;QD=8.52;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:1788,221,0 chrII 350220 . T A 1783 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.912;DP=207;Dels=0.00;FS=3.715;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=30.40;MQ0=0;MQRankSum=-1.682;QD=8.61;ReadPosRankSum=1.715;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:1816,222,0 chrII 350225 . T G 2371 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=33.02;MQ0=0;MQRankSum=-1.570;QD=10.09;ReadPosRankSum=1.717;SB=-2.974e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:2404,252,0 chrII 350246 . C T 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=231;Dels=0.00;FS=3.067;HaplotypeScore=5.0012;MLEAC=2;MLEAF=1.00;MQ=40.66;MQ0=0;MQRankSum=0.742;QD=13.01;ReadPosRankSum=0.397;SB=-3.134e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:3038,312,0 chrII 350323 . C G 4487.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=22.66;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4487,475,0 chrII 350376 . T C 4114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.166;DP=206;Dels=0.00;FS=26.285;HaplotypeScore=194.3731;MLEAC=2;MLEAF=1.00;MQ=41.01;MQ0=0;MQRankSum=-1.913;QD=19.97;ReadPosRankSum=4.061;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:6,198:206:99:4114,433,0 chrII 350491 . G A 3556.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=25.04;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3556,370,0 chrII 350563 . G A 3612.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=24.74;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3612,379,0 chrII 350580 . G A 3353.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=23.78;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3353,340,0 chrII 350657 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=24.17;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3030,318,0 chrII 350675 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=21.59;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2796,291,0 chrII 350686 . A C 2784 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=22.82;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2817,291,0 chrII 350727 . T C 2005 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.85;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2038,219,0 chrII 350797 . A G 2342 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.90;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2375,249,0 chrII 350931 . C A 2096 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;QD=22.54;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2129,222,0 chrII 350936 . T A 1690 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=19.20;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1723,204,0 chrII 350937 . T G 1681 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=91;Dels=0.00;FS=2.581;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;MQRankSum=-1.656;QD=18.47;ReadPosRankSum=2.923;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:3,88:91:99:1714,204,0 chrII 350939 . G A 1683 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;MQRankSum=-0.203;QD=17.90;ReadPosRankSum=2.260;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:2,90:94:99:1716,204,0 chrII 351436 . G A 4127.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;QD=20.33;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4127,424,0 chrII 351440 . C T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=0;QD=19.76;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3774,394,0 chrII 351623 . A G 4525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=0.520;QD=22.51;ReadPosRankSum=1.680;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4525,486,0 chrII 351988 . C G 922 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=10.72;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:955,102,0 chrII 351999 . G A 1050 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=12.65;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1083,111,0 chrII 352513 . C A 4415.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.52;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4415,454,0 chrII 353595 . A T 120.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.449;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.441;QD=6.32;ReadPosRankSum=2.583;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:3,16:19:21:153,21,0 chrII 353774 . G T 3098 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=28.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3131,324,0 chrII 353810 . A G 3350.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.5962;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.59;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,123:126:99:3350,354,0 chrII 353932 . A G 5692.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.19;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5692,607,0 chrII 354093 . A T 6365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=255;Dels=0.00;FS=9.345;HaplotypeScore=13.1146;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.441;QD=24.96;ReadPosRankSum=2.925;SB=-3.435e+03 GT:AD:DP:GQ:PL 1/1:3,252:255:99:6365,655,0 chrII 354452 . T C 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=129;Dels=0.00;FS=6.780;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.654;QD=22.67;ReadPosRankSum=2.411;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:2,124:129:99:2958,324,0 chrII 354704 . A G 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=123;Dels=0.00;FS=3.119;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-1.389;QD=23.24;ReadPosRankSum=1.703;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2891,300,0 chrII 354720 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.17;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3006,306,0 chrII 355034 . C T 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.500;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.4368;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=22.77;ReadPosRankSum=0.198;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3416,363,0 chrII 355151 . T C 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=167;Dels=0.00;FS=2.848;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.154;QD=24.86;ReadPosRankSum=2.391;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4151,439,0 chrII 355349 . C T 4058.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.0373;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=25.36;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4058,424,0 chrII 355406 . G A 3811.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.71;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3811,385,0 chrII 355622 . C T 2993 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=20.09;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3026,312,0 chrII 355626 . G A 2891 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.3272;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=18.90;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2924,303,0 chrII 355748 . T G 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.799;QD=23.22;ReadPosRankSum=1.713;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4226,477,0 chrII 355836 . A G 4765.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.3637;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=24.07;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4765,502,0 chrII 356060 . T C 3486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=153;Dels=0.00;FS=4.576;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=0.000;QD=22.78;ReadPosRankSum=1.709;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3486,369,0 chrII 356064 . C T 3373.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.5495;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=21.76;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3373,346,0 chrII 356128 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.83;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3384,357,0 chrII 356221 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.75;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3481,375,0 chrII 356462 . C G 3444.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.8986;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.66;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,147:152:99:3444,387,0 chrII 356546 . C T 4681.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.01;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4681,490,0 chrII 356648 . T C 4425.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=25.14;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4425,466,0 chrII 356897 . C T 5030.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.97;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5030,520,0 chrII 356920 . T C 5180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=244;Dels=0.00;FS=2.574;HaplotypeScore=15.7346;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.551;QD=21.23;ReadPosRankSum=2.955;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:3,241:244:99:5180,556,0 chrII 357199 . A G 4898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.8747;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.786;QD=21.48;ReadPosRankSum=1.702;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:4898,523,0 chrII 357536 . G T 4456.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.6917;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.33;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4456,460,0 chrII 357752 . G C 4621.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.22;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4621,498,0 chrII 357976 . G A 4882.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.2433;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.81;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4882,505,0 chrII 358049 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.31;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3547,364,0 chrII 358277 . G A 4239.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.23;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4239,430,0 chrII 359662 . A G 5240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.2997;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.160;QD=24.60;ReadPosRankSum=1.699;SB=-2.894e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:5240,553,0 chrII 359978 . C T 4497.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.0911;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.71;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4497,463,0 chrII 360736 . G A 2642 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2675,288,0 chrII 361269 . A G 4798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=197;Dels=0.00;FS=9.788;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.144;QD=24.36;ReadPosRankSum=2.954;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:3,193:197:99:4798,505,0 chrII 362104 . T C 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.686;DP=139;Dels=0.00;FS=2.581;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.110;QD=20.90;ReadPosRankSum=2.920;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2938,312,0 chrII 362354 . C T 4023.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.12;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:4023,415,0 chrII 362537 . C G 3292.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.94;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3292,342,0 chrII 362800 . G C 4537.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.1620;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.93;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4537,481,0 chrII 363456 . A T 3032 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3065,316,0 chrII 364005 . A G 4164.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.01;FS=0.000;HaplotypeScore=10.2266;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.75;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4164,445,0 chrII 364073 . C T 3695.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=17.2811;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.48;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3695,388,0 chrII 364161 . T C 3941.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=25.59;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3941,420,0 chrII 364175 . A G 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=3.549;HaplotypeScore=6.9115;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-1.243;QD=23.75;ReadPosRankSum=1.711;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3872,417,0 chrII 364408 . A G 2593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=123;Dels=0.00;FS=2.807;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.070;QD=21.08;ReadPosRankSum=2.390;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2626,279,0 chrII 364419 . C T 2144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.130;DP=117;Dels=0.00;FS=3.979;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.316;QD=18.32;ReadPosRankSum=0.407;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:2177,201,0 chrII 364642 . A G 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=4.352;HaplotypeScore=69.1391;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=0.987;QD=22.32;ReadPosRankSum=1.688;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1796,201,0 chrII 364796 . T C 2335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.646;QD=23.12;ReadPosRankSum=2.377;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2368,255,0 chrII 364895 . C T 2311 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.01;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2344,246,0 chrII 365326 . A G 6373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=266;Dels=0.00;FS=3.609;HaplotypeScore=9.7562;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.407;QD=23.96;ReadPosRankSum=1.706;SB=-3.038e+03 GT:AD:DP:GQ:PL 1/1:1,263:266:99:6373,670,0 chrII 365525 . C T 5057.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=22.0283;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.78;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5057,541,0 chrII 365576 . T C 4471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=211;Dels=0.00;FS=7.887;HaplotypeScore=17.2729;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.520;QD=21.19;ReadPosRankSum=2.414;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:2,208:211:99:4471,483,0 chrII 365830 . G A 2823 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.0547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.33;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2856,294,0 chrII 366323 . T A 4846.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.19;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4846,496,0 chrII 366675 . G A 4139.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.88;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4139,427,0 chrII 367429 . T C 3010 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=20.90;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3043,315,0 chrII 367444 . G C 3103 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=20.41;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3136,330,0 chrII 367502 . T C 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=175;Dels=0.00;FS=2.687;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-0.685;QD=18.79;ReadPosRankSum=2.407;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3289,345,0 chrII 367503 . T C 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-0.984;QD=18.62;ReadPosRankSum=1.712;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3295,351,0 chrII 367531 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.6659;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.52;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3529,367,0 chrII 367614 . T G 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.056;QD=24.86;ReadPosRankSum=1.650;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4226,450,0 chrII 367774 . A T 4166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=0.699;QD=24.22;ReadPosRankSum=1.712;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4166,427,0 chrII 367900 . C A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.59;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:3327,346,0 chrII 368093 . C T 2841 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=13.6521;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2874,297,0 chrII 368565 . G A 3748.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.7707;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.85;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3748,399,0 chrII 368630 . T G 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=116;Dels=0.00;FS=3.493;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.365;QD=21.59;ReadPosRankSum=1.702;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2537,270,0 chrII 368716 . C T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=22.18;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3283,334,0 chrII 368722 . A G 3127 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.92;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3160,336,0 chrII 369221 . G T 3681.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.7844;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.54;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3681,382,0 chrII 370044 . C T 4135.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.91;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4135,424,0 chrII 371139 . T G 2371 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=21.17;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2404,258,0 chrII 371146 . C T 2200 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=19.13;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,111:115:99:2233,240,0 chrII 371449 . T A 3704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.231;QD=24.05;ReadPosRankSum=1.709;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3704,382,0 chrII 373440 . C A 3728.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.4589;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=19.83;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3728,391,0 chrII 373782 . A G 4280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=170;Dels=0.00;FS=4.849;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.639;QD=25.18;ReadPosRankSum=1.670;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:4280,457,0 chrII 375942 . T C 4009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.665;QD=25.06;ReadPosRankSum=1.710;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:4009,432,0 chrII 375972 . G A 3838.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.84;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3838,394,0 chrII 376042 . T C 3274.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7516;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3274,342,0 chrII 376217 . G C 3094 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.42;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3127,327,0 chrII 376244 . C T 3042 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.84;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3075,333,0 chrII 376298 . T C 2445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.517;DP=125;Dels=0.00;FS=6.085;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.976;QD=19.56;ReadPosRankSum=2.779;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:3,120:125:99:2478,267,0 chrII 376428 . T C 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=4.658;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-1.185;QD=24.82;ReadPosRankSum=1.671;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2863,306,0 chrII 376441 . A G 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.587;QD=24.31;ReadPosRankSum=1.703;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2926,312,0 chrII 376523 . A G 3123 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.9333;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.98;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3156,330,0 chrII 376667 . A G 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=3.010;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.882;QD=24.18;ReadPosRankSum=1.699;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2596,276,0 chrII 378818 . G A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.63;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3755,388,0 chrII 379023 . G A 4841.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4841,511,0 chrII 379598 . T C 2638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=114;Dels=0.00;FS=6.372;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.306;QD=23.14;ReadPosRankSum=2.407;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2671,285,0 chrII 379644 . C T 3337.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8794;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.54;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3337,343,0 chrII 379695 . A G 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.134;DP=140;Dels=0.00;FS=6.435;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.852;QD=22.13;ReadPosRankSum=2.362;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3131,330,0 chrII 380911 . T C 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=151;Dels=0.01;FS=3.016;HaplotypeScore=33.0055;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=0.932;QD=19.10;ReadPosRankSum=2.417;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2917,324,0 chrII 380932 . C T 2759 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=18.64;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2792,294,0 chrII 380948 . T C 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.038;QD=20.18;ReadPosRankSum=1.682;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2798,291,0 chrII 380971 . C T 3116 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.64;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3149,325,0 chrII 381431 . A T 5060.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.3104;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.80;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5060,529,0 chrII 381870 . T C 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=4.440;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.584;QD=22.29;ReadPosRankSum=1.648;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3656,390,0 chrII 382102 . C A 5129.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.7800;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=26.44;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:5129,526,0 chrII 383116 . C T 2332 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.39;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2365,246,0 chrII 383124 . A T 2409 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.73;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2442,255,0 chrII 383249 . G A 2643 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.78;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2676,276,0 chrII 383276 . G A 3335.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.7251;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.84;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3335,345,0 chrII 383390 . C T 3715.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=26.73;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3715,390,0 chrII 386954 . A T 3750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=183;Dels=0.00;FS=6.092;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.557;QD=20.49;ReadPosRankSum=2.382;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3750,402,0 chrII 386957 . T C 3837.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.32;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3837,408,0 chrII 387066 . A C 4082.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.20;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4082,432,0 chrII 387231 . C A 3714.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.3174;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.43;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3714,382,0 chrII 387602 . A T 2776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.3746;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.726;QD=22.21;ReadPosRankSum=1.676;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2809,300,0 chrII 387923 . T C 5358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.358;DP=239;Dels=0.00;FS=5.234;HaplotypeScore=15.0447;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.636;QD=22.42;ReadPosRankSum=3.402;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:4,233:239:99:5358,571,0 chrII 388435 . C G 4193.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.6875;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.17;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4193,444,0 chrII 389288 . G C 2211 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2244,234,0 chrII 389429 . C G 107.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.090;DP=99;Dels=0.00;FS=4.684;HaplotypeScore=5.9693;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=1.966;QD=1.08;ReadPosRankSum=-3.483;SB=-1.026e+01 GT:AD:DP:GQ:PL 1/1:92,5:99:15:140,15,0 chrII 390461 . A T 2792 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.34;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2825,300,0 chrII 390597 . G A 2587 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7264;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.41;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2620,267,0 chrII 390705 . C A 2694 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2727,291,0 chrII 391225 . C T 4526.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=16.5126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4526,463,0 chrII 391350 . G T 4096.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4096,424,0 chrII 392509 . C G 2424 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.6057;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=18.36;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2457,276,0 chrII 392522 . G A 1689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=134;Dels=0.04;FS=2.580;HaplotypeScore=21.4025;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=0.508;QD=12.60;ReadPosRankSum=1.024;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:1722,177,0 chrII 392785 . T G 3584.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.26;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3584,393,0 chrII 392806 . A T 3713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=163;Dels=0.00;FS=2.918;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=1.907;QD=22.78;ReadPosRankSum=2.389;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3713,379,0 chrII 393947 . T C 4476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=199;Dels=0.00;FS=6.012;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.217;QD=22.49;ReadPosRankSum=2.894;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:4476,477,0 chrII 394181 . C T 6308.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.03;SB=-3.293e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:6308,652,0 chrII 394376 . G A 6100.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=20.9737;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.46;SB=-3.002e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:6100,652,0 chrII 394430 . C T 6057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=14.2860;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.023;QD=24.13;ReadPosRankSum=-0.174;SB=-3.402e+03 GT:AD:DP:GQ:PL 1/1:1,249:251:99:6057,643,0 chrII 394726 . G C 3442.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.8486;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.04;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:3442,363,0 chrII 395115 . C T 1650 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.19;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1683,177,0 chrII 395280 . A T 2821 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=24.32;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2854,306,0 chrII 395507 . C G 1793 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=13.90;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1826,204,0 chrII 396726 . G C 4255.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.49;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4255,465,0 chrII 396761 . T C 5321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.311;DP=245;Dels=0.00;FS=13.813;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.025;QD=21.72;ReadPosRankSum=3.282;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:4,240:245:99:5321,565,0 chrII 396779 . G A 5579.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.77;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5579,589,0 chrII 396967 . A G 4249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.803;DP=179;Dels=0.00;FS=7.518;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.633;QD=23.74;ReadPosRankSum=3.741;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:5,172:179:99:4249,445,0 chrII 397113 . C T 3907.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.2122;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.72;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3907,406,0 chrII 397579 . C T 4535.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.1360;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.65;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4535,481,0 chrII 397615 . T C 4937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=199;Dels=0.00;FS=7.272;HaplotypeScore=10.3285;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.936;QD=24.81;ReadPosRankSum=2.412;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4937,520,0 chrII 398292 . G A 2679 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2712,282,0 chrII 398397 . A T 1926 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.93;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1959,210,0 chrII 398916 . G C 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=150;Dels=0.00;FS=3.448;HaplotypeScore=10.3196;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.214;QD=23.12;ReadPosRankSum=0.522;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,145:150:99:3468,375,0 chrII 399535 . C T 2914 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.08;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2947,303,0 chrII 399687 . T C 3012 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.35;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3045,330,0 chrII 399739 . T C 3063 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.5819;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.69;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3096,333,0 chrII 399796 . G A 3959.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.14;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3959,412,0 chrII 399952 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.87;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3358,357,0 chrII 399991 . G A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.59;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3737,396,0 chrII 400426 . G A 4256.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.6880;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.89;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4256,442,0 chrII 400504 . C G 5089.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.6177;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.23;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5089,555,0 chrII 400827 . T C 3511.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.6708;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3511,384,0 chrII 401588 . T G 4451.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.6770;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=22.03;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4451,472,0 chrII 401604 . C G 4096.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=21.11;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4096,441,0 chrII 401612 . T C 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=188;Dels=0.00;FS=3.346;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-1.732;QD=21.11;ReadPosRankSum=1.714;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3968,420,0 chrII 401823 . A G 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=142;Dels=0.00;FS=2.589;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.270;QD=23.07;ReadPosRankSum=2.908;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3276,351,0 chrII 401901 . G A 2413 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=15.6905;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.14;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2446,252,0 chrII 403241 . A C 4203.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.046;QD=22.24;ReadPosRankSum=1.677;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4203,450,0 chrII 403281 . T C 4169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=196;Dels=0.00;FS=3.784;HaplotypeScore=18.2432;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.566;QD=21.27;ReadPosRankSum=1.714;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4169,436,0 chrII 403324 . T C 4572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=201;Dels=0.00;FS=6.079;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.781;QD=22.75;ReadPosRankSum=2.944;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:3,194:201:99:4572,478,0 chrII 403621 . C G 3168 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3201,330,0 chrII 403944 . C T 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.024;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.9138;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.680;QD=21.93;ReadPosRankSum=1.680;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2928,285,0 chrII 404004 . T A 4033.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.59;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4033,415,0 chrII 404101 . C T 2711 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2744,282,0 chrII 404468 . G C 3401.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.38;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3401,366,0 chrII 404898 . T A 5805.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=17.7003;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.39;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5805,622,0 chrII 405615 . C A 2522 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.35;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2555,264,0 chrII 405752 . T C 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;MQRankSum=0.654;QD=23.32;ReadPosRankSum=1.706;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3204,348,0 chrII 405787 . A C 2993 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=23.02;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3026,321,0 chrII 406051 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.5709;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=23.01;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3163,342,0 chrII 406111 . G C 3215 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=20.74;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3248,348,0 chrII 406115 . C T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=21.35;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3331,351,0 chrII 406281 . A C 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=1.159;QD=23.43;ReadPosRankSum=1.705;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3032,321,0 chrII 406300 . A T 2827 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=8.9681;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.62;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2860,291,0 chrII 406339 . A G 2417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=1.176;QD=21.20;ReadPosRankSum=2.385;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2450,264,0 chrII 406615 . T G 5224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.887;QD=26.38;ReadPosRankSum=2.388;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:5224,553,0 chrII 406787 . T G 6360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=263;Dels=0.00;FS=3.825;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.362;QD=24.18;ReadPosRankSum=1.653;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:6360,699,0 chrII 407067 . C T 3047 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.9406;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=21.46;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3080,333,0 chrII 407504 . G C 3905.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.03;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3905,420,0 chrII 408426 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3300,342,0 chrII 409364 . A G 3959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=171;Dels=0.00;FS=12.067;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.826;QD=23.15;ReadPosRankSum=2.421;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3959,447,0 chrII 410850 . G A 3809.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.9147;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3809,397,0 chrII 410985 . A G 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=194;Dels=0.00;FS=3.193;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-1.714;QD=15.01;ReadPosRankSum=1.696;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:2944,327,0 chrII 411003 . C T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=16.55;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:3310,337,0 chrII 411152 . T A 4673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.7667;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.883;QD=23.37;ReadPosRankSum=1.715;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4673,481,0 chrII 411167 . T C 4074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.3915;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-1.533;QD=21.11;ReadPosRankSum=1.714;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:4074,438,0 chrII 411233 . T C 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=225;Dels=0.00;FS=9.997;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.210;QD=16.10;ReadPosRankSum=2.933;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:3,222:225:99:3623,384,0 chrII 412642 . A G 3667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.544;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.072;QD=24.45;ReadPosRankSum=1.685;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,146:150:99:3667,387,0 chrII 415547 . T C 4915.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.65;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4915,546,0 chrII 415782 . C T 253.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.747;DP=108;Dels=0.03;FS=133.495;HaplotypeScore=26.4049;MLEAC=1;MLEAF=0.500;MQ=50.44;MQ0=0;MQRankSum=-3.632;QD=2.34;ReadPosRankSum=-4.138;SB=3.421e-04 GT:AD:DP:GQ:PL 0/1:58,47:105:99:283,0,225 chrII 415846 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.3330;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.19;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3056,315,0 chrII 415869 . A C 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=5.127;HaplotypeScore=5.7940;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.287;QD=25.99;ReadPosRankSum=1.683;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3665,396,0 chrII 416376 . T C 3473.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.26;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3473,375,0 chrII 417046 . A T 2119 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2152,225,0 chrII 417729 . C G 1506 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=23.90;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1539,162,0 chrII 417736 . A C 1345 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=20.69;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1378,150,0 chrII 417744 . C T 1357 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=21.54;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1390,144,0 chrII 418383 . C A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=24.45;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3423,357,0 chrII 418404 . T G 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=4.331;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=0.483;QD=22.11;ReadPosRankSum=1.391;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2730,285,0 chrII 418420 . C T 2499 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.73;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2532,258,0 chrII 418450 . A G 1869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=98;Dels=0.00;FS=2.676;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.927;QD=19.07;ReadPosRankSum=2.399;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:2,95:98:99:1902,201,0 chrII 418484 . T C 2052 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.37;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2085,216,0 chrII 418505 . T A 2382 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.65;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2415,249,0 chrII 418557 . A G 2232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.420;QD=22.32;ReadPosRankSum=1.663;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2265,240,0 chrII 418649 . C T 2046 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5151;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.95;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2079,216,0 chrII 419031 . T C 3426.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.13;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3426,366,0 chrII 419913 . C G 2908 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.45;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2941,309,0 chrII 419931 . T C 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-1.347;QD=22.44;ReadPosRankSum=1.705;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2860,306,0 chrII 420047 . A G 2496 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2529,273,0 chrII 420351 . A G 4006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=167;Dels=0.00;FS=6.755;HaplotypeScore=7.3088;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-1.125;QD=23.99;ReadPosRankSum=2.405;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4006,421,0 chrII 420516 . G A 6280.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=11.7554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-3.532e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:6280,646,0 chrII 420567 . G T 5337.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.71;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5337,565,0 chrII 421030 . G C 4082.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.1121;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4082,453,0 chrII 422076 . C G 2861 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.64;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2894,300,0 chrII 422148 . T C 2328 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.03;FS=0.000;HaplotypeScore=7.2187;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.07;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2361,249,0 chrII 422164 . T C 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-0.614;QD=21.61;ReadPosRankSum=1.705;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2777,297,0 chrII 422787 . G A 3836.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.92;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3836,400,0 chrII 423251 . A G 2313 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1526;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.46;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2346,249,0 chrII 423264 . A G 2399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=109;Dels=0.00;FS=5.668;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.472;QD=22.01;ReadPosRankSum=2.936;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2432,261,0 chrII 423698 . G T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.5254;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.40;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3791,399,0 chrII 424154 . A G 5588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=218;Dels=0.00;FS=7.149;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.298;QD=25.63;ReadPosRankSum=2.382;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:5588,592,0 chrII 424367 . C T 4288.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.7855;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4288,445,0 chrII 424982 . A G 2712 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.98;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2745,297,0 chrII 425500 . T C 5577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.749;QD=23.33;ReadPosRankSum=1.703;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:1,235:239:99:5577,612,0 chrII 425596 . G A 4622.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.12;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4622,475,0 chrII 425780 . T C 4189.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.35;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4189,456,0 chrII 425844 . T A 3789.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6115;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.43;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3789,391,0 chrII 425891 . T A 2306 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2339,240,0 chrII 425982 . A T 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.559;QD=20.54;ReadPosRankSum=1.648;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2600,273,0 chrII 426165 . A G 4175.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.93;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4175,433,0 chrII 426289 . G A 3151 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.51;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3184,325,0 chrII 426299 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9365;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.60;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3635,376,0 chrII 426400 . G T 3693.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=22.7076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3693,390,0 chrII 426608 . A G 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.1225;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.745;QD=24.49;ReadPosRankSum=1.690;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:4065,432,0 chrII 426669 . C A 4125.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4125,421,0 chrII 426776 . A G 4079.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=18.0492;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.93;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4079,450,0 chrII 427153 . A G 4083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=180;Dels=0.00;FS=8.625;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.553;QD=22.68;ReadPosRankSum=2.381;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4083,456,0 chrII 427812 . A G 616 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.20;MQ0=26;QD=7.25;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,85:85:69:649,69,0 chrII 427842 . A G 268 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=24.19;MQ0=6;QD=5.06;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,53:53:33:301,33,0 chrII 427896 . G A 542 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=17.782;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.99;MQ0=0;MQRankSum=-0.404;QD=9.03;ReadPosRankSum=0.577;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:1,59:60:60:575,60,0 chrII 429617 . G A 53.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.16;MQ0=31;MQRankSum=-1.739;QD=1.26;ReadPosRankSum=1.423;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:26,16:43:9:86,9,0 chrII 429626 . G A 157.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=9.1790;MLEAC=1;MLEAF=0.500;MQ=31.82;MQ0=31;MQRankSum=3.923;QD=2.80;ReadPosRankSum=-3.725;SB=-2.373e-02 GT:AD:DP:GQ:PL 0/1:16,39:56:21:187,0,21 chrII 430067 . A G 6747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=293;Dels=0.00;FS=40.527;HaplotypeScore=27.6818;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=4.738;QD=23.03;ReadPosRankSum=3.462;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:10,283:293:99:6747,658,0 chrII 431229 . A G 4604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=199;Dels=0.00;FS=2.579;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.325;QD=23.14;ReadPosRankSum=2.965;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:3,195:199:99:4604,504,0 chrII 431273 . T C 4130.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=20.5429;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.09;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4130,433,0 chrII 433856 . G A 4031.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.58;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4031,427,0 chrII 434350 . G C 2102 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.21;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2135,231,0 chrII 434430 . A T 2762 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2795,288,0 chrII 434484 . A G 2231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.429;QD=20.28;ReadPosRankSum=1.669;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2264,252,0 chrII 434637 . C T 3297.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.07;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3297,342,0 chrII 435368 . G C 4769.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.73;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4769,499,0 chrII 436656 . T C 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=4.929;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.163;QD=23.73;ReadPosRankSum=1.683;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3346,363,0 chrII 436888 . G A 4269.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=26.68;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4269,436,0 chrII 437754 . C T 3339.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.49;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3339,354,0 chrII 438190 . A G 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=4.771;HaplotypeScore=8.8403;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.241;QD=24.60;ReadPosRankSum=1.674;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:3009,315,0 chrII 440341 . G A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3762,388,0 chrII 441607 . C T 4802.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.54;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4802,499,0 chrII 442031 . G C 3595.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3595,393,0 chrII 442249 . G A 4943.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.61;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4943,508,0 chrII 443359 . T C 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.688;QD=25.29;ReadPosRankSum=1.710;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3945,409,0 chrII 443543 . T C 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.225;QD=25.84;ReadPosRankSum=1.688;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:4057,432,0 chrII 443759 . G C 2991 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.32;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3024,327,0 chrII 444092 . G A 3954.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=25.18;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3954,406,0 chrII 444181 . G A 3048 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.88;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3081,327,0 chrII 444205 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.32;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3348,357,0 chrII 444343 . G A 2438 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.4858;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.66;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2471,264,0 chrII 444358 . T A 2543 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.56;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2576,279,0 chrII 444564 . A G 3153 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.36;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3186,336,0 chrII 444664 . C T 3004 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.46;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:3037,315,0 chrII 445482 . G A 2890 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.1426;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.70;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2923,306,0 chrII 445521 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.99;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3032,312,0 chrII 445593 . C T 3029 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=25.24;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3062,318,0 chrII 445614 . A G 2730 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.20;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2763,306,0 chrII 445731 . C T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.23;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3331,343,0 chrII 445764 . C T 2786 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.47;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2819,291,0 chrII 445794 . C T 2611 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.94;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2644,282,0 chrII 445875 . A G 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.201;QD=22.84;ReadPosRankSum=1.705;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3002,318,0 chrII 445948 . T C 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6050;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.980;QD=24.95;ReadPosRankSum=1.664;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3792,405,0 chrII 446007 . A G 3972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=174;Dels=0.00;FS=8.330;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.645;QD=22.83;ReadPosRankSum=2.351;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3972,429,0 chrII 446652 . T G 4147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.235;DP=174;Dels=0.00;FS=8.069;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.354;QD=23.83;ReadPosRankSum=3.347;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:4,167:174:99:4147,438,0 chrII 448173 . A T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3530,378,0 chrII 449283 . C T 5081.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.0744;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.15;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5081,523,0 chrII 449416 . T C 2998 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.1498;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.61;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3031,321,0 chrII 449467 . T G 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=4.949;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.132;QD=21.85;ReadPosRankSum=1.686;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3278,354,0 chrII 449588 . G A 2971 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.03;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3004,318,0 chrII 449879 . G T 4773.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.4341;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.12;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4773,487,0 chrII 450500 . G A 3860.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.8651;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.74;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3860,394,0 chrII 451373 . G A 5087.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.8734;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.88;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:5087,526,0 chrII 452131 . G A 2117 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=23.01;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2150,228,0 chrII 452218 . A G 1938 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=22.02;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1971,210,0 chrII 452372 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=44.03;MQ0=0;QD=17.12;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1625,168,0 chrII 452381 . T A 1343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=91;Dels=0.00;FS=6.166;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.99;MQ0=0;MQRankSum=-0.528;QD=14.76;ReadPosRankSum=2.396;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1376,144,0 chrII 452408 . C T 945 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=17.9470;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;QD=11.67;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:978,102,0 chrII 452891 . G A 7540.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=12.9147;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.05;SB=-3.507e+03 GT:AD:DP:GQ:PL 1/1:0,299:301:99:7540,772,0 chrII 453044 . C T 5426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=247;Dels=0.00;FS=4.735;HaplotypeScore=11.9268;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.079;QD=21.97;ReadPosRankSum=0.295;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:1,243:247:99:5426,545,0 chrII 453048 . T C 5282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=230;Dels=0.00;FS=4.752;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-1.220;QD=22.97;ReadPosRankSum=1.717;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5282,559,0 chrII 453164 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.25;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3488,363,0 chrII 453281 . T A 2009 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.37;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2042,222,0 chrII 453333 . G T 2389 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.2158;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.52;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2422,255,0 chrII 453411 . A G 2380 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.45;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2413,258,0 chrII 453417 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.67;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2481,255,0 chrII 453847 . G A 4736.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.0145;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=22.99;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4736,505,0 chrII 454772 . T C 4667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=186;Dels=0.00;FS=5.426;HaplotypeScore=14.5482;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=2.158;QD=25.09;ReadPosRankSum=2.940;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:3,182:186:99:4667,499,0 chrII 455204 . C T 9144.01 PASS AC=2;AF=1.00;AN=2;DP=356;Dels=0.00;FS=0.000;HaplotypeScore=24.2046;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.69;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:0,355:356:99:9144,952,0 chrII 455272 . A G 1711.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.981;DP=469;Dels=0.00;FS=62.771;HaplotypeScore=23.0762;MLEAC=1;MLEAF=0.500;MQ=51.36;MQ0=0;MQRankSum=-0.829;QD=3.65;ReadPosRankSum=-7.442;SB=-1.622e+03 GT:AD:DP:GQ:PL 0/1:234,235:469:99:1741,0,4467 chrII 455721 . G A 6432.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=14.6054;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.66;SB=-3.488e+03 GT:AD:DP:GQ:PL 1/1:0,295:297:99:6432,697,0 chrII 455916 . C T 5872.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=19.7536;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.12;SB=-3.285e+03 GT:AD:DP:GQ:PL 1/1:0,276:278:99:5872,625,0 chrII 456090 . C T 7089.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=23.1975;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.95;SB=-3.826e+03 GT:AD:DP:GQ:PL 1/1:0,296:296:99:7089,736,0 chrII 456431 . C G 5547.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:5547,583,0 chrII 456815 . G C 4183.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.1226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4183,459,0 chrII 457975 . T C 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=172;Dels=0.00;FS=6.678;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.535;QD=21.05;ReadPosRankSum=2.321;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3621,387,0 chrII 460849 . C T 4340.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.4088;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.59;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4340,460,0 chrII 461298 . A G 4623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.077;QD=22.12;ReadPosRankSum=2.355;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:2,206:209:99:4623,498,0 chrII 462229 . G A 2463 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2496,255,0 chrII 463459 . A G 5094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=216;Dels=0.00;FS=6.713;HaplotypeScore=19.1330;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.108;QD=23.58;ReadPosRankSum=2.427;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:5094,544,0 chrII 463915 . G A 8823.01 filter AC=2;AF=1.00;AN=2;DP=375;Dels=0.00;FS=0.000;HaplotypeScore=23.6329;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.53;SB=-4.333e+03 GT:AD:DP:GQ:PL 1/1:0,372:375:99:8823,946,0 chrII 464037 . T C 1273.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-12.980;DP=722;Dels=0.00;FS=3.858;HaplotypeScore=607.0488;MLEAC=1;MLEAF=0.500;MQ=58.49;MQ0=11;MQRankSum=-6.590;QD=1.76;ReadPosRankSum=-10.715;SB=-1.840e+02 GT:AD:DP:GQ:PL 0/1:596,125:722:99:1303,0,819 chrII 464040 . T C 679.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.526;DP=715;Dels=0.00;FS=5.279;HaplotypeScore=52.5110;MLEAC=1;MLEAF=0.500;MQ=58.21;MQ0=13;MQRankSum=6.690;QD=0.95;ReadPosRankSum=11.850;SB=-2.808e+03 GT:AD:DP:GQ:PL 0/1:167,548:715:99:709,0,2160 chrII 464079 . T C 7140.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.412;DP=678;Dels=0.00;FS=17.678;HaplotypeScore=46.1127;MLEAC=1;MLEAF=0.500;MQ=54.78;MQ0=14;MQRankSum=4.636;QD=10.53;ReadPosRankSum=10.016;SB=-3.071e+03 GT:AD:DP:GQ:PL 0/1:252,425:678:99:7140,0,1109 chrII 464085 . T C 328.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.900;DP=684;Dels=0.00;FS=13.175;HaplotypeScore=53.6024;MLEAC=1;MLEAF=0.500;MQ=54.68;MQ0=14;MQRankSum=-6.057;QD=0.48;ReadPosRankSum=-10.060;SB=-4.390e+02 GT:AD:DP:GQ:PL 0/1:485,196:684:99:358,0,9028 chrII 464422 . A T 7200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.735;DP=333;Dels=0.00;FS=4.822;HaplotypeScore=22.9940;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.309;QD=21.62;ReadPosRankSum=3.802;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:5,328:333:99:7200,775,0 chrII 464499 . C T 5230.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.54;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:5230,550,0 chrII 464651 . A T 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;DP=175;Dels=0.00;FS=6.829;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.990;QD=22.50;ReadPosRankSum=2.365;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3938,415,0 chrII 464685 . A G 3676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=163;Dels=0.00;FS=9.611;HaplotypeScore=11.2003;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.795;QD=22.55;ReadPosRankSum=2.895;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3676,390,0 chrII 465215 . C T 5112.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.9605;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=25.69;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:5112,526,0 chrII 465375 . T C 4423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=180;Dels=0.00;FS=5.783;HaplotypeScore=14.7836;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=1.173;QD=24.57;ReadPosRankSum=2.816;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:4423,466,0 chrII 465417 . A G 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=-1.596;QD=17.83;ReadPosRankSum=1.674;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:3242,357,0 chrII 465418 . G A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=18.67;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3379,357,0 chrII 465471 . T C 4286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=222;Dels=0.00;FS=11.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;MQRankSum=0.398;QD=19.31;ReadPosRankSum=2.959;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:3,219:222:99:4286,459,0 chrII 465472 . G A 4439.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=19.82;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4439,463,0 chrII 465657 . G C 3561.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=22.97;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3561,381,0 chrII 465891 . A C 2497 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=24.48;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2530,270,0 chrII 468345 . A G 3994.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.50;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3994,421,0 chrII 468834 . C T 4169.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.8551;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4169,433,0 chrII 468870 . C T 4447.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.85;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4447,460,0 chrII 470150 . T C 4135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=178;Dels=0.00;FS=3.110;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.610;QD=23.23;ReadPosRankSum=1.673;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:4135,441,0 chrII 470537 . C T 3320.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.01;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3320,343,0 chrII 470543 . T C 3154 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.48;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3187,333,0 chrII 470609 . A G 4604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.588;QD=21.51;ReadPosRankSum=1.667;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:4604,510,0 chrII 470876 . T C 4347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.1860;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.726;QD=23.88;ReadPosRankSum=1.693;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:1,178:182:99:4347,463,0 chrII 470903 . G A 4625.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.1464;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.21;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4625,492,0 chrII 471407 . A C 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.064;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.841;QD=23.43;ReadPosRankSum=-1.559;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3303,338,0 chrII 471470 . A G 3848.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.6657;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.99;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3848,411,0 chrII 471724 . C A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.76;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3991,412,0 chrII 471887 . C G 3693.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=20.0909;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.85;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3693,399,0 chrII 472037 . G T 3802.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.0833;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3802,402,0 chrII 472731 . T A 4009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=171;Dels=0.00;FS=6.306;HaplotypeScore=6.2480;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.309;QD=23.44;ReadPosRankSum=2.421;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:4009,406,0 chrII 472853 . T C 5039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.4818;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=0.518;QD=23.44;ReadPosRankSum=1.667;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:5039,538,0 chrII 473060 . T C 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=207;Dels=0.00;FS=11.382;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=42.59;MQ0=0;MQRankSum=-1.782;QD=16.75;ReadPosRankSum=2.966;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:3468,381,0 chrII 473078 . G A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.69;MQ0=0;QD=17.43;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3486,358,0 chrII 473093 . A C 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;MQRankSum=-1.732;QD=13.70;ReadPosRankSum=1.716;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:2952,327,0 chrII 473105 . G A 2889 SnpCluster AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.33;MQ0=0;QD=13.76;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:2922,306,0 chrII 473108 . G C 2633 SnpCluster AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=12.91;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:2666,282,0 chrII 473109 . C T 2650 SnpCluster AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=12.99;SB=-2.830e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:2683,282,0 chrII 473429 . G A 3447.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3447,363,0 chrII 473536 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9092;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3160,325,0 chrII 473605 . T G 2857 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2890,306,0 chrII 473910 . A G 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.860;QD=25.51;ReadPosRankSum=1.682;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3572,375,0 chrII 474031 . A G 3163 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.96;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3196,345,0 chrII 474308 . T A 3978.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3978,412,0 chrII 475313 . T C 5611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=268;Dels=0.00;FS=5.589;HaplotypeScore=18.1195;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.039;QD=20.94;ReadPosRankSum=1.719;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,267:268:99:5611,595,0 chrII 475550 . A G 4096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=3.434;HaplotypeScore=11.8575;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.524;QD=23.54;ReadPosRankSum=1.652;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:4096,435,0 chrII 475856 . T C 7322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=317;Dels=0.00;FS=3.005;HaplotypeScore=16.6022;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.097;QD=23.10;ReadPosRankSum=2.434;SB=-4.034e+03 GT:AD:DP:GQ:PL 1/1:2,315:317:99:7322,801,0 chrII 476135 . C T 6011.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=19.3284;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.02;SB=-3.171e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:6011,622,0 chrII 476950 . A C 3389.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=5.6441;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=19.82;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3389,372,0 chrII 476954 . C T 3485.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0208;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=20.26;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3485,372,0 chrII 477006 . T A 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=190;Dels=0.00;FS=8.589;HaplotypeScore=150.1278;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-0.485;QD=19.09;ReadPosRankSum=2.346;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3628,376,0 chrII 477229 . A C 2903 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2933;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.16;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2936,306,0 chrII 477343 . A G 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.6211;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=0.192;QD=18.52;ReadPosRankSum=1.697;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:2,98:101:99:1904,207,0 chrII 477407 . G C 1500 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=18.29;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1533,165,0 chrII 477934 . C T 627 filter AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=11.3001;MLEAC=2;MLEAF=1.00;MQ=12.18;MQ0=217;QD=2.46;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:112,143:255:72:660,72,0 chrII 478987 . T C 1519 filter AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.98;MQ0=82;QD=10.26;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:35,112:148:99:1552,165,0 chrII 479201 . G A 1725 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=24.30;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1758,180,0 chrII 479219 . G A 1306 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.06;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,59:62:99:1339,138,0 chrII 479607 . G C 3173 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3206,354,0 chrII 479752 . G A 4013.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4013,415,0 chrII 480337 . G A 4035.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.54;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4035,415,0 chrII 480782 . T A 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.8256;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.272;QD=22.67;ReadPosRankSum=1.633;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3229,342,0 chrII 481261 . C T 3715.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.12;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3715,396,0 chrII 481460 . G A 4305.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=24.19;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4305,442,0 chrII 481477 . T C 3731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-0.757;QD=21.95;ReadPosRankSum=1.711;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,166:170:99:3731,396,0 chrII 481670 . G A 4771.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.3393;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.24;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4771,499,0 chrII 482984 . G A 3647.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6536;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.31;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3647,393,0 chrII 483498 . G T 3408.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=27.05;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3408,352,0 chrII 483709 . C T 5227.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.77;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5227,538,0 chrII 483785 . A G 4723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=187;Dels=0.00;FS=10.601;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.162;QD=25.26;ReadPosRankSum=2.919;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:3,183:187:99:4723,496,0 chrII 483805 . C T 4911.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=24.07;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4911,520,0 chrII 483839 . G A 6223.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=11.8710;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=25.71;SB=-3.213e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:6223,643,0 chrII 483944 . A G 4424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=185;Dels=0.00;FS=2.662;HaplotypeScore=9.7413;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.175;QD=23.91;ReadPosRankSum=2.396;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4424,469,0 chrII 483971 . C T 3956.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.13;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3956,432,0 chrII 484562 . C T 3318.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.5981;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.27;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3318,343,0 chrII 485575 . C A 2401 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.77;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2434,252,0 chrII 486137 . A G 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.722;QD=24.33;ReadPosRankSum=1.696;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2369,249,0 chrII 486353 . C A 3196 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.20;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3229,331,0 chrII 486878 . G A 2520 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7386;MLEAC=2;MLEAF=1.00;MQ=60.55;MQ0=0;QD=21.91;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2553,270,0 chrII 487420 . A T 2783 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.0485;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.17;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2816,294,0 chrII 487454 . G A 3116 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=17.9719;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.12;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3149,333,0 chrII 487661 . C G 6997.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=12.8880;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.04;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:0,290:291:99:6997,789,0 chrII 488348 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:3265,337,0 chrII 488844 . G C 1350 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,59:62:99:1383,150,0 chrII 489199 . G A 6681.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:6681,691,0 chrII 489241 . A G 7691.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=17.7830;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.97;SB=-3.040e+03 GT:AD:DP:GQ:PL 1/1:0,306:308:99:7691,817,0 chrII 490619 . A C 5111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=228;Dels=0.00;FS=5.726;HaplotypeScore=4.9475;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=0.122;QD=22.42;ReadPosRankSum=1.717;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:5111,535,0 chrII 492025 . A C 4210.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.16;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4210,448,0 chrII 493122 . T C 4387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=201;Dels=0.00;FS=2.544;HaplotypeScore=6.2659;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-1.307;QD=21.83;ReadPosRankSum=2.965;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:3,197:201:99:4387,466,0 chrII 493123 . T C 4365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=204;Dels=0.00;FS=2.542;HaplotypeScore=7.8432;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=-0.571;QD=21.40;ReadPosRankSum=2.966;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:3,201:204:99:4365,471,0 chrII 493536 . T C 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=4.216;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.709;QD=23.27;ReadPosRankSum=1.706;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3105,339,0 chrII 493755 . A G 3065 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.95;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3098,342,0 chrII 493841 . C T 3274.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.90;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3274,339,0 chrII 493879 . T C 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=136;Dels=0.00;FS=11.235;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.282;QD=21.74;ReadPosRankSum=2.919;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2990,318,0 chrII 493930 . G A 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.443;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.919;QD=20.35;ReadPosRankSum=0.971;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2801,300,0 chrII 493942 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.16;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3136,324,0 chrII 493999 . C T 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.116;DP=137;Dels=0.00;FS=3.379;HaplotypeScore=7.3925;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.039;QD=24.42;ReadPosRankSum=1.270;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3345,343,0 chrII 494133 . G A 2261 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.84;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2294,234,0 chrII 494549 . T G 3130 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.4819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3163,339,0 chrII 494899 . T C 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=4.513;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.096;QD=20.38;ReadPosRankSum=1.709;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3029,321,0 chrII 494992 . A G 3779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=159;Dels=0.00;FS=3.035;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.672;QD=23.77;ReadPosRankSum=2.387;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3779,397,0 chrII 495085 . A G 4244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=172;Dels=0.00;FS=4.670;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.489;QD=24.67;ReadPosRankSum=1.712;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4244,448,0 chrII 495347 . A G 3383.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3383,357,0 chrII 495627 . C T 4913.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4913,496,0 chrII 495708 . T C 3893.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.59;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3893,420,0 chrII 495784 . C T 4261.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4261,436,0 chrII 495979 . C G 3013 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2641;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.32;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3046,342,0 chrII 496048 . T C 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=4.472;HaplotypeScore=9.2116;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.522;QD=21.30;ReadPosRankSum=1.650;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2717,291,0 chrII 496333 . T C 2742 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.64;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2775,294,0 chrII 496540 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.464;QD=22.42;ReadPosRankSum=1.664;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3430,354,0 chrII 497477 . A T 4344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=187;Dels=0.00;FS=3.024;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.538;QD=23.23;ReadPosRankSum=2.370;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4344,448,0 chrII 498697 . T C 3583.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=26.15;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3583,375,0 chrII 498806 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.79;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2817,291,0 chrII 498905 . A G 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.043;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;MQRankSum=0.237;QD=21.83;ReadPosRankSum=0.960;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2434,232,0 chrII 498911 . G A 2381 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=22.46;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2414,252,0 chrII 498923 . G C 1782 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.22;MQ0=0;QD=18.96;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1815,198,0 chrII 498935 . C T 1608 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;QD=18.07;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1641,177,0 chrII 498959 . G A 1416 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=16.66;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1449,153,0 chrII 499010 . G A 1733 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=21.40;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1766,183,0 chrII 499037 . G A 1722 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.52;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1755,180,0 chrII 499049 . T A 1497 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.08;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1530,159,0 chrII 499401 . A C 2085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=0.247;QD=22.66;ReadPosRankSum=1.694;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2118,234,0 chrII 499488 . C T 1390 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.39;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1423,147,0 chrII 499676 . T C 1419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.9404;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=-0.577;QD=17.52;ReadPosRankSum=1.048;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1452,156,0 chrII 499837 . A G 2298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=114;Dels=0.00;FS=8.951;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;MQRankSum=0.313;QD=20.16;ReadPosRankSum=2.385;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2331,249,0 chrII 499843 . C T 2260 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=19.65;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2293,240,0 chrII 499925 . A G 3938.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.91;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3938,418,0 chrII 499985 . G A 3883.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.55;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3883,403,0 chrII 500417 . A C 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=138;Dels=0.00;FS=3.405;HaplotypeScore=6.8149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.130;QD=21.40;ReadPosRankSum=1.707;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2986,318,0 chrII 500498 . T C 3751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.4317;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.338;QD=23.44;ReadPosRankSum=1.710;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3751,396,0 chrII 500795 . G T 4099.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.40;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4099,424,0 chrII 500843 . T A 3935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.520;QD=24.44;ReadPosRankSum=1.710;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3935,406,0 chrII 500915 . A T 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=146;Dels=0.00;FS=7.420;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.551;QD=23.38;ReadPosRankSum=2.382;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3413,363,0 chrII 501073 . A G 4770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=3.237;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.360;QD=26.95;ReadPosRankSum=1.693;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4770,502,0 chrII 501201 . A G 5764.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=8.1700;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.53;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5764,604,0 chrII 501422 . G A 7507.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=14.3234;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=22.21;SB=-3.943e+03 GT:AD:DP:GQ:PL 1/1:0,337:338:99:7507,799,0 chrII 501576 . A T 4928.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=60.69;MQ0=0;QD=24.28;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4928,508,0 chrII 503946 . G A 5860.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=19.7968;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.89;SB=-3.412e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5860,607,0 chrII 504973 . G A 5608.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=10.2328;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.93;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:5608,580,0 chrII 504994 . T C 5628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=280;Dels=0.00;FS=15.871;HaplotypeScore=14.4981;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-1.550;QD=20.10;ReadPosRankSum=3.430;SB=-2.957e+03 GT:AD:DP:GQ:PL 1/1:4,273:280:99:5628,595,0 chrII 505129 . G A 5501.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=16.1417;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.59;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5501,571,0 chrII 505225 . G A 4873.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.56;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4873,499,0 chrII 505336 . A T 3643.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.9331;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.13;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3643,373,0 chrII 505389 . T C 2383 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=18.76;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2416,261,0 chrII 505880 . G A 4002.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.40;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:4002,424,0 chrII 509717 . C T 3314.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.55;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3314,351,0 chrII 511436 . G T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.44;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3376,349,0 chrII 511752 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.9110;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.73;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3536,358,0 chrII 511793 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.85;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2873,300,0 chrII 511832 . G A 2595 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.60;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2628,288,0 chrII 511883 . C T 3175 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.80;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3208,336,0 chrII 511946 . C T 3075 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:3108,327,0 chrII 512167 . T C 4005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.074;QD=25.35;ReadPosRankSum=1.710;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:4005,426,0 chrII 512222 . G A 3059 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.1321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3092,333,0 chrII 512285 . T C 4836.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.93;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4836,519,0 chrII 512345 . C T 4781.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=16.4915;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.67;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4781,493,0 chrII 512788 . T C 3840.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.30;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3840,411,0 chrII 512835 . T C 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=4.944;HaplotypeScore=6.9333;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.135;QD=19.88;ReadPosRankSum=1.705;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2597,288,0 chrII 512859 . G A 2887 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.33;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2920,303,0 chrII 512963 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=26.12;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3500,364,0 chrII 512993 . G A 2951 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=26.35;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2984,306,0 chrII 513067 . A G 2840 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=25.13;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2873,306,0 chrII 513202 . T C 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.746;QD=24.54;ReadPosRankSum=1.648;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3051,330,0 chrII 515097 . G A 4143.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=23.41;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4143,430,0 chrII 515157 . G A 4550.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=26.00;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4550,472,0 chrII 515310 . C T 3475.01 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=21.99;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3475,355,0 chrII 515316 . C G 3288.01 SnpCluster AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.4167;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=19.93;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:3288,342,0 chrII 515320 . A G 3212.98 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=171;Dels=0.00;FS=2.672;HaplotypeScore=10.3411;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-1.814;QD=18.79;ReadPosRankSum=2.421;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3246,345,0 chrII 515419 . T A 2993 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.23;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3026,324,0 chrII 515542 . G T 3032 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=25.91;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3065,324,0 chrII 515946 . T C 4040.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4040,429,0 chrII 516344 . A G 5613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=220;Dels=0.00;FS=10.638;HaplotypeScore=11.2435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.099;QD=25.51;ReadPosRankSum=2.394;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:5613,592,0 chrII 518394 . C T 4320.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4320,459,0 chrII 519555 . C A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3861,403,0 chrII 519668 . A C 4297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=176;Dels=0.00;FS=2.843;HaplotypeScore=12.2304;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.765;QD=24.41;ReadPosRankSum=2.393;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:4297,457,0 chrII 520888 . T C 2681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.233;QD=23.94;ReadPosRankSum=1.701;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2714,285,0 chrII 520927 . T C 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.4998;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.416;QD=20.81;ReadPosRankSum=1.705;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2738,288,0 chrII 520944 . A G 3079 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.31;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3112,330,0 chrII 521138 . C T 3985.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=26.22;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3985,406,0 chrII 521192 . T C 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=152;Dels=0.00;FS=7.916;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.920;QD=22.85;ReadPosRankSum=2.336;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3473,366,0 chrII 521343 . G A 3504.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3504,375,0 chrII 521820 . G A 3644.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3930;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.48;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3644,379,0 chrII 523037 . A C 3501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=143;Dels=0.00;FS=4.106;HaplotypeScore=10.9584;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.486;QD=24.48;ReadPosRankSum=1.682;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,138:143:99:3501,372,0 chrII 523760 . G C 3629.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.26;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,157:163:99:3629,387,0 chrII 523940 . T C 4216.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.9632;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.73;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4216,462,0 chrII 524930 . T A 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.168;QD=24.67;ReadPosRankSum=1.706;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3331,345,0 chrII 525342 . T C 4957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=225;Dels=0.00;FS=3.459;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-0.881;QD=22.03;ReadPosRankSum=1.701;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:4957,543,0 chrII 525363 . C A 5100.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.29;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5100,529,0 chrII 525674 . G A 4942.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.1748;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.01;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4942,508,0 chrII 526005 . G A 3685.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.3382;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.62;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3685,385,0 chrII 526248 . G A 3326.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3326,360,0 chrII 526512 . T C 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=4.572;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.523;QD=22.05;ReadPosRankSum=1.686;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3285,363,0 chrII 526568 . G A 2549 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=16.5618;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.23;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2582,276,0 chrII 528998 . C T 3201 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.81;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3234,334,0 chrII 529298 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.1044;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.924;QD=23.64;ReadPosRankSum=1.686;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3593,387,0 chrII 530377 . T C 3619.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.4060;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.97;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3619,378,0 chrII 532114 . T C 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=139;Dels=0.00;FS=6.373;HaplotypeScore=13.4869;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.310;QD=20.77;ReadPosRankSum=2.397;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2920,309,0 chrII 532232 . G A 4019.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.79;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4019,415,0 chrII 532597 . T C 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=138;Dels=0.00;FS=5.940;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=1.650;QD=23.93;ReadPosRankSum=2.949;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3302,354,0 chrII 532658 . A G 2585 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=22.48;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2618,279,0 chrII 532659 . A G 2568 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=22.14;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2601,276,0 chrII 532679 . C A 2277 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=21.28;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2310,243,0 chrII 532705 . A T 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=102;Dels=0.00;FS=2.815;HaplotypeScore=6.0313;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;MQRankSum=-0.398;QD=17.07;ReadPosRankSum=2.353;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1774,180,0 chrII 532716 . G A 2116 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=18.40;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2149,225,0 chrII 532792 . G T 3492.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=22.24;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3492,366,0 chrII 532810 . C G 3221.92 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=22.07;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3255,342,0 chrII 532827 . T G 2929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;MQRankSum=0.265;QD=20.20;ReadPosRankSum=1.660;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:2962,312,0 chrII 532850 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=15.75;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2017,222,0 chrII 532864 . A C 1823 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=15.07;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:1856,201,0 chrII 532899 . T C 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;MQRankSum=0.087;QD=18.33;ReadPosRankSum=1.697;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1848,198,0 chrII 532921 . A G 1965 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=19.08;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1998,210,0 chrII 532929 . G A 2195 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=19.42;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2228,237,0 chrII 532976 . A G 2706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=0.525;QD=20.35;ReadPosRankSum=1.653;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2739,288,0 chrII 533002 . A G 2950 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=23.05;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2983,315,0 chrII 533105 . A T 2837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=114;Dels=0.00;FS=3.089;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;MQRankSum=-1.268;QD=24.89;ReadPosRankSum=1.701;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2870,294,0 chrII 533216 . A C 2475 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;QD=19.96;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2508,273,0 chrII 533250 . A G 1558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=3.095;HaplotypeScore=4.1169;MLEAC=2;MLEAF=1.00;MQ=39.61;MQ0=0;MQRankSum=-0.933;QD=14.98;ReadPosRankSum=1.699;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1591,171,0 chrII 533257 . A G 1262 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=78.7212;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;QD=13.01;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1295,141,0 chrII 533278 . G A 1061 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=0;QD=9.92;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1094,117,0 chrII 533300 . C G 1100 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=10.00;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1133,123,0 chrII 533308 . G A 1281 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=11.04;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1314,135,0 chrII 533310 . G A 1275 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=10.99;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1308,135,0 chrII 533330 . T A 1551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=139;Dels=0.00;FS=6.849;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=36.15;MQ0=0;MQRankSum=-0.632;QD=11.16;ReadPosRankSum=2.414;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:1584,165,0 chrII 533611 . T C 450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-5.587;DP=150;Dels=0.00;FS=6.365;HaplotypeScore=236.1738;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;MQRankSum=-1.165;QD=3.00;ReadPosRankSum=-8.348;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:111,32:150:51:483,51,0 chrII 533657 . C T 2875 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=19.17;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2908,309,0 chrII 533727 . A G 3440.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=17.1727;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.24;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:3440,363,0 chrII 534745 . T C 2590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=4.506;HaplotypeScore=8.9816;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.541;QD=20.39;ReadPosRankSum=1.623;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2623,288,0 chrII 535517 . C T 3325.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3325,343,0 chrII 535549 . A G 3098 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.59;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:3131,336,0 chrII 535983 . T C 5537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=237;Dels=0.00;FS=9.484;HaplotypeScore=17.4445;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.953;QD=23.36;ReadPosRankSum=2.910;SB=-2.937e+03 GT:AD:DP:GQ:PL 1/1:3,232:237:99:5537,592,0 chrII 536325 . C T 3836.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.9564;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.68;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3836,402,0 chrII 536426 . C A 3360.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.33;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3360,348,0 chrII 536615 . G A 4097.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=24.68;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4097,424,0 chrII 536637 . A G 3174 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=20.48;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3207,354,0 chrII 536661 . T C 2922 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=19.35;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2955,327,0 chrII 536682 . C T 3226.07 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=19.43;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3259,337,0 chrII 536700 . G A 3278.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.1224;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.11;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3278,342,0 chrII 536751 . T C 3810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=172;Dels=0.00;FS=6.678;HaplotypeScore=11.8712;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-1.693;QD=22.15;ReadPosRankSum=2.321;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3810,411,0 chrII 536808 . T A 5231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=207;Dels=0.00;FS=6.748;HaplotypeScore=8.7078;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-1.734;QD=25.27;ReadPosRankSum=2.426;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:5231,553,0 chrII 536917 . C T 3933.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=25.88;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3933,409,0 chrII 536988 . G A 3738.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.07;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3738,385,0 chrII 537018 . C T 3749.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.03;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3749,385,0 chrII 537174 . G A 2792 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.4567;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=22.52;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2825,294,0 chrII 538047 . G A 3498.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.91;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3498,375,0 chrII 538686 . G A 4575.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.14;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4575,469,0 chrII 538919 . A C 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.6445;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.771;QD=22.83;ReadPosRankSum=1.682;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3183,330,0 chrII 538968 . T A 3196 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.50;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3229,331,0 chrII 539253 . G A 1520 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.0491;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=16.89;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1553,171,0 chrII 539483 . T C 3802.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3802,397,0 chrII 539637 . T C 3746.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.48;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3746,396,0 chrII 539810 . A T 2701 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=10.3753;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=23.09;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2734,282,0 chrII 539825 . G T 2699 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=23.07;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2732,288,0 chrII 539861 . A G 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=3.174;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.732;QD=21.19;ReadPosRankSum=1.681;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2893,309,0 chrII 539981 . G A 3646.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.97;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3646,390,0 chrII 540238 . A G 5576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=227;Dels=0.00;FS=2.908;HaplotypeScore=13.6590;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.581;QD=24.56;ReadPosRankSum=2.417;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:2,224:227:99:5576,598,0 chrII 540838 . G A 5323.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=25.23;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5323,553,0 chrII 541001 . T C 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.562;DP=137;Dels=0.00;FS=19.343;HaplotypeScore=20.7283;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.613;QD=23.20;ReadPosRankSum=3.781;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:5,131:137:99:3212,336,0 chrII 541110 . G A 2402 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=21.45;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2435,258,0 chrII 541111 . T A 2381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.01;FS=4.433;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=-0.078;QD=21.26;ReadPosRankSum=1.638;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2414,249,0 chrII 541145 . G A 2083 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.22;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2116,222,0 chrII 541344 . T C 2656 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=25.30;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2689,279,0 chrII 541358 . C T 2519 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=24.22;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2552,270,0 chrII 541559 . T C 1579 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=17.16;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1612,174,0 chrII 541560 . G A 1623 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=17.64;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1656,177,0 chrII 541582 . A T 1546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.659;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=-2.823;QD=20.89;ReadPosRankSum=2.905;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:3,71:74:99:1579,165,0 chrII 541608 . T A 858 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=19.07;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:891,99,0 chrII 541899 . C T 2681 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.29;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2714,288,0 chrII 542052 . T G 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.142;QD=25.02;ReadPosRankSum=1.704;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3086,327,0 chrII 542121 . C T 3120 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.37;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3153,327,0 chrII 542175 . A G 3003 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.41;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3036,321,0 chrII 542283 . T C 2828 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2861,300,0 chrII 542367 . G A 3035 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.09;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3068,315,0 chrII 542402 . G A 3038 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.73;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3071,313,0 chrII 542481 . A C 2776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=3.129;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.484;QD=25.01;ReadPosRankSum=1.638;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2809,300,0 chrII 542597 . C T 3102 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.50;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3135,330,0 chrII 543006 . T C 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.5706;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.310;QD=23.27;ReadPosRankSum=1.686;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3514,369,0 chrII 543299 . A G 3648.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.24;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3648,382,0 chrII 543307 . C A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.64;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3645,384,0 chrII 544772 . A G 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=115;Dels=0.00;FS=3.447;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.491;QD=24.15;ReadPosRankSum=1.702;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2810,297,0 chrII 546015 . A C 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.8459;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.307;QD=23.88;ReadPosRankSum=1.702;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2779,279,0 chrII 546933 . A G 5444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.133;DP=222;Dels=0.00;FS=10.661;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.262;QD=24.52;ReadPosRankSum=4.172;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:6,215:222:99:5444,574,0 chrII 547256 . G A 3429.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3429,355,0 chrII 548060 . A G 4020.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=25.61;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4020,424,0 chrII 548102 . G A 3383.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3383,351,0 chrII 548443 . T C 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.501;QD=24.80;ReadPosRankSum=1.703;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3034,318,0 chrII 549650 . A G 4051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=165;Dels=0.00;FS=6.712;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.311;QD=24.55;ReadPosRankSum=2.420;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:4051,432,0 chrII 550111 . G A 5297.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.1341;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.87;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:5297,565,0 chrII 553854 . T C 4129.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=18.1466;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.277;QD=23.46;ReadPosRankSum=1.673;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4129,436,0 chrII 554042 . G C 5491.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.54;SB=-2.944e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5491,580,0 chrII 554096 . A C 4434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=192;Dels=0.00;FS=2.941;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.413;QD=23.09;ReadPosRankSum=2.424;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4434,486,0 chrII 554441 . T C 2846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.881;QD=24.75;ReadPosRankSum=1.702;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2879,306,0 chrII 554537 . G A 3088 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.5187;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.11;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3121,321,0 chrII 555381 . G A 1459 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.14;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1492,165,0 chrII 555503 . C T 3397.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8366;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.54;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3397,354,0 chrII 556100 . G A 2885 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=24.24;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2918,306,0 chrII 557132 . T C 4291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=167;Dels=0.00;FS=2.906;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.464;QD=25.69;ReadPosRankSum=2.391;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4291,454,0 chrII 557254 . A G 4061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=171;Dels=0.00;FS=3.032;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.654;QD=23.75;ReadPosRankSum=2.378;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:4061,424,0 chrII 557651 . T A 3959.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=26.22;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3959,409,0 chrII 558463 . T C 1990 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2023,219,0 chrII 558673 . G A 2764 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2797,306,0 chrII 559922 . C G 1414 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=47.4050;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1447,153,0 chrII 563013 . T A 386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.595;DP=27;Dels=0.04;FS=0.000;HaplotypeScore=5.8286;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=1.595;QD=14.30;ReadPosRankSum=1.595;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:1,25:26:45:419,45,0 chrII 564193 . G T 7421.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.19;SB=-3.735e+03 GT:AD:DP:GQ:PL 1/1:0,320:320:99:7421,799,0 chrII 564526 . A G 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.251;QD=22.77;ReadPosRankSum=1.713;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4099,433,0 chrII 564882 . G C 1669 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1702,180,0 chrII 565493 . C T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.77;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3518,366,0 chrII 566056 . T C 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.00;FS=4.595;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.188;QD=23.05;ReadPosRankSum=1.675;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2868,309,0 chrII 566820 . C T 3630.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3630,379,0 chrII 567048 . T A 4063.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4063,429,0 chrII 569759 . A G 2841 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.87;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2874,306,0 chrII 571089 . C T 2929 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.36;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2962,312,0 chrII 571411 . A G 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.2567;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.701;QD=23.32;ReadPosRankSum=1.701;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2668,285,0 chrII 573446 . G A 3086 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3119,321,0 chrII 573759 . C T 2335 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2368,249,0 chrII 573792 . A T 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=3.499;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.295;QD=22.83;ReadPosRankSum=1.658;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2179,228,0 chrII 573826 . G A 2423 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2456,258,0 chrII 574227 . G T 4030.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.9324;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.42;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4030,415,0 chrII 574833 . C T 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.3092;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=0.577;QD=21.62;ReadPosRankSum=1.575;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2909,297,0 chrII 574834 . C T 2813 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.3092;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.47;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2846,289,0 chrII 574962 . G T 4533.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.7522;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4533,472,0 chrII 575375 . T A 1890 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;MQRankSum=-1.020;QD=12.95;ReadPosRankSum=1.661;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:1923,198,0 chrII 575379 . A G 1840 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.24;MQ0=0;QD=12.87;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:1873,198,0 chrII 575382 . C A 1875 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;QD=12.84;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1908,198,0 chrII 575388 . G A 1759 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=0;QD=11.97;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:1792,189,0 chrII 575391 . C A 1682 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.063;QD=11.60;ReadPosRankSum=-0.179;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:1715,180,0 chrII 575394 . T A 1673 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.6722;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.15;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:1706,177,0 chrII 575398 . C G 1602 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.6638;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=0;QD=10.27;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:1635,174,0 chrII 575402 . T C 1586 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=150;Dels=0.00;FS=5.630;HaplotypeScore=6.0243;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;MQRankSum=-2.899;QD=10.57;ReadPosRankSum=2.953;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:1619,171,0 chrII 575403 . G A 1643 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.8130;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=0;QD=10.88;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:1676,174,0 chrII 575460 . G A 3427.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.2640;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=18.33;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3427,357,0 chrII 576183 . T C 2184 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.00;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2217,234,0 chrII 577950 . T C 4764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=222;Dels=0.00;FS=5.183;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.447;QD=21.46;ReadPosRankSum=1.716;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:4764,499,0 chrII 579141 . C T 2286 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2319,237,0 chrII 580282 . T A 4916.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4916,528,0 chrII 580868 . T C 6387.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=5.8839;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.38;SB=-3.222e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:6387,667,0 chrII 581091 . A C 5247.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.52;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5247,567,0 chrII 581460 . A G 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=0.490;QD=21.74;ReadPosRankSum=1.613;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3207,339,0 chrII 581465 . A G 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9094;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=0.800;QD=21.27;ReadPosRankSum=1.708;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3117,333,0 chrII 581960 . C T 6757.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=17.5087;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.08;SB=-3.618e+03 GT:AD:DP:GQ:PL 1/1:0,306:306:99:6757,691,0 chrII 582285 . T C 4734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.604;QD=24.66;ReadPosRankSum=1.677;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:4734,513,0 chrII 583825 . T G 5806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=16.5398;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.291;QD=25.69;ReadPosRankSum=1.686;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:5806,616,0 chrII 584232 . C T 5029.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.6518;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.40;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5029,520,0 chrII 584361 . C T 5094.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.39;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5094,529,0 chrII 585769 . T C 2944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=15.3442;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.089;QD=21.03;ReadPosRankSum=1.707;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,136:140:99:2977,321,0 chrII 585814 . C T 2641 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2674,282,0 chrII 585983 . T C 3039 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3072,327,0 chrII 586329 . T C 1354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.060;DP=74;Dels=0.00;FS=2.878;HaplotypeScore=11.7416;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=0.886;QD=18.30;ReadPosRankSum=1.025;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:2,71:74:99:1387,147,0 chrII 586574 . C G 3566.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.76;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3566,405,0 chrII 586611 . G C 2977 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3117;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.20;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3010,315,0 chrII 586873 . A G 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=3.185;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.775;QD=23.47;ReadPosRankSum=1.664;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3591,378,0 chrII 587456 . C A 3725.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3725,399,0 chrII 587830 . G C 2888 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2921,318,0 chrII 589871 . A G 2171 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.56;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2204,246,0 chrII 589872 . G T 2300 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.91;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2333,246,0 chrII 589895 . T C 2133 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.39;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2166,237,0 chrII 589941 . G A 2521 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.01;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2554,270,0 chrII 590243 . C T 3088 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3121,333,0 chrII 590654 . A G 3894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.350;DP=160;Dels=0.00;FS=8.332;HaplotypeScore=8.6786;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.148;QD=24.34;ReadPosRankSum=3.273;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:4,156:160:99:3894,420,0 chrII 590733 . C T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=21.61;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3457,360,0 chrII 590742 . C T 3305.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.7412;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.74;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3305,340,0 chrII 590898 . C T 4443.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.89;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4443,457,0 chrII 590982 . T C 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=3.542;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.997;QD=23.13;ReadPosRankSum=1.711;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3816,405,0 chrII 591204 . T C 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.253;QD=23.61;ReadPosRankSum=1.710;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3802,411,0 chrII 591378 . C A 2447 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.53;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2480,264,0 chrII 591877 . T C 1397.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.131;DP=197;Dels=0.00;FS=124.647;HaplotypeScore=7.3010;MLEAC=1;MLEAF=0.500;MQ=21.52;MQ0=27;MQRankSum=4.430;QD=7.09;ReadPosRankSum=0.111;SB=-5.550e+02 GT:AD:DP:GQ:PL 0/1:88,109:197:99:1427,0,669 chrII 592377 . A T 4562.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.763;DP=219;Dels=0.00;FS=2.570;HaplotypeScore=16.9778;MLEAC=2;MLEAF=1.00;MQ=42.07;MQ0=17;MQRankSum=2.412;QD=20.83;ReadPosRankSum=1.445;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:15,204:219:99:4562,457,0 chrII 592744 . T A 3880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.468;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.108;QD=23.95;ReadPosRankSum=1.710;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3880,406,0 chrII 592985 . A G 2093 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.36;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2126,228,0 chrII 593091 . T C 2504 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2537,285,0 chrII 593149 . T A 1644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=76;Dels=0.01;FS=5.075;HaplotypeScore=8.4203;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.702;QD=21.63;ReadPosRankSum=1.545;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1677,177,0 chrII 593987 . T C 3497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.7756;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.637;QD=23.63;ReadPosRankSum=1.685;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3497,372,0 chrII 594059 . G T 4091.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.64;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4091,424,0 chrII 594730 . G A 3463.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3463,363,0 chrII 594781 . T C 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=146;Dels=0.00;FS=6.671;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=1.322;QD=23.81;ReadPosRankSum=2.416;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3476,372,0 chrII 594942 . T C 2647 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2680,291,0 chrII 595127 . C A 3320.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.6581;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=25.74;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3320,340,0 chrII 595246 . C T 3563.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=24.57;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3563,375,0 chrII 595346 . G T 2289 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=106.1136;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=18.92;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2322,249,0 chrII 595497 . A G 2650 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=22.84;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2683,288,0 chrII 595508 . A G 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.746;DP=115;Dels=0.00;FS=6.127;HaplotypeScore=97.6784;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=-1.097;QD=20.29;ReadPosRankSum=2.939;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2366,252,0 chrII 595916 . G C 1975 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.15;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2008,225,0 chrII 595927 . T C 2122 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=21.01;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2155,225,0 chrII 596219 . C T 3017 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.93;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3050,315,0 chrII 596258 . A T 3127 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.05;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3160,333,0 chrII 596828 . T C 5465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=234;Dels=0.00;FS=6.075;HaplotypeScore=8.6892;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.185;QD=23.35;ReadPosRankSum=2.927;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:3,230:234:99:5465,597,0 chrII 597100 . G A 1230 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.22;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1263,129,0 chrII 597198 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.60;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2260,231,0 chrII 597806 . C T 3484.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.6938;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.22;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3484,361,0 chrII 598090 . A G 2643 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3213;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.81;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2676,282,0 chrII 598137 . C T 2495 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2528,258,0 chrII 598254 . T G 3774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.677;DP=152;Dels=0.00;FS=7.867;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.209;QD=24.83;ReadPosRankSum=3.791;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:5,147:152:99:3774,402,0 chrII 598521 . A G 4015.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.90;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4015,426,0 chrII 598635 . C T 3519.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.46;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3519,367,0 chrII 599098 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.87;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3266,348,0 chrII 599687 . C T 3626.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.5537;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.01;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3626,376,0 chrII 600505 . T A 2059 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2092,216,0 chrII 600570 . C T 2052 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.31;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2085,219,0 chrII 601142 . A G 3962.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3962,418,0 chrII 602361 . C T 4100.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4100,427,0 chrII 604454 . G T 2834 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0377;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.97;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2867,294,0 chrII 605039 . G A 2450 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.2776;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.56;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2483,255,0 chrII 605235 . G A 3636.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.76;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3636,387,0 chrII 605653 . A G 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.668;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.045;QD=23.90;ReadPosRankSum=1.703;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2925,318,0 chrII 605930 . T C 5175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.225;DP=215;Dels=0.00;FS=4.982;HaplotypeScore=12.8425;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.878;QD=24.07;ReadPosRankSum=3.395;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:4,211:215:99:5175,547,0 chrII 609854 . G A 3055 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.84;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3088,316,0 chrII 609915 . C T 2825 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.24;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2858,303,0 chrII 609958 . G C 2497 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.4096;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2530,273,0 chrII 610045 . A G 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=3.538;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-0.992;QD=21.32;ReadPosRankSum=1.706;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2826,312,0 chrII 610060 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.72;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2878,291,0 chrII 610185 . G A 3930.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.35;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3930,417,0 chrII 610797 . T C 3178 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=19.1837;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=17.18;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3211,345,0 chrII 611052 . G T 3549.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.2781;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.66;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3549,367,0 chrII 611216 . C T 4164.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.3375;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=23.93;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4164,433,0 chrII 611232 . A C 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=168;Dels=0.00;FS=3.367;HaplotypeScore=6.0441;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.535;QD=22.14;ReadPosRankSum=1.690;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:1,164:168:99:3719,396,0 chrII 611445 . G T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.99;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3564,367,0 chrII 611842 . C T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.1096;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.90;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3810,388,0 chrII 614131 . A G 2785 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.8482;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.80;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2818,297,0 chrII 614316 . C T 4159.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.90;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4159,430,0 chrII 614507 . C T 4937.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=22.04;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4937,511,0 chrII 614520 . A G 4813.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.49;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4813,537,0 chrII 614556 . T C 4209.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.33;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4209,465,0 chrII 615738 . C A 4404.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.55;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4404,457,0 chrII 616142 . A C 4849.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=17.1508;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.12;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4849,511,0 chrII 617513 . T C 3799.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6979;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.60;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3799,405,0 chrII 617606 . A C 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.679;QD=23.65;ReadPosRankSum=1.664;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2469,258,0 chrII 618167 . T C 3333.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.98;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3333,354,0 chrII 618737 . C T 3925.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.01;FS=0.000;HaplotypeScore=12.0538;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=24.84;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3925,412,0 chrII 618786 . T G 3397.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.50;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3397,366,0 chrII 618804 . G A 3006 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=132.6763;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=20.17;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3039,321,0 chrII 618844 . A T 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.994;DP=161;Dels=0.00;FS=15.446;HaplotypeScore=12.1085;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.049;QD=20.31;ReadPosRankSum=4.012;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:6,155:161:99:3270,334,0 chrII 618892 . G A 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.3187;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-1.077;QD=21.06;ReadPosRankSum=1.709;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3150,345,0 chrII 618907 . A G 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=-1.664;QD=20.36;ReadPosRankSum=1.709;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3148,333,0 chrII 618908 . T C 3103 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=20.28;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3136,333,0 chrII 618941 . T G 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=157;Dels=0.00;FS=10.819;HaplotypeScore=5.7287;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=0.801;QD=20.36;ReadPosRankSum=2.955;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3229,351,0 chrII 619239 . C T 2878 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.0046;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.39;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2911,297,0 chrII 619355 . A T 3116 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.25;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3149,330,0 chrII 619394 . G A 4036.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.21;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4036,415,0 chrII 619469 . T C 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.843;QD=25.59;ReadPosRankSum=1.662;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3788,397,0 chrII 619502 . T C 3644.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.29;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3644,387,0 chrII 619507 . G A 3548.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=24.30;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3548,367,0 chrII 619637 . T C 4001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=3.952;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.536;QD=25.16;ReadPosRankSum=1.710;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:4001,426,0 chrII 620141 . T C 3955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.627;QD=24.26;ReadPosRankSum=1.711;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3955,429,0 chrII 620443 . G T 2101 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.15;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2134,219,0 chrII 620527 . A G 2411 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2444,264,0 chrII 620813 . C T 4796.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.3272;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.64;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4796,502,0 chrII 622974 . T A 2370 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=21.55;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2403,249,0 chrII 622975 . T G 2281 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.379;DP=113;Dels=0.00;FS=5.263;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=-0.008;QD=20.19;ReadPosRankSum=3.332;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:4,108:113:99:2314,246,0 chrII 622976 . C A 2395 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=21.19;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2428,249,0 chrII 622977 . T A 2345 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=20.75;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2378,249,0 chrII 623901 . C T 4739.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.04;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4739,490,0 chrII 624403 . T C 3055 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3088,336,0 chrII 625298 . A G 3964.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.25;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3964,417,0 chrII 625725 . A C 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=7.076;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.022;QD=19.49;ReadPosRankSum=2.378;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3333,354,0 chrII 625734 . A G 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.286;DP=182;Dels=0.00;FS=13.506;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-1.337;QD=18.60;ReadPosRankSum=3.382;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:4,177:182:99:3385,357,0 chrII 626092 . A G 6041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=243;Dels=0.00;FS=8.170;HaplotypeScore=10.4992;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.611;QD=24.86;ReadPosRankSum=2.409;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:2,238:243:99:6041,640,0 chrII 627055 . A T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4461,480,0 chrII 628254 . C T 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.468;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.7622;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.256;QD=19.85;ReadPosRankSum=-1.150;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2693,279,0 chrII 629013 . G A 1091 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:46:99:1124,120,0 chrII 629145 . A G 2028 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=24.14;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2061,231,0 chrII 629259 . G A 5255.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.28;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:5255,538,0 chrII 629365 . C T 3515.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.2035;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=23.28;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3515,361,0 chrII 629376 . T C 3029 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=20.19;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3062,336,0 chrII 629684 . C T 2819 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=22.55;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2852,294,0 chrII 629692 . G A 2527 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=20.54;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2560,264,0 chrII 629701 . C T 2571 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=20.24;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2604,267,0 chrII 629731 . C T 2498 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=18.37;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2531,264,0 chrII 629782 . T C 4101.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.41;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4101,438,0 chrII 630052 . C T 4198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=3.754;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.416;QD=21.20;ReadPosRankSum=-0.783;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4198,450,0 chrII 631243 . C T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.11;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3448,369,0 chrII 631668 . T C 2356 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.80;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2389,249,0 chrII 632170 . G A 1714 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1747,180,0 chrII 632685 . G A 3974.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.1125;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.64;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3974,403,0 chrII 634473 . T A 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.3693;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.449;QD=23.20;ReadPosRankSum=1.711;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3781,394,0 chrII 636545 . A G 4393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=177;Dels=0.00;FS=2.847;HaplotypeScore=5.7925;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.256;QD=24.82;ReadPosRankSum=2.422;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4393,463,0 chrII 636645 . G A 4775.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.87;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4775,496,0 chrII 637414 . T C 5609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=251;Dels=0.00;FS=3.997;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.263;QD=22.35;ReadPosRankSum=1.691;SB=-2.802e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5609,615,0 chrII 637624 . C T 3369.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=17.4235;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.46;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3369,351,0 chrII 637861 . G A 3805.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.63;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3805,399,0 chrII 638068 . T A 5274.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.54;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5274,538,0 chrII 638086 . A G 5273.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=5.6286;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.53;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5273,559,0 chrII 638530 . G A 4512.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=16.1022;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.00;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4512,475,0 chrII 638591 . T C 4650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=190;Dels=0.00;FS=2.565;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.688;QD=24.47;ReadPosRankSum=2.931;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:3,187:190:99:4650,499,0 chrII 638716 . A G 4860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=230;Dels=0.01;FS=3.068;HaplotypeScore=12.0582;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.969;QD=21.13;ReadPosRankSum=1.717;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:4860,514,0 chrII 638730 . C T 4913.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.47;SB=-3.070e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:4913,523,0 chrII 639238 . A G 3342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.254;QD=23.21;ReadPosRankSum=1.635;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3342,348,0 chrII 639544 . A T 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=3.401;HaplotypeScore=7.0907;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.686;QD=23.84;ReadPosRankSum=1.686;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3624,373,0 chrII 639700 . C T 5252.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=13.8112;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.98;SB=-2.942e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5252,538,0 chrII 639745 . G A 4001.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.8228;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4001,412,0 chrII 639793 . G A 3697.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.68;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,159:163:99:3697,399,0 chrII 639832 . G A 4453.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.7577;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.81;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4453,474,0 chrII 640153 . G A 4273.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.87;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4273,445,0 chrII 641071 . T G 3556.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=21.68;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3556,381,0 chrII 641080 . T A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.07;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3414,354,0 chrII 641553 . C T 4984.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.8653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4984,520,0 chrII 642728 . T G 5746.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=5.2055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.54;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5746,607,0 chrII 642773 . G A 4963.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.3539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4963,537,0 chrII 643134 . G A 2706 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=22.74;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2739,282,0 chrII 643138 . C A 2555 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=22.81;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2588,273,0 chrII 643176 . G A 2398 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=22.62;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2431,255,0 chrII 643379 . A T 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;DP=23;Dels=0.00;FS=5.969;HaplotypeScore=5.1447;MLEAC=1;MLEAF=0.500;MQ=34.86;MQ0=0;MQRankSum=1.871;QD=1.04;ReadPosRankSum=-1.415;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,3:23:54:54,0,191 chrII 643380 . C G 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.052;DP=22;Dels=0.00;FS=5.643;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=33.27;MQ0=0;MQRankSum=2.200;QD=0.87;ReadPosRankSum=-2.200;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,3:22:49:49,0,205 chrII 643432 . G A 1546 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;QD=23.07;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1579,165,0 chrII 643528 . A G 187.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.554;DP=110;Dels=0.00;FS=153.073;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=12;MQRankSum=-4.368;QD=1.70;ReadPosRankSum=-0.110;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,37:110:99:217,0,1278 chrII 643530 . A G 178.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.690;DP=113;Dels=0.00;FS=153.073;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.62;MQ0=15;MQRankSum=-4.346;QD=1.58;ReadPosRankSum=-0.308;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:75,37:113:99:208,0,1221 chrII 643532 . T G 184.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.283;DP=116;Dels=0.00;FS=153.073;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.24;MQ0=18;MQRankSum=-4.566;QD=1.59;ReadPosRankSum=-0.293;SB=-6.517e-03 GT:AD:DP:GQ:PL 0/1:79,37:116:99:214,0,1245 chrII 643596 . C T 579.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.288;DP=116;Dels=0.00;FS=18.608;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.33;MQ0=49;MQRankSum=1.044;QD=4.99;ReadPosRankSum=4.038;SB=-1.200e+02 GT:AD:DP:GQ:PL 0/1:73,43:116:99:609,0,257 chrII 643780 . T G 129.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=21.10;MQ0=17;MQRankSum=2.186;QD=2.87;ReadPosRankSum=-0.180;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,11:45:99:159,0,131 chrII 643808 . G A 111.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=1;QD=13.91;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:144,15,0 chrII 643809 . A G 108.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=1;QD=13.53;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:1,7:8:15:141,15,0 chrII 646099 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=4.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:51,6,0 chrII 646843 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.48;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3593,381,0 chrII 646938 . G A 4625.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.73;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4625,490,0 chrII 647888 . G T 2055 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2088,219,0 chrII 648179 . A C 3919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.612;DP=174;Dels=0.00;FS=3.747;HaplotypeScore=11.9713;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.151;QD=22.52;ReadPosRankSum=1.672;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3919,397,0 chrII 648386 . G T 3739.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.7323;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.22;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3739,388,0 chrII 649196 . T C 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.552;QD=19.35;ReadPosRankSum=1.706;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2684,288,0 chrII 649369 . A C 4541.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.4589;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=23.29;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4541,489,0 chrII 649517 . A T 7446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=292;Dels=0.00;FS=4.427;HaplotypeScore=14.5151;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.815;QD=25.50;ReadPosRankSum=1.684;SB=-2.933e+03 GT:AD:DP:GQ:PL 1/1:1,291:292:99:7446,766,0 chrII 649640 . C A 7726.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=22.9958;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.41;SB=-4.416e+03 GT:AD:DP:GQ:PL 1/1:0,326:330:99:7726,802,0 chrII 649732 . T C 6233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=271;Dels=0.00;FS=13.241;HaplotypeScore=14.5736;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.675;QD=23.00;ReadPosRankSum=2.967;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:3,266:271:99:6233,667,0 chrII 649970 . A G 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.271;DP=123;Dels=0.00;FS=8.296;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.344;QD=21.54;ReadPosRankSum=3.386;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:4,118:123:99:2683,288,0 chrII 650003 . C T 2809 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=24.64;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2842,291,0 chrII 650411 . A G 2533 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=25.85;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2566,267,0 chrII 650619 . A G 4672.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.9702;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4672,496,0 chrII 650970 . T C 6182.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.843;QD=23.51;ReadPosRankSum=1.706;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:1,260:263:99:6182,672,0 chrII 650998 . G A 6026.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=7.9871;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.54;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,252:256:99:6026,622,0 chrII 651379 . C T 4440.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.0200;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.94;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4440,463,0 chrII 651616 . T A 5675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=291;Dels=0.00;FS=4.220;HaplotypeScore=9.0695;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.589;QD=19.50;ReadPosRankSum=1.672;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:1,290:291:99:5675,613,0 chrII 652362 . C T 4073.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4073,421,0 chrII 652467 . T C 4274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=186;Dels=0.00;FS=3.156;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.142;QD=22.98;ReadPosRankSum=1.694;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:1,181:186:99:4274,450,0 chrII 652587 . T C 5996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.747;DP=248;Dels=0.00;FS=7.875;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.028;QD=24.18;ReadPosRankSum=3.773;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:5,243:248:99:5996,649,0 chrII 652686 . T C 6758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=18.5110;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.331;QD=22.99;ReadPosRankSum=1.708;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:1,293:294:99:6758,709,0 chrII 652830 . T C 5832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=304;Dels=0.00;FS=3.860;HaplotypeScore=14.3453;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.068;QD=19.18;ReadPosRankSum=1.721;SB=-3.257e+03 GT:AD:DP:GQ:PL 1/1:1,303:304:99:5832,613,0 chrII 652974 . A G 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-0.368;QD=15.87;ReadPosRankSum=2.926;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:3,199:203:99:3254,345,0 chrII 652982 . G A 2994 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=15.35;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3027,315,0 chrII 653007 . G A 2586 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.5336;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=14.95;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:2619,273,0 chrII 653133 . C T 3325.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.45;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3325,345,0 chrII 653440 . C T 3047 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.18;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:3080,318,0 chrII 653862 . G C 3811.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.27;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3811,405,0 chrII 654025 . G A 2980 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3013,330,0 chrII 654072 . G A 3119 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.45;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3152,325,0 chrII 654331 . G A 3641.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.44;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3641,376,0 chrII 654500 . G A 1928 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.6904;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.36;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:1961,207,0 chrII 655447 . C G 2822 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=19.87;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2855,306,0 chrII 655451 . G A 2844 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.31;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2877,306,0 chrII 655909 . C T 3924.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.4849;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.08;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3924,420,0 chrII 656242 . A G 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.356;QD=24.12;ReadPosRankSum=1.705;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3145,333,0 chrII 656473 . A G 3058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=122;Dels=0.00;FS=7.833;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.092;QD=25.07;ReadPosRankSum=2.388;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:2,118:122:99:3091,333,0 chrII 656530 . G A 3286.01 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.16;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3286,342,0 chrII 657139 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.500;QD=23.53;ReadPosRankSum=-1.527;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3256,354,0 chrII 657582 . T A 4592.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=17.7585;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.30;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4592,472,0 chrII 657790 . T A 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.723;QD=22.64;ReadPosRankSum=1.047;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3374,346,0 chrII 657796 . A C 3126 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.70;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3159,330,0 chrII 658057 . A G 3830.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=24.24;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3830,414,0 chrII 658351 . G A 3632.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.13;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3632,384,0 chrII 658648 . G C 3534.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3534,372,0 chrII 658797 . G A 4518.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.2472;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.67;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4518,469,0 chrII 660237 . A G 5051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=220;Dels=0.00;FS=8.458;HaplotypeScore=13.6944;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=3;MQRankSum=1.204;QD=22.96;ReadPosRankSum=2.426;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:2,209:220:99:5051,541,0 chrII 660728 . G A 3979.01 filter AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.6206;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=15;QD=20.20;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3979,415,0 chrII 660819 . C T 5368.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=26.44;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5368,562,0 chrII 660972 . C T 4271.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.4741;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.48;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4271,439,0 chrII 661314 . T C 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.292;DP=158;Dels=0.00;FS=9.173;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.019;QD=21.37;ReadPosRankSum=3.403;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:4,153:158:99:3376,369,0 chrII 661374 . T C 4707.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=24.26;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4707,504,0 chrII 661608 . A G 7499.01 filter AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=21.4624;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=4;QD=23.58;SB=-3.207e+03 GT:AD:DP:GQ:PL 1/1:4,313:318:99:7499,808,0 chrII 662094 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.9250;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.42;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3287,360,0 chrII 662272 . C T 3429.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.3571;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.33;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3429,352,0 chrII 662444 . G A 1841 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1874,192,0 chrII 662524 . C A 2671 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.72;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2704,279,0 chrII 662726 . G T 2320 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.83;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2353,258,0 chrII 662749 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=19.25;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2151,234,0 chrII 662769 . G T 2250 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.27;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,107:111:99:2283,246,0 chrII 662802 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.67;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2568,267,0 chrII 663297 . A G 6046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.116;QD=22.82;ReadPosRankSum=2.412;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:2,262:265:99:6046,640,0 chrII 663412 . A G 4082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=175;Dels=0.00;FS=5.689;HaplotypeScore=17.5248;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.413;QD=23.33;ReadPosRankSum=2.960;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:3,170:175:99:4082,435,0 chrII 663478 . C T 3788.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3788,394,0 chrII 663685 . C T 4244.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.4760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4244,448,0 chrII 664018 . T C 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=167;Dels=0.00;FS=3.027;HaplotypeScore=16.3009;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.215;QD=23.92;ReadPosRankSum=2.376;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3994,429,0 chrII 664165 . T C 5045.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5045,552,0 chrII 664444 . C A 5327.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=12.1982;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.57;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5327,550,0 chrII 664500 . T C 4669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=199;Dels=0.00;FS=11.420;HaplotypeScore=8.7528;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.173;QD=23.46;ReadPosRankSum=2.965;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:4669,499,0 chrII 669586 . T A 3871.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.14;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3871,397,0 chrII 669668 . G A 4579.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.49;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4579,472,0 chrII 670302 . G A 5487.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=18.3575;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.49;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5487,586,0 chrII 671376 . T C 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.643;QD=24.16;ReadPosRankSum=1.666;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2594,276,0 chrII 672354 . C T 2607 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.47;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2640,273,0 chrII 672487 . T C 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=105;Dels=0.00;FS=2.808;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=1.465;QD=23.40;ReadPosRankSum=2.403;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2490,264,0 chrII 672540 . G A 2286 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=22.41;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2319,246,0 chrII 672553 . T C 2359 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.64;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2392,255,0 chrII 673390 . G T 2123 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2156,222,0 chrII 674076 . A G 2954 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2987,330,0 chrII 674295 . T A 3996.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3996,418,0 chrII 674890 . C T 4043.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.84;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4043,415,0 chrII 674940 . A G 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=168;Dels=0.00;FS=3.010;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.522;QD=23.59;ReadPosRankSum=2.420;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3963,423,0 chrII 676110 . G A 2814 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.7876;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=23.45;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2847,303,0 chrII 676125 . T C 2844 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=24.73;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2877,306,0 chrII 677266 . T C 4240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=187;Dels=0.00;FS=6.082;HaplotypeScore=13.6300;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.242;QD=22.67;ReadPosRankSum=2.920;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:4240,465,0 chrII 677644 . C G 3426.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3426,372,0 chrII 677719 . A G 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=125;Dels=0.00;FS=2.942;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.690;QD=21.46;ReadPosRankSum=2.370;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2715,288,0 chrII 678105 . C T 4274.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4274,459,0 chrII 678386 . G A 5512.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.9279;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.39;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5512,571,0 chrII 678595 . T A 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=161;Dels=0.00;FS=11.178;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.475;QD=21.04;ReadPosRankSum=2.905;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3387,360,0 chrII 678648 . C T 4095.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,166:171:99:4095,430,0 chrII 678799 . C T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.32;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3794,394,0 chrII 679276 . A C 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=150;Dels=0.00;FS=2.586;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.047;QD=19.17;ReadPosRankSum=2.939;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:3,146:150:99:2908,324,0 chrII 680550 . T C 3498.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=19.54;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3498,393,0 chrII 680726 . A G 2432 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.61;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2465,273,0 chrII 680934 . C T 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.9254;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.829;QD=25.76;ReadPosRankSum=0.732;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3683,379,0 chrII 681414 . A G 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=129;Dels=0.00;FS=6.043;HaplotypeScore=9.2402;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.803;QD=21.20;ReadPosRankSum=2.898;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:3,125:129:99:2768,306,0 chrII 681557 . G A 3503.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.50;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3503,361,0 chrII 681758 . T G 3104 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.03;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3137,330,0 chrII 682449 . T C 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=181;Dels=0.00;FS=7.923;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.391;QD=22.24;ReadPosRankSum=2.355;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4025,424,0 chrII 683515 . G A 4763.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=16.5687;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.75;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4763,522,0 chrII 683592 . C T 4878.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.90;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4878,511,0 chrII 683805 . A G 4939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=218;Dels=0.00;FS=6.077;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.037;QD=22.66;ReadPosRankSum=2.876;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:3,215:218:99:4939,537,0 chrII 684271 . T C 4164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.9117;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.542;QD=25.24;ReadPosRankSum=1.711;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:4164,439,0 chrII 684747 . G A 1226 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=17.51;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1259,129,0 chrII 684750 . A G 1205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;MQRankSum=-1.732;QD=16.74;ReadPosRankSum=1.684;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1238,132,0 chrII 684966 . G A 2851 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.76;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2884,315,0 chrII 684988 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=152;Dels=0.00;FS=2.654;HaplotypeScore=9.1895;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-0.202;QD=22.57;ReadPosRankSum=2.385;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3430,366,0 chrII 685165 . A G 5096.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.0380;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=25.61;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:5096,541,0 chrII 685306 . T C 3634.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,158:162:99:3634,387,0 chrII 685681 . G A 4119.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4119,424,0 chrII 686221 . A G 5893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.285;DP=259;Dels=0.00;FS=14.788;HaplotypeScore=14.3992;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.753;QD=22.75;ReadPosRankSum=3.380;SB=-2.928e+03 GT:AD:DP:GQ:PL 1/1:4,254:259:99:5893,654,0 chrII 686563 . G A 5132.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=16.3064;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5132,535,0 chrII 686624 . C T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.9885;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3774,391,0 chrII 686757 . A G 4546.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.4608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4546,487,0 chrII 687377 . T C 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=173;Dels=0.00;FS=5.845;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.819;QD=23.99;ReadPosRankSum=2.936;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:99:4151,436,0 chrII 687494 . A G 4551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.4426;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.003;QD=21.57;ReadPosRankSum=1.682;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:1,208:211:99:4551,498,0 chrII 687872 . T A 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.8316;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.302;QD=23.68;ReadPosRankSum=1.708;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3457,366,0 chrII 689156 . C T 4355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=177;Dels=0.00;FS=3.215;HaplotypeScore=15.1204;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.015;QD=24.60;ReadPosRankSum=1.314;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:4355,434,0 chrII 689378 . C T 3673.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.81;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3673,390,0 chrII 690537 . C T 3418.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.74;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3418,349,0 chrII 690623 . A G 2520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=109;Dels=0.00;FS=2.748;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.314;QD=23.12;ReadPosRankSum=2.359;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2553,273,0 chrII 690731 . C T 3676.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.8515;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3676,376,0 chrII 691240 . C T 3835.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.74;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3835,402,0 chrII 691543 . G C 4930.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.0822;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4930,523,0 chrII 692083 . C A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3373,349,0 chrII 693243 . T C 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=155;Dels=0.00;FS=3.424;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.575;QD=21.99;ReadPosRankSum=1.710;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3408,375,0 chrII 693469 . C G 4357.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4357,486,0 chrII 693556 . A G 3361.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.90;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3361,357,0 chrII 694151 . T A 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=6.575;HaplotypeScore=5.8819;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.401;QD=21.97;ReadPosRankSum=2.414;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3065,315,0 chrII 694160 . C T 3090 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.76;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3123,324,0 chrII 694260 . G A 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.6310;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.014;QD=24.06;ReadPosRankSum=-0.513;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3089,295,0 chrII 694398 . C T 2437 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4002;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=24.87;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2470,255,0 chrII 694512 . A G 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.9721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.579;QD=22.60;ReadPosRankSum=1.681;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1570,171,0 chrII 694802 . A T 581 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.21;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:66:614,66,0 chrII 695479 . G A 3712.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.9017;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.63;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3712,388,0 chrII 696878 . T A 4485.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.0357;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.73;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4485,466,0 chrII 697455 . C T 2915 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2948,301,0 chrII 697503 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.4681;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.33;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3800,388,0 chrII 697710 . T G 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=153;Dels=0.00;FS=3.372;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.554;QD=24.78;ReadPosRankSum=1.709;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,149:153:99:3792,402,0 chrII 699461 . G A 4649.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=16.6575;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,191:195:99:4649,481,0 chrII 699560 . T C 5664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=231;Dels=0.00;FS=2.575;HaplotypeScore=22.4159;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.568;QD=24.52;ReadPosRankSum=2.917;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:3,227:231:99:5664,601,0 chrII 699878 . A G 3776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.202;DP=185;Dels=0.00;FS=5.248;HaplotypeScore=16.6521;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.787;QD=20.41;ReadPosRankSum=3.383;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:4,179:185:99:3776,399,0 chrII 700005 . A G 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.843;QD=24.80;ReadPosRankSum=1.701;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2835,297,0 chrII 700109 . T A 1806 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4841;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.00;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1839,198,0 chrII 700117 . T C 1633 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.5294;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.41;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1666,180,0 chrII 700199 . A T 383 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=9.57;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:45:416,45,0 chrII 700246 . T C 655 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:75:688,75,0 chrII 700423 . T C 1742 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1775,192,0 chrII 700535 . C T 4587.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0658;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.51;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4587,475,0 chrII 700979 . A G 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=160;Dels=0.00;FS=2.962;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-2.063;QD=20.49;ReadPosRankSum=2.388;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3279,357,0 chrII 701135 . T C 4052.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.6707;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.15;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4052,432,0 chrII 701195 . C T 4123.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.62;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4123,430,0 chrII 701207 . C T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.62;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3669,387,0 chrII 701303 . G A 6237.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=11.0624;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.95;SB=-2.834e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:6237,652,0 chrII 701354 . A G 5467.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=9.1286;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.68;SB=-2.928e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5467,574,0 chrII 701832 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=19.63;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2664,276,0 chrII 702004 . T C 119.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=14.89;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:152,18,0 chrII 702504 . C T 5890.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.90;SB=-2.881e+03 GT:AD:DP:GQ:PL 1/1:0,267:269:99:5890,604,0 chrII 702521 . T G 5966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.810;DP=274;Dels=0.00;FS=6.069;HaplotypeScore=20.7790;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-1.732;QD=21.77;ReadPosRankSum=2.974;SB=-3.537e+03 GT:AD:DP:GQ:PL 1/1:3,267:274:99:5966,628,0 chrII 702600 . C T 8183.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=19.3567;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.23;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,309:312:99:8183,856,0 chrII 702673 . A G 6398.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=13.5496;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.70;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:6398,711,0 chrII 703042 . A G 6491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=300;Dels=0.00;FS=2.616;HaplotypeScore=20.1521;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.100;QD=21.64;ReadPosRankSum=2.425;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:2,298:300:99:6491,691,0 chrII 703256 . C G 4130.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=20.9839;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.45;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4130,456,0 chrII 703622 . C T 7139.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=14.4023;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=25.77;SB=-3.751e+03 GT:AD:DP:GQ:PL 1/1:0,275:277:99:7139,730,0 chrII 703780 . A G 5891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-1.548;QD=19.44;ReadPosRankSum=1.698;SB=-3.900e+03 GT:AD:DP:GQ:PL 1/1:1,300:303:99:5891,622,0 chrII 703783 . C T 6051.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=4.9268;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=20.04;SB=-4.045e+03 GT:AD:DP:GQ:PL 1/1:0,302:302:99:6051,628,0 chrII 703879 . T C 4676.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.16;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4676,519,0 chrII 703999 . T C 4861.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=14.2469;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=22.00;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4861,531,0 chrII 704219 . T C 2980 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.58;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3013,324,0 chrII 704282 . T A 3033 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.30;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3066,327,0 chrII 704358 . G T 2136 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.47;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:2169,222,0 chrII 704507 . A T 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=75;Dels=0.01;FS=11.852;HaplotypeScore=17.9232;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=0.570;QD=19.91;ReadPosRankSum=2.904;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:3,71:74:99:1526,159,0 chrII 704528 . C T 1876 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=26.06;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1909,195,0 chrII 704536 . C A 1805 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=23.14;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1838,198,0 chrII 704560 . C T 2171 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4307;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.60;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2204,228,0 chrII 704922 . A G 5283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=234;Dels=0.00;FS=4.260;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=1.299;QD=22.58;ReadPosRankSum=1.687;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:1,231:234:99:5283,547,0 chrII 704939 . G A 5706.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=13.4112;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.55;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5706,613,0 chrII 705275 . C T 3860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=156;Dels=0.00;FS=3.363;HaplotypeScore=9.8322;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=1.710;QD=24.74;ReadPosRankSum=1.665;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3860,403,0 chrII 705302 . A C 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=181;Dels=0.00;FS=3.439;HaplotypeScore=10.5963;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.502;QD=23.00;ReadPosRankSum=0.813;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4163,440,0 chrII 705344 . C T 4613.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.28;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4613,475,0 chrII 705627 . A G 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=168;Dels=0.00;FS=2.584;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.012;QD=22.56;ReadPosRankSum=2.958;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3790,400,0 chrII 705633 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=22.61;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3844,397,0 chrII 706113 . A G 4668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=216;Dels=0.00;FS=6.082;HaplotypeScore=16.6655;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.127;QD=21.61;ReadPosRankSum=2.939;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:3,210:216:99:4668,522,0 chrII 706449 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=146;Dels=0.00;FS=5.671;HaplotypeScore=11.4609;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.285;QD=22.98;ReadPosRankSum=2.910;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:3,142:146:99:3355,357,0 chrII 706983 . G A 3209.99 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.31;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3243,339,0 chrII 707207 . A G 2590 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.95;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2623,288,0 chrII 707436 . G A 2698 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.08;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2731,291,0 chrII 707452 . G T 2948 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.3811;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.33;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2981,306,0 chrII 708202 . C T 3372.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.55;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3372,349,0 chrII 708294 . C T 4084.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.0870;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4084,421,0 chrII 708750 . G A 3011 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3044,318,0 chrII 708909 . A G 3774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=173;Dels=0.00;FS=4.185;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.190;QD=21.82;ReadPosRankSum=1.632;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3774,420,0 chrII 708952 . T C 4431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.002;QD=23.82;ReadPosRankSum=1.713;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4431,469,0 chrII 709993 . T C 3822.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.50;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3822,405,0 chrII 710109 . A G 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.357;QD=22.40;ReadPosRankSum=1.644;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:1,156:160:99:3584,378,0 chrII 710907 . A G 5478.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.0928;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=25.96;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5478,583,0 chrII 711099 . G A 5048.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=16.1037;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.04;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,225:229:99:5048,538,0 chrII 711182 . T C 3515.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.68;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3515,384,0 chrII 711231 . T C 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=4.247;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.814;QD=24.43;ReadPosRankSum=1.673;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2891,303,0 chrII 711432 . G A 2023 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.64;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2056,213,0 chrII 711439 . T C 1965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-0.555;QD=18.89;ReadPosRankSum=1.698;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:1998,213,0 chrII 711551 . T A 2909 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=19.66;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2942,312,0 chrII 711554 . A G 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=4.085;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-1.447;QD=18.85;ReadPosRankSum=1.708;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:2823,303,0 chrII 711722 . G A 4686.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=24.93;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4686,481,0 chrII 711792 . C T 4328.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.7420;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=21.64;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4328,442,0 chrII 711804 . T C 4649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=229;Dels=0.00;FS=3.025;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=0.241;QD=20.30;ReadPosRankSum=2.428;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:4649,493,0 chrII 711873 . C G 5202.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.15;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5202,547,0 chrII 712022 . C G 206.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181;DP=175;Dels=0.00;FS=256.776;HaplotypeScore=12.4984;MLEAC=1;MLEAF=0.500;MQ=55.21;MQ0=0;MQRankSum=2.079;QD=1.18;ReadPosRankSum=-8.098;SB=-3.006e+00 GT:AD:DP:GQ:PL 0/1:133,39:175:99:236,0,2092 chrII 712082 . G A 3554.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.8142;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.94;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3554,369,0 chrII 712145 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=158;Dels=0.00;FS=7.249;HaplotypeScore=11.3305;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-0.134;QD=20.89;ReadPosRankSum=2.418;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3300,345,0 chrII 712159 . G A 3383.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.8098;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.83;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3383,349,0 chrII 712229 . C T 4068.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=24.36;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4068,424,0 chrII 712259 . A G 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.583;HaplotypeScore=8.7579;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-0.492;QD=23.56;ReadPosRankSum=1.711;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3840,403,0 chrII 712456 . C A 4295.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.7666;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=23.34;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4295,442,0 chrII 712466 . C A 3855.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.84;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3855,403,0 chrII 712622 . C A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.57;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3611,378,0 chrII 712854 . G T 2353 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=19.45;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2386,255,0 chrII 712877 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.34;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2670,276,0 chrII 713038 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-0.525;QD=25.05;ReadPosRankSum=1.706;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3332,348,0 chrII 713316 . A G 3197 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=15.3067;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.05;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3230,354,0 chrII 713451 . C T 4063.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=27.27;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4063,424,0 chrII 713781 . C T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=20.0922;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.39;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3743,393,0 chrII 714130 . G C 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.3697;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-1.651;QD=18.14;ReadPosRankSum=1.342;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:3883,429,0 chrII 714131 . C G 3809.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=4.4313;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=17.47;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,211:217:99:3809,429,0 chrII 714536 . A G 3111 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;QD=23.57;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3144,348,0 chrII 714638 . T G 1985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=95;Dels=0.00;FS=2.680;HaplotypeScore=9.3195;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.087;QD=20.89;ReadPosRankSum=2.397;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2018,219,0 chrII 715332 . A C 5481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=244;Dels=0.00;FS=6.554;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.031;QD=22.46;ReadPosRankSum=2.359;SB=-3.153e+03 GT:AD:DP:GQ:PL 1/1:2,242:244:99:5481,577,0 chrII 715932 . A G 3224.03 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3257,348,0 chrII 716328 . A G 2977 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.26;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3010,321,0 chrII 716467 . C T 2432 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.6124;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.00;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2465,255,0 chrII 716483 . G A 2393 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=9.2206;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=18.99;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2426,258,0 chrII 716492 . T C 2535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.764;DP=134;Dels=0.00;FS=6.045;HaplotypeScore=13.5055;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-0.107;QD=18.92;ReadPosRankSum=2.916;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:3,129:134:99:2568,276,0 chrII 716546 . A G 3197 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.36;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3230,342,0 chrII 716856 . C T 4402.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4402,454,0 chrII 716927 . T C 4620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=189;Dels=0.00;FS=2.425;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.303;QD=24.44;ReadPosRankSum=2.963;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:3,186:189:99:4620,490,0 chrII 717374 . G A 6604.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=18.6829;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.59;SB=-2.886e+03 GT:AD:DP:GQ:PL 1/1:0,277:279:99:6604,682,0 chrII 717439 . G A 6883.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=16.0613;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.03;SB=-2.894e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:6883,709,0 chrII 717754 . G A 5043.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.8133;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.73;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:5043,523,0 chrII 717953 . C A 3208 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.30;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3241,336,0 chrII 718117 . G A 2601 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.54;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2634,273,0 chrII 718258 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.48;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2827,291,0 chrII 718307 . T C 3007 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=19.15;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3040,324,0 chrII 718308 . T A 3112 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=19.70;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3145,325,0 chrII 718330 . A G 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=170;Dels=0.00;FS=4.824;HaplotypeScore=5.4617;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-1.048;QD=18.81;ReadPosRankSum=1.691;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,166:170:99:3231,357,0 chrII 718413 . G A 4637.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.35;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4637,475,0 chrII 718453 . T G 4822.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.0427;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.48;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4822,516,0 chrII 718501 . T A 4482.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.9568;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=23.59;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4482,460,0 chrII 718548 . T C 4225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=191;Dels=0.00;FS=7.177;HaplotypeScore=15.0847;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=1.891;QD=22.12;ReadPosRankSum=2.424;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4225,448,0 chrII 718621 . C T 4470.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.1328;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=25.25;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4470,454,0 chrII 718656 . A T 3875.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4035;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.48;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3875,397,0 chrII 718700 . T C 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.3631;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.873;QD=22.82;ReadPosRankSum=2.112;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3023,315,0 chrII 718770 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=4.301;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-1.311;QD=23.46;ReadPosRankSum=1.707;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3308,357,0 chrII 718802 . T C 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=136;Dels=0.00;FS=8.509;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=0.064;QD=20.30;ReadPosRankSum=2.413;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2794,300,0 chrII 718805 . C T 2859 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=20.57;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2892,295,0 chrII 718909 . T C 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8612;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.009;QD=22.31;ReadPosRankSum=2.379;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3179,345,0 chrII 719463 . C T 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=4.351;HaplotypeScore=8.2042;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.434;QD=25.84;ReadPosRankSum=1.705;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3308,342,0 chrII 719518 . G A 2707 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.5725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2740,285,0 chrII 719701 . A G 2732 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2765,306,0 chrII 719773 . T C 2698 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.67;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2731,297,0 chrII 719899 . T C 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.175;DP=146;Dels=0.00;FS=6.102;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.084;QD=23.59;ReadPosRankSum=1.804;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:3,141:146:99:3444,343,0 chrII 720010 . G T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.81;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3920,420,0 chrII 720178 . A G 4526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.5430;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.025;QD=23.45;ReadPosRankSum=1.641;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:4526,486,0 chrII 720340 . A G 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.424;QD=23.74;ReadPosRankSum=1.613;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3466,369,0 chrII 720379 . A G 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=16.1027;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.388;QD=22.41;ReadPosRankSum=1.692;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3854,420,0 chrII 720615 . C T 2505 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2538,261,0 chrII 720905 . A G 3174 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.59;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3207,333,0 chrII 720973 . A G 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.413;QD=24.21;ReadPosRankSum=1.708;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3413,360,0 chrII 721063 . A C 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.9350;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;MQRankSum=0.099;QD=20.33;ReadPosRankSum=1.704;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2533,267,0 chrII 721077 . G A 2291 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=18.48;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2324,249,0 chrII 721088 . C T 2363 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;QD=18.04;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2396,246,0 chrII 721115 . C A 1845 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=110.6150;MLEAC=2;MLEAF=1.00;MQ=41.71;MQ0=0;QD=13.98;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1878,198,0 chrII 721141 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.79;MQ0=0;QD=14.34;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:1797,189,0 chrII 721162 . G A 2157 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=17.12;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2190,228,0 chrII 721536 . T C 4759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.559;QD=25.18;ReadPosRankSum=1.659;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4759,496,0 chrII 721863 . T C 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=185;Dels=0.00;FS=3.405;HaplotypeScore=19.2029;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.941;QD=22.49;ReadPosRankSum=1.713;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4160,453,0 chrII 721938 . A G 3464.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.5688;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.94;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3464,378,0 chrII 721962 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5650;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.28;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3399,363,0 chrII 722315 . A G 3782.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=24.72;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3782,408,0 chrII 722533 . C T 2390 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=22.34;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2423,252,0 chrII 722546 . A C 2229 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;QD=18.89;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2262,243,0 chrII 722547 . G A 2295 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=19.29;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2328,243,0 chrII 722576 . G A 2130 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;QD=14.69;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2163,231,0 chrII 722589 . C T 2210 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;QD=14.54;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2243,237,0 chrII 722617 . G A 2433 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=13.98;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2466,264,0 chrII 722635 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=17.19;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3110,321,0 chrII 723102 . G C 3751.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.36;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3751,414,0 chrII 723175 . G C 5375.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=19.0091;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=24.10;SB=-2.922e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:5375,565,0 chrII 723232 . G A 4558.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.14;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4558,489,0 chrII 723385 . G A 2905 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=17.61;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2938,303,0 chrII 723393 . G A 2942 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=16.81;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2975,309,0 chrII 723401 . A G 2493 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;QD=14.93;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:2526,273,0 chrII 723419 . G T 2874 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=16.33;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:2907,303,0 chrII 723454 . C T 3517.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=19.76;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3517,361,0 chrII 723865 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.72;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3345,351,0 chrII 723949 . G A 4833.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.04;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4833,496,0 chrII 724009 . A G 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=18.8624;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.151;QD=22.53;ReadPosRankSum=1.674;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4032,435,0 chrII 724096 . A G 3909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.876;QD=21.96;ReadPosRankSum=1.713;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3909,414,0 chrII 724291 . T C 3697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.729;DP=164;Dels=0.00;FS=16.304;HaplotypeScore=10.3380;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.265;QD=22.54;ReadPosRankSum=3.720;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:5,158:164:99:3697,399,0 chrII 724613 . T G 3673.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.24;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3673,393,0 chrII 724679 . A G 3503.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.99;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3503,387,0 chrII 724784 . A G 2764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.760;QD=24.25;ReadPosRankSum=1.671;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2797,300,0 chrII 724953 . G A 3105 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=14.2737;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.26;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:3138,327,0 chrII 725168 . A G 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=178;Dels=0.00;FS=3.583;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.409;QD=20.21;ReadPosRankSum=1.693;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3598,399,0 chrII 725223 . G A 5225.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=8.2626;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=22.23;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5225,567,0 chrII 725450 . G T 3661.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.79;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3661,379,0 chrII 725454 . T C 3572.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.91;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3572,372,0 chrII 725631 . T C 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=152;Dels=0.00;FS=3.529;HaplotypeScore=9.7022;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.594;QD=22.09;ReadPosRankSum=-0.264;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3358,375,0 chrII 725754 . C T 4566.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.66;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4566,487,0 chrII 726575 . C T 3494.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.3486;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3494,364,0 chrII 726633 . G A 3011 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.68;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3044,313,0 chrII 726888 . G A 5012.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.06;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5012,523,0 chrII 726985 . C A 3911.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=267.1893;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=23.85;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3911,406,0 chrII 727258 . A G 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=1.477;QD=21.85;ReadPosRankSum=1.707;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3005,318,0 chrII 727268 . C T 2977 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.22;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3010,312,0 chrII 727326 . C T 2390 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.43;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2423,261,0 chrII 727581 . G A 2618 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.96;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2651,288,0 chrII 727716 . A G 3411.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.27;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3411,363,0 chrII 727755 . G A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.76;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3912,406,0 chrII 727844 . G T 3371.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=21.47;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3371,351,0 chrII 727845 . G T 3338.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=21.40;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3338,351,0 chrII 727866 . G A 3124 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=20.03;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3157,327,0 chrII 727938 . A G 4341.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.21;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4341,468,0 chrII 728043 . G A 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.372;DP=154;Dels=0.00;FS=3.242;HaplotypeScore=9.4980;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-1.395;QD=22.53;ReadPosRankSum=-0.382;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3469,347,0 chrII 728070 . A G 2910 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=21.09;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2943,330,0 chrII 728076 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=20.37;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2967,324,0 chrII 728104 . G A 2877 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=19.98;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2910,315,0 chrII 728251 . G A 2664 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=23.37;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2697,285,0 chrII 728314 . C T 2184 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=22.06;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2217,240,0 chrII 728328 . C T 2068 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=21.10;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2101,231,0 chrII 728335 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=22.54;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2174,228,0 chrII 728411 . C T 1696 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=22.92;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1729,177,0 chrII 728435 . G A 1608 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.9435;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=21.16;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1641,171,0 chrII 728481 . G A 1815 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=18.33;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1848,198,0 chrII 728495 . A T 1823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.01;FS=3.407;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;MQRankSum=-0.118;QD=17.53;ReadPosRankSum=1.698;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1856,189,0 chrII 728499 . C A 1747 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=16.96;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1780,192,0 chrII 728585 . G C 1810 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=20.34;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1843,195,0 chrII 728589 . A T 1723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=5.366;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=-1.047;QD=20.03;ReadPosRankSum=1.652;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1756,183,0 chrII 728613 . A G 1703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=4.999;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=1.202;QD=17.20;ReadPosRankSum=1.697;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1736,192,0 chrII 728657 . T C 1767 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=20.08;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1800,189,0 chrII 728757 . T C 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.3236;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-1.110;QD=20.91;ReadPosRankSum=1.678;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2730,303,0 chrII 728914 . C A 2894 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=23.34;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2927,297,0 chrII 728932 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.29;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2715,276,0 chrII 728941 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.46;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2796,285,0 chrII 728992 . G A 2679 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=22.70;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2712,285,0 chrII 729198 . A G 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.2031;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.108;QD=25.86;ReadPosRankSum=-1.108;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2929,306,0 chrII 729547 . A G 3773.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.82;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3773,399,0 chrII 730031 . T C 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.468;QD=24.48;ReadPosRankSum=1.656;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:3403,357,0 chrII 730059 . T C 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=138;Dels=0.00;FS=3.034;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.436;QD=22.49;ReadPosRankSum=2.361;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3137,327,0 chrII 730082 . T C 2346 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.22;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2379,255,0 chrII 730165 . T C 3134 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.69;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3167,333,0 chrII 730195 . T C 3012 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3045,327,0 chrII 730234 . T C 2839 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.90;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2872,303,0 chrII 730297 . G A 3388.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.7195;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.55;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3388,346,0 chrII 730392 . C G 3395.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1490;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.34;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3395,381,0 chrII 730763 . T C 2531 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2564,270,0 chrII 730861 . A G 2519 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.24;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2552,270,0 chrII 730949 . T C 2965 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.35;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2998,330,0 chrII 731155 . G A 2781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.402;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.027;QD=21.90;ReadPosRankSum=0.715;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2814,285,0 chrII 731212 . G A 3722.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.86;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3722,382,0 chrII 731292 . T C 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=137;Dels=0.00;FS=6.053;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.726;QD=23.07;ReadPosRankSum=2.413;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3194,351,0 chrII 731394 . A T 3769.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=25.13;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3769,394,0 chrII 731473 . A G 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=172;Dels=0.00;FS=12.603;HaplotypeScore=4.3527;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.234;QD=19.33;ReadPosRankSum=2.959;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:3325,372,0 chrII 731475 . A T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.40;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3406,352,0 chrII 731541 . C T 3486.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.87;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3486,361,0 chrII 731564 . A G 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=1.203;QD=22.46;ReadPosRankSum=1.636;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3279,366,0 chrII 731596 . A G 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-1.254;QD=23.14;ReadPosRankSum=1.684;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3356,357,0 chrII 731934 . C T 2361 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.38;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2394,255,0 chrII 731970 . A T 2926 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.01;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2959,309,0 chrII 732028 . G T 2933 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.28;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2966,315,0 chrII 732123 . C T 4320.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.67;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4320,445,0 chrII 732408 . G T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=25.97;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3791,388,0 chrII 732496 . T C 2360 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.60;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2393,258,0 chrII 732591 . A G 2724 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.28;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2757,309,0 chrII 732631 . T C 2411 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=22.32;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2444,270,0 chrII 732633 . C G 2453 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=23.59;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2486,261,0 chrII 732678 . T C 1747 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.1137;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.80;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1780,195,0 chrII 733014 . C T 2902 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.98;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2935,306,0 chrII 733320 . C T 3395.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.6340;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.49;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3395,363,0 chrII 733332 . A G 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.895;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=1.094;QD=22.54;ReadPosRankSum=1.709;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3449,363,0 chrII 733473 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.74;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3336,340,0 chrII 733476 . C T 3305.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.91;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3305,340,0 chrII 733543 . C T 3050 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.55;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3083,318,0 chrII 733629 . G A 3000 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.62;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3033,315,0 chrII 733707 . T C 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.586;QD=23.45;ReadPosRankSum=1.679;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3105,333,0 chrII 733809 . C T 3079 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3112,333,0 chrII 733887 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.61;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3032,315,0 chrII 733953 . G A 3631.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.58;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3631,387,0 chrII 734046 . C T 3841.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.61;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3841,397,0 chrII 734409 . A G 3675.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.70;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3675,387,0 chrII 734775 . G A 5900.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=15.0660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5900,639,0 chrII 735096 . C T 8368.01 PASS AC=2;AF=1.00;AN=2;DP=359;Dels=0.00;FS=0.000;HaplotypeScore=32.2727;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.31;SB=-3.244e+03 GT:AD:DP:GQ:PL 1/1:0,355:359:99:8368,892,0 chrII 735180 . T A 6141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=347;Dels=0.00;FS=3.880;HaplotypeScore=25.3691;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-0.424;QD=17.70;ReadPosRankSum=1.702;SB=-3.711e+03 GT:AD:DP:GQ:PL 1/1:1,346:347:99:6141,655,0 chrII 735186 . A G 5946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.329;DP=342;Dels=0.00;FS=13.488;HaplotypeScore=19.0161;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;MQRankSum=-2.005;QD=17.39;ReadPosRankSum=4.496;SB=-3.502e+03 GT:AD:DP:GQ:PL 1/1:7,334:342:99:5946,648,0 chrII 735207 . C T 6516.01 PASS AC=2;AF=1.00;AN=2;DP=350;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=18.62;SB=-4.347e+03 GT:AD:DP:GQ:PL 1/1:0,350:350:99:6516,673,0 chrII 735240 . A T 8298.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=428;Dels=0.00;FS=7.326;HaplotypeScore=35.8745;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.899;QD=19.39;ReadPosRankSum=2.409;SB=-4.960e+03 GT:AD:DP:GQ:PL 1/1:2,426:428:99:8298,877,0 chrII 735374 . G A 7994.01 PASS AC=2;AF=1.00;AN=2;DP=351;Dels=0.00;FS=0.000;HaplotypeScore=17.4902;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=22.77;SB=-4.357e+03 GT:AD:DP:GQ:PL 1/1:0,351:351:99:7994,823,0 chrII 735399 . C T 6888.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=21.87;SB=-4.224e+03 GT:AD:DP:GQ:PL 1/1:0,315:315:99:6888,724,0 chrII 735582 . T C 4905.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.9872;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.60;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4905,520,0 chrII 736085 . G T 3548.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=20.99;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3548,370,0 chrII 736089 . C T 3463.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=21.12;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3463,360,0 chrII 736599 . A C 5136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=229;Dels=0.00;FS=3.029;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.028;QD=22.43;ReadPosRankSum=2.374;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:2,226:229:99:5136,550,0 chrII 736946 . G A 5022.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=17.5092;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:5022,520,0 chrII 737232 . A G 5251.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.12;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5251,562,0 chrII 737329 . T C 4828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.736;DP=205;Dels=0.00;FS=7.941;HaplotypeScore=24.3933;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.614;QD=23.55;ReadPosRankSum=3.667;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:5,200:205:99:4828,516,0 chrII 737397 . T C 4625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=210;Dels=0.00;FS=3.928;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.726;QD=22.02;ReadPosRankSum=1.617;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4625,484,0 chrII 737979 . G C 4018.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.4476;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.45;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,174:179:99:4018,429,0 chrII 738015 . T G 4776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.7468;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.009;QD=24.00;ReadPosRankSum=1.715;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4776,505,0 chrII 738213 . A C 4596.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=7.3151;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=18.17;SB=-3.334e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:4596,495,0 chrII 738241 . G A 4284.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.40;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4284,456,0 chrII 738886 . C T 4741.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=23.47;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4741,490,0 chrII 738941 . T C 5556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=270;Dels=0.00;FS=10.409;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-1.294;QD=20.58;ReadPosRankSum=2.922;SB=-3.305e+03 GT:AD:DP:GQ:PL 1/1:3,267:270:99:5556,606,0 chrII 738947 . T C 5656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=276;Dels=0.00;FS=3.478;HaplotypeScore=3.4387;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=0.341;QD=20.49;ReadPosRankSum=1.656;SB=-3.359e+03 GT:AD:DP:GQ:PL 1/1:1,274:276:99:5656,607,0 chrII 738959 . T C 5433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=274;Dels=0.00;FS=3.463;HaplotypeScore=5.8333;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-1.250;QD=19.83;ReadPosRankSum=1.719;SB=-3.289e+03 GT:AD:DP:GQ:PL 1/1:1,272:274:99:5433,597,0 chrII 739037 . C T 5262.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.47;SB=-2.882e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5262,541,0 chrII 739280 . C T 6323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=253;Dels=0.00;FS=3.697;HaplotypeScore=18.4759;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=0.418;QD=24.99;ReadPosRankSum=1.718;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:6323,635,0 chrII 739334 . C T 5885.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=5.9682;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.35;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5885,622,0 chrII 739341 . G T 5501.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=9.4847;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.16;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5501,606,0 chrII 739451 . A G 5085.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.30;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5085,544,0 chrII 739563 . T C 4261.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=211;Dels=0.00;FS=6.212;HaplotypeScore=13.1527;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.240;QD=20.19;ReadPosRankSum=1.699;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,208:211:99:4261,448,0 chrII 739698 . T C 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=150;Dels=0.00;FS=3.040;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.440;QD=22.63;ReadPosRankSum=2.333;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:2,146:150:99:3395,357,0 chrII 739770 . T C 4185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.684;DP=166;Dels=0.00;FS=7.685;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.632;QD=25.21;ReadPosRankSum=3.798;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:5,160:166:99:4185,442,0 chrII 739813 . A G 4551.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:4551,510,0 chrII 739892 . T G 4222.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=25.90;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4222,451,0 chrII 740026 . T C 5515.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=14.5824;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.17;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5515,592,0 chrII 740164 . G A 4340.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=22.96;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4340,445,0 chrII 740168 . A G 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=194;Dels=0.00;FS=4.025;HaplotypeScore=6.7287;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=-0.631;QD=21.13;ReadPosRankSum=1.660;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4099,435,0 chrII 740350 . T C 5380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=222;Dels=0.00;FS=3.358;HaplotypeScore=7.8345;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-1.215;QD=24.23;ReadPosRankSum=1.716;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:5380,568,0 chrII 740362 . A G 5293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=223;Dels=0.00;FS=6.035;HaplotypeScore=10.7316;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-0.650;QD=23.74;ReadPosRankSum=2.896;SB=-2.985e+03 GT:AD:DP:GQ:PL 1/1:3,218:223:99:5293,547,0 chrII 740593 . G A 5369.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.6693;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.08;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5369,577,0 chrII 740639 . A G 6138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=243;Dels=0.00;FS=8.094;HaplotypeScore=13.3584;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.359;QD=25.26;ReadPosRankSum=2.419;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:2,241:243:99:6138,658,0 chrII 741097 . C T 3471.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3471,369,0 chrII 741211 . G A 3990.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.94;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3990,420,0 chrII 741254 . A C 4497.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.31;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4497,495,0 chrII 741344 . A G 4923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=208;Dels=0.00;FS=4.814;HaplotypeScore=12.7200;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=0.605;QD=23.67;ReadPosRankSum=1.698;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:4923,534,0 chrII 741902 . G A 1840 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.00;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1873,195,0 chrII 741999 . A G 1900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.185;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=12.8733;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.649;QD=20.43;ReadPosRankSum=1.417;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1933,210,0 chrII 742288 . C T 2405 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.69;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2438,261,0 chrII 742394 . C T 4380.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.33;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4380,457,0 chrII 742472 . A G 3497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.307;QD=22.56;ReadPosRankSum=1.620;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3497,381,0 chrII 742660 . G A 3053 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.48;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3086,318,0 chrII 742721 . C G 2294 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=20.85;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2327,249,0 chrII 742748 . A G 2389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=109;Dels=0.00;FS=4.021;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.033;QD=21.92;ReadPosRankSum=1.667;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,105:109:99:2422,258,0 chrII 743586 . G T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=25.09;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3513,364,0 chrII 743655 . T C 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=6.054;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-2.128;QD=21.40;ReadPosRankSum=2.412;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:2,128:132:99:2858,315,0 chrII 743673 . T C 3136 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.63;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3169,348,0 chrII 743756 . G A 3522.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.4018;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3522,372,0 chrII 743899 . T C 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-1.243;QD=24.32;ReadPosRankSum=1.711;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3989,429,0 chrII 744063 . G A 4554.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6875;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.35;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4554,472,0 chrII 744356 . A C 4181.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4181,462,0 chrII 744519 . A G 3091 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3124,330,0 chrII 745040 . G A 4349.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.1372;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.64;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4349,448,0 chrII 745190 . G A 3328.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.42;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3328,351,0 chrII 745192 . C G 3372.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.94;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3372,357,0 chrII 745238 . A G 3471.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.69;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3471,369,0 chrII 745280 . C A 4090.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.35;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4090,424,0 chrII 745349 . G C 4379.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.93;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4379,489,0 chrII 745499 . T C 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.710;QD=24.86;ReadPosRankSum=1.687;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3853,405,0 chrII 745793 . G A 2704 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.81;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2737,279,0 chrII 745802 . T C 2248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=113;Dels=0.00;FS=6.087;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-2.581;QD=19.89;ReadPosRankSum=2.938;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2281,243,0 chrII 745889 . T G 2205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=2.894;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=0.942;QD=19.86;ReadPosRankSum=2.405;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2238,243,0 chrII 745895 . T C 2189 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.71;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2222,234,0 chrII 747838 . A G 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.700;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.773;QD=21.10;ReadPosRankSum=2.882;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2396,255,0 chrII 747903 . T A 2319 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2352,240,0 chrII 748066 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.643;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.7451;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.073;QD=22.94;ReadPosRankSum=2.284;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:4,142:146:99:3349,357,0 chrII 748404 . T C 5354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=271;Dels=0.00;FS=15.818;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.605;QD=19.76;ReadPosRankSum=2.921;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:3,264:271:99:5354,597,0 chrII 748514 . A C 4206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=184;Dels=0.00;FS=6.236;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.607;QD=22.86;ReadPosRankSum=2.423;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4206,453,0 chrII 748630 . C G 3713.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.6497;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.50;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3713,391,0 chrII 749203 . A G 4617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.354;QD=23.92;ReadPosRankSum=1.696;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:4617,490,0 chrII 750883 . G A 2232 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2265,237,0 chrII 752501 . G C 5451.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5451,600,0 chrII 754355 . G A 2676 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.68;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2709,282,0 chrII 754404 . A G 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=3.399;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.313;QD=21.81;ReadPosRankSum=1.666;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2323,246,0 chrII 754416 . A G 1844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=94;Dels=0.00;FS=11.184;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-0.511;QD=19.62;ReadPosRankSum=2.903;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:3,90:94:99:1877,198,0 chrII 754436 . T C 1830 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3459;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.89;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1863,198,0 chrII 754776 . G A 4330.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.60;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4330,468,0 chrII 754911 . A G 3630.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3630,399,0 chrII 755095 . G C 3559.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.41;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3559,378,0 chrII 755556 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=25.21;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3302,354,0 chrII 755802 . G A 1782 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.00;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1815,192,0 chrII 755817 . T C 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=91;Dels=0.00;FS=3.212;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-0.866;QD=20.59;ReadPosRankSum=1.614;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,87:91:99:1907,198,0 chrII 755898 . A G 2592 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.45;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2625,276,0 chrII 756287 . T G 3051 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.3005;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.47;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3084,330,0 chrII 757746 . T C 4218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=180;Dels=0.00;FS=2.843;HaplotypeScore=15.0584;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.266;QD=23.43;ReadPosRankSum=2.395;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4218,459,0 chrII 757908 . G A 4343.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.2363;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.72;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4343,460,0 chrII 758568 . A G 3853.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.0244;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.02;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3853,408,0 chrII 758608 . T C 4560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.229;QD=25.33;ReadPosRankSum=1.693;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4560,478,0 chrII 758926 . T A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.30;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4077,421,0 chrII 758975 . T G 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=139;Dels=0.00;FS=7.753;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-0.461;QD=22.02;ReadPosRankSum=2.341;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:2,134:139:99:3094,327,0 chrII 759134 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=9.0562;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.37;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3273,337,0 chrII 759221 . G T 3750.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3750,394,0 chrII 759357 . G A 5176.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.0547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.37;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5176,553,0 chrII 759661 . G T 4991.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.13;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4991,514,0 chrII 759726 . T C 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=182;Dels=0.00;FS=3.259;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.501;QD=22.27;ReadPosRankSum=1.713;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:4054,441,0 chrII 760248 . C T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=22.60;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3571,367,0 chrII 760255 . A T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.54;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3575,373,0 chrII 760302 . C T 3707.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.33;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3707,382,0 chrII 760365 . C T 3922.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4186;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.98;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3922,411,0 chrII 760599 . G A 5041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=213;Dels=0.00;FS=3.095;HaplotypeScore=17.9425;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.083;QD=23.67;ReadPosRankSum=1.182;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:5041,517,0 chrII 760767 . A G 5358.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.0610;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=24.14;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5358,568,0 chrII 760880 . C T 3885.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.8287;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=23.13;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3885,400,0 chrII 760904 . G A 3685.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=23.32;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3685,390,0 chrII 760960 . C T 3733.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=22.76;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3733,408,0 chrII 761033 . A T 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.589;DP=126;Dels=0.00;FS=20.241;HaplotypeScore=19.3302;MLEAC=2;MLEAF=1.00;MQ=32.89;MQ0=0;MQRankSum=-1.076;QD=15.67;ReadPosRankSum=5.597;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:12,114:126:99:2008,207,0 chrII 761038 . G T 1802 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=0;QD=15.53;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1835,189,0 chrII 761049 . C T 1851 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=0;QD=17.46;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1884,192,0 chrII 761056 . G A 1715 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.03;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1748,183,0 chrII 761061 . G A 1694 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.45;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1727,177,0 chrII 761079 . T A 196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.982;DP=88;Dels=0.00;FS=2.181;HaplotypeScore=84.7248;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;MQRankSum=-2.099;QD=2.23;ReadPosRankSum=5.618;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:19,69:88:30:229,30,0 chrII 761108 . T C 1340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.860;DP=96;Dels=0.00;FS=3.056;HaplotypeScore=85.0562;MLEAC=2;MLEAF=1.00;MQ=36.46;MQ0=0;MQRankSum=1.039;QD=13.96;ReadPosRankSum=0.603;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1373,127,0 chrII 761118 . T C 1375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=86.8977;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=0;MQRankSum=-1.108;QD=12.39;ReadPosRankSum=1.607;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1408,153,0 chrII 761121 . C T 1480 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=86.0227;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;QD=12.98;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1513,162,0 chrII 761188 . G A 2609 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=21.74;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2642,276,0 chrII 761436 . A G 3738.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.25;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3738,391,0 chrII 761454 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.409;DP=173;Dels=0.00;FS=9.141;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-1.237;QD=21.90;ReadPosRankSum=3.369;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:4,169:173:99:3789,426,0 chrII 761529 . G A 4088.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.63;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4088,435,0 chrII 761787 . G A 4939.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.0091;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.76;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4939,505,0 chrII 761814 . C T 4871.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=21.46;SB=-3.200e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:4871,502,0 chrII 761832 . T C 4244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;MQRankSum=-1.717;QD=17.91;ReadPosRankSum=1.673;SB=-3.254e+03 GT:AD:DP:GQ:PL 1/1:1,235:237:99:4244,445,0 chrII 761853 . T C 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.784;DP=231;Dels=0.00;FS=12.150;HaplotypeScore=6.7039;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;MQRankSum=-0.932;QD=16.68;ReadPosRankSum=3.777;SB=-3.009e+03 GT:AD:DP:GQ:PL 1/1:5,224:231:99:3854,417,0 chrII 761880 . A G 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=222;Dels=0.00;FS=6.361;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;MQRankSum=-0.393;QD=15.78;ReadPosRankSum=2.427;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:3503,387,0 chrII 761901 . A G 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=204;Dels=0.00;FS=3.680;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;MQRankSum=-0.196;QD=15.77;ReadPosRankSum=1.715;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:3250,348,0 chrII 761904 . T C 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;MQRankSum=-0.857;QD=15.54;ReadPosRankSum=1.715;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:3173,336,0 chrII 761943 . A G 4286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=212;Dels=0.00;FS=6.726;HaplotypeScore=7.9145;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.527;QD=20.22;ReadPosRankSum=2.380;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4286,451,0 chrII 761970 . A G 4833.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.01;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4833,522,0 chrII 762336 . T C 5035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=229;Dels=0.00;FS=8.045;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.402;QD=21.99;ReadPosRankSum=2.428;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:5035,552,0 chrII 762610 . A T 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.362;QD=24.37;ReadPosRankSum=1.694;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2275,237,0 chrII 762665 . A G 1046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.530;DP=54;Dels=0.00;FS=2.439;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.322;QD=19.37;ReadPosRankSum=2.870;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:3,51:54:99:1079,117,0 chrII 763111 . T A 4239.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.31;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4239,459,0 chrII 763117 . C T 4290.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.24;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4290,456,0 chrII 763258 . A G 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.038;QD=24.20;ReadPosRankSum=1.713;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4405,471,0 chrII 763288 . T C 4037.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.70;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4037,441,0 chrII 763300 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=199;Dels=0.00;FS=5.967;HaplotypeScore=8.5858;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-0.500;QD=18.88;ReadPosRankSum=2.965;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:3758,414,0 chrII 764110 . G A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5830;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.62;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3496,358,0 chrII 764239 . T C 2932 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=16.0412;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.84;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2965,312,0 chrII 764397 . C A 2678 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.84;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2711,282,0 chrII 764475 . C A 3472.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=26.30;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3472,358,0 chrII 764652 . A G 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.805;QD=21.77;ReadPosRankSum=1.650;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2841,297,0 chrII 764667 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.38;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2745,282,0 chrII 764939 . A T 3200 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.24;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3233,345,0 chrII 765576 . A G 3182 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.75;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3215,342,0 chrII 765669 . G A 2962 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.68;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2995,312,0 chrII 765957 . T C 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.389;DP=175;Dels=0.00;FS=8.771;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.863;QD=22.51;ReadPosRankSum=3.389;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:4,170:175:99:3939,409,0 chrII 765978 . G A 4292.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.59;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4292,448,0 chrII 766339 . A G 3507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=151;Dels=0.00;FS=3.011;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.434;QD=23.23;ReadPosRankSum=2.417;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3507,375,0 chrII 766395 . C T 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=134;Dels=0.00;FS=3.724;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.050;QD=21.61;ReadPosRankSum=1.155;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2929,324,0 chrII 766486 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.26;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3260,334,0 chrII 766644 . T C 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.014;QD=23.77;ReadPosRankSum=1.670;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2672,297,0 chrII 767049 . A G 1946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=96;Dels=0.00;FS=3.026;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-0.321;QD=20.27;ReadPosRankSum=2.398;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1979,216,0 chrII 767058 . T C 1963 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.11;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1996,213,0 chrII 767330 . A G 2569 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.35;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2602,279,0 chrII 767375 . C T 3816.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.94;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3816,394,0 chrII 767442 . T C 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=169;Dels=0.00;FS=2.966;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.558;QD=21.08;ReadPosRankSum=2.360;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:2,164:169:99:3562,381,0 chrII 767447 . G T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.70;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3477,364,0 chrII 767690 . A T 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.1454;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-1.221;QD=22.07;ReadPosRankSum=1.688;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3443,355,0 chrII 767991 . A G 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=9.6093;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-1.373;QD=22.47;ReadPosRankSum=1.681;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3112,336,0 chrII 767997 . T A 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=143;Dels=0.01;FS=3.041;HaplotypeScore=11.9764;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-0.184;QD=21.50;ReadPosRankSum=2.309;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3107,333,0 chrII 768214 . G A 2849 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.98;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2882,309,0 chrII 768457 . A G 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.796;QD=24.44;ReadPosRankSum=1.662;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3642,390,0 chrII 769123 . T A 4674.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.0435;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.13;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4674,478,0 chrII 769256 . G A 5060.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=17.4462;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5060,526,0 chrII 769300 . G A 5317.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-2.980e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5317,544,0 chrII 769903 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.62;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3393,352,0 chrII 770977 . A G 5769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=249;Dels=0.00;FS=9.630;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.171;QD=23.17;ReadPosRankSum=2.914;SB=-3.131e+03 GT:AD:DP:GQ:PL 1/1:3,243:249:99:5769,636,0 chrII 771055 . C G 4769.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.85;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4769,511,0 chrII 771102 . A C 4246.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=19.9199;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.46;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4246,451,0 chrII 772129 . T C 2583 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.08;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2616,279,0 chrII 773017 . A G 3601.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.56;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3601,390,0 chrII 773042 . G A 3099 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.14;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3132,319,0 chrII 773068 . C T 2796 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.92;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2829,288,0 chrII 773188 . G C 2363 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=18.61;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2396,249,0 chrII 773200 . G A 2300 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.70;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2333,252,0 chrII 773821 . T A 378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.288;DP=39;Dels=0.00;FS=5.911;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=0.311;QD=9.69;ReadPosRankSum=1.644;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:42:411,42,0 chrII 774954 . T C 4297.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.1673;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.28;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4297,474,0 chrII 775070 . T C 5414.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.9519;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.37;SB=-2.926e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5414,577,0 chrII 775233 . G A 6271.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=16.3840;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.31;SB=-2.993e+03 GT:AD:DP:GQ:PL 1/1:0,256:258:99:6271,649,0 chrII 775344 . T C 5111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=232;Dels=0.00;FS=3.243;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.828;QD=22.03;ReadPosRankSum=1.687;SB=-2.937e+03 GT:AD:DP:GQ:PL 1/1:2,229:232:99:5111,558,0 chrII 775560 . T C 5099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.655;DP=251;Dels=0.00;FS=7.823;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-1.899;QD=20.31;ReadPosRankSum=3.717;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:5,245:251:99:5099,555,0 chrII 775563 . A G 5004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=249;Dels=0.00;FS=4.500;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.237;QD=20.10;ReadPosRankSum=1.704;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:1,247:249:99:5004,541,0 chrII 775579 . C A 5329.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=20.66;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5329,556,0 chrII 776061 . T C 4079.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.5767;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.92;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4079,441,0 chrII 776350 . C T 2447 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.53;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2480,255,0 chrII 776501 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=25.26;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2407,258,0 chrII 776545 . C T 2341 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.73;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2374,255,0 chrII 776559 . C G 2283 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.54;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2316,243,0 chrII 776708 . T C 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.300;QD=23.40;ReadPosRankSum=1.706;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,132:136:99:3215,336,0 chrII 776951 . A G 5648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=227;Dels=0.00;FS=4.601;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-1.363;QD=24.88;ReadPosRankSum=1.717;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:1,224:227:99:5648,607,0 chrII 777071 . G A 4574.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.7933;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.20;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4574,492,0 chrII 777185 . G A 5612.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=12.9797;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.54;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:5612,586,0 chrII 777200 . G A 4947.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=22.38;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4947,511,0 chrII 777255 . T C 4288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=21.4244;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.168;QD=20.23;ReadPosRankSum=1.715;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:1,205:212:99:4288,453,0 chrII 777303 . A G 4776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=212;Dels=0.00;FS=10.726;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.454;QD=22.53;ReadPosRankSum=2.946;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:3,203:212:99:4776,531,0 chrII 777341 . G A 5286.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.0111;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.29;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:5286,547,0 chrII 777474 . C T 4019.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.20;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4019,412,0 chrII 777491 . C T 4314.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.95;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4314,448,0 chrII 777544 . G A 4283.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.74;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:4283,442,0 chrII 777883 . C T 2392 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=18.98;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2425,255,0 chrII 778088 . G C 2633 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=25.08;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2666,282,0 chrII 778150 . A C 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.335;QD=22.83;ReadPosRankSum=1.880;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2795,288,0 chrII 778183 . T A 2574 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.40;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2607,276,0 chrII 778285 . A G 2872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=125;Dels=0.00;FS=5.763;HaplotypeScore=3.0922;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-0.476;QD=22.98;ReadPosRankSum=2.766;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2905,306,0 chrII 778507 . A G 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=8.300;HaplotypeScore=9.7244;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=0.407;QD=23.17;ReadPosRankSum=2.410;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2906,309,0 chrII 778544 . C T 2487 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.55;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2520,252,0 chrII 778555 . G C 2038 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=18.87;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2071,222,0 chrII 778895 . T C 3923.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.4546;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.15;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3923,414,0 chrII 779386 . G C 4235.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4235,468,0 chrII 779530 . T C 3185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.729;DP=146;Dels=0.00;FS=11.626;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.229;QD=21.82;ReadPosRankSum=2.827;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:3,142:146:99:3218,345,0 chrII 779836 . G T 3156 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.5304;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;QD=14.03;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:3189,330,0 chrII 780014 . C A 7377.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=24.5902;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.63;SB=-4.250e+03 GT:AD:DP:GQ:PL 1/1:0,326:326:99:7377,769,0 chrII 780187 . A G 12827.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=543;Dels=0.00;FS=9.289;HaplotypeScore=48.4751;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;MQRankSum=-0.759;QD=23.62;ReadPosRankSum=2.386;SB=-4.936e+03 GT:AD:DP:GQ:PL 1/1:2,539:543:99:12827,1352,0 chrII 780227 . G T 13586.01 filter AC=2;AF=1.00;AN=2;DP=544;Dels=0.00;FS=0.000;HaplotypeScore=35.5716;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=24.97;SB=-4.998e+03 GT:AD:DP:GQ:PL 1/1:0,540:544:99:13586,1427,0 chrII 780308 . T A 10583.01 filter AC=2;AF=1.00;AN=2;DP=446;Dels=0.01;FS=0.000;HaplotypeScore=24.8181;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=2;QD=23.73;SB=-5.802e+03 GT:AD:DP:GQ:PL 1/1:0,442:442:99:10583,1094,0 chrII 780383 . G A 2268 filter AC=2;AF=1.00;AN=2;BaseQRankSum=11.070;DP=543;Dels=0.01;FS=0.838;HaplotypeScore=679.4571;MLEAC=2;MLEAF=1.00;MQ=35.50;MQ0=5;MQRankSum=0.685;QD=4.18;ReadPosRankSum=4.219;SB=-3.539e+03 GT:AD:DP:GQ:PL 1/1:110,429:540:99:2301,178,0 chrII 780407 . A G 119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.553;DP=530;Dels=0.00;FS=4.273;HaplotypeScore=645.0284;MLEAC=1;MLEAF=0.500;MQ=33.20;MQ0=1;MQRankSum=-1.232;QD=0.22;ReadPosRankSum=-0.376;SB=-1.043e+03 GT:AD:DP:GQ:PL 0/1:363,165:530:99:149,0,1631 chrII 780410 . G A 133.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.205;DP=521;Dels=0.01;FS=4.347;HaplotypeScore=604.8219;MLEAC=1;MLEAF=0.500;MQ=33.26;MQ0=0;MQRankSum=-4.294;QD=0.26;ReadPosRankSum=-2.676;SB=-1.117e+03 GT:AD:DP:GQ:PL 0/1:361,156:517:99:163,0,1573 chrII 780993 . T C 4287.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.8322;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.07;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4287,459,0 chrII 781117 . A G 3868.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3868,406,0 chrII 781232 . G A 4403.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.1068;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.46;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4403,451,0 chrII 781709 . T C 4252.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=172;Dels=0.00;FS=2.998;HaplotypeScore=6.7550;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.264;QD=24.72;ReadPosRankSum=2.378;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:4252,459,0 chrII 781730 . G A 4133.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=25.05;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4133,441,0 chrII 781785 . G A 4271.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=25.57;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4271,439,0 chrII 781871 . T A 4325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=3.496;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.550;QD=25.44;ReadPosRankSum=1.671;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4325,445,0 chrII 781964 . A G 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=169;Dels=0.00;FS=3.021;HaplotypeScore=7.3124;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=-0.289;QD=15.68;ReadPosRankSum=2.361;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:2,164:169:99:2683,282,0 chrII 781967 . T C 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=170;Dels=0.00;FS=6.360;HaplotypeScore=5.1410;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-0.643;QD=15.53;ReadPosRankSum=2.377;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:2673,285,0 chrII 782012 . T A 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=182;Dels=0.00;FS=2.992;HaplotypeScore=10.9348;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.074;QD=19.48;ReadPosRankSum=2.396;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3545,364,0 chrII 782052 . A G 4247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=194;Dels=0.00;FS=11.475;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-0.674;QD=21.89;ReadPosRankSum=2.933;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:4247,456,0 chrII 782067 . T C 3878.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=20.63;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:3878,406,0 chrII 782081 . C T 3952.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=21.0007;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=18.05;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:3952,414,0 chrII 782175 . C T 5095.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=25.35;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:5095,526,0 chrII 782243 . A G 4029.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.8069;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.66;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4029,438,0 chrII 782369 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=20.79;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3110,351,0 chrII 782372 . A T 3286.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=21.91;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3286,340,0 chrII 782557 . T G 4652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.1393;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=-0.169;QD=21.74;ReadPosRankSum=2.967;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:3,211:214:99:4652,493,0 chrII 782574 . C T 4228.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=18.15;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4228,442,0 chrII 782581 . A T 4333.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=18.68;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:4333,448,0 chrII 782686 . T C 4336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.2380;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.468;QD=23.57;ReadPosRankSum=1.694;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4336,460,0 chrII 783142 . C A 3927.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3927,417,0 chrII 783292 . C T 3000 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=5.9046;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.00;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3033,321,0 chrII 783589 . A G 3961.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.30;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3961,421,0 chrII 783691 . G A 2949 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=14.4277;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.22;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2982,312,0 chrII 783778 . C A 4119.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=16.6042;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.88;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4119,418,0 chrII 784270 . A C 3094 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.36;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3127,327,0 chrII 784284 . T A 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=155;Dels=0.00;FS=8.144;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-1.609;QD=21.23;ReadPosRankSum=2.386;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3291,342,0 chrII 784336 . T A 3765.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.89;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3765,399,0 chrII 784471 . C T 3783.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=24.89;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3783,388,0 chrII 784573 . C T 2965 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.35;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2998,315,0 chrII 784600 . C T 2749 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.6366;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=24.11;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2782,285,0 chrII 784794 . T G 1386 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=9.3017;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.38;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1419,150,0 chrII 784811 . A G 1155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=61;Dels=0.00;FS=8.301;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=0.188;QD=18.93;ReadPosRankSum=2.367;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:99:1188,126,0 chrII 784884 . C T 1811 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=20.35;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1844,189,0 chrII 784895 . G C 1748 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=18.02;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1781,192,0 chrII 784913 . C T 2294 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=20.67;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2327,240,0 chrII 785017 . T G 2521 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=23.56;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2554,276,0 chrII 785054 . T C 2706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=0.107;QD=20.66;ReadPosRankSum=1.705;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2739,294,0 chrII 785060 . G A 2836 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=21.32;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2869,300,0 chrII 785066 . A C 2734 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=20.56;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2767,300,0 chrII 785146 . T C 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.216;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-0.666;QD=23.25;ReadPosRankSum=1.705;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3056,321,0 chrII 785196 . C T 3220.05 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=23.68;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3253,336,0 chrII 785238 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=24.04;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3654,378,0 chrII 785248 . G A 3551.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=22.47;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3551,366,0 chrII 785445 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=21.7633;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.04;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2999,321,0 chrII 785586 . C T 3181 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.66;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3214,331,0 chrII 785614 . T A 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=9.8696;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-0.053;QD=22.95;ReadPosRankSum=1.705;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3039,315,0 chrII 785730 . T A 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=128;Dels=0.00;FS=3.257;HaplotypeScore=11.3649;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=0.559;QD=23.55;ReadPosRankSum=1.596;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3048,315,0 chrII 785852 . G A 2814 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=22.6633;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.27;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,141:145:99:2847,297,0 chrII 785908 . G T 3314.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=15.8169;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.52;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3314,351,0 chrII 786053 . T C 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=141;Dels=0.00;FS=4.137;HaplotypeScore=13.9592;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=1.509;QD=21.97;ReadPosRankSum=1.633;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3131,345,0 chrII 786173 . C T 2444 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.63;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2477,255,0 chrII 786204 . C T 3175 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.5146;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.80;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3208,328,0 chrII 786307 . A G 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=4.555;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-1.454;QD=21.24;ReadPosRankSum=1.707;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2943,312,0 chrII 786309 . C T 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=0.690;QD=20.34;ReadPosRankSum=-0.169;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,132:136:99:2799,291,0 chrII 786326 . A T 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=4.893;HaplotypeScore=6.6880;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-0.538;QD=19.89;ReadPosRankSum=1.684;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2917,306,0 chrII 786397 . A G 3634.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=23.29;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3634,379,0 chrII 786409 . A G 3542.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.73;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,159:163:99:3542,384,0 chrII 786546 . T C 3818.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.73;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3818,423,0 chrII 786589 . T G 3699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=152;Dels=0.00;FS=5.097;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.251;QD=24.34;ReadPosRankSum=1.687;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3699,388,0 chrII 786677 . T C 3809.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.42;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3809,414,0 chrII 786698 . A G 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=152;Dels=0.00;FS=3.245;HaplotypeScore=10.6765;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.228;QD=23.14;ReadPosRankSum=1.687;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3517,375,0 chrII 786816 . T A 3202 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.82;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3235,336,0 chrII 786833 . A G 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=131;Dels=0.00;FS=3.031;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.328;QD=23.08;ReadPosRankSum=2.393;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3057,321,0 chrII 786902 . G T 3107 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.8160;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.54;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3140,333,0 chrII 787344 . A T 2911 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.39;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2944,315,0 chrII 787482 . C G 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=0.731;QD=19.34;ReadPosRankSum=1.681;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2644,297,0 chrII 787484 . G C 2706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=0.552;QD=19.75;ReadPosRankSum=1.552;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2739,297,0 chrII 787500 . C T 2642 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.43;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2675,282,0 chrII 787620 . A G 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=4.319;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=0.130;QD=21.39;ReadPosRankSum=1.692;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3701,390,0 chrII 787633 . A G 3636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.256;DP=170;Dels=0.00;FS=4.150;HaplotypeScore=8.5289;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=0.195;QD=21.39;ReadPosRankSum=1.343;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3636,362,0 chrII 787939 . T C 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.619;DP=141;Dels=0.00;FS=11.846;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.252;QD=22.48;ReadPosRankSum=2.921;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:3202,333,0 chrII 788190 . T G 4032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=164;Dels=0.00;FS=6.373;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.532;QD=24.59;ReadPosRankSum=2.360;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:4032,427,0 chrII 788280 . A C 4004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=167;Dels=0.00;FS=6.933;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.303;QD=23.98;ReadPosRankSum=2.420;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:4004,429,0 chrII 788369 . C T 3370.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.17;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3370,357,0 chrII 788377 . C T 3316.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.96;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3316,342,0 chrII 788441 . C A 3789.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.39;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3789,388,0 chrII 788498 . C T 3670.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.80;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3670,373,0 chrII 788778 . G A 2495 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.0311;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.76;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2528,261,0 chrII 789162 . A G 2533 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.24;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2566,270,0 chrII 789798 . C T 3619.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.05;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3619,390,0 chrII 789930 . G C 3504.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.9782;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.84;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3504,381,0 chrII 789996 . T C 4395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=175;Dels=0.00;FS=5.480;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.167;QD=25.11;ReadPosRankSum=2.960;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:4395,466,0 chrII 790329 . A T 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.661;QD=23.68;ReadPosRankSum=1.661;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3504,372,0 chrII 790539 . T C 3140 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=13.4583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3173,336,0 chrII 790680 . T C 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=147;Dels=0.00;FS=3.040;HaplotypeScore=13.0176;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.059;QD=21.77;ReadPosRankSum=2.382;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3233,354,0 chrII 790744 . T C 4700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.326;QD=23.98;ReadPosRankSum=1.714;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4700,510,0 chrII 790803 . C T 4908.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.06;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4908,505,0 chrII 790890 . A G 5069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=213;Dels=0.00;FS=7.642;HaplotypeScore=13.7567;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.382;QD=23.80;ReadPosRankSum=2.403;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:2,207:213:99:5069,546,0 chrII 791214 . T C 4314.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.32;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4314,462,0 chrII 791232 . G A 4645.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.46;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4645,475,0 chrII 791314 . C T 4284.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.6911;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.91;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4284,439,0 chrII 791380 . A G 3488.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0150;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.73;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3488,369,0 chrII 791816 . G A 2766 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.44;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2799,297,0 chrII 791833 . C A 2969 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=23.02;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3002,312,0 chrII 791900 . T A 2468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=99;Dels=0.00;FS=6.154;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=0.012;QD=24.93;ReadPosRankSum=2.400;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2501,252,0 chrII 791901 . C A 2458 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=24.34;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2491,252,0 chrII 791936 . G C 1802 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=22.81;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1835,195,0 chrII 791949 . A G 1896 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=23.12;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1929,207,0 chrII 792022 . A G 2668 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=24.93;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2701,285,0 chrII 792199 . G A 2162 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.62;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2195,228,0 chrII 792210 . C A 2009 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.50;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2042,213,0 chrII 792247 . A G 1864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=93;Dels=0.00;FS=3.452;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=0.428;QD=20.04;ReadPosRankSum=1.695;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1897,201,0 chrII 792465 . C T 2044 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=24.63;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2077,216,0 chrII 792482 . C T 2202 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.47;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2235,240,0 chrII 792968 . A G 5140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=216;Dels=0.00;FS=10.083;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.074;QD=23.80;ReadPosRankSum=2.393;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:5140,541,0 chrII 793142 . T C 6746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=277;Dels=0.00;FS=6.047;HaplotypeScore=20.6996;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.547;QD=24.35;ReadPosRankSum=2.924;SB=-3.735e+03 GT:AD:DP:GQ:PL 1/1:3,274:277:99:6746,712,0 chrII 793241 . A C 5238.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=257;Dels=0.00;FS=4.915;HaplotypeScore=18.3443;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=-0.675;QD=20.38;ReadPosRankSum=3.271;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:4,253:257:99:5238,591,0 chrII 793247 . T A 5021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=-1.304;QD=20.66;ReadPosRankSum=1.575;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:5021,532,0 chrII 793276 . G A 5245.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=11.1099;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.57;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5245,544,0 chrII 793315 . T G 5386.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=23.22;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5386,574,0 chrII 793380 . A G 4333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=186;Dels=0.00;FS=2.890;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=0.614;QD=23.30;ReadPosRankSum=2.397;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4333,454,0 chrII 793382 . C A 4427.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=24.19;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4427,454,0 chrII 793476 . A C 3858.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=167;Dels=0.00;FS=3.654;HaplotypeScore=2.6515;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=1.276;QD=23.10;ReadPosRankSum=-1.400;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3858,405,0 chrII 793478 . C T 3786.01 SnpCluster AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.6515;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=22.81;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3786,402,0 chrII 793484 . A C 3588.01 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=21.23;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3588,375,0 chrII 793509 . A C 3154 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=19.59;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3187,357,0 chrII 793538 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=20.67;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3030,312,0 chrII 793624 . G C 3950.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.7184;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=25.00;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3950,420,0 chrII 793676 . G C 4119.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.3444;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=24.23;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,164:170:99:4119,433,0 chrII 793772 . A G 3084 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.70;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3117,324,0 chrII 793780 . G A 3071 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.8350;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.47;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3104,330,0 chrII 793881 . C T 3574.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1270;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.48;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3574,378,0 chrII 793976 . C T 4230.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.76;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4230,439,0 chrII 794038 . A G 3954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=164;Dels=0.00;FS=3.468;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=0.563;QD=24.11;ReadPosRankSum=1.710;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:3954,418,0 chrII 794075 . C T 4207.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.0958;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=26.13;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4207,439,0 chrII 794106 . T A 4235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=3.510;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.904;QD=23.02;ReadPosRankSum=1.676;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4235,439,0 chrII 794124 . T A 3921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=179;Dels=0.00;FS=7.038;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.132;QD=21.91;ReadPosRankSum=2.422;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3921,403,0 chrII 794237 . T C 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=184;Dels=0.00;FS=3.154;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.000;QD=22.06;ReadPosRankSum=1.694;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4059,450,0 chrII 794296 . G C 3907.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.6372;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.33;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3907,414,0 chrII 794317 . T C 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=167;Dels=0.00;FS=3.001;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.772;QD=21.74;ReadPosRankSum=2.405;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3631,387,0 chrII 794394 . A G 5254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=223;Dels=0.00;FS=3.660;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=0.691;QD=23.56;ReadPosRankSum=1.654;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:5254,568,0 chrII 794615 . C A 4128.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=19.38;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4128,430,0 chrII 794621 . C G 4121.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=19.44;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4121,438,0 chrII 794626 . C T 4076.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=19.69;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4076,424,0 chrII 794651 . T C 4152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=219;Dels=0.00;FS=3.960;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.182;QD=18.96;ReadPosRankSum=1.685;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4152,436,0 chrII 794794 . T C 3093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;MQRankSum=-1.314;QD=21.63;ReadPosRankSum=1.708;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3126,333,0 chrII 794800 . G A 3207 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=22.27;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3240,342,0 chrII 794828 . A G 2858 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5151;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=20.13;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2891,312,0 chrII 794921 . C T 3783.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.2437;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=23.07;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3783,385,0 chrII 794948 . G A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.3989;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=22.42;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3520,378,0 chrII 794976 . A G 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=157;Dels=0.00;FS=3.034;HaplotypeScore=6.6706;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;MQRankSum=-1.990;QD=18.55;ReadPosRankSum=2.418;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:2945,312,0 chrII 795012 . G A 3201 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=19.28;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3234,339,0 chrII 795018 . C T 2951 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=17.57;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:2984,309,0 chrII 795035 . A G 2488 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;QD=14.64;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2521,285,0 chrII 795043 . G C 2632 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=43.74;MQ0=0;QD=14.95;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:2665,288,0 chrII 795146 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=21.81;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3468,387,0 chrII 795161 . T C 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.6660;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=0.223;QD=20.71;ReadPosRankSum=1.711;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3397,360,0 chrII 795170 . G A 3625.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=20.60;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3625,393,0 chrII 795224 . T C 4995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=230;Dels=0.00;FS=3.026;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;MQRankSum=-1.766;QD=21.72;ReadPosRankSum=2.407;SB=-2.889e+03 GT:AD:DP:GQ:PL 1/1:2,228:230:99:4995,558,0 chrII 795319 . C T 7649.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=24.6505;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=24.05;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:1,316:318:99:7649,796,0 chrII 795354 . G C 6996.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=19.5963;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=24.38;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,280:287:99:6996,754,0 chrII 795419 . T G 5961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=283;Dels=0.00;FS=5.757;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-1.516;QD=21.06;ReadPosRankSum=2.947;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:3,279:283:99:5961,640,0 chrII 795422 . G A 6198.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=21.67;SB=-3.403e+03 GT:AD:DP:GQ:PL 1/1:0,282:286:99:6198,640,0 chrII 795433 . T C 6229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=307;Dels=0.00;FS=2.940;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.268;QD=20.29;ReadPosRankSum=2.418;SB=-3.427e+03 GT:AD:DP:GQ:PL 1/1:2,305:307:99:6229,678,0 chrII 795471 . A G 5622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=14.4752;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.508;QD=18.74;ReadPosRankSum=1.697;SB=-3.567e+03 GT:AD:DP:GQ:PL 1/1:1,299:300:99:5622,595,0 chrII 795527 . T C 5758.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=20.9264;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.65;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,262:266:99:5758,636,0 chrII 795692 . C A 4693.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=16.9496;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=23.12;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4693,496,0 chrII 795756 . C G 4481.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.84;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4481,472,0 chrII 795869 . A G 4981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=3.031;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.632;QD=23.83;ReadPosRankSum=1.715;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4981,537,0 chrII 795959 . A G 3796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=179;Dels=0.00;FS=2.563;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.608;QD=21.21;ReadPosRankSum=2.915;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:3,174:179:99:3796,408,0 chrII 796189 . G C 2831 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.1162;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2864,306,0 chrII 796250 . T C 3031 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.62;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3064,336,0 chrII 796295 . T C 3762.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=22.80;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3762,402,0 chrII 796341 . T A 3270.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=23.03;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3270,354,0 chrII 796474 . T C 1690 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=18.37;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1723,189,0 chrII 796540 . C T 373.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.331;DP=77;Dels=0.01;FS=2.377;HaplotypeScore=38.0067;MLEAC=1;MLEAF=0.500;MQ=42.15;MQ0=0;MQRankSum=1.681;QD=4.84;ReadPosRankSum=1.048;SB=-4.770e+02 GT:AD:DP:GQ:PL 0/1:18,57:76:21:403,0,21 chrII 796545 . C T 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.726;DP=74;Dels=0.04;FS=10.401;HaplotypeScore=28.3958;MLEAC=1;MLEAF=0.500;MQ=40.35;MQ0=0;MQRankSum=-1.801;QD=0.49;ReadPosRankSum=4.748;SB=-1.840e+02 GT:AD:DP:GQ:PL 0/1:34,37:71:66:66,0,293 chrII 796593 . A T 480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.02;MQ0=0;MQRankSum=-0.527;QD=10.43;ReadPosRankSum=1.657;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:54:513,54,0 chrII 796619 . C T 669 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.9112;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=12.87;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:75:702,75,0 chrII 796648 . C T 1120 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;QD=16.23;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1153,120,0 chrII 796710 . T G 1870 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=23.09;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1903,201,0 chrII 796726 . T A 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.462;QD=21.56;ReadPosRankSum=1.694;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1995,213,0 chrII 796981 . G A 4816.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.70;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4816,499,0 chrII 797056 . T C 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.196;DP=180;Dels=0.00;FS=9.179;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.439;QD=22.10;ReadPosRankSum=3.352;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:4,175:180:99:3978,438,0 chrII 797164 . C T 4670.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.5752;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.58;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4670,493,0 chrII 797248 . G A 5214.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.9700;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:5214,538,0 chrII 797326 . T C 3474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=160;Dels=0.00;FS=3.716;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.065;QD=21.71;ReadPosRankSum=1.689;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3474,378,0 chrII 797413 . G C 4953.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=19.0638;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=23.25;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4953,540,0 chrII 797569 . T C 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=159;Dels=0.00;FS=4.021;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-0.033;QD=23.54;ReadPosRankSum=1.710;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3743,391,0 chrII 797593 . A G 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=137;Dels=0.00;FS=2.677;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=-0.425;QD=21.80;ReadPosRankSum=2.395;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3019,321,0 chrII 797599 . C G 2890 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.6884;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.89;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2923,309,0 chrII 797646 . T C 2703 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.31;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2736,288,0 chrII 797653 . G A 2616 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=18.55;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2649,285,0 chrII 797731 . T G 3589.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2756;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.93;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3589,375,0 chrII 797758 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.15;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,150:154:99:3565,381,0 chrII 797893 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=24.74;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2903,300,0 chrII 798058 . C T 5089.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.5365;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.78;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5089,532,0 chrII 798262 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.1110;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=16.21;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:3632,387,0 chrII 798782 . A G 3796.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.97;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3796,399,0 chrII 798886 . C A 3584.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=14.3656;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=25.42;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3584,373,0 chrII 799021 . C T 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.451;DP=113;Dels=0.00;FS=3.732;HaplotypeScore=12.3709;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-1.701;QD=23.20;ReadPosRankSum=0.858;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2655,276,0 chrII 799111 . C T 2331 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.81;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2364,243,0 chrII 799230 . T C 2173 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.17;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2206,240,0 chrII 799240 . G A 2176 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.65;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2209,228,0 chrII 799511 . C T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=22.37;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3289,348,0 chrII 799523 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=4.658;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-0.319;QD=21.13;ReadPosRankSum=1.709;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3266,348,0 chrII 799566 . A T 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=155;Dels=0.00;FS=7.322;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=-0.610;QD=19.62;ReadPosRankSum=2.339;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3074,318,0 chrII 799572 . A G 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=7.177;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;MQRankSum=-1.307;QD=17.78;ReadPosRankSum=2.403;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:2825,312,0 chrII 799651 . G A 4180.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.3064;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.47;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4180,450,0 chrII 799718 . A G 4052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;MQRankSum=-0.890;QD=22.51;ReadPosRankSum=2.367;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:2,176:180:99:4052,427,0 chrII 799745 . A T 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4216;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;MQRankSum=-1.372;QD=23.84;ReadPosRankSum=1.710;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3695,402,0 chrII 799796 . A G 2425 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=3.4908;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=22.45;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2458,255,0 chrII 799806 . G A 2691 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.2239;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=23.61;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2724,288,0 chrII 799979 . C T 1386 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.23;MQ0=0;QD=13.59;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1419,147,0 chrII 800008 . C T 1323 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=14.07;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1356,141,0 chrII 800013 . T C 1348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;MQRankSum=-1.318;QD=14.65;ReadPosRankSum=1.694;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1381,147,0 chrII 800026 . G T 1196 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;QD=13.91;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1229,126,0 chrII 800048 . G T 1033 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=38.55;MQ0=0;QD=14.55;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1066,111,0 chrII 800049 . C T 1043 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=38.55;MQ0=0;QD=14.69;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1076,111,0 chrII 800115 . C T 2068 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;QD=22.24;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2101,219,0 chrII 800195 . T C 1840 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.98;MQ0=0;QD=23.00;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1873,198,0 chrII 800316 . C T 1353 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.26;MQ0=0;QD=23.33;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1386,141,0 chrII 800371 . C T 465 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;QD=5.96;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:54:498,54,0 chrII 800441 . C G 2122 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=25.26;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2155,231,0 chrII 800655 . T C 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=145;Dels=0.00;FS=7.082;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.162;QD=23.81;ReadPosRankSum=2.364;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3453,363,0 chrII 800694 . A G 3647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.5846;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.391;QD=23.38;ReadPosRankSum=1.710;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3647,384,0 chrII 800746 . T C 3650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=157;Dels=0.00;FS=9.895;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.930;QD=23.25;ReadPosRankSum=2.955;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3650,393,0 chrII 800817 . C T 3348.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.74;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3348,346,0 chrII 800856 . G A 2480 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=18.65;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2513,261,0 chrII 800859 . G A 2510 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=18.73;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2543,261,0 chrII 800911 . A C 2560 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=16.20;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2593,276,0 chrII 800918 . C T 2655 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=15.99;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:2688,279,0 chrII 801195 . T C 5803.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=10.4318;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=24.91;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5803,616,0 chrII 801404 . T C 3443.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=23.74;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3443,363,0 chrII 801410 . T C 3226.07 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=23.38;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3259,345,0 chrII 801496 . T C 4252.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.2206;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;QD=24.02;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4252,471,0 chrII 801524 . T C 4351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=182;Dels=0.00;FS=2.914;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.66;MQ0=0;MQRankSum=1.904;QD=23.91;ReadPosRankSum=2.422;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:4351,468,0 chrII 801546 . G A 4294.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=43.74;MQ0=0;QD=24.26;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4294,445,0 chrII 801661 . A T 2207 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.785;DP=101;Dels=0.00;FS=24.363;HaplotypeScore=2.3404;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;MQRankSum=1.506;QD=21.85;ReadPosRankSum=2.655;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:4,97:101:99:2240,243,0 chrII 801662 . T A 2185 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.657;DP=100;Dels=0.00;FS=31.514;HaplotypeScore=2.3404;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;MQRankSum=0.981;QD=21.85;ReadPosRankSum=3.005;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:5,95:100:99:2218,222,0 chrII 801665 . A C 2308 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.082;DP=101;Dels=0.00;FS=29.081;HaplotypeScore=1.5518;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;MQRankSum=0.150;QD=22.85;ReadPosRankSum=2.172;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:4,96:101:99:2341,224,0 chrII 801676 . G T 1943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.661;DP=105;Dels=0.00;FS=98.222;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;MQRankSum=-0.549;QD=18.50;ReadPosRankSum=3.389;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:12,93:105:99:1976,172,0 chrII 801677 . A G 1919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.707;DP=105;Dels=0.00;FS=101.374;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;MQRankSum=0.371;QD=18.28;ReadPosRankSum=3.403;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:13,92:105:99:1952,168,0 chrII 801689 . A G 2026 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.641;DP=114;Dels=0.00;FS=7.347;HaplotypeScore=5.5489;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;MQRankSum=1.641;QD=17.77;ReadPosRankSum=0.577;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2059,201,0 chrII 801690 . T G 2033 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.461;DP=116;Dels=0.00;FS=21.557;HaplotypeScore=7.1263;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;MQRankSum=1.165;QD=17.53;ReadPosRankSum=2.366;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2066,207,0 chrII 801693 . T C 1902 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.981;DP=129;Dels=0.00;FS=270.954;HaplotypeScore=7.1263;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;MQRankSum=0.496;QD=14.74;ReadPosRankSum=2.639;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:26,103:129:99:1935,121,0 chrII 801699 . G A 2185 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.138;DP=140;Dels=0.00;FS=6.548;HaplotypeScore=8.9318;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;MQRankSum=1.658;QD=15.61;ReadPosRankSum=1.262;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2218,216,0 chrII 801707 . T C 1659 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.328;DP=159;Dels=0.00;FS=418.267;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;MQRankSum=-2.732;QD=10.43;ReadPosRankSum=2.747;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:50,109:159:39:1692,39,0 chrII 801710 . A T 1782 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=7.372;DP=162;Dels=0.00;FS=415.105;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;MQRankSum=0.578;QD=11.00;ReadPosRankSum=2.447;SB=-9.976e-03 GT:AD:DP:GQ:PL 1/1:57,105:162:34:1815,34,0 chrII 801713 . G A 1605.21 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=161;Dels=0.00;FS=445.133;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;MQRankSum=-0.259;QD=9.97;ReadPosRankSum=1.590;SB=-2.194e-01 GT:AD:DP:GQ:PL 1/1:58,103:161:16:1638,16,0 chrII 801716 . A G 1572 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=8.627;DP=167;Dels=0.00;FS=442.286;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;MQRankSum=1.062;QD=9.41;ReadPosRankSum=0.950;SB=-6.693e-03 GT:AD:DP:GQ:PL 1/1:68,99:167:47:1605,47,0 chrII 801720 . A G 103.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;DP=165;Dels=0.00;FS=473.567;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=28.65;MQ0=0;MQRankSum=0.998;QD=0.62;ReadPosRankSum=0.674;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:97,68:165:99:133,0,1473 chrII 801722 . C T 1387.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.728;DP=165;Dels=0.00;FS=479.892;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=28.65;MQ0=0;MQRankSum=-0.349;QD=8.41;ReadPosRankSum=-1.179;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:73,92:165:99:1417,0,148 chrII 801728 . T C 908.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.115;DP=160;Dels=0.00;FS=463.092;HaplotypeScore=1.8600;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=0;MQRankSum=-0.096;QD=5.68;ReadPosRankSum=-2.736;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:91,69:160:99:938,0,239 chrII 801729 . A C 863.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.155;DP=160;Dels=0.00;FS=458.169;HaplotypeScore=1.8600;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=0;MQRankSum=-0.589;QD=5.39;ReadPosRankSum=-3.386;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:91,69:160:99:893,0,295 chrII 801731 . G A 877.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.781;DP=165;Dels=0.00;FS=475.046;HaplotypeScore=1.8600;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=0;MQRankSum=-1.191;QD=5.32;ReadPosRankSum=-4.333;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:96,69:165:99:907,0,322 chrII 801732 . T C 897.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.106;DP=169;Dels=0.00;FS=484.270;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=28.72;MQ0=0;MQRankSum=0.993;QD=5.31;ReadPosRankSum=-3.753;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:100,69:169:99:927,0,375 chrII 801738 . C A 922.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.160;DP=174;Dels=0.00;FS=495.406;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=28.73;MQ0=0;MQRankSum=0.135;QD=5.30;ReadPosRankSum=-9.697;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:105,69:174:99:952,0,422 chrII 801740 . C A 892.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.656;DP=177;Dels=0.00;FS=501.890;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=28.73;MQ0=0;MQRankSum=-0.877;QD=5.04;ReadPosRankSum=-9.756;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:108,69:177:99:922,0,431 chrII 801755 . G A 818 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=6.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,118:118:90:851,90,0 chrII 801765 . A G 910 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=6.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:943,102,0 chrII 801772 . G A 942 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=7.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:975,108,0 chrII 801773 . C T 1030 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=7.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1063,111,0 chrII 801788 . C T 1383 SnpCluster AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=6.09;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:1416,147,0 chrII 801794 . C T 1358 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.918;DP=233;Dels=0.00;FS=518.998;HaplotypeScore=7.7804;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;MQRankSum=-0.117;QD=5.83;ReadPosRankSum=6.038;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:63,170:233:99:1391,122,0 chrII 801797 . C T 1436 SnpCluster AC=2;AF=1.00;AN=2;DP=235;Dels=0.01;FS=0.000;HaplotypeScore=10.3410;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=6.11;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:1469,153,0 chrII 801813 . C A 1534 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.8188;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=1;QD=7.24;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:1,189:212:99:1567,168,0 chrII 801824 . T C 1245 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.997;DP=206;Dels=0.00;FS=265.792;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=1;MQRankSum=-0.520;QD=6.04;ReadPosRankSum=-0.308;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:24,182:206:99:1278,118,0 chrII 801825 . C G 1242 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=1;MQRankSum=-1.022;QD=6.03;ReadPosRankSum=1.715;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:2,204:206:99:1275,147,0 chrII 801827 . A C 1299 SnpCluster AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=1;QD=6.31;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,183:206:99:1332,144,0 chrII 801830 . G A 1406 SnpCluster AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=1;QD=5.88;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,216:239:99:1439,147,0 chrII 801839 . T G 1467 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.092;DP=262;Dels=0.00;FS=289.982;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=1;MQRankSum=-0.236;QD=5.60;ReadPosRankSum=2.599;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:24,238:262:99:1500,148,0 chrII 801848 . G A 1122 SnpCluster AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=1;QD=4.38;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:1,255:256:99:1155,132,0 chrII 801849 . A G 1052 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.955;DP=256;Dels=0.00;FS=301.264;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=1;MQRankSum=-0.691;QD=4.11;ReadPosRankSum=7.495;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:23,233:256:99:1085,100,0 chrII 801854 . T C 1453 SnpCluster AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=1;QD=5.79;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,250:251:99:1486,156,0 chrII 801860 . C T 1084 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=1;QD=5.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:1117,120,0 chrII 801861 . G A 1034 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=1;QD=5.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:1067,120,0 chrII 801862 . A C 1042 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=1;QD=5.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:1075,120,0 chrII 801864 . T C 1124 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=1;MQRankSum=0.439;QD=5.56;ReadPosRankSum=1.715;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:1157,120,0 chrII 801869 . T C 1176 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=1;MQRankSum=-0.996;QD=4.88;ReadPosRankSum=1.718;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,239:241:99:1209,126,0 chrII 801872 . C T 1313 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=1;QD=5.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:1346,138,0 chrII 801877 . G A 1363 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=1;QD=5.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:1396,141,0 chrII 801881 . A T 1035 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=1;QD=5.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:1068,111,0 chrII 801882 . C T 1056 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=1;QD=5.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:1089,111,0 chrII 801886 . G A 1041 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=1;QD=5.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:1074,111,0 chrII 801887 . C A 1056 SnpCluster AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=1;QD=5.36;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,196:197:99:1089,111,0 chrII 801888 . C T 1039 SnpCluster AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=1;QD=5.25;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,196:198:99:1072,111,0 chrII 801897 . G A 1400 SnpCluster AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.01;MQ0=0;QD=5.20;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,268:269:99:1433,153,0 chrII 801899 . T C 1549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.777;DP=282;Dels=0.00;FS=3.406;HaplotypeScore=4.7307;MLEAC=2;MLEAF=1.00;MQ=31.21;MQ0=0;MQRankSum=-2.679;QD=5.49;ReadPosRankSum=4.187;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:6,276:282:99:1582,174,0 chrII 801984 . T C 8542.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=375;Dels=0.00;FS=0.000;HaplotypeScore=23.3169;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;MQRankSum=-1.629;QD=22.78;ReadPosRankSum=1.723;SB=-4.157e+03 GT:AD:DP:GQ:PL 1/1:1,370:375:99:8542,940,0 chrII 802198 . A G 8159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=328;Dels=0.00;FS=2.776;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=0.837;QD=24.88;ReadPosRankSum=2.389;SB=-3.413e+03 GT:AD:DP:GQ:PL 1/1:2,325:328:99:8159,874,0 chrII 802257 . C T 7142.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=23.65;SB=-3.255e+03 GT:AD:DP:GQ:PL 1/1:0,299:302:99:7142,751,0 chrII 802259 . G T 7004.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=23.50;SB=-3.086e+03 GT:AD:DP:GQ:PL 1/1:0,298:298:99:7004,745,0 chrII 802329 . G A 5961.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=20.14;SB=-3.693e+03 GT:AD:DP:GQ:PL 1/1:0,295:296:99:5961,631,0 chrII 802358 . A G 6013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=284;Dels=0.00;FS=9.406;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-1.323;QD=21.17;ReadPosRankSum=2.954;SB=-3.538e+03 GT:AD:DP:GQ:PL 1/1:3,280:284:99:6013,637,0 chrII 802428 . T C 5496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=237;Dels=0.00;FS=3.066;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.936;QD=23.19;ReadPosRankSum=1.673;SB=-2.976e+03 GT:AD:DP:GQ:PL 1/1:1,234:237:99:5496,583,0 chrII 802482 . A T 5987.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=23.85;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5987,637,0 chrII 802651 . A G 5652.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=7.4618;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;MQRankSum=-0.762;QD=20.55;ReadPosRankSum=-1.127;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:1,274:275:99:5652,592,0 chrII 802654 . T C 5169.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.728;DP=257;Dels=0.00;FS=21.877;HaplotypeScore=5.8845;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;MQRankSum=4.913;QD=20.11;ReadPosRankSum=3.437;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:16,241:257:99:5169,517,0 chrII 802656 . T C 5322.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=9.0392;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=-1.547;QD=20.31;ReadPosRankSum=0.317;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:1,261:262:99:5322,547,0 chrII 802697 . C T 2305.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.412;DP=316;Dels=0.00;FS=13.188;HaplotypeScore=14.2397;MLEAC=1;MLEAF=0.500;MQ=50.14;MQ0=0;MQRankSum=-6.549;QD=7.29;ReadPosRankSum=0.850;SB=-9.780e+02 GT:AD:DP:GQ:PL 0/1:167,145:316:99:2335,0,2703 chrII 802713 . A T 2849.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244;DP=350;Dels=0.00;FS=25.435;HaplotypeScore=24.0623;MLEAC=1;MLEAF=0.500;MQ=50.04;MQ0=0;MQRankSum=-6.316;QD=8.14;ReadPosRankSum=2.050;SB=-9.870e+02 GT:AD:DP:GQ:PL 0/1:185,165:350:99:2879,0,3203 chrII 802751 . G C 1178.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.731;DP=424;Dels=0.00;FS=92.008;HaplotypeScore=29.9466;MLEAC=1;MLEAF=0.500;MQ=54.48;MQ0=0;MQRankSum=-13.632;QD=2.78;ReadPosRankSum=1.002;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:332,88:424:99:1208,0,6632 chrII 802760 . C T 935.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.079;DP=417;Dels=0.00;FS=80.865;HaplotypeScore=22.3602;MLEAC=1;MLEAF=0.500;MQ=54.89;MQ0=0;MQRankSum=-13.260;QD=2.24;ReadPosRankSum=0.880;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:334,81:417:99:965,0,6819 chrII 802822 . T G 1678.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.054;DP=382;Dels=0.00;FS=7.794;HaplotypeScore=36.8931;MLEAC=1;MLEAF=0.500;MQ=55.43;MQ0=0;MQRankSum=4.769;QD=4.39;ReadPosRankSum=0.906;SB=-9.230e+02 GT:AD:DP:GQ:PL 0/1:267,113:382:99:1708,0,5703 chrII 803024 . T C 11815.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.264;DP=549;Dels=0.00;FS=115.016;HaplotypeScore=40.8184;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=10.575;QD=21.52;ReadPosRankSum=0.855;SB=-4.255e+03 GT:AD:DP:GQ:PL 1/1:50,496:549:99:11815,1102,0 chrII 803233 . T C 14409.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.738;DP=613;Dels=0.00;FS=16.879;HaplotypeScore=39.2294;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.463;QD=23.51;ReadPosRankSum=3.842;SB=-7.702e+03 GT:AD:DP:GQ:PL 1/1:5,604:613:99:14409,1532,0 chrII 803528 . T C 1043.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.064;DP=581;Dels=0.00;FS=40.061;HaplotypeScore=36.9062;MLEAC=1;MLEAF=0.500;MQ=52.86;MQ0=0;MQRankSum=-14.066;QD=1.80;ReadPosRankSum=0.613;SB=-7.510e+02 GT:AD:DP:GQ:PL 0/1:410,165:581:99:1073,0,8116 chrII 803532 . G A 7644.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;DP=577;Dels=0.00;FS=42.821;HaplotypeScore=43.2156;MLEAC=1;MLEAF=0.500;MQ=52.58;MQ0=0;MQRankSum=13.082;QD=13.25;ReadPosRankSum=-1.338;SB=-4.231e+03 GT:AD:DP:GQ:PL 0/1:170,404:577:99:7644,0,1210 chrII 803555 . T C 7204.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.872;DP=589;Dels=0.00;FS=18.788;HaplotypeScore=105.8589;MLEAC=1;MLEAF=0.500;MQ=52.75;MQ0=0;MQRankSum=13.750;QD=12.23;ReadPosRankSum=-3.144;SB=-4.451e+03 GT:AD:DP:GQ:PL 0/1:193,395:589:99:7204,0,2040 chrII 803737 . C T 8940.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.910;DP=660;Dels=0.00;FS=12.633;HaplotypeScore=56.2702;MLEAC=1;MLEAF=0.500;MQ=55.17;MQ0=0;MQRankSum=10.863;QD=13.55;ReadPosRankSum=0.103;SB=-5.011e+03 GT:AD:DP:GQ:PL 0/1:213,442:660:99:8940,0,3211 chrII 803861 . G A 1384.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.988;DP=691;Dels=0.00;FS=14.613;HaplotypeScore=32.1922;MLEAC=1;MLEAF=0.500;MQ=55.53;MQ0=0;MQRankSum=-5.502;QD=2.00;ReadPosRankSum=0.188;SB=-5.670e+02 GT:AD:DP:GQ:PL 0/1:555,136:691:99:1414,0,11734 chrII 803935 . G A 289.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.796;DP=651;Dels=0.00;FS=20.608;HaplotypeScore=52.0904;MLEAC=1;MLEAF=0.500;MQ=56.93;MQ0=0;MQRankSum=-8.237;QD=0.44;ReadPosRankSum=-0.121;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:539,110:651:99:319,0,11595 chrII 803948 . G A 117.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.611;DP=655;Dels=0.00;FS=29.478;HaplotypeScore=20.9577;MLEAC=1;MLEAF=0.500;MQ=57.03;MQ0=0;MQRankSum=-9.344;QD=0.18;ReadPosRankSum=2.255;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:550,102:655:99:147,0,11781 chrII 803954 . G A 159.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;DP=681;Dels=0.00;FS=33.469;HaplotypeScore=25.4407;MLEAC=1;MLEAF=0.500;MQ=56.89;MQ0=0;MQRankSum=-9.933;QD=0.23;ReadPosRankSum=1.841;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:571,106:681:99:189,0,12306 chrII 803964 . G A 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.050;DP=695;Dels=0.00;FS=19.188;HaplotypeScore=30.2005;MLEAC=1;MLEAF=0.500;MQ=56.72;MQ0=0;MQRankSum=-11.643;QD=0.10;ReadPosRankSum=0.543;SB=-1.960e+02 GT:AD:DP:GQ:PL 0/1:583,111:695:99:101,0,12521 chrII 804089 . A G 764.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.233;DP=756;Dels=0.00;FS=3.590;HaplotypeScore=26.3429;MLEAC=1;MLEAF=0.500;MQ=54.87;MQ0=0;MQRankSum=-10.188;QD=1.01;ReadPosRankSum=0.257;SB=-5.470e+02 GT:AD:DP:GQ:PL 0/1:619,134:756:99:794,0,13430 chrII 804095 . A G 780.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.282;DP=782;Dels=0.00;FS=2.473;HaplotypeScore=66.7547;MLEAC=1;MLEAF=0.500;MQ=55.08;MQ0=0;MQRankSum=-10.488;QD=1.00;ReadPosRankSum=0.538;SB=-6.110e+02 GT:AD:DP:GQ:PL 0/1:639,138:782:99:810,0,13822 chrII 804104 . A G 587.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.357;DP=784;Dels=0.00;FS=0.715;HaplotypeScore=53.2011;MLEAC=1;MLEAF=0.500;MQ=55.14;MQ0=0;MQRankSum=-12.001;QD=0.75;ReadPosRankSum=0.861;SB=-6.390e+02 GT:AD:DP:GQ:PL 0/1:641,138:784:99:617,0,14385 chrII 804112 . C A 853.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.573;DP=796;Dels=0.00;FS=11.680;HaplotypeScore=59.0565;MLEAC=1;MLEAF=0.500;MQ=55.35;MQ0=0;MQRankSum=-12.097;QD=1.07;ReadPosRankSum=-1.457;SB=-8.330e+02 GT:AD:DP:GQ:PL 0/1:636,155:796:99:883,0,14026 chrII 804209 . G A 11139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;DP=928;Dels=0.00;FS=20.832;HaplotypeScore=52.4111;MLEAC=1;MLEAF=0.500;MQ=54.76;MQ0=0;MQRankSum=2.486;QD=12.00;ReadPosRankSum=-0.875;SB=-4.777e+03 GT:AD:DP:GQ:PL 0/1:331,591:928:99:11139,0,4965 chrII 804245 . G A 2204.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;DP=941;Dels=0.00;FS=6.520;HaplotypeScore=39.1642;MLEAC=1;MLEAF=0.500;MQ=51.95;MQ0=0;MQRankSum=-21.108;QD=2.34;ReadPosRankSum=-3.350;SB=-1.646e+03 GT:AD:DP:GQ:PL 0/1:618,323:941:99:2234,0,13434 chrII 804248 . G A 2074.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=16.009;DP=926;Dels=0.00;FS=13.907;HaplotypeScore=29.4989;MLEAC=1;MLEAF=0.500;MQ=51.98;MQ0=0;MQRankSum=-21.340;QD=2.24;ReadPosRankSum=-2.193;SB=-1.564e+03 GT:AD:DP:GQ:PL 0/1:618,307:926:99:2104,0,12929 chrII 804259 . C T 94.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.580;DP=830;Dels=0.00;FS=7.821;HaplotypeScore=35.2268;MLEAC=1;MLEAF=0.500;MQ=53.11;MQ0=0;MQRankSum=-20.840;QD=0.11;ReadPosRankSum=7.966;SB=-1.071e+03 GT:AD:DP:GQ:PL 0/1:612,213:830:99:124,0,13256 chrII 804260 . T C 373.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.883;DP=832;Dels=0.00;FS=4.915;HaplotypeScore=32.1268;MLEAC=1;MLEAF=0.500;MQ=53.09;MQ0=0;MQRankSum=-21.143;QD=0.45;ReadPosRankSum=9.031;SB=-1.020e+03 GT:AD:DP:GQ:PL 0/1:625,207:832:99:403,0,13748 chrII 804263 . A G 1018.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-14.179;DP=901;Dels=0.00;FS=0.838;HaplotypeScore=37.4483;MLEAC=1;MLEAF=0.500;MQ=51.89;MQ0=0;MQRankSum=-23.046;QD=1.13;ReadPosRankSum=3.027;SB=-1.853e+03 GT:AD:DP:GQ:PL 0/1:633,268:901:99:1048,0,13742 chrII 804266 . G T 1228.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.361;DP=907;Dels=0.00;FS=1.118;HaplotypeScore=41.3805;MLEAC=1;MLEAF=0.500;MQ=51.66;MQ0=0;MQRankSum=-22.001;QD=1.35;ReadPosRankSum=1.312;SB=-1.978e+03 GT:AD:DP:GQ:PL 0/1:618,289:907:99:1258,0,12590 chrII 804272 . G A 1775.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.097;DP=905;Dels=0.00;FS=0.252;HaplotypeScore=47.5099;MLEAC=1;MLEAF=0.500;MQ=51.13;MQ0=0;MQRankSum=-21.868;QD=1.96;ReadPosRankSum=-0.165;SB=-2.461e+03 GT:AD:DP:GQ:PL 0/1:597,307:905:99:1805,0,12742 chrII 804278 . G A 1677.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.597;DP=895;Dels=0.00;FS=2.056;HaplotypeScore=47.7941;MLEAC=1;MLEAF=0.500;MQ=50.97;MQ0=0;MQRankSum=-20.994;QD=1.87;ReadPosRankSum=-1.723;SB=-2.633e+03 GT:AD:DP:GQ:PL 0/1:575,317:895:99:1707,0,11962 chrII 804303 . A G 11294.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;DP=869;Dels=0.00;FS=6.005;HaplotypeScore=28.6584;MLEAC=1;MLEAF=0.500;MQ=51.33;MQ0=0;MQRankSum=-4.720;QD=13.00;ReadPosRankSum=-1.335;SB=-7.678e+03 GT:AD:DP:GQ:PL 0/1:190,677:869:99:11294,0,2320 chrII 804467 . T G 17257.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.702;DP=781;DS;Dels=0.00;FS=26.107;HaplotypeScore=56.4011;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=-1.234;QD=22.10;ReadPosRankSum=3.837;SB=-6.237e+03 GT:AD:DP:GQ:PL 1/1:5,769:781:99:17257,1844,0 chrII 804522 . C T 16670.01 filter AC=2;AF=1.00;AN=2;DP=689;Dels=0.00;FS=0.000;HaplotypeScore=38.7712;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=24.19;SB=-7.248e+03 GT:AD:DP:GQ:PL 1/1:0,683:689:99:16670,1745,0 chrII 804556 . T C 9053.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.424;DP=732;Dels=0.00;FS=34.551;HaplotypeScore=41.1233;MLEAC=1;MLEAF=0.500;MQ=49.34;MQ0=0;MQRankSum=-7.088;QD=12.37;ReadPosRankSum=-1.766;SB=-4.230e+03 GT:AD:DP:GQ:PL 0/1:194,529:732:99:9053,0,2835 chrII 804560 . T C 15534.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.832;DP=717;Dels=0.00;FS=19.897;HaplotypeScore=18.3497;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;MQRankSum=-1.316;QD=21.67;ReadPosRankSum=3.799;SB=-7.638e+03 GT:AD:DP:GQ:PL 1/1:5,707:717:99:15534,1625,0 chrII 804571 . A C 10296.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;DP=725;Dels=0.00;FS=420.675;HaplotypeScore=152.1746;MLEAC=1;MLEAF=0.500;MQ=50.25;MQ0=0;MQRankSum=12.915;QD=14.20;ReadPosRankSum=10.485;SB=-6.163e+03 GT:AD:DP:GQ:PL 0/1:154,568:725:99:10296,0,1518 chrII 804572 . C T 1465.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.411;DP=713;Dels=0.00;FS=341.496;HaplotypeScore=266.4004;MLEAC=1;MLEAF=0.500;MQ=50.34;MQ0=0;MQRankSum=-15.216;QD=2.05;ReadPosRankSum=-9.777;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:572,139:713:99:1495,0,10509 chrII 804646 . T C 10147.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.727;DP=444;Dels=0.00;FS=16.815;HaplotypeScore=36.8197;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.380;QD=22.85;ReadPosRankSum=3.838;SB=-5.474e+03 GT:AD:DP:GQ:PL 1/1:5,434:444:99:10147,1117,0 chrII 804707 . A G 10632.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=440;Dels=0.00;FS=0.000;HaplotypeScore=29.0499;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.591;QD=24.16;ReadPosRankSum=1.684;SB=-5.786e+03 GT:AD:DP:GQ:PL 1/1:1,436:440:99:10632,1129,0 chrII 804728 . G A 2318.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.043;DP=436;Dels=0.00;FS=0.775;HaplotypeScore=25.6760;MLEAC=1;MLEAF=0.500;MQ=57.00;MQ0=0;MQRankSum=0.060;QD=5.32;ReadPosRankSum=0.177;SB=-1.152e+03 GT:AD:DP:GQ:PL 0/1:294,140:436:99:2348,0,5883 chrII 804775 . G C 9872.01 filter AC=2;AF=1.00;AN=2;DP=461;Dels=0.00;FS=0.000;HaplotypeScore=28.6452;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=21.41;SB=-3.382e+03 GT:AD:DP:GQ:PL 1/1:0,452:461:99:9872,1045,0 chrII 804912 . A C 8599.01 filter AC=2;AF=1.00;AN=2;DP=430;Dels=0.00;FS=0.000;HaplotypeScore=23.8245;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=3;QD=20.00;SB=-4.088e+03 GT:AD:DP:GQ:PL 1/1:0,429:430:99:8599,907,0 chrII 804961 . A C 8364.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.301;DP=370;Dels=0.00;FS=9.104;HaplotypeScore=27.1513;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=11;MQRankSum=-2.820;QD=22.61;ReadPosRankSum=3.437;SB=-4.193e+03 GT:AD:DP:GQ:PL 1/1:4,366:370:99:8364,886,0 chrII 805021 . T A 2610 filter AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=25.59;MQ0=9;QD=9.03;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:2643,282,0 chrII 805045 . G A 485 filter AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=14.64;MQ0=5;QD=1.94;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,249:250:54:518,54,0 chrII 805115 . C T 2884 filter AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=26.59;MQ0=4;QD=13.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:2917,318,0 chrII 805208 . T G 1757 filter AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=38;QD=13.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,131:135:99:1790,195,0 chrII 805608 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.87;MQ0=43;QD=0.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:46:6:55,6,0 chrII 806766 . T C 870 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=13.19;MQ0=81;MQRankSum=-2.407;QD=6.08;ReadPosRankSum=2.364;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,136:143:99:903,102,0 chrII 807505 . A G 100.26 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.47;MQ0=25;QD=3.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:15:133,15,0 chrII 807585 . G A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.18;MQ0=8;QD=2.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,6:10:6:57,6,0 chrII 807590 . G A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.94;MQ0=8;QD=1.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:13:6:57,6,0 chrII 807614 . T C 217.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.781;DP=52;Dels=0.00;FS=17.240;HaplotypeScore=4.7755;MLEAC=1;MLEAF=0.500;MQ=24.49;MQ0=8;MQRankSum=3.447;QD=4.17;ReadPosRankSum=0.206;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,17:52:99:247,0,315 chrII 807777 . G T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.17;MQ0=0;QD=3.80;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:54,6,0 chrII 807807 . A T 650 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=7;QD=15.48;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:69:683,69,0 chrII 807820 . G A 649 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=8;QD=14.75;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:69:682,69,0 chrII 807828 . T C 602 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=48;Dels=0.00;FS=20.917;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=9;MQRankSum=-0.987;QD=12.54;ReadPosRankSum=2.324;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:2,46:48:69:635,69,0 chrII 807849 . T C 706 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.43;MQ0=10;QD=11.77;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:78:739,78,0 chrII 807878 . G T 209.01 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=7.4766;MLEAC=2;MLEAF=1.00;MQ=25.08;MQ0=7;QD=5.36;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:27:242,27,0 chrII 807879 . A G 191.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=38;Dels=0.00;FS=6.463;HaplotypeScore=6.6880;MLEAC=2;MLEAF=1.00;MQ=24.19;MQ0=7;MQRankSum=0.040;QD=5.03;ReadPosRankSum=2.292;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:2,36:38:27:224,27,0 chrII 807895 . C G 58.97 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.17;MQ0=4;QD=2.36;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:9:91,9,0 chrII 807897 . C T 47.97 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.17;MQ0=4;QD=1.92;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:9:80,9,0 chrII 807912 . A G 52.97 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.12;MQ0=3;QD=1.96;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:9:85,9,0 chrII 807941 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.10;MQ0=2;QD=0.91;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,23:24:6:53,6,0 chrII 807970 . T C 76.51 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.46;MQ0=2;QD=3.83;SB=-2.826e+01 GT:AD:DP:GQ:PL 1/1:1,19:20:12:109,12,0 chrII 807982 . A T 128.13 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=16.57;MQ0=14;QD=3.46;SB=-2.707e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:18:161,18,0 chrII 808042 . A G 410 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.50;MQ0=19;QD=9.32;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:48:443,48,0 chrII 808055 . G C 474 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=22.31;MQ0=23;QD=8.32;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:54:507,54,0 chrII 808127 . C A 1656 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=120;Dels=0.00;FS=150.954;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=34;MQRankSum=5.504;QD=13.80;ReadPosRankSum=-0.653;SB=-1.401e+01 GT:AD:DP:GQ:PL 1/1:23,97:120:86:1689,86,0 chrII 808197 . G C 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.370;DP=51;Dels=0.00;FS=50.171;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.95;MQ0=28;MQRankSum=-1.200;QD=0.59;ReadPosRankSum=0.031;SB=0.631 GT:AD:DP:GQ:PL 0/1:39,12:51:60:60,0,240 chrII 808218 . G T 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.166;DP=33;Dels=0.00;FS=20.792;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.64;MQ0=23;MQRankSum=-0.296;QD=1.39;ReadPosRankSum=-2.166;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:8,24:33:40:76,0,40 chrII 808225 . C G 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;DP=32;Dels=0.00;FS=20.792;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.88;MQ0=22;MQRankSum=-0.296;QD=1.03;ReadPosRankSum=-2.166;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:8,24:32:39:63,0,39 chrII 808261 . G A 571 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=16;QD=12.41;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:66:604,66,0 chrII 808280 . C T 1331 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.31;MQ0=21;QD=17.29;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1364,153,0 chrII 808315 . T C 1995 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=116;Dels=0.00;FS=8.305;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=33.76;MQ0=28;MQRankSum=0.591;QD=17.20;ReadPosRankSum=0.591;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2028,213,0 chrII 808401 . C T 393 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=16.77;MQ0=67;QD=4.37;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:45:426,45,0 chrII 808409 . A G 255 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.44;MQ0=65;MQRankSum=-0.306;QD=3.11;ReadPosRankSum=1.531;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:30:288,30,0 chrII 808441 . G A 180.06 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.52;MQ0=34;QD=4.09;SB=-1.096e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:21:213,21,0 chrII 808510 . G A 272 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.74;MQ0=26;QD=6.97;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:0,39:39:30:305,30,0 chrII 808515 . T A 256 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.95;MQ0=27;QD=6.24;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,41:41:30:289,30,0 chrII 808613 . A G 73.51 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.93;MQ0=66;QD=1.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,63:70:12:106,12,0 chrII 808618 . G A 85.51 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.87;MQ0=65;QD=1.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:73:12:118,12,0 chrII 808627 . T G 324 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.705;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=13.7707;MLEAC=2;MLEAF=1.00;MQ=18.96;MQ0=60;MQRankSum=-3.595;QD=3.24;ReadPosRankSum=4.093;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:7,93:100:42:357,42,0 chrII 808879 . T C 1424.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.246;DP=474;Dels=0.00;FS=25.870;HaplotypeScore=15.2562;MLEAC=1;MLEAF=0.500;MQ=29.21;MQ0=22;MQRankSum=-3.506;QD=3.00;ReadPosRankSum=0.793;SB=-3.230e+02 GT:AD:DP:GQ:PL 0/1:356,117:474:99:1454,0,7244 chrII 809028 . C T 2100 filter AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=3.9658;MLEAC=2;MLEAF=1.00;MQ=16.08;MQ0=96;QD=7.78;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,270:270:99:2133,240,0 chrII 809220 . T C 7200.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.715;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=14.5281;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=32;MQRankSum=0.352;QD=23.30;ReadPosRankSum=3.828;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,300:309:99:7200,778,0 chrII 809320 . G C 5618.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.059;DP=411;Dels=0.00;FS=3.434;HaplotypeScore=23.1662;MLEAC=2;MLEAF=1.00;MQ=31.91;MQ0=44;MQRankSum=5.909;QD=13.67;ReadPosRankSum=-1.270;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:63,342:411:99:5618,603,0 chrII 809332 . C T 5268.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=373;Dels=0.00;FS=3.761;HaplotypeScore=9.7246;MLEAC=2;MLEAF=1.00;MQ=30.97;MQ0=48;MQRankSum=5.883;QD=14.12;ReadPosRankSum=-2.587;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:66,300:373:99:5268,565,0 chrII 809335 . C T 5570.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.237;DP=362;Dels=0.00;FS=3.699;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=49;MQRankSum=5.374;QD=15.39;ReadPosRankSum=-2.056;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:68,294:362:99:5570,540,0 chrII 809468 . G A 85.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.886;DP=189;Dels=0.05;FS=0.000;HaplotypeScore=50.1974;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=12;MQRankSum=0.787;QD=0.45;ReadPosRankSum=-1.555;SB=-7.325e+02 GT:AD:DP:GQ:PL 1/1:1,179:180:12:118,12,0 chrII 809483 . G A 41.07 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;DP=137;Dels=0.00;FS=10.899;HaplotypeScore=66.7550;MLEAC=1;MLEAF=0.500;MQ=33.43;MQ0=11;MQRankSum=-1.648;QD=0.30;ReadPosRankSum=1.422;SB=-1.981e+02 GT:AD:DP:GQ:PL 0/1:9,125:137:15:71,0,15 chrII 809610 . T C 119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260;DP=138;Dels=0.00;FS=18.131;HaplotypeScore=5.5642;MLEAC=1;MLEAF=0.500;MQ=26.38;MQ0=43;MQRankSum=-1.714;QD=0.86;ReadPosRankSum=0.052;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:115,23:138:99:149,0,1465 chrII 809685 . A G 636 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.74;MQ0=17;QD=9.78;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:2,62:65:75:669,75,0 chrII 809691 . T C 710 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=20.74;MQ0=16;QD=9.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:9,65:74:81:743,81,0 chrII 810019 . A C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.05;MQ0=11;QD=0.70;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:6:50,6,0 chrII 810077 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.49;MQ0=20;QD=0.55;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,36:36:6:51,6,0 chrII 810249 . A G 261 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.91;MQ0=1;QD=8.70;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:39:294,39,0 chrII 810330 . G C 109.13 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=11.88;MQ0=15;QD=3.76;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:14,14:29:18:142,18,0 chrII 812969 . G T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.572;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=3.3976;MLEAC=2;MLEAF=1.00;MQ=17.99;MQ0=6;MQRankSum=1.589;QD=1.84;ReadPosRankSum=-0.572;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:7,6:14:6:57,6,0 chrII 812975 . G C 44.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.248;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=6.4201;MLEAC=2;MLEAF=1.00;MQ=18.27;MQ0=5;MQRankSum=2.054;QD=3.21;ReadPosRankSum=0.573;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:8,6:14:9:77,9,0 chrII 812989 . A G 46.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.741;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=19.2740;MLEAC=2;MLEAF=1.00;MQ=23.92;MQ0=0;MQRankSum=0.000;QD=4.70;ReadPosRankSum=1.393;SB=2.16 GT:AD:DP:GQ:PL 1/1:1,9:10:9:79,9,0 chrII 813041 . A G 52.97 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.7554;MLEAC=2;MLEAF=1.00;MQ=17.37;MQ0=10;QD=1.71;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:1,30:31:9:85,9,0 chrII 813081 . G A 28.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=18.24;MQ0=7;QD=1.31;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,22:22:6:60,6,0 chrII 813086 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=16.88;MQ0=7;QD=1.25;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:5,14:19:6:55,6,0 chrIII 39 . A C 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=21.7759;MLEAC=1;MLEAF=0.500;MQ=26.21;MQ0=4;MQRankSum=-1.567;QD=1.17;ReadPosRankSum=1.332;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,5:30:65:65,0,287 chrIII 160 . A C 137.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;DP=179;Dels=0.02;FS=0.000;HaplotypeScore=106.7072;MLEAC=1;MLEAF=0.500;MQ=26.79;MQ0=3;MQRankSum=1.607;QD=0.77;ReadPosRankSum=-3.266;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:144,28:175:99:167,0,1802 chrIII 274 . A C 70.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;DP=118;Dels=0.02;FS=0.000;HaplotypeScore=151.8181;MLEAC=1;MLEAF=0.500;MQ=25.57;MQ0=6;MQRankSum=-1.510;QD=0.59;ReadPosRankSum=-3.547;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,19:116:99:100,0,675 chrIII 278 . C A 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.047;DP=103;Dels=0.04;FS=4.083;HaplotypeScore=166.0989;MLEAC=1;MLEAF=0.500;MQ=25.84;MQ0=6;MQRankSum=1.230;QD=0.18;ReadPosRankSum=2.519;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:81,17:99:48:48,0,628 chrIII 373 . C T 160.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.634;DP=98;Dels=0.00;FS=12.332;HaplotypeScore=83.1521;MLEAC=1;MLEAF=0.500;MQ=25.22;MQ0=0;MQRankSum=1.570;QD=1.63;ReadPosRankSum=2.794;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,46:98:99:190,0,99 chrIII 388 . T A 485.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.319;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=76.6545;MLEAC=1;MLEAF=0.500;MQ=25.53;MQ0=0;MQRankSum=1.831;QD=3.05;ReadPosRankSum=1.127;SB=-6.628e-03 GT:AD:DP:GQ:PL 0/1:55,69:159:43:515,0,43 chrIII 399 . A C 946.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.137;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=191.5898;MLEAC=1;MLEAF=0.500;MQ=26.28;MQ0=0;MQRankSum=2.066;QD=4.40;ReadPosRankSum=1.618;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:103,112:215:99:976,0,230 chrIII 403 . T A 1578 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=220;Dels=0.05;FS=0.000;HaplotypeScore=297.5244;MLEAC=2;MLEAF=1.00;MQ=25.97;MQ0=1;QD=7.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:1611,189,0 chrIII 406 . C A 147.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.778;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=244.3974;MLEAC=1;MLEAF=0.500;MQ=25.42;MQ0=1;MQRankSum=1.859;QD=0.57;ReadPosRankSum=0.075;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:204,54:258:99:177,0,1232 chrIII 413 . C A,T 1635.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.924;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=68.6257;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.34;MQ0=1;MQRankSum=1.128;QD=6.22;ReadPosRankSum=0.998;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:11,54,197:263:99:1695,1359,1314,336,0,162 chrIII 417 . C T 129.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.593;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=91.0468;MLEAC=1;MLEAF=0.500;MQ=25.56;MQ0=2;MQRankSum=1.269;QD=0.43;ReadPosRankSum=-0.052;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:240,59:299:99:159,0,1291 chrIII 422 . T C 2025 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.727;DP=323;Dels=0.00;FS=61.312;HaplotypeScore=79.2240;MLEAC=2;MLEAF=1.00;MQ=25.88;MQ0=2;MQRankSum=-0.066;QD=6.27;ReadPosRankSum=3.737;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:5,318:323:99:2058,240,0 chrIII 440 . T C 2509.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.292;DP=501;Dels=0.05;FS=248.979;HaplotypeScore=376.5305;MLEAC=1;MLEAF=0.500;MQ=26.13;MQ0=3;MQRankSum=0.187;QD=5.01;ReadPosRankSum=-5.134;SB=-2.184e+03 GT:AD:DP:GQ:PL 0/1:220,258:478:99:2539,0,1019 chrIII 442 . C T 774.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.309;DP=524;Dels=0.00;FS=238.825;HaplotypeScore=275.9129;MLEAC=1;MLEAF=0.500;MQ=26.16;MQ0=3;MQRankSum=3.254;QD=1.48;ReadPosRankSum=6.744;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:318,204:522:99:804,0,2711 chrIII 458 . T C 1085.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;DP=688;Dels=0.00;FS=794.602;HaplotypeScore=141.1003;MLEAC=1;MLEAF=0.500;MQ=25.94;MQ0=12;MQRankSum=4.682;QD=1.58;ReadPosRankSum=3.766;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:382,306:688:99:1115,0,4486 chrIII 468 . G A,T 7568.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=749;Dels=0.00;FS=0.000;HaplotypeScore=155.4413;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.95;MQ0=16;QD=10.10;SB=-5.962e+03 GT:AD:DP:GQ:PL 1/2:0,339,410:749:99:7568,5904,5680,1664,0,876 chrIII 544 . C T 3564.01 filter AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.4321;MLEAC=2;MLEAF=1.00;MQ=24.64;MQ0=9;QD=17.64;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:1,198:202:99:3564,422,0 chrIII 550 . G A 2631 filter AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.2846;MLEAC=2;MLEAF=1.00;MQ=24.25;MQ0=8;QD=18.27;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2664,320,0 chrIII 559 . T C 373.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.711;DP=78;Dels=0.00;FS=19.105;HaplotypeScore=15.4853;MLEAC=1;MLEAF=0.500;MQ=21.74;MQ0=5;MQRankSum=-0.840;QD=4.78;ReadPosRankSum=-1.380;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,35:78:99:403,0,448 chrIII 562 . A G 153.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.135;DP=48;Dels=0.00;FS=17.427;HaplotypeScore=14.5119;MLEAC=1;MLEAF=0.500;MQ=21.29;MQ0=3;MQRankSum=-3.318;QD=3.19;ReadPosRankSum=-0.173;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,15:48:99:183,0,386 chrIII 565 . A G 99.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;DP=30;Dels=0.00;FS=1.657;HaplotypeScore=14.5119;MLEAC=1;MLEAF=0.500;MQ=18.94;MQ0=2;MQRankSum=0.934;QD=3.30;ReadPosRankSum=-0.675;SB=-5.901e+01 GT:AD:DP:GQ:PL 0/1:17,12:30:99:129,0,107 chrIII 568 . G A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=21.95;MQ0=1;QD=3.00;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,8:11:9:65,9,0 chrIII 601 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=20.39;MQ0=1;QD=1.56;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:53,6,0 chrIII 632 . C T 609 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.033;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.74;MQ0=1;MQRankSum=-2.668;QD=5.16;ReadPosRankSum=0.591;SB=3.00 GT:AD:DP:GQ:PL 1/1:33,85:118:84:642,84,0 chrIII 633 . T A 610 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.448;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.74;MQ0=1;MQRankSum=-2.402;QD=5.17;ReadPosRankSum=0.603;SB=3.00 GT:AD:DP:GQ:PL 1/1:33,85:118:84:643,84,0 chrIII 656 . C T 1132.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;DP=244;Dels=0.00;FS=4.164;HaplotypeScore=18.6031;MLEAC=1;MLEAF=0.500;MQ=23.94;MQ0=4;MQRankSum=0.804;QD=4.64;ReadPosRankSum=2.204;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,149:244:99:1162,0,708 chrIII 666 . T C 2718 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.819;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=28.3796;MLEAC=2;MLEAF=1.00;MQ=24.23;MQ0=4;MQRankSum=1.282;QD=10.30;ReadPosRankSum=1.174;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:3,261:264:99:2751,324,0 chrIII 679 . A T 588.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.943;DP=304;Dels=0.01;FS=2.643;HaplotypeScore=46.9799;MLEAC=1;MLEAF=0.500;MQ=24.63;MQ0=4;MQRankSum=2.463;QD=1.93;ReadPosRankSum=2.314;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:195,107:302:99:618,0,1412 chrIII 680 . T A 695.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.005;DP=304;Dels=0.01;FS=2.661;HaplotypeScore=54.7671;MLEAC=1;MLEAF=0.500;MQ=24.63;MQ0=4;MQRankSum=0.452;QD=2.29;ReadPosRankSum=2.804;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:193,107:301:99:725,0,1415 chrIII 686 . T C 2745 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.884;DP=311;Dels=0.01;FS=37.043;HaplotypeScore=40.7884;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=5;MQRankSum=1.987;QD=8.83;ReadPosRankSum=2.877;SB=-1.601e+01 GT:AD:DP:GQ:PL 1/1:3,304:308:99:2778,347,0 chrIII 707 . T G 1295.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.888;DP=281;Dels=0.00;FS=55.008;HaplotypeScore=12.8849;MLEAC=1;MLEAF=0.500;MQ=24.69;MQ0=7;MQRankSum=2.424;QD=4.61;ReadPosRankSum=-0.605;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,159:281:99:1325,0,530 chrIII 717 . T A 1697 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.5657;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=6;QD=8.79;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,193:193:99:1730,201,0 chrIII 718 . C T 753.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.018;DP=193;Dels=0.00;FS=42.641;HaplotypeScore=11.5657;MLEAC=1;MLEAF=0.500;MQ=25.25;MQ0=6;MQRankSum=5.828;QD=3.90;ReadPosRankSum=4.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,87:193:99:783,0,558 chrIII 722 . T G 734.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.134;DP=185;Dels=0.00;FS=44.902;HaplotypeScore=25.1933;MLEAC=1;MLEAF=0.500;MQ=25.55;MQ0=5;MQRankSum=4.726;QD=3.97;ReadPosRankSum=3.211;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:98,87:185:99:764,0,557 chrIII 723 . C A 1499 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=25.1933;MLEAC=2;MLEAF=1.00;MQ=26.09;MQ0=3;QD=9.49;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,158:158:99:1532,177,0 chrIII 724 . G T 1491 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=25.1933;MLEAC=2;MLEAF=1.00;MQ=26.09;MQ0=3;QD=9.44;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,158:158:99:1524,177,0 chrIII 726 . T A,G 1280.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.5657;MLEAC=1,1;MLEAF=0.500,0.500;MQ=26.09;MQ0=3;QD=8.10;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/2:0,94,64:158:99:1340,456,342,884,0,821 chrIII 731 . C A 183.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;DP=160;Dels=0.00;FS=16.955;HaplotypeScore=33.8126;MLEAC=1;MLEAF=0.500;MQ=25.99;MQ0=3;MQRankSum=0.212;QD=1.14;ReadPosRankSum=-2.651;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:104,56:160:99:213,0,859 chrIII 732 . G C 768.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.973;DP=160;Dels=0.00;FS=57.687;HaplotypeScore=34.7860;MLEAC=1;MLEAF=0.500;MQ=25.99;MQ0=3;MQRankSum=3.843;QD=4.80;ReadPosRankSum=0.175;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,88:160:99:798,0,211 chrIII 739 . G A 457.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.361;DP=131;Dels=0.00;FS=5.924;HaplotypeScore=58.1076;MLEAC=1;MLEAF=0.500;MQ=25.63;MQ0=3;MQRankSum=1.356;QD=3.49;ReadPosRankSum=0.672;SB=-8.801e+01 GT:AD:DP:GQ:PL 0/1:51,80:131:99:487,0,123 chrIII 776 . T C 81.26 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=18.88;MQ0=2;QD=5.08;SB=-1.302e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:15:114,15,0 chrIII 780 . T C 63.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.520;DP=13;Dels=0.00;FS=18.195;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=18.15;MQ0=2;MQRankSum=0.000;QD=4.89;ReadPosRankSum=0.896;SB=-7.256e+00 GT:AD:DP:GQ:PL 1/1:4,9:13:12:96,12,0 chrIII 892 . C G 140.03 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.54;MQ0=5;QD=7.78;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,17:18:24:173,24,0 chrIII 927 . C T 89.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.155;DP=31;Dels=0.00;FS=6.107;HaplotypeScore=5.9705;MLEAC=1;MLEAF=0.500;MQ=12.83;MQ0=12;MQRankSum=-0.127;QD=2.87;ReadPosRankSum=3.507;SB=-6.528e-03 GT:AD:DP:GQ:PL 0/1:15,16:31:54:119,0,54 chrIII 930 . C T 89.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=30;Dels=0.00;FS=6.107;HaplotypeScore=5.9705;MLEAC=1;MLEAF=0.500;MQ=12.75;MQ0=12;MQRankSum=-0.453;QD=2.97;ReadPosRankSum=3.442;SB=-6.528e-03 GT:AD:DP:GQ:PL 0/1:13,17:30:54:119,0,54 chrIII 931 . A C,T 145.02 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.542;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=1,1;MLEAF=0.500,0.500;MQ=12.75;MQ0=12;MQRankSum=1.156;QD=4.83;ReadPosRankSum=1.542;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/2:1,12,17:30:54:205,131,119,75,0,54 chrIII 951 . C T 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DP=28;Dels=0.00;FS=3.310;HaplotypeScore=3.0724;MLEAC=1;MLEAF=0.500;MQ=12.39;MQ0=12;MQRankSum=-1.418;QD=0.86;ReadPosRankSum=1.628;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,10:28:54:54,0,119 chrIII 952 . C T 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.356;DP=28;Dels=0.00;FS=3.010;HaplotypeScore=3.0724;MLEAC=1;MLEAF=0.500;MQ=12.39;MQ0=12;MQRankSum=0.380;QD=0.86;ReadPosRankSum=3.200;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,8:28:54:54,0,119 chrIII 987 . A G 32.97 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=10.16;MQ0=9;QD=2.36;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:8,6:14:9:65,9,0 chrIII 1071 . C T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.75;MQ0=5;QD=1.53;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:6:48,6,0 chrIII 1243 . C T 707 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.937;DP=62;Dels=0.03;FS=0.000;HaplotypeScore=36.7273;MLEAC=2;MLEAF=1.00;MQ=17.12;MQ0=12;MQRankSum=1.576;QD=11.40;ReadPosRankSum=0.554;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:6,54:60:98:740,98,0 chrIII 1250 . G A 707 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.045;DP=67;Dels=0.03;FS=0.000;HaplotypeScore=26.8844;MLEAC=2;MLEAF=1.00;MQ=17.86;MQ0=12;MQRankSum=-0.358;QD=10.55;ReadPosRankSum=2.678;SB=-1.319e+02 GT:AD:DP:GQ:PL 1/1:9,55:65:98:740,98,0 chrIII 1264 . G A 833 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=19.33;MQ0=12;QD=10.96;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:866,113,0 chrIII 1290 . C A 179.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.974;DP=64;Dels=0.00;FS=6.103;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.25;MQ0=11;MQRankSum=-5.137;QD=2.80;ReadPosRankSum=2.863;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,24:64:99:209,0,204 chrIII 1304 . A G 315.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.676;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.9559;MLEAC=1;MLEAF=0.500;MQ=25.73;MQ0=6;MQRankSum=4.821;QD=4.38;ReadPosRankSum=0.532;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,53:72:99:345,0,215 chrIII 1308 . T C 330.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=13.2098;MLEAC=1;MLEAF=0.500;MQ=26.85;MQ0=2;MQRankSum=3.701;QD=4.18;ReadPosRankSum=2.478;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,60:78:99:360,0,190 chrIII 1310 . C T 714 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.6547;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=2;QD=9.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:90:747,90,0 chrIII 1322 . A G 668.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.069;DP=98;Dels=0.00;FS=12.878;HaplotypeScore=4.4047;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=1;MQRankSum=3.467;QD=6.82;ReadPosRankSum=1.558;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:6,92:98:24:701,24,0 chrIII 1324 . G A 875 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.4047;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=9.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:908,105,0 chrIII 1331 . G T 707.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.595;DP=115;Dels=0.00;FS=14.586;HaplotypeScore=2.7059;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;MQRankSum=3.244;QD=6.15;ReadPosRankSum=1.870;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:4,111:115:27:740,27,0 chrIII 1334 . A C 704.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.813;DP=125;Dels=0.00;FS=14.949;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;MQRankSum=3.275;QD=5.63;ReadPosRankSum=1.760;SB=-1.744e-02 GT:AD:DP:GQ:PL 1/1:4,121:125:29:737,29,0 chrIII 1345 . A C 1173 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.277;DP=170;Dels=0.00;FS=49.055;HaplotypeScore=1.8938;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;MQRankSum=2.887;QD=6.90;ReadPosRankSum=2.130;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,165:170:99:1206,109,0 chrIII 1358 . G A 1570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.973;DP=187;Dels=0.00;FS=14.937;HaplotypeScore=178.6792;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;MQRankSum=1.658;QD=8.40;ReadPosRankSum=1.417;SB=-3.401e+01 GT:AD:DP:GQ:PL 1/1:1,186:187:99:1603,189,0 chrIII 1361 . A G 1380 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.063;DP=194;Dels=0.00;FS=113.456;HaplotypeScore=184.4851;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;MQRankSum=4.311;QD=7.11;ReadPosRankSum=2.381;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,186:194:99:1413,129,0 chrIII 1371 . G T 1564 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.928;DP=227;Dels=0.00;FS=163.161;HaplotypeScore=3.8810;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;MQRankSum=5.368;QD=6.89;ReadPosRankSum=2.746;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:11,216:227:99:1597,133,0 chrIII 1397 . C A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=10.7646;MLEAC=2;MLEAF=1.00;MQ=38.02;MQ0=0;QD=11.28;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,292:292:99:3294,381,0 chrIII 1533 . G T 4171.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=37.24;MQ0=0;QD=15.06;SB=-3.053e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:4171,465,0 chrIII 1680 . G A 8873.01 filter AC=2;AF=1.00;AN=2;DP=400;Dels=0.00;FS=0.000;HaplotypeScore=13.5521;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;QD=22.18;SB=-4.162e+03 GT:AD:DP:GQ:PL 1/1:0,400:400:99:8873,1034,0 chrIII 1752 . C T 6107.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=12.8003;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.50;SB=-3.224e+03 GT:AD:DP:GQ:PL 1/1:0,283:284:99:6107,699,0 chrIII 1857 . T C 6049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.962;DP=352;Dels=0.00;FS=14.198;HaplotypeScore=36.2529;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=1.956;QD=17.18;ReadPosRankSum=4.109;SB=-3.682e+03 GT:AD:DP:GQ:PL 1/1:6,344:351:99:6049,702,0 chrIII 2042 . T G 7158.01 filter AC=2;AF=1.00;AN=2;DP=363;Dels=0.00;FS=0.000;HaplotypeScore=15.3548;MLEAC=2;MLEAF=1.00;MQ=44.99;MQ0=0;QD=19.72;SB=-4.008e+03 GT:AD:DP:GQ:PL 1/1:0,363:363:99:7158,825,0 chrIII 2077 . C A 5579.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=38.78;MQ0=0;QD=16.70;SB=-3.658e+03 GT:AD:DP:GQ:PL 1/1:0,334:334:99:5579,642,0 chrIII 2080 . T C 5101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=329;Dels=0.00;FS=3.592;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.01;MQ0=0;MQRankSum=1.287;QD=15.50;ReadPosRankSum=1.721;SB=-3.408e+03 GT:AD:DP:GQ:PL 1/1:1,326:329:99:5101,634,0 chrIII 2098 . G A 4648.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=33.84;MQ0=0;QD=14.30;SB=-3.607e+03 GT:AD:DP:GQ:PL 1/1:0,325:325:99:4648,537,0 chrIII 2101 . A G 4438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=33.06;MQ0=0;MQRankSum=-0.549;QD=13.41;ReadPosRankSum=1.722;SB=-3.505e+03 GT:AD:DP:GQ:PL 1/1:1,330:331:99:4438,524,0 chrIII 2139 . A G 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=305;Dels=0.00;FS=6.718;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;MQRankSum=-0.607;QD=9.90;ReadPosRankSum=2.433;SB=-3.639e+03 GT:AD:DP:GQ:PL 1/1:2,303:305:99:3054,351,0 chrIII 2156 . A T 3146 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=2.8627;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=0;QD=9.83;SB=-4.015e+03 GT:AD:DP:GQ:PL 1/1:0,320:320:99:3179,363,0 chrIII 2177 . A G 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=314;Dels=0.00;FS=6.432;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;MQRankSum=-0.340;QD=9.61;ReadPosRankSum=2.434;SB=-3.722e+03 GT:AD:DP:GQ:PL 1/1:2,312:314:99:3052,357,0 chrIII 2179 . A G 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.434;DP=314;Dels=0.00;FS=6.432;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;MQRankSum=0.160;QD=9.65;ReadPosRankSum=2.434;SB=-3.759e+03 GT:AD:DP:GQ:PL 1/1:2,312:314:99:3063,354,0 chrIII 2198 . C A 3128 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=10.82;SB=-3.668e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:3161,360,0 chrIII 2213 . T C 3417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.690;DP=307;Dels=0.00;FS=12.155;HaplotypeScore=2.7902;MLEAC=2;MLEAF=1.00;MQ=36.25;MQ0=0;MQRankSum=-3.027;QD=11.13;ReadPosRankSum=3.756;SB=-3.595e+03 GT:AD:DP:GQ:PL 1/1:5,301:307:99:3417,396,0 chrIII 2227 . A G 4448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=312;Dels=0.00;FS=6.525;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;MQRankSum=0.951;QD=14.26;ReadPosRankSum=2.434;SB=-3.472e+03 GT:AD:DP:GQ:PL 1/1:2,309:312:99:4448,522,0 chrIII 2254 . C T 5768.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=8.8867;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=17.43;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:0,330:331:99:5768,660,0 chrIII 2308 . G T 7713.01 filter AC=2;AF=1.00;AN=2;DP=402;Dels=0.00;FS=0.000;HaplotypeScore=8.2675;MLEAC=2;MLEAF=1.00;MQ=40.26;MQ0=0;QD=19.19;SB=-3.867e+03 GT:AD:DP:GQ:PL 1/1:0,401:401:99:7713,908,0 chrIII 2314 . G A 7000.01 filter AC=2;AF=1.00;AN=2;DP=388;Dels=0.00;FS=0.000;HaplotypeScore=3.5355;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=18.04;SB=-3.734e+03 GT:AD:DP:GQ:PL 1/1:1,385:388:99:7000,818,0 chrIII 2326 . A T 6982.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=386;Dels=0.00;FS=11.039;HaplotypeScore=7.3151;MLEAC=2;MLEAF=1.00;MQ=39.37;MQ0=0;MQRankSum=-0.306;QD=18.09;ReadPosRankSum=2.935;SB=-3.973e+03 GT:AD:DP:GQ:PL 1/1:3,383:386:99:6982,827,0 chrIII 2362 . G T 7291.01 filter AC=2;AF=1.00;AN=2;DP=420;Dels=0.00;FS=0.000;HaplotypeScore=31.9964;MLEAC=2;MLEAF=1.00;MQ=43.74;MQ0=0;QD=17.36;SB=-3.738e+03 GT:AD:DP:GQ:PL 1/1:0,416:420:99:7291,860,0 chrIII 2410 . T G 8649.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=445;Dels=0.00;FS=0.000;HaplotypeScore=16.4594;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;MQRankSum=0.090;QD=19.44;ReadPosRankSum=1.693;SB=-3.798e+03 GT:AD:DP:GQ:PL 1/1:1,440:445:99:8649,1010,0 chrIII 2422 . T G 7896.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=422;Dels=0.00;FS=5.225;HaplotypeScore=5.9550;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;MQRankSum=0.163;QD=18.71;ReadPosRankSum=2.907;SB=-3.608e+03 GT:AD:DP:GQ:PL 1/1:3,415:422:99:7896,926,0 chrIII 2449 . C G 8423.01 filter AC=2;AF=1.00;AN=2;DP=446;Dels=0.00;FS=0.000;HaplotypeScore=15.2663;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=18.89;SB=-5.269e+03 GT:AD:DP:GQ:PL 1/1:0,441:446:99:8423,1004,0 chrIII 2478 . T C 6903.01 filter AC=2;AF=1.00;AN=2;DP=410;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=16.84;SB=-4.391e+03 GT:AD:DP:GQ:PL 1/1:0,405:410:99:6903,835,0 chrIII 2493 . T C 7095.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.058;DP=407;Dels=0.00;FS=22.211;HaplotypeScore=26.0587;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;MQRankSum=-1.646;QD=17.43;ReadPosRankSum=4.193;SB=-3.999e+03 GT:AD:DP:GQ:PL 1/1:6,394:407:99:7095,827,0 chrIII 2533 . T C 7537.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.959;DP=422;Dels=0.00;FS=30.651;HaplotypeScore=26.0507;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=-2.547;QD=17.86;ReadPosRankSum=5.018;SB=-4.485e+03 GT:AD:DP:GQ:PL 1/1:9,409:422:99:7537,875,0 chrIII 2554 . G A 7586.01 filter AC=2;AF=1.00;AN=2;DP=428;Dels=0.00;FS=0.000;HaplotypeScore=4.2847;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=17.72;SB=-4.870e+03 GT:AD:DP:GQ:PL 1/1:0,426:428:99:7586,878,0 chrIII 2566 . A G 8486.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=457;Dels=0.00;FS=2.951;HaplotypeScore=5.9213;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=1.389;QD=18.57;ReadPosRankSum=2.314;SB=-5.088e+03 GT:AD:DP:GQ:PL 1/1:2,451:457:99:8486,989,0 chrIII 2705 . A G 7474.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=369;Dels=0.00;FS=0.000;HaplotypeScore=13.6997;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=1.562;QD=20.25;ReadPosRankSum=1.666;SB=-3.937e+03 GT:AD:DP:GQ:PL 1/1:1,366:369:99:7474,907,0 chrIII 2730 . T C 6801.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=402;Dels=0.00;FS=0.000;HaplotypeScore=6.6617;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=0.386;QD=16.92;ReadPosRankSum=1.689;SB=-4.449e+03 GT:AD:DP:GQ:PL 1/1:1,398:402:99:6801,827,0 chrIII 2739 . G A 7632.01 filter AC=2;AF=1.00;AN=2;DP=430;Dels=0.00;FS=0.000;HaplotypeScore=14.7041;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=17.75;SB=-4.937e+03 GT:AD:DP:GQ:PL 1/1:0,428:430:99:7632,861,0 chrIII 2801 . G A 8266.01 filter AC=2;AF=1.00;AN=2;DP=408;Dels=0.00;FS=0.000;HaplotypeScore=19.1217;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=20.26;SB=-4.626e+03 GT:AD:DP:GQ:PL 1/1:0,406:408:99:8266,945,0 chrIII 2869 . A G 8174.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.943;DP=383;Dels=0.00;FS=21.965;HaplotypeScore=23.4863;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-2.823;QD=21.34;ReadPosRankSum=4.168;SB=-3.893e+03 GT:AD:DP:GQ:PL 1/1:6,376:383:99:8174,930,0 chrIII 3046 . C T 8890.01 filter AC=2;AF=1.00;AN=2;DP=421;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=21.12;SB=-4.845e+03 GT:AD:DP:GQ:PL 1/1:0,420:421:99:8890,1011,0 chrIII 3050 . C T 8997.01 filter AC=2;AF=1.00;AN=2;DP=418;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=21.52;SB=-4.790e+03 GT:AD:DP:GQ:PL 1/1:0,416:418:99:8997,1011,0 chrIII 3079 . G T 9578.01 filter AC=2;AF=1.00;AN=2;DP=443;Dels=0.00;FS=0.000;HaplotypeScore=21.6272;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=21.62;SB=-5.243e+03 GT:AD:DP:GQ:PL 1/1:0,443:443:99:9578,1086,0 chrIII 3199 . C A 7544.01 filter AC=2;AF=1.00;AN=2;DP=383;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=19.70;SB=-4.230e+03 GT:AD:DP:GQ:PL 1/1:0,383:383:99:7544,890,0 chrIII 3241 . C T 6465.01 filter AC=2;AF=1.00;AN=2;DP=418;Dels=0.00;FS=0.000;HaplotypeScore=6.5718;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=15.47;SB=-5.110e+03 GT:AD:DP:GQ:PL 1/1:0,417:418:99:6465,747,0 chrIII 3274 . A G 4762.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=399;Dels=0.00;FS=2.351;HaplotypeScore=12.5402;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=0;MQRankSum=-2.640;QD=11.93;ReadPosRankSum=2.272;SB=-4.259e+03 GT:AD:DP:GQ:PL 1/1:3,395:399:99:4762,549,0 chrIII 3279 . A T 4364.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=371;Dels=0.00;FS=0.000;HaplotypeScore=4.4487;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=11.76;SB=-3.991e+03 GT:AD:DP:GQ:PL 1/1:0,371:371:99:4364,504,0 chrIII 3280 . A G 4201.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.839;DP=370;Dels=0.00;FS=18.637;HaplotypeScore=3.5156;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;MQRankSum=-3.823;QD=11.35;ReadPosRankSum=3.831;SB=-3.808e+03 GT:AD:DP:GQ:PL 1/1:5,365:370:99:4201,497,0 chrIII 3287 . C T 3996.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=394;Dels=0.00;FS=0.000;HaplotypeScore=3.6293;MLEAC=2;MLEAF=1.00;MQ=29.36;MQ0=0;QD=10.14;SB=-3.847e+03 GT:AD:DP:GQ:PL 1/1:0,394:394:99:3996,465,0 chrIII 3290 . T G 4174.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=399;Dels=0.00;FS=0.000;HaplotypeScore=5.1816;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=0;MQRankSum=-1.680;QD=10.46;ReadPosRankSum=1.697;SB=-4.032e+03 GT:AD:DP:GQ:PL 1/1:1,398:399:99:4174,491,0 chrIII 3316 . A G 4718.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=395;Dels=0.00;FS=3.754;HaplotypeScore=11.3411;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;MQRankSum=0.360;QD=11.94;ReadPosRankSum=1.723;SB=-3.921e+03 GT:AD:DP:GQ:PL 1/1:1,393:395:99:4718,575,0 chrIII 3357 . A G 6912.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=422;Dels=0.00;FS=6.433;HaplotypeScore=5.7979;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;MQRankSum=0.766;QD=16.38;ReadPosRankSum=2.438;SB=-5.140e+03 GT:AD:DP:GQ:PL 1/1:2,419:422:99:6912,786,0 chrIII 3393 . T C 7588.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.450;DP=414;Dels=0.00;FS=18.049;HaplotypeScore=21.5370;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=-1.123;QD=18.33;ReadPosRankSum=4.505;SB=-4.946e+03 GT:AD:DP:GQ:PL 1/1:7,406:414:99:7588,881,0 chrIII 3420 . G T 6442.01 filter AC=2;AF=1.00;AN=2;DP=403;Dels=0.00;FS=0.000;HaplotypeScore=3.6040;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=15.99;SB=-4.703e+03 GT:AD:DP:GQ:PL 1/1:0,402:403:99:6442,755,0 chrIII 3423 . C A 6583.01 filter AC=2;AF=1.00;AN=2;DP=416;Dels=0.00;FS=0.000;HaplotypeScore=4.7759;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=15.82;SB=-4.853e+03 GT:AD:DP:GQ:PL 1/1:0,412:416:99:6583,770,0 chrIII 3437 . T A 6907.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.724;DP=426;Dels=0.00;FS=0.000;HaplotypeScore=23.5232;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;MQRankSum=-0.409;QD=16.21;ReadPosRankSum=1.682;SB=-4.563e+03 GT:AD:DP:GQ:PL 1/1:1,424:426:99:6907,794,0 chrIII 3488 . C T 10207.01 filter AC=2;AF=1.00;AN=2;DP=519;Dels=0.00;FS=0.000;HaplotypeScore=37.5558;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=19.67;SB=-5.878e+03 GT:AD:DP:GQ:PL 1/1:0,517:519:99:10207,1175,0 chrIII 3567 . A G 10246.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.020;DP=475;Dels=0.00;FS=20.347;HaplotypeScore=22.8959;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=3.485;QD=21.57;ReadPosRankSum=4.071;SB=-5.019e+03 GT:AD:DP:GQ:PL 1/1:6,468:475:99:10246,1187,0 chrIII 3597 . T A 9311.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=426;Dels=0.00;FS=0.000;HaplotypeScore=20.3640;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.944;QD=21.86;ReadPosRankSum=1.675;SB=-5.110e+03 GT:AD:DP:GQ:PL 1/1:1,424:426:99:9311,1062,0 chrIII 3669 . G A 9115.01 filter AC=2;AF=1.00;AN=2;DP=454;Dels=0.00;FS=0.000;HaplotypeScore=21.6813;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=20.08;SB=-3.944e+03 GT:AD:DP:GQ:PL 1/1:0,453:454:99:9115,1041,0 chrIII 3765 . G T 8342.01 filter AC=2;AF=1.00;AN=2;DP=395;Dels=0.00;FS=0.000;HaplotypeScore=25.3914;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.12;SB=-3.569e+03 GT:AD:DP:GQ:PL 1/1:0,393:395:99:8342,951,0 chrIII 3799 . A G 8463.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.763;DP=387;Dels=0.00;FS=16.225;HaplotypeScore=18.6811;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-4.012;QD=21.87;ReadPosRankSum=4.830;SB=-3.992e+03 GT:AD:DP:GQ:PL 1/1:8,376:387:99:8463,975,0 chrIII 3844 . C T 7998.01 filter AC=2;AF=1.00;AN=2;DP=371;Dels=0.00;FS=0.000;HaplotypeScore=15.9724;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=21.56;SB=-4.563e+03 GT:AD:DP:GQ:PL 1/1:0,367:371:99:7998,903,0 chrIII 3860 . G A 7546.01 PASS AC=2;AF=1.00;AN=2;DP=342;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=22.06;SB=-4.205e+03 GT:AD:DP:GQ:PL 1/1:0,342:342:99:7546,872,0 chrIII 3880 . A G 6960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.769;DP=314;Dels=0.00;FS=12.106;HaplotypeScore=8.2112;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;MQRankSum=-1.088;QD=22.17;ReadPosRankSum=3.779;SB=-3.916e+03 GT:AD:DP:GQ:PL 1/1:5,308:314:99:6960,792,0 chrIII 3939 . C T 4798.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=21.04;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4798,552,0 chrIII 3941 . C T 4779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.870;DP=227;Dels=0.00;FS=4.384;HaplotypeScore=2.7881;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;MQRankSum=0.239;QD=21.05;ReadPosRankSum=-1.178;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:4779,526,0 chrIII 4035 . A C 5403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=40.35;MQ0=0;MQRankSum=-1.188;QD=21.53;ReadPosRankSum=2.410;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:2,249:251:99:5403,630,0 chrIII 4072 . A G 3477.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.982;DP=214;Dels=0.00;FS=2.232;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=32.16;MQ0=0;MQRankSum=-3.855;QD=16.25;ReadPosRankSum=3.969;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:6,208:214:99:3477,411,0 chrIII 4077 . A G 3025 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.339;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=29.25;MQ0=0;MQRankSum=-3.367;QD=16.09;ReadPosRankSum=3.255;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:4,184:188:99:3058,365,0 chrIII 4080 . T A 2254 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=0;QD=17.08;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2287,261,0 chrIII 4081 . G C 2225 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.59;MQ0=0;QD=16.98;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2258,261,0 chrIII 4083 . G A 2217 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=17.19;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2250,261,0 chrIII 4084 . G A 2203 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=17.08;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2236,261,0 chrIII 4090 . T A 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=127.6031;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;QD=0.27;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,158:158:9:74,9,0 chrIII 4093 . T A 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=127.6031;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;QD=0.30;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:9:80,9,0 chrIII 4112 . C T 1813 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=12.95;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1846,213,0 chrIII 4122 . G A 1627 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;QD=12.91;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1660,189,0 chrIII 4129 . A T 1265 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;MQRankSum=-0.295;QD=13.18;ReadPosRankSum=2.927;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:3,93:96:99:1298,153,0 chrIII 4130 . G A 1318 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;QD=14.17;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1351,156,0 chrIII 4133 . G T 1222 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;QD=13.14;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1255,147,0 chrIII 4134 . T A 1330 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;QD=14.30;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1363,156,0 chrIII 4150 . G C 1147 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=12.47;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1180,138,0 chrIII 4155 . A G 1025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;MQRankSum=0.808;QD=11.39;ReadPosRankSum=1.694;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1058,120,0 chrIII 4161 . C A 966 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.64;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:999,114,0 chrIII 4171 . T C 1295 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.23;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1328,153,0 chrIII 4178 . G C 1464 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=16.27;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1497,171,0 chrIII 4184 . A C 1296 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=15.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1329,165,0 chrIII 4186 . G A 1459 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=16.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1492,165,0 chrIII 4197 . G T 1260 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=14.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1293,153,0 chrIII 4238 . C T 890 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=12.03;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:923,105,0 chrIII 4241 . A T 840 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=0;MQRankSum=-1.050;QD=12.73;ReadPosRankSum=1.680;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:873,99,0 chrIII 4242 . C T 837 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.24;MQ0=0;QD=12.49;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:870,99,0 chrIII 4243 . A T 825 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=0;QD=11.79;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:858,99,0 chrIII 4245 . T C 817 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.335;DP=74;Dels=0.00;FS=25.752;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.38;MQ0=0;MQRankSum=-2.498;QD=11.04;ReadPosRankSum=3.335;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:4,70:74:99:850,99,0 chrIII 4262 . A G 1118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.006;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=32.16;MQ0=0;MQRankSum=-0.681;QD=11.18;ReadPosRankSum=4.051;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:9,91:100:99:1151,135,0 chrIII 4264 . G C 1105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.791;DP=99;Dels=0.00;FS=15.183;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;MQRankSum=-2.515;QD=11.16;ReadPosRankSum=3.849;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:6,93:99:99:1138,135,0 chrIII 4351 . T G 1861 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;MQRankSum=0.385;QD=17.07;ReadPosRankSum=1.636;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:1894,233,0 chrIII 4354 . A T 1987 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=20.128;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;MQRankSum=0.992;QD=19.29;ReadPosRankSum=1.698;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2020,228,0 chrIII 4360 . G T 1771 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=18.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1804,210,0 chrIII 4371 . T C 1191 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=15.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1224,147,0 chrIII 4388 . C T 344 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.94;MQ0=0;QD=9.83;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:42:377,42,0 chrIII 4395 . G A 197.01 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=7.04;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:27:230,27,0 chrIII 4404 . G C 72.51 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=4.83;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:105,12,0 chrIII 4426 . C T 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;QD=5.87;SB=-5.472e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:79,9,0 chrIII 4429 . T C 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=8.06;SB=-7.726e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:105,12,0 chrIII 4432 . G T 77.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=8.61;SB=-8.026e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:110,12,0 chrIII 4436 . C T 245 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.20;MQ0=0;QD=14.41;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:36:278,36,0 chrIII 4440 . T C 409 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=17.04;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:57:442,57,0 chrIII 4476 . G C 1725 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=4;QD=18.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1758,210,0 chrIII 4489 . T C 2286 filter AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=4;QD=19.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2319,264,0 chrIII 4490 . T C 2431 filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=4;QD=19.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2464,285,0 chrIII 4576 . T C 1026 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=39.36;MQ0=1;QD=16.03;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1059,123,0 chrIII 4586 . A G 467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=1;MQRankSum=-0.873;QD=11.39;ReadPosRankSum=2.824;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:3,38:41:60:500,60,0 chrIII 4593 . A G 286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.105;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.06;MQ0=1;MQRankSum=-2.355;QD=10.21;ReadPosRankSum=3.105;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:4,24:28:39:319,39,0 chrIII 4768 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.81;MQ0=15;QD=1.27;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:6:54,6,0 chrIII 4842 . G A 313 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=14.50;MQ0=32;QD=3.26;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,94:96:39:346,39,0 chrIII 4925 . T C 488 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.43;MQ0=1;QD=4.83;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,101:101:63:521,63,0 chrIII 4951 . T C 359 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.53;MQ0=1;MQRankSum=-1.359;QD=5.44;ReadPosRankSum=1.466;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:1,65:66:51:392,51,0 chrIII 4955 . T A 406 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.28;MQ0=1;MQRankSum=-0.061;QD=6.55;ReadPosRankSum=2.369;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:2,60:62:51:439,51,0 chrIII 4986 . G A 320 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.78;MQ0=1;QD=5.25;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:42:353,42,0 chrIII 4991 . A G 204 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.64;MQ0=0;QD=3.52;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,58:58:30:237,30,0 chrIII 4999 . T C 250 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.50;MQ0=1;QD=3.62;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,69:69:33:283,33,0 chrIII 5000 . T G 228 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.72;MQ0=1;MQRankSum=-1.732;QD=3.26;ReadPosRankSum=1.682;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:1,69:70:33:261,33,0 chrIII 5012 . G T 543 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.84;MQ0=2;QD=4.85;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:66:576,66,0 chrIII 5018 . T C 553 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.16;MQ0=3;QD=4.29;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:66:586,66,0 chrIII 5037 . A G 833 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.26;MQ0=3;QD=4.71;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,177:177:99:866,102,0 chrIII 5087 . C T 600 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=17.83;MQ0=1;QD=2.67;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,224:225:75:633,75,0 chrIII 5104 . C T 363 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.6778;MLEAC=2;MLEAF=1.00;MQ=16.92;MQ0=0;QD=1.95;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,184:186:45:396,45,0 chrIII 5106 . C T 311 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.8891;MLEAC=2;MLEAF=1.00;MQ=16.93;MQ0=0;QD=1.68;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,185:185:39:344,39,0 chrIII 5116 . A G 119.13 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=109.4615;MLEAC=2;MLEAF=1.00;MQ=16.08;MQ0=0;QD=0.80;SB=-7.312e+01 GT:AD:DP:GQ:PL 1/1:0,149:149:18:152,18,0 chrIII 5117 . A T 87.26 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=109.4615;MLEAC=2;MLEAF=1.00;MQ=15.98;MQ0=1;QD=0.59;SB=-5.226e+01 GT:AD:DP:GQ:PL 1/1:0,148:149:15:120,15,0 chrIII 5127 . G C 147.06 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.03;MQ0=7;QD=1.14;SB=-2.707e+01 GT:AD:DP:GQ:PL 1/1:0,129:129:21:180,21,0 chrIII 5140 . T G 169.03 filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.80;MQ0=16;QD=1.39;SB=-2.404e+01 GT:AD:DP:GQ:PL 1/1:0,122:122:24:202,24,0 chrIII 5266 . C T 3217.04 filter AC=2;AF=1.00;AN=2;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=20.5271;MLEAC=2;MLEAF=1.00;MQ=27.22;MQ0=2;QD=8.89;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,358:362:99:3250,369,0 chrIII 5332 . G A 704.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.3734;MLEAC=1;MLEAF=0.500;MQ=26.11;MQ0=58;MQRankSum=-1.061;QD=3.32;ReadPosRankSum=-2.254;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:119,93:212:99:734,0,1086 chrIII 5397 . T C 349 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.06;MQ0=18;QD=6.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:56:45:382,45,0 chrIII 5433 . T C 90.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.326;DP=165;Dels=0.00;FS=2.329;HaplotypeScore=276.5019;MLEAC=2;MLEAF=1.00;MQ=25.66;MQ0=1;MQRankSum=1.002;QD=0.55;ReadPosRankSum=-6.787;SB=-7.263e+00 GT:AD:DP:GQ:PL 1/1:146,19:165:15:123,15,0 chrIII 5439 . T C 646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=189;Dels=0.00;FS=21.565;HaplotypeScore=279.8055;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=2;MQRankSum=-2.106;QD=3.42;ReadPosRankSum=2.410;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:2,187:189:75:679,75,0 chrIII 5464 . G T 2245 filter AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=37.52;MQ0=6;QD=9.47;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,237:237:99:2278,255,0 chrIII 5517 . A G 1388.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.378;DP=262;Dels=0.00;FS=7.435;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=44.92;MQ0=27;MQRankSum=-0.534;QD=5.30;ReadPosRankSum=1.246;SB=-6.750e+02 GT:AD:DP:GQ:PL 0/1:147,113:262:99:1418,0,2379 chrIII 5520 . A C 5020.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=255;Dels=0.00;FS=3.922;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=27;MQRankSum=1.442;QD=19.69;ReadPosRankSum=1.717;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:1,253:255:99:5020,576,0 chrIII 5660 . A G 470.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.496;DP=85;Dels=0.00;FS=12.160;HaplotypeScore=7.2470;MLEAC=1;MLEAF=0.500;MQ=43.80;MQ0=7;MQRankSum=2.300;QD=5.53;ReadPosRankSum=0.522;SB=-1.580e+02 GT:AD:DP:GQ:PL 0/1:49,35:85:99:500,0,667 chrIII 5678 . T C 3180 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.651;DP=163;Dels=0.00;FS=15.776;HaplotypeScore=14.1661;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=8;MQRankSum=0.927;QD=19.51;ReadPosRankSum=3.661;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:5,158:163:99:3213,369,0 chrIII 5730 . G A 2395.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.408;DP=319;Dels=0.00;FS=8.970;HaplotypeScore=19.8470;MLEAC=1;MLEAF=0.500;MQ=42.20;MQ0=27;MQRankSum=1.327;QD=7.51;ReadPosRankSum=0.359;SB=-1.351e+03 GT:AD:DP:GQ:PL 0/1:167,151:319:99:2425,0,2488 chrIII 5828 . T C 1731 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=26.19;MQ0=20;MQRankSum=-1.183;QD=18.41;ReadPosRankSum=2.383;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:3,91:94:99:1764,201,0 chrIII 5853 . A G 1362.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.971;DP=147;Dels=0.00;FS=5.484;HaplotypeScore=15.9862;MLEAC=1;MLEAF=0.500;MQ=29.84;MQ0=10;MQRankSum=-1.537;QD=9.27;ReadPosRankSum=-0.210;SB=-2.160e+02 GT:AD:DP:GQ:PL 0/1:67,78:147:99:1392,0,1208 chrIII 5904 . C T 6208.01 filter AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=31.62;MQ0=8;QD=23.60;SB=-3.267e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:6208,678,0 chrIII 5975 . A G 2031 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.9110;MLEAC=2;MLEAF=1.00;MQ=29.46;MQ0=10;MQRankSum=0.398;QD=15.27;ReadPosRankSum=1.675;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2064,240,0 chrIII 5985 . A G 1113 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=10;MQRankSum=-1.465;QD=13.57;ReadPosRankSum=2.846;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1146,132,0 chrIII 6001 . T C 1452 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=4;QD=18.38;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1485,171,0 chrIII 6009 . C T 1470 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=5;QD=18.15;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1503,168,0 chrIII 6050 . G C 3568.01 filter AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=31.10;MQ0=6;QD=20.62;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3568,414,0 chrIII 6085 . C T 4221.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.381;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=24.5741;MLEAC=2;MLEAF=1.00;MQ=32.02;MQ0=16;MQRankSum=0.050;QD=15.99;ReadPosRankSum=1.028;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,259:264:99:4221,483,0 chrIII 6093 . T C 4232.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=2.7902;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=26;MQRankSum=0.583;QD=17.49;ReadPosRankSum=1.716;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:3,237:242:99:4232,492,0 chrIII 6190 . C T 90.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.348;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.21;MQ0=4;MQRankSum=0.348;QD=6.45;ReadPosRankSum=-1.044;SB=3.27 GT:AD:DP:GQ:PL 1/1:1,13:14:15:123,15,0 chrIII 6221 . G A 147.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.62;MQ0=4;MQRankSum=0.217;QD=7.35;ReadPosRankSum=1.519;SB=0.061 GT:AD:DP:GQ:PL 1/1:1,19:20:21:180,21,0 chrIII 6226 . G T 149.08 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.16;MQ0=4;QD=6.78;SB=1.91 GT:AD:DP:GQ:PL 1/1:0,19:22:21:182,21,0 chrIII 6234 . C T 66.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.157;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.66;MQ0=4;MQRankSum=0.705;QD=1.94;ReadPosRankSum=-4.687;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,15:34:96:96,0,134 chrIII 6238 . G A 63.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.85;MQ0=4;MQRankSum=1.095;QD=1.75;ReadPosRankSum=-4.607;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,17:36:93:93,0,145 chrIII 6243 . G T 163.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.112;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.19;MQ0=4;MQRankSum=1.348;QD=4.08;ReadPosRankSum=-3.979;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,21:40:99:193,0,128 chrIII 6250 . C G 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.385;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.79;MQ0=2;MQRankSum=-2.111;QD=0.44;ReadPosRankSum=4.246;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,15:50:52:52,0,435 chrIII 6251 . C T 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.472;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.10;MQ0=1;MQRankSum=-0.192;QD=0.38;ReadPosRankSum=3.001;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,14:50:49:49,0,419 chrIII 6262 . C T 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.910;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.63;MQ0=3;MQRankSum=-0.263;QD=0.40;ReadPosRankSum=-4.087;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,13:57:53:53,0,450 chrIII 6267 . C G 413.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.061;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.46;MQ0=3;MQRankSum=0.941;QD=7.12;ReadPosRankSum=5.141;SB=-6.547e-03 GT:AD:DP:GQ:PL 0/1:13,45:58:49:443,0,49 chrIII 6268 . C T 444.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.883;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.46;MQ0=3;MQRankSum=0.426;QD=7.66;ReadPosRankSum=5.319;SB=-2.373e-02 GT:AD:DP:GQ:PL 0/1:13,45:58:21:474,0,21 chrIII 6279 . C T 497 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.21;MQ0=12;QD=9.04;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:60:530,60,0 chrIII 6291 . T C 649 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.72;MQ0=13;QD=9.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:78:682,78,0 chrIII 6293 . G T 650 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.81;MQ0=13;QD=9.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:78:683,78,0 chrIII 6337 . G A 563 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.17;MQ0=15;QD=10.43;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:69:596,69,0 chrIII 6389 . G A 736 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=3;QD=13.14;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:84:769,84,0 chrIII 6401 . G A 708 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.04;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=2;QD=9.97;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:84:741,84,0 chrIII 6403 . G A 757 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=2;QD=10.51;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:90:790,90,0 chrIII 6410 . T C 791 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8464;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=4;MQRankSum=-2.000;QD=7.75;ReadPosRankSum=2.928;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:4,98:102:96:824,96,0 chrIII 6445 . A T 512 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=118.2372;MLEAC=2;MLEAF=1.00;MQ=27.00;MQ0=6;MQRankSum=1.014;QD=3.63;ReadPosRankSum=1.655;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:1,140:141:63:545,63,0 chrIII 6475 . G A 660 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.8598;MLEAC=2;MLEAF=1.00;MQ=21.21;MQ0=3;MQRankSum=0.817;QD=4.10;ReadPosRankSum=-2.123;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,159:161:78:693,78,0 chrIII 6489 . A G 618 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=20.31;MQ0=1;QD=3.96;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,156:156:75:651,75,0 chrIII 6493 . T C 566 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.365;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=20.11;MQ0=0;MQRankSum=-0.099;QD=3.39;ReadPosRankSum=3.407;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:4,163:167:69:599,69,0 chrIII 6499 . T C 634 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.4555;MLEAC=2;MLEAF=1.00;MQ=19.80;MQ0=1;QD=3.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,169:169:78:667,78,0 chrIII 6513 . C T 1141 filter AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=19.63;MQ0=6;QD=5.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:1174,135,0 chrIII 6542 . A G 1794 filter AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=20.83;MQ0=12;QD=7.26;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,244:247:99:1827,213,0 chrIII 6557 . C T 1018.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.036;DP=239;Dels=0.00;FS=18.013;HaplotypeScore=23.1169;MLEAC=1;MLEAF=0.500;MQ=28.12;MQ0=13;MQRankSum=0.259;QD=4.26;ReadPosRankSum=-2.235;SB=-2.860e+02 GT:AD:DP:GQ:PL 0/1:113,126:239:99:1048,0,1202 chrIII 6617 . G A 7245.01 filter AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=34.29;MQ0=4;QD=21.95;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:0,329:330:99:7245,798,0 chrIII 6633 . G T 2139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.219;DP=359;Dels=0.00;FS=4.148;HaplotypeScore=20.3336;MLEAC=1;MLEAF=0.500;MQ=34.25;MQ0=4;MQRankSum=-1.125;QD=5.96;ReadPosRankSum=-1.654;SB=-8.640e+02 GT:AD:DP:GQ:PL 0/1:195,163:359:99:2169,0,3274 chrIII 6726 . G A 2947.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.340;DP=411;Dels=0.00;FS=30.289;HaplotypeScore=20.1365;MLEAC=1;MLEAF=0.500;MQ=31.09;MQ0=2;MQRankSum=4.961;QD=7.17;ReadPosRankSum=0.762;SB=-1.254e+03 GT:AD:DP:GQ:PL 0/1:196,215:411:99:2977,0,1779 chrIII 6747 . C T 5176.01 filter AC=2;AF=1.00;AN=2;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=15.1970;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=8;QD=15.22;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:0,337:340:99:5176,582,0 chrIII 6821 . A G 1581.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;DP=245;Dels=0.00;FS=38.333;HaplotypeScore=10.4536;MLEAC=1;MLEAF=0.500;MQ=26.53;MQ0=49;MQRankSum=-2.615;QD=6.45;ReadPosRankSum=-2.132;SB=-2.550e+02 GT:AD:DP:GQ:PL 0/1:117,128:245:99:1611,0,1199 chrIII 6873 . C G 2366.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.385;DP=256;Dels=0.00;FS=58.881;HaplotypeScore=19.8615;MLEAC=1;MLEAF=0.500;MQ=32.35;MQ0=47;MQRankSum=1.227;QD=9.24;ReadPosRankSum=1.351;SB=-1.043e+03 GT:AD:DP:GQ:PL 0/1:91,161:256:99:2396,0,558 chrIII 6881 . T C 2255.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.278;DP=250;Dels=0.00;FS=28.758;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=33.88;MQ0=43;MQRankSum=2.436;QD=9.02;ReadPosRankSum=1.683;SB=-9.260e+02 GT:AD:DP:GQ:PL 0/1:84,162:250:99:2285,0,345 chrIII 6893 . C T 2827.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.222;DP=243;Dels=0.00;FS=63.485;HaplotypeScore=19.7130;MLEAC=1;MLEAF=0.500;MQ=34.57;MQ0=41;MQRankSum=2.077;QD=11.63;ReadPosRankSum=1.032;SB=-1.548e+03 GT:AD:DP:GQ:PL 0/1:69,172:243:99:2857,0,111 chrIII 6977 . A G 478 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=16.49;MQ0=75;MQRankSum=-0.387;QD=4.47;ReadPosRankSum=2.281;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:2,102:107:60:511,60,0 chrIII 7025 . A G 1259 filter AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.2130;MLEAC=2;MLEAF=1.00;MQ=15.13;MQ0=85;QD=6.11;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,204:206:99:1292,159,0 chrIII 7109 . T C 1208 filter AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.9238;MLEAC=2;MLEAF=1.00;MQ=15.81;MQ0=102;QD=5.86;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,205:206:99:1241,150,0 chrIII 7626 . A G 4257.01 filter AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.5009;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=10;QD=21.61;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4257,492,0 chrIII 7787 . C T 4617.01 filter AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.0266;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=15;QD=20.34;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:4617,519,0 chrIII 7952 . T C 3539.01 filter AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=30.58;MQ0=45;QD=15.25;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:2,229:232:99:3539,417,0 chrIII 8006 . T C 1187 filter AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=18.78;MQ0=75;QD=7.47;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,157:159:99:1220,144,0 chrIII 8027 . G A 941 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.78;MQ0=58;QD=7.84;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:974,108,0 chrIII 8066 . C T 334 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=14.92;MQ0=50;QD=4.77;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,68:70:39:367,39,0 chrIII 8344 . T C 852 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=43.6834;MLEAC=2;MLEAF=1.00;MQ=36.00;MQ0=6;QD=13.52;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:885,105,0 chrIII 8528 . T C 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=9.0562;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=1;MQRankSum=0.967;QD=18.63;ReadPosRankSum=1.711;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3107,363,0 chrIII 8542 . T C 2645 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;QD=19.74;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2678,303,0 chrIII 8572 . T C 1598 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=159.0836;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=2;QD=15.08;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1631,183,0 chrIII 8584 . A T 282.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.646;DP=116;Dels=0.00;FS=33.693;HaplotypeScore=68.6635;MLEAC=1;MLEAF=0.500;MQ=36.95;MQ0=7;MQRankSum=2.994;QD=2.43;ReadPosRankSum=-4.605;SB=-1.510e+02 GT:AD:DP:GQ:PL 0/1:89,27:116:99:312,0,105 chrIII 8587 . A T 243.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;DP=124;Dels=0.00;FS=39.554;HaplotypeScore=122.4974;MLEAC=1;MLEAF=0.500;MQ=36.68;MQ0=8;MQRankSum=-3.033;QD=1.96;ReadPosRankSum=5.256;SB=-1.570e+02 GT:AD:DP:GQ:PL 0/1:21,103:124:99:273,0,202 chrIII 8685 . C T 3749.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.840;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=5.1335;MLEAC=2;MLEAF=1.00;MQ=37.22;MQ0=18;MQRankSum=-1.400;QD=17.36;ReadPosRankSum=1.190;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:3749,403,0 chrIII 8696 . G A 3355.01 filter AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=33.21;MQ0=23;QD=16.13;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3355,381,0 chrIII 8743 . C T 4761.01 filter AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=13.5683;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=9;QD=20.09;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:4761,543,0 chrIII 8774 . T C 5481.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.050;DP=267;Dels=0.00;FS=15.451;HaplotypeScore=20.7394;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=9;MQRankSum=0.108;QD=20.53;ReadPosRankSum=5.055;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:9,255:267:99:5481,647,0 chrIII 8940 . T C 6624.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=41.54;MQ0=30;MQRankSum=-0.892;QD=19.77;ReadPosRankSum=1.596;SB=-2.963e+03 GT:AD:DP:GQ:PL 1/1:1,333:335:99:6624,771,0 chrIII 8947 . T G 6374.01 filter AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=25;QD=20.30;SB=-3.090e+03 GT:AD:DP:GQ:PL 1/1:0,311:314:99:6374,732,0 chrIII 9265 . G A 2176 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.31;MQ0=9;QD=23.15;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2209,252,0 chrIII 9392 . C T 4489.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.5507;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=2;QD=25.80;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4489,504,0 chrIII 9461 . G T 1641 filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.66;MQ0=19;QD=15.48;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1674,195,0 chrIII 9590 . C G 999.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.344;DP=270;Dels=0.00;FS=1.793;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=19.83;MQ0=52;MQRankSum=-0.279;QD=3.70;ReadPosRankSum=0.820;SB=-2.780e+02 GT:AD:DP:GQ:PL 0/1:140,127:270:99:1029,0,1386 chrIII 9739 . A G 5207.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=271;Dels=0.00;FS=7.088;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=21.08;MQ0=50;MQRankSum=-2.416;QD=19.21;ReadPosRankSum=2.427;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:2,269:271:99:5207,594,0 chrIII 9807 . A G 1564 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.627;DP=190;Dels=0.00;FS=5.910;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=15.14;MQ0=106;MQRankSum=-0.940;QD=8.23;ReadPosRankSum=2.844;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:3,186:190:99:1597,192,0 chrIII 9966 . A C 391 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.022;DP=133;Dels=0.00;FS=26.881;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=12.29;MQ0=109;MQRankSum=-0.213;QD=2.94;ReadPosRankSum=3.022;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:4,126:133:48:424,48,0 chrIII 9975 . C A 533 filter AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=12.25;MQ0=101;QD=4.04;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,132:132:66:566,66,0 chrIII 10164 . T C 1972 filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=25.61;MQ0=5;QD=19.52;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2005,237,0 chrIII 10215 . G T 863.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.895;DP=126;Dels=0.00;FS=3.080;HaplotypeScore=10.3743;MLEAC=1;MLEAF=0.500;MQ=22.60;MQ0=40;MQRankSum=2.699;QD=6.85;ReadPosRankSum=-0.379;SB=-3.750e+02 GT:AD:DP:GQ:PL 0/1:50,73:126:99:893,0,498 chrIII 10258 . T C 103.26 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.11;MQ0=39;QD=2.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:46:15:136,15,0 chrIII 10555 . G T 118.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=11.00;MQ0=60;MQRankSum=1.630;QD=1.31;ReadPosRankSum=-0.275;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,46:90:99:148,0,121 chrIII 10626 . T G 689.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.806;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.8634;MLEAC=1;MLEAF=0.500;MQ=14.80;MQ0=85;MQRankSum=0.769;QD=3.25;ReadPosRankSum=0.374;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,111:212:99:719,0,642 chrIII 11039 . C A 1455.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.277;DP=178;Dels=0.00;FS=13.403;HaplotypeScore=6.6815;MLEAC=1;MLEAF=0.500;MQ=39.91;MQ0=3;MQRankSum=-0.892;QD=8.17;ReadPosRankSum=1.417;SB=-4.020e+02 GT:AD:DP:GQ:PL 0/1:80,98:178:99:1485,0,1202 chrIII 11275 . C T 490 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.66;MQ0=0;QD=11.40;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:60:523,60,0 chrIII 11290 . C T 525 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=0;QD=11.93;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,43:44:63:558,63,0 chrIII 11297 . T A 532 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;MQRankSum=1.575;QD=12.09;ReadPosRankSum=1.654;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:1,43:44:63:565,63,0 chrIII 11299 . A T 520 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=11.82;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:63:553,63,0 chrIII 11302 . T A 461 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=10.24;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:57:494,57,0 chrIII 11312 . A T 547 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.56;MQ0=0;QD=11.40;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:66:580,66,0 chrIII 11341 . A G 533 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.91;MQ0=0;QD=13.32;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:66:566,66,0 chrIII 11382 . C A 483 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=16.10;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:60:516,60,0 chrIII 11391 . C T 465 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=16.61;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:60:498,60,0 chrIII 11416 . A G 558 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.78;MQ0=0;QD=21.46;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:69:591,69,0 chrIII 11417 . T C 575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=29;Dels=0.00;FS=6.495;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=0;MQRankSum=-2.367;QD=19.83;ReadPosRankSum=2.281;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:2,27:29:72:608,72,0 chrIII 11567 . G A 1197 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.02;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=26.75;MQ0=32;QD=13.45;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:10,77:87:99:1230,135,0 chrIII 11775 . G T 188.01 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=23.90;MQ0=3;QD=6.48;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,27:29:27:221,27,0 chrIII 11782 . T A 100.26 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.28;MQ0=19;QD=3.04;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:1,32:33:15:133,15,0 chrIII 13881 . C A 344 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.97;MQ0=78;QD=3.70;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:42:377,42,0 chrIII 13921 . C T 162.06 filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=8.88;MQ0=92;QD=1.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,99:99:21:195,21,0 chrIII 13965 . G C 1066 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.68;MQ0=52;QD=10.45;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1099,135,0 chrIII 14001 . C T 1207 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.60;MQ0=10;QD=16.09;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1240,147,0 chrIII 14003 . C T 1239 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.55;MQ0=8;QD=16.74;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1272,150,0 chrIII 14006 . G A 1259 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=35.84;MQ0=4;QD=15.94;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1292,153,0 chrIII 14054 . G A 1092 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.4534;MLEAC=2;MLEAF=1.00;MQ=40.18;MQ0=0;QD=14.18;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1125,129,0 chrIII 14059 . T C 997 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=6.4534;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;QD=13.66;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1030,117,0 chrIII 14069 . G T 1056 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;QD=14.47;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1089,123,0 chrIII 14112 . A T 692 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=51.4310;MLEAC=2;MLEAF=1.00;MQ=32.84;MQ0=0;QD=11.53;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:84:725,84,0 chrIII 14139 . G T 877 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;QD=11.85;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:910,102,0 chrIII 14147 . A C 869 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;QD=11.43;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:902,105,0 chrIII 14171 . G C 1103 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.63;MQ0=0;QD=13.45;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1136,135,0 chrIII 14185 . C T 1279 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=36.91;MQ0=0;QD=14.87;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1312,147,0 chrIII 14191 . G A 1171 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=38.51;MQ0=0;QD=13.46;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1204,138,0 chrIII 14222 . C T 1357 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=43.27;MQ0=0;QD=15.60;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1390,165,0 chrIII 14289 . T C 2079 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=42.90;MQ0=0;QD=21.88;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2112,243,0 chrIII 14340 . A C 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.024;DP=93;Dels=0.00;FS=4.914;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=0;MQRankSum=1.397;QD=21.24;ReadPosRankSum=0.950;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2008,212,0 chrIII 14356 . A T 1388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.95;MQ0=0;MQRankSum=1.262;QD=17.14;ReadPosRankSum=1.689;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1421,168,0 chrIII 14479 . A G 1632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=3.496;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;MQRankSum=-0.102;QD=19.20;ReadPosRankSum=1.691;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1665,201,0 chrIII 14489 . G T 1526 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=18.61;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1559,180,0 chrIII 14490 . C T 1529 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=18.65;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1562,180,0 chrIII 14491 . A G 1500 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=18.07;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1533,180,0 chrIII 14577 . C T 1301 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=18.59;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1334,150,0 chrIII 14589 . T C 1071 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=58.4451;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;QD=16.48;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1104,126,0 chrIII 14619 . T C 817 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;QD=11.19;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:96:850,96,0 chrIII 14620 . T C 776 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;QD=10.63;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:93:809,93,0 chrIII 14631 . T A 922 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=0;QD=12.29;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:955,105,0 chrIII 14693 . G T 1691 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.1037;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=17.99;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1724,195,0 chrIII 14793 . A G 1796 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;QD=22.45;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1829,213,0 chrIII 14817 . C T 1791 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=23.88;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1824,210,0 chrIII 14924 . G A 2269 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=22.92;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2302,267,0 chrIII 14993 . C T 1873 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;QD=20.58;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1906,219,0 chrIII 15001 . C T 1690 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;QD=18.57;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1723,198,0 chrIII 15004 . G A 1754 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;QD=18.86;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1787,204,0 chrIII 15033 . A C 1367 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.02;FS=0.000;HaplotypeScore=79.1062;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=15.36;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1400,165,0 chrIII 15093 . G A 2562 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.66;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2595,291,0 chrIII 15165 . G A 2454 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;QD=21.53;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2487,288,0 chrIII 15172 . C T 2364 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.75;MQ0=0;QD=22.09;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2397,276,0 chrIII 15182 . C T 2256 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=21.69;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2289,267,0 chrIII 15242 . T G 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=105;Dels=0.00;FS=7.034;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;MQRankSum=-1.746;QD=18.17;ReadPosRankSum=2.403;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:1941,228,0 chrIII 15259 . A G 2081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=1.046;QD=19.27;ReadPosRankSum=1.699;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,105:108:99:2114,249,0 chrIII 15280 . G T 2426 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.25;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2459,282,0 chrIII 15335 . G A 2599 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.3617;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=19.54;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2632,300,0 chrIII 15380 . T C 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=0;MQRankSum=-0.180;QD=16.06;ReadPosRankSum=1.677;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2040,240,0 chrIII 15382 . A C 1984 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.32;MQ0=0;QD=16.40;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2017,237,0 chrIII 15394 . G A 1786 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=0;QD=14.64;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1819,210,0 chrIII 15398 . C T 1701 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.33;MQ0=0;QD=14.42;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1734,201,0 chrIII 15430 . T G 2059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.487;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;MQRankSum=-0.107;QD=18.22;ReadPosRankSum=0.506;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2092,240,0 chrIII 15478 . T G 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=122;Dels=0.00;FS=6.281;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-1.519;QD=20.49;ReadPosRankSum=2.326;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:2,117:122:99:2533,288,0 chrIII 15510 . G A 3015 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.37;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3048,345,0 chrIII 15638 . G T 2366 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.94;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2399,273,0 chrIII 15697 . C G 2017 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.58;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2050,237,0 chrIII 15846 . G A 2095 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2715;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.95;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2128,246,0 chrIII 15960 . C T 2615 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.81;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2648,300,0 chrIII 16356 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.3620;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.093;QD=19.69;ReadPosRankSum=0.062;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,169:173:99:3407,390,0 chrIII 16476 . A G 4189.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.5333;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4189,497,0 chrIII 16545 . A G 3541.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.9923;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.85;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3541,425,0 chrIII 16578 . G A 3620.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.3768;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.45;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3620,420,0 chrIII 16708 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.87;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3142,357,0 chrIII 16833 . G A 2796 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2829,321,0 chrIII 16920 . T C 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=127;Dels=0.00;FS=6.699;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.165;QD=22.28;ReadPosRankSum=2.411;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2862,327,0 chrIII 17510 . G A 6463.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=12.2184;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.76;SB=-3.317e+03 GT:AD:DP:GQ:PL 1/1:0,297:297:99:6463,732,0 chrIII 17635 . C T 4922.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.9584;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.17;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4922,546,0 chrIII 17787 . C T 4093.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=16.9075;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.43;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4093,459,0 chrIII 17917 . A G 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=192;Dels=0.00;FS=2.957;HaplotypeScore=12.6112;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.267;QD=20.21;ReadPosRankSum=2.424;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:2,187:192:99:3881,453,0 chrIII 18052 . A C 4436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=194;Dels=0.00;FS=3.240;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.286;QD=22.87;ReadPosRankSum=1.714;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4436,504,0 chrIII 18152 . G A 4413.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.74;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4413,498,0 chrIII 18173 . G A 4380.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=20.96;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4380,492,0 chrIII 18277 . T C 4813.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.68;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4813,555,0 chrIII 18342 . C T 4909.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.53;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4909,561,0 chrIII 18583 . C T 1813 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.49;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1846,216,0 chrIII 18613 . T G 1220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.637;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0758;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.119;QD=16.49;ReadPosRankSum=0.498;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1253,137,0 chrIII 18676 . C T 1110 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=14.2193;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.94;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1143,129,0 chrIII 18742 . C T 1294 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.61;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1327,153,0 chrIII 18757 . G C 1358 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.58;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1391,162,0 chrIII 18759 . C T 1371 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=21.09;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1404,159,0 chrIII 18804 . G T 672 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=12.22;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:81:705,81,0 chrIII 18813 . C G 644 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=9.61;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,64:67:78:677,78,0 chrIII 18828 . G A 885 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=11.96;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:918,105,0 chrIII 18860 . A T 1562 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=15.62;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1595,180,0 chrIII 19311 . C A 3607.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.69;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3607,408,0 chrIII 19341 . T C 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.946;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.0532;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-1.511;QD=20.84;ReadPosRankSum=-1.560;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2992,345,0 chrIII 19446 . A T 2741 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.1968;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=19.30;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2774,321,0 chrIII 19497 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=20.81;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3030,333,0 chrIII 19506 . C T 2593 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=18.52;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2626,300,0 chrIII 19524 . G A 2395 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=18.57;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2428,273,0 chrIII 19605 . G A 2906 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.88;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2939,330,0 chrIII 19830 . A G 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=176;Dels=0.00;FS=7.063;HaplotypeScore=17.5750;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.612;QD=20.99;ReadPosRankSum=2.379;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:2,171:176:99:3694,423,0 chrIII 19865 . G C 3768.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.17;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3768,449,0 chrIII 19992 . A G 4086.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.1075;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.06;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4086,468,0 chrIII 20428 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.4052;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.50;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2871,321,0 chrIII 20599 . G A 2659 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.53;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2692,300,0 chrIII 20708 . C T 2997 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.53;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3030,342,0 chrIII 20844 . G T 3176 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.89;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3209,357,0 chrIII 20868 . T A 3633.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.64;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3633,408,0 chrIII 20894 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=19.86;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3296,369,0 chrIII 20982 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.88;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2580,288,0 chrIII 20985 . A G 2339 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=19.17;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2372,285,0 chrIII 21055 . G A 2860 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.1007;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.82;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2893,327,0 chrIII 21060 . T A 2858 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.31;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2891,327,0 chrIII 21111 . A G 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.066;DP=134;Dels=0.00;FS=5.271;HaplotypeScore=8.2230;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-1.092;QD=18.48;ReadPosRankSum=3.275;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:4,130:134:99:2509,300,0 chrIII 21165 . T C 2298 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.9211;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.28;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2331,270,0 chrIII 21204 . T C 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=139;Dels=0.00;FS=2.951;HaplotypeScore=7.8672;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.098;QD=21.28;ReadPosRankSum=2.414;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2991,339,0 chrIII 21491 . T C 5642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=15.9837;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.775;QD=22.84;ReadPosRankSum=1.704;SB=-2.978e+03 GT:AD:DP:GQ:PL 1/1:1,245:247:99:5642,636,0 chrIII 21591 . C G 3900.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.0678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.12;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:3900,453,0 chrIII 21650 . A G 4406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=202;Dels=0.00;FS=6.217;HaplotypeScore=11.0845;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.161;QD=21.81;ReadPosRankSum=2.401;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4406,510,0 chrIII 21720 . A G 4594.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.6734;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.09;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4594,540,0 chrIII 21827 . A C 3688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.317;DP=183;Dels=0.00;FS=17.705;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.929;QD=20.15;ReadPosRankSum=4.426;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:7,175:183:99:3688,438,0 chrIII 21985 . T C 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=-0.784;QD=23.19;ReadPosRankSum=1.713;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4151,474,0 chrIII 22016 . T C 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.469;DP=191;Dels=0.00;FS=2.904;HaplotypeScore=11.3883;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.701;QD=20.43;ReadPosRankSum=1.910;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3902,429,0 chrIII 22138 . G T 3917.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.77;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3917,453,0 chrIII 22182 . C T 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.520;DP=154;Dels=0.00;FS=10.289;HaplotypeScore=6.2851;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=1.729;QD=17.54;ReadPosRankSum=1.491;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:7,146:154:99:2734,324,0 chrIII 22184 . A C 2593 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.04;FS=0.000;HaplotypeScore=11.7206;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=16.52;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2626,318,0 chrIII 22203 . G A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.91;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3283,378,0 chrIII 22290 . C A 2762 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.73;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2795,321,0 chrIII 22292 . C A 2763 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.46;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2796,324,0 chrIII 22337 . C T 2036 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=18.51;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2069,234,0 chrIII 22397 . G A 2176 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.91;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2209,249,0 chrIII 22470 . T C 2899 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.16;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2932,353,0 chrIII 23002 . A G 5455.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.2973;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.41;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:0,230:233:99:5455,633,0 chrIII 23032 . G A 5412.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.9866;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.33;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5412,603,0 chrIII 23149 . T C 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.5808;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.354;QD=22.88;ReadPosRankSum=1.712;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4049,459,0 chrIII 23448 . A C 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=24.3944;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.857;QD=20.34;ReadPosRankSum=1.714;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:3884,447,0 chrIII 23694 . A G 4141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=191;Dels=0.00;FS=3.009;HaplotypeScore=11.8096;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.242;QD=21.68;ReadPosRankSum=2.423;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:2,186:191:99:4141,480,0 chrIII 23930 . T C 2529 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.62;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2562,294,0 chrIII 24059 . G A 5074.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.63;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5074,579,0 chrIII 24173 . C T 4305.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.2040;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.52;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4305,495,0 chrIII 24329 . A G 3880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.5843;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-0.517;QD=17.56;ReadPosRankSum=2.372;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:3880,459,0 chrIII 24352 . A G 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.378;DP=213;Dels=0.00;FS=2.390;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-1.485;QD=18.72;ReadPosRankSum=3.386;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:4,208:213:99:3988,462,0 chrIII 24492 . T C 3960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=176;Dels=0.00;FS=2.916;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.540;QD=22.50;ReadPosRankSum=2.422;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3960,456,0 chrIII 24520 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.228;QD=20.68;ReadPosRankSum=1.688;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3308,387,0 chrIII 24607 . C T 3852.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.89;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3852,438,0 chrIII 24833 . C G 3001 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.99;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3034,345,0 chrIII 25125 . C T 3207 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.1139;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.27;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3240,363,0 chrIII 25169 . T C 2466 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.55;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2499,288,0 chrIII 25319 . C T 2764 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.10;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2797,324,0 chrIII 25355 . G T 2928 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.06;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2961,336,0 chrIII 25463 . T G 2798 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=19.30;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2831,327,0 chrIII 25467 . A G 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.469;DP=148;Dels=0.00;FS=4.986;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=-0.490;QD=16.55;ReadPosRankSum=1.708;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,144:148:99:2483,297,0 chrIII 25689 . G A 3785.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.6942;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.71;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,188:192:99:3785,435,0 chrIII 25808 . C T 4411.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=24.4306;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.84;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4411,492,0 chrIII 26192 . G A 3629.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.50;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3629,411,0 chrIII 26229 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.16;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3844,423,0 chrIII 26423 . A G 2293 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.47;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2326,279,0 chrIII 26609 . T A 3498.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.3582;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.01;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3498,396,0 chrIII 26769 . G A 3495.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.55;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3495,405,0 chrIII 26798 . T C 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=4.215;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-1.495;QD=19.78;ReadPosRankSum=1.689;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3217,392,0 chrIII 26807 . T C 3629.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.60;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3629,411,0 chrIII 26923 . A C 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=117;Dels=0.00;FS=2.710;HaplotypeScore=5.8515;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.651;QD=22.32;ReadPosRankSum=2.387;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2645,306,0 chrIII 27372 . T A 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=176;Dels=0.00;FS=3.086;HaplotypeScore=12.7855;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.370;QD=18.26;ReadPosRankSum=1.652;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3246,375,0 chrIII 27478 . A G 2638 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.36;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2671,309,0 chrIII 27651 . C T 1850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=20.2186;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=1.531;QD=20.56;ReadPosRankSum=0.201;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:1,87:90:99:1883,210,0 chrIII 27717 . T C 1374 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=14.93;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1407,162,0 chrIII 27724 . G C 1480 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=15.58;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1513,177,0 chrIII 27740 . C A 1843 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=15.89;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:1876,213,0 chrIII 27744 . A G 1935 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=15.99;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:1968,225,0 chrIII 28362 . G A 4083.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=15.8395;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.74;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4083,462,0 chrIII 28477 . A G 4463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=188;Dels=0.00;FS=13.971;HaplotypeScore=20.2357;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.182;QD=23.74;ReadPosRankSum=2.963;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:4463,510,0 chrIII 28543 . G A 5230.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.16;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5230,588,0 chrIII 28567 . C T 4498.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=6.3411;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=18.66;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:4498,504,0 chrIII 28570 . T C 4232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.823;DP=252;Dels=0.00;FS=7.484;HaplotypeScore=6.5440;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=-1.024;QD=16.79;ReadPosRankSum=3.792;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:5,246:252:99:4232,483,0 chrIII 28597 . G A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=7.4060;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=17.17;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:4206,465,0 chrIII 28857 . C T 3220.05 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=19.0975;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.91;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3253,369,0 chrIII 28955 . C T 2506 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2539,288,0 chrIII 29261 . G A 1953 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.94;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1986,228,0 chrIII 29273 . C T 1884 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=21.66;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1917,222,0 chrIII 29326 . T A 1703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.039;DP=78;Dels=0.00;FS=3.663;HaplotypeScore=12.3483;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=1.217;QD=21.83;ReadPosRankSum=1.565;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1736,192,0 chrIII 29373 . T G 1579 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.7320;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.49;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1612,186,0 chrIII 29388 . G A 1532 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=20.99;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1565,177,0 chrIII 29511 . A C 1125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.132;DP=62;Dels=0.00;FS=21.292;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;MQRankSum=1.967;QD=18.15;ReadPosRankSum=3.307;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:4,57:62:99:1158,138,0 chrIII 29612 . G A 950 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=16.38;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:983,114,0 chrIII 29668 . G A 594 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.35;MQ0=0;QD=10.07;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:69:627,69,0 chrIII 29675 . T A 628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=33.97;MQ0=0;MQRankSum=-1.439;QD=10.47;ReadPosRankSum=1.674;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:75:661,75,0 chrIII 29700 . A G 1120 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.46;MQ0=0;QD=14.55;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1153,135,0 chrIII 29722 . A G 1196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;MQRankSum=-0.346;QD=14.95;ReadPosRankSum=1.689;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1229,141,0 chrIII 29724 . A T 1310 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=15.78;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1343,153,0 chrIII 29747 . A G 1524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;MQRankSum=-0.711;QD=15.71;ReadPosRankSum=1.696;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:1,94:97:99:1557,177,0 chrIII 29774 . C T 1495 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=16.99;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1528,174,0 chrIII 29830 . T A 2217 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=20.53;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2250,246,0 chrIII 29840 . C T 2218 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=18.64;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2251,258,0 chrIII 29922 . A G 2508 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=23.01;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2541,294,0 chrIII 30004 . C T 2145 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=20.24;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2178,246,0 chrIII 30013 . C T 2097 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=18.08;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2130,246,0 chrIII 30018 . A G 2236 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=18.18;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2269,267,0 chrIII 30246 . C A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=23.84;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3385,381,0 chrIII 30338 . C T 2252 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2285,258,0 chrIII 30479 . T C 2135 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2168,249,0 chrIII 30860 . T G 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=98;Dels=0.00;FS=2.977;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.130;QD=20.94;ReadPosRankSum=2.399;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:2,95:98:99:2085,243,0 chrIII 31050 . G A 2409 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2442,282,0 chrIII 31089 . G C 2652 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.67;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2685,309,0 chrIII 31156 . A T 2508 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.5148;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.89;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2541,285,0 chrIII 31227 . T A 2519 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2552,294,0 chrIII 31414 . A G 3085 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3118,360,0 chrIII 31787 . T A 4060.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4060,456,0 chrIII 32243 . G C 3591.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3591,423,0 chrIII 32547 . G A 5034.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.2150;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5034,579,0 chrIII 32909 . G A 6023.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.08;SB=-3.227e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:6023,678,0 chrIII 32927 . T C 5486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=258;Dels=0.00;FS=3.010;HaplotypeScore=7.8891;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-1.099;QD=21.26;ReadPosRankSum=2.421;SB=-3.058e+03 GT:AD:DP:GQ:PL 1/1:2,256:258:99:5486,633,0 chrIII 33140 . T C 4813.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=11.0465;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.88;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4813,555,0 chrIII 33329 . T C 4312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=194;Dels=0.00;FS=3.025;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=2.133;QD=22.23;ReadPosRankSum=2.412;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4312,504,0 chrIII 33566 . T C 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-1.134;QD=20.59;ReadPosRankSum=1.714;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4057,468,0 chrIII 33569 . A C 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=198;Dels=0.01;FS=3.191;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-1.237;QD=17.97;ReadPosRankSum=1.714;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:3558,408,0 chrIII 33587 . T C 3694.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.1824;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.04;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3694,438,0 chrIII 33692 . A G 5822.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=18.9171;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.81;SB=-3.270e+03 GT:AD:DP:GQ:PL 1/1:0,264:267:99:5822,672,0 chrIII 33845 . A G 5031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=238;Dels=0.00;FS=5.527;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=1.595;QD=21.14;ReadPosRankSum=2.895;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:3,235:238:99:5031,590,0 chrIII 34008 . T C 4395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=4.488;HaplotypeScore=8.3821;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.332;QD=21.13;ReadPosRankSum=1.715;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4395,507,0 chrIII 34592 . G A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.7350;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.11;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3294,378,0 chrIII 34635 . C T 3909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=178;Dels=0.00;FS=2.760;HaplotypeScore=16.6233;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.104;QD=21.96;ReadPosRankSum=-0.687;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3909,431,0 chrIII 34667 . G A 4555.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.9765;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.12;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4555,504,0 chrIII 34749 . C T 4167.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.6439;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=21.37;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4167,471,0 chrIII 34755 . G A 4073.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=21.90;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4073,456,0 chrIII 34905 . G A 3765.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.83;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:3765,426,0 chrIII 35049 . G A 3060 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.55;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3093,354,0 chrIII 36147 . C T 3907.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,163:167:99:3907,435,0 chrIII 36186 . C G 3808.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.6516;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3808,441,0 chrIII 36388 . A G 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.335;QD=21.18;ReadPosRankSum=1.666;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3368,387,0 chrIII 36653 . G A 4816.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.3730;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.89;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4816,540,0 chrIII 36684 . T A 5175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.987;QD=21.84;ReadPosRankSum=1.717;SB=-2.991e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:5175,582,0 chrIII 36852 . C T 6720.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.70;SB=-3.099e+03 GT:AD:DP:GQ:PL 1/1:0,294:296:99:6720,756,0 chrIII 36914 . T C 7309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=319;Dels=0.00;FS=5.582;HaplotypeScore=16.2794;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=1.283;QD=22.91;ReadPosRankSum=2.959;SB=-3.197e+03 GT:AD:DP:GQ:PL 1/1:3,313:319:99:7309,851,0 chrIII 37159 . T C 6492.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=5.9011;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.71;SB=-3.679e+03 GT:AD:DP:GQ:PL 1/1:0,296:299:99:6492,738,0 chrIII 37170 . A G 6350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=318;Dels=0.00;FS=3.008;HaplotypeScore=12.8698;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.809;QD=19.97;ReadPosRankSum=2.395;SB=-3.778e+03 GT:AD:DP:GQ:PL 1/1:2,315:318:99:6350,741,0 chrIII 37525 . A G 4855.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=7.8403;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.31;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,239:239:99:4855,564,0 chrIII 37664 . A G 2023 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.75;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2056,240,0 chrIII 37672 . G A 1931 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.70;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1964,225,0 chrIII 37731 . C T 1043 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.04;FS=0.000;HaplotypeScore=11.4203;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.45;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1076,123,0 chrIII 38022 . G A 4249.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.70;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4249,480,0 chrIII 38178 . A G 4123.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.17;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4123,497,0 chrIII 38318 . G A 4272.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.48;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4272,483,0 chrIII 38664 . A G 3876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.622;QD=20.40;ReadPosRankSum=1.677;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:3876,435,0 chrIII 38814 . T G 3084 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.70;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3117,363,0 chrIII 39123 . A T 4316.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=24.11;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4316,486,0 chrIII 39265 . T C 4665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=219;Dels=0.00;FS=4.090;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=1.208;QD=21.30;ReadPosRankSum=1.716;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:4665,537,0 chrIII 39326 . T G 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.7487;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;MQRankSum=0.316;QD=20.58;ReadPosRankSum=2.052;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:2,165:171:99:3520,402,0 chrIII 39333 . C T 3075 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=20.92;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3108,351,0 chrIII 39512 . A G 1916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=110;Dels=0.00;FS=3.049;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=37.99;MQ0=0;MQRankSum=-1.667;QD=17.42;ReadPosRankSum=2.405;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:1949,225,0 chrIII 39524 . G C 1869 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=0;QD=17.97;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:1902,216,0 chrIII 39525 . A C 1914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.096;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;MQRankSum=1.494;QD=18.76;ReadPosRankSum=1.698;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1947,222,0 chrIII 39539 . T A 1784 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=17.15;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1817,213,0 chrIII 39540 . C A 1868 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.83;MQ0=0;QD=17.79;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1901,213,0 chrIII 39552 . T C 1951 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9694;MLEAC=2;MLEAF=1.00;MQ=36.29;MQ0=0;QD=16.82;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1984,231,0 chrIII 39607 . A G 2096 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.3888;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=21.17;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2129,249,0 chrIII 39967 . A G 4059.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.30;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4059,494,0 chrIII 40089 . G A 3556.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.6291;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.80;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3556,402,0 chrIII 40109 . C A 4063.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.05;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4063,465,0 chrIII 40144 . C T 4109.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.0933;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.86;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4109,462,0 chrIII 40374 . G C 4509.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.1106;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.00;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4509,528,0 chrIII 40515 . G C 7548.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=16.4074;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.01;SB=-3.444e+03 GT:AD:DP:GQ:PL 1/1:0,340:343:99:7548,861,0 chrIII 40583 . C T 4625.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=16.3151;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.65;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4625,525,0 chrIII 40610 . C T 4526.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.8677;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.86;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4526,513,0 chrIII 40893 . G A 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.879;DP=67;Dels=0.00;FS=31.920;HaplotypeScore=6.6720;MLEAC=1;MLEAF=0.500;MQ=44.58;MQ0=0;MQRankSum=-1.846;QD=0.67;ReadPosRankSum=-4.986;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,18:67:75:75,0,169 chrIII 40894 . G A 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.290;DP=69;Dels=0.00;FS=44.763;HaplotypeScore=9.0380;MLEAC=1;MLEAF=0.500;MQ=45.10;MQ0=0;MQRankSum=-3.082;QD=0.51;ReadPosRankSum=-5.262;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,14:69:65:65,0,242 chrIII 40911 . G T 1617 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=13.4945;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.37;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1650,189,0 chrIII 40987 . G A 3444.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.3237;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.26;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3444,402,0 chrIII 41007 . T G 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-1.732;QD=17.89;ReadPosRankSum=1.609;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2556,291,0 chrIII 41015 . T C 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.672;DP=140;Dels=0.00;FS=4.879;HaplotypeScore=11.7963;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=-0.943;QD=17.49;ReadPosRankSum=3.762;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:5,135:140:99:2482,285,0 chrIII 41694 . A T 3172 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.6240;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=16.27;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3205,363,0 chrIII 41706 . C T 3072 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=16.52;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3105,351,0 chrIII 41852 . T C 830 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=19.76;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:863,99,0 chrIII 42612 . C T 2379 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.66;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2412,273,0 chrIII 42659 . G A 2880 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3001;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.18;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2913,330,0 chrIII 42698 . C G 3468.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.9342;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.41;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3468,405,0 chrIII 42728 . A C 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=148;Dels=0.00;FS=3.131;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.186;QD=20.18;ReadPosRankSum=1.685;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3019,351,0 chrIII 42761 . A C 3040 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.11;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3073,351,0 chrIII 43107 . T G 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.108;QD=21.04;ReadPosRankSum=1.710;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3366,410,0 chrIII 43304 . A G 3980.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.14;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3980,462,0 chrIII 43346 . G A 3797.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.47;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3797,426,0 chrIII 43513 . C T 2506 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.24;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2539,282,0 chrIII 43528 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.75;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2265,261,0 chrIII 43618 . C T 1622 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.78;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1655,183,0 chrIII 43754 . G T 3183 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.57;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3216,369,0 chrIII 43868 . G A 2897 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.57;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2930,333,0 chrIII 43874 . G A 2842 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=18.58;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2875,333,0 chrIII 43877 . G A 3065 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.90;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3098,345,0 chrIII 44055 . C T 4004.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.00;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4004,450,0 chrIII 45015 . T C 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=154;Dels=0.00;FS=6.163;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.997;QD=20.45;ReadPosRankSum=2.402;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3183,378,0 chrIII 45495 . G A 4527.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.22;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4527,516,0 chrIII 45755 . C T 4687.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4687,522,0 chrIII 46119 . G A 4225.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=20.22;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4225,480,0 chrIII 46132 . A C 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=4.033;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-0.786;QD=20.11;ReadPosRankSum=1.715;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4122,488,0 chrIII 46258 . C T 4687.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.7564;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.12;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4687,537,0 chrIII 46458 . T C 4696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=226;Dels=0.00;FS=3.507;HaplotypeScore=14.2285;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.375;QD=20.78;ReadPosRankSum=1.701;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:1,221:226:99:4696,540,0 chrIII 46562 . T A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.0476;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=21.13;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3486,393,0 chrIII 46724 . T C 5184.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5184,591,0 chrIII 46792 . A G 2910 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2943,336,0 chrIII 47690 . A T 2823 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.88;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2856,324,0 chrIII 47726 . A G 2695 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.8597;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.57;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2728,329,0 chrIII 47756 . G T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5964;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.25;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3379,378,0 chrIII 47944 . G A 3663.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=20.58;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3663,405,0 chrIII 47950 . T C 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=3.261;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-1.713;QD=18.91;ReadPosRankSum=1.713;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3385,404,0 chrIII 48029 . G A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.6644;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.47;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3378,390,0 chrIII 48544 . A G 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.161;DP=147;Dels=0.00;FS=2.350;HaplotypeScore=15.2234;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.387;QD=19.14;ReadPosRankSum=3.375;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:4,143:147:99:2846,333,0 chrIII 48704 . A G,T 972.01 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-5.082;DP=243;Dels=0.00;FS=13.863;HaplotypeScore=91.7798;MLEAC=1,1;MLEAF=0.500,0.500;MQ=38.28;MQ0=0;MQRankSum=-1.433;QD=4.00;ReadPosRankSum=-5.893;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/2:38,103,102:243:99:1032,241,131,790,0,758 chrIII 48707 . G A 615.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.846;DP=236;Dels=0.00;FS=3.458;HaplotypeScore=97.1703;MLEAC=1;MLEAF=0.500;MQ=37.76;MQ0=0;MQRankSum=-3.072;QD=2.61;ReadPosRankSum=-10.677;SB=-2.800e+02 GT:AD:DP:GQ:PL 0/1:142,93:236:99:645,0,265 chrIII 49436 . T C 5489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.621;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=18.6229;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.272;QD=20.79;ReadPosRankSum=2.353;SB=-3.026e+03 GT:AD:DP:GQ:PL 1/1:3,260:264:99:5489,617,0 chrIII 49799 . C A 8136.01 filter AC=2;AF=1.00;AN=2;DP=386;Dels=0.00;FS=0.000;HaplotypeScore=29.9039;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.08;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:0,384:386:99:8136,927,0 chrIII 50399 . T A 642 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=1.114;QD=22.93;ReadPosRankSum=1.609;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,27:28:78:675,78,0 chrIII 50609 . C G 2214 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.14;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2247,258,0 chrIII 51701 . C T 7759.01 filter AC=2;AF=1.00;AN=2;DP=363;Dels=0.00;FS=0.000;HaplotypeScore=27.7704;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.37;SB=-3.568e+03 GT:AD:DP:GQ:PL 1/1:0,361:363:99:7759,870,0 chrIII 51788 . G A 7078.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=31.6820;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.13;SB=-3.917e+03 GT:AD:DP:GQ:PL 1/1:0,334:335:99:7078,801,0 chrIII 51868 . C T 7341.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=27.9995;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.38;SB=-3.857e+03 GT:AD:DP:GQ:PL 1/1:0,323:328:99:7341,831,0 chrIII 51916 . G A 7187.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=19.8474;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.46;SB=-3.599e+03 GT:AD:DP:GQ:PL 1/1:0,318:320:99:7187,813,0 chrIII 52208 . C T 3611.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.2172;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.12;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3611,408,0 chrIII 52238 . A G 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.742;QD=20.57;ReadPosRankSum=1.622;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2625,297,0 chrIII 52334 . A G 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=0.746;QD=16.75;ReadPosRankSum=2.384;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:2,148:150:99:2545,291,0 chrIII 52365 . G C 1726 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=16.28;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1759,204,0 chrIII 52383 . T C 1285 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=16.91;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1318,153,0 chrIII 52445 . A G 104.13 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=2.60;SB=-1.031e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:18:137,18,0 chrIII 52699 . G A 3314.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.46;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3314,378,0 chrIII 52716 . T C 2758 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=17.68;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2791,341,0 chrIII 52747 . T C 2720 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=16.89;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2753,324,0 chrIII 52762 . C T 2810 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=16.63;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:2843,324,0 chrIII 52792 . A G 2721 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.01;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:2754,324,0 chrIII 52803 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=15.67;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:2807,321,0 chrIII 52919 . C T 4016.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.6620;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.83;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4016,447,0 chrIII 53891 . T C 8840.01 filter AC=2;AF=1.00;AN=2;DP=403;Dels=0.00;FS=0.000;HaplotypeScore=19.8652;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.94;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:0,403:403:99:8840,1017,0 chrIII 54180 . T C 5114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=255;Dels=0.00;FS=3.761;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=-0.302;QD=20.05;ReadPosRankSum=1.691;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:1,251:255:99:5114,605,0 chrIII 54721 . C T 2232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.493;QD=20.29;ReadPosRankSum=-1.033;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2265,258,0 chrIII 55716 . A G 4620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=206;Dels=0.00;FS=9.500;HaplotypeScore=18.4821;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.748;QD=22.43;ReadPosRankSum=2.413;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,200:206:99:4620,531,0 chrIII 55969 . A C 4542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=219;Dels=0.00;FS=5.217;HaplotypeScore=15.9660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.196;QD=20.74;ReadPosRankSum=3.420;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:4,214:218:99:4542,528,0 chrIII 56210 . T C 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.332;QD=21.80;ReadPosRankSum=1.677;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4099,474,0 chrIII 56873 . G A 578 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.65;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:69:611,69,0 chrIII 56968 . G A 934 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.58;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:967,108,0 chrIII 56979 . G A 734 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=19.84;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:767,87,0 chrIII 57303 . A G 1257 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=10.2041;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=18.76;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1290,159,0 chrIII 57389 . G A 2222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.062;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.577;QD=23.15;ReadPosRankSum=1.322;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2255,235,0 chrIII 57542 . A G 3556.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.68;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3556,417,0 chrIII 57639 . A G 4737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=216;Dels=0.00;FS=7.888;HaplotypeScore=10.2347;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.988;QD=21.93;ReadPosRankSum=2.415;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4737,546,0 chrIII 57857 . G A 6334.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.03;SB=-3.208e+03 GT:AD:DP:GQ:PL 1/1:0,272:275:99:6334,714,0 chrIII 59028 . G T 5752.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=14.7986;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.07;SB=-3.125e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5752,639,0 chrIII 59117 . C A 4607.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=16.4387;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.36;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4607,519,0 chrIII 59171 . A G 5412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=243;Dels=0.00;FS=6.749;HaplotypeScore=17.1712;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.066;QD=22.27;ReadPosRankSum=2.429;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:2,241:243:99:5412,627,0 chrIII 59465 . A T 5315.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=15.5763;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.62;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5315,603,0 chrIII 59925 . G A 4171.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.92;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4171,462,0 chrIII 60198 . T C 5238.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=238;Dels=0.00;FS=2.660;HaplotypeScore=22.7043;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.494;QD=22.01;ReadPosRankSum=2.387;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:2,234:237:99:5238,615,0 chrIII 60354 . C G 5307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=251;Dels=0.00;FS=3.651;HaplotypeScore=25.8407;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.634;QD=21.14;ReadPosRankSum=-0.196;SB=-2.726e+03 GT:AD:DP:GQ:PL 1/1:1,247:251:99:5307,615,0 chrIII 60463 . G A 5964.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=20.7070;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.51;SB=-3.185e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:5964,687,0 chrIII 60687 . T C 3346.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=19.01;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3346,401,0 chrIII 60707 . G A 3212.98 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.24;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3246,366,0 chrIII 60839 . C G 2962 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2869;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.31;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,134:139:99:2995,365,0 chrIII 60880 . A G 2990 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.62;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3023,362,0 chrIII 60904 . G A 2727 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.20;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2760,312,0 chrIII 60997 . G A 3205.99 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.58;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3239,366,0 chrIII 61453 . A G 3049 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3082,351,0 chrIII 61855 . C T 4272.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.60;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4272,474,0 chrIII 61894 . G A 3705.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.92;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3705,429,0 chrIII 61954 . G A 4724.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.39;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4724,525,0 chrIII 62244 . G A 5040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.451;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=14.9989;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.933;QD=21.27;ReadPosRankSum=-0.252;SB=-2.945e+03 GT:AD:DP:GQ:PL 1/1:1,235:237:99:5040,549,0 chrIII 62386 . A G 6541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=297;Dels=0.00;FS=6.931;HaplotypeScore=10.0034;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.904;QD=22.02;ReadPosRankSum=2.375;SB=-3.408e+03 GT:AD:DP:GQ:PL 1/1:2,295:297:99:6541,767,0 chrIII 62464 . C T 5626.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=25.1831;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.72;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:0,256:259:99:5626,657,0 chrIII 62698 . T A 2014 filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=16.0637;MLEAC=2;MLEAF=1.00;MQ=61.09;MQ0=0;QD=17.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2047,234,0 chrIII 63257 . A G 6256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=295;Dels=0.00;FS=2.570;HaplotypeScore=15.7076;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.757;QD=21.21;ReadPosRankSum=2.942;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:3,291:295:99:6256,711,0 chrIII 63436 . A T 4070.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.6751;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=19.20;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4070,456,0 chrIII 63461 . C T 3405.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=17.11;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3405,393,0 chrIII 63488 . G A 3881.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.0879;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.64;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3881,438,0 chrIII 63611 . T C 5294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=250;Dels=0.00;FS=3.633;HaplotypeScore=12.8220;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.063;QD=21.18;ReadPosRankSum=1.676;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:1,246:250:99:5294,597,0 chrIII 63878 . C G 4547.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.51;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4547,522,0 chrIII 63929 . C T 4610.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.7115;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.54;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4610,534,0 chrIII 64304 . C T 4199.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4199,486,0 chrIII 64391 . C T 1485 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=12.91;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:2,113:115:99:1518,174,0 chrIII 64503 . A G 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.356;QD=18.74;ReadPosRankSum=2.381;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2076,243,0 chrIII 65119 . T C 3518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.168;DP=167;Dels=0.00;FS=7.169;HaplotypeScore=13.7825;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.570;QD=21.07;ReadPosRankSum=2.420;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3518,389,0 chrIII 65266 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.04;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3324,375,0 chrIII 65580 . C G 4204.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.7554;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.41;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4204,486,0 chrIII 65645 . T A 4799.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.7805;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.52;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4799,540,0 chrIII 65725 . A C 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.981;QD=21.67;ReadPosRankSum=2.400;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3261,375,0 chrIII 66138 . G C 5458.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=9.8195;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.07;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,268:272:99:5458,653,0 chrIII 66156 . A G 5605.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.84;SB=-3.040e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5605,645,0 chrIII 66375 . C T 4910.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=17.1545;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.02;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4910,564,0 chrIII 66729 . G A 3958.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.5539;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.61;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3958,453,0 chrIII 66765 . A G 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=186;Dels=0.00;FS=5.569;HaplotypeScore=9.6776;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.005;QD=20.55;ReadPosRankSum=2.930;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:3822,447,0 chrIII 66906 . A T 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=152;Dels=0.00;FS=2.726;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.106;QD=21.24;ReadPosRankSum=2.385;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3261,369,0 chrIII 66930 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=20.83;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2782,321,0 chrIII 67277 . G A 4118.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.90;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4118,462,0 chrIII 67668 . A G 4106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.707;DP=211;Dels=0.00;FS=6.081;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-0.880;QD=19.46;ReadPosRankSum=2.966;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:3,206:210:99:4106,497,0 chrIII 67764 . C T 3038 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.67;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3071,345,0 chrIII 67820 . T C 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=137;Dels=0.00;FS=6.083;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;MQRankSum=-0.890;QD=17.71;ReadPosRankSum=2.919;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2459,288,0 chrIII 67844 . G A 2573 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.14;MQ0=0;QD=16.82;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2606,300,0 chrIII 67854 . A G 2455 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=14.97;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2488,297,0 chrIII 67872 . G T 2481 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;QD=14.42;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2514,282,0 chrIII 67884 . A C 2661 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=14.46;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:2694,306,0 chrIII 67932 . C T 2677 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.1599;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=16.32;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2710,309,0 chrIII 68058 . T C 4208.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=22.15;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4208,480,0 chrIII 68070 . T G 3982.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.3225;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=20.96;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:3982,453,0 chrIII 68424 . G A 4064.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4064,453,0 chrIII 68556 . T C 5272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.1756;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.701;QD=23.86;ReadPosRankSum=1.716;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:5272,606,0 chrIII 68611 . C T 4693.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.35;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4693,528,0 chrIII 68830 . T C 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=3.184;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-1.138;QD=18.25;ReadPosRankSum=1.698;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:3742,449,0 chrIII 68852 . A G 3874.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=19.67;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3874,464,0 chrIII 68956 . T C 4337.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.71;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4337,504,0 chrIII 69091 . A G 4518.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=17.2865;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.56;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4518,545,0 chrIII 69652 . T C 5302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=274;Dels=0.00;FS=7.935;HaplotypeScore=17.2781;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=2.205;QD=19.35;ReadPosRankSum=2.404;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:2,270:274:99:5302,635,0 chrIII 69718 . A G 4581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-0.220;QD=19.33;ReadPosRankSum=1.673;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:1,235:237:99:4581,522,0 chrIII 69745 . C T 4019.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.9171;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.10;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4019,459,0 chrIII 69976 . T C 4432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=227;Dels=0.00;FS=3.288;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.211;QD=19.52;ReadPosRankSum=1.671;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4432,501,0 chrIII 70158 . G T 4498.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.80;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4498,510,0 chrIII 70203 . C T 5382.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=21.4722;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.30;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5382,597,0 chrIII 70314 . C A 4909.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.6949;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.62;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4909,558,0 chrIII 70491 . T C 5107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=245;Dels=0.00;FS=10.687;HaplotypeScore=17.4553;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-0.831;QD=20.84;ReadPosRankSum=2.922;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:3,241:245:99:5107,614,0 chrIII 70770 . G A 4224.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.11;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4224,489,0 chrIII 70785 . C T 4495.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.07;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4495,504,0 chrIII 71079 . T C 7875.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=367;Dels=0.00;FS=9.991;HaplotypeScore=16.2197;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.746;QD=21.46;ReadPosRankSum=2.959;SB=-4.217e+03 GT:AD:DP:GQ:PL 1/1:3,364:367:99:7875,900,0 chrIII 71223 . G A 4122.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.4597;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=20.51;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4122,465,0 chrIII 71229 . G C 3666.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=18.33;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3666,426,0 chrIII 71241 . G A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=18.70;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3347,378,0 chrIII 71247 . C T 3081 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=16.84;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3114,363,0 chrIII 71310 . C T 2979 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8794;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=17.84;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3012,351,0 chrIII 71382 . C G 2960 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=128.0884;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=19.60;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,144:151:99:2993,345,0 chrIII 71636 . T A 3107 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.43;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3140,354,0 chrIII 72190 . T C 3108 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.00;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3141,375,0 chrIII 72233 . A T 3890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=3.547;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.262;QD=22.49;ReadPosRankSum=1.672;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3890,435,0 chrIII 72786 . T C 5075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.016;QD=22.66;ReadPosRankSum=2.406;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:5075,591,0 chrIII 72895 . G T 5323.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-2.970e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5323,597,0 chrIII 73159 . G A 3019 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.54;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3052,345,0 chrIII 73233 . A G 3468.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.64;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3468,408,0 chrIII 73255 . T A 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.8545;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=0.621;QD=18.93;ReadPosRankSum=1.152;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3331,381,0 chrIII 74002 . T C 4022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=187;Dels=0.00;FS=6.239;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.614;QD=21.51;ReadPosRankSum=2.423;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:2,180:187:99:4022,465,0 chrIII 74031 . C T 3698.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.25;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3698,426,0 chrIII 74052 . A G 3655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=179;Dels=0.00;FS=7.777;HaplotypeScore=4.3310;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.683;QD=20.42;ReadPosRankSum=2.367;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3655,423,0 chrIII 74074 . T C 4171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.1484;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=0.431;QD=20.35;ReadPosRankSum=1.631;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4171,480,0 chrIII 74107 . G A 3620.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.67;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3620,399,0 chrIII 74202 . C T 3898.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.8772;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.41;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3898,444,0 chrIII 74505 . C T 2746 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8120;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=18.19;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2779,324,0 chrIII 74577 . T C 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.500;DP=150;Dels=0.00;FS=4.023;HaplotypeScore=13.2011;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.314;QD=20.37;ReadPosRankSum=-0.546;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3089,357,0 chrIII 75004 . G C 5106.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=19.3004;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.01;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:1,226:232:99:5106,597,0 chrIII 75202 . G A 5254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.4669;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-0.029;QD=21.71;ReadPosRankSum=0.830;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:5254,606,0 chrIII 75211 . T C 4686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=237;Dels=0.00;FS=4.573;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-0.287;QD=19.77;ReadPosRankSum=1.703;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:1,234:237:99:4686,557,0 chrIII 75220 . G A 5086.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.28;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5086,579,0 chrIII 75455 . C T 3138 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1424;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=21.20;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3171,357,0 chrIII 75464 . T A 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=3.206;HaplotypeScore=102.1722;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-1.681;QD=19.43;ReadPosRankSum=1.681;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2675,306,0 chrIII 75546 . G A 2952 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;QD=23.06;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2985,345,0 chrIII 75863 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.6318;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.35;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3139,354,0 chrIII 76147 . T G 2993 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.2711;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.44;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,149:154:99:3026,362,0 chrIII 76198 . A T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.1308;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.02;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3633,417,0 chrIII 76522 . A G 6262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=284;Dels=0.00;FS=8.860;HaplotypeScore=20.0958;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.004;QD=22.05;ReadPosRankSum=2.397;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:2,280:284:99:6262,755,0 chrIII 76973 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.6215;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.71;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3648,408,0 chrIII 77317 . T C 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=206;Dels=0.00;FS=2.697;HaplotypeScore=21.5563;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.174;QD=22.20;ReadPosRankSum=2.426;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4574,537,0 chrIII 77350 . G A 6449.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.55;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,284:286:99:6449,744,0 chrIII 77505 . A G 6146.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=17.3719;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.49;SB=-3.409e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:6146,711,0 chrIII 77596 . A G 6475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=313;Dels=0.00;FS=2.704;HaplotypeScore=20.5810;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.207;QD=20.69;ReadPosRankSum=2.426;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:2,311:313:99:6475,758,0 chrIII 77645 . T C 5403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=282;Dels=0.00;FS=13.678;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.932;QD=19.16;ReadPosRankSum=2.911;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:3,278:282:99:5403,644,0 chrIII 77849 . C T 3868.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.0683;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.25;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3868,432,0 chrIII 77866 . T A 3127 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.9394;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=17.77;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3160,360,0 chrIII 77900 . A G 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=186;Dels=0.00;FS=2.983;HaplotypeScore=15.0549;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.948;QD=19.22;ReadPosRankSum=2.423;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:3574,411,0 chrIII 77957 . T C 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=207;Dels=0.00;FS=3.014;HaplotypeScore=13.4187;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.377;QD=21.10;ReadPosRankSum=2.414;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:2,204:207:99:4367,504,0 chrIII 78705 . G T 2509 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.81;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2542,282,0 chrIII 78745 . A G 2644 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.59;MQ0=0;QD=21.67;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2677,309,0 chrIII 78844 . A G 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=131;Dels=0.00;FS=14.117;HaplotypeScore=11.2340;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.085;QD=20.69;ReadPosRankSum=2.854;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2743,332,0 chrIII 78909 . C G 2866 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.30;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2899,327,0 chrIII 79012 . T C 4555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=199;Dels=0.00;FS=5.896;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.640;QD=22.89;ReadPosRankSum=2.904;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:3,195:199:99:4555,534,0 chrIII 79096 . G T 6102.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.12;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:6102,687,0 chrIII 79170 . G A 5799.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.20;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5799,672,0 chrIII 79392 . G A 5990.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=26.6705;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.94;SB=-3.050e+03 GT:AD:DP:GQ:PL 1/1:0,284:286:99:5990,678,0 chrIII 79460 . A G 4510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.206;DP=199;Dels=0.00;FS=5.236;HaplotypeScore=15.5806;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.320;QD=22.66;ReadPosRankSum=3.416;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:4,195:199:99:4510,519,0 chrIII 79758 . A G 2416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=125;Dels=0.00;FS=6.561;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.895;QD=19.33;ReadPosRankSum=2.351;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2449,296,0 chrIII 79797 . T C 3296.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.13;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3296,375,0 chrIII 80460 . G C 3633.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.9422;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.15;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3633,417,0 chrIII 80844 . A G 4253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=196;Dels=0.00;FS=3.216;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-1.217;QD=21.70;ReadPosRankSum=1.679;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4253,512,0 chrIII 80913 . T C 2205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.093;DP=133;Dels=0.00;FS=3.001;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-1.305;QD=16.58;ReadPosRankSum=2.299;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:2,129:133:99:2238,270,0 chrIII 80922 . G A 1842 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=16.30;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1875,216,0 chrIII 81410 . A T 3278.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.92;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3278,375,0 chrIII 81442 . A T 2722 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.03;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2755,315,0 chrIII 81444 . C T 2819 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.31;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2852,324,0 chrIII 81561 . C T 3905.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.52;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3905,441,0 chrIII 81693 . A G 3931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=180;Dels=0.00;FS=9.331;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.744;QD=21.84;ReadPosRankSum=2.949;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:3,174:180:99:3931,450,0 chrIII 81797 . G A 2865 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=19.36;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2898,324,0 chrIII 81816 . G A 2450 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=15.61;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2483,282,0 chrIII 81829 . G A 2304 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=15.36;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2337,264,0 chrIII 81853 . T C 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=3.509;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;MQRankSum=0.250;QD=14.23;ReadPosRankSum=1.669;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:2396,273,0 chrIII 81869 . A G 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=0.492;QD=14.45;ReadPosRankSum=1.689;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:2389,273,0 chrIII 81921 . T A 3402.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.67;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3402,384,0 chrIII 82074 . T C 2494 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=20.96;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2527,291,0 chrIII 82131 . G C 1630 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.3458;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=21.45;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1663,189,0 chrIII 82143 . A T 1388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=1.093;QD=21.35;ReadPosRankSum=1.572;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1421,165,0 chrIII 82302 . A G 471 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=11.77;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:57:504,57,0 chrIII 82315 . G A 413 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=12.15;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:51:446,51,0 chrIII 82413 . C T 405 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.62;MQ0=0;QD=19.29;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:51:438,51,0 chrIII 82415 . C T 397 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.06;MQ0=0;QD=20.89;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:51:430,51,0 chrIII 82443 . T C 286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=9.8716;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;MQRankSum=-0.306;QD=16.82;ReadPosRankSum=1.531;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:1,16:17:39:319,39,0 chrIII 82445 . A C 290 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=9.8716;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;QD=17.06;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:39:323,39,0 chrIII 82554 . T C 379 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=22.29;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,16:17:48:412,48,0 chrIII 82589 . T G 387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.14;MQ0=0;MQRankSum=-0.578;QD=18.43;ReadPosRankSum=1.569;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:1,20:21:48:420,48,0 chrIII 82623 . C T 627 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.01;MQ0=0;QD=22.39;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:75:660,75,0 chrIII 82632 . A G 586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=3.332;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.01;MQ0=0;MQRankSum=0.248;QD=20.93;ReadPosRankSum=1.609;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:72:619,72,0 chrIII 82666 . G C 680 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.18;MQ0=0;QD=21.94;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:87:713,87,0 chrIII 82701 . G A 180.03 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=15.00;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:24:213,24,0 chrIII 83119 . A G 1630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.526;DP=84;Dels=0.00;FS=3.928;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;MQRankSum=1.196;QD=19.40;ReadPosRankSum=0.990;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1663,192,0 chrIII 83134 . G A 1836 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=17.8735;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=20.40;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1869,213,0 chrIII 83222 . A G 2676 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=19.68;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2709,332,0 chrIII 83246 . A G 2365 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=18.92;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2398,291,0 chrIII 83389 . T C 3052 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.19;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3085,371,0 chrIII 83503 . C G 2154 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=14.6773;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.73;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2187,252,0 chrIII 83597 . G T 2634 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.0284;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.71;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2667,300,0 chrIII 84195 . A G 1960 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.0633;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=0;MQRankSum=2.400;QD=19.80;ReadPosRankSum=2.400;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1993,234,0 chrIII 84242 . T C 679 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.356;DP=52;Dels=0.00;FS=105.723;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.45;MQ0=2;MQRankSum=5.012;QD=13.06;ReadPosRankSum=-3.724;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:13,39:52:90:712,90,0 chrIII 84468 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.36;MQ0=15;QD=0.79;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:15,10:25:6:51,6,0 chrIII 84495 . A G 198.01 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.05;MQ0=0;QD=9.43;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:27:231,27,0 chrIII 84553 . A T 204.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;DP=106;Dels=0.00;FS=52.302;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.70;MQ0=75;MQRankSum=-2.605;QD=1.92;ReadPosRankSum=1.370;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:76,30:106:62:234,0,62 chrIII 84580 . T C 126.98 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;DP=94;Dels=0.00;FS=12.788;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.55;MQ0=75;MQRankSum=-0.822;QD=1.35;ReadPosRankSum=1.004;SB=-3.988e+00 GT:AD:DP:GQ:PL 0/1:3,91:94:3:156,0,3 chrIII 84703 . A C 1590 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.62;MQ0=0;QD=23.04;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1623,189,0 chrIII 84731 . A G 1755 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.15;MQ0=0;QD=23.09;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1788,213,0 chrIII 84803 . A G 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DP=10;Dels=0.00;FS=3.522;HaplotypeScore=11.3058;MLEAC=1;MLEAF=0.500;MQ=29.87;MQ0=1;MQRankSum=2.219;QD=5.80;ReadPosRankSum=1.307;SB=0.128 GT:AD:DP:GQ:PL 0/1:6,4:10:35:88,0,35 chrIII 84805 . T C 57.42 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=16.7059;MLEAC=1;MLEAF=0.500;MQ=25.10;MQ0=2;MQRankSum=2.392;QD=3.83;ReadPosRankSum=1.003;SB=-2.846e-01 GT:AD:DP:GQ:PL 0/1:11,4:15:7:87,0,7 chrIII 85096 . T C 5523.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=798;Dels=0.00;FS=13.168;HaplotypeScore=37.7196;MLEAC=2;MLEAF=1.00;MQ=18.63;MQ0=475;MQRankSum=2.419;QD=6.92;ReadPosRankSum=1.784;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:21,774:798:99:5523,653,0 chrIII 85133 . G A 5137.01 filter AC=2;AF=1.00;AN=2;DP=446;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.90;MQ0=250;QD=11.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,444:446:99:5137,588,0 chrIII 85136 . C A 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;DP=473;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=23.21;MQ0=277;MQRankSum=1.008;QD=0.05;ReadPosRankSum=-0.804;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:434,39:473:54:54,0,3819 chrIII 87805 . C T 349 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=18.52;MQ0=17;QD=3.92;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,89:89:45:382,45,0 chrIII 88183 . G C 956.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.277;DP=213;Dels=0.00;FS=58.690;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=18.65;MQ0=92;MQRankSum=7.168;QD=4.49;ReadPosRankSum=2.640;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,58:213:99:986,0,354 chrIII 88196 . C A 1205.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.27;MQ0=110;MQRankSum=-0.288;QD=5.29;ReadPosRankSum=-0.593;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:149,79:228:99:1235,0,448 chrIII 88204 . T G 1301.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.823;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.79;MQ0=144;MQRankSum=1.201;QD=4.52;ReadPosRankSum=0.037;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:180,108:288:99:1331,0,605 chrIII 90723 . T C 143.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.886;DP=156;Dels=0.00;FS=56.907;HaplotypeScore=101.9061;MLEAC=1;MLEAF=0.500;MQ=15.16;MQ0=88;MQRankSum=-4.049;QD=0.92;ReadPosRankSum=2.722;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,47:156:99:173,0,353 chrIII 90724 . T A 207.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;DP=155;Dels=0.00;FS=4.448;HaplotypeScore=101.9061;MLEAC=1;MLEAF=0.500;MQ=15.21;MQ0=87;MQRankSum=-1.066;QD=1.34;ReadPosRankSum=-0.328;SB=-2.400e+02 GT:AD:DP:GQ:PL 0/1:91,64:155:99:237,0,303 chrIII 90807 . C T 1362 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=42.61;MQ0=0;QD=16.41;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1395,165,0 chrIII 91002 . C T 2579 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=22.62;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2612,300,0 chrIII 91704 . T C 4633.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=16.43;SB=-3.364e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:4633,531,0 chrIII 91773 . C T 4278.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=26.7457;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.50;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4278,483,0 chrIII 92106 . T C 5123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=235;Dels=0.00;FS=2.761;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.102;QD=21.80;ReadPosRankSum=2.408;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:2,233:235:99:5123,582,0 chrIII 92187 . C T 5819.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.42;SB=-3.470e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:5819,651,0 chrIII 92193 . T C 5393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=1.100;QD=19.68;ReadPosRankSum=1.681;SB=-3.201e+03 GT:AD:DP:GQ:PL 1/1:1,273:274:99:5393,635,0 chrIII 92292 . G A 5065.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=16.7105;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.41;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5065,576,0 chrIII 92716 . C T 2521 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.01;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2554,285,0 chrIII 93455 . A G 4556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=226;Dels=0.00;FS=3.015;HaplotypeScore=19.9296;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.027;QD=20.16;ReadPosRankSum=2.417;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:2,223:226:99:4556,545,0 chrIII 94413 . G A 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.628;QD=21.98;ReadPosRankSum=-0.383;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2517,282,0 chrIII 94470 . T G 1723 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.73;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1756,207,0 chrIII 94491 . T G 1200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.676;DP=78;Dels=0.00;FS=12.727;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.156;QD=15.38;ReadPosRankSum=2.910;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:3,75:78:99:1233,141,0 chrIII 94576 . G A 3631.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.22;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3631,402,0 chrIII 94897 . T C 4459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=231;Dels=0.00;FS=3.493;HaplotypeScore=8.8512;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.851;QD=19.30;ReadPosRankSum=1.717;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:1,227:231:99:4459,530,0 chrIII 94915 . C T 5131.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=17.8616;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.28;SB=-3.082e+03 GT:AD:DP:GQ:PL 1/1:0,250:253:99:5131,573,0 chrIII 94969 . C T 6882.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=11.2154;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.27;SB=-3.487e+03 GT:AD:DP:GQ:PL 1/1:0,306:309:99:6882,774,0 chrIII 95062 . C T 6241.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=12.9496;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.20;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:6241,714,0 chrIII 95658 . G T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.2323;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.82;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3831,432,0 chrIII 95686 . A G 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.311;DP=167;Dels=0.00;FS=5.257;HaplotypeScore=6.6547;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.238;QD=20.20;ReadPosRankSum=3.353;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:4,161:167:99:3373,393,0 chrIII 95815 . C T 3345.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.91;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3345,387,0 chrIII 95906 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.1224;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.91;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3264,363,0 chrIII 96055 . A G 3626.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.0101;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.66;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3626,414,0 chrIII 96272 . A G 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=3.495;HaplotypeScore=10.1390;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.850;QD=21.87;ReadPosRankSum=1.646;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3587,428,0 chrIII 97696 . A G 3028 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.84;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3061,354,0 chrIII 98358 . A G 3998.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.85;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3998,459,0 chrIII 99107 . G T 3307.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3307,375,0 chrIII 99163 . T C 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.569;QD=21.40;ReadPosRankSum=1.683;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3029,354,0 chrIII 99209 . A G 3734.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.71;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3734,429,0 chrIII 99262 . T G 4421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.4036;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.043;QD=21.67;ReadPosRankSum=1.715;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4421,516,0 chrIII 99380 . A C 3479.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.4449;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.34;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,159:163:99:3479,402,0 chrIII 99392 . C T 3583.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.58;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3583,399,0 chrIII 99481 . T C 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=4.559;HaplotypeScore=9.5787;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-1.212;QD=20.18;ReadPosRankSum=1.713;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3633,440,0 chrIII 99534 . G A 3726.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.3772;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=19.93;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3726,417,0 chrIII 99547 . C T 3484.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=18.63;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3484,390,0 chrIII 99648 . A G 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.2123;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-1.494;QD=21.94;ReadPosRankSum=1.645;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3554,408,0 chrIII 99743 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.0717;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.05;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3253,369,0 chrIII 99868 . T A 3129 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=11.5979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3162,357,0 chrIII 100138 . T A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.65;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3334,375,0 chrIII 100295 . A G 2118 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2151,255,0 chrIII 100585 . A G 2449 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.7634;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2482,285,0 chrIII 101152 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2722,306,0 chrIII 101527 . C A 3727.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.9712;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.42;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3727,429,0 chrIII 101597 . A G 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=178;Dels=0.00;FS=3.541;HaplotypeScore=17.7386;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.776;QD=21.30;ReadPosRankSum=1.692;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,173:178:99:3792,452,0 chrIII 101813 . T G 2754 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.3039;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.18;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2787,324,0 chrIII 102360 . A G 4452.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4452,542,0 chrIII 102398 . C T 4764.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.1604;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.95;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4764,543,0 chrIII 102477 . C T 3947.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.5092;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3947,438,0 chrIII 102669 . C T 3966.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.8744;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3966,456,0 chrIII 102819 . C T 2764 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.18;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2797,312,0 chrIII 103499 . C T 4811.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4811,546,0 chrIII 103556 . T C 4554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.9716;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.189;QD=21.89;ReadPosRankSum=1.715;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,203:208:99:4554,539,0 chrIII 103593 . A G 4281.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.5184;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.41;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4281,527,0 chrIII 103649 . T C 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.583;QD=20.34;ReadPosRankSum=1.697;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4047,465,0 chrIII 103757 . A C 5726.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.45;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5726,654,0 chrIII 103813 . G A 5458.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.49;SB=-2.913e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:5458,615,0 chrIII 103955 . G A 6974.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.73;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:0,321:321:99:6974,786,0 chrIII 104326 . C T 4663.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.3970;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.39;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,214:218:99:4663,528,0 chrIII 104476 . G A 597 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.01;FS=0.000;HaplotypeScore=118.4886;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=2.79;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:72:630,72,0 chrIII 104496 . G T 3108 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=15.2566;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=13.17;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:3141,354,0 chrIII 105047 . G A 5230.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=20.6329;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.84;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:0,247:251:99:5230,591,0 chrIII 105155 . C T 7513.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=14.4541;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.63;SB=-3.301e+03 GT:AD:DP:GQ:PL 1/1:0,332:332:99:7513,840,0 chrIII 105234 . G A 8541.01 filter AC=2;AF=1.00;AN=2;DP=399;Dels=0.00;FS=0.000;HaplotypeScore=34.8300;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.41;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,397:399:99:8541,963,0 chrIII 105350 . T C 9573.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=461;Dels=0.00;FS=5.857;HaplotypeScore=26.1764;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.123;QD=20.77;ReadPosRankSum=2.906;SB=-5.112e+03 GT:AD:DP:GQ:PL 1/1:3,455:461:99:9573,1098,0 chrIII 105854 . G T 12574.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=563;Dels=0.00;FS=3.244;HaplotypeScore=36.8654;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=1.319;QD=22.33;ReadPosRankSum=-0.060;SB=-6.923e+03 GT:AD:DP:GQ:PL 1/1:1,559:563:99:12574,1422,0 chrIII 106362 . G C 5162.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=14.1557;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=18.50;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,274:279:99:5162,620,0 chrIII 106374 . C T 5344.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.24;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,262:264:99:5344,609,0 chrIII 106818 . C T 4230.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.2492;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.15;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4230,477,0 chrIII 106895 . C G 3213.98 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.21;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3247,369,0 chrIII 106931 . C T 3116 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.05;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3149,357,0 chrIII 107061 . T C 4039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.659;DP=197;Dels=0.00;FS=4.673;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.306;QD=20.50;ReadPosRankSum=3.746;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:5,192:197:99:4039,462,0 chrIII 107067 . T C 3823.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.8881;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=19.12;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3823,444,0 chrIII 108225 . G A 6274.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=19.8501;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=19.85;SB=-4.051e+03 GT:AD:DP:GQ:PL 1/1:0,314:316:99:6274,696,0 chrIII 108227 . T A 6002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=316;Dels=0.00;FS=3.151;HaplotypeScore=20.7645;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=0.563;QD=18.99;ReadPosRankSum=1.688;SB=-3.738e+03 GT:AD:DP:GQ:PL 1/1:1,315:316:99:6002,687,0 chrIII 108293 . A G 4167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=244;Dels=0.00;FS=9.304;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=1.270;QD=17.08;ReadPosRankSum=2.971;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:3,240:244:99:4167,474,0 chrIII 108503 . T C 5001.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=23.1414;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.75;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5001,596,0 chrIII 108620 . G C 4102.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.5140;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.36;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4102,483,0 chrIII 108790 . G A 1788 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=18.82;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1821,210,0 chrIII 108793 . A G 1776 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=17.94;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1809,213,0 chrIII 108925 . C T 425 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=10.37;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:51:458,51,0 chrIII 108927 . T A 463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.410;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=0.040;QD=10.29;ReadPosRankSum=1.652;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:57:496,57,0 chrIII 108983 . G A 1915 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=19.95;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,92:96:99:1948,222,0 chrIII 109046 . A G 2062 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.98;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:2095,237,0 chrIII 109115 . G T 2583 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=23.48;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2616,294,0 chrIII 109290 . A C 3541.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.13;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3541,422,0 chrIII 109320 . G A 3774.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.4604;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.20;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3774,429,0 chrIII 109704 . G C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3332,381,0 chrIII 109776 . T C 2343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.673;DP=114;Dels=0.00;FS=5.990;HaplotypeScore=9.0895;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.496;QD=20.55;ReadPosRankSum=2.868;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2376,276,0 chrIII 109851 . T C 3442.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3442,393,0 chrIII 110882 . A G 3551.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.83;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3551,399,0 chrIII 111371 . T C 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.215;DP=124;Dels=0.00;FS=9.161;HaplotypeScore=6.7950;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-1.077;QD=21.19;ReadPosRankSum=3.272;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:4,119:124:99:2661,306,0 chrIII 111396 . T C 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=125;Dels=0.00;FS=3.010;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-1.704;QD=18.96;ReadPosRankSum=1.676;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2403,279,0 chrIII 111404 . G A 2567 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.05;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2600,291,0 chrIII 111618 . C T 3640.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.18;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3640,411,0 chrIII 111695 . T G 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=3.045;HaplotypeScore=9.1215;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.510;QD=20.44;ReadPosRankSum=1.704;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2588,300,0 chrIII 112101 . C A 2741 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.03;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2774,315,0 chrIII 112631 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=3.411;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.095;QD=24.47;ReadPosRankSum=1.681;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3353,384,0 chrIII 112707 . A C 3183 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.40;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3216,372,0 chrIII 112760 . A G 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=159;Dels=0.00;FS=3.294;HaplotypeScore=11.9844;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.855;QD=22.63;ReadPosRankSum=1.337;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3598,411,0 chrIII 112907 . G A 3013 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.15;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3046,351,0 chrIII 112988 . G A 3060 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.0130;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.82;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3093,354,0 chrIII 113059 . C A 2844 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.5547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.22;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2877,324,0 chrIII 113166 . G A 2799 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.76;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2832,321,0 chrIII 113217 . A G 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=3.596;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=0.555;QD=22.89;ReadPosRankSum=1.698;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2391,279,0 chrIII 113279 . T A 1763 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.90;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1796,204,0 chrIII 113386 . G A 2580 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.4347;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.43;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2613,297,0 chrIII 113543 . A G 2199 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2232,258,0 chrIII 113605 . A G 2635 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.96;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2668,309,0 chrIII 113636 . A C 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=0.939;QD=19.65;ReadPosRankSum=1.679;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2607,312,0 chrIII 113643 . G C 2757 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.55;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2790,321,0 chrIII 113697 . C A 3096 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.50;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3129,357,0 chrIII 113781 . C T 3008 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.6103;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.64;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3041,345,0 chrIII 113902 . G A 2951 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=21.70;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2984,339,0 chrIII 113907 . G A 2573 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=18.64;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2606,303,0 chrIII 113921 . A T 2388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=-1.704;QD=19.41;ReadPosRankSum=1.704;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2421,276,0 chrIII 113952 . C G 2242 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.08;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,120:124:99:2275,261,0 chrIII 114025 . G C 2807 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.11;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2840,324,0 chrIII 114169 . G A 2508 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.95;MQ0=0;QD=23.89;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2541,297,0 chrIII 114184 . C T 2127 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=85.0527;MLEAC=2;MLEAF=1.00;MQ=40.18;MQ0=0;QD=23.12;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2160,252,0 chrIII 114243 . T C 889 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=21.17;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:922,108,0 chrIII 114262 . G A 918 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=19.12;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:951,111,0 chrIII 114298 . A T 1150 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.02;MQ0=0;QD=18.85;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1183,129,0 chrIII 114307 . A G 1075 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.22;MQ0=0;QD=16.54;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1108,132,0 chrIII 114309 . A C 1146 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.78;MQ0=0;QD=17.91;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1179,132,0 chrIII 114343 . A G 1154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.730;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.8664;MLEAC=2;MLEAF=1.00;MQ=34.51;MQ0=0;MQRankSum=-1.443;QD=16.25;ReadPosRankSum=2.787;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:3,68:71:99:1187,138,0 chrIII 114354 . A G 1061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.365;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;MQRankSum=-1.680;QD=16.08;ReadPosRankSum=1.680;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1094,129,0 chrIII 114365 . T A 965 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:998,114,0 chrIII 114366 . G A 972 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1005,114,0 chrIII 114395 . G A 640 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:78:673,78,0 chrIII 114397 . T A 643 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:78:676,78,0 chrIII 114408 . A T 542 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=0;QD=18.07;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:66:575,66,0 chrIII 114452 . T C 350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=22;Dels=0.00;FS=3.424;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=0;MQRankSum=0.946;QD=15.91;ReadPosRankSum=1.576;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:1,21:22:45:383,45,0 chrIII 114454 . A G 351 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=0;QD=15.95;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:45:384,45,0 chrIII 114465 . T G 447 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.07;MQ0=0;QD=17.19;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:57:480,57,0 chrIII 114485 . A T 543 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=18.10;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:66:576,66,0 chrIII 114616 . C A 1274 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=19.30;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1307,144,0 chrIII 114620 . T C 1145 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=17.62;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1178,135,0 chrIII 114644 . A G 1031 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=15.39;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1064,123,0 chrIII 114679 . G C 1073 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=14.70;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1106,132,0 chrIII 114698 . A C 1026 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=16.29;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1059,126,0 chrIII 114714 . C T 1159 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=15.25;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1192,135,0 chrIII 114728 . C T 1321 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.85;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1354,153,0 chrIII 114762 . T C 1814 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.85;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1847,213,0 chrIII 114986 . G A 2240 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.8200;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=18.98;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2273,267,0 chrIII 115127 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=8.0074;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.92;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3324,381,0 chrIII 115183 . T C 2838 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.17;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2871,330,0 chrIII 115351 . T C 2585 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.19;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2618,303,0 chrIII 115547 . G A 2647 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.24;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2680,309,0 chrIII 115585 . G A 2605 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.05;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2638,300,0 chrIII 115623 . T C 2955 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.22;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2988,348,0 chrIII 115632 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.50;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2871,333,0 chrIII 115736 . A T 3152 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3185,366,0 chrIII 116011 . G T 2561 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=12.7461;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.70;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2594,297,0 chrIII 116146 . G A 1792 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=18.86;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1825,213,0 chrIII 116156 . A G 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=95;Dels=0.00;FS=2.931;HaplotypeScore=6.1224;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.039;QD=19.11;ReadPosRankSum=2.397;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:2,92:95:99:1848,213,0 chrIII 116224 . T G 3396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.9059;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.285;QD=23.26;ReadPosRankSum=1.708;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3396,390,0 chrIII 116293 . A T 2804 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.24;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2837,324,0 chrIII 116479 . A C 3163 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.12;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3196,369,0 chrIII 116641 . G A 2123 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2156,243,0 chrIII 116887 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.51;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2666,291,0 chrIII 116946 . A G 2125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=101;Dels=0.00;FS=6.088;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.541;QD=21.04;ReadPosRankSum=2.909;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:3,96:101:99:2158,249,0 chrIII 117035 . G C 2451 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.69;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2484,288,0 chrIII 117055 . G T 2648 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.5531;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.69;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2681,303,0 chrIII 117295 . G A 3360.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8403;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.55;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3360,384,0 chrIII 117376 . A G 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.504;QD=21.64;ReadPosRankSum=1.709;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3290,375,0 chrIII 117476 . A G 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=147;Dels=0.00;FS=6.294;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.463;QD=22.77;ReadPosRankSum=2.416;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3347,384,0 chrIII 117992 . C T 4229.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.7518;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.03;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4229,480,0 chrIII 118196 . C T 3158 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.39;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3191,360,0 chrIII 118342 . G A 2923 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.14;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2956,327,0 chrIII 118354 . T A 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=3.315;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-0.013;QD=21.28;ReadPosRankSum=1.654;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2863,321,0 chrIII 118412 . C G 2020 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.24;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2053,246,0 chrIII 118631 . G A 2270 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.93;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2303,267,0 chrIII 118719 . A G 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.891;QD=21.63;ReadPosRankSum=1.683;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3083,351,0 chrIII 119105 . T C 2933 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2966,354,0 chrIII 119474 . A C 1960 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=14.9785;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.63;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1993,234,0 chrIII 119587 . A G 2410 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2443,282,0 chrIII 119638 . T A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.0239;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.67;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3527,402,0 chrIII 119779 . T A 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.058;QD=23.52;ReadPosRankSum=1.709;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3505,390,0 chrIII 120133 . G A 4378.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.65;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4378,504,0 chrIII 120341 . C T 3011 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=19.30;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3044,339,0 chrIII 120342 . T C 2683 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=17.31;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2716,332,0 chrIII 120493 . A C 2368 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.93;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2401,279,0 chrIII 120818 . A G 2467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.299;QD=20.39;ReadPosRankSum=1.703;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2500,291,0 chrIII 121150 . T C 4497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.1077;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.661;QD=21.62;ReadPosRankSum=1.682;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4497,516,0 chrIII 121210 . G A 4026.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.41;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4026,456,0 chrIII 121408 . A G 4682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.505;DP=210;Dels=0.00;FS=11.970;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.264;QD=22.30;ReadPosRankSum=2.909;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:3,206:210:99:4682,527,0 chrIII 121843 . A G 4288.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.6281;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.93;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4288,492,0 chrIII 122182 . G T 2329 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=18.78;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2362,264,0 chrIII 122194 . A G 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=3.634;HaplotypeScore=5.7075;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.887;QD=19.26;ReadPosRankSum=1.705;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,126:130:99:2537,294,0 chrIII 122386 . G A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=19.29;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3376,393,0 chrIII 122393 . T C 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.558;QD=20.31;ReadPosRankSum=1.673;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3616,420,0 chrIII 122563 . C G 4597.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=18.4388;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.10;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,204:208:99:4597,525,0 chrIII 122778 . G C 3751.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=22.1153;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=17.13;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:3751,452,0 chrIII 122867 . G C 3180 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.38;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3213,366,0 chrIII 122952 . G A 4058.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.8121;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.29;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4058,459,0 chrIII 123001 . C T 4751.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.5725;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.89;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:4751,546,0 chrIII 123248 . T C 4538.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.6114;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.14;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4538,528,0 chrIII 123295 . A T 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.322;QD=21.95;ReadPosRankSum=1.568;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3710,411,0 chrIII 123494 . C T 3687.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.5290;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=19.51;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3687,420,0 chrIII 123688 . G C 3304.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.90;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3304,387,0 chrIII 123755 . T G 4916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=15.5473;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.097;QD=21.19;ReadPosRankSum=1.702;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:4916,584,0 chrIII 123908 . G T 4421.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=23.77;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4421,507,0 chrIII 124465 . A T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=2.55;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:49,6,0 chrIII 124665 . G A 3440.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.6545;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=21.50;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3440,387,0 chrIII 124677 . T C 3626.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=21.58;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3626,417,0 chrIII 124732 . G A 3444.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.80;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3444,390,0 chrIII 125001 . G A 2837 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.88;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2870,321,0 chrIII 125027 . A G 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=123;Dels=0.00;FS=6.570;HaplotypeScore=3.3213;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-1.530;QD=22.31;ReadPosRankSum=2.390;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2777,318,0 chrIII 125120 . T C 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=0.693;QD=20.15;ReadPosRankSum=1.679;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2653,320,0 chrIII 125134 . A G 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=128;Dels=0.00;FS=7.707;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-1.969;QD=21.63;ReadPosRankSum=2.277;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2802,318,0 chrIII 125688 . G C 3114 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3147,363,0 chrIII 125835 . T C 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=137;Dels=0.00;FS=7.662;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.027;QD=21.82;ReadPosRankSum=2.414;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3022,351,0 chrIII 126143 . A G 2423 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4419;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=18.36;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2456,291,0 chrIII 126152 . C T 2474 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=18.74;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2507,285,0 chrIII 126606 . A G 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=11.145;HaplotypeScore=7.5529;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.215;QD=22.16;ReadPosRankSum=2.364;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3224,389,0 chrIII 126802 . G A 4274.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=18.2508;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.48;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4274,486,0 chrIII 126856 . T C 3465.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=18.3611;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=21.79;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3465,399,0 chrIII 126871 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.768;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.624;QD=22.09;ReadPosRankSum=1.663;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3313,372,0 chrIII 126876 . T C 3038 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=20.67;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3071,354,0 chrIII 127056 . G C 3221.02 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=19.88;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3254,384,0 chrIII 127138 . G T 3941.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=16.3736;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.78;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3941,447,0 chrIII 127464 . A G 2874 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.1230;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.94;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2907,336,0 chrIII 127623 . G C 1993 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.43;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2026,237,0 chrIII 127692 . T A 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=88;Dels=0.00;FS=3.534;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.236;QD=19.81;ReadPosRankSum=1.693;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1776,201,0 chrIII 127695 . A G 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=0.487;QD=18.16;ReadPosRankSum=1.615;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,88:91:99:1686,198,0 chrIII 127715 . T C 1853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=102;Dels=0.00;FS=7.163;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-0.036;QD=18.17;ReadPosRankSum=2.401;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1886,228,0 chrIII 128021 . G C 1512 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.26;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1545,180,0 chrIII 128224 . T C 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.924;QD=22.08;ReadPosRankSum=1.694;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2020,234,0 chrIII 128266 . T C 1630 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.96;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1663,192,0 chrIII 128376 . T C 2596 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=21.11;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2629,306,0 chrIII 128401 . C T 2383 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=21.66;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2416,267,0 chrIII 128538 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=141;Dels=0.00;FS=3.036;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.148;QD=23.76;ReadPosRankSum=2.380;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3350,381,0 chrIII 128667 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.85;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3278,375,0 chrIII 128694 . G A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.77;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3392,375,0 chrIII 128766 . G C 3422.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5801;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.51;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3422,405,0 chrIII 128961 . T C 2706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-1.661;QD=18.41;ReadPosRankSum=1.708;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2739,321,0 chrIII 128979 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.03;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3017,348,0 chrIII 129036 . T C 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=173;Dels=0.00;FS=6.729;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=0.575;QD=18.48;ReadPosRankSum=2.393;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3230,384,0 chrIII 129054 . T C 3857.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.43;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3857,447,0 chrIII 129196 . A T 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=3.367;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.912;QD=20.72;ReadPosRankSum=1.641;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3183,360,0 chrIII 129252 . G C 3842.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.99;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3842,453,0 chrIII 129310 . T G 3585.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.34;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3585,411,0 chrIII 129336 . A T 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.139;QD=20.97;ReadPosRankSum=1.656;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2906,330,0 chrIII 129603 . T C 3802.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.47;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3802,435,0 chrIII 130263 . T C 2462 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=18.79;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2495,297,0 chrIII 130268 . G A 2657 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.26;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2690,303,0 chrIII 130372 . G A 2183 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.40;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2216,252,0 chrIII 130406 . T C 2015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=110;Dels=0.00;FS=5.863;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.706;QD=18.32;ReadPosRankSum=1.668;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2048,243,0 chrIII 130708 . T C 2815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.706;DP=124;Dels=0.00;FS=4.906;HaplotypeScore=11.7933;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.323;QD=22.70;ReadPosRankSum=3.771;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:5,119:124:99:2848,330,0 chrIII 130829 . A G 3101 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.40;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3134,380,0 chrIII 130940 . A G 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=149;Dels=0.00;FS=2.918;HaplotypeScore=9.4150;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.586;QD=20.97;ReadPosRankSum=2.384;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3158,383,0 chrIII 131085 . C T 3037 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.2862;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.85;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3070,348,0 chrIII 131111 . G A 2172 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.25;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2205,249,0 chrIII 131371 . A G 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.161;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.153;QD=19.34;ReadPosRankSum=1.685;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:2896,333,0 chrIII 131372 . T A 2989 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.33;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3022,336,0 chrIII 131576 . G T 3409.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=22.88;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3409,381,0 chrIII 131795 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.13;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3265,366,0 chrIII 131797 . A G 3190 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=18.88;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3223,372,0 chrIII 131861 . A G 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=0.482;QD=20.06;ReadPosRankSum=1.671;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3410,390,0 chrIII 131983 . T C 4346.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=24.28;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4346,495,0 chrIII 132020 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.25;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3271,378,0 chrIII 132065 . G C 2327 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.35;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2360,273,0 chrIII 133383 . G A 2676 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=13.5082;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.12;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2709,306,0 chrIII 133467 . C T 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.501;QD=21.59;ReadPosRankSum=-0.325;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3605,417,0 chrIII 133715 . G A 2943 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0748;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.48;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2976,339,0 chrIII 133913 . G A 3059 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3092,357,0 chrIII 134024 . C T 3487.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2630;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3487,399,0 chrIII 135380 . G A 4179.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4179,474,0 chrIII 135665 . T C 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=148;Dels=0.00;FS=6.790;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.652;QD=21.25;ReadPosRankSum=2.400;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3178,369,0 chrIII 135824 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=147;Dels=0.00;FS=3.040;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.848;QD=21.93;ReadPosRankSum=1.708;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3256,378,0 chrIII 136159 . C T 3583.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3583,408,0 chrIII 136232 . A G 2897 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.40;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2930,351,0 chrIII 136448 . A G 5257.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.63;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5257,644,0 chrIII 136718 . T C 4483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.249;DP=226;Dels=0.00;FS=17.802;HaplotypeScore=20.9075;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.590;QD=19.84;ReadPosRankSum=3.327;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:4,220:226:99:4483,545,0 chrIII 136789 . T C 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=146;Dels=0.00;FS=5.321;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.151;QD=20.36;ReadPosRankSum=1.659;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,142:146:99:3006,351,0 chrIII 136958 . C T 2685 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.48;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2718,303,0 chrIII 137021 . T C 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.634;QD=23.13;ReadPosRankSum=1.704;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2901,339,0 chrIII 137522 . C T 4175.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.7521;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.57;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4175,468,0 chrIII 138345 . G A 7200.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=10.4655;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-3.494e+03 GT:AD:DP:GQ:PL 1/1:0,316:319:99:7200,816,0 chrIII 139189 . G C 989 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.5355;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1022,117,0 chrIII 139298 . G A 1376 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.17;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1409,159,0 chrIII 139934 . T C 2885 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.03;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2918,345,0 chrIII 139959 . G A 2785 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.33;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2818,321,0 chrIII 140025 . G A 2903 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.41;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2936,324,0 chrIII 140121 . C T 3178 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.6209;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.62;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3211,369,0 chrIII 140286 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6329;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.49;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2827,324,0 chrIII 140422 . C T 2595 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=19.37;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2628,294,0 chrIII 140430 . G A 2503 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=18.01;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2536,288,0 chrIII 140466 . T C 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-1.508;QD=18.42;ReadPosRankSum=1.707;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2594,297,0 chrIII 140789 . C T 2933 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.95;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2966,339,0 chrIII 140790 . C A 2834 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.24;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2867,330,0 chrIII 140978 . T C 2140 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.38;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2173,252,0 chrIII 141174 . G A 2409 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2442,276,0 chrIII 141490 . A G 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=123;Dels=0.00;FS=6.107;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.435;QD=21.07;ReadPosRankSum=2.943;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2624,303,0 chrIII 141799 . T A 2843 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=12.7634;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.11;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2876,324,0 chrIII 142499 . G C 1757 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.69;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1790,204,0 chrIII 142587 . T C 1352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=3.369;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;MQRankSum=0.302;QD=21.12;ReadPosRankSum=1.622;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1385,156,0 chrIII 142629 . T C 1008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=47.16;MQ0=0;MQRankSum=0.200;QD=19.38;ReadPosRankSum=1.599;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1041,123,0 chrIII 142679 . A C 194.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.777;DP=48;Dels=0.00;FS=2.792;HaplotypeScore=28.5354;MLEAC=1;MLEAF=0.500;MQ=44.21;MQ0=0;MQRankSum=-0.828;QD=4.04;ReadPosRankSum=-1.304;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:34,14:48:99:224,0,112 chrIII 142779 . C A 999 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=35.49;MQ0=0;QD=14.07;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1032,120,0 chrIII 142785 . A G 970 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=34.08;MQ0=0;QD=14.48;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1003,117,0 chrIII 142789 . G T 905 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=33.09;MQ0=0;QD=13.92;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:938,108,0 chrIII 142794 . G A 664.05 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.214;DP=96;Dels=0.00;FS=14.842;HaplotypeScore=5.8057;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=0;MQRankSum=-0.414;QD=6.92;ReadPosRankSum=7.957;SB=-5.431e+02 GT:AD:DP:GQ:PL 1/1:37,59:96:22:697,22,0 chrIII 142805 . C A,T 407.02 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=37.3720;MLEAC=1,1;MLEAF=0.500,0.500;MQ=35.30;MQ0=0;QD=4.47;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/2:0,43,48:91:54:467,104,54,363,0,348 chrIII 142911 . T C 2005.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;DP=128;Dels=0.00;FS=13.454;HaplotypeScore=6.4149;MLEAC=1;MLEAF=0.500;MQ=49.44;MQ0=0;MQRankSum=3.947;QD=15.66;ReadPosRankSum=-0.403;SB=-5.680e+02 GT:AD:DP:GQ:PL 0/1:23,105:128:99:2035,0,209 chrIII 143316 . G A 3194 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.14;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3227,363,0 chrIII 143492 . T A 2993 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.94;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3026,342,0 chrIII 143575 . C G 2163 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=19.14;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2196,255,0 chrIII 143576 . A G 2171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=3.541;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=0.567;QD=19.21;ReadPosRankSum=1.640;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2204,252,0 chrIII 143625 . C T 2355 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.5732;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=18.99;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2388,273,0 chrIII 143843 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.3419;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.87;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3160,354,0 chrIII 144125 . C T 3618.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.0869;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.28;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3618,405,0 chrIII 144268 . A G 3725.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8772;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.03;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3725,429,0 chrIII 144432 . C T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.3966;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3475,396,0 chrIII 144548 . A G 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.2407;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.347;QD=22.66;ReadPosRankSum=2.387;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:2,115:119:99:2729,312,0 chrIII 145017 . C T 5841.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.32;SB=-3.008e+03 GT:AD:DP:GQ:PL 1/1:0,272:274:99:5841,663,0 chrIII 145055 . A G 7390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=339;Dels=0.00;FS=10.585;HaplotypeScore=14.8281;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.192;QD=21.80;ReadPosRankSum=2.962;SB=-3.652e+03 GT:AD:DP:GQ:PL 1/1:3,336:339:99:7390,840,0 chrIII 145451 . C T 5009.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.87;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:5009,558,0 chrIII 145673 . C T 4221.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.69;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4221,483,0 chrIII 145735 . T C 4589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.172;QD=22.50;ReadPosRankSum=1.715;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4589,551,0 chrIII 145988 . G A 6572.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=16.1296;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.07;SB=-3.420e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:6572,750,0 chrIII 146270 . A G 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.4964;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.239;QD=18.02;ReadPosRankSum=1.717;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:4054,482,0 chrIII 146420 . A G 4110.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.8254;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.34;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4110,465,0 chrIII 146470 . A G 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.1461;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.422;QD=21.94;ReadPosRankSum=1.710;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3445,393,0 chrIII 146649 . G A 3767.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3767,423,0 chrIII 146768 . C A 3586.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.99;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3586,402,0 chrIII 146949 . C T 2224 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.41;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2257,255,0 chrIII 147587 . A G 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=161;Dels=0.00;FS=11.692;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.726;QD=21.19;ReadPosRankSum=2.917;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:3,155:161:99:3412,407,0 chrIII 147882 . C T 2162 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.99;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2195,246,0 chrIII 148041 . T C 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=99;Dels=0.00;FS=7.301;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.659;QD=21.85;ReadPosRankSum=2.400;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2196,255,0 chrIII 148135 . C A 2157 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.94;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2190,249,0 chrIII 148271 . T C 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.062;QD=21.78;ReadPosRankSum=1.701;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2494,291,0 chrIII 148587 . G A 3562.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=19.25;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3562,399,0 chrIII 148589 . T A 3542.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.74;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3542,408,0 chrIII 148979 . G T 2636 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=19.67;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2669,303,0 chrIII 148987 . A T 2314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=128;Dels=0.00;FS=6.630;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;MQRankSum=-1.415;QD=18.08;ReadPosRankSum=2.372;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2347,270,0 chrIII 148991 . G A 2263 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=17.54;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2296,264,0 chrIII 149003 . G A 2452 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=18.30;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2485,285,0 chrIII 149187 . C T 3481.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=24.01;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3481,393,0 chrIII 149347 . A G 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=158;Dels=0.00;FS=5.891;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.323;QD=19.36;ReadPosRankSum=2.955;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:3,153:158:99:3092,366,0 chrIII 149358 . G C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.59;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3268,378,0 chrIII 149433 . G A 2717 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.1581;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.74;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2750,309,0 chrIII 149466 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=21.17;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2129,249,0 chrIII 149504 . G C 1401 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=48.5412;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=21.23;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1434,171,0 chrIII 149508 . T C 1429 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=6.410;HaplotypeScore=55.4643;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;MQRankSum=-0.198;QD=20.41;ReadPosRankSum=1.683;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1462,165,0 chrIII 149514 . A C 47.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;DP=64;Dels=0.00;FS=8.062;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.85;MQ0=0;MQRankSum=0.812;QD=0.74;ReadPosRankSum=1.083;SB=-2.122e+02 GT:AD:DP:GQ:PL 0/1:1,63:64:10:77,0,10 chrIII 149594 . T A 2433 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.02;FS=0.000;HaplotypeScore=30.3368;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=20.79;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2466,282,0 chrIII 149686 . C T 382 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.36;MQ0=0;QD=15.92;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,23:24:48:415,48,0 chrIII 149687 . C A 374 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=16.26;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:48:407,48,0 chrIII 149702 . A G 335 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.78;MQ0=0;QD=16.75;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:42:368,42,0 chrIII 149746 . A C 91.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.944;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=0;MQRankSum=-0.965;QD=2.03;ReadPosRankSum=4.260;SB=2.74 GT:AD:DP:GQ:PL 1/1:37,8:45:15:124,15,0 chrIII 149755 . C T 91.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.840;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=1;MLEAF=0.500;MQ=35.99;MQ0=0;MQRankSum=-1.577;QD=1.54;ReadPosRankSum=1.345;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,14:59:99:121,0,133 chrIII 149756 . T A 91.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.161;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=1;MLEAF=0.500;MQ=35.99;MQ0=0;MQRankSum=-1.966;QD=1.54;ReadPosRankSum=1.948;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,13:59:99:121,0,143 chrIII 149777 . G C 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.983;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=1;MLEAF=0.500;MQ=40.01;MQ0=0;MQRankSum=-2.241;QD=0.99;ReadPosRankSum=3.708;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,13:68:97:97,0,336 chrIII 149782 . A C 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.509;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=1;MLEAF=0.500;MQ=41.35;MQ0=0;MQRankSum=-1.794;QD=0.71;ReadPosRankSum=2.776;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,13:69:79:79,0,422 chrIII 149803 . A T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=1;MLEAF=0.500;MQ=46.79;MQ0=0;MQRankSum=-2.597;QD=0.18;ReadPosRankSum=-2.042;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,14:72:43:43,0,752 chrIII 149805 . A T 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=1;MLEAF=0.500;MQ=47.98;MQ0=0;MQRankSum=-3.247;QD=0.17;ReadPosRankSum=-2.250;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,13:72:42:42,0,752 chrIII 149831 . C T 1135 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1168,135,0 chrIII 149847 . A G 1208 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.19;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1241,144,0 chrIII 149877 . C A 1206 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=19.45;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1239,141,0 chrIII 149901 . A G 1269 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;QD=16.92;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1302,159,0 chrIII 150045 . C T 2265 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.43;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2298,261,0 chrIII 150129 . T C 2328 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=21.96;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2361,279,0 chrIII 150161 . G T 2237 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=21.10;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2270,258,0 chrIII 150179 . T A 2128 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.27;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2161,249,0 chrIII 150203 . C T 1607 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=17.66;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1640,186,0 chrIII 150317 . T C 2050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=4.491;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.539;QD=22.78;ReadPosRankSum=1.694;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2083,243,0 chrIII 150321 . T C 2021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.098;DP=99;Dels=0.00;FS=8.071;HaplotypeScore=3.8385;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.490;QD=20.41;ReadPosRankSum=2.374;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2054,240,0 chrIII 150478 . C T 1752 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.05;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1785,204,0 chrIII 150520 . C A 1795 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.16;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1828,204,0 chrIII 150586 . A G 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=7.174;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=1.390;QD=21.03;ReadPosRankSum=2.397;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1989,243,0 chrIII 150592 . C G 1948 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=20.51;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1981,237,0 chrIII 150619 . G T 1922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.8405;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=1.414;QD=19.61;ReadPosRankSum=0.389;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1955,222,0 chrIII 150638 . A T 1799 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.1054;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.21;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1832,207,0 chrIII 150717 . G A 2409 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2358;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.90;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2442,276,0 chrIII 150823 . T C 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.863;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.7084;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.584;QD=22.48;ReadPosRankSum=2.415;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:2,139:143:99:3247,361,0 chrIII 150868 . T A 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.020;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.6509;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.664;QD=22.25;ReadPosRankSum=-0.593;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3271,359,0 chrIII 151161 . T G 3228.29 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.9978;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.52;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3262,378,0 chrIII 151378 . G C 1258 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=18.50;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1291,147,0 chrIII 151385 . A C 1139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=0.560;QD=17.52;ReadPosRankSum=1.679;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1172,135,0 chrIII 151509 . C T 738 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;QD=20.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:87:771,87,0 chrIII 151757 . C T 363.79 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.316;DP=65;Dels=0.00;FS=15.221;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=4;MQRankSum=0.871;QD=5.60;ReadPosRankSum=0.020;SB=-1.368e+02 GT:AD:DP:GQ:PL 1/1:5,60:65:10:396,10,0 chrIII 151761 . G A 393.45 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=63;Dels=0.00;FS=40.727;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=3;MQRankSum=3.317;QD=6.25;ReadPosRankSum=0.562;SB=-1.375e+02 GT:AD:DP:GQ:PL 1/1:8,55:63:7:425,7,0 chrIII 151793 . T C 249 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=4.45;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,54:55:33:282,33,0 chrIII 151796 . C T 176.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=3.75;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,46:46:24:209,24,0 chrIII 151797 . T A 197.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=4.19;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,46:46:27:230,27,0 chrIII 151803 . T G 204.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=3.78;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,54:54:27:237,27,0 chrIII 151809 . T C 190.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;MQRankSum=0.382;QD=3.22;ReadPosRankSum=1.674;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:1,58:59:27:223,27,0 chrIII 151817 . T C 379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;MQRankSum=-1.444;QD=5.26;ReadPosRankSum=1.684;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:48:412,48,0 chrIII 151826 . C T 415 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=0;QD=5.53;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:51:448,51,0 chrIII 151832 . G C 424 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;MQRankSum=-1.250;QD=5.30;ReadPosRankSum=-1.381;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:54:457,54,0 chrIII 151834 . A C 432 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=29.39;MQ0=0;QD=5.27;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:54:465,54,0 chrIII 151925 . G A 1903 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;QD=18.30;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1936,219,0 chrIII 152069 . G T 2745 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;QD=21.12;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2778,315,0 chrIII 152240 . A C 3875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=3.370;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=0.295;QD=22.02;ReadPosRankSum=1.673;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3875,447,0 chrIII 152249 . A G 3512.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=20.66;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3512,411,0 chrIII 152257 . G A 3388.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=18.93;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3388,390,0 chrIII 152269 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.3023;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;MQRankSum=-1.164;QD=17.55;ReadPosRankSum=1.637;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3261,375,0 chrIII 152334 . A G 3211.99 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.72;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3245,375,0 chrIII 152439 . T G 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=182;Dels=0.00;FS=6.544;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.484;QD=22.05;ReadPosRankSum=2.422;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:4013,465,0 chrIII 152546 . A G 3093 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.48;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3126,363,0 chrIII 152773 . A T 3528.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0598;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.62;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3528,399,0 chrIII 152818 . G C 3704.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.9046;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.66;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:3704,432,0 chrIII 152950 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=19.96;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3269,387,0 chrIII 152956 . C T 3156 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=18.56;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3189,369,0 chrIII 152962 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=19.99;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3598,405,0 chrIII 153392 . A T 3787.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=20.69;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3787,429,0 chrIII 153418 . G A 3878.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.19;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3878,432,0 chrIII 153706 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2437;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=16.92;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2741,318,0 chrIII 153719 . T G 3186 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.43;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3219,372,0 chrIII 153893 . A G 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.457;QD=20.70;ReadPosRankSum=2.403;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:2,103:106:99:2227,258,0 chrIII 154234 . A G 2983 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.5424;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.62;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3016,362,0 chrIII 154278 . C A 3033 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.14;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3066,342,0 chrIII 154683 . G A 2723 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.7121;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.78;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2756,315,0 chrIII 154902 . G A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.1651;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.22;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3321,381,0 chrIII 155493 . A G 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.8458;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.000;QD=22.04;ReadPosRankSum=1.708;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3162,366,0 chrIII 155616 . A G 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.201;QD=22.76;ReadPosRankSum=1.682;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:3196,369,0 chrIII 155855 . C T 2037 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2070,231,0 chrIII 156187 . C G 2675 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.11;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2708,312,0 chrIII 156289 . A G 5493.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=7.6558;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.57;SB=-3.120e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:5493,659,0 chrIII 156307 . T C 5781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=278;Dels=0.00;FS=3.090;HaplotypeScore=9.4672;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=1.178;QD=20.79;ReadPosRankSum=1.719;SB=-3.383e+03 GT:AD:DP:GQ:PL 1/1:1,274:278:99:5781,672,0 chrIII 156517 . G C 5370.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.48;SB=-2.965e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:5370,641,0 chrIII 156868 . A G 4461.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.4013;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.55;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4461,536,0 chrIII 156960 . C T 3429.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.71;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3429,390,0 chrIII 157443 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.639;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-1.523;QD=22.39;ReadPosRankSum=-0.639;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3336,360,0 chrIII 157485 . T C 3167 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.17;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3200,386,0 chrIII 157515 . G A 3668.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.5769;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.08;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3668,420,0 chrIII 157643 . C A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.7509;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.79;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3700,438,0 chrIII 157686 . A G 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=3.318;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=0.592;QD=19.15;ReadPosRankSum=1.711;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3135,366,0 chrIII 157694 . A G 2956 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=8.1747;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=17.29;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2989,354,0 chrIII 157807 . A G 3818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-1.107;QD=19.58;ReadPosRankSum=1.679;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:3818,455,0 chrIII 157812 . G T 3992.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.37;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3992,450,0 chrIII 157881 . C T 4098.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=18.5762;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.03;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4098,468,0 chrIII 157976 . C T 3280.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.12;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3280,366,0 chrIII 157998 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=19.08;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2991,345,0 chrIII 158053 . G A 3119 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=19.62;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3152,366,0 chrIII 158141 . C T 3022 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.06;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3055,348,0 chrIII 158335 . C A 2686 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=6.1883;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.90;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2719,309,0 chrIII 158345 . T C 2597 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=7.6619;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=19.53;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2630,303,0 chrIII 158627 . C T 3583.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.42;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3583,408,0 chrIII 158886 . A G 3596.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.8880;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.66;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3596,420,0 chrIII 158956 . T C 4267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=204;Dels=0.00;FS=4.288;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-1.070;QD=20.92;ReadPosRankSum=1.698;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4267,501,0 chrIII 159547 . A T 3701.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.0033;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.90;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3701,417,0 chrIII 159689 . C T 3056 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3089,348,0 chrIII 160125 . A T 4473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=3.330;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.240;QD=24.44;ReadPosRankSum=1.618;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4473,501,0 chrIII 160421 . T G 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.6685;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.034;QD=20.73;ReadPosRankSum=1.894;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3690,423,0 chrIII 160583 . G A 3656.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3656,402,0 chrIII 161749 . G T 3035 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.99;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3068,342,0 chrIII 161785 . T C 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=3.712;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.362;QD=21.27;ReadPosRankSum=1.680;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2904,336,0 chrIII 162396 . G C 898 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.96;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:931,108,0 chrIII 162640 . T G 1659 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1692,210,0 chrIII 163645 . T G 3315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.360;QD=22.25;ReadPosRankSum=1.709;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3315,395,0 chrIII 163816 . G A 3641.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=9.6927;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.05;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3641,414,0 chrIII 164068 . G A 6087.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=16.7056;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.80;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:6087,687,0 chrIII 164102 . A G 5825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=296;Dels=0.00;FS=4.893;HaplotypeScore=17.3335;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.991;QD=19.68;ReadPosRankSum=1.720;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,289:296:99:5825,710,0 chrIII 164202 . C T 5745.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=20.5818;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.18;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5745,651,0 chrIII 164277 . A G 5051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.9570;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.502;QD=19.65;ReadPosRankSum=1.719;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,255:257:99:5051,588,0 chrIII 164460 . T C 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.645;DP=189;Dels=0.01;FS=7.238;HaplotypeScore=34.2465;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.487;QD=17.84;ReadPosRankSum=3.772;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:5,180:187:99:3371,390,0 chrIII 164651 . T C 4095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.139;QD=21.78;ReadPosRankSum=1.677;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4095,483,0 chrIII 165283 . G A 4075.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=16.7401;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4075,456,0 chrIII 165407 . A C 4333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=3.465;HaplotypeScore=10.2234;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.571;QD=22.69;ReadPosRankSum=1.714;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4333,495,0 chrIII 165593 . C T 4296.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.49;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4296,486,0 chrIII 165706 . C T 4040.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.7756;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.84;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4040,456,0 chrIII 165982 . A G 3723.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.29;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3723,426,0 chrIII 166020 . T C 3057 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.8091;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.53;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3090,371,0 chrIII 166247 . A G 3779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=3.151;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.364;QD=19.99;ReadPosRankSum=1.695;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3779,452,0 chrIII 166414 . G A 4040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=189;Dels=0.00;FS=3.551;HaplotypeScore=9.7989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.774;QD=21.38;ReadPosRankSum=0.921;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4040,465,0 chrIII 166581 . A G 2247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.322;QD=19.71;ReadPosRankSum=1.701;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2280,267,0 chrIII 166648 . A G 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.118;QD=19.53;ReadPosRankSum=2.359;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:2728,315,0 chrIII 166713 . A G 2855 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2888,330,0 chrIII 166948 . C T 2621 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.8993;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.79;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2654,300,0 chrIII 167066 . G A 2257 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=0;QD=17.50;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2290,261,0 chrIII 167072 . T A 2024 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.200;DP=128;Dels=0.00;FS=8.577;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.44;MQ0=0;MQRankSum=-0.567;QD=15.81;ReadPosRankSum=2.296;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2057,234,0 chrIII 167074 . A T 2012 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.02;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.44;MQ0=0;MQRankSum=-1.457;QD=15.72;ReadPosRankSum=1.677;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2045,234,0 chrIII 167075 . C T 2015 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.20;MQ0=0;QD=15.87;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2048,234,0 chrIII 167138 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=22.21;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2787,309,0 chrIII 167218 . C G 2528 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.55;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2561,309,0 chrIII 167364 . G A 2670 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.53;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2703,300,0 chrIII 167366 . G C 2579 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.15;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2612,300,0 chrIII 167541 . A G 3782.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.0540;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.49;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3782,432,0 chrIII 167741 . C T 3705.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.5737;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.42;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3705,411,0 chrIII 168004 . T G 3079 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.68;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3112,351,0 chrIII 168099 . A G 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=128;Dels=0.00;FS=2.591;HaplotypeScore=8.0237;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.614;QD=18.62;ReadPosRankSum=2.851;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:2417,279,0 chrIII 168244 . G A 2317 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3017;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=24.65;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2350,264,0 chrIII 168300 . A G 2159 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=1;QD=21.38;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2192,258,0 chrIII 168390 . T C 656 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=17.73;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,35:37:84:689,84,0 chrIII 168393 . G C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=4.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:4:6:49,6,0 chrIII 168611 . T G 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087;DP=38;Dels=0.00;FS=18.537;HaplotypeScore=1.7803;MLEAC=1;MLEAF=0.500;MQ=28.61;MQ0=2;MQRankSum=0.859;QD=0.27;ReadPosRankSum=0.973;SB=7.051e-03 GT:AD:DP:GQ:PL 0/1:34,4:38:40:40,0,43 chrIII 169089 . C T 98.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.85;MQ0=0;QD=16.38;SB=-5.476e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:131,15,0 chrIII 169091 . G A 126.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;QD=15.77;SB=-7.863e+01 GT:AD:DP:GQ:PL 1/1:0,7:8:18:159,18,0 chrIII 169120 . G A 971 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=0;QD=24.90;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1004,114,0 chrIII 169147 . T G 947 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=0;QD=24.28;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:980,114,0 chrIII 169162 . A G 960 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=0;QD=24.62;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:993,114,0 chrIII 169196 . A G 301 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.59;MQ0=2;QD=17.71;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:1,15:17:39:334,39,0 chrIII 169450 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.96;MQ0=18;QD=1.04;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:10,11:21:6:53,6,0 chrIII 169701 . C T 2633 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=20.73;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2666,303,0 chrIII 169751 . G T 2399 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6528;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=22.21;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2432,279,0 chrIII 169779 . C A 2428 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=19.58;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2461,279,0 chrIII 169792 . C T 2579 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=19.10;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2612,291,0 chrIII 169812 . G T 3011 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.21;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3044,342,0 chrIII 169895 . C A 4378.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.7707;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.80;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4378,492,0 chrIII 169995 . G T 4018.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.6481;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.96;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4018,450,0 chrIII 170102 . T C 4230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=4.252;HaplotypeScore=7.6993;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=1.636;QD=23.24;ReadPosRankSum=1.713;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4230,480,0 chrIII 170143 . T C 3376.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.51;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3376,387,0 chrIII 170296 . T C 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=1.543;QD=21.80;ReadPosRankSum=1.705;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2845,330,0 chrIII 170363 . T C 1807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=98;Dels=0.00;FS=3.039;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;MQRankSum=2.048;QD=18.44;ReadPosRankSum=2.400;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1840,210,0 chrIII 170381 . A G 1372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=3.522;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.24;MQ0=0;MQRankSum=-1.732;QD=15.24;ReadPosRankSum=1.694;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1405,162,0 chrIII 170399 . A G 1119 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.24;MQ0=0;QD=11.78;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1152,135,0 chrIII 170406 . G A 980 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=76.0132;MLEAC=2;MLEAF=1.00;MQ=34.51;MQ0=0;QD=10.54;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1013,114,0 chrIII 170427 . C T 1106 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.69;MQ0=0;QD=9.37;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1139,129,0 chrIII 170451 . G T 1960 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;QD=14.31;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1993,222,0 chrIII 170485 . A G 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=3.578;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=0.369;QD=18.11;ReadPosRankSum=1.710;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2840,341,0 chrIII 170504 . G A 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=142.3887;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=0.09;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:6:44,6,0 chrIII 170561 . A G 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=3.829;HaplotypeScore=4.5105;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;MQRankSum=-1.137;QD=16.90;ReadPosRankSum=1.705;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2196,255,0 chrIII 170570 . C T 2257 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=18.35;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2290,258,0 chrIII 170589 . A G 2265 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.5283;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=18.72;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2298,261,0 chrIII 170765 . A G 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=148;Dels=0.00;FS=6.106;HaplotypeScore=11.9951;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=2.479;QD=23.49;ReadPosRankSum=2.952;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:3,142:148:99:3477,399,0 chrIII 170886 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.9000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.93;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3279,372,0 chrIII 170997 . T C 4324.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.2016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4324,489,0 chrIII 171207 . G T 5257.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=14.2831;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.37;SB=-2.823e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5257,594,0 chrIII 171564 . G A 3317.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3317,378,0 chrIII 171620 . A G 2898 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.1338;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.29;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2931,336,0 chrIII 172122 . G A 4399.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=5.9205;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.64;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4399,510,0 chrIII 172125 . C T 4112.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.77;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,204:208:99:4112,465,0 chrIII 172362 . C T 3131 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=21.45;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3164,354,0 chrIII 172479 . T C 2765 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.77;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2798,333,0 chrIII 173446 . T A 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.189;DP=160;Dels=0.00;FS=8.712;HaplotypeScore=17.0886;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.405;QD=21.36;ReadPosRankSum=2.373;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3418,390,0 chrIII 173565 . T C 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-1.595;QD=17.12;ReadPosRankSum=1.641;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2635,297,0 chrIII 173853 . G A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.75;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3523,411,0 chrIII 173968 . A G 2970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.034;QD=21.37;ReadPosRankSum=1.682;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3003,357,0 chrIII 174733 . A G 5482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=242;Dels=0.00;FS=3.508;HaplotypeScore=14.4377;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.751;QD=22.65;ReadPosRankSum=1.718;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:1,239:242:99:5482,630,0 chrIII 174914 . G C 6210.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=22.2736;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=20.84;SB=-3.218e+03 GT:AD:DP:GQ:PL 1/1:0,294:298:99:6210,746,0 chrIII 174996 . A G 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=230;Dels=0.00;FS=6.232;HaplotypeScore=28.2973;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.584;QD=18.37;ReadPosRankSum=2.010;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:4226,495,0 chrIII 175038 . G C 4341.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.48;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4341,507,0 chrIII 175122 . C T 4838.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.50;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:4838,543,0 chrIII 175128 . T A 4845.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=6.1069;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.79;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4845,546,0 chrIII 176538 . G A 2812 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2845,324,0 chrIII 176624 . T A 2407 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.93;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2440,279,0 chrIII 176637 . G A 2469 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=20.75;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2502,276,0 chrIII 176648 . C T 2440 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.33;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2473,276,0 chrIII 176807 . G A 2645 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.62;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2678,312,0 chrIII 177141 . A T 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=106;Dels=0.00;FS=3.095;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.666;QD=22.19;ReadPosRankSum=1.699;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2385,267,0 chrIII 177325 . A G 2098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.494;QD=20.37;ReadPosRankSum=1.664;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2131,249,0 chrIII 177399 . G A 2413 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2446,282,0 chrIII 178141 . G A 2004 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.3290;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.24;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2037,231,0 chrIII 178421 . C A 2606 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.5682;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.08;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2639,291,0 chrIII 178495 . C G 2626 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.17;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2659,318,0 chrIII 178511 . G A 2735 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.40;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2768,318,0 chrIII 178994 . G C 2484 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.66;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2517,291,0 chrIII 179047 . A G 2178 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=19.27;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2211,258,0 chrIII 179049 . T A 2250 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.74;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2283,255,0 chrIII 179185 . G A 2945 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.5843;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.45;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2978,345,0 chrIII 179391 . G C 3080 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.33;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3113,354,0 chrIII 179888 . T G 2397 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.03;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2430,282,0 chrIII 180071 . C T 2240 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2273,261,0 chrIII 180127 . G A 2144 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2177,240,0 chrIII 180717 . A G 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=111;Dels=0.00;FS=3.424;HaplotypeScore=7.5964;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.063;QD=21.70;ReadPosRankSum=1.701;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2442,282,0 chrIII 180860 . G A 2715 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=23.01;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2748,312,0 chrIII 180865 . C T 2514 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5594;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.65;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2547,291,0 chrIII 180969 . A G 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=108;Dels=0.00;FS=2.603;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.876;QD=21.32;ReadPosRankSum=2.934;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:3,103:108:99:2336,267,0 chrIII 181016 . G A 2707 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.83;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2740,315,0 chrIII 181166 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.89;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2207,246,0 chrIII 181373 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.72;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2354,270,0 chrIII 181465 . G A 2305 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.95;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2338,264,0 chrIII 181556 . T C 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.131;QD=23.37;ReadPosRankSum=2.380;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3319,387,0 chrIII 181625 . A G 2713 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9773;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.36;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2746,315,0 chrIII 181637 . T C 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.7818;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.690;QD=21.01;ReadPosRankSum=1.704;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2617,315,0 chrIII 181685 . A G 3710.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.0159;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.95;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:3710,429,0 chrIII 181862 . G C 3478.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.5867;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=21.87;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3478,408,0 chrIII 182326 . G A 3069 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3102,345,0 chrIII 182459 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.76;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3345,384,0 chrIII 182642 . A G 4640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=207;Dels=0.00;FS=4.218;HaplotypeScore=14.2208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.497;QD=22.42;ReadPosRankSum=1.665;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4640,537,0 chrIII 183385 . C T 3044 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.97;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3077,354,0 chrIII 183635 . C T 1948 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.4928;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.08;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1981,228,0 chrIII 183704 . C A 3275.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3275,360,0 chrIII 184058 . C T 2880 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.2618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2913,330,0 chrIII 184133 . T C 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.547;QD=22.76;ReadPosRankSum=1.709;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3436,390,0 chrIII 184376 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.8095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.76;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3754,429,0 chrIII 184538 . T C 3673.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3673,423,0 chrIII 184685 . C T 2045 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2078,234,0 chrIII 184808 . T C 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=134;Dels=0.00;FS=3.042;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.905;QD=20.39;ReadPosRankSum=2.375;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,129:134:99:2765,318,0 chrIII 184874 . C A 2870 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.60;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2903,330,0 chrIII 185101 . T A 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=134;Dels=0.00;FS=3.177;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.925;QD=20.16;ReadPosRankSum=1.628;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2734,312,0 chrIII 185129 . A G 2457 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=7.0458;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.05;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2490,288,0 chrIII 185221 . G A 2818 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.35;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2851,324,0 chrIII 185310 . C G 3432.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.72;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,153:158:99:3432,396,0 chrIII 185357 . C T 3851.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.26;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3851,438,0 chrIII 185444 . T C 3814.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.67;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3814,452,0 chrIII 185468 . G A 4069.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=22.48;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4069,459,0 chrIII 185558 . A G 4260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.4293;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.191;QD=21.30;ReadPosRankSum=1.715;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4260,498,0 chrIII 185604 . G A 4286.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.0188;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.56;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4286,492,0 chrIII 185655 . C T 3616.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.9655;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.90;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3616,411,0 chrIII 185657 . A G 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=170;Dels=0.00;FS=2.567;HaplotypeScore=1.9655;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=0.071;QD=19.93;ReadPosRankSum=2.935;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:3388,393,0 chrIII 185682 . A G 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=163;Dels=0.00;FS=2.585;HaplotypeScore=7.2915;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-0.335;QD=18.96;ReadPosRankSum=2.882;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:3,159:163:99:3123,363,0 chrIII 185836 . A C 3122 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.46;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3155,366,0 chrIII 185887 . A G 3369.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=24.06;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3369,387,0 chrIII 186028 . C G 2654 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2687,312,0 chrIII 186237 . T A 2320 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.43;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2353,267,0 chrIII 186464 . C T 3992.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.4382;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.55;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3992,456,0 chrIII 186911 . C A 4038.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.19;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4038,459,0 chrIII 186984 . C T 4108.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.9388;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.18;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4108,462,0 chrIII 187010 . G A 5355.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=13.1289;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.95;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5355,606,0 chrIII 187179 . C T 4167.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.1141;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.05;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4167,465,0 chrIII 187273 . C A 3342.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.25;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3342,375,0 chrIII 187328 . T C 3162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=158;Dels=0.00;FS=6.217;HaplotypeScore=11.2857;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.775;QD=20.01;ReadPosRankSum=2.403;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3195,366,0 chrIII 187459 . C T 3138 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.3675;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.12;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3171,366,0 chrIII 187612 . G A 3748.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=19.4461;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.58;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3748,423,0 chrIII 187655 . G A 4730.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.38;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4730,534,0 chrIII 187736 . C T 3413.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.02;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3413,384,0 chrIII 187799 . G A 2486 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=16.57;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2519,285,0 chrIII 187803 . A T 2724 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=17.80;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2757,306,0 chrIII 187853 . G A 3160 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=18.37;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3193,360,0 chrIII 187932 . G A 1919 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=8.0109;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.19;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1952,231,0 chrIII 188102 . C T 3211.99 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.97;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3245,366,0 chrIII 188202 . C T 2768 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.26;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2801,318,0 chrIII 188418 . C T 2165 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.68;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2198,258,0 chrIII 188786 . G T 2751 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.01;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2784,315,0 chrIII 188904 . C A 3855.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.54;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3855,438,0 chrIII 188954 . C T 3419.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.92;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3419,387,0 chrIII 188979 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=20.42;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2933,330,0 chrIII 189025 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=18.35;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2878,324,0 chrIII 189040 . A C 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=2.997;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;MQRankSum=-1.078;QD=17.04;ReadPosRankSum=2.414;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2384,273,0 chrIII 189042 . C T 2436 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=17.40;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2469,273,0 chrIII 189052 . C G 2156 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=16.84;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2189,255,0 chrIII 189260 . A T 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=126;Dels=0.00;FS=3.041;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=0.517;QD=22.42;ReadPosRankSum=2.411;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2858,327,0 chrIII 189331 . T C 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=141;Dels=0.00;FS=3.031;HaplotypeScore=10.4408;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.469;QD=21.62;ReadPosRankSum=2.397;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:2,137:141:99:3082,360,0 chrIII 189550 . C T 3889.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=19.35;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3889,441,0 chrIII 189555 . A G 3874.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=18.99;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3874,447,0 chrIII 189656 . G A 5655.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=12.2803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-3.052e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5655,627,0 chrIII 189830 . C A 4692.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.72;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4692,534,0 chrIII 190645 . A G 4042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=3.956;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.889;QD=21.16;ReadPosRankSum=1.695;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:4042,459,0 chrIII 190810 . C T 4472.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4472,504,0 chrIII 191536 . C T 4127.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4127,468,0 chrIII 191767 . C T 2612 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.49;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2645,303,0 chrIII 192005 . C T 4218.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.30;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4218,477,0 chrIII 192293 . C T 4326.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.6712;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.85;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4326,486,0 chrIII 192371 . T C 4340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=200;Dels=0.00;FS=4.476;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.183;QD=21.70;ReadPosRankSum=1.680;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4340,498,0 chrIII 192710 . A G 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.771;DP=152;Dels=0.00;FS=14.001;HaplotypeScore=2.2019;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-1.074;QD=17.78;ReadPosRankSum=4.140;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:6,146:152:99:2735,321,0 chrIII 192715 . C A 2793 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=20.24;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2826,312,0 chrIII 193023 . A G 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=123;Dels=0.00;FS=5.819;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.139;QD=20.85;ReadPosRankSum=2.795;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2597,314,0 chrIII 193063 . G A 3054 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.2904;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.97;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3087,354,0 chrIII 193107 . C A 2689 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.3337;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.53;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2722,312,0 chrIII 193294 . A G 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.028;DP=134;Dels=0.00;FS=6.527;HaplotypeScore=5.9300;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.525;QD=20.96;ReadPosRankSum=0.823;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2841,305,0 chrIII 193320 . T C 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=132;Dels=0.00;FS=5.823;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.855;QD=21.55;ReadPosRankSum=2.855;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2877,327,0 chrIII 193503 . A G 3631.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.2135;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.61;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3631,440,0 chrIII 193675 . C T 4522.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.8356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4522,504,0 chrIII 193815 . C T 2745 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2778,315,0 chrIII 193896 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.19;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3603,414,0 chrIII 194107 . C G 2699 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.77;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2732,315,0 chrIII 194217 . A T 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.018;QD=21.24;ReadPosRankSum=1.554;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2093,234,0 chrIII 194218 . T C 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=4.462;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-0.820;QD=20.84;ReadPosRankSum=1.696;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2013,234,0 chrIII 194344 . C G 2593 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.97;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2626,300,0 chrIII 194465 . T C 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.0766;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.409;QD=22.56;ReadPosRankSum=1.669;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3723,435,0 chrIII 194544 . T C 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.5204;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.250;QD=22.70;ReadPosRankSum=1.690;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3768,438,0 chrIII 194732 . C T 4214.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.95;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4214,489,0 chrIII 195020 . A G 4185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.9957;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.469;QD=21.68;ReadPosRankSum=1.714;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4185,480,0 chrIII 195038 . G A 3924.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=21.10;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3924,447,0 chrIII 195050 . T C 3838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=182;Dels=0.00;FS=11.831;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=1.171;QD=21.09;ReadPosRankSum=2.928;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:3838,441,0 chrIII 195140 . G A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.26;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3396,387,0 chrIII 195587 . A T 4737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=202;Dels=0.00;FS=3.166;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.436;QD=23.45;ReadPosRankSum=1.715;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4737,537,0 chrIII 195779 . T C 3385.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.8514;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.39;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3385,404,0 chrIII 195980 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.97;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3468,381,0 chrIII 196033 . G A 3736.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.50;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3736,420,0 chrIII 196067 . G A 3614.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3614,405,0 chrIII 196131 . C G 2715 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2748,318,0 chrIII 196245 . C T 2828 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.20;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2861,327,0 chrIII 196646 . C T 3138 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.3461;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.64;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3171,360,0 chrIII 196742 . C T 3348.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.5337;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.17;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3348,384,0 chrIII 197160 . T A 3434.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.7984;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.60;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3434,381,0 chrIII 197217 . A C 2775 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=18.50;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2808,338,0 chrIII 197459 . T G 1849 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=97.8111;MLEAC=2;MLEAF=1.00;MQ=40.71;MQ0=0;QD=16.36;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1882,222,0 chrIII 198348 . A G 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=214;Dels=0.00;FS=2.871;HaplotypeScore=14.5748;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.905;QD=21.64;ReadPosRankSum=2.415;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:2,211:214:99:4631,531,0 chrIII 198729 . G A 375.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.297;DP=242;Dels=0.00;FS=82.349;HaplotypeScore=13.7209;MLEAC=1;MLEAF=0.500;MQ=34.95;MQ0=15;MQRankSum=-7.159;QD=1.55;ReadPosRankSum=0.637;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:164,76:242:99:405,0,2655 chrIII 198944 . T A 9481.01 filter AC=2;AF=1.00;AN=2;DP=412;Dels=0.00;FS=0.000;HaplotypeScore=6.3910;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=15;QD=23.01;SB=-4.019e+03 GT:AD:DP:GQ:PL 1/1:0,412:412:99:9481,1077,0 chrIII 199307 . A G 1730 filter AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.06;MQ0=59;QD=11.69;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,147:148:99:1763,204,0 chrIII 201041 . C A 1327 filter AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=20.65;MQ0=78;QD=9.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1360,153,0 chrIII 201081 . C T 1625 filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.02;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=22.69;MQ0=78;QD=11.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:1658,189,0 chrIII 201125 . G C 2088 filter AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=39;QD=14.50;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,139:144:99:2121,249,0 chrIII 201161 . C T 2738 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.38;MQ0=3;QD=17.66;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2771,312,0 chrIII 201163 . C T 2531 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.71;MQ0=1;QD=16.65;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2564,297,0 chrIII 201166 . G A 2694 SnpCluster AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.61;MQ0=0;QD=16.84;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2727,312,0 chrIII 201189 . A C 3018 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.3516;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=16.77;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:3051,351,0 chrIII 201258 . C T 4290.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.01;FS=0.000;HaplotypeScore=5.7830;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=23.57;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4290,483,0 chrIII 201282 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.8402;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=22.26;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3785,449,0 chrIII 201717 . A G 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=135;Dels=0.00;FS=2.855;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.385;QD=21.33;ReadPosRankSum=2.413;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2912,339,0 chrIII 201965 . T A 2638 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.45;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2671,300,0 chrIII 201978 . A G 2782 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=19.87;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2815,327,0 chrIII 202065 . C T 3855.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.78;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3855,444,0 chrIII 202104 . A C 3582.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.4422;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.41;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3582,417,0 chrIII 202304 . T C 3320.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.70;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3320,384,0 chrIII 202497 . G A 2724 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.33;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2757,312,0 chrIII 202551 . T A 2476 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.53;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2509,285,0 chrIII 202704 . A G 2502 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.2157;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.03;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2535,294,0 chrIII 202932 . C A 3067 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=18.59;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3100,348,0 chrIII 202939 . C T 2928 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.89;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2961,330,0 chrIII 203124 . T C 3902.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.43;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3902,447,0 chrIII 203412 . A G 4154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=3.787;HaplotypeScore=13.1735;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.206;QD=23.34;ReadPosRankSum=1.673;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4154,480,0 chrIII 203463 . C G 3902.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.4890;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=23.23;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3902,450,0 chrIII 203567 . T C 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=176;Dels=0.00;FS=6.613;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.161;QD=21.70;ReadPosRankSum=2.393;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3819,438,0 chrIII 203646 . C T 4645.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.6883;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.33;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4645,513,0 chrIII 203682 . C T 4427.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.4906;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.88;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4427,501,0 chrIII 203691 . A G 3879.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.726;DP=202;Dels=0.00;FS=15.492;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-1.751;QD=19.20;ReadPosRankSum=3.796;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:5,197:202:99:3879,447,0 chrIII 203991 . A C 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.268;DP=151;Dels=0.00;FS=18.099;HaplotypeScore=7.5781;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.953;QD=21.24;ReadPosRankSum=4.437;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:7,143:151:99:3240,389,0 chrIII 204525 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=19.03;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3058,348,0 chrIII 204530 . A T 2999 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=18.29;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3032,348,0 chrIII 204543 . G T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.7442;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=18.71;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3406,387,0 chrIII 204670 . C T 3515.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=16.6041;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.64;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3515,399,0 chrIII 204750 . G A 3460.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=21.36;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3460,393,0 chrIII 205065 . A G 2480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.562;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.605;QD=22.75;ReadPosRankSum=1.700;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2513,300,0 chrIII 205338 . C T 2621 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.84;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2654,303,0 chrIII 205454 . A T 2208 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=19.37;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2241,255,0 chrIII 205472 . C A 2009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=112;Dels=0.01;FS=3.293;HaplotypeScore=3.6376;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;MQRankSum=-0.515;QD=17.94;ReadPosRankSum=1.326;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2042,234,0 chrIII 205486 . T C 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=3.316;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=-0.891;QD=18.54;ReadPosRankSum=1.564;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1943,225,0 chrIII 205619 . A G 1208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.309;DP=62;Dels=0.00;FS=2.436;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;MQRankSum=-2.421;QD=19.48;ReadPosRankSum=3.309;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:4,58:62:99:1241,147,0 chrIII 205620 . T C 1220 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.76;MQ0=0;QD=21.03;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1253,147,0 chrIII 205630 . C G 1160 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=0;QD=19.33;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1193,141,0 chrIII 205637 . C T 1258 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;QD=19.97;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1291,150,0 chrIII 205673 . G C 1422 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=178.6262;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;QD=20.31;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1455,165,0 chrIII 205729 . G A 1217 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=19.63;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1250,141,0 chrIII 205742 . A T 875 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=16.83;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:908,105,0 chrIII 205779 . T A 565 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=0;QD=13.14;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:69:598,69,0 chrIII 205780 . G A 558 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;QD=13.29;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:66:591,66,0 chrIII 205806 . A G 462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=5.850;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.75;MQ0=0;MQRankSum=-1.386;QD=9.24;ReadPosRankSum=1.663;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:60:495,60,0 chrIII 205811 . T C 523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=0;MQRankSum=-1.532;QD=10.06;ReadPosRankSum=1.666;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:66:556,66,0 chrIII 205824 . A C 467 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;QD=9.16;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:60:500,60,0 chrIII 205857 . G C 413 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=11.16;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:54:446,54,0 chrIII 205870 . A T 492 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.73;MQ0=0;QD=12.95;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:63:525,63,0 chrIII 205883 . C T 530 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.46;MQ0=0;QD=14.32;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:66:563,66,0 chrIII 205886 . T G 522 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=13.38;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:66:555,66,0 chrIII 206021 . A G 1265 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;QD=22.19;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1298,147,0 chrIII 206083 . A T 1201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=60;Dels=0.00;FS=4.164;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=0.693;QD=20.02;ReadPosRankSum=1.675;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1234,141,0 chrIII 206233 . A G 3408.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.88;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3408,396,0 chrIII 207086 . G C 4833.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=21.58;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4833,543,0 chrIII 207093 . G A 4806.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=5.9195;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.46;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4806,543,0 chrIII 207294 . C A 5308.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=16.0799;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.80;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5308,600,0 chrIII 207459 . C G 4153.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.0387;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.68;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4153,491,0 chrIII 207528 . G A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.8394;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=19.80;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3683,414,0 chrIII 207534 . G A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.0985;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.43;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3372,390,0 chrIII 207705 . T C 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=167;Dels=0.00;FS=3.029;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.007;QD=22.09;ReadPosRankSum=2.376;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3689,423,0 chrIII 208072 . C G 3865.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.12;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,178:183:99:3865,438,0 chrIII 208103 . A G 3063 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=18.91;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3096,369,0 chrIII 208234 . A G 4083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=4.596;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.306;QD=23.88;ReadPosRankSum=1.671;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4083,465,0 chrIII 208432 . C T 5046.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.75;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5046,567,0 chrIII 208480 . G T 4825.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=19.77;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:4825,561,0 chrIII 208489 . A G 4300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-1.464;QD=18.45;ReadPosRankSum=1.702;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:4300,521,0 chrIII 208702 . G A 3834.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.1435;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.42;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3834,432,0 chrIII 208795 . C T 3868.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=16.0869;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.25;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3868,435,0 chrIII 208954 . T A 5221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=253;Dels=0.00;FS=2.566;HaplotypeScore=16.2841;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=1.217;QD=20.64;ReadPosRankSum=2.922;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:3,246:253:99:5221,591,0 chrIII 209056 . T C 7479.01 PASS AC=2;AF=1.00;AN=2;DP=356;Dels=0.00;FS=0.000;HaplotypeScore=18.3839;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.01;SB=-3.665e+03 GT:AD:DP:GQ:PL 1/1:0,354:356:99:7479,855,0 chrIII 209248 . A G 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=17.5490;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;MQRankSum=0.129;QD=15.74;ReadPosRankSum=1.718;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,241:242:99:3808,450,0 chrIII 209260 . C G 3498.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=14.34;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:3498,419,0 chrIII 209265 . C T 3958.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=15.16;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:3958,447,0 chrIII 209380 . T A 4882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=253;Dels=0.00;FS=3.737;HaplotypeScore=21.3451;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.021;QD=19.30;ReadPosRankSum=1.677;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:4882,546,0 chrIII 209464 . A G 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.346;QD=19.18;ReadPosRankSum=1.687;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3045,365,0 chrIII 209617 . T G 2751 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.3992;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=20.08;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2784,312,0 chrIII 209634 . T C 2161 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=17.43;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2194,255,0 chrIII 209648 . A G 2340 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.02;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2373,270,0 chrIII 209687 . G A 1729 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=18.01;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1762,198,0 chrIII 209716 . A G 1717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-1.504;QD=18.66;ReadPosRankSum=1.694;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1750,201,0 chrIII 209758 . C T 1662 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.10;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1695,192,0 chrIII 209805 . A G 683.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.232;DP=123;Dels=0.00;FS=21.263;HaplotypeScore=40.0066;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=2.986;QD=5.55;ReadPosRankSum=5.518;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:34,87:123:24:716,24,0 chrIII 209856 . T C 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2745;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.049;QD=19.48;ReadPosRankSum=1.699;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2098,246,0 chrIII 209941 . G C 4404.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=18.1830;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.02;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4404,504,0 chrIII 210036 . T C 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=1.267;QD=20.35;ReadPosRankSum=1.680;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4110,483,0 chrIII 210139 . A G 5023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=14.3403;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.058;QD=18.95;ReadPosRankSum=1.653;SB=-3.124e+03 GT:AD:DP:GQ:PL 1/1:1,261:265:99:5023,582,0 chrIII 210192 . T C 4740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=259;Dels=0.00;FS=4.056;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=1.597;QD=18.30;ReadPosRankSum=1.651;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:1,256:259:99:4740,543,0 chrIII 210245 . T C 4685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=256;Dels=0.00;FS=10.273;HaplotypeScore=20.6981;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=1.913;QD=18.30;ReadPosRankSum=2.830;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:3,252:256:99:4685,540,0 chrIII 210436 . C A 3730.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=19.63;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3730,426,0 chrIII 210441 . C T 3817.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.02;FS=0.000;HaplotypeScore=7.4489;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=19.98;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3817,426,0 chrIII 210469 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=3.990;HaplotypeScore=405.1349;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;MQRankSum=0.157;QD=18.06;ReadPosRankSum=1.715;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:3576,405,0 chrIII 210635 . A G 4108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=0.571;QD=23.75;ReadPosRankSum=1.632;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4108,471,0 chrIII 211159 . T G 6496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=20.3177;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.325;QD=21.95;ReadPosRankSum=1.720;SB=-3.411e+03 GT:AD:DP:GQ:PL 1/1:1,292:296:99:6496,738,0 chrIII 211204 . A G 6695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=325;Dels=0.00;FS=5.875;HaplotypeScore=19.2630;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.775;QD=20.60;ReadPosRankSum=2.917;SB=-3.552e+03 GT:AD:DP:GQ:PL 1/1:3,322:325:99:6695,774,0 chrIII 211348 . C T 4580.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=20.7227;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=18.47;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:4580,522,0 chrIII 211496 . C A 4017.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=20.09;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4017,444,0 chrIII 211504 . A G 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=192;Dels=0.00;FS=3.195;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-1.714;QD=19.32;ReadPosRankSum=1.696;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:3709,429,0 chrIII 211639 . T C 887.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.437;DP=317;Dels=0.00;FS=26.411;HaplotypeScore=39.8632;MLEAC=1;MLEAF=0.500;MQ=40.62;MQ0=1;MQRankSum=-5.788;QD=2.80;ReadPosRankSum=-13.985;SB=-5.240e+02 GT:AD:DP:GQ:PL 0/1:200,115:317:99:917,0,1347 chrIII 211997 . A G 4308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=230;Dels=0.00;FS=9.776;HaplotypeScore=8.8816;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-0.092;QD=18.73;ReadPosRankSum=2.352;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:3,225:230:99:4308,498,0 chrIII 211998 . G C 4342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=10.4590;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-1.236;QD=18.72;ReadPosRankSum=2.880;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:3,223:232:99:4342,498,0 chrIII 212063 . G T 2581 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=9.2625;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=10.80;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:2614,294,0 chrIII 212180 . C T 4412.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=12.3914;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=17.10;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:4412,495,0 chrIII 212321 . C T 5548.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=19.9150;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=21.34;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5548,624,0 chrIII 212397 . A G 5394.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=10.5405;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.60;SB=-2.952e+03 GT:AD:DP:GQ:PL 1/1:0,288:290:99:5394,615,0 chrIII 212415 . A G 5529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=303;Dels=0.00;FS=11.407;HaplotypeScore=16.6391;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.503;QD=18.25;ReadPosRankSum=2.977;SB=-3.126e+03 GT:AD:DP:GQ:PL 1/1:3,299:303:99:5529,627,0 chrIII 212528 . A T 7972.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=21.3733;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.04;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,346:346:99:7972,903,0 chrIII 212637 . T C 9159.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=425;Dels=0.00;FS=2.984;HaplotypeScore=24.2783;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=1.174;QD=21.55;ReadPosRankSum=2.380;SB=-4.872e+03 GT:AD:DP:GQ:PL 1/1:2,421:425:99:9159,1038,0 chrIII 212942 . T C 4806.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=16.4300;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.67;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4806,552,0 chrIII 213069 . T C 8284.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.077;DP=385;Dels=0.00;FS=4.522;HaplotypeScore=32.8918;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.380;QD=21.52;ReadPosRankSum=4.509;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:7,376:385:99:8284,965,0 chrIII 213146 . G A 7511.01 filter AC=2;AF=1.00;AN=2;DP=372;Dels=0.00;FS=0.000;HaplotypeScore=31.2945;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.19;SB=-3.022e+03 GT:AD:DP:GQ:PL 1/1:0,371:372:99:7511,884,0 chrIII 213185 . G C 6645.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=13.7110;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.03;SB=-3.732e+03 GT:AD:DP:GQ:PL 1/1:0,316:316:99:6645,779,0 chrIII 213219 . T A 6083.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=17.2850;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=18.89;SB=-3.046e+03 GT:AD:DP:GQ:PL 1/1:0,322:322:99:6083,696,0 chrIII 213542 . T C 5600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=19.8358;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.033;QD=21.29;ReadPosRankSum=1.693;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:5600,665,0 chrIII 213859 . G A 1660 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=44.4239;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=15.81;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1693,192,0 chrIII 213895 . A G 460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.155;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;MQRankSum=-1.040;QD=14.84;ReadPosRankSum=1.617;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:1,29:31:57:493,57,0 chrIII 213973 . T C 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.469;QD=20.36;ReadPosRankSum=2.366;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2436,279,0 chrIII 214002 . G C 2521 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=18.40;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,132:137:99:2554,300,0 chrIII 214126 . A G 5087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=5.9366;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=1.221;QD=19.87;ReadPosRankSum=0.255;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,250:256:99:5087,623,0 chrIII 214145 . A C 5744.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=20.1854;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=19.02;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,298:302:99:5744,680,0 chrIII 214574 . T C 6373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=348;Dels=0.00;FS=11.039;HaplotypeScore=23.7474;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.723;QD=18.31;ReadPosRankSum=2.400;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:2,346:348:99:6373,767,0 chrIII 214762 . C T 2638 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=17.59;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2671,312,0 chrIII 214777 . A G 2894 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=18.67;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2927,342,0 chrIII 215005 . G A 3067 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=20.58;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3100,354,0 chrIII 215020 . T G 2848 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=18.86;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2881,342,0 chrIII 215332 . C T 4387.01 SnpCluster AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=6.7082;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=18.20;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:4387,495,0 chrIII 215336 . A G 4317.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=241;Dels=0.00;FS=10.165;HaplotypeScore=5.0094;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;MQRankSum=0.213;QD=17.91;ReadPosRankSum=2.846;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:3,238:241:99:4317,504,0 chrIII 215341 . A G 3968.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.832;DP=250;Dels=0.00;FS=8.793;HaplotypeScore=5.9960;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=0.839;QD=15.87;ReadPosRankSum=3.672;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:7,241:250:99:3968,453,0 chrIII 215344 . G A 4160.01 SnpCluster AC=2;AF=1.00;AN=2;DP=252;Dels=0.02;FS=0.000;HaplotypeScore=19.3056;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=16.51;SB=-2.966e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:4160,471,0 chrIII 215487 . G T 8853.01 filter AC=2;AF=1.00;AN=2;DP=388;Dels=0.00;FS=0.000;HaplotypeScore=27.6462;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.82;SB=-3.586e+03 GT:AD:DP:GQ:PL 1/1:0,387:388:99:8853,993,0 chrIII 215845 . T A 6746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=339;Dels=0.00;FS=3.967;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.986;QD=19.90;ReadPosRankSum=1.620;SB=-3.534e+03 GT:AD:DP:GQ:PL 1/1:1,338:339:99:6746,753,0 chrIII 215848 . C T 6592.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=8.6389;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=19.98;SB=-3.414e+03 GT:AD:DP:GQ:PL 1/1:0,329:330:99:6592,741,0 chrIII 215935 . G A 4883.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=17.1978;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.10;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:4883,552,0 chrIII 215974 . C T 5525.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=20.6682;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.93;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5525,630,0 chrIII 216042 . T C 5707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=279;Dels=0.00;FS=3.025;HaplotypeScore=17.6787;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=1.555;QD=20.46;ReadPosRankSum=2.414;SB=-3.409e+03 GT:AD:DP:GQ:PL 1/1:2,276:279:99:5707,657,0 chrIII 216193 . T C 5380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=274;Dels=0.00;FS=10.944;HaplotypeScore=17.0228;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=2.052;QD=19.64;ReadPosRankSum=2.974;SB=-2.936e+03 GT:AD:DP:GQ:PL 1/1:3,269:274:99:5380,635,0 chrIII 216257 . C T 6407.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=30.2037;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.36;SB=-3.299e+03 GT:AD:DP:GQ:PL 1/1:0,299:300:99:6407,723,0 chrIII 216352 . T C 6132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=288;Dels=0.00;FS=3.017;HaplotypeScore=19.0765;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.004;QD=21.29;ReadPosRankSum=2.407;SB=-3.079e+03 GT:AD:DP:GQ:PL 1/1:2,285:288:99:6132,740,0 chrIII 216400 . A T 5125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=233;Dels=0.00;FS=2.962;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.164;QD=22.00;ReadPosRankSum=2.397;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:5125,573,0 chrIII 216424 . G C 4016.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.1741;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.50;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4016,479,0 chrIII 216488 . T G 5432.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.30;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5432,621,0 chrIII 216556 . T C 4290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=202;Dels=0.00;FS=4.643;HaplotypeScore=10.9772;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-1.129;QD=21.24;ReadPosRankSum=1.646;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4290,495,0 chrIII 216587 . T C 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=184;Dels=0.00;FS=3.932;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=1.013;QD=19.96;ReadPosRankSum=1.713;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3672,423,0 chrIII 216750 . A C 3364.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.04;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3364,384,0 chrIII 216882 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=16.05;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3098,354,0 chrIII 217089 . C T 3642.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3642,414,0 chrIII 217266 . C T 3497.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.71;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3497,393,0 chrIII 217443 . C T 2990 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=19.80;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3023,339,0 chrIII 217455 . T C 2775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=3.578;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-1.419;QD=17.90;ReadPosRankSum=1.665;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2808,327,0 chrIII 217467 . A C 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.1308;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-0.454;QD=17.47;ReadPosRankSum=1.691;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:2968,345,0 chrIII 218143 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2618,297,0 chrIII 218372 . A C 1862 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1895,222,0 chrIII 218655 . T C 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=4.428;HaplotypeScore=8.7421;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.425;QD=21.11;ReadPosRankSum=1.688;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3335,387,0 chrIII 218906 . A G 2843 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2876,330,0 chrIII 218949 . T C 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.398;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.370;QD=22.57;ReadPosRankSum=-0.155;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3295,364,0 chrIII 219276 . T C 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=4.337;HaplotypeScore=5.8297;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.342;QD=22.70;ReadPosRankSum=1.709;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3473,399,0 chrIII 219318 . A G 2970 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=19.29;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3003,362,0 chrIII 219339 . C T 3185 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.95;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3218,366,0 chrIII 219412 . A G 2521 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.11;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2554,294,0 chrIII 219477 . G A 2500 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.01;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2533,288,0 chrIII 219561 . G A 3472.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.40;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3472,387,0 chrIII 219676 . G C 3506.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.53;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3506,405,0 chrIII 219723 . G C 3320.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.43;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3320,381,0 chrIII 219803 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.3462;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.48;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3530,396,0 chrIII 220054 . T G 2087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=5.257;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=-1.699;QD=20.07;ReadPosRankSum=1.632;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2120,246,0 chrIII 220080 . A G 1954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;MQRankSum=-0.674;QD=18.09;ReadPosRankSum=1.668;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1987,231,0 chrIII 220083 . T C 1966 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;QD=18.37;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1999,228,0 chrIII 220106 . T A 1580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.461;DP=108;Dels=0.00;FS=11.173;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;MQRankSum=-2.207;QD=14.63;ReadPosRankSum=3.756;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:5,103:108:99:1613,183,0 chrIII 220112 . A G 1671 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=15.47;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1704,195,0 chrIII 220158 . G A 2056 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.02;FS=0.000;HaplotypeScore=7.2528;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=18.69;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2089,237,0 chrIII 220477 . T C 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=158;Dels=0.00;FS=2.587;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.103;QD=19.57;ReadPosRankSum=2.903;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:3,153:158:99:3125,360,0 chrIII 220494 . G A 3612.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.89;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3612,399,0 chrIII 220575 . A G 4885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=217;Dels=0.00;FS=12.185;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.780;QD=22.51;ReadPosRankSum=2.958;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:3,212:217:99:4885,549,0 chrIII 220640 . A G 3993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=221;Dels=0.00;FS=9.637;HaplotypeScore=13.9567;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.032;QD=18.07;ReadPosRankSum=2.932;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:3,218:221:99:3993,485,0 chrIII 220823 . T C 4206.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=22.0283;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.29;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:4206,489,0 chrIII 221162 . C T 3103 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.25;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3136,354,0 chrIII 221219 . C T 2868 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0615;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.34;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2901,333,0 chrIII 221240 . C A 2594 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.80;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2627,297,0 chrIII 221489 . A G 2754 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.12;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2787,324,0 chrIII 221705 . T C 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=156;Dels=0.00;FS=3.037;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.610;QD=21.45;ReadPosRankSum=2.418;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3346,387,0 chrIII 221770 . C T 3960.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.7143;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.18;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3960,453,0 chrIII 222227 . C G 5364.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=15.1909;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.55;SB=-3.103e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5364,644,0 chrIII 222347 . C T 4547.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.4424;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.18;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4547,522,0 chrIII 222524 . G T 5365.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=14.5297;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.90;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5365,612,0 chrIII 222776 . A G 4944.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=22.7916;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.04;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,232:235:99:4944,561,0 chrIII 223238 . G C 3322.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.16;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3322,381,0 chrIII 223280 . A G 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.6105;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.490;QD=19.27;ReadPosRankSum=1.708;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2788,324,0 chrIII 223523 . A T 6263.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=16.6165;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.53;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:6263,708,0 chrIII 223676 . T C 8231.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.104;DP=402;Dels=0.00;FS=15.146;HaplotypeScore=23.1163;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.332;QD=20.48;ReadPosRankSum=3.593;SB=-4.996e+03 GT:AD:DP:GQ:PL 1/1:6,396:402:99:8231,939,0 chrIII 224009 . A G 6278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=276;Dels=0.00;FS=6.060;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.661;QD=22.75;ReadPosRankSum=2.880;SB=-3.333e+03 GT:AD:DP:GQ:PL 1/1:3,273:276:99:6278,723,0 chrIII 224038 . C T 5617.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.80;SB=-3.016e+03 GT:AD:DP:GQ:PL 1/1:1,269:270:99:5617,645,0 chrIII 224288 . A G 558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.204;DP=59;Dels=0.00;FS=5.085;HaplotypeScore=11.4203;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=-0.585;QD=9.46;ReadPosRankSum=2.980;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:5,54:59:69:591,69,0 chrIII 224310 . A G 223.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.607;DP=61;Dels=0.00;FS=3.781;HaplotypeScore=34.7591;MLEAC=1;MLEAF=0.500;MQ=52.02;MQ0=0;MQRankSum=2.101;QD=3.66;ReadPosRankSum=-3.921;SB=-1.420e+02 GT:AD:DP:GQ:PL 0/1:32,29:61:99:253,0,217 chrIII 224437 . T C 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=15.4128;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;MQRankSum=1.464;QD=22.72;ReadPosRankSum=1.710;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3522,405,0 chrIII 224491 . T C 3496.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=18.30;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3496,422,0 chrIII 224492 . A G 3513.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=18.49;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3513,419,0 chrIII 224619 . T C 2139 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.474;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;MQRankSum=-0.959;QD=17.53;ReadPosRankSum=-1.703;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2172,246,0 chrIII 224620 . A G 2357 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;MQRankSum=-0.358;QD=19.48;ReadPosRankSum=1.703;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2390,273,0 chrIII 224623 . T C 2322 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;QD=18.73;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2355,273,0 chrIII 224661 . A G 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.4613;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;MQRankSum=0.241;QD=20.07;ReadPosRankSum=1.711;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3311,375,0 chrIII 224674 . T G 3106 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.6229;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=17.95;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,169:173:99:3139,369,0 chrIII 224821 . T C 476 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=14.42;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:60:509,60,0 chrIII 224861 . T G 935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;MQRankSum=0.942;QD=16.40;ReadPosRankSum=1.672;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,56:57:99:968,117,0 chrIII 224874 . T A 981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=0.030;QD=17.21;ReadPosRankSum=1.672;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1014,117,0 chrIII 224924 . T C 1016 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;MQRankSum=-0.490;QD=19.17;ReadPosRankSum=1.667;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1049,126,0 chrIII 224961 . C T 1774 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3471;MLEAC=2;MLEAF=1.00;MQ=37.92;MQ0=0;QD=24.30;SB=-9.601e+01 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1807,213,0 chrIII 224994 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.57;MQ0=0;QD=21.48;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2031,240,0 chrIII 225006 . T C 2214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.4681;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;MQRankSum=-0.729;QD=19.42;ReadPosRankSum=1.671;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2247,267,0 chrIII 225042 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=17.97;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2117,246,0 chrIII 225051 . T C 1953 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=17.59;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1986,234,0 chrIII 225088 . T C 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.685;DP=112;Dels=0.00;FS=6.101;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;MQRankSum=1.316;QD=18.48;ReadPosRankSum=2.775;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2103,249,0 chrIII 225116 . G C 1999 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;QD=18.68;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2032,240,0 chrIII 225143 . G C 2049 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=16.80;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2082,251,0 chrIII 225150 . A T 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.21;MQ0=0;MQRankSum=-0.944;QD=16.50;ReadPosRankSum=1.648;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2062,240,0 chrIII 225173 . G C 1802 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=15.40;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1835,216,0 chrIII 225180 . G C 1504 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.33;MQ0=0;QD=12.97;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1537,191,0 chrIII 225200 . G T 1686 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.6342;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=13.17;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1719,195,0 chrIII 225234 . A G 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=124;Dels=0.00;FS=3.045;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;MQRankSum=0.942;QD=17.19;ReadPosRankSum=2.370;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2165,249,0 chrIII 225256 . C G 2120 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=17.67;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2153,249,0 chrIII 225259 . A G 2174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;MQRankSum=-1.430;QD=17.25;ReadPosRankSum=1.705;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2207,255,0 chrIII 225343 . T A 1754 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=89.3075;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=17.90;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1787,201,0 chrIII 225558 . G C 5110.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.8322;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.33;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,215:219:99:5110,591,0 chrIII 225710 . T C 5802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.433;DP=297;Dels=0.00;FS=2.980;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=0.438;QD=19.54;ReadPosRankSum=2.424;SB=-3.494e+03 GT:AD:DP:GQ:PL 1/1:2,293:297:99:5802,660,0 chrIII 225718 . T C 5780.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=9.4524;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=18.65;SB=-3.820e+03 GT:AD:DP:GQ:PL 1/1:0,310:310:99:5780,660,0 chrIII 226057 . T C 7054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.318;DP=317;Dels=0.00;FS=5.206;HaplotypeScore=19.9503;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.047;QD=22.25;ReadPosRankSum=3.417;SB=-3.068e+03 GT:AD:DP:GQ:PL 1/1:4,311:317:99:7054,822,0 chrIII 226230 . C T 8460.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=387;Dels=0.00;FS=0.000;HaplotypeScore=20.4246;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;MQRankSum=-1.352;QD=21.86;ReadPosRankSum=0.692;SB=-4.271e+03 GT:AD:DP:GQ:PL 1/1:1,384:387:99:8460,960,0 chrIII 226701 . C G 4098.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=6.2473;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=18.80;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4098,471,0 chrIII 226720 . A G 3728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.8179;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=0.928;QD=17.34;ReadPosRankSum=1.716;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:1,210:215:99:3728,449,0 chrIII 226753 . A G 3529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.967;DP=214;Dels=0.00;FS=9.736;HaplotypeScore=12.0207;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-1.904;QD=16.49;ReadPosRankSum=2.928;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:3,207:214:99:3529,425,0 chrIII 226774 . T C 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.0612;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-1.682;QD=16.05;ReadPosRankSum=1.715;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:1,206:210:99:3370,393,0 chrIII 227570 . G A 2101 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.66;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2134,243,0 chrIII 227581 . A T 1946 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.27;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1979,225,0 chrIII 227693 . A T 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=87;Dels=0.00;FS=6.173;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.552;QD=21.93;ReadPosRankSum=0.864;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1941,199,0 chrIII 227763 . C A 2674 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2707,309,0 chrIII 227839 . C T 2609 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.92;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2642,303,0 chrIII 227917 . T C 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=120;Dels=0.00;FS=2.936;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.920;QD=20.85;ReadPosRankSum=2.388;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2535,297,0 chrIII 228055 . T A 2182 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.81;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2215,258,0 chrIII 228130 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.17;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3018,348,0 chrIII 228291 . C A 4164.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.8033;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.93;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4164,471,0 chrIII 228338 . A G 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=176;Dels=0.00;FS=3.918;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.574;QD=20.04;ReadPosRankSum=1.692;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3527,405,0 chrIII 228554 . T C 6666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.688;DP=303;Dels=0.00;FS=7.860;HaplotypeScore=22.9172;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.265;QD=22.00;ReadPosRankSum=3.765;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:5,298:303:99:6666,774,0 chrIII 229345 . T G 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.331;QD=20.20;ReadPosRankSum=1.858;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:2618,300,0 chrIII 229627 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.62;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3529,399,0 chrIII 230047 . C T 2802 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.6435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2835,315,0 chrIII 230267 . A G 2915 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.28;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2948,339,0 chrIII 230329 . T C 2814 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.2562;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.39;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2847,330,0 chrIII 230560 . A G 3166 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.17;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3199,386,0 chrIII 230773 . G A 3904.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.06;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3904,438,0 chrIII 231858 . G T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.46;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3376,384,0 chrIII 231898 . T C 3498.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.10;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3498,419,0 chrIII 232201 . C T 3093 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=19.21;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3126,354,0 chrIII 232215 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=18.73;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3011,339,0 chrIII 232537 . C T 3316.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3316,375,0 chrIII 232890 . C T 2609 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.49;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2642,303,0 chrIII 232933 . A G 2446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.1143;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.342;QD=21.09;ReadPosRankSum=2.939;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:3,112:116:99:2479,285,0 chrIII 233158 . G T 4100.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=24.26;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4100,465,0 chrIII 233245 . T C 3294.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.56;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3294,387,0 chrIII 233301 . G T 3683.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3683,420,0 chrIII 233360 . C T 4523.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=20.19;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4523,510,0 chrIII 233404 . C A 4897.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.0719;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.06;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4897,552,0 chrIII 233424 . C G 4437.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.0870;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.83;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,209:213:99:4437,516,0 chrIII 233531 . G A 4063.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.1338;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.84;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4063,468,0 chrIII 233654 . A G 4351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.6175;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.978;QD=19.96;ReadPosRankSum=1.716;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:1,215:218:99:4351,518,0 chrIII 233678 . G A 4598.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=21.00;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4598,510,0 chrIII 233702 . A G 4528.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.6236;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.58;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4528,522,0 chrIII 233783 . G A 4294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=220;Dels=0.00;FS=3.254;HaplotypeScore=13.9880;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=-0.961;QD=19.52;ReadPosRankSum=0.142;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4294,463,0 chrIII 233797 . A C 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.663;DP=201;Dels=0.00;FS=3.490;HaplotypeScore=5.6000;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;MQRankSum=0.009;QD=17.86;ReadPosRankSum=-0.801;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:3590,408,0 chrIII 233803 . A G 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.348;DP=202;Dels=0.00;FS=1.980;HaplotypeScore=7.9196;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;MQRankSum=-0.151;QD=17.18;ReadPosRankSum=2.320;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:4,198:202:99:3470,396,0 chrIII 233813 . A G 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.723;DP=209;Dels=0.00;FS=3.596;HaplotypeScore=12.1959;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-0.135;QD=15.33;ReadPosRankSum=0.235;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,205:209:99:3238,364,0 chrIII 233870 . T C 3569.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=19.29;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3569,411,0 chrIII 233910 . T C 3423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.963;DP=192;Dels=0.00;FS=10.880;HaplotypeScore=4.3618;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=-0.603;QD=17.83;ReadPosRankSum=2.900;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:3,187:192:99:3423,402,0 chrIII 233911 . C T 3562.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.7844;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=18.46;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3562,408,0 chrIII 233941 . C T 3539.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.43;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3539,405,0 chrIII 234004 . T A 3649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=166;Dels=0.00;FS=3.888;HaplotypeScore=13.0114;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=0.486;QD=21.98;ReadPosRankSum=1.690;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3649,417,0 chrIII 234289 . G A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.8613;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.81;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3565,414,0 chrIII 234551 . A G 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=180;Dels=0.00;FS=5.363;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.291;QD=21.72;ReadPosRankSum=2.916;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:3910,459,0 chrIII 234608 . G A 3775.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.0479;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=19.76;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3775,426,0 chrIII 234617 . G C 3606.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=18.30;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3606,417,0 chrIII 234626 . A G 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.9506;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=0.090;QD=17.77;ReadPosRankSum=1.714;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:3411,381,0 chrIII 234679 . T A 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=4.320;HaplotypeScore=4.9110;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;MQRankSum=1.353;QD=17.57;ReadPosRankSum=1.696;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:3391,387,0 chrIII 234688 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.71;MQ0=0;QD=17.64;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3262,375,0 chrIII 234696 . T G 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=4.145;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;MQRankSum=-0.836;QD=17.86;ReadPosRankSum=1.712;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3140,366,0 chrIII 234792 . G A 2909 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.08;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2942,330,0 chrIII 234883 . C A 2160 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=16.87;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2193,255,0 chrIII 234928 . T C 349 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=3.75;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:45:382,45,0 chrIII 235062 . C T 2774 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=20.86;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2807,330,0 chrIII 235065 . C T 2651 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=20.24;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2684,315,0 chrIII 235070 . G T 2106 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.88;MQ0=0;QD=17.70;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2139,255,0 chrIII 235076 . C T 2057 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;QD=18.04;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2090,243,0 chrIII 235153 . G A 2811 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=22.13;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2844,327,0 chrIII 235155 . T C 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=6.835;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=-1.325;QD=21.60;ReadPosRankSum=2.392;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2820,327,0 chrIII 235472 . A G 3684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=3.141;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.650;QD=21.67;ReadPosRankSum=1.712;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3684,437,0 chrIII 235505 . T C 3622.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.0836;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.06;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3622,414,0 chrIII 236387 . G A 3621.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.21;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3621,402,0 chrIII 238082 . T C 5467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=263;Dels=0.00;FS=6.990;HaplotypeScore=14.0650;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.748;QD=20.79;ReadPosRankSum=2.403;SB=-2.870e+03 GT:AD:DP:GQ:PL 1/1:2,259:263:99:5467,630,0 chrIII 239515 . A G 3621.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.3676;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.23;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3621,414,0 chrIII 239672 . A G 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.0108;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.403;QD=21.05;ReadPosRankSum=1.689;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3368,399,0 chrIII 240922 . T C 4222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=203;Dels=0.00;FS=5.305;HaplotypeScore=24.2307;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=2.025;QD=20.80;ReadPosRankSum=2.955;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:3,198:203:99:4222,483,0 chrIII 241156 . G A 4251.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.3741;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.03;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4251,486,0 chrIII 242917 . C T 5629.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=15.1159;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.32;SB=-3.088e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:5629,645,0 chrIII 245321 . A G 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=3.495;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.775;QD=22.76;ReadPosRankSum=1.704;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2832,324,0 chrIII 245609 . C T 3099 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.52;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3132,357,0 chrIII 245631 . C A 3111 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.60;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3144,345,0 chrIII 246581 . C T 2833 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=19.95;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2866,327,0 chrIII 246755 . C T 1910 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=17.21;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:1943,219,0 chrIII 246789 . C A 1198 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.54;MQ0=0;QD=12.22;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1231,141,0 chrIII 246793 . T C 1194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;MQRankSum=-0.381;QD=11.82;ReadPosRankSum=1.697;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1227,141,0 chrIII 246803 . A G 1159 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=4.221;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.86;MQ0=0;MQRankSum=-1.576;QD=10.44;ReadPosRankSum=1.638;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1192,138,0 chrIII 246807 . A G 1056 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.05;MQ0=0;QD=9.43;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:1089,123,0 chrIII 246813 . T G 1175 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=33.99;MQ0=0;QD=10.31;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1208,138,0 chrIII 246853 . G A 2944 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.5814;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=17.52;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2977,339,0 chrIII 247133 . C G 6736.01 filter AC=2;AF=1.00;AN=2;DP=365;Dels=0.00;FS=0.000;HaplotypeScore=5.8393;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=18.45;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:0,362:365:99:6736,797,0 chrIII 247418 . A G 6186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=282;Dels=0.00;FS=14.429;HaplotypeScore=22.3584;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=1.206;QD=21.94;ReadPosRankSum=3.392;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:4,274:282:99:6186,714,0 chrIII 247491 . G A 5225.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=26.2245;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.41;SB=-2.953e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:5225,576,0 chrIII 247889 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.9845;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=14.89;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1343,150,0 chrIII 247917 . C T 807 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.8519;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=15.52;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,48:52:96:840,96,0 chrIII 247988 . A G 115.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.330;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.7529;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;MQRankSum=1.362;QD=2.74;ReadPosRankSum=-1.180;SB=-4.231e+02 GT:AD:DP:GQ:PL 1/1:2,39:42:18:148,18,0 chrIII 248057 . A G 2896 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.94;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2929,330,0 chrIII 248856 . C G 4007.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.1182;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.87;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4007,459,0 chrIII 249536 . A G 4958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=0.789;QD=19.07;ReadPosRankSum=1.692;SB=-3.161e+03 GT:AD:DP:GQ:PL 1/1:1,257:260:99:4958,570,0 chrIII 249541 . C G 4270.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=16.81;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,250:254:99:4270,518,0 chrIII 250185 . T A 1576 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=6.0197;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1609,183,0 chrIII 250253 . T A 1601 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1634,186,0 chrIII 250649 . G T 4371.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.6923;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.53;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4371,495,0 chrIII 257960 . T C 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=132;Dels=0.00;FS=9.152;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.074;QD=20.71;ReadPosRankSum=2.393;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2767,338,0 chrIII 258780 . T G 5058.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.7267;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.86;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5058,582,0 chrIII 258915 . G A 4164.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.03;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4164,477,0 chrIII 259203 . A C 1356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.531;QD=18.08;ReadPosRankSum=1.594;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1389,171,0 chrIII 261764 . G A 4844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=252;Dels=0.00;FS=4.720;HaplotypeScore=6.8818;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.124;QD=19.22;ReadPosRankSum=1.471;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:1,251:252:99:4844,572,0 chrIII 261775 . G A 5204.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=15.3303;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.86;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:5204,591,0 chrIII 262801 . A G 1751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=89;Dels=0.00;FS=3.059;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-0.125;QD=19.67;ReadPosRankSum=2.394;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1784,204,0 chrIII 262823 . G A 1578 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.01;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1611,183,0 chrIII 262837 . T A 1429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=0.169;QD=17.43;ReadPosRankSum=1.648;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1462,168,0 chrIII 262854 . T C 1335 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=16.28;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1368,153,0 chrIII 264441 . A G 5024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.331;QD=20.85;ReadPosRankSum=2.409;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:2,239:241:99:5024,582,0 chrIII 264522 . C T 4135.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=15.7997;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.57;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4135,465,0 chrIII 265026 . G A 4245.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.2515;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=22.23;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4245,477,0 chrIII 265240 . T C 4760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=231;Dels=0.00;FS=3.512;HaplotypeScore=13.3511;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.581;QD=20.61;ReadPosRankSum=1.218;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:1,228:231:99:4760,560,0 chrIII 266863 . C T 3463.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.61;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3463,399,0 chrIII 266890 . A C 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=168;Dels=0.00;FS=2.996;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.576;QD=20.70;ReadPosRankSum=2.420;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3477,405,0 chrIII 267008 . C T 4260.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.6567;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.19;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4260,483,0 chrIII 267157 . A G 3157 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=154;Dels=0.00;FS=3.614;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.832;QD=20.50;ReadPosRankSum=0.450;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3190,378,0 chrIII 267162 . G A 3278.01 SnpCluster AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=20.49;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3278,363,0 chrIII 267166 . T C 3083 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=166;Dels=0.00;FS=3.509;HaplotypeScore=3.7084;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;MQRankSum=-0.981;QD=18.57;ReadPosRankSum=1.711;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3116,363,0 chrIII 267253 . A G 3850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=181;Dels=0.00;FS=2.562;HaplotypeScore=11.0504;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.639;QD=21.27;ReadPosRankSum=2.961;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:3850,453,0 chrIII 267271 . A C 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=179;Dels=0.02;FS=0.000;HaplotypeScore=11.8308;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.723;QD=20.36;ReadPosRankSum=2.422;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3645,420,0 chrIII 267339 . A G 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.5880;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.254;QD=20.92;ReadPosRankSum=1.659;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3025,365,0 chrIII 267542 . C T 3119 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.12;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3152,354,0 chrIII 267603 . A G 3201 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.8977;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.39;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3234,384,0 chrIII 267682 . T C 3497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.955;QD=22.13;ReadPosRankSum=1.688;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3497,396,0 chrIII 267793 . C G 4003.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.9447;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.82;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4003,497,0 chrIII 267916 . G T 3037 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.7932;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=17.55;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3070,348,0 chrIII 268012 . T A 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=180;Dels=0.00;FS=10.196;HaplotypeScore=14.6514;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.416;QD=20.72;ReadPosRankSum=2.381;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3729,426,0 chrIII 268066 . C A 3091 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.2224;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.32;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3124,360,0 chrIII 268204 . T C 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=27.0818;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.441;QD=15.01;ReadPosRankSum=1.630;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:2584,297,0 chrIII 268449 . G A 4444.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.78;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4444,501,0 chrIII 268657 . G A 4411.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;DP=315;Dels=0.00;FS=152.505;HaplotypeScore=11.7905;MLEAC=1;MLEAF=0.500;MQ=43.59;MQ0=5;MQRankSum=9.080;QD=14.00;ReadPosRankSum=0.662;SB=-2.538e+03 GT:AD:DP:GQ:PL 0/1:79,236:315:99:4411,0,161 chrIII 268696 . T C,G 4736.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.841;DP=311;Dels=0.00;FS=10.958;HaplotypeScore=21.3378;MLEAC=1,1;MLEAF=0.500,0.500;MQ=36.88;MQ0=15;MQRankSum=1.193;QD=15.23;ReadPosRankSum=2.963;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/2:3,89,219:311:99:4736,3484,3325,1253,0,785 chrIII 268711 . C T 1001.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.278;DP=300;Dels=0.00;FS=277.992;HaplotypeScore=12.0149;MLEAC=1;MLEAF=0.500;MQ=34.08;MQ0=18;MQRankSum=-5.681;QD=3.34;ReadPosRankSum=-0.365;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:204,96:300:99:1031,0,3130 chrIII 268753 . G A 5601.01 filter AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=17.9417;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=32;QD=17.18;SB=-3.290e+03 GT:AD:DP:GQ:PL 1/1:0,323:326:99:5601,633,0 chrIII 268780 . G A 6920.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.621;DP=406;Dels=0.00;FS=5.011;HaplotypeScore=34.5257;MLEAC=2;MLEAF=1.00;MQ=32.43;MQ0=33;MQRankSum=0.371;QD=17.04;ReadPosRankSum=0.102;SB=-3.594e+03 GT:AD:DP:GQ:PL 1/1:4,400:406:99:6920,709,0 chrIII 268831 . C A 3630.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.745;DP=522;Dels=0.00;FS=33.611;HaplotypeScore=22.0758;MLEAC=1;MLEAF=0.500;MQ=36.26;MQ0=19;MQRankSum=1.050;QD=6.95;ReadPosRankSum=-0.197;SB=-2.026e+03 GT:AD:DP:GQ:PL 0/1:266,251:522:99:3630,0,4000 chrIII 268864 . T G 9292.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=473;Dels=0.00;FS=5.839;HaplotypeScore=29.5650;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=0;MQRankSum=-0.606;QD=19.64;ReadPosRankSum=2.904;SB=-4.237e+03 GT:AD:DP:GQ:PL 1/1:3,467:473:99:9292,1082,0 chrIII 268891 . T C 724.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.216;DP=406;Dels=0.00;FS=113.971;HaplotypeScore=81.5121;MLEAC=1;MLEAF=0.500;MQ=33.83;MQ0=0;MQRankSum=-1.475;QD=1.78;ReadPosRankSum=-1.482;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:297,106:406:99:754,0,5174 chrIII 268913 . T C 4443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.889;DP=294;Dels=0.00;FS=162.698;HaplotypeScore=14.8597;MLEAC=2;MLEAF=1.00;MQ=33.14;MQ0=0;MQRankSum=0.011;QD=15.11;ReadPosRankSum=4.938;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:70,220:293:99:4443,346,0 chrIII 268923 . G C 5816.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=21.9114;MLEAC=2;MLEAF=1.00;MQ=33.08;MQ0=0;QD=17.73;SB=-3.316e+03 GT:AD:DP:GQ:PL 1/1:0,325:328:99:5816,680,0 chrIII 268932 . C T 3948.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.999;DP=356;Dels=0.00;FS=99.603;HaplotypeScore=15.3917;MLEAC=1;MLEAF=0.500;MQ=34.40;MQ0=2;MQRankSum=-2.611;QD=11.09;ReadPosRankSum=7.346;SB=-1.711e+03 GT:AD:DP:GQ:PL 0/1:117,239:356:99:3948,0,1016 chrIII 268966 . C T 3926.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.794;DP=407;Dels=0.00;FS=76.053;HaplotypeScore=16.2482;MLEAC=1;MLEAF=0.500;MQ=34.30;MQ0=12;MQRankSum=-1.376;QD=9.65;ReadPosRankSum=-2.272;SB=-2.173e+03 GT:AD:DP:GQ:PL 0/1:133,269:407:99:3926,0,1127 chrIII 268984 . G A 3615.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.894;DP=418;Dels=0.00;FS=92.608;HaplotypeScore=19.3662;MLEAC=1;MLEAF=0.500;MQ=33.36;MQ0=21;MQRankSum=-1.601;QD=8.65;ReadPosRankSum=-2.387;SB=-2.276e+03 GT:AD:DP:GQ:PL 0/1:142,275:418:99:3615,0,1410 chrIII 269023 . T C,G 6633.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.607;DP=477;Dels=0.00;FS=0.000;HaplotypeScore=43.1512;MLEAC=1,1;MLEAF=0.500,0.500;MQ=31.45;MQ0=30;MQRankSum=-1.020;QD=13.91;ReadPosRankSum=1.693;SB=-3.199e+03 GT:AD:DP:GQ:PL 1/2:1,134,338:477:99:6633,5023,4813,1609,0,918 chrIII 269038 . C T 492.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;DP=457;Dels=0.00;FS=138.986;HaplotypeScore=14.7301;MLEAC=1;MLEAF=0.500;MQ=28.64;MQ0=30;MQRankSum=-3.222;QD=1.08;ReadPosRankSum=-1.951;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:338,118:457:99:522,0,5133 chrIII 269059 . T C 5163.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.212;DP=407;Dels=0.00;FS=171.009;HaplotypeScore=15.4237;MLEAC=1;MLEAF=0.500;MQ=30.12;MQ0=27;MQRankSum=1.860;QD=12.69;ReadPosRankSum=-1.418;SB=-2.998e+03 GT:AD:DP:GQ:PL 0/1:105,300:407:99:5163,0,338 chrIII 269080 . G A 6854.01 filter AC=2;AF=1.00;AN=2;DP=368;Dels=0.00;FS=0.000;HaplotypeScore=13.4322;MLEAC=2;MLEAF=1.00;MQ=30.15;MQ0=23;QD=18.63;SB=-3.291e+03 GT:AD:DP:GQ:PL 1/1:0,368:368:99:6854,771,0 chrIII 269158 . C A 3915.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=257;Dels=0.00;FS=26.223;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=38.42;MQ0=10;MQRankSum=4.413;QD=15.23;ReadPosRankSum=-0.597;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:25,231:257:99:3915,301,0 chrIII 269177 . A G 4642.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.389;DP=271;Dels=0.00;FS=5.050;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=6;MQRankSum=0.536;QD=17.13;ReadPosRankSum=3.422;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:4,267:271:99:4642,534,0 chrIII 269224 . A G 4210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=261;Dels=0.00;FS=2.632;HaplotypeScore=14.6819;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;MQRankSum=0.024;QD=16.13;ReadPosRankSum=2.430;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:2,255:261:99:4210,497,0 chrIII 269353 . G A 3479.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=20.46;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3479,396,0 chrIII 269359 . T C 3323.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=19.10;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3323,381,0 chrIII 269369 . T A 3305.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=19.44;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3305,369,0 chrIII 269395 . T C 3479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=191;Dels=0.00;FS=2.980;HaplotypeScore=8.9081;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=0.534;QD=18.21;ReadPosRankSum=2.372;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3479,402,0 chrIII 269495 . A G 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=196;Dels=0.00;FS=9.721;HaplotypeScore=21.4563;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.119;QD=20.77;ReadPosRankSum=2.809;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:3,192:196:99:4071,465,0 chrIII 269719 . G C 4168.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.05;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4168,489,0 chrIII 269744 . T A 3739.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.61;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3739,420,0 chrIII 269842 . T C 4537.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=22.02;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4537,545,0 chrIII 269874 . T C 4678.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=21.86;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4678,543,0 chrIII 269921 . G A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;QD=19.99;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3579,414,0 chrIII 269952 . T C 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;MQRankSum=1.006;QD=20.91;ReadPosRankSum=1.709;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3128,369,0 chrIII 269990 . A T 2252.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.061;DP=311;Dels=0.00;FS=37.865;HaplotypeScore=447.6638;MLEAC=1;MLEAF=0.500;MQ=33.14;MQ0=0;MQRankSum=1.455;QD=7.24;ReadPosRankSum=1.911;SB=-9.110e+02 GT:AD:DP:GQ:PL 0/1:194,117:311:99:2282,0,196 chrIII 270018 . C T 3124 PASS AC=2;AF=1.00;AN=2;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=453.7149;MLEAC=2;MLEAF=1.00;MQ=30.78;MQ0=0;QD=9.30;SB=-3.675e+03 GT:AD:DP:GQ:PL 1/1:0,336:336:99:3157,369,0 chrIII 270022 . G A 1452.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.313;DP=352;Dels=0.00;FS=30.802;HaplotypeScore=4.9763;MLEAC=1;MLEAF=0.500;MQ=31.11;MQ0=0;MQRankSum=-1.431;QD=4.13;ReadPosRankSum=4.630;SB=-2.910e+02 GT:AD:DP:GQ:PL 0/1:262,90:352:99:1482,0,877 chrIII 270055 . G A 1138.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.819;DP=330;Dels=0.00;FS=12.032;HaplotypeScore=14.5390;MLEAC=1;MLEAF=0.500;MQ=33.66;MQ0=0;MQRankSum=-4.739;QD=3.45;ReadPosRankSum=-2.296;SB=-1.642e+03 GT:AD:DP:GQ:PL 0/1:120,209:330:99:1168,0,1695 chrIII 270062 . A G 833.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;DP=321;Dels=0.00;FS=14.218;HaplotypeScore=13.9350;MLEAC=1;MLEAF=0.500;MQ=34.01;MQ0=0;MQRankSum=-4.930;QD=2.60;ReadPosRankSum=-2.556;SB=-1.209e+03 GT:AD:DP:GQ:PL 0/1:141,179:321:99:863,0,2071 chrIII 270065 . G A 734.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.151;DP=313;Dels=0.00;FS=10.849;HaplotypeScore=7.6803;MLEAC=1;MLEAF=0.500;MQ=33.98;MQ0=0;MQRankSum=-7.294;QD=2.35;ReadPosRankSum=-4.433;SB=-1.077e+03 GT:AD:DP:GQ:PL 0/1:141,172:313:99:764,0,2364 chrIII 270074 . A G 347.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.554;DP=301;Dels=0.00;FS=9.361;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=34.77;MQ0=0;MQRankSum=-5.431;QD=1.15;ReadPosRankSum=-7.956;SB=-7.240e+02 GT:AD:DP:GQ:PL 0/1:159,141:301:99:377,0,2842 chrIII 270078 . T C 325.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.301;DP=300;Dels=0.00;FS=10.560;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=35.31;MQ0=0;MQRankSum=-6.163;QD=1.08;ReadPosRankSum=-8.726;SB=-6.640e+02 GT:AD:DP:GQ:PL 0/1:171,129:300:99:355,0,3074 chrIII 270082 . C T 224.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.586;DP=288;Dels=0.00;FS=8.844;HaplotypeScore=5.6640;MLEAC=1;MLEAF=0.500;MQ=36.01;MQ0=0;MQRankSum=-5.642;QD=0.78;ReadPosRankSum=-11.889;SB=-5.920e+02 GT:AD:DP:GQ:PL 0/1:170,118:288:99:254,0,3001 chrIII 270367 . T C 4772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=223;Dels=0.00;FS=3.483;HaplotypeScore=9.8757;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.577;QD=21.40;ReadPosRankSum=1.701;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:4772,552,0 chrIII 270414 . T C 4663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=216;Dels=0.00;FS=11.878;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.921;QD=21.59;ReadPosRankSum=2.939;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:3,212:216:99:4663,537,0 chrIII 270582 . A G 4139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=199;Dels=0.00;FS=2.978;HaplotypeScore=14.4338;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.069;QD=20.80;ReadPosRankSum=2.412;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:3,194:199:99:4139,480,0 chrIII 271106 . G A 7752.01 PASS AC=2;AF=1.00;AN=2;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=39.2907;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-2.942e+03 GT:AD:DP:GQ:PL 1/1:0,332:336:99:7752,864,0 chrIII 271223 . A C 10356.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=499;Dels=0.00;FS=5.350;HaplotypeScore=24.9671;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=0.903;QD=20.75;ReadPosRankSum=1.725;SB=-3.743e+03 GT:AD:DP:GQ:PL 1/1:1,496:499:99:10356,1197,0 chrIII 271309 . T C 11373.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=546;Dels=0.00;FS=0.000;HaplotypeScore=42.9661;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=-0.677;QD=20.83;ReadPosRankSum=1.694;SB=-5.630e+03 GT:AD:DP:GQ:PL 1/1:1,541:546:99:11373,1296,0 chrIII 271756 . G C 7779.01 filter AC=2;AF=1.00;AN=2;DP=377;Dels=0.00;FS=0.000;HaplotypeScore=32.8647;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.63;SB=-3.672e+03 GT:AD:DP:GQ:PL 1/1:0,371:377:99:7779,891,0 chrIII 271920 . C T 6130.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=22.2137;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.71;SB=-3.472e+03 GT:AD:DP:GQ:PL 1/1:0,292:296:99:6130,693,0 chrIII 271948 . G C 5693.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=11.0410;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.50;SB=-3.299e+03 GT:AD:DP:GQ:PL 1/1:0,290:292:99:5693,666,0 chrIII 272072 . G A 6352.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=20.6490;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.29;SB=-3.119e+03 GT:AD:DP:GQ:PL 1/1:0,310:313:99:6352,717,0 chrIII 272125 . G A 4995.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=16.9882;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.64;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:4995,555,0 chrIII 272348 . A G 3974.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.2371;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.97;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3974,482,0 chrIII 272618 . G A 4400.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.5820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4400,498,0 chrIII 272975 . A C 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.433;QD=21.72;ReadPosRankSum=1.699;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2314,264,0 chrIII 272988 . A G 2096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=101;Dels=0.00;FS=6.141;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=0.130;QD=20.75;ReadPosRankSum=2.891;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:3,98:101:99:2129,255,0 chrIII 273072 . T C 1619 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=18.83;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1652,189,0 chrIII 273250 . A G 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;MQRankSum=-0.540;QD=21.74;ReadPosRankSum=2.394;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1968,231,0 chrIII 273260 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=22.20;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2031,228,0 chrIII 273312 . A G 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=15.5308;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;MQRankSum=0.977;QD=19.96;ReadPosRankSum=2.369;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1889,225,0 chrIII 273348 . A T 1632 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.02;FS=0.000;HaplotypeScore=80.3615;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=20.15;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1665,189,0 chrIII 273439 . C T 1371 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=37.68;MQ0=0;QD=12.24;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1404,156,0 chrIII 273446 . A G 1366 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;QD=11.02;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1399,162,0 chrIII 273450 . A T 1302 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;QD=10.59;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1335,153,0 chrIII 273452 . T G 1287 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=0;QD=10.55;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1320,150,0 chrIII 273474 . T C 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.2020;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;MQRankSum=-1.289;QD=11.94;ReadPosRankSum=1.704;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:1526,177,0 chrIII 273518 . T C 1550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;MQRankSum=-0.050;QD=15.05;ReadPosRankSum=1.698;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1583,183,0 chrIII 273523 . T G 1654 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=16.54;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1687,195,0 chrIII 273723 . T G 3472.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=22.69;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3472,411,0 chrIII 273881 . G A 2818 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.84;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2851,330,0 chrIII 273911 . C G 2595 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.93;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2628,309,0 chrIII 273985 . A G 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=9.072;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.418;QD=18.37;ReadPosRankSum=2.415;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2679,312,0 chrIII 273998 . C T 3000 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=19.48;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3033,342,0 chrIII 274039 . C T 2945 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.76;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2978,342,0 chrIII 274091 . G A 2588 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=18.62;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2621,306,0 chrIII 274100 . T A 2445 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=18.38;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2478,279,0 chrIII 274122 . A C 1955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=1.150;QD=15.89;ReadPosRankSum=1.590;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:1988,228,0 chrIII 274124 . T A 2027 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=16.89;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2060,231,0 chrIII 274173 . G A 2489 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=18.57;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2522,291,0 chrIII 274250 . C T 3913.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=22.23;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3913,450,0 chrIII 274321 . A G 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=3.424;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.247;QD=23.45;ReadPosRankSum=1.687;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3658,423,0 chrIII 274433 . A C 4935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=211;Dels=0.00;FS=5.588;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.577;QD=23.39;ReadPosRankSum=1.699;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:4935,555,0 chrIII 274530 . A G 4695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.944;DP=236;Dels=0.00;FS=22.805;HaplotypeScore=23.0633;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.463;QD=19.89;ReadPosRankSum=4.127;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:6,228:236:99:4695,575,0 chrIII 274645 . T C 6134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=284;Dels=0.00;FS=6.066;HaplotypeScore=18.5182;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.439;QD=21.60;ReadPosRankSum=2.954;SB=-3.408e+03 GT:AD:DP:GQ:PL 1/1:3,278:284:99:6134,714,0 chrIII 274679 . T C 5773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=265;Dels=0.00;FS=3.025;HaplotypeScore=18.9790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.425;QD=21.78;ReadPosRankSum=2.412;SB=-3.209e+03 GT:AD:DP:GQ:PL 1/1:2,261:265:99:5773,672,0 chrIII 275018 . A C 4333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=16.5877;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.286;QD=21.14;ReadPosRankSum=1.715;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:1,201:205:99:4333,498,0 chrIII 275765 . C T 3102 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3135,357,0 chrIII 276449 . C T 1675 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.9797;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.18;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1708,195,0 chrIII 276551 . C T 2066 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.46;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2099,240,0 chrIII 276586 . A G 2206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=94;Dels=0.00;FS=6.163;HaplotypeScore=6.6902;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.411;QD=23.47;ReadPosRankSum=2.317;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:2,91:94:99:2239,258,0 chrIII 276617 . C T 1921 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.83;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1954,228,0 chrIII 277187 . C T 3345.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.78;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3345,372,0 chrIII 277277 . T C 3545.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=23.95;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3545,405,0 chrIII 277310 . G A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.69;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3494,399,0 chrIII 277322 . T G 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.5687;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.078;QD=21.26;ReadPosRankSum=1.687;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3316,384,0 chrIII 277384 . T C 3918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.255;DP=196;Dels=0.00;FS=8.716;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=0.646;QD=19.99;ReadPosRankSum=3.335;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:4,192:196:99:3918,450,0 chrIII 277421 . A G 4114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=197;Dels=0.00;FS=3.055;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-1.393;QD=20.88;ReadPosRankSum=1.661;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:1,193:197:99:4114,474,0 chrIII 277448 . C A 3623.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.35;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3623,402,0 chrIII 277511 . A G 3561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.9393;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=1.473;QD=20.47;ReadPosRankSum=1.692;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3561,408,0 chrIII 278153 . A G 2968 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.5243;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.83;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3001,339,0 chrIII 278405 . C T 3375.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=19.97;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3375,381,0 chrIII 278428 . C T 3047 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=17.31;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3080,339,0 chrIII 278431 . A G 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=181;Dels=0.00;FS=12.233;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;MQRankSum=-0.045;QD=16.48;ReadPosRankSum=2.861;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:3,177:181:99:3016,348,0 chrIII 278462 . T A 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=0.229;QD=14.09;ReadPosRankSum=1.695;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:2711,309,0 chrIII 278483 . A G 3159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=3.346;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=0.147;QD=16.80;ReadPosRankSum=1.714;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3192,372,0 chrIII 278525 . G A 4364.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.9326;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.50;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4364,486,0 chrIII 278558 . A G 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-0.279;QD=22.31;ReadPosRankSum=1.695;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4150,474,0 chrIII 278585 . G A 4281.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.53;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4281,483,0 chrIII 278662 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=22.89;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3800,429,0 chrIII 278826 . A G 3639.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.9803;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.33;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3639,423,0 chrIII 278927 . G A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.37;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3624,420,0 chrIII 279149 . T C 4518.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.93;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4518,525,0 chrIII 279350 . G A 3637.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.4443;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.32;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3637,414,0 chrIII 279627 . C T 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.469;DP=146;Dels=0.00;FS=3.760;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.944;QD=24.59;ReadPosRankSum=-0.991;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3590,382,0 chrIII 279891 . T G 3826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=177;Dels=0.00;FS=3.342;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.302;QD=21.62;ReadPosRankSum=1.693;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3826,447,0 chrIII 280381 . C T 2240 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.09;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2273,258,0 chrIII 280971 . G A 4119.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.1132;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4119,474,0 chrIII 281388 . G A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.49;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4065,459,0 chrIII 281666 . T C 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=6.653;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.204;QD=21.83;ReadPosRankSum=2.417;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3297,378,0 chrIII 281752 . C T 3042 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3075,354,0 chrIII 281823 . A T 3070 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.62;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3103,351,0 chrIII 282387 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.27;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3139,357,0 chrIII 282696 . G A 3012 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.95;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3045,351,0 chrIII 282703 . T C 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.839;QD=19.97;ReadPosRankSum=1.689;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3208,372,0 chrIII 282870 . T A 2448 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.6077;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=18.83;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2481,282,0 chrIII 282873 . A G 2322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.1303;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=-0.251;QD=18.28;ReadPosRankSum=1.704;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,123:127:99:2355,270,0 chrIII 282907 . A G 1966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.098;DP=122;Dels=0.00;FS=8.436;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.093;QD=16.11;ReadPosRankSum=3.386;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:4,118:122:99:1999,228,0 chrIII 283431 . G A 4372.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.54;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4372,507,0 chrIII 283554 . T C 4004.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.5564;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4004,465,0 chrIII 283959 . G A 4166.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=17.5176;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4166,468,0 chrIII 284105 . G A 4196.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=15.7036;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.44;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4196,474,0 chrIII 284523 . T C 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=3.462;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.834;QD=22.09;ReadPosRankSum=1.689;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3600,408,0 chrIII 284830 . C T 3803.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.05;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3803,429,0 chrIII 285080 . G A 3406.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.99;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3406,381,0 chrIII 285687 . C T 4068.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.48;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4068,471,0 chrIII 285783 . G A 3302.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.01;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3302,375,0 chrIII 285816 . C G 3589.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3589,431,0 chrIII 286515 . T C 2456 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2489,288,0 chrIII 286628 . G A 2337 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.8065;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2370,276,0 chrIII 286827 . G A 3576.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3576,402,0 chrIII 287064 . T C 2882 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,131:137:99:2915,333,0 chrIII 287188 . A T 1242 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.41;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1275,144,0 chrIII 287526 . T C 3483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5599;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.165;QD=22.18;ReadPosRankSum=1.688;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3483,405,0 chrIII 287614 . A G 4420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=195;Dels=0.00;FS=6.272;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.961;QD=22.67;ReadPosRankSum=2.411;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:2,191:195:99:4420,501,0 chrIII 288008 . G C 2769 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.7701;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.88;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2802,324,0 chrIII 288094 . A T 2621 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.02;FS=0.000;HaplotypeScore=6.8768;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.86;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2654,294,0 chrIII 288096 . T G 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.377;DP=134;Dels=0.00;FS=2.020;HaplotypeScore=6.8768;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.128;QD=19.10;ReadPosRankSum=3.175;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:4,126:134:99:2592,303,0 chrIII 288197 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.47;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2873,321,0 chrIII 288246 . C T 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.086;DP=136;Dels=0.00;FS=3.010;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.215;QD=21.36;ReadPosRankSum=0.543;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2938,310,0 chrIII 288380 . T A 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=3.116;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-1.427;QD=23.49;ReadPosRankSum=1.677;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2993,339,0 chrIII 288951 . G C 2741 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.93;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2774,315,0 chrIII 288982 . G A 2275 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.4445;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.96;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2308,261,0 chrIII 289278 . T G 2773 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.11;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2806,318,0 chrIII 289289 . C T 2684 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.18;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2717,306,0 chrIII 289803 . T C 4723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=217;Dels=0.00;FS=2.567;HaplotypeScore=15.5756;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-1.136;QD=21.77;ReadPosRankSum=2.958;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:3,212:217:99:4723,537,0 chrIII 289843 . T C 3821.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.4008;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.30;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:3821,447,0 chrIII 289856 . G A 3574.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.5446;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.01;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3574,405,0 chrIII 290204 . G A 3987.01 SnpCluster AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=19.45;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3987,459,0 chrIII 290208 . A G 3880.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.418;DP=206;Dels=0.00;FS=5.221;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=-1.902;QD=18.83;ReadPosRankSum=3.409;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:4,201:206:99:3880,461,0 chrIII 290211 . C G 3970.01 SnpCluster AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=19.27;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:3970,462,0 chrIII 290265 . A G 4339.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.81;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4339,501,0 chrIII 290295 . T C 4679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=216;Dels=0.00;FS=4.612;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.340;QD=21.66;ReadPosRankSum=1.716;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4679,537,0 chrIII 290329 . C T 3737.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.76;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3737,426,0 chrIII 290645 . C T 2826 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=21.74;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2859,324,0 chrIII 290657 . T C 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=0.084;QD=21.59;ReadPosRankSum=1.704;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2710,309,0 chrIII 290826 . T C 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=3.820;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=1.025;QD=22.26;ReadPosRankSum=1.661;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3295,384,0 chrIII 291044 . G A 2588 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.02;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=20.22;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2621,294,0 chrIII 291045 . C T 2469 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.02;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=19.14;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2502,285,0 chrIII 291099 . G A 2150 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.8532;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.37;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2183,246,0 chrIII 291194 . A G 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=3.241;HaplotypeScore=88.0867;MLEAC=2;MLEAF=1.00;MQ=39.73;MQ0=0;MQRankSum=-0.896;QD=14.41;ReadPosRankSum=1.672;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1705,207,0 chrIII 291202 . C A 276 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.269;DP=116;Dels=0.00;FS=11.151;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.29;MQ0=0;MQRankSum=2.320;QD=2.38;ReadPosRankSum=-6.140;SB=3.00 GT:AD:DP:GQ:PL 1/1:97,19:116:36:309,36,0 chrIII 291211 . T A 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=33.79;MQ0=0;MQRankSum=-1.291;QD=11.08;ReadPosRankSum=1.701;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:1252,147,0 chrIII 291220 . A G 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=117;Dels=0.00;FS=3.705;HaplotypeScore=82.1872;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;MQRankSum=0.527;QD=10.42;ReadPosRankSum=1.702;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:1252,147,0 chrIII 291282 . G A 2273 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.5111;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=15.78;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2306,270,0 chrIII 291321 . C T 2690 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=22.05;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2723,309,0 chrIII 291695 . A T 1909 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1942,219,0 chrIII 292177 . C A 1889 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.53;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1922,216,0 chrIII 292183 . G A 1983 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=20.44;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2016,225,0 chrIII 292432 . C T 752 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:90:785,90,0 chrIII 292449 . C T 925 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=19.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:958,105,0 chrIII 292484 . T A 1011 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1044,117,0 chrIII 292658 . A T 1127 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=60.75;MQ0=0;QD=23.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1160,132,0 chrIII 292684 . A G 1438 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1169;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=23.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1471,171,0 chrIII 292890 . C T 2301 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=19.02;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2334,261,0 chrIII 292937 . C T 1513 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=15.93;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1546,174,0 chrIII 292964 . G T 1461 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;QD=16.99;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1494,174,0 chrIII 293719 . A T 944.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;DP=237;Dels=0.00;FS=5.355;HaplotypeScore=13.6712;MLEAC=1;MLEAF=0.500;MQ=46.76;MQ0=20;MQRankSum=1.526;QD=3.98;ReadPosRankSum=-1.054;SB=-3.880e+02 GT:AD:DP:GQ:PL 0/1:171,66:237:99:974,0,2861 chrIII 293855 . G A 3101 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=21.69;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3134,360,0 chrIII 293909 . A C 3557.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.30;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3557,414,0 chrIII 294256 . T A 3664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=169;Dels=0.00;FS=7.274;HaplotypeScore=8.8772;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=1.353;QD=21.68;ReadPosRankSum=2.420;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3664,414,0 chrIII 294389 . A T 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=4.033;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;MQRankSum=-0.278;QD=23.19;ReadPosRankSum=1.711;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3757,429,0 chrIII 294569 . C A 2687 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=1;QD=18.53;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2720,309,0 chrIII 294571 . C T 2185.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.394;DP=143;Dels=0.00;FS=25.992;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.24;MQ0=1;MQRankSum=1.000;QD=15.28;ReadPosRankSum=-0.378;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:16,126:143:21:2218,21,0 chrIII 294583 . G C 2101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.491;DP=142;Dels=0.00;FS=24.171;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.89;MQ0=1;MQRankSum=0.957;QD=14.80;ReadPosRankSum=1.385;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:13,129:142:99:2134,107,0 chrIII 294593 . T A 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=137;Dels=0.00;FS=3.878;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=1;MQRankSum=-1.732;QD=16.65;ReadPosRankSum=1.705;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,126:137:99:2314,261,0 chrIII 294636 . T A 1842 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.40;MQ0=0;QD=16.16;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1875,213,0 chrIII 294655 . G T 1823 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=18.23;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1856,210,0 chrIII 294667 . T C 1818 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=19.14;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1851,213,0 chrIII 294842 . T A 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.343;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=0.784;QD=23.44;ReadPosRankSum=1.586;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2260,252,0 chrIII 294897 . A T 2317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=104;Dels=0.00;FS=5.077;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.521;QD=22.28;ReadPosRankSum=1.665;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2350,270,0 chrIII 294936 . T C 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.8425;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.436;QD=22.87;ReadPosRankSum=1.626;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:2,130:134:99:3098,354,0 chrIII 295007 . G A 2772 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.54;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2805,327,0 chrIII 295142 . A G 2338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=0.664;QD=21.06;ReadPosRankSum=2.882;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2371,279,0 chrIII 295415 . G T 696 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=11.80;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:84:729,84,0 chrIII 295441 . C T 1192 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=17.28;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1225,141,0 chrIII 295646 . T C 2293 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=19.0375;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=19.27;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2326,273,0 chrIII 295703 . T A 2546 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=19.74;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2579,297,0 chrIII 295923 . C T 2815 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.49;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2848,315,0 chrIII 295937 . T G 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=4.771;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.631;QD=20.78;ReadPosRankSum=1.705;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2735,312,0 chrIII 296050 . A T 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=3.501;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.387;QD=22.59;ReadPosRankSum=1.665;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2360,267,0 chrIII 296219 . C T 2474 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.29;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2507,285,0 chrIII 296281 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.4291;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=21.79;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2582,294,0 chrIII 296384 . C A 1100 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=21.57;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1133,129,0 chrIII 296406 . C T 999 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.72;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1032,111,0 chrIII 296438 . G C 1038 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=21.18;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1071,123,0 chrIII 296447 . C A 994 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=19.49;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1027,117,0 chrIII 296505 . C A 1204 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.70;MQ0=0;QD=20.76;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1237,138,0 chrIII 296603 . C A 1421 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.08;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1454,165,0 chrIII 296655 . C G 1027 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=21.40;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1060,132,0 chrIII 296676 . A T 1160 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=18.12;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1193,138,0 chrIII 296689 . C A 1239 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=16.97;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1272,150,0 chrIII 296732 . A T 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=98;Dels=0.00;FS=5.888;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;MQRankSum=0.701;QD=17.51;ReadPosRankSum=2.846;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:3,95:98:99:1749,207,0 chrIII 296738 . C T 1809 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;QD=18.84;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1842,207,0 chrIII 296757 . A G 1798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=2.673;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;MQRankSum=1.416;QD=17.80;ReadPosRankSum=2.376;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:2,98:101:99:1831,213,0 chrIII 296914 . G A 1657 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.1659;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.71;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1690,192,0 chrIII 296948 . A G 1646 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=20.57;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1679,204,0 chrIII 297016 . G A 802 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.97;MQ0=0;QD=10.99;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:93:835,93,0 chrIII 297026 . G A 566 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=0;QD=7.65;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:69:599,69,0 chrIII 297027 . G A 597 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=0;QD=8.07;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:72:630,72,0 chrIII 297038 . C A 560 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=35.98;MQ0=0;QD=7.09;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:69:593,69,0 chrIII 297070 . G A 1380 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0386;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=14.53;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1413,162,0 chrIII 297325 . C T 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.453;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.5312;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-0.838;QD=18.57;ReadPosRankSum=1.360;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3491,386,0 chrIII 297334 . C T 3788.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=19.33;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3788,423,0 chrIII 298326 . G A 4171.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.6539;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.17;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4171,474,0 chrIII 298764 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0389;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.55;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3268,369,0 chrIII 298878 . C G 4305.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.6371;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.96;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4305,521,0 chrIII 299770 . G C 2010 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=0;QD=17.95;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2043,237,0 chrIII 299792 . G A 1941 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;QD=16.88;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1974,225,0 chrIII 299808 . C T 1923 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;QD=15.14;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1956,222,0 chrIII 299823 . T C 2082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=129;Dels=0.00;FS=3.472;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;MQRankSum=-1.437;QD=16.14;ReadPosRankSum=1.652;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2115,243,0 chrIII 299847 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=17.54;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2260,261,0 chrIII 299902 . A T 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=126;Dels=0.00;FS=3.081;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;MQRankSum=-1.481;QD=19.14;ReadPosRankSum=1.704;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2445,282,0 chrIII 300047 . G A 3750.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=20.16;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:3750,423,0 chrIII 300065 . A C 3525.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=19.37;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3525,408,0 chrIII 300103 . A G 2912 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=15.83;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:2945,359,0 chrIII 300132 . C A 2275 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;QD=13.70;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2308,276,0 chrIII 300139 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.97;MQ0=0;QD=14.78;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2354,276,0 chrIII 300151 . T C 1765 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;QD=12.79;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1798,221,0 chrIII 300168 . G T 1861 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=13.79;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1894,222,0 chrIII 300273 . A G 4184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=1.134;QD=21.35;ReadPosRankSum=2.387;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4184,486,0 chrIII 300310 . G A 4829.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=17.2159;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.46;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4829,549,0 chrIII 300677 . C A 2306 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.38;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2339,261,0 chrIII 300695 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.23;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2481,282,0 chrIII 300759 . G A 2628 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.27;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2661,297,0 chrIII 300792 . T C 2531 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.44;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2564,300,0 chrIII 300825 . G A 2682 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.98;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2715,309,0 chrIII 300866 . G A 2692 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.09;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2725,312,0 chrIII 300877 . A G 2890 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=20.21;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:2923,333,0 chrIII 301002 . C A 2622 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.00;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2655,291,0 chrIII 301079 . G A 3811.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.96;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3811,432,0 chrIII 301212 . G C 3027 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.5529;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.17;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3060,363,0 chrIII 301423 . C T 2997 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.26;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3030,342,0 chrIII 301448 . G A 2947 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.47;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2980,336,0 chrIII 301452 . A G 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.648;QD=19.44;ReadPosRankSum=1.638;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:2910,333,0 chrIII 301654 . G A 2758 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.72;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2791,315,0 chrIII 301727 . A G 2508 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=20.90;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2541,291,0 chrIII 301738 . A C 2304 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=18.58;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2337,282,0 chrIII 301748 . T C 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=-0.014;QD=17.72;ReadPosRankSum=1.704;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2248,267,0 chrIII 301769 . G A 2330 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=16.76;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2363,273,0 chrIII 301864 . C T 3141 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.22;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3174,360,0 chrIII 301887 . A C 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=144;Dels=0.00;FS=3.492;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.375;QD=18.85;ReadPosRankSum=1.708;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2747,318,0 chrIII 301917 . T C 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=130;Dels=0.00;FS=2.950;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.486;QD=20.09;ReadPosRankSum=2.335;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2645,318,0 chrIII 302062 . C T 3893.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.3841;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.59;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3893,441,0 chrIII 302096 . A G 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=184;Dels=0.00;FS=3.932;HaplotypeScore=9.7178;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=0.539;QD=21.22;ReadPosRankSum=1.694;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3904,447,0 chrIII 302150 . T A 4044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=187;Dels=0.00;FS=5.308;HaplotypeScore=13.4785;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.201;QD=21.63;ReadPosRankSum=2.527;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:4044,427,0 chrIII 302230 . G T 4703.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.17;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4703,519,0 chrIII 302465 . A G 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.728;QD=20.94;ReadPosRankSum=1.707;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2923,339,0 chrIII 302475 . T G 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=142;Dels=0.01;FS=9.420;HaplotypeScore=7.9394;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-0.532;QD=20.12;ReadPosRankSum=2.380;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2890,336,0 chrIII 302580 . C T 2722 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=19.72;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2755,312,0 chrIII 302586 . C T 2528 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=19.30;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2561,291,0 chrIII 302608 . C G 2253 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=19.76;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2286,264,0 chrIII 302630 . C G 1997 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=19.39;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2030,237,0 chrIII 302768 . T C 1882 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=3.089;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;MQRankSum=-1.114;QD=16.80;ReadPosRankSum=1.670;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1915,231,0 chrIII 302771 . C T 2010 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=17.63;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2043,237,0 chrIII 302772 . C A 1988 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=17.44;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2021,237,0 chrIII 302927 . G A 1772 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=21.10;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1805,207,0 chrIII 302944 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=20.69;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1957,225,0 chrIII 302979 . G A 1880 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=20.89;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1913,219,0 chrIII 302988 . G A 1921 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=22.60;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1954,222,0 chrIII 303080 . C A 1974 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.69;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2007,231,0 chrIII 303175 . G A 2130 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=37.55;MQ0=2;QD=22.42;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2163,243,0 chrIII 303216 . T C 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=3;MQRankSum=1.961;QD=21.56;ReadPosRankSum=2.931;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:3,102:105:99:2297,264,0 chrIII 303472 . G A 2387 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=1;QD=20.58;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2420,279,0 chrIII 303499 . C T 2103 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=1;QD=18.95;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2136,240,0 chrIII 303524 . T C 1654 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=1;QD=17.41;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1687,195,0 chrIII 303529 . G A 1707 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=1;QD=18.35;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1740,198,0 chrIII 303540 . A C 1659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.071;DP=92;Dels=0.00;FS=2.302;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;MQRankSum=1.589;QD=18.03;ReadPosRankSum=3.851;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:6,86:92:99:1692,159,0 chrIII 303560 . A G 1607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.134;DP=88;Dels=0.00;FS=2.314;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;MQRankSum=2.127;QD=18.26;ReadPosRankSum=0.935;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:6,82:88:99:1640,155,0 chrIII 303728 . G A 902 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;QD=22.55;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:935,108,0 chrIII 303749 . G A 289 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=0;QD=17.00;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:39:322,39,0 chrIII 303754 . A G 244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.583;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=0;MQRankSum=-2.079;QD=14.35;ReadPosRankSum=2.583;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:3,14:17:33:277,33,0 chrIII 303762 . C G 345 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=19.17;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:45:378,45,0 chrIII 303779 . C G 421 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=19.14;SB=-6.550e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:54:454,54,0 chrIII 303780 . C A 459 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=20.86;SB=-6.550e-03 GT:AD:DP:GQ:PL 1/1:0,21:22:54:492,54,0 chrIII 303784 . G A 564 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=18.19;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:66:597,66,0 chrIII 303795 . C T 656 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=17.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:78:689,78,0 chrIII 303821 . C T 1036 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=16.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1069,126,0 chrIII 303851 . G A 1482 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=20.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1515,171,0 chrIII 303853 . C T 1474 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=20.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1507,168,0 chrIII 303862 . A G 1361 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=18.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1394,159,0 chrIII 303884 . C T 1073 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.76;MQ0=0;QD=20.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1106,126,0 chrIII 303922 . G A 201.01 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.43;MQ0=0;QD=13.40;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:27:234,27,0 chrIII 303967 . G A 98.26 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:15:131,15,0 chrIII 303971 . A G 96.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.75;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:15:129,15,0 chrIII 303979 . G A 123.13 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.70;SB=-1.418e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:18:156,18,0 chrIII 303984 . A T 127.13 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.69;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:18:160,18,0 chrIII 303985 . A C 123.13 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=5.86;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,19:21:18:156,18,0 chrIII 304001 . G T 183.03 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.64;MQ0=1;QD=5.72;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,32:32:24:216,24,0 chrIII 304019 . T C 203.01 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.40;MQ0=2;QD=5.49;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,37:37:27:236,27,0 chrIII 304068 . T A 218.01 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=27.6891;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=2;QD=5.07;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,43:43:27:251,27,0 chrIII 304102 . A G 47.97 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.42;MQ0=0;QD=1.14;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,42:42:9:80,9,0 chrIII 304108 . A G 64.51 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.53;MQ0=0;QD=1.61;SB=-2.652e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:12:97,12,0 chrIII 304117 . T G 71.51 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.73;MQ0=0;QD=1.93;SB=-2.452e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:12:104,12,0 chrIII 304124 . G T 97.26 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.51;MQ0=0;QD=2.56;SB=-4.827e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:15:130,15,0 chrIII 304299 . C T 381 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=10.58;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:48:414,48,0 chrIII 304326 . G A 518 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.73;MQ0=0;QD=12.95;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:57:551,57,0 chrIII 304328 . G A 483 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.05;MQ0=0;QD=12.71;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:57:516,57,0 chrIII 304379 . T G 234 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.21;MQ0=0;QD=11.70;SB=-1.492e-02 GT:AD:DP:GQ:PL 1/1:0,19:20:30:267,30,0 chrIII 305687 . G A 46.97 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.33;MQ0=26;QD=1.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:9:79,9,0 chrIII 305737 . C T 62.51 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.37;MQ0=79;QD=0.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:12:95,12,0 chrIII 305778 . C T 1657 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=21.12;MQ0=59;QD=13.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:1690,192,0 chrIII 305821 . A C 2800 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.8077;MLEAC=2;MLEAF=1.00;MQ=29.39;MQ0=7;QD=22.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2833,333,0 chrIII 306125 . A T 2086 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=5;MQRankSum=-1.580;QD=12.64;ReadPosRankSum=1.667;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2119,237,0 chrIII 306130 . A G 1716 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.736;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=26.91;MQ0=5;MQRankSum=-3.715;QD=11.22;ReadPosRankSum=3.693;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:5,148:153:99:1749,204,0 chrIII 306132 . G A 1740 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.12;MQ0=5;QD=12.08;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:1773,201,0 chrIII 306149 . T G 1970 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=2;QD=13.97;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2003,234,0 chrIII 306150 . G A 1991 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=2;QD=14.12;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2024,231,0 chrIII 306171 . G T 2061 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=14.31;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2094,231,0 chrIII 306173 . T G 1926 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=13.37;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:1959,228,0 chrIII 306178 . G A 2102 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=13.47;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2135,240,0 chrIII 306181 . C G 2088 SnpCluster AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=12.89;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2121,249,0 chrIII 306199 . C T 1837 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.13;MQ0=2;QD=11.27;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,163:163:99:1870,216,0 chrIII 306202 . T A 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=164;Dels=0.00;FS=6.297;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=2;MQRankSum=-0.813;QD=10.40;ReadPosRankSum=1.711;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,163:164:99:1738,198,0 chrIII 306218 . C T 1997 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.49;MQ0=2;QD=11.68;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2030,228,0 chrIII 306239 . C T 1651 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=2;QD=11.16;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1684,195,0 chrIII 306260 . C T 1383 filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=4;QD=11.34;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1416,162,0 chrIII 306278 . G A 1233 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=2;QD=12.09;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1266,144,0 chrIII 306292 . G A 1149 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.67;MQ0=2;QD=13.52;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1182,135,0 chrIII 306309 . G T 625 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.54;MQ0=2;QD=11.36;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:75:658,75,0 chrIII 306337 . G C 400 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=2;QD=11.43;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:51:433,51,0 chrIII 306351 . G A 123.13 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=0;QD=7.70;SB=-1.051e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:18:156,18,0 chrIII 306356 . T C 200.01 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.05;MQ0=0;QD=9.09;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:233,27,0 chrIII 306392 . G T 1259 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.70;MQ0=1;QD=15.35;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1292,144,0 chrIII 306412 . C T 1780 filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3303;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=4;QD=14.59;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1813,204,0 chrIII 306426 . G A 639.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.610;DP=140;Dels=0.00;FS=0.667;HaplotypeScore=12.6800;MLEAC=1;MLEAF=0.500;MQ=35.88;MQ0=5;MQRankSum=-1.583;QD=4.56;ReadPosRankSum=1.221;SB=-3.220e+02 GT:AD:DP:GQ:PL 0/1:75,64:140:99:669,0,1010 chrIII 306483 . T C 2148 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=7;QD=16.91;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2181,249,0 chrIII 306507 . C G 2114 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=5;QD=20.13;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2147,240,0 chrIII 306538 . A T 2182 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=15.9196;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=3;QD=17.46;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2215,249,0 chrIII 306575 . C T 2796 filter AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=33.53;MQ0=9;QD=20.71;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2829,318,0 chrIII 306624 . C G 3579.01 filter AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=8;QD=19.88;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3579,420,0 chrIII 306731 . A G 3976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=181;Dels=0.00;FS=3.033;HaplotypeScore=5.7221;MLEAC=2;MLEAF=1.00;MQ=38.52;MQ0=0;MQRankSum=0.258;QD=21.97;ReadPosRankSum=2.310;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:2,174:181:99:3976,462,0 chrIII 306736 . T G 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=183;Dels=0.00;FS=3.031;HaplotypeScore=8.8769;MLEAC=2;MLEAF=1.00;MQ=37.91;MQ0=0;MQRankSum=0.522;QD=22.15;ReadPosRankSum=2.368;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:2,179:183:99:4054,462,0 chrIII 306811 . C G 1058.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.940;DP=168;Dels=0.00;FS=10.711;HaplotypeScore=8.8634;MLEAC=1;MLEAF=0.500;MQ=38.43;MQ0=0;MQRankSum=-0.500;QD=6.30;ReadPosRankSum=-0.155;SB=-4.500e+02 GT:AD:DP:GQ:PL 0/1:94,70:168:99:1088,0,1555 chrIII 306817 . G A 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.7522;MLEAC=2;MLEAF=1.00;MQ=38.94;MQ0=0;MQRankSum=1.091;QD=21.43;ReadPosRankSum=0.449;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3472,405,0 chrIII 306856 . G C 3333.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;QD=21.23;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3333,393,0 chrIII 306902 . A G 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.0889;MLEAC=2;MLEAF=1.00;MQ=39.10;MQ0=0;MQRankSum=-1.567;QD=16.98;ReadPosRankSum=2.412;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2257,261,0 chrIII 306920 . A G 1960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.384;DP=120;Dels=0.00;FS=2.430;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.12;MQ0=0;MQRankSum=-3.282;QD=16.33;ReadPosRankSum=3.384;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:4,116:120:99:1993,234,0 chrIII 306928 . C A 1543 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.07;MQ0=0;QD=14.84;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1576,183,0 chrIII 306967 . T A 1774 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=0;QD=19.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1807,204,0 chrIII 306972 . T C 1683 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=19.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1716,198,0 chrIII 306974 . C T 1732 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=20.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1765,192,0 chrIII 306978 . C T 1621 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;QD=18.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1654,186,0 chrIII 306992 . C T 1588 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.09;MQ0=0;QD=17.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1621,186,0 chrIII 307016 . G A 1730 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.819;DP=112;Dels=0.00;FS=49.214;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=25.39;MQ0=1;MQRankSum=2.954;QD=15.45;ReadPosRankSum=0.593;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,105:112:99:1763,201,0 chrIII 307019 . T C 1672 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.978;DP=114;Dels=0.00;FS=49.690;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.46;MQ0=1;MQRankSum=2.695;QD=14.67;ReadPosRankSum=-0.006;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,107:114:99:1705,198,0 chrIII 307029 . T C 1266 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.321;DP=104;Dels=0.00;FS=64.873;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=1;MQRankSum=3.159;QD=12.17;ReadPosRankSum=0.800;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:10,94:104:99:1299,153,0 chrIII 307039 . A T 1041 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=23.60;MQ0=1;QD=10.73;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1074,129,0 chrIII 307072 . C T 747 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=118;Dels=0.00;FS=82.440;HaplotypeScore=1.9336;MLEAC=2;MLEAF=1.00;MQ=20.62;MQ0=4;MQRankSum=2.471;QD=6.33;ReadPosRankSum=-0.745;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:23,95:118:71:780,71,0 chrIII 307084 . G A 563 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.126;DP=109;Dels=0.00;FS=84.818;HaplotypeScore=1.9258;MLEAC=2;MLEAF=1.00;MQ=20.13;MQ0=4;MQRankSum=2.028;QD=5.17;ReadPosRankSum=0.997;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:29,80:109:52:596,52,0 chrIII 307086 . T A 581 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.949;DP=109;Dels=0.00;FS=76.490;HaplotypeScore=1.9258;MLEAC=2;MLEAF=1.00;MQ=20.13;MQ0=4;MQRankSum=1.918;QD=5.33;ReadPosRankSum=1.058;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:27,82:109:51:614,51,0 chrIII 307114 . T A 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;DP=89;Dels=0.00;FS=37.534;HaplotypeScore=6.9729;MLEAC=1;MLEAF=0.500;MQ=16.43;MQ0=10;MQRankSum=-0.753;QD=0.21;ReadPosRankSum=2.702;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:47,42:89:49:49,0,131 chrIII 307138 . C T 761 filter AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.1589;MLEAC=2;MLEAF=1.00;MQ=18.20;MQ0=9;QD=5.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,135:135:93:794,93,0 chrIII 307223 . A G 173.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.888;DP=174;Dels=0.00;FS=2.465;HaplotypeScore=26.4465;MLEAC=1;MLEAF=0.500;MQ=18.64;MQ0=49;MQRankSum=-0.146;QD=0.99;ReadPosRankSum=0.071;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:128,45:174:99:203,0,541 chrIII 307310 . G A 124.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;DP=547;Dels=0.00;FS=23.393;HaplotypeScore=34.8558;MLEAC=1;MLEAF=0.500;MQ=19.16;MQ0=38;MQRankSum=4.683;QD=0.23;ReadPosRankSum=1.885;SB=-7.301e+01 GT:AD:DP:GQ:PL 0/1:489,57:547:99:154,0,3755 chrIII 307317 . T C 290.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.126;DP=606;Dels=0.00;FS=15.118;HaplotypeScore=49.2282;MLEAC=1;MLEAF=0.500;MQ=19.03;MQ0=41;MQRankSum=5.838;QD=0.48;ReadPosRankSum=0.496;SB=-1.400e+02 GT:AD:DP:GQ:PL 0/1:539,65:606:99:320,0,3964 chrIII 307368 . A G 2307 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.078;DP=397;Dels=0.00;FS=4.967;HaplotypeScore=12.8995;MLEAC=2;MLEAF=1.00;MQ=18.56;MQ0=28;MQRankSum=6.298;QD=5.81;ReadPosRankSum=0.431;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:49,348:397:99:2340,257,0 chrIII 307376 . A T 1615 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.721;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=5.0721;MLEAC=2;MLEAF=1.00;MQ=18.22;MQ0=21;MQRankSum=-0.871;QD=4.74;ReadPosRankSum=0.490;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:1,340:341:99:1648,195,0 chrIII 307413 . G A 785.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=57.7352;MLEAC=1;MLEAF=0.500;MQ=21.50;MQ0=20;MQRankSum=6.361;QD=3.83;ReadPosRankSum=1.173;SB=-3.350e+02 GT:AD:DP:GQ:PL 0/1:126,79:205:99:815,0,406 chrIII 307421 . G A 534.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;DP=209;Dels=0.00;FS=5.278;HaplotypeScore=189.0614;MLEAC=1;MLEAF=0.500;MQ=21.52;MQ0=12;MQRankSum=-6.451;QD=2.56;ReadPosRankSum=0.293;SB=-2.490e+02 GT:AD:DP:GQ:PL 0/1:73,136:209:99:564,0,891 chrIII 307422 . C A 195.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.739;DP=210;Dels=0.00;FS=25.449;HaplotypeScore=211.5729;MLEAC=1;MLEAF=0.500;MQ=21.48;MQ0=12;MQRankSum=-4.963;QD=0.93;ReadPosRankSum=-0.084;SB=-1.010e+02 GT:AD:DP:GQ:PL 0/1:111,83:210:99:225,0,1090 chrIII 307428 . C T 103.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.820;DP=238;Dels=0.00;FS=5.671;HaplotypeScore=226.2008;MLEAC=1;MLEAF=0.500;MQ=21.16;MQ0=13;MQRankSum=-1.720;QD=0.43;ReadPosRankSum=-1.763;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:173,64:238:99:133,0,1195 chrIII 307429 . T G 98.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.643;DP=239;Dels=0.00;FS=6.788;HaplotypeScore=243.1090;MLEAC=1;MLEAF=0.500;MQ=21.16;MQ0=13;MQRankSum=-2.439;QD=0.41;ReadPosRankSum=-1.333;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:175,64:239:99:128,0,1199 chrIII 307431 . C A 141.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.468;DP=249;Dels=0.00;FS=0.496;HaplotypeScore=238.0055;MLEAC=1;MLEAF=0.500;MQ=20.66;MQ0=12;MQRankSum=-2.238;QD=0.57;ReadPosRankSum=1.143;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:162,87:249:99:171,0,1085 chrIII 307432 . A G 297.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=219.6084;MLEAC=1;MLEAF=0.500;MQ=20.65;MQ0=12;MQRankSum=3.770;QD=1.18;ReadPosRankSum=4.745;SB=-7.701e+01 GT:AD:DP:GQ:PL 0/1:228,23:251:99:327,0,930 chrIII 307454 . T C 290.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.281;DP=306;Dels=0.00;FS=24.400;HaplotypeScore=63.7805;MLEAC=1;MLEAF=0.500;MQ=18.60;MQ0=23;MQRankSum=-0.893;QD=0.95;ReadPosRankSum=1.803;SB=-3.230e+02 GT:AD:DP:GQ:PL 0/1:158,148:306:99:320,0,1225 chrIII 307455 . T A 308.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.996;DP=307;Dels=0.00;FS=25.905;HaplotypeScore=116.0261;MLEAC=1;MLEAF=0.500;MQ=18.58;MQ0=23;MQRankSum=-1.211;QD=1.00;ReadPosRankSum=1.601;SB=-3.220e+02 GT:AD:DP:GQ:PL 0/1:159,148:307:99:338,0,1264 chrIII 307456 . C T 281.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;DP=307;Dels=0.00;FS=25.905;HaplotypeScore=116.8583;MLEAC=1;MLEAF=0.500;MQ=18.58;MQ0=23;MQRankSum=-0.992;QD=0.92;ReadPosRankSum=1.474;SB=-3.220e+02 GT:AD:DP:GQ:PL 0/1:159,148:307:99:311,0,1188 chrIII 307461 . C T 552.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.504;DP=347;Dels=0.00;FS=25.075;HaplotypeScore=115.3008;MLEAC=1;MLEAF=0.500;MQ=18.39;MQ0=28;MQRankSum=-1.035;QD=1.59;ReadPosRankSum=1.847;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:210,137:347:99:582,0,957 chrIII 307465 . C T 72.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;DP=359;Dels=0.00;FS=27.010;HaplotypeScore=111.8044;MLEAC=1;MLEAF=0.500;MQ=18.21;MQ0=29;MQRankSum=-3.599;QD=0.20;ReadPosRankSum=-0.363;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/1:243,116:359:99:102,0,1624 chrIII 307481 . T A 2434 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.741;DP=423;Dels=0.00;FS=179.866;HaplotypeScore=29.2880;MLEAC=2;MLEAF=1.00;MQ=18.03;MQ0=43;MQRankSum=5.202;QD=5.75;ReadPosRankSum=0.439;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:135,288:423:99:2467,145,0 chrIII 307516 . G A 962.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.268;DP=440;Dels=0.00;FS=98.842;HaplotypeScore=42.1361;MLEAC=1;MLEAF=0.500;MQ=16.33;MQ0=63;MQRankSum=-3.888;QD=2.19;ReadPosRankSum=-1.061;SB=-1.990e+02 GT:AD:DP:GQ:PL 0/1:202,238:440:99:992,0,646 chrIII 307531 . A G 972.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.294;DP=426;Dels=0.00;FS=16.001;HaplotypeScore=7.1416;MLEAC=1;MLEAF=0.500;MQ=16.34;MQ0=60;MQRankSum=1.712;QD=2.28;ReadPosRankSum=-0.361;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:180,246:426:99:1002,0,607 chrIII 307547 . A G 790.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.244;DP=347;Dels=0.00;FS=31.495;HaplotypeScore=10.6703;MLEAC=1;MLEAF=0.500;MQ=15.17;MQ0=54;MQRankSum=-4.204;QD=2.28;ReadPosRankSum=2.353;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,276:347:99:820,0,385 chrIII 307548 . C T 780.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.236;DP=343;Dels=0.00;FS=20.031;HaplotypeScore=9.8816;MLEAC=1;MLEAF=0.500;MQ=15.15;MQ0=54;MQRankSum=-4.777;QD=2.27;ReadPosRankSum=1.515;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,276:343:99:810,0,381 chrIII 307560 . G T 259.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.758;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=13.7316;MLEAC=1;MLEAF=0.500;MQ=15.11;MQ0=48;MQRankSum=5.221;QD=0.80;ReadPosRankSum=1.833;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:268,57:325:99:289,0,812 chrIII 307582 . A G 67.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.492;DP=230;Dels=0.00;FS=4.202;HaplotypeScore=69.6627;MLEAC=1;MLEAF=0.500;MQ=14.74;MQ0=28;MQRankSum=2.944;QD=0.29;ReadPosRankSum=1.387;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:131,98:230:97:97,0,421 chrIII 307583 . G A 32.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.560;DP=220;Dels=0.00;FS=8.935;HaplotypeScore=69.1003;MLEAC=1;MLEAF=0.500;MQ=15.02;MQ0=27;MQRankSum=2.018;QD=0.15;ReadPosRankSum=0.407;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:124,86:220:62:62,0,409 chrIII 307587 . C T 203.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.255;DP=209;Dels=0.00;FS=2.305;HaplotypeScore=114.6264;MLEAC=1;MLEAF=0.500;MQ=14.85;MQ0=21;MQRankSum=4.095;QD=0.97;ReadPosRankSum=1.083;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:173,35:209:99:233,0,251 chrIII 307594 . G T 139.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.684;DP=189;Dels=0.00;FS=2.323;HaplotypeScore=93.1876;MLEAC=1;MLEAF=0.500;MQ=14.98;MQ0=19;MQRankSum=3.268;QD=0.74;ReadPosRankSum=1.038;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:155,33:189:99:169,0,335 chrIII 307595 . A T 549 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.597;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=92.3989;MLEAC=2;MLEAF=1.00;MQ=15.07;MQ0=18;MQRankSum=3.896;QD=3.00;ReadPosRankSum=2.923;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:30,153:183:51:582,51,0 chrIII 307604 . G A 38.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.912;DP=151;Dels=0.00;FS=8.072;HaplotypeScore=56.5869;MLEAC=1;MLEAF=0.500;MQ=15.63;MQ0=19;MQRankSum=2.944;QD=0.25;ReadPosRankSum=-1.561;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,55:151:68:68,0,422 chrIII 307608 . G C 183.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.064;DP=152;Dels=0.00;FS=6.624;HaplotypeScore=14.7430;MLEAC=1;MLEAF=0.500;MQ=15.85;MQ0=14;MQRankSum=1.449;QD=1.20;ReadPosRankSum=-3.405;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,67:152:99:213,0,447 chrIII 307612 . G A 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.510;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.1657;MLEAC=1;MLEAF=0.500;MQ=15.51;MQ0=14;MQRankSum=4.167;QD=0.30;ReadPosRankSum=1.776;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,10:162:79:79,0,510 chrIII 307628 . A G 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.045;DP=183;Dels=0.00;FS=3.223;HaplotypeScore=42.1665;MLEAC=1;MLEAF=0.500;MQ=13.83;MQ0=10;MQRankSum=2.493;QD=0.20;ReadPosRankSum=3.051;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:157,26:183:66:66,0,579 chrIII 307630 . G A 118.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.667;DP=182;Dels=0.00;FS=8.707;HaplotypeScore=19.6630;MLEAC=1;MLEAF=0.500;MQ=13.82;MQ0=11;MQRankSum=3.514;QD=0.65;ReadPosRankSum=-0.672;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:160,22:182:99:148,0,502 chrIII 307632 . T C 42.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.950;DP=179;Dels=0.00;FS=8.733;HaplotypeScore=41.7215;MLEAC=1;MLEAF=0.500;MQ=13.78;MQ0=11;MQRankSum=2.844;QD=0.23;ReadPosRankSum=2.343;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:151,28:179:72:72,0,526 chrIII 307641 . T A 289.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;DP=161;Dels=0.01;FS=1.186;HaplotypeScore=27.0706;MLEAC=1;MLEAF=0.500;MQ=13.52;MQ0=12;MQRankSum=-5.032;QD=1.80;ReadPosRankSum=-1.622;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,117:160:99:319,0,278 chrIII 307642 . G A 81.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;DP=161;Dels=0.01;FS=2.225;HaplotypeScore=27.8593;MLEAC=1;MLEAF=0.500;MQ=13.52;MQ0=12;MQRankSum=4.594;QD=0.50;ReadPosRankSum=1.825;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:150,10:160:99:111,0,489 chrIII 307653 . G A 455.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.631;DP=155;Dels=0.00;FS=9.048;HaplotypeScore=2.7789;MLEAC=1;MLEAF=0.500;MQ=13.42;MQ0=15;MQRankSum=-3.199;QD=2.94;ReadPosRankSum=1.931;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,125:155:78:485,0,78 chrIII 307675 . T A 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;DP=160;Dels=0.00;FS=9.013;HaplotypeScore=2.1557;MLEAC=1;MLEAF=0.500;MQ=12.88;MQ0=23;MQRankSum=3.310;QD=0.22;ReadPosRankSum=-1.113;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:134,26:160:65:65,0,442 chrIII 314061 . A G 37.97 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.20;MQ0=0;QD=1.73;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:70,9,0 chrIII 314078 . T A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=7.4420;MLEAC=2;MLEAF=1.00;MQ=16.91;MQ0=0;QD=0.62;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,29:29:6:49,6,0 chrIII 314240 . C T 97.13 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.99;MQ0=2;QD=9.71;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:18:130,18,0 chrIII 314252 . T C 206 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.34;MQ0=2;QD=8.24;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:30:239,30,0 chrIII 314282 . G A 201 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.01;MQ0=6;QD=4.90;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,41:41:30:234,30,0 chrIII 314321 . A T 208 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=15.01;MQ0=6;QD=5.07;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,41:41:30:241,30,0 chrIII 315796 . G A 78.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.409;DP=30;Dels=0.00;FS=1.987;HaplotypeScore=13.1917;MLEAC=1;MLEAF=0.500;MQ=17.92;MQ0=0;MQRankSum=1.812;QD=2.60;ReadPosRankSum=1.491;SB=-7.089e+01 GT:AD:DP:GQ:PL 0/1:19,10:30:22:108,0,22 chrIII 315812 . A G 56.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297;DP=60;Dels=0.00;FS=71.408;HaplotypeScore=37.7202;MLEAC=1;MLEAF=0.500;MQ=16.88;MQ0=6;MQRankSum=2.928;QD=0.93;ReadPosRankSum=-3.150;SB=-6.433e-03 GT:AD:DP:GQ:PL 0/1:47,10:60:86:86,0,95 chrIII 315815 . G A 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;DP=72;Dels=0.00;FS=28.358;HaplotypeScore=36.4174;MLEAC=1;MLEAF=0.500;MQ=17.40;MQ0=7;MQRankSum=2.889;QD=0.44;ReadPosRankSum=-3.795;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,12:72:62:62,0,178 chrIII 315841 . A G 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.843;DP=190;Dels=0.00;FS=20.318;HaplotypeScore=45.8462;MLEAC=1;MLEAF=0.500;MQ=13.94;MQ0=7;MQRankSum=2.597;QD=0.16;ReadPosRankSum=3.850;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:156,32:190:61:61,0,340 chrIII 315898 . C T 297.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.852;DP=156;Dels=0.00;FS=32.339;HaplotypeScore=17.7042;MLEAC=2;MLEAF=1.00;MQ=13.14;MQ0=5;MQRankSum=-5.509;QD=1.90;ReadPosRankSum=1.061;SB=-1.291e+02 GT:AD:DP:GQ:PL 1/1:41,115:156:18:330,18,0 chrIII 315909 . A T 124.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.791;DP=117;Dels=0.00;FS=16.106;HaplotypeScore=13.5767;MLEAC=2;MLEAF=1.00;MQ=11.55;MQ0=0;MQRankSum=-3.504;QD=1.06;ReadPosRankSum=1.711;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:5,93:117:18:157,18,0 chrIII 315951 . C G 43.97 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=15.13;MQ0=5;QD=2.44;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,13:18:9:76,9,0 chrIII 315952 . C T 44.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.369;DP=24;Dels=0.00;FS=5.315;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=15.84;MQ0=7;MQRankSum=2.793;QD=1.87;ReadPosRankSum=0.158;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:9,15:24:9:77,9,0 chrIII 315990 . G A 506.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.953;DP=194;Dels=0.00;FS=5.668;HaplotypeScore=61.9377;MLEAC=1;MLEAF=0.500;MQ=17.37;MQ0=29;MQRankSum=2.951;QD=2.61;ReadPosRankSum=0.698;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:73,111:194:99:536,0,344 chrIII 315995 . C A 286.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.871;DP=232;Dels=0.00;FS=30.531;HaplotypeScore=128.3582;MLEAC=1;MLEAF=0.500;MQ=18.01;MQ0=31;MQRankSum=2.424;QD=1.23;ReadPosRankSum=5.318;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:171,52:232:99:316,0,885 chrIII 316002 . G T 89.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.217;DP=323;Dels=0.01;FS=2.935;HaplotypeScore=98.3867;MLEAC=1;MLEAF=0.500;MQ=17.98;MQ0=32;MQRankSum=0.742;QD=0.28;ReadPosRankSum=2.889;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:275,46:321:99:119,0,1562 chrIII 316009 . G T 410.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.793;DP=365;Dels=0.00;FS=66.585;HaplotypeScore=84.2749;MLEAC=1;MLEAF=0.500;MQ=18.37;MQ0=35;MQRankSum=5.173;QD=1.12;ReadPosRankSum=0.439;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:278,87:365:99:440,0,1565 chrIII 316022 . G A 117.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.919;DP=457;Dels=0.00;FS=47.632;HaplotypeScore=17.3504;MLEAC=1;MLEAF=0.500;MQ=17.60;MQ0=38;MQRankSum=-3.865;QD=0.26;ReadPosRankSum=7.207;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/1:386,71:457:99:147,0,2297 chrIII 316056 . G A 1486.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;DP=424;Dels=0.00;FS=23.723;HaplotypeScore=195.7434;MLEAC=1;MLEAF=0.500;MQ=16.80;MQ0=25;MQRankSum=-3.790;QD=3.50;ReadPosRankSum=5.888;SB=-1.400e+02 GT:AD:DP:GQ:PL 0/1:58,366:424:99:1516,0,403 chrIII 316063 . T C 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.159;DP=398;Dels=0.00;FS=92.816;HaplotypeScore=211.1912;MLEAC=1;MLEAF=0.500;MQ=16.91;MQ0=25;MQRankSum=-6.717;QD=0.09;ReadPosRankSum=2.875;SB=-3.007e+00 GT:AD:DP:GQ:PL 0/1:261,137:398:67:67,0,1477 chrIII 316089 . C A 255.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;DP=266;Dels=0.00;FS=126.210;HaplotypeScore=38.0540;MLEAC=1;MLEAF=0.500;MQ=16.25;MQ0=9;MQRankSum=4.127;QD=0.96;ReadPosRankSum=-7.468;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:193,73:266:99:285,0,760 chrIII 316095 . T G 820 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=20.9083;MLEAC=2;MLEAF=1.00;MQ=16.21;MQ0=7;MQRankSum=0.936;QD=4.88;ReadPosRankSum=-1.366;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:1,167:168:99:853,105,0 chrIII 316100 . G A 102.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.497;DP=145;Dels=0.00;FS=130.378;HaplotypeScore=16.8726;MLEAC=1;MLEAF=0.500;MQ=14.81;MQ0=5;MQRankSum=3.200;QD=0.70;ReadPosRankSum=-3.303;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:116,28:145:99:132,0,203 chrIII 316117 . C T 75.61 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=41;Dels=0.00;FS=36.228;HaplotypeScore=2.9726;MLEAC=1;MLEAF=0.500;MQ=13.05;MQ0=2;MQRankSum=3.012;QD=1.84;ReadPosRankSum=-1.582;SB=-1.610e+01 GT:AD:DP:GQ:PL 1/1:31,9:41:12:108,12,0 chrIII 316151 . G T 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.327;DP=36;Dels=0.00;FS=27.031;HaplotypeScore=23.3046;MLEAC=1;MLEAF=0.500;MQ=22.49;MQ0=0;MQRankSum=-1.889;QD=0.75;ReadPosRankSum=-1.545;SB=-6.476e-03 GT:AD:DP:GQ:PL 0/1:25,11:36:57:57,0,88 chrIII 316158 . C A 69.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=17.8742;MLEAC=1;MLEAF=0.500;MQ=22.72;MQ0=0;MQRankSum=0.103;QD=1.92;ReadPosRankSum=-0.790;SB=-9.401e+01 GT:AD:DP:GQ:PL 0/1:11,25:36:27:99,0,27 chrIII 316159 . C T 87.94 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=17.8742;MLEAC=1;MLEAF=0.500;MQ=22.72;MQ0=0;QD=2.44;SB=-9.094e+01 GT:AD:DP:GQ:PL 1/1:0,25:36:15:119,15,0 chrIII 316167 . T C 67.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=64.1673;MLEAC=1;MLEAF=0.500;MQ=21.32;MQ0=1;MQRankSum=-0.736;QD=1.05;ReadPosRankSum=-2.841;SB=-2.510e+02 GT:AD:DP:GQ:PL 0/1:17,47:64:65:97,0,65 chrIII 316174 . A G 504.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.273;DP=133;Dels=0.00;FS=17.549;HaplotypeScore=105.9488;MLEAC=1;MLEAF=0.500;MQ=19.58;MQ0=4;MQRankSum=1.029;QD=3.79;ReadPosRankSum=-4.751;SB=-3.130e+02 GT:AD:DP:GQ:PL 0/1:28,75:133:49:534,0,49 chrIII 316182 . A G 1261.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.629;DP=217;Dels=0.00;FS=29.405;HaplotypeScore=133.8405;MLEAC=1;MLEAF=0.500;MQ=20.63;MQ0=8;MQRankSum=-1.308;QD=5.81;ReadPosRankSum=-7.068;SB=-1.182e+02 GT:AD:DP:GQ:PL 0/1:46,164:217:10:1291,0,10 chrIII 316221 . G A 2787.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.368;DP=360;Dels=0.00;FS=22.665;HaplotypeScore=74.8955;MLEAC=1;MLEAF=0.500;MQ=21.54;MQ0=19;MQRankSum=0.386;QD=7.74;ReadPosRankSum=5.913;SB=-9.560e+02 GT:AD:DP:GQ:PL 0/1:94,266:360:50:2817,0,50 chrIII 316278 . C T 498.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;DP=101;Dels=0.01;FS=15.427;HaplotypeScore=33.3452;MLEAC=1;MLEAF=0.500;MQ=20.98;MQ0=4;MQRankSum=-0.027;QD=4.93;ReadPosRankSum=-1.146;SB=-2.660e+02 GT:AD:DP:GQ:PL 0/1:25,69:100:83:528,0,83 chrIII 316279 . A G 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;DP=91;Dels=0.01;FS=2.577;HaplotypeScore=28.1999;MLEAC=1;MLEAF=0.500;MQ=20.09;MQ0=4;MQRankSum=2.130;QD=0.38;ReadPosRankSum=1.016;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:81,9:90:65:65,0,453 chrIII 316288 . G C 294.76 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.029;DP=43;Dels=0.00;FS=11.139;HaplotypeScore=20.7870;MLEAC=2;MLEAF=1.00;MQ=20.20;MQ0=3;MQRankSum=-0.659;QD=6.85;ReadPosRankSum=1.607;SB=-1.773e+00 GT:AD:DP:GQ:PL 1/1:3,39:43:6:326,6,0 chrIII 316290 . C G 266.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=41;Dels=0.00;FS=12.788;HaplotypeScore=3.9132;MLEAC=2;MLEAF=1.00;MQ=20.01;MQ0=3;MQRankSum=-0.425;QD=6.49;ReadPosRankSum=0.883;SB=-3.019e+00 GT:AD:DP:GQ:PL 1/1:2,39:41:3:296,3,0 chrIII 316295 . T G 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;DP=40;Dels=0.00;FS=12.464;HaplotypeScore=22.9902;MLEAC=1;MLEAF=0.500;MQ=20.11;MQ0=2;MQRankSum=-1.916;QD=0.48;ReadPosRankSum=0.966;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,17:40:49:49,0,218 chrIII 316313 . T C 47.18 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;DP=25;Dels=0.00;FS=3.497;HaplotypeScore=49.2471;MLEAC=1;MLEAF=0.500;MQ=22.72;MQ0=1;MQRankSum=-1.299;QD=1.89;ReadPosRankSum=1.184;SB=-5.918e+01 GT:AD:DP:GQ:PL 0/1:13,12:25:11:77,0,11 chrIII 316317 . G A 149.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.705;DP=30;Dels=0.00;FS=21.093;HaplotypeScore=46.3001;MLEAC=2;MLEAF=1.00;MQ=25.58;MQ0=0;MQRankSum=-0.083;QD=4.98;ReadPosRankSum=-2.862;SB=-6.540e+00 GT:AD:DP:GQ:PL 1/1:15,15:30:4:180,4,0 chrIII 316326 . G A 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;DP=36;Dels=0.00;FS=20.851;HaplotypeScore=13.6657;MLEAC=1;MLEAF=0.500;MQ=26.27;MQ0=2;MQRankSum=-0.592;QD=0.37;ReadPosRankSum=2.807;SB=-3.600e+01 GT:AD:DP:GQ:PL 0/1:24,11:36:43:43,0,357 chrIII 316344 . T C 419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.445;DP=40;Dels=0.00;FS=20.230;HaplotypeScore=5.7777;MLEAC=2;MLEAF=1.00;MQ=25.97;MQ0=3;MQRankSum=1.111;QD=10.48;ReadPosRankSum=2.924;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:11,29:40:31:452,31,0 chrIII 316365 . G C 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.033;DP=52;Dels=0.00;FS=1.298;HaplotypeScore=23.1813;MLEAC=1;MLEAF=0.500;MQ=26.32;MQ0=2;MQRankSum=0.329;QD=0.42;ReadPosRankSum=-2.487;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:39,13:52:52:52,0,402 chrIII 316366 . A G 552 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=42.5028;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=1;QD=11.50;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:69:585,69,0 chrIII 316370 . G A 584 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=81.2637;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=1;QD=10.81;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:69:617,69,0 chrIII 316387 . T A 262.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.731;DP=88;Dels=0.00;FS=32.689;HaplotypeScore=76.2567;MLEAC=1;MLEAF=0.500;MQ=27.40;MQ0=2;MQRankSum=1.128;QD=2.98;ReadPosRankSum=-1.639;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:36,44:88:99:292,0,368 chrIII 316396 . A G 225.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;DP=96;Dels=0.00;FS=46.613;HaplotypeScore=45.6082;MLEAC=1;MLEAF=0.500;MQ=26.94;MQ0=4;MQRankSum=1.174;QD=2.34;ReadPosRankSum=3.674;SB=-9.201e+01 GT:AD:DP:GQ:PL 0/1:51,44:96:99:255,0,491 chrIII 316428 . G A 785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.450;DP=99;Dels=0.00;FS=4.712;HaplotypeScore=19.2057;MLEAC=2;MLEAF=1.00;MQ=26.56;MQ0=3;MQRankSum=3.106;QD=7.93;ReadPosRankSum=2.370;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:11,88:99:93:818,93,0 chrIII 316433 . G A 792 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.4634;MLEAC=2;MLEAF=1.00;MQ=26.54;MQ0=3;QD=8.00;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,95:99:93:825,93,0 chrIII 316450 . G T 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.613;DP=90;Dels=0.00;FS=12.085;HaplotypeScore=45.2571;MLEAC=1;MLEAF=0.500;MQ=26.91;MQ0=1;MQRankSum=2.182;QD=0.51;ReadPosRankSum=-1.558;SB=-6.523e-03 GT:AD:DP:GQ:PL 0/1:20,10:90:58:76,0,58 chrIII 316472 . G A 569 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.560;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=20.2924;MLEAC=2;MLEAF=1.00;MQ=26.13;MQ0=1;MQRankSum=1.039;QD=8.62;ReadPosRankSum=1.039;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:72:602,72,0 chrIII 316476 . T G 256.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;DP=57;Dels=0.00;FS=4.550;HaplotypeScore=22.2937;MLEAC=1;MLEAF=0.500;MQ=26.02;MQ0=1;MQRankSum=3.465;QD=4.49;ReadPosRankSum=4.689;SB=-3.570e+02 GT:AD:DP:GQ:PL 0/1:16,38:57:31:286,0,31 chrIII 316477 . G A 197.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;DP=56;Dels=0.00;FS=14.420;HaplotypeScore=24.2267;MLEAC=1;MLEAF=0.500;MQ=26.18;MQ0=1;MQRankSum=1.776;QD=3.52;ReadPosRankSum=3.332;SB=-3.960e+02 GT:AD:DP:GQ:PL 0/1:11,42:56:39:227,0,39 chrIII 316491 . T G 146.03 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;DP=33;Dels=0.00;FS=11.716;HaplotypeScore=14.7528;MLEAC=1;MLEAF=0.500;MQ=27.26;MQ0=0;MQRankSum=-1.211;QD=4.43;ReadPosRankSum=-0.991;SB=-1.760e+02 GT:AD:DP:GQ:PL 0/1:7,26:33:20:176,0,20 chrIV 186 . A C 95.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.561;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=18.2987;MLEAC=2;MLEAF=1.00;MQ=25.50;MQ0=0;MQRankSum=0.173;QD=3.66;ReadPosRankSum=-2.948;SB=2.74 GT:AD:DP:GQ:PL 1/1:7,19:26:15:128,15,0 chrIV 200 . C T 187.29 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.329;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=27.9611;MLEAC=1;MLEAF=0.500;MQ=24.95;MQ0=0;MQRankSum=-0.089;QD=4.16;ReadPosRankSum=0.089;SB=14.70 GT:AD:DP:GQ:PL 1/1:2,40:45:24:220,24,0 chrIV 201 . A C 193.76 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.332;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=26.0194;MLEAC=2;MLEAF=1.00;MQ=25.05;MQ0=0;MQRankSum=1.036;QD=4.21;ReadPosRankSum=0.872;SB=1.24 GT:AD:DP:GQ:PL 1/1:8,33:46:6:225,6,0 chrIV 205 . C T 225 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=57.6633;MLEAC=2;MLEAF=1.00;MQ=25.23;MQ0=0;MQRankSum=0.335;QD=4.69;ReadPosRankSum=2.193;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:2,46:48:30:258,30,0 chrIV 244 . C T 346 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=38.7147;MLEAC=2;MLEAF=1.00;MQ=24.45;MQ0=2;QD=5.24;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,62:66:42:379,42,0 chrIV 249 . C T 255.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.906;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=67.2240;MLEAC=1;MLEAF=0.500;MQ=24.39;MQ0=2;MQRankSum=0.209;QD=4.05;ReadPosRankSum=1.181;SB=-6.547e-03 GT:AD:DP:GQ:PL 0/1:15,48:63:49:285,0,49 chrIV 251 . C T 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.190;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=68.2073;MLEAC=1;MLEAF=0.500;MQ=24.31;MQ0=2;MQRankSum=1.477;QD=0.31;ReadPosRankSum=-0.393;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,14:62:49:49,0,271 chrIV 280 . T C 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.741;DP=51;Dels=0.00;FS=5.730;HaplotypeScore=26.2640;MLEAC=1;MLEAF=0.500;MQ=23.53;MQ0=2;MQRankSum=-1.307;QD=0.73;ReadPosRankSum=0.506;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,21:51:67:67,0,196 chrIV 291 . C T 103.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;DP=38;Dels=0.00;FS=6.365;HaplotypeScore=31.4652;MLEAC=1;MLEAF=0.500;MQ=23.19;MQ0=0;MQRankSum=0.634;QD=2.71;ReadPosRankSum=0.539;SB=-6.501e+01 GT:AD:DP:GQ:PL 0/1:19,19:38:46:133,0,46 chrIV 294 . T C 160.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=28.4909;MLEAC=2;MLEAF=1.00;MQ=22.70;MQ0=1;MQRankSum=-1.358;QD=4.22;ReadPosRankSum=-0.515;SB=-6.855e+01 GT:AD:DP:GQ:PL 1/1:2,36:38:2:190,2,0 chrIV 296 . A C 114.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;DP=41;Dels=0.00;FS=9.398;HaplotypeScore=28.4909;MLEAC=1;MLEAF=0.500;MQ=22.32;MQ0=3;MQRankSum=0.204;QD=2.78;ReadPosRankSum=1.139;SB=-6.501e+01 GT:AD:DP:GQ:PL 0/1:19,21:41:25:144,0,25 chrIV 329 . A G 109.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.94;MQ0=7;MQRankSum=0.868;QD=4.74;ReadPosRankSum=1.519;SB=-6.463e+01 GT:AD:DP:GQ:PL 1/1:8,15:23:18:142,18,0 chrIV 347 . T C 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.762;DP=16;Dels=0.00;FS=3.010;HaplotypeScore=3.0748;MLEAC=2;MLEAF=1.00;MQ=12.82;MQ0=7;MQRankSum=0.067;QD=2.06;ReadPosRankSum=0.762;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:9,7:16:9:65,9,0 chrIV 1669 . A G 39.97 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.48;MQ0=12;QD=0.63;SB=-2.221e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:9:72,9,0 chrIV 1939 . C T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.67;MQ0=0;QD=1.69;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:48,6,0 chrIV 1963 . A G 64.51 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.12;MQ0=1;QD=2.80;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:12:97,12,0 chrIV 1970 . C G 64.51 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.12;MQ0=1;QD=2.80;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:12:97,12,0 chrIV 1997 . T G 60.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=24.81;MQ0=1;MQRankSum=-1.704;QD=1.95;ReadPosRankSum=2.286;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:3,28:31:12:93,12,0 chrIV 2008 . T G 117.13 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.33;MQ0=1;QD=3.35;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:18:150,18,0 chrIV 2009 . A G 117.13 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.33;MQ0=1;QD=3.35;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:1,34:35:18:150,18,0 chrIV 2035 . G T 372 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=6.41;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:45:405,45,0 chrIV 2045 . C T 452 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.07;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:54:485,54,0 chrIV 2046 . T G 434 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.619;QD=7.75;ReadPosRankSum=1.670;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:1,55:56:54:467,54,0 chrIV 2055 . T C 432 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=4;QD=6.97;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:4,58:62:54:465,54,0 chrIV 2060 . G C 456 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=5;QD=6.91;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:54:489,54,0 chrIV 2066 . G T 518 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=5;QD=7.73;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:5,62:67:60:551,60,0 chrIV 2072 . T C 482 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=5;MQRankSum=1.191;QD=6.99;ReadPosRankSum=1.678;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:6,63:69:57:515,57,0 chrIV 2087 . A G 559 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=5;QD=7.55;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:5,69:74:69:592,69,0 chrIV 2112 . T C 328 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.17;MQ0=5;MQRankSum=-1.732;QD=4.75;ReadPosRankSum=1.624;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:1,68:69:42:361,42,0 chrIV 2135 . G A 334 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=22.02;MQ0=14;QD=4.34;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:45:367,45,0 chrIV 2151 . C T 357 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.63;MQ0=10;QD=4.46;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:48:390,48,0 chrIV 2152 . T G 347 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.77;MQ0=9;QD=4.39;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:48:380,48,0 chrIV 2156 . C A 358 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.02;MQ0=9;QD=4.07;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:48:391,48,0 chrIV 2228 . A T 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=111;Dels=0.00;FS=6.975;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=0;MQRankSum=0.477;QD=17.19;ReadPosRankSum=2.405;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:1941,219,0 chrIV 2230 . T C 2030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.257;DP=115;Dels=0.00;FS=8.627;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=39.93;MQ0=0;MQRankSum=-1.178;QD=17.65;ReadPosRankSum=3.380;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:4,110:115:99:2063,234,0 chrIV 2306 . A G 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=158;Dels=0.00;FS=7.304;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=34.33;MQ0=0;MQRankSum=0.524;QD=21.02;ReadPosRankSum=2.387;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3321,378,0 chrIV 2532 . C T 2429 filter AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=36;QD=14.81;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,161:164:99:2462,270,0 chrIV 2573 . G C 2788 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=1;QD=19.10;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2821,324,0 chrIV 2589 . G A 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=4.022;HaplotypeScore=4.3525;MLEAC=2;MLEAF=1.00;MQ=42.22;MQ0=0;MQRankSum=-0.202;QD=19.48;ReadPosRankSum=1.350;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3053,342,0 chrIV 2618 . T C 2314 filter AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.49;MQ0=10;QD=15.96;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,140:145:99:2347,279,0 chrIV 2621 . C T 2361 filter AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.69;MQ0=11;QD=16.99;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2394,264,0 chrIV 2685 . T C 244 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=15.50;MQ0=46;QD=3.34;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,72:73:33:277,33,0 chrIV 2778 . A G 1067 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=23;QD=10.26;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1100,129,0 chrIV 2854 . A G 364 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.2434;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=11;QD=8.67;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:48:397,48,0 chrIV 2871 . T C 59.51 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.04;MQ0=11;QD=3.13;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:12:92,12,0 chrIV 2881 . G A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.80;MQ0=10;QD=1.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:6:49,6,0 chrIV 12497 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.26;MQ0=2;QD=5.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:55,6,0 chrIV 16257 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=12.46;MQ0=26;MQRankSum=-0.924;QD=0.35;ReadPosRankSum=1.617;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,51:56:6:51,6,0 chrIV 16314 . T G 145.06 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=12.09;MQ0=42;QD=1.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:21:178,21,0 chrIV 16362 . A G 61.51 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.29;MQ0=88;QD=0.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,108:108:12:94,12,0 chrIV 16554 . T C 35.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=72;Dels=0.00;FS=10.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=10.69;MQ0=61;MQRankSum=-0.406;QD=0.50;ReadPosRankSum=1.537;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,64:72:9:68,9,0 chrIV 16794 . T C 28.77 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=6;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.16;MQ0=2;MQRankSum=0.727;QD=4.79;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,5:6:6:60,6,0 chrIV 16977 . T C 326 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=5;MQRankSum=-1.239;QD=12.54;ReadPosRankSum=1.569;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:1,25:26:42:359,42,0 chrIV 17067 . T C 711 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=8.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:84:744,84,0 chrIV 17068 . C T 714 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=8.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:84:747,84,0 chrIV 17107 . C T 123.13 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=2.74;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,45:45:18:156,18,0 chrIV 17151 . C T 253 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=2;QD=8.43;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,30:30:33:286,33,0 chrIV 17251 . T A 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.264;DP=168;Dels=0.00;FS=14.709;HaplotypeScore=4.1441;MLEAC=1;MLEAF=0.500;MQ=38.12;MQ0=6;MQRankSum=-2.557;QD=0.21;ReadPosRankSum=-1.720;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:140,28:168:65:65,0,2512 chrIV 17352 . A G 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=104;Dels=0.00;FS=4.901;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=1.426;QD=20.63;ReadPosRankSum=1.698;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2179,249,0 chrIV 17374 . T C 2526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=116;Dels=0.00;FS=2.426;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=-1.200;QD=21.78;ReadPosRankSum=2.870;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2559,285,0 chrIV 17411 . G A 2891 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=19.80;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2924,336,0 chrIV 17421 . A G 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=4.865;HaplotypeScore=7.6892;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;MQRankSum=0.086;QD=21.41;ReadPosRankSum=1.708;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3052,348,0 chrIV 17461 . T C 2899 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;QD=21.01;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2932,333,0 chrIV 17477 . G A 2668 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=20.21;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2701,294,0 chrIV 17710 . T C 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=164;Dels=0.00;FS=2.978;HaplotypeScore=8.2062;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;MQRankSum=0.324;QD=19.67;ReadPosRankSum=2.404;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3258,369,0 chrIV 17850 . T C 4614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=1;MQRankSum=0.817;QD=19.89;ReadPosRankSum=1.717;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:4614,522,0 chrIV 17898 . C T 2065 SnpCluster AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.1622;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=0;QD=10.93;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:2098,234,0 chrIV 17906 . T C 1121 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.97;MQ0=0;QD=9.83;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:1154,132,0 chrIV 17907 . A G 1058 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=9.45;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1091,129,0 chrIV 17909 . A G 972 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=0;QD=8.76;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1005,117,0 chrIV 17910 . A G 992 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=0;QD=8.94;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1025,120,0 chrIV 17911 . G C 991 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=0;QD=8.93;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1024,120,0 chrIV 17912 . T C 1051 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=0;QD=9.47;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1084,129,0 chrIV 17917 . G A 1140 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=0;QD=9.05;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1173,129,0 chrIV 17918 . A C 1095 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.89;MQ0=0;QD=8.62;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:1128,129,0 chrIV 17921 . C A 1146 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=25.50;MQ0=1;QD=7.80;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:1179,129,0 chrIV 17955 . C T 2010 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=34.76;MQ0=2;QD=11.49;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2043,225,0 chrIV 18120 . G A 4457.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.0359;MLEAC=2;MLEAF=1.00;MQ=32.04;MQ0=1;QD=21.96;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4457,507,0 chrIV 18141 . A C 4164.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.44;MQ0=1;QD=21.14;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4164,480,0 chrIV 18195 . A C 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=34.45;MQ0=0;MQRankSum=0.629;QD=18.22;ReadPosRankSum=1.666;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2893,350,0 chrIV 18200 . A G 2848 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.26;MQ0=0;QD=18.03;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2881,341,0 chrIV 18219 . A G 2517 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=17.60;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2550,305,0 chrIV 18231 . T A 2549 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.63;MQ0=3;QD=18.21;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2582,300,0 chrIV 18264 . T A 1944 filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=32.32;MQ0=4;QD=15.80;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1977,225,0 chrIV 18303 . C T 2094 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=4;QD=19.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2127,231,0 chrIV 18325 . T C 1801 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.7223;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=0;QD=17.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1834,219,0 chrIV 18333 . A G 1801 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=0;MQRankSum=-0.708;QD=17.32;ReadPosRankSum=3.371;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,99:104:99:1834,216,0 chrIV 18342 . A G 1833 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;MQRankSum=-2.425;QD=18.15;ReadPosRankSum=2.401;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1866,216,0 chrIV 18345 . G A 1871 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=0;QD=19.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1904,210,0 chrIV 18351 . A G 1670 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=0;MQRankSum=0.529;QD=17.58;ReadPosRankSum=1.696;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1703,201,0 chrIV 18357 . A C 1535 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;MQRankSum=-0.454;QD=17.64;ReadPosRankSum=2.919;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1568,183,0 chrIV 18360 . G T 948 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.25;MQ0=0;QD=16.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:981,111,0 chrIV 18361 . C T 942 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.25;MQ0=0;QD=15.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:975,111,0 chrIV 18362 . C T 917 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.25;MQ0=0;QD=15.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:950,111,0 chrIV 18363 . A G 892 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.25;MQ0=0;QD=15.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:925,111,0 chrIV 18369 . T A 1031 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.38;MQ0=0;QD=14.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1064,123,0 chrIV 18375 . C G 549 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.03;MQ0=0;QD=10.76;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:72:582,72,0 chrIV 18376 . T C 562 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.03;MQ0=0;QD=11.02;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:72:595,72,0 chrIV 18377 . T C 564 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.03;MQ0=0;QD=11.06;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:72:597,72,0 chrIV 18381 . A G 547 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.91;MQ0=0;QD=10.52;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:72:580,72,0 chrIV 18384 . A G 548 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.91;MQ0=0;QD=10.54;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:72:581,72,0 chrIV 18388 . C G 547 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.91;MQ0=0;QD=10.52;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:72:580,72,0 chrIV 18389 . C T 559 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.91;MQ0=0;QD=10.75;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:72:592,72,0 chrIV 18402 . G A 194 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.44;MQ0=0;QD=6.06;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,32:32:30:227,30,0 chrIV 18404 . C A 194 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.44;MQ0=0;QD=6.06;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,32:32:30:227,30,0 chrIV 18405 . A G 196 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.44;MQ0=0;QD=6.13;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,32:32:30:229,30,0 chrIV 18408 . T A 197 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=5.97;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,33:33:30:230,30,0 chrIV 18411 . A G 196 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.16;MQ0=0;QD=5.76;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,34:34:30:229,30,0 chrIV 18426 . C T 75.26 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.07;MQ0=0;QD=2.69;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:15:108,15,0 chrIV 18456 . A G 35.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.47;MQ0=0;QD=4.50;SB=-2.585e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:68,9,0 chrIV 18457 . A G 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.47;MQ0=0;QD=4.75;SB=-2.785e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:70,9,0 chrIV 18459 . C T 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.47;MQ0=0;QD=5.00;SB=-2.985e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:72,9,0 chrIV 18467 . C G 59.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.63;MQ0=0;QD=5.95;SB=-7.326e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:92,12,0 chrIV 18477 . G A 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.96;MQ0=0;QD=7.39;SB=-6.526e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:99,12,0 chrIV 18483 . G A 65.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.96;MQ0=0;QD=7.28;SB=-6.526e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:98,12,0 chrIV 18486 . T C 63.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.96;MQ0=0;QD=7.06;SB=-6.526e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:96,12,0 chrIV 18495 . A G 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.76;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:50,6,0 chrIV 18497 . T C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.96;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:51,6,0 chrIV 18498 . G A 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=4.56;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:54,6,0 chrIV 18499 . C A 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=4.76;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:55,6,0 chrIV 18531 . A T 104.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;MQRankSum=0.766;QD=2.42;ReadPosRankSum=0.766;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:1,42:43:15:137,15,0 chrIV 18540 . A G 139.06 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=2.62;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,53:53:21:172,21,0 chrIV 18571 . C G 202.01 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=3.06;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,66:66:27:235,27,0 chrIV 18588 . G A 235 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.05;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,58:58:30:268,30,0 chrIV 18590 . T G 244 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.21;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,58:58:30:277,30,0 chrIV 18603 . C T 154.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.80;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,55:55:21:187,21,0 chrIV 18605 . G A 156.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.84;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,55:55:21:189,21,0 chrIV 18606 . A G 149.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.71;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,55:55:21:182,21,0 chrIV 18612 . C T 222.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.83;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,58:58:27:255,27,0 chrIV 18615 . T A 223.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.91;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,57:57:27:256,27,0 chrIV 18624 . T G 179.03 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.32;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,54:54:24:212,24,0 chrIV 18651 . G A 44.97 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.94;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,48:48:9:77,9,0 chrIV 18663 . C T 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.14;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,43:43:9:81,9,0 chrIV 18664 . T C 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.09;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,43:43:9:79,9,0 chrIV 18671 . G C 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=1.02;SB=-2.298e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:9:79,9,0 chrIV 18675 . T C 139.06 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=2.90;SB=-6.507e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:21:172,21,0 chrIV 18682 . A G 129.06 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=3.00;SB=-9.307e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:21:162,21,0 chrIV 18683 . G C 135.06 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.42;MQ0=0;QD=3.00;SB=-1.161e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:21:168,21,0 chrIV 18702 . A C 967 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=0;QD=11.79;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1000,114,0 chrIV 18805 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;QD=24.16;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2715,291,0 chrIV 18882 . G A 2030 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=23.88;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2063,222,0 chrIV 18989 . G C 2339 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=21.26;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2372,279,0 chrIV 19084 . T C 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;MQRankSum=0.290;QD=19.89;ReadPosRankSum=2.403;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2141,246,0 chrIV 19119 . A G 1751 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.02;FS=0.000;HaplotypeScore=3.7317;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=19.24;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1784,204,0 chrIV 19143 . C T 1696 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=17.67;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1729,192,0 chrIV 19153 . T C 1459 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;QD=15.36;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1492,171,0 chrIV 19177 . T C 1258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.44;MQ0=0;MQRankSum=1.524;QD=12.58;ReadPosRankSum=1.663;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1291,147,0 chrIV 19180 . A G 1198 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.37;MQ0=0;QD=11.98;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1231,144,0 chrIV 19248 . G A 1909 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=16.75;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1942,219,0 chrIV 19249 . C T 1897 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=16.64;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1930,213,0 chrIV 19251 . G A 1906 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=16.29;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:1939,219,0 chrIV 19252 . G A 1909 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=16.32;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1942,219,0 chrIV 19376 . G A 2444 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.66;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2477,273,0 chrIV 19413 . C G 2506 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=19.1299;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=19.58;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2539,288,0 chrIV 19445 . C T 2544 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=21.38;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2577,279,0 chrIV 19455 . T C 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.389;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.8591;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;MQRankSum=0.215;QD=19.61;ReadPosRankSum=1.703;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2445,257,0 chrIV 19719 . G A 2756 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=22.97;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2789,303,0 chrIV 19746 . A C 2009 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=44.12;MQ0=0;QD=18.10;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2042,234,0 chrIV 19929 . G A 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=3.138;HaplotypeScore=5.0371;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;MQRankSum=-0.050;QD=20.86;ReadPosRankSum=1.456;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2912,321,0 chrIV 19934 . C T 3020 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=21.12;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3053,327,0 chrIV 20081 . G A 2395 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.48;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2428,264,0 chrIV 20112 . T G 2588 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.93;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2621,303,0 chrIV 20146 . C T 2479 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=20.66;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2512,276,0 chrIV 20160 . C G 2068 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=18.97;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2101,240,0 chrIV 20223 . C T 1281 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7027;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=15.25;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1314,141,0 chrIV 20232 . C T 1322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=81;Dels=0.00;FS=7.112;HaplotypeScore=4.3421;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=0.715;QD=16.32;ReadPosRankSum=-0.076;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1355,150,0 chrIV 20319 . T C 1569 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.07;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1602,183,0 chrIV 20444 . A C 1026 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=1.372;QD=21.37;ReadPosRankSum=1.660;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1059,120,0 chrIV 20495 . A T 721 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=17.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:84:754,84,0 chrIV 20578 . C T 481 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=5.8258;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.50;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:57:514,57,0 chrIV 20642 . T C 1157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-1.102;QD=21.04;ReadPosRankSum=1.669;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1190,135,0 chrIV 20659 . T C 1035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.598;QD=18.82;ReadPosRankSum=1.669;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1068,123,0 chrIV 20779 . T G 1728 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.20;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1761,201,0 chrIV 20785 . G A 1861 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.80;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1894,213,0 chrIV 20899 . C T 2528 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.1071;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=22.57;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2561,285,0 chrIV 20969 . C T 3304.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=22.48;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3304,357,0 chrIV 20989 . T G 2941 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=20.71;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2974,336,0 chrIV 21083 . G C 1989 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=16.04;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2022,228,0 chrIV 21086 . A T 2160 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.27;MQ0=0;QD=16.87;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2193,234,0 chrIV 21113 . G T 1385 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=0;QD=12.59;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1418,162,0 chrIV 21119 . A T 1439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.46;MQ0=0;MQRankSum=-1.026;QD=13.32;ReadPosRankSum=1.700;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1472,168,0 chrIV 21152 . T C 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.854;HaplotypeScore=1.7128;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;MQRankSum=-0.044;QD=18.03;ReadPosRankSum=1.674;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2179,243,0 chrIV 21165 . G A 2180 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.8632;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=18.96;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2213,240,0 chrIV 21255 . G C 3824.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=21.73;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3824,435,0 chrIV 21300 . G T 4578.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=24.88;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4578,486,0 chrIV 21337 . G A 3615.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=23.63;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3615,390,0 chrIV 21380 . T C 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-0.924;QD=21.74;ReadPosRankSum=1.703;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2663,303,0 chrIV 21431 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=21.58;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3668,411,0 chrIV 21450 . A T 4027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;MQRankSum=-0.948;QD=21.19;ReadPosRankSum=1.696;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4027,444,0 chrIV 21476 . C A 4194.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=19.15;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4194,474,0 chrIV 21481 . G A 4145.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=18.84;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4145,468,0 chrIV 21510 . A G 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=200;Dels=0.00;FS=2.883;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=0.019;QD=18.03;ReadPosRankSum=2.413;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:3605,420,0 chrIV 21652 . C T 3638.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.1015;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=22.32;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3638,408,0 chrIV 21677 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;MQRankSum=0.106;QD=20.48;ReadPosRankSum=1.669;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3358,396,0 chrIV 21692 . T G 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=163;Dels=0.00;FS=6.720;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;MQRankSum=-1.009;QD=19.63;ReadPosRankSum=2.419;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3233,378,0 chrIV 21759 . A G 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.500;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.6268;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=1.221;QD=20.87;ReadPosRankSum=1.709;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3164,354,0 chrIV 21781 . A G 3085 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.7187;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=19.90;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3118,354,0 chrIV 21807 . T C 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.1832;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.882;QD=19.67;ReadPosRankSum=1.689;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3200,366,0 chrIV 21893 . T A 4591.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.55;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4591,504,0 chrIV 21929 . A G 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=202;Dels=0.00;FS=6.308;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=2.069;QD=22.69;ReadPosRankSum=2.376;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:2,198:202:99:4583,525,0 chrIV 21964 . A G 4486.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6134;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.01;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4486,516,0 chrIV 22006 . A G 3733.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.45;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3733,429,0 chrIV 22049 . G T 3724.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.85;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3724,411,0 chrIV 22139 . C G 3938.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.63;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3938,450,0 chrIV 22166 . A G 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=171;Dels=0.00;FS=8.507;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.889;QD=21.84;ReadPosRankSum=3.192;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:4,166:171:99:3735,429,0 chrIV 22312 . T C 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=141;Dels=0.00;FS=3.235;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.312;QD=22.30;ReadPosRankSum=1.707;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3177,360,0 chrIV 22379 . C T 3416.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.58;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3416,372,0 chrIV 22468 . A T 2832 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=18.88;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2865,309,0 chrIV 22481 . G A 2748 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=19.49;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2781,306,0 chrIV 22513 . A G 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=0.475;QD=18.99;ReadPosRankSum=1.661;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2824,324,0 chrIV 22594 . A G 2380 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=13.6036;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.06;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2413,270,0 chrIV 22713 . C T 3037 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.52;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3070,336,0 chrIV 22728 . T A 2922 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=21.33;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2955,333,0 chrIV 22874 . A G 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.6519;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.079;QD=20.72;ReadPosRankSum=1.707;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2893,327,0 chrIV 22928 . A G 2756 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.04;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2789,318,0 chrIV 23066 . T C 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=164;Dels=0.00;FS=2.830;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.247;QD=22.77;ReadPosRankSum=2.345;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3734,426,0 chrIV 23143 . A G 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=161;Dels=0.00;FS=3.716;HaplotypeScore=12.7631;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.602;QD=23.68;ReadPosRankSum=1.710;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3812,426,0 chrIV 23241 . G A 3613.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.77;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3613,390,0 chrIV 23275 . G A 3820.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.15;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3820,408,0 chrIV 23305 . G A 3681.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.4680;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.72;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3681,399,0 chrIV 23368 . G A 2875 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2908,327,0 chrIV 23455 . C T 2977 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.20;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3010,324,0 chrIV 23647 . T C 2314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=115;Dels=0.00;FS=6.087;HaplotypeScore=12.6898;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.114;QD=20.12;ReadPosRankSum=2.869;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2347,267,0 chrIV 23797 . G A 2990 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.00;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3023,342,0 chrIV 24019 . G A 2337 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.85;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2370,261,0 chrIV 24553 . A G 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=160;Dels=0.00;FS=3.122;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.680;QD=19.83;ReadPosRankSum=1.688;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3206,363,0 chrIV 24564 . G A 3081 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=20.40;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3114,336,0 chrIV 24745 . C T 3691.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=17.2638;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.78;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3691,417,0 chrIV 24937 . T C 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=171;Dels=0.00;FS=2.963;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.426;QD=23.11;ReadPosRankSum=2.348;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3952,450,0 chrIV 25072 . G A 3780.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.21;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3780,426,0 chrIV 25192 . T G 2760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=123;Dels=0.00;FS=3.874;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.114;QD=22.44;ReadPosRankSum=1.704;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2793,321,0 chrIV 26268 . T C 1819 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.44;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1852,216,0 chrIV 26950 . C A 2385 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2418,267,0 chrIV 27072 . T C 2003 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.83;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2036,231,0 chrIV 27235 . T C 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=116;Dels=0.00;FS=2.904;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.481;QD=23.05;ReadPosRankSum=2.407;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2707,309,0 chrIV 27384 . G A 2307 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2340,252,0 chrIV 27545 . G T 2902 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2935,327,0 chrIV 27678 . G A 2087 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.7534;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.97;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2120,234,0 chrIV 27879 . G T 2548 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=23.59;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2581,288,0 chrIV 27904 . C T 2158 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.25;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2191,237,0 chrIV 27972 . T C 2874 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.55;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2907,336,0 chrIV 28063 . C T 2346 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.0573;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.22;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2379,255,0 chrIV 28077 . A G 2124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.458;QD=20.04;ReadPosRankSum=1.699;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2157,246,0 chrIV 28185 . A G 3108 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.1119;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.20;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3141,354,0 chrIV 28296 . G A 1645 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=19.13;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1678,186,0 chrIV 28308 . T A 1671 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=19.89;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1704,189,0 chrIV 28458 . C T 2536 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=23.27;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2569,291,0 chrIV 28487 . A G 2876 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=24.17;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2909,327,0 chrIV 28530 . A G 1926 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=17.20;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1959,225,0 chrIV 28537 . T C 1772 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=16.72;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1805,207,0 chrIV 28566 . A G 1215 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=0;QD=12.66;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1248,141,0 chrIV 28570 . C G 1086 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.97;MQ0=0;QD=12.07;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1119,129,0 chrIV 28578 . C T 1151 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;QD=12.93;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1184,135,0 chrIV 28639 . T C 1759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=97;Dels=0.00;FS=6.531;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;MQRankSum=-0.013;QD=18.13;ReadPosRankSum=2.348;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1792,204,0 chrIV 28654 . C T 2272 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=18.18;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2305,249,0 chrIV 28656 . T C 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=3.736;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-1.546;QD=17.25;ReadPosRankSum=1.705;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2275,261,0 chrIV 28782 . A G 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=120;Dels=0.01;FS=6.434;HaplotypeScore=10.5311;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=1.478;QD=22.49;ReadPosRankSum=2.408;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2732,312,0 chrIV 28853 . C T 2795 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=22.18;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2828,309,0 chrIV 28898 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.3887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=23.30;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3249,354,0 chrIV 28968 . C T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.70;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3606,396,0 chrIV 29103 . G A 3989.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=23.60;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3989,435,0 chrIV 29118 . T C 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.668;DP=161;Dels=0.00;FS=19.226;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=55.86;MQ0=0;MQRankSum=0.949;QD=0.30;ReadPosRankSum=-5.422;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:149,12:161:78:78,0,604 chrIV 29152 . T G 3483.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=17.86;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3483,399,0 chrIV 29654 . C T 4349.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=17.0608;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.64;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4349,468,0 chrIV 29693 . G A 3799.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.1313;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.22;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3799,420,0 chrIV 29701 . T C 3869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=189;Dels=0.00;FS=5.879;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-0.193;QD=20.47;ReadPosRankSum=2.952;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:3,185:189:99:3869,438,0 chrIV 29924 . T C 4505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=209;Dels=0.00;FS=6.832;HaplotypeScore=16.7557;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=0.112;QD=21.56;ReadPosRankSum=2.426;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:4505,507,0 chrIV 30086 . C T 3473.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=16.1941;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.31;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3473,378,0 chrIV 30128 . G A 3677.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.7702;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.43;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3677,405,0 chrIV 30404 . C T 3296.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=17.2920;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.38;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3296,351,0 chrIV 30545 . T C 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.417;QD=21.53;ReadPosRankSum=1.656;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2982,345,0 chrIV 30902 . T C 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.039;QD=22.85;ReadPosRankSum=1.640;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3473,402,0 chrIV 31224 . G T 2456 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.13;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2489,270,0 chrIV 31492 . G A 3612.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=23.61;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3612,384,0 chrIV 31511 . A G 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=3.542;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.808;QD=20.67;ReadPosRankSum=1.690;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3410,390,0 chrIV 31628 . A G 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.753;QD=20.45;ReadPosRankSum=1.714;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:3927,450,0 chrIV 31685 . C T 3207 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4989;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.27;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3240,354,0 chrIV 31709 . T C 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=138;Dels=0.00;FS=11.657;HaplotypeScore=8.6317;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.219;QD=21.55;ReadPosRankSum=2.949;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3007,339,0 chrIV 32090 . T A 2005 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=19.28;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2038,228,0 chrIV 32217 . G A 2690 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.0066;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.53;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2723,297,0 chrIV 32409 . T C 3893.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.59;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3893,441,0 chrIV 32904 . T A 4597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=208;Dels=0.00;FS=6.059;HaplotypeScore=16.6433;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.160;QD=22.10;ReadPosRankSum=2.762;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:4597,492,0 chrIV 33027 . G T 4910.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.83;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4910,531,0 chrIV 33135 . C G 2421 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.42;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2454,285,0 chrIV 33253 . A C 2122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.073;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.2347;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.166;QD=19.12;ReadPosRankSum=2.383;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2155,258,0 chrIV 33853 . G A 2035 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.56;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2068,225,0 chrIV 33856 . A G 1969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.141;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-0.120;QD=19.12;ReadPosRankSum=1.664;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,100:103:99:2002,231,0 chrIV 35037 . G A 3863.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.7067;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.44;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3863,420,0 chrIV 35807 . A G 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.111;QD=19.64;ReadPosRankSum=1.708;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2901,330,0 chrIV 35940 . G A 2872 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2905,318,0 chrIV 36103 . T C 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=3.854;HaplotypeScore=10.7637;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.528;QD=21.65;ReadPosRankSum=1.703;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2653,306,0 chrIV 36306 . G A 3672.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.16;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3672,402,0 chrIV 36367 . G A 3048 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3081,336,0 chrIV 37036 . T G 4359.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=17.8199;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.09;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,210:217:99:4359,515,0 chrIV 37069 . T C 4186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=204;Dels=0.00;FS=2.917;HaplotypeScore=15.5264;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.337;QD=20.52;ReadPosRankSum=2.377;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4186,492,0 chrIV 37123 . C T 3502.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.97;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3502,384,0 chrIV 37138 . A G 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-1.073;QD=18.21;ReadPosRankSum=1.711;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3019,351,0 chrIV 37431 . C T 3320.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.0445;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.55;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3320,369,0 chrIV 37486 . A G 3568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=156;Dels=0.00;FS=11.770;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.889;QD=22.87;ReadPosRankSum=2.955;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:3,151:156:99:3568,414,0 chrIV 37825 . A G 4900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=218;Dels=0.00;FS=3.687;HaplotypeScore=15.2366;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.943;QD=22.48;ReadPosRankSum=1.716;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:1,214:218:99:4900,552,0 chrIV 37865 . A G 4833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=222;Dels=0.00;FS=3.970;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.343;QD=21.77;ReadPosRankSum=1.685;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:4833,569,0 chrIV 38041 . C T 5773.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=15.8308;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.30;SB=-3.359e+03 GT:AD:DP:GQ:PL 1/1:0,266:271:99:5773,657,0 chrIV 38903 . A G 1971 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.04;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2004,228,0 chrIV 39281 . T C 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=126;Dels=0.00;FS=2.867;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.550;QD=23.87;ReadPosRankSum=2.410;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:2,121:126:99:3040,339,0 chrIV 39500 . T C 3769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.353;DP=171;Dels=0.00;FS=13.585;HaplotypeScore=9.6476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.690;QD=22.04;ReadPosRankSum=4.439;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:7,163:171:99:3769,432,0 chrIV 39587 . T C 4407.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.1333;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.37;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4407,513,0 chrIV 39908 . A G 3961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.714;DP=177;Dels=0.00;FS=11.580;HaplotypeScore=5.4196;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.138;QD=22.38;ReadPosRankSum=3.723;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:5,172:177:99:3961,453,0 chrIV 39958 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3789,405,0 chrIV 40439 . T C 3489.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.02;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3489,399,0 chrIV 40604 . G A 3069 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.1279;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3102,339,0 chrIV 40666 . G A 2441 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2474,267,0 chrIV 40838 . C T 1945 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1978,213,0 chrIV 40965 . G C 1952 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.33;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1985,228,0 chrIV 41387 . A G 3457.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.8968;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3457,387,0 chrIV 41590 . T C 2994 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.03;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3027,348,0 chrIV 41618 . G A 3051 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.43;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3084,333,0 chrIV 41966 . C T 3497.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.45;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3497,387,0 chrIV 42278 . C T 4233.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.6923;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.40;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4233,474,0 chrIV 42448 . C T 2725 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.71;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2758,306,0 chrIV 42535 . C T 2470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.254;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.3697;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.553;QD=21.29;ReadPosRankSum=0.657;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2503,267,0 chrIV 42966 . G C 4826.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=22.0003;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.98;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,226:230:99:4826,546,0 chrIV 43014 . C T 5449.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=14.9366;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.52;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5449,618,0 chrIV 43335 . C T 4506.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=19.1388;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.42;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4506,486,0 chrIV 43389 . C A 3915.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.50;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3915,438,0 chrIV 43482 . G A 3970.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=17.0028;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.01;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3970,435,0 chrIV 43834 . C A 1070 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=13.37;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1103,126,0 chrIV 45363 . T C 5985.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=19.6009;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.84;SB=-3.175e+03 GT:AD:DP:GQ:PL 1/1:0,271:274:99:5985,690,0 chrIV 45453 . C T 6342.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=19.8603;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=2;QD=21.50;SB=-3.012e+03 GT:AD:DP:GQ:PL 1/1:1,293:295:99:6342,705,0 chrIV 46068 . G C 1313 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.25;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1346,150,0 chrIV 46164 . T A 1793 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.14;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1826,204,0 chrIV 46179 . T G 1754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.271;DP=87;Dels=0.00;FS=18.292;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.338;QD=20.16;ReadPosRankSum=3.353;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:4,82:87:99:1787,204,0 chrIV 46292 . G A 3447.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.16;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3447,378,0 chrIV 46322 . G A 3401.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.47;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3401,363,0 chrIV 46397 . G A 1845 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.22;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,93:96:99:1878,216,0 chrIV 46818 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.03;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2735,309,0 chrIV 47243 . T C 4113.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.1396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4113,471,0 chrIV 47365 . T C 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.1354;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.612;QD=19.07;ReadPosRankSum=1.706;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2589,303,0 chrIV 47663 . C T 2540 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.5472;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.88;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2573,279,0 chrIV 48046 . A G 3108 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.73;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3141,363,0 chrIV 48065 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.77;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3269,366,0 chrIV 48241 . T C 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.289;QD=23.78;ReadPosRankSum=2.238;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:4162,465,0 chrIV 48267 . G T 3759.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.20;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3759,405,0 chrIV 48349 . G A 4247.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.55;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4247,465,0 chrIV 49497 . T A 2792 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2825,318,0 chrIV 49574 . C T 3107 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.72;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3140,339,0 chrIV 49687 . C G 3189 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3222,360,0 chrIV 49832 . G A 2945 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.65;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2978,321,0 chrIV 49881 . G A 3410.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.36;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3410,381,0 chrIV 50365 . C T 2594 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.62;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2627,285,0 chrIV 50502 . C T 2047 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=21.10;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2080,222,0 chrIV 50523 . T C 1709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=0.304;QD=17.62;ReadPosRankSum=1.696;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1742,204,0 chrIV 50545 . T G 1662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.4027;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=0.650;QD=17.31;ReadPosRankSum=0.541;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1695,192,0 chrIV 50610 . G A 1149 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=12.09;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1182,132,0 chrIV 50657 . T A 2279 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.13;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2312,255,0 chrIV 50736 . C T 3125 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=22.98;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3158,348,0 chrIV 50767 . C T 3148 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.33;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3181,345,0 chrIV 51478 . A G 3625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=23.9525;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.443;QD=20.83;ReadPosRankSum=1.692;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3625,417,0 chrIV 51529 . T A 4126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=184;Dels=0.00;FS=3.018;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.550;QD=22.42;ReadPosRankSum=2.423;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4126,462,0 chrIV 51859 . T C 4200.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.3567;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.32;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4200,480,0 chrIV 51985 . T C 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.974;QD=22.68;ReadPosRankSum=1.682;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3163,357,0 chrIV 52093 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.5763;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.86;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3754,423,0 chrIV 52421 . T C 3013 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.54;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3046,348,0 chrIV 52556 . G A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.17;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3577,396,0 chrIV 52663 . G T 4264.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.1295;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4264,480,0 chrIV 52702 . A G 4442.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=17.6987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4442,524,0 chrIV 52930 . T C 5997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.364;DP=269;Dels=0.00;FS=13.645;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.471;QD=22.29;ReadPosRankSum=3.351;SB=-3.044e+03 GT:AD:DP:GQ:PL 1/1:4,264:269:99:5997,693,0 chrIV 53011 . A G 5414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=242;Dels=0.00;FS=5.966;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.711;QD=22.37;ReadPosRankSum=2.946;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:3,237:242:99:5414,615,0 chrIV 53077 . T C 5024.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=16.6600;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5024,588,0 chrIV 53471 . G A 4499.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.1717;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4499,498,0 chrIV 53890 . A G 2978 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.09;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3011,345,0 chrIV 54379 . A G 3218.91 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.6012;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.67;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3252,369,0 chrIV 54490 . C T 3122 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.3896;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.13;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3155,339,0 chrIV 54558 . A G 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=158;Dels=0.00;FS=3.029;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.604;QD=21.44;ReadPosRankSum=2.324;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3387,390,0 chrIV 54724 . A G 3831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.5405;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.953;QD=22.67;ReadPosRankSum=1.691;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3831,435,0 chrIV 54882 . C T 4174.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.8801;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.97;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4174,453,0 chrIV 54946 . T C 3475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=174;Dels=0.00;FS=3.036;HaplotypeScore=19.4384;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.233;QD=19.97;ReadPosRankSum=1.692;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:3475,399,0 chrIV 55068 . T C 3655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=195;Dels=0.00;FS=9.580;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=-0.552;QD=18.74;ReadPosRankSum=2.913;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:3,192:195:99:3655,414,0 chrIV 55070 . C T 3779.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.2784;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=19.18;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:3779,405,0 chrIV 55222 . A G 3858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.0509;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.075;QD=22.17;ReadPosRankSum=1.712;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3858,438,0 chrIV 56020 . T A 3460.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.54;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3460,396,0 chrIV 56280 . A G 2817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=131;Dels=0.00;FS=2.785;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.163;QD=21.50;ReadPosRankSum=2.393;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2850,321,0 chrIV 56803 . A G 1396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.427;QD=20.23;ReadPosRankSum=1.682;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1429,162,0 chrIV 56929 . T C 761 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=14.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:53:90:794,90,0 chrIV 56962 . T A 369 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=16.77;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:45:402,45,0 chrIV 56967 . G A 326 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=16.30;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:39:359,39,0 chrIV 57157 . T G 1139 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=23.24;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1172,135,0 chrIV 57198 . T C 811 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=17.26;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:844,99,0 chrIV 57199 . T G 774 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;MQRankSum=-1.732;QD=16.47;ReadPosRankSum=1.659;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:96:807,96,0 chrIV 57200 . C A 849 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=17.33;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:96:882,96,0 chrIV 57234 . G C 1188 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=15.43;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1221,141,0 chrIV 57243 . G A 1297 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=15.08;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1330,144,0 chrIV 57334 . T C 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.203;QD=22.26;ReadPosRankSum=2.414;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3105,357,0 chrIV 57418 . G A 3286.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.48;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3286,378,0 chrIV 57525 . C T 4217.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.8905;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.43;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4217,462,0 chrIV 57646 . A G 3678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=169;Dels=0.00;FS=3.141;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.445;QD=21.76;ReadPosRankSum=1.691;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3678,417,0 chrIV 57718 . G A 4023.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.73;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4023,438,0 chrIV 57805 . C T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.87;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3457,384,0 chrIV 57851 . T G 3884.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.6149;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.32;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3884,441,0 chrIV 58114 . G C 3503.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.2405;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.90;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3503,405,0 chrIV 58177 . G A 4215.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.40;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4215,483,0 chrIV 58335 . T G 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=166;Dels=0.00;FS=3.010;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.231;QD=21.02;ReadPosRankSum=2.390;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3490,399,0 chrIV 58356 . C T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.15;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3810,426,0 chrIV 58661 . A G 3860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=3.166;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.122;QD=22.71;ReadPosRankSum=1.712;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3860,444,0 chrIV 58765 . T A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.0114;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.50;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3645,402,0 chrIV 59068 . T C 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=3.658;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-0.453;QD=22.40;ReadPosRankSum=1.626;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2968,333,0 chrIV 59114 . C T 2727 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.35;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2760,300,0 chrIV 59148 . C T 2798 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.56;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2831,321,0 chrIV 59314 . G A 3634.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.13;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3634,414,0 chrIV 59321 . T A 3757.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.1070;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=19.57;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3757,408,0 chrIV 59368 . A G 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.731;DP=205;Dels=0.00;FS=12.865;HaplotypeScore=11.4010;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.691;QD=18.14;ReadPosRankSum=2.956;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:3,202:205:99:3719,423,0 chrIV 59458 . A G 7356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=330;Dels=0.00;FS=16.955;HaplotypeScore=13.1617;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.554;QD=22.29;ReadPosRankSum=2.973;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:3,325:330:99:7356,878,0 chrIV 59640 . C T 12208.01 filter AC=2;AF=1.00;AN=2;DP=523;Dels=0.00;FS=0.000;HaplotypeScore=31.1948;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.34;SB=-5.974e+03 GT:AD:DP:GQ:PL 1/1:0,520:523:99:12208,1377,0 chrIV 59797 . G A 9952.01 filter AC=2;AF=1.00;AN=2;DP=467;Dels=0.00;FS=0.000;HaplotypeScore=6.1670;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.31;SB=-5.161e+03 GT:AD:DP:GQ:PL 1/1:0,467:467:99:9952,1101,0 chrIV 59800 . A G 9275.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=460;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-0.113;QD=20.16;ReadPosRankSum=1.725;SB=-4.914e+03 GT:AD:DP:GQ:PL 1/1:1,459:460:99:9275,1065,0 chrIV 59868 . T C 7995.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=422;Dels=0.00;FS=4.750;HaplotypeScore=29.1056;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=0.141;QD=18.95;ReadPosRankSum=1.715;SB=-3.445e+03 GT:AD:DP:GQ:PL 1/1:1,417:422:99:7995,918,0 chrIV 59896 . T A 8551.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=397;Dels=0.00;FS=4.404;HaplotypeScore=8.2592;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-1.331;QD=21.54;ReadPosRankSum=1.715;SB=-3.567e+03 GT:AD:DP:GQ:PL 1/1:1,396:397:99:8551,957,0 chrIV 59922 . C T 7896.01 filter AC=2;AF=1.00;AN=2;DP=379;Dels=0.00;FS=0.000;HaplotypeScore=9.5449;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.83;SB=-3.888e+03 GT:AD:DP:GQ:PL 1/1:0,373:379:99:7896,888,0 chrIV 60081 . C T 5267.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.4849;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.04;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,236:239:99:5267,588,0 chrIV 60151 . A G 3438.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=17.91;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3438,396,0 chrIV 60211 . T C 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=196;Dels=0.00;FS=7.993;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.598;QD=20.71;ReadPosRankSum=2.412;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:4059,462,0 chrIV 60721 . A T 1834 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1867,207,0 chrIV 61039 . T C 4927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=227;Dels=0.00;FS=5.212;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=1.701;QD=21.70;ReadPosRankSum=3.337;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:4,222:227:99:4927,573,0 chrIV 61061 . C T 4956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.395;QD=20.06;ReadPosRankSum=-0.806;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:4956,558,0 chrIV 61127 . A G 6891.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=21.4457;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.81;SB=-3.675e+03 GT:AD:DP:GQ:PL 1/1:0,315:316:99:6891,800,0 chrIV 61190 . A G 6431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=12.8069;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.709;QD=21.58;ReadPosRankSum=1.673;SB=-3.078e+03 GT:AD:DP:GQ:PL 1/1:1,294:298:99:6431,723,0 chrIV 61275 . C T 6116.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=24.5197;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.77;SB=-3.339e+03 GT:AD:DP:GQ:PL 1/1:0,277:281:99:6116,675,0 chrIV 62217 . G T 6606.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=17.9961;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.70;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,291:291:99:6606,741,0 chrIV 62570 . A G 5350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=233;Dels=0.00;FS=4.017;HaplotypeScore=9.4245;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.971;QD=22.96;ReadPosRankSum=1.702;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:5350,615,0 chrIV 62726 . T C 4245.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.2458;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=20.71;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4245,498,0 chrIV 62757 . G A 4815.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=8.0907;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=20.15;SB=-2.920e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:4815,555,0 chrIV 62793 . C T 4202.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.9018;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=18.93;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4202,471,0 chrIV 62804 . A G 4015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=-0.373;QD=16.94;ReadPosRankSum=1.703;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:4015,465,0 chrIV 62811 . A G 4019.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=7.7114;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=16.54;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,240:243:99:4019,471,0 chrIV 63504 . G A 4345.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.5893;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.75;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4345,468,0 chrIV 63536 . G C 3465.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.04;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3465,399,0 chrIV 63545 . C T 3471.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.1611;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=18.86;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3471,387,0 chrIV 63839 . G C 3896.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.6898;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.01;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3896,444,0 chrIV 63900 . T A 4567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.0754;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.384;QD=24.55;ReadPosRankSum=1.713;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4567,495,0 chrIV 63992 . G A 5098.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.0603;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5098,567,0 chrIV 64029 . T C 4834.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=19.5423;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.07;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4834,549,0 chrIV 64151 . T C 4432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=203;Dels=0.00;FS=3.709;HaplotypeScore=8.5706;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.149;QD=21.83;ReadPosRankSum=1.681;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4432,507,0 chrIV 64431 . G C 2931 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.20;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2964,342,0 chrIV 64607 . T C 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=140;Dels=0.00;FS=7.276;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.062;QD=20.60;ReadPosRankSum=2.307;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2917,327,0 chrIV 65250 . T C 3469.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3469,396,0 chrIV 65350 . T C 2897 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.8258;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=20.99;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2930,336,0 chrIV 65456 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.27;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3115,342,0 chrIV 65684 . G A 1743 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.58;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1776,195,0 chrIV 65690 . T A 1736 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.19;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1769,195,0 chrIV 65808 . A G 2081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=95;Dels=0.00;FS=6.941;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=1.413;QD=21.91;ReadPosRankSum=2.294;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2114,240,0 chrIV 65844 . C T 2017 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7734;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=22.66;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2050,219,0 chrIV 65858 . T C 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=87;Dels=0.00;FS=2.635;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-1.754;QD=19.43;ReadPosRankSum=2.334;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:2,83:87:99:1723,201,0 chrIV 66168 . C A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.72;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3267,366,0 chrIV 66169 . T C 3023 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.15;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3056,360,0 chrIV 66230 . T C 3876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=1.017;QD=21.07;ReadPosRankSum=1.676;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3876,438,0 chrIV 66324 . G A 4511.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.67;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4511,498,0 chrIV 66345 . G C 4142.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.8316;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.69;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4142,465,0 chrIV 66478 . T C 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=182;Dels=0.00;FS=9.252;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.402;QD=20.97;ReadPosRankSum=2.916;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:3,177:182:99:3816,438,0 chrIV 66552 . G T 5296.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=16.9007;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.23;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5296,594,0 chrIV 66720 . C T 5595.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=4.7918;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=21.52;SB=-3.309e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5595,606,0 chrIV 66726 . C A 5705.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=21.29;SB=-3.439e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:5705,639,0 chrIV 66834 . G T 4856.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.66;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4856,528,0 chrIV 66837 . C T 4526.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.42;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4526,510,0 chrIV 66945 . A G 6072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=22.7464;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-1.259;QD=22.08;ReadPosRankSum=1.694;SB=-3.290e+03 GT:AD:DP:GQ:PL 1/1:1,270:275:99:6072,696,0 chrIV 67529 . A C 1790 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.45;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1823,204,0 chrIV 67659 . T C 1327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.195;QD=23.28;ReadPosRankSum=2.364;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1360,156,0 chrIV 67718 . A G 1737 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=24.46;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1770,198,0 chrIV 67805 . A C 1211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=3.736;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=0.000;QD=23.29;ReadPosRankSum=1.666;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1244,141,0 chrIV 67840 . T C 1356 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=62.5418;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=19.10;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1389,156,0 chrIV 67845 . G C 1406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.443;DP=74;Dels=0.00;FS=12.357;HaplotypeScore=60.4134;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-0.495;QD=19.00;ReadPosRankSum=3.532;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:5,69:74:99:1439,165,0 chrIV 68082 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.46;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3153,342,0 chrIV 68235 . A G 2948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.544;QD=20.05;ReadPosRankSum=1.638;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2981,342,0 chrIV 68451 . T C 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.2348;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.600;QD=20.58;ReadPosRankSum=1.709;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3120,366,0 chrIV 68676 . G A 3627.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.39;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3627,399,0 chrIV 68677 . T C 3454.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.86;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3454,399,0 chrIV 68840 . T C 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=3.099;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.314;QD=22.35;ReadPosRankSum=1.662;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3353,381,0 chrIV 69486 . C T 3687.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.08;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3687,414,0 chrIV 69990 . A G 3684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.4029;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.745;QD=21.42;ReadPosRankSum=1.712;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3684,423,0 chrIV 70242 . A T 4251.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.0382;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.14;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4251,471,0 chrIV 70736 . T C 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=88;Dels=0.00;FS=3.647;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.276;QD=21.34;ReadPosRankSum=1.693;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1911,222,0 chrIV 70900 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=15.1124;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.91;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2814,309,0 chrIV 71168 . T G 4037.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.6283;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.25;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4037,462,0 chrIV 71207 . C T 4078.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.02;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4078,462,0 chrIV 71264 . A G 3765.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.35;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3765,417,0 chrIV 71523 . T G 2861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=134;Dels=0.00;FS=6.395;HaplotypeScore=9.5594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.173;QD=21.35;ReadPosRankSum=2.375;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,129:134:99:2894,333,0 chrIV 71645 . C T 2873 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2906,330,0 chrIV 72290 . T C 2107 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.5723;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.28;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2140,246,0 chrIV 72338 . C T 2034 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.75;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2067,231,0 chrIV 72373 . G A 2777 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2810,309,0 chrIV 72485 . C T 2424 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2457,270,0 chrIV 72869 . G A 3931.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.36;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:3931,432,0 chrIV 72872 . A G 3635.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=18.08;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3635,405,0 chrIV 72956 . T C 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=8.937;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.646;QD=21.14;ReadPosRankSum=2.361;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2971,342,0 chrIV 73757 . A G 3203 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.8079;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.09;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3236,366,0 chrIV 74594 . C T 5270.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=18.2942;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.69;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5270,573,0 chrIV 74731 . G A 3632.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.6139;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.70;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3632,393,0 chrIV 74781 . G A 3756.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.7306;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.22;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3756,408,0 chrIV 74917 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-1.173;QD=21.83;ReadPosRankSum=1.695;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4060,465,0 chrIV 74939 . T C 4269.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-1.578;QD=21.03;ReadPosRankSum=1.698;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4269,489,0 chrIV 75082 . G A 3704.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.92;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3704,414,0 chrIV 75112 . G A 4129.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.08;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4129,453,0 chrIV 75301 . G A 3295.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.9078;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.37;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3295,360,0 chrIV 75776 . C A 6273.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-3.426e+03 GT:AD:DP:GQ:PL 1/1:0,289:290:99:6273,708,0 chrIV 75911 . G A 4464.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.55;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4464,486,0 chrIV 76252 . T A 4477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.608;QD=22.61;ReadPosRankSum=1.697;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4477,501,0 chrIV 76353 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.60;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3481,378,0 chrIV 76415 . A G 4293.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.35;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4293,506,0 chrIV 76974 . A G 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=8.200;HaplotypeScore=12.9558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.874;QD=23.36;ReadPosRankSum=2.371;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3668,414,0 chrIV 77029 . T C 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=3.142;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.879;QD=22.18;ReadPosRankSum=1.680;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3005,348,0 chrIV 77295 . A G 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.00;FS=4.523;HaplotypeScore=11.1328;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.146;QD=22.46;ReadPosRankSum=1.707;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3110,357,0 chrIV 77418 . T C 3275.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.3893;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.73;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3275,378,0 chrIV 77733 . A G 4106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.9885;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.335;QD=22.56;ReadPosRankSum=1.713;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4106,465,0 chrIV 78196 . C T 2038 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2071,228,0 chrIV 78270 . T C 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=7.035;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.650;QD=21.37;ReadPosRankSum=2.390;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2661,306,0 chrIV 78578 . G A 4754.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=20.23;SB=-2.831e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4754,531,0 chrIV 78587 . C T 4781.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=19.51;SB=-2.989e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:4781,516,0 chrIV 78590 . A G 4422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.974;DP=243;Dels=0.00;FS=19.831;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;MQRankSum=-2.048;QD=18.20;ReadPosRankSum=4.129;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:6,233:243:99:4422,501,0 chrIV 78617 . G C 4077.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=17.28;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,232:236:99:4077,471,0 chrIV 78644 . T A 3673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=226;Dels=0.00;FS=3.148;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;MQRankSum=-1.424;QD=16.25;ReadPosRankSum=1.701;SB=-2.950e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:3673,399,0 chrIV 78728 . C T 4037.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.4463;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.14;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4037,441,0 chrIV 78945 . C G 2828 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.9385;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.92;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2861,324,0 chrIV 79162 . A T 1648 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=22.58;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1681,183,0 chrIV 79321 . G A 2519 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=25.44;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2552,291,0 chrIV 79387 . C T 2233 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;QD=17.58;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2266,249,0 chrIV 79389 . C T 2079 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.09;MQ0=0;QD=16.77;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2112,237,0 chrIV 79541 . G A 3418.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.8895;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.74;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3418,369,0 chrIV 79621 . C T 3057 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=19.85;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3090,336,0 chrIV 79683 . T A 2179 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=18.31;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2212,240,0 chrIV 79687 . T A 2054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;MQRankSum=-0.693;QD=17.12;ReadPosRankSum=1.646;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2087,237,0 chrIV 79744 . G T 2810 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.13;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2843,321,0 chrIV 79763 . C T 3143 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.96;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3176,345,0 chrIV 79782 . T C 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=190;Dels=0.00;FS=2.850;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.994;QD=18.15;ReadPosRankSum=2.424;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:3449,393,0 chrIV 79855 . G A 3650.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.53;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3650,423,0 chrIV 79893 . T A 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=2.894;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.453;QD=22.37;ReadPosRankSum=2.363;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3825,411,0 chrIV 79909 . G A 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.991;DP=162;Dels=0.00;FS=3.021;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-1.497;QD=19.67;ReadPosRankSum=0.622;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3219,333,0 chrIV 80089 . G A 4859.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.4611;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=22.19;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4859,549,0 chrIV 80250 . C T 5171.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=4.4472;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=21.64;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5171,591,0 chrIV 80251 . C A 5170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=4.4472;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;MQRankSum=-0.509;QD=21.63;ReadPosRankSum=1.630;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:5170,576,0 chrIV 80312 . G T 4013.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.3836;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=21.23;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4013,432,0 chrIV 80353 . A G 4594.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.0411;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=21.07;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4594,531,0 chrIV 80374 . T C 4432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=221;Dels=0.00;FS=5.790;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;MQRankSum=0.157;QD=20.05;ReadPosRankSum=1.716;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:4432,516,0 chrIV 80379 . T C 4385.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=19.40;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4385,504,0 chrIV 80414 . G A 3524.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=39.87;MQ0=0;QD=17.45;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:3524,390,0 chrIV 80430 . G T 2474 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.9025;MLEAC=2;MLEAF=1.00;MQ=33.49;MQ0=0;QD=14.30;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,169:173:99:2507,294,0 chrIV 80440 . T A 2150 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=5.191;HaplotypeScore=2.6940;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;MQRankSum=1.413;QD=14.14;ReadPosRankSum=1.709;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2183,240,0 chrIV 80445 . A T 2154 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;MQRankSum=-0.146;QD=15.06;ReadPosRankSum=2.415;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2187,237,0 chrIV 80448 . C T 2092 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=14.84;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2125,225,0 chrIV 80454 . G C 1927 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.86;MQ0=0;QD=13.86;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1960,222,0 chrIV 80467 . G A 1793 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.11;MQ0=0;QD=14.34;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1826,198,0 chrIV 80483 . A G 1646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=2.880;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.15;MQ0=0;MQRankSum=-0.578;QD=13.95;ReadPosRankSum=2.408;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:1679,192,0 chrIV 80506 . T C 1767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=3.432;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;MQRankSum=-1.187;QD=16.36;ReadPosRankSum=1.700;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1800,204,0 chrIV 80612 . A G 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;MQRankSum=-1.675;QD=19.03;ReadPosRankSum=1.646;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2336,270,0 chrIV 80619 . T G 1961 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=17.51;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1994,237,0 chrIV 80742 . C A 3964.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=24.17;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3964,441,0 chrIV 80820 . C A 3031 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.96;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3064,345,0 chrIV 80884 . A G 3586.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.75;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3586,405,0 chrIV 80929 . G A 3560.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.02;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.58;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3560,396,0 chrIV 80964 . T A 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.198;DP=162;Dels=0.01;FS=17.427;HaplotypeScore=18.1627;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.527;QD=23.20;ReadPosRankSum=3.318;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:4,157:161:99:3758,408,0 chrIV 81036 . C A 3195 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=21.2742;MLEAC=2;MLEAF=1.00;MQ=60.38;MQ0=0;QD=22.82;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3228,360,0 chrIV 81068 . T C 2876 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=12.1070;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.47;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2909,327,0 chrIV 81145 . T C 2368 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.24;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2401,276,0 chrIV 81156 . A G 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=116;Dels=0.00;FS=7.360;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.074;QD=19.22;ReadPosRankSum=2.407;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2262,255,0 chrIV 81157 . T C 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-1.495;QD=19.24;ReadPosRankSum=1.673;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2284,255,0 chrIV 81181 . A G 2275 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=17.23;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2308,267,0 chrIV 81257 . T G 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=143;Dels=0.00;FS=5.947;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.738;QD=21.59;ReadPosRankSum=2.951;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:3121,351,0 chrIV 81298 . C G 3754.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=15.5486;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.46;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3754,432,0 chrIV 81537 . T G 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=142;Dels=0.00;FS=3.105;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.910;QD=23.26;ReadPosRankSum=1.682;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,138:142:99:3303,378,0 chrIV 81570 . T C 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.2666;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=-0.661;QD=19.70;ReadPosRankSum=1.709;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3027,348,0 chrIV 81572 . G A 3099 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=4.2666;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=20.80;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3132,336,0 chrIV 81585 . T C 2706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-1.564;QD=18.79;ReadPosRankSum=1.684;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2739,306,0 chrIV 81776 . T C 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=160;Dels=0.00;FS=6.849;HaplotypeScore=11.1429;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.683;QD=22.36;ReadPosRankSum=2.419;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3578,405,0 chrIV 81868 . A G 3706.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.60;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3706,414,0 chrIV 82474 . G A 2232 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=19.75;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2265,255,0 chrIV 82548 . T C 2164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.476;QD=23.27;ReadPosRankSum=1.694;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2197,252,0 chrIV 82622 . G C 2476 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.51;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2509,285,0 chrIV 82754 . A T 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=143;Dels=0.00;FS=8.779;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.826;QD=23.47;ReadPosRankSum=2.380;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3356,369,0 chrIV 82818 . A G 3951.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.52;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3951,444,0 chrIV 84159 . T C 4570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=3.765;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.129;QD=24.18;ReadPosRankSum=1.714;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4570,510,0 chrIV 84201 . T C 4528.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.4687;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.87;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,194:198:99:4528,519,0 chrIV 84392 . T C 3646.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.4242;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.96;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3646,429,0 chrIV 85011 . G A 4137.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.3725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.99;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4137,477,0 chrIV 85442 . T C 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=3.066;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.592;QD=23.66;ReadPosRankSum=1.710;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3739,420,0 chrIV 87227 . C T 3173 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.87;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3206,345,0 chrIV 87483 . G A 5313.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.71;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5313,585,0 chrIV 88023 . A T 1367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.225;QD=16.67;ReadPosRankSum=2.239;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1400,179,0 chrIV 88024 . T A 1379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.468;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.996;QD=17.02;ReadPosRankSum=1.559;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1412,179,0 chrIV 88301 . T C 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.9624;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.000;QD=22.07;ReadPosRankSum=1.705;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2880,327,0 chrIV 88441 . C T 4226.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.72;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:4226,456,0 chrIV 88760 . G A 4592.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.5662;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.92;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4592,501,0 chrIV 89156 . T C 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.062;QD=22.93;ReadPosRankSum=1.682;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3220,363,0 chrIV 89504 . C T 4407.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.3855;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.95;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4407,492,0 chrIV 90116 . C T 3186 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.7976;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.26;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3219,348,0 chrIV 90257 . A C 3740.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.52;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3740,426,0 chrIV 90638 . A C 2728 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.63;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,134:139:99:2761,315,0 chrIV 90700 . A G 2752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.0143;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.988;QD=20.39;ReadPosRankSum=1.681;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2785,327,0 chrIV 90844 . T A 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.060;QD=22.57;ReadPosRankSum=1.680;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3057,348,0 chrIV 90945 . A G 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=154;Dels=0.00;FS=3.069;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.478;QD=19.93;ReadPosRankSum=1.663;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,149:154:99:3102,348,0 chrIV 90975 . G A 3170 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.5501;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.97;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3203,351,0 chrIV 91090 . G T 3591.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4159;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.26;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3591,381,0 chrIV 91201 . T C 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=3.962;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.432;QD=21.99;ReadPosRankSum=1.650;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2826,318,0 chrIV 91318 . T C 2008 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=22.31;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2041,231,0 chrIV 91325 . G T 2017 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=22.66;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2050,222,0 chrIV 91537 . A G 2457 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.2990;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.82;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2490,291,0 chrIV 91555 . T C 2486 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.43;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2519,285,0 chrIV 91968 . T C 4129.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.07;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4129,474,0 chrIV 92098 . T C 3197 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.05;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3230,366,0 chrIV 92134 . T A 3017 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.81;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3050,345,0 chrIV 94038 . A G 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=6.115;HaplotypeScore=9.7474;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=-1.234;QD=23.72;ReadPosRankSum=1.682;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3321,375,0 chrIV 94411 . G A 5491.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=21.6861;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.69;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5491,595,0 chrIV 94444 . T A 5080.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.6863;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.18;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5080,570,0 chrIV 94538 . T G 5783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=252;Dels=0.00;FS=2.551;HaplotypeScore=24.3397;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.823;QD=22.95;ReadPosRankSum=2.940;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:3,247:252:99:5783,654,0 chrIV 94690 . A G 4741.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.8488;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.13;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4741,546,0 chrIV 95871 . A G 2151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.167;QD=20.68;ReadPosRankSum=1.666;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2184,252,0 chrIV 96217 . T C 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-0.012;QD=20.72;ReadPosRankSum=1.709;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3120,360,0 chrIV 96221 . G A 3344.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.29;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3344,354,0 chrIV 96268 . G A 2873 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.3221;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.15;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2906,318,0 chrIV 96295 . C T 2403 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.8697;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=17.67;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2436,276,0 chrIV 96663 . G A 3531.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.6390;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.08;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3531,384,0 chrIV 96799 . T C 2269 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.21;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2302,264,0 chrIV 97285 . T C 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.081;QD=23.41;ReadPosRankSum=1.711;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3863,447,0 chrIV 98318 . A T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.00;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3312,360,0 chrIV 98336 . A C 3230.05 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.82;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3264,375,0 chrIV 98442 . G A 4058.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.59;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4058,438,0 chrIV 99689 . A G 3986.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.0978;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.59;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3986,447,0 chrIV 99854 . G C 4719.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.58;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4719,540,0 chrIV 99896 . T C 4381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=212;Dels=0.00;FS=8.568;HaplotypeScore=17.9287;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.903;QD=20.67;ReadPosRankSum=0.948;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:2,209:212:99:4381,501,0 chrIV 100715 . A G 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.00;FS=3.011;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.463;QD=23.10;ReadPosRankSum=2.416;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3373,384,0 chrIV 101097 . C A 2176 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=86.6321;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;QD=16.61;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2209,249,0 chrIV 101103 . C T 1986 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=87.0108;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;QD=15.64;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,122:127:99:2019,231,0 chrIV 101143 . A C 1696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=130;Dels=0.02;FS=3.018;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;MQRankSum=-1.585;QD=13.05;ReadPosRankSum=2.373;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:1729,201,0 chrIV 101144 . A G 1674 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.02;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=13.08;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1707,198,0 chrIV 101326 . T C 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=117;Dels=0.01;FS=2.699;HaplotypeScore=10.5665;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-0.332;QD=21.77;ReadPosRankSum=2.407;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2580,294,0 chrIV 101419 . T A 3545.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.6314;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.79;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3545,381,0 chrIV 101679 . C T 2873 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2906,321,0 chrIV 102076 . A G 4087.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=22.33;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4087,474,0 chrIV 102172 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3560,414,0 chrIV 102617 . C T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.45;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3776,414,0 chrIV 102955 . C T 4130.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.51;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4130,459,0 chrIV 102979 . A T 4274.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.03;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4274,468,0 chrIV 103171 . T C 3499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=175;Dels=0.00;FS=7.529;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.291;QD=19.99;ReadPosRankSum=2.379;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:2,171:175:99:3499,408,0 chrIV 103365 . A T 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.7425;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.797;QD=21.48;ReadPosRankSum=1.705;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2783,306,0 chrIV 103456 . T C 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.295;HaplotypeScore=11.8100;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;MQRankSum=0.000;QD=22.29;ReadPosRankSum=1.677;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2841,321,0 chrIV 103617 . G T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.39;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3461,378,0 chrIV 104069 . A G 2799 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.44;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2832,321,0 chrIV 104093 . A G 3100 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.7023;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.39;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3133,360,0 chrIV 104780 . G A 3305.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.18;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3305,360,0 chrIV 104854 . C T 3740.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.53;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3740,411,0 chrIV 104927 . A C 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=155;Dels=0.00;FS=3.038;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=1.276;QD=18.67;ReadPosRankSum=2.418;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:2927,339,0 chrIV 104933 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=18.06;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:2940,333,0 chrIV 105197 . T C 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=159;Dels=0.02;FS=3.095;HaplotypeScore=6.7193;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-1.643;QD=19.75;ReadPosRankSum=1.710;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3173,366,0 chrIV 105215 . C T 3131 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.87;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3164,348,0 chrIV 105289 . T C 2752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=3.405;HaplotypeScore=5.8057;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=-1.581;QD=19.80;ReadPosRankSum=1.682;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2785,318,0 chrIV 105348 . C G 2535 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7531;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=14.91;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2568,294,0 chrIV 105366 . C T 2453 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.01;FS=0.000;HaplotypeScore=4.7327;MLEAC=2;MLEAF=1.00;MQ=47.14;MQ0=0;QD=13.78;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:2486,273,0 chrIV 105373 . G A 2525 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=14.27;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:2558,276,0 chrIV 105784 . A G 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.283;DP=178;Dels=0.00;FS=8.091;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.721;QD=19.97;ReadPosRankSum=3.273;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:4,174:178:99:3555,408,0 chrIV 105920 . G A 5171.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.1615;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.78;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,223:227:99:5171,582,0 chrIV 105948 . G A 4111.01 SnpCluster AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=20.35;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4111,444,0 chrIV 105955 . T C 3827.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.956;DP=207;Dels=0.00;FS=2.567;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;MQRankSum=-1.405;QD=18.49;ReadPosRankSum=2.946;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:3,203:207:99:3827,429,0 chrIV 105958 . T C 3594.01 SnpCluster AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=17.62;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3594,411,0 chrIV 106084 . A G 4599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=214;Dels=0.00;FS=3.348;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.000;QD=21.49;ReadPosRankSum=1.700;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4599,540,0 chrIV 106700 . C T 4180.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.22;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4180,450,0 chrIV 106727 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.3151;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.824;QD=21.78;ReadPosRankSum=1.711;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3593,399,0 chrIV 106840 . T G 4410.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=16.1945;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.62;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,200:204:99:4410,521,0 chrIV 108281 . C T 3069 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3102,342,0 chrIV 108371 . C T 2456 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2489,276,0 chrIV 108611 . C T 2596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.447;QD=20.77;ReadPosRankSum=0.112;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2629,291,0 chrIV 108917 . G A 3172 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3205,357,0 chrIV 109004 . A T 3065 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.54;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3098,351,0 chrIV 109094 . A G 3167 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.30;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3200,357,0 chrIV 109279 . G A 3080 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=25.04;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3113,339,0 chrIV 109457 . A G 3667.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.70;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3667,423,0 chrIV 109468 . C T 3751.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=22.20;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3751,414,0 chrIV 109836 . A G 5883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=272;Dels=0.00;FS=10.302;HaplotypeScore=22.0962;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.729;QD=21.63;ReadPosRankSum=2.907;SB=-2.976e+03 GT:AD:DP:GQ:PL 1/1:3,267:272:99:5883,689,0 chrIV 110285 . C T 4387.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=16.6073;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.94;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4387,483,0 chrIV 110696 . T C 3673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.020;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.140;QD=19.96;ReadPosRankSum=2.076;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3673,417,0 chrIV 111143 . C T 1288 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.60;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1321,147,0 chrIV 111192 . A G 1924 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.46;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1957,219,0 chrIV 111252 . G A 1884 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1917,216,0 chrIV 111349 . A G 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=3.762;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=1.279;QD=21.75;ReadPosRankSum=1.700;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2360,267,0 chrIV 111373 . G A 2775 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.85;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2808,303,0 chrIV 111415 . C T 3387.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.1159;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.28;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3387,381,0 chrIV 111651 . T C 3707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=160;Dels=0.00;FS=5.681;HaplotypeScore=15.4761;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.209;QD=23.17;ReadPosRankSum=2.943;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:3,156:160:99:3707,417,0 chrIV 111716 . C T 2955 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2988,324,0 chrIV 111753 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.2314;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.34;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2807,303,0 chrIV 111870 . T C 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=162;Dels=0.00;FS=3.037;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.298;QD=20.41;ReadPosRankSum=2.388;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:3307,381,0 chrIV 111953 . A G 3025 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.63;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3058,345,0 chrIV 112063 . C T 3083 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=15.2384;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.56;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3116,333,0 chrIV 112122 . C T 2955 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.81;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2988,324,0 chrIV 112141 . T C 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=171;Dels=0.00;FS=2.742;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.180;QD=21.09;ReadPosRankSum=2.392;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3607,402,0 chrIV 112233 . A G 3842.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0178;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3842,438,0 chrIV 112308 . C T 5268.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.6392;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.50;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5268,570,0 chrIV 112560 . A G 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.051;DP=193;Dels=0.00;FS=5.248;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.832;QD=20.36;ReadPosRankSum=3.378;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:4,189:193:99:3929,456,0 chrIV 112746 . T A 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=120;Dels=0.00;FS=7.583;HaplotypeScore=9.4678;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.258;QD=21.51;ReadPosRankSum=2.367;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2614,285,0 chrIV 112776 . T C 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=127;Dels=0.00;FS=6.118;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-1.468;QD=19.83;ReadPosRankSum=2.850;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2551,300,0 chrIV 112788 . C T 2996 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=3.9571;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.52;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3029,330,0 chrIV 113136 . T C 2525 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.36;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2558,294,0 chrIV 113151 . C T 2819 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.43;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2852,324,0 chrIV 113458 . G A 2506 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.21;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2539,273,0 chrIV 113472 . A T 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=134;Dels=0.00;FS=5.473;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=0.078;QD=18.60;ReadPosRankSum=1.680;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2525,282,0 chrIV 113547 . G A 3134 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=20.62;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3167,363,0 chrIV 113548 . T A 3205.99 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=154;Dels=0.00;FS=2.752;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=0.008;QD=20.82;ReadPosRankSum=2.418;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3239,354,0 chrIV 113554 . T C 3316.01 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.8709;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=19.17;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3316,375,0 chrIV 114010 . T G 5512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=245;Dels=0.00;FS=12.100;HaplotypeScore=7.6629;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-2.231;QD=22.50;ReadPosRankSum=2.889;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:3,241:245:99:5512,630,0 chrIV 114047 . G A 4939.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.08;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4939,546,0 chrIV 114144 . T A 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=5.760;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.748;QD=22.75;ReadPosRankSum=1.689;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3686,402,0 chrIV 114147 . C T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.26;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3444,390,0 chrIV 114170 . T G 3138 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.51;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3171,360,0 chrIV 114279 . A T 3322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.745;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.295;QD=24.43;ReadPosRankSum=1.706;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3322,363,0 chrIV 114324 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=19.79;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2704,285,0 chrIV 114328 . A C 2439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=136;Dels=0.00;FS=13.932;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=-0.858;QD=17.93;ReadPosRankSum=2.948;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:3,132:136:99:2472,279,0 chrIV 114468 . C T 2294 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=18.65;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2327,258,0 chrIV 114482 . A G 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=1.595;QD=17.41;ReadPosRankSum=1.705;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2227,252,0 chrIV 114797 . T C 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3090;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.467;QD=22.95;ReadPosRankSum=1.702;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2672,297,0 chrIV 114892 . A G 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.1045;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.637;QD=23.05;ReadPosRankSum=1.707;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3168,363,0 chrIV 115035 . A C 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=4.085;HaplotypeScore=4.6856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.306;QD=23.27;ReadPosRankSum=1.677;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4374,498,0 chrIV 115423 . C T 3685.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.0120;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.90;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3685,402,0 chrIV 115568 . C T 3871.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.5662;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3871,429,0 chrIV 115658 . G T 2992 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3025,333,0 chrIV 116026 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=19.18;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2968,327,0 chrIV 116227 . A G 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=3.332;HaplotypeScore=7.2268;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.188;QD=21.75;ReadPosRankSum=1.707;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3078,354,0 chrIV 117860 . C T 2949 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.20;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2982,336,0 chrIV 117890 . C T 1995 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.6594;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=18.64;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,103:107:99:2028,225,0 chrIV 117891 . T C 1932 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=18.76;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1965,225,0 chrIV 120174 . A G 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=141;Dels=0.00;FS=3.167;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.970;QD=22.50;ReadPosRankSum=1.708;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3206,360,0 chrIV 121089 . C T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.44;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3389,381,0 chrIV 121098 . A G 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=4.299;HaplotypeScore=5.9117;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.117;QD=22.35;ReadPosRankSum=1.709;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3330,375,0 chrIV 121593 . G A 2734 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.03;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2767,312,0 chrIV 121624 . T C 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=157;Dels=0.00;FS=3.153;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.598;QD=21.97;ReadPosRankSum=1.710;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3449,390,0 chrIV 121990 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.5076;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.27;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2373,261,0 chrIV 122142 . T C 2507 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.59;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2540,285,0 chrIV 122163 . C T 3089 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.1454;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.23;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3122,336,0 chrIV 122524 . G A 3948.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.50;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3948,447,0 chrIV 122546 . G A 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.953;DP=160;Dels=0.00;FS=3.233;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=1.039;QD=22.54;ReadPosRankSum=0.779;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3607,386,0 chrIV 122569 . A G 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=0.658;QD=22.18;ReadPosRankSum=1.535;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3504,393,0 chrIV 122596 . A G 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-1.732;QD=20.06;ReadPosRankSum=1.710;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,156:160:99:3242,360,0 chrIV 122629 . C T 3395.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.62;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3395,372,0 chrIV 122656 . T C 3979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=190;Dels=0.00;FS=5.972;HaplotypeScore=9.2894;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-1.598;QD=20.94;ReadPosRankSum=2.942;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:3,187:190:99:3979,456,0 chrIV 122724 . G A 6007.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=13.4574;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.74;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:6007,652,0 chrIV 123526 . G A 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.203;QD=23.08;ReadPosRankSum=1.302;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3347,369,0 chrIV 123745 . A G 764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.646;DP=40;Dels=0.00;FS=8.239;HaplotypeScore=3.9697;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.386;QD=19.10;ReadPosRankSum=-0.433;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:71:797,71,0 chrIV 124765 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.177;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=19.4300;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=1.699;QD=17.46;ReadPosRankSum=2.427;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:2,214:219:99:3824,438,0 chrIV 125130 . T C 3667.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3667,414,0 chrIV 125291 . T C 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=3.372;HaplotypeScore=15.6500;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.316;QD=20.28;ReadPosRankSum=1.686;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3116,354,0 chrIV 125431 . T A 2277 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.54;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2310,261,0 chrIV 125547 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.84;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3648,387,0 chrIV 126408 . G A 1682 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.77;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1715,189,0 chrIV 126469 . G A 2508 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.08;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2541,276,0 chrIV 127263 . C T 2516 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.32;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2549,279,0 chrIV 127476 . T C 3877.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3513;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3877,456,0 chrIV 128364 . T A 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=175;Dels=0.00;FS=7.479;HaplotypeScore=15.1130;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.593;QD=23.34;ReadPosRankSum=2.364;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4084,453,0 chrIV 130517 . G T 2977 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.82;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3010,327,0 chrIV 130640 . G A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.83;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3252,363,0 chrIV 130711 . G A 2440 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.59;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2473,273,0 chrIV 130869 . C A 2722 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.87;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2755,297,0 chrIV 130934 . T G 2707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.115;QD=22.56;ReadPosRankSum=-0.837;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2740,321,0 chrIV 130967 . C A 2696 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.66;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2729,297,0 chrIV 131075 . C T 3037 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.83;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3070,342,0 chrIV 131512 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.614;QD=22.66;ReadPosRankSum=1.661;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3331,381,0 chrIV 131810 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=146;Dels=0.00;FS=3.568;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.430;QD=23.15;ReadPosRankSum=-0.209;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:1,141:146:99:3380,378,0 chrIV 131909 . G A 4801.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.27;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4801,519,0 chrIV 131941 . G C 3931.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.42;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3931,450,0 chrIV 132076 . A G 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=161;Dels=0.00;FS=2.905;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.021;QD=21.95;ReadPosRankSum=2.388;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3534,399,0 chrIV 132259 . G A 2929 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.4968;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.62;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2962,318,0 chrIV 132551 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=19.67;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2472,270,0 chrIV 132560 . G A 2727 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.20;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2760,312,0 chrIV 132656 . G A 3151 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.83;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3184,363,0 chrIV 132802 . G A 2942 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.8986;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.36;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2975,330,0 chrIV 132931 . T C 3148 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.65;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3181,363,0 chrIV 132990 . G A 3311.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3311,360,0 chrIV 134051 . T C 5732.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=10.9527;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=9;MQRankSum=-1.603;QD=22.93;ReadPosRankSum=1.718;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,249:250:99:5732,645,0 chrIV 134270 . T C 242.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.190;DP=341;Dels=0.00;FS=506.950;HaplotypeScore=18.6949;MLEAC=1;MLEAF=0.500;MQ=42.83;MQ0=22;MQRankSum=-13.616;QD=0.71;ReadPosRankSum=0.598;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:237,104:341:99:272,0,3981 chrIV 134634 . C T 4988.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=21.1850;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.97;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4988,546,0 chrIV 134868 . G A 5325.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5325,568,0 chrIV 135918 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2974,330,0 chrIV 136434 . C G 6693.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=20.98;SB=-3.321e+03 GT:AD:DP:GQ:PL 1/1:0,315:319:99:6693,753,0 chrIV 136446 . G T 6869.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=13.1491;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.27;SB=-3.344e+03 GT:AD:DP:GQ:PL 1/1:0,323:323:99:6869,751,0 chrIV 136516 . C G 5391.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=14.4610;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.06;SB=-2.888e+03 GT:AD:DP:GQ:PL 1/1:0,251:256:99:5391,609,0 chrIV 136940 . A G 2397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.678;QD=20.66;ReadPosRankSum=1.612;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2430,276,0 chrIV 136987 . G A 2421 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2454,276,0 chrIV 137047 . G A 2648 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2681,303,0 chrIV 137153 . C T 3405.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3405,369,0 chrIV 137385 . A G 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=146;Dels=0.00;FS=2.900;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.862;QD=21.35;ReadPosRankSum=2.381;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:2,142:146:99:3150,351,0 chrIV 138066 . A C 3435.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.8490;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.37;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3435,396,0 chrIV 139681 . C A 2721 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.9182;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.94;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2754,312,0 chrIV 140094 . G A 5224.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=17.7501;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.12;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5224,579,0 chrIV 140529 . T C 5051.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.35;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5051,585,0 chrIV 140808 . T C 3787.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.42;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3787,444,0 chrIV 140835 . A C 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=199;Dels=0.00;FS=2.814;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.611;QD=17.92;ReadPosRankSum=2.388;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:3567,417,0 chrIV 140862 . C T 3640.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.7956;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=18.86;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3640,402,0 chrIV 140967 . T C 2428 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.07;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2461,288,0 chrIV 141734 . T C 3320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.065;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.195;QD=20.49;ReadPosRankSum=1.667;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3320,387,0 chrIV 141736 . G C 3437.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=21.09;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3437,387,0 chrIV 141791 . T G 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7687;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.815;QD=16.69;ReadPosRankSum=1.681;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2320,261,0 chrIV 141806 . G A 2524 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=18.29;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2557,285,0 chrIV 142603 . T C 5064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.2894;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=0.413;QD=23.34;ReadPosRankSum=2.427;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:5064,567,0 chrIV 142657 . A G 4883.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.48;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4883,555,0 chrIV 142744 . A G 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=5.2839;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;MQRankSum=0.317;QD=19.05;ReadPosRankSum=1.716;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4057,477,0 chrIV 142756 . A G 4300.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;QD=18.86;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4300,489,0 chrIV 142762 . A G 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=216;Dels=0.00;FS=2.826;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;MQRankSum=-1.033;QD=17.81;ReadPosRankSum=2.427;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:3846,444,0 chrIV 142768 . G T 3901.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=4.1884;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=17.03;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:3901,435,0 chrIV 142826 . T C 4063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=220;Dels=0.00;FS=8.292;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-1.646;QD=18.47;ReadPosRankSum=0.631;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:4063,442,0 chrIV 142849 . C A 4151.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.31;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4151,459,0 chrIV 142947 . T C 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.279;QD=21.96;ReadPosRankSum=1.695;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:4128,474,0 chrIV 145686 . A G 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.087;DP=156;Dels=0.00;FS=2.587;HaplotypeScore=4.2976;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.103;QD=19.96;ReadPosRankSum=2.180;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3147,360,0 chrIV 145687 . T G 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.2976;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.574;QD=20.73;ReadPosRankSum=2.272;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3225,360,0 chrIV 145805 . T A 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.8592;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.380;QD=24.40;ReadPosRankSum=1.705;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3181,345,0 chrIV 146231 . T A 6269.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=17.0859;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.00;SB=-2.875e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:6269,696,0 chrIV 146432 . T C 4863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=218;Dels=0.00;FS=3.029;HaplotypeScore=13.4847;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.063;QD=22.31;ReadPosRankSum=2.427;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:2,214:218:99:4863,552,0 chrIV 146675 . A C 4415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.099;DP=222;Dels=0.00;FS=9.116;HaplotypeScore=17.7775;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.577;QD=19.89;ReadPosRankSum=3.421;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:4,218:222:99:4415,501,0 chrIV 146729 . A G 4796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=18.3595;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.396;QD=20.07;ReadPosRankSum=1.703;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:1,235:239:99:4796,558,0 chrIV 146789 . A G 5779.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=14.0067;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.49;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:5779,660,0 chrIV 147044 . G A 5453.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.0643;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.61;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5453,594,0 chrIV 147275 . A G 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=180;Dels=0.00;FS=6.092;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.402;QD=15.20;ReadPosRankSum=2.928;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:2769,315,0 chrIV 147276 . A G 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=178;Dels=0.00;FS=6.095;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-1.665;QD=15.78;ReadPosRankSum=2.938;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:3,174:178:99:2842,321,0 chrIV 147362 . C T 4356.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.5107;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=20.17;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,212:216:99:4356,471,0 chrIV 147373 . A G 4001.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=213;Dels=0.00;FS=3.790;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;MQRankSum=-0.089;QD=18.78;ReadPosRankSum=1.700;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4001,453,0 chrIV 147374 . A G 4014.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.419;DP=211;Dels=0.00;FS=15.285;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=-1.375;QD=19.02;ReadPosRankSum=3.394;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:4,206:211:99:4014,447,0 chrIV 147377 . T C 3835.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;MQRankSum=-1.544;QD=17.35;ReadPosRankSum=1.716;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:3835,438,0 chrIV 147467 . G A 5173.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=15.4397;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=24.06;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:5173,561,0 chrIV 147770 . T C 4474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=201;Dels=0.00;FS=2.993;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.826;QD=22.26;ReadPosRankSum=2.401;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4474,519,0 chrIV 147986 . T C 4142.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.50;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4142,477,0 chrIV 148010 . T G 4252.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.304;DP=212;Dels=0.00;FS=8.366;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.037;QD=20.06;ReadPosRankSum=3.361;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:4,208:212:99:4252,489,0 chrIV 148196 . T C 6243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=271;Dels=0.00;FS=5.591;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.196;QD=23.04;ReadPosRankSum=2.952;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:3,268:271:99:6243,720,0 chrIV 148274 . T C 5224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=265;Dels=0.00;FS=4.271;HaplotypeScore=15.6385;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.608;QD=19.71;ReadPosRankSum=1.719;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:1,261:265:99:5224,611,0 chrIV 148598 . A T 6329.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=20.82;SB=-3.603e+03 GT:AD:DP:GQ:PL 1/1:0,304:304:99:6329,714,0 chrIV 148745 . C T 6370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=283;Dels=0.00;FS=4.058;HaplotypeScore=14.8988;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.408;QD=22.51;ReadPosRankSum=1.237;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:1,281:283:99:6370,717,0 chrIV 148986 . T C 1998 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=18.85;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,101:106:99:2031,234,0 chrIV 149500 . A G 6349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=297;Dels=0.00;FS=9.667;HaplotypeScore=18.8422;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.364;QD=21.38;ReadPosRankSum=2.942;SB=-3.409e+03 GT:AD:DP:GQ:PL 1/1:3,292:297:99:6349,729,0 chrIV 149608 . G A 9292.01 filter AC=2;AF=1.00;AN=2;DP=421;Dels=0.00;FS=0.000;HaplotypeScore=18.5022;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=22.07;SB=-3.689e+03 GT:AD:DP:GQ:PL 1/1:0,421:421:99:9292,1068,0 chrIV 149689 . T C 7649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=356;Dels=0.00;FS=2.904;HaplotypeScore=29.1425;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.764;QD=21.49;ReadPosRankSum=2.374;SB=-3.748e+03 GT:AD:DP:GQ:PL 1/1:2,353:356:99:7649,882,0 chrIV 149971 . C T 5965.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=17.2647;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.17;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,266:269:99:5965,666,0 chrIV 150172 . A G 6623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=15.5441;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.600;QD=21.50;ReadPosRankSum=1.721;SB=-3.640e+03 GT:AD:DP:GQ:PL 1/1:1,305:308:99:6623,770,0 chrIV 150223 . A G 7298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=354;Dels=0.00;FS=2.935;HaplotypeScore=24.6303;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.366;QD=20.62;ReadPosRankSum=2.366;SB=-3.605e+03 GT:AD:DP:GQ:PL 1/1:2,350:354:99:7298,834,0 chrIV 150307 . A G 5928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=22.3007;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.356;QD=20.09;ReadPosRankSum=2.433;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:2,291:295:99:5928,678,0 chrIV 150382 . G C 5288.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=17.8796;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.42;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,255:259:99:5288,609,0 chrIV 150565 . T C 4522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.608;QD=22.95;ReadPosRankSum=1.679;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4522,519,0 chrIV 150634 . G A 3464.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3464,372,0 chrIV 150838 . T C 3019 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=18.1629;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3052,342,0 chrIV 150871 . C T 3155 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3188,354,0 chrIV 151903 . A G 4278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=3.784;HaplotypeScore=9.8450;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.379;QD=21.72;ReadPosRankSum=1.714;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4278,477,0 chrIV 152269 . C T 4409.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=18.3811;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.16;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4409,489,0 chrIV 155169 . T C 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.7629;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.396;QD=22.26;ReadPosRankSum=1.705;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2860,330,0 chrIV 155368 . C A 4371.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.42;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4371,498,0 chrIV 155900 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=25.34;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2618,294,0 chrIV 156407 . T C 2466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.451;QD=22.22;ReadPosRankSum=1.701;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2499,288,0 chrIV 156473 . T C 2974 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.70;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3007,345,0 chrIV 156591 . G A 4062.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4062,456,0 chrIV 157424 . T C 2758 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2791,330,0 chrIV 157600 . T A 2579 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.23;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2612,294,0 chrIV 157757 . C T 2765 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.85;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2798,309,0 chrIV 158056 . A G 3153 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.68;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3186,366,0 chrIV 158087 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.9670;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.14;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2933,342,0 chrIV 158137 . G A 2732 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.2851;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.21;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2765,297,0 chrIV 158474 . T C 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=179;Dels=0.00;FS=11.289;HaplotypeScore=14.3778;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.847;QD=19.96;ReadPosRankSum=2.938;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:3,174:179:99:3572,405,0 chrIV 158505 . T A 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-0.266;QD=21.79;ReadPosRankSum=1.711;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3551,384,0 chrIV 158510 . T C 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-1.712;QD=19.42;ReadPosRankSum=1.712;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3418,387,0 chrIV 158749 . C T 5078.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.1748;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=24.77;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:5078,564,0 chrIV 158966 . T C 2784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=148;Dels=0.00;FS=7.480;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.463;QD=18.81;ReadPosRankSum=2.416;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:2817,321,0 chrIV 158981 . A C 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.0992;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.688;QD=17.79;ReadPosRankSum=1.681;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2470,282,0 chrIV 159017 . A G 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.6336;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.131;QD=18.33;ReadPosRankSum=1.680;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2471,276,0 chrIV 159190 . A G 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.866;QD=22.53;ReadPosRankSum=1.672;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2646,309,0 chrIV 159238 . C A 2398 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=22.20;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2431,273,0 chrIV 159284 . A C 2394 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.80;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2427,279,0 chrIV 159315 . G A 3087 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.37;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3120,351,0 chrIV 159369 . T A 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.341;QD=22.94;ReadPosRankSum=1.628;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3084,333,0 chrIV 159431 . G C 2100 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=97.8926;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.58;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2133,243,0 chrIV 159513 . T C 3728.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.32;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3728,429,0 chrIV 159602 . C G 3974.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.81;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,186:191:99:3974,456,0 chrIV 159954 . T C 5285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=241;Dels=0.00;FS=7.324;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.525;QD=21.93;ReadPosRankSum=2.307;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:2,239:241:99:5285,618,0 chrIV 160513 . G C 2435 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.12;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2468,276,0 chrIV 160523 . A G 2440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.123;QD=19.06;ReadPosRankSum=1.650;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2473,279,0 chrIV 160642 . G A 2843 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.90;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2876,327,0 chrIV 161006 . T C 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=1.071;QD=18.93;ReadPosRankSum=2.416;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2835,321,0 chrIV 161007 . T C 2706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-0.211;QD=18.28;ReadPosRankSum=1.709;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2739,318,0 chrIV 161421 . C T 5490.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.36;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:5490,621,0 chrIV 161584 . T C 2841 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2874,333,0 chrIV 162414 . G A 5082.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.67;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5082,558,0 chrIV 162718 . A T 3695.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.0976;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.39;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3695,399,0 chrIV 162819 . T C 4903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=218;Dels=0.00;FS=2.978;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.177;QD=22.49;ReadPosRankSum=2.404;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4903,564,0 chrIV 162933 . G A 5600.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.86;SB=-2.858e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5600,615,0 chrIV 163031 . T C 4593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=229;Dels=0.00;FS=3.432;HaplotypeScore=13.5741;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.374;QD=20.06;ReadPosRankSum=1.686;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:4593,516,0 chrIV 163085 . C T 4197.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.0830;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.52;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4197,471,0 chrIV 163327 . C A 3055 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=120.6024;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.97;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3088,351,0 chrIV 163443 . G C 5261.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=19.2645;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.58;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,227:233:99:5261,612,0 chrIV 163644 . G A 8526.01 filter AC=2;AF=1.00;AN=2;DP=404;Dels=0.00;FS=0.000;HaplotypeScore=14.0443;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.10;SB=-4.784e+03 GT:AD:DP:GQ:PL 1/1:0,402:404:99:8526,969,0 chrIV 163695 . A G 7552.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=374;Dels=0.00;FS=5.726;HaplotypeScore=28.6792;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.814;QD=20.19;ReadPosRankSum=2.900;SB=-4.173e+03 GT:AD:DP:GQ:PL 1/1:3,369:374:99:7552,846,0 chrIV 163809 . A G 5731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.334;DP=302;Dels=0.00;FS=5.014;HaplotypeScore=25.8774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.396;QD=18.98;ReadPosRankSum=3.375;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:4,297:302:99:5731,654,0 chrIV 163896 . G A 5027.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.6681;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5027,549,0 chrIV 163967 . A G 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=176;Dels=0.00;FS=2.897;HaplotypeScore=17.9405;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.277;QD=19.88;ReadPosRankSum=2.421;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:2,171:176:99:3498,402,0 chrIV 165233 . G A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.8865;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.53;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3833,441,0 chrIV 165265 . A G 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.0755;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.904;QD=21.58;ReadPosRankSum=1.710;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3432,396,0 chrIV 165386 . T C 2882 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.4322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2915,330,0 chrIV 165563 . C T 2238 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.35;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2271,255,0 chrIV 165740 . T C 2817 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.84;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2850,327,0 chrIV 166025 . T C 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.6061;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.112;QD=22.01;ReadPosRankSum=0.259;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2983,311,0 chrIV 166634 . T C 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.155;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.396;QD=22.31;ReadPosRankSum=1.709;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3436,396,0 chrIV 169248 . C T 2573 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6996;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.23;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2606,279,0 chrIV 169360 . A T 2586 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2619,285,0 chrIV 169541 . G A 3031 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.79;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3064,333,0 chrIV 170698 . G A 5077.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=24.6704;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=18.13;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:5077,579,0 chrIV 172151 . A T 3467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=4.680;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.135;QD=24.42;ReadPosRankSum=1.658;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3467,387,0 chrIV 172218 . T C 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.166;DP=138;Dels=0.00;FS=5.281;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.032;QD=22.44;ReadPosRankSum=3.331;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:4,134:138:99:3130,360,0 chrIV 172513 . C T 4190.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.0233;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.54;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4190,456,0 chrIV 172966 . G A 4299.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=17.9968;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.77;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4299,486,0 chrIV 173380 . C T 3226.07 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3259,357,0 chrIV 173563 . T C 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.556;DP=173;Dels=0.00;FS=11.878;HaplotypeScore=16.1365;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.140;QD=22.69;ReadPosRankSum=3.774;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:5,168:173:99:3925,459,0 chrIV 173776 . C T 3960.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.16;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3960,423,0 chrIV 173795 . A G 3749.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.94;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3749,429,0 chrIV 174369 . C T 3478.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.7742;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.88;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3478,375,0 chrIV 174857 . G A 2662 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.88;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2695,291,0 chrIV 174995 . T C 1736 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.114;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.6422;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=-0.901;QD=17.54;ReadPosRankSum=2.323;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:2,95:99:99:1769,201,0 chrIV 174996 . T C 1717 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.038;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.8535;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=-1.104;QD=17.52;ReadPosRankSum=2.297;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:2,95:98:99:1750,201,0 chrIV 174998 . G T 1805 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=4.1659;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=18.23;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1838,201,0 chrIV 175067 . G A 2036 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=14.4892;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=15.54;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2069,225,0 chrIV 175406 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3116,348,0 chrIV 175731 . A C 5292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=237;Dels=0.00;FS=6.061;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.911;QD=22.33;ReadPosRankSum=2.945;SB=-2.969e+03 GT:AD:DP:GQ:PL 1/1:3,233:237:99:5292,606,0 chrIV 175931 . T C 4778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.257;DP=215;Dels=0.00;FS=12.579;HaplotypeScore=12.6873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.454;QD=22.22;ReadPosRankSum=3.379;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:4,211:215:99:4778,549,0 chrIV 175994 . A G 5450.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.90;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5450,609,0 chrIV 176019 . A G 5666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.791;DP=260;Dels=0.00;FS=39.591;HaplotypeScore=21.3043;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.176;QD=21.79;ReadPosRankSum=4.444;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:9,251:260:99:5666,645,0 chrIV 176273 . C T 6493.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=15.3339;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.55;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,287:288:99:6493,738,0 chrIV 176423 . T C 4309.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.72;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,204:208:99:4309,492,0 chrIV 176496 . A G 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.636;QD=19.20;ReadPosRankSum=2.335;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3303,387,0 chrIV 176519 . T C 3728.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.15;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3728,420,0 chrIV 176607 . C T 2311 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.9652;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.20;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2344,261,0 chrIV 176628 . C T 2081 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.68;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2114,234,0 chrIV 176919 . T C 4592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=208;Dels=0.00;FS=2.466;HaplotypeScore=11.9813;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.461;QD=22.08;ReadPosRankSum=2.859;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:4592,540,0 chrIV 177160 . T C 4696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.287;DP=233;Dels=0.00;FS=14.872;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.434;QD=20.15;ReadPosRankSum=3.174;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:4,227:233:99:4696,540,0 chrIV 177363 . A G 4181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=186;Dels=0.00;FS=5.569;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.189;QD=22.48;ReadPosRankSum=2.843;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:4181,471,0 chrIV 177780 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.00;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3300,375,0 chrIV 177807 . C T 3490.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.15;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3490,384,0 chrIV 178001 . A G 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=125;Dels=0.00;FS=2.998;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.545;QD=21.39;ReadPosRankSum=2.410;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2707,318,0 chrIV 178389 . G A 3860.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.54;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3860,420,0 chrIV 178903 . T C 5014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=228;Dels=0.00;FS=5.934;HaplotypeScore=9.4304;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.432;QD=21.99;ReadPosRankSum=2.943;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:3,225:228:99:5014,579,0 chrIV 178930 . G A 4706.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.59;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4706,534,0 chrIV 179105 . C A 3641.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.3926;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.42;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3641,402,0 chrIV 179204 . G C 3074 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.60;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3107,348,0 chrIV 179328 . G C 2265 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.6554;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.78;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2298,261,0 chrIV 179487 . C G 2656 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=9.6307;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.32;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2689,306,0 chrIV 179632 . C T 2808 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.60;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2841,312,0 chrIV 179714 . A C 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=134;Dels=0.00;FS=2.944;HaplotypeScore=9.4847;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.388;QD=21.32;ReadPosRankSum=2.375;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:2,130:134:99:2890,324,0 chrIV 179755 . G A 3215.99 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.65;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3249,351,0 chrIV 179806 . C T 3643.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3643,396,0 chrIV 180010 . C T 3308.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.4557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3308,372,0 chrIV 180644 . A C 4704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.0331;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.343;QD=23.17;ReadPosRankSum=1.681;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4704,534,0 chrIV 180937 . G A 2369 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.78;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2402,261,0 chrIV 181049 . G A 2245 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.23;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2278,249,0 chrIV 182310 . A T 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=144;Dels=0.00;FS=3.041;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.884;QD=23.01;ReadPosRankSum=1.708;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3313,357,0 chrIV 183645 . C T 4576.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=16.0391;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.96;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4576,510,0 chrIV 183720 . G A 4297.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=18.85;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4297,471,0 chrIV 183726 . G A 4285.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=18.71;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4285,492,0 chrIV 183759 . G T 4292.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=17.96;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:4292,480,0 chrIV 183768 . A G 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=235;Dels=0.00;FS=7.803;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;MQRankSum=-0.225;QD=16.09;ReadPosRankSum=2.397;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:2,233:235:99:3781,444,0 chrIV 183975 . C T 4575.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.1754;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=21.89;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4575,507,0 chrIV 184221 . A G 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.4610;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.365;QD=22.93;ReadPosRankSum=1.706;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:3105,357,0 chrIV 184320 . A G 2841 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2874,330,0 chrIV 184893 . C T 3868.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.4705;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3868,423,0 chrIV 185428 . C T 3709.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=17.9293;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.56;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3709,414,0 chrIV 185567 . C T 3918.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.9885;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.52;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3918,444,0 chrIV 185683 . T C 4062.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.3396;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.49;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4062,462,0 chrIV 185746 . C T 2890 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.9791;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.23;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2923,327,0 chrIV 185908 . G A 1994 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.16;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2027,225,0 chrIV 186151 . T C 2211 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.47;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2244,255,0 chrIV 186841 . C T 2743 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.86;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2776,309,0 chrIV 187299 . G A 4298.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4298,468,0 chrIV 188774 . C T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.04;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3295,372,0 chrIV 188907 . G A 2683 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.55;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2716,303,0 chrIV 189144 . C T 1835 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.11;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1868,210,0 chrIV 189502 . C T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.6949;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.37;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3622,399,0 chrIV 189732 . G A 4258.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.0554;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.18;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4258,474,0 chrIV 190116 . G C 3588.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3738;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.36;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3588,411,0 chrIV 190140 . G A 4015.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.59;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4015,450,0 chrIV 190212 . C A 4350.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.6442;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.43;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4350,486,0 chrIV 190248 . G A 3967.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.3444;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.29;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3967,435,0 chrIV 190764 . T C 3479.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=22.16;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3479,396,0 chrIV 190810 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3082,345,0 chrIV 191112 . A G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=2.941;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.193;QD=22.63;ReadPosRankSum=2.353;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3462,399,0 chrIV 191167 . C G 3361.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.0369;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3361,384,0 chrIV 191355 . G A 1812 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1845,207,0 chrIV 191457 . G A 2297 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2330,252,0 chrIV 192018 . G A 3030 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.80;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3063,345,0 chrIV 192069 . T C 3083 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.34;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3116,354,0 chrIV 192278 . G C 2898 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=21.95;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2931,336,0 chrIV 192297 . C T 2181 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=21.81;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2214,240,0 chrIV 192316 . T A 1907 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=19.07;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1940,216,0 chrIV 192324 . A G 1698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=-0.456;QD=17.69;ReadPosRankSum=1.659;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1731,195,0 chrIV 192451 . G A 2369 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.3020;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.42;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2402,273,0 chrIV 192839 . C T 2306 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=25.91;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2339,255,0 chrIV 192855 . T C 2221 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.90;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2254,255,0 chrIV 193034 . C T 3211.99 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=21.85;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3245,360,0 chrIV 193043 . A G 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=155;Dels=0.00;FS=3.396;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=-1.053;QD=19.75;ReadPosRankSum=1.709;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3095,354,0 chrIV 193118 . A G 3697.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.4295;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=20.54;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3697,417,0 chrIV 193121 . C T 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.102;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=0.491;QD=19.63;ReadPosRankSum=0.806;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:3691,393,0 chrIV 193154 . T C 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-1.132;QD=19.07;ReadPosRankSum=1.693;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:1,178:182:99:3470,399,0 chrIV 193175 . C T 2778 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=17.04;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2811,312,0 chrIV 193207 . C T 2939 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=18.25;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2972,330,0 chrIV 193229 . C T 2889 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=16.60;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:2922,330,0 chrIV 193242 . T C 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.618;DP=190;Dels=0.00;FS=11.885;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;MQRankSum=-2.472;QD=15.28;ReadPosRankSum=3.791;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:5,185:190:99:2936,324,0 chrIV 193254 . A G 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=213;Dels=0.00;FS=6.596;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;MQRankSum=-1.414;QD=16.13;ReadPosRankSum=2.426;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:2,209:213:99:3435,399,0 chrIV 193723 . G A 3647.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4777;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.81;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3647,399,0 chrIV 194241 . T C 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.4213;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-1.732;QD=20.54;ReadPosRankSum=1.687;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,152:156:99:3238,372,0 chrIV 194352 . A C 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.947;HaplotypeScore=3.3832;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=0.982;QD=18.15;ReadPosRankSum=1.499;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2465,282,0 chrIV 194353 . G A 2584 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=3.3832;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=19.14;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2617,291,0 chrIV 195160 . G A 4220.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.5955;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.87;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4220,486,0 chrIV 195231 . A T 5838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=236;Dels=0.00;FS=10.318;HaplotypeScore=13.1908;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.355;QD=24.74;ReadPosRankSum=2.910;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:3,233:236:99:5838,636,0 chrIV 195366 . C T 4955.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.7749;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4955,537,0 chrIV 196482 . A G 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.504;HaplotypeScore=5.8839;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.074;QD=22.27;ReadPosRankSum=1.703;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2728,309,0 chrIV 196851 . A G 4576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=214;Dels=0.00;FS=5.968;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.531;QD=21.38;ReadPosRankSum=2.920;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:3,211:214:99:4576,516,0 chrIV 197082 . A G 4501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.696;QD=23.08;ReadPosRankSum=1.679;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4501,513,0 chrIV 197151 . C A 4031.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.0247;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.65;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4031,447,0 chrIV 197364 . G C 3867.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.72;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3867,447,0 chrIV 198656 . T C 5507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=238;Dels=0.00;FS=2.887;HaplotypeScore=17.2130;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.347;QD=23.14;ReadPosRankSum=2.429;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:2,235:238:99:5507,630,0 chrIV 198734 . T C 5049.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.27;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5049,576,0 chrIV 199393 . G A 6330.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=19.4544;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.61;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:6330,682,0 chrIV 199455 . A G 5803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.663;DP=282;Dels=0.00;FS=7.947;HaplotypeScore=20.2649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.660;QD=20.58;ReadPosRankSum=3.801;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:5,277:282:99:5803,663,0 chrIV 199937 . A G 5530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=242;Dels=0.00;FS=4.278;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.913;QD=22.85;ReadPosRankSum=1.703;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:1,240:242:99:5530,633,0 chrIV 200829 . T C 3947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.149;DP=176;Dels=0.00;FS=10.055;HaplotypeScore=12.9082;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.042;QD=22.43;ReadPosRankSum=4.449;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:7,166:176:99:3947,444,0 chrIV 204006 . G A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3417,366,0 chrIV 204805 . G A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.59;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3609,390,0 chrIV 204971 . G A 2101 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.7054;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=14.80;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2134,228,0 chrIV 205908 . T G 9511.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.227;DP=514;Dels=0.00;FS=24.446;HaplotypeScore=47.9671;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-2.090;QD=18.50;ReadPosRankSum=3.336;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:4,507:514:99:9511,1068,0 chrIV 206332 . A G 3937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=208;Dels=0.00;FS=5.479;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=2.464;QD=18.93;ReadPosRankSum=2.918;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:3,205:208:99:3937,453,0 chrIV 207739 . T C 4068.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.7224;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4068,462,0 chrIV 209110 . A C 4048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=181;Dels=0.00;FS=3.028;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;MQRankSum=-0.726;QD=22.36;ReadPosRankSum=2.382;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4048,453,0 chrIV 210373 . A G 4696.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4696,537,0 chrIV 211275 . G A 952 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=17.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:985,111,0 chrIV 211301 . C T 741 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:37:84:774,84,0 chrIV 212616 . T C 1237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=4.6059;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.602;QD=22.91;ReadPosRankSum=1.667;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1270,147,0 chrIV 212832 . A G 1871 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.56;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1904,219,0 chrIV 213112 . A G 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.02;FS=3.540;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=1.107;QD=21.02;ReadPosRankSum=1.704;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2682,312,0 chrIV 213539 . C T 4680.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.2432;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.72;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4680,516,0 chrIV 213698 . C T 4081.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.8622;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.82;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4081,459,0 chrIV 214858 . C T 4540.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.6187;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4540,489,0 chrIV 214909 . C T 4012.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.76;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4012,456,0 chrIV 215531 . T C 3977.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.09;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3977,456,0 chrIV 215967 . G C 4154.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.07;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4154,480,0 chrIV 216867 . A G 5047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=233;Dels=0.00;FS=2.990;HaplotypeScore=16.5559;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.931;QD=21.66;ReadPosRankSum=2.418;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:2,230:233:99:5047,573,0 chrIV 217405 . C T 2945 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.9800;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=23.01;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2978,321,0 chrIV 217435 . A T 2160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=123;Dels=0.00;FS=3.046;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-0.550;QD=17.56;ReadPosRankSum=2.410;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2193,237,0 chrIV 217447 . G A 2043 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=17.61;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2076,234,0 chrIV 217557 . G A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.69;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3336,357,0 chrIV 217882 . T C 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.638;DP=114;Dels=0.00;FS=10.367;HaplotypeScore=23.3619;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=2.301;QD=22.71;ReadPosRankSum=2.939;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2622,294,0 chrIV 217962 . T C 2114 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.3470;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=22.49;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2147,249,0 chrIV 218072 . A G 3502.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=160;Dels=0.00;FS=4.685;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=42.88;MQ0=8;MQRankSum=-0.647;QD=21.89;ReadPosRankSum=1.709;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:6,152:160:99:3502,399,0 chrIV 218572 . A T 2232 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2265,246,0 chrIV 218923 . T C 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=4.805;HaplotypeScore=9.4275;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.599;QD=21.15;ReadPosRankSum=1.705;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2783,330,0 chrIV 219115 . T G 2055 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.63;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2088,237,0 chrIV 219175 . G A 2101 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.4386;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.80;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2134,237,0 chrIV 219340 . C A 3020 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.97;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3053,327,0 chrIV 219690 . C T 4891.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.46;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4891,537,0 chrIV 220442 . C T 5612.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=19.1692;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=22.36;SB=-3.043e+03 GT:AD:DP:GQ:PL 1/1:0,247:251:99:5612,636,0 chrIV 220735 . C T 3401.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.6534;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=21.53;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3401,384,0 chrIV 222520 . G A 2560 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2593,288,0 chrIV 223943 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2570,285,0 chrIV 224112 . C T 3348.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=15.1697;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.19;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3348,366,0 chrIV 224651 . C T 4085.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4085,441,0 chrIV 224806 . C G 3578.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3578,420,0 chrIV 224854 . G A 4271.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.41;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:4271,459,0 chrIV 227035 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4838;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.34;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3334,399,0 chrIV 227127 . A G 3347.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.88;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3347,384,0 chrIV 228268 . C T 212.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.953;DP=284;Dels=0.00;FS=445.699;HaplotypeScore=15.8171;MLEAC=1;MLEAF=0.500;MQ=46.23;MQ0=20;MQRankSum=-12.301;QD=0.75;ReadPosRankSum=-0.024;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:191,93:284:99:242,0,3046 chrIV 228430 . A G 2636 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.060;DP=175;Dels=0.00;FS=21.384;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=25;MQRankSum=1.839;QD=15.06;ReadPosRankSum=3.973;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:6,168:175:99:2669,303,0 chrIV 229105 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.2855;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.23;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3256,372,0 chrIV 229193 . G T 2672 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.84;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2705,297,0 chrIV 229444 . A G 2781 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=22.61;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2814,327,0 chrIV 229448 . C T 2873 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=23.17;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2906,321,0 chrIV 229466 . C A 2819 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=22.20;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2852,318,0 chrIV 229467 . G A 2892 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=22.42;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2925,324,0 chrIV 229526 . G A 2091 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.50;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2124,231,0 chrIV 229690 . A C 2075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;MQRankSum=0.093;QD=18.53;ReadPosRankSum=1.701;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2108,240,0 chrIV 229702 . T C 1902 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=89.0304;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=17.61;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1935,222,0 chrIV 229752 . G T 2364 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=19.54;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2397,267,0 chrIV 229828 . G C 3107 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.54;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3140,354,0 chrIV 229868 . T A 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=1.061;QD=23.27;ReadPosRankSum=1.625;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3035,330,0 chrIV 230604 . C A 2021 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2054,234,0 chrIV 231086 . G A 4685.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=16.9793;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.46;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4685,502,0 chrIV 231260 . G A 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.206;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.0662;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.117;QD=20.69;ReadPosRankSum=0.637;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4013,429,0 chrIV 232181 . C T 1505 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.29;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1538,165,0 chrIV 233071 . A C 4981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=224;Dels=0.00;FS=3.026;HaplotypeScore=15.8896;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.539;QD=22.24;ReadPosRankSum=2.383;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:2,219:224:99:4981,567,0 chrIV 233208 . G A 5487.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=10.6770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5487,595,0 chrIV 234361 . T C 3501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=157;Dels=0.00;FS=4.500;HaplotypeScore=14.1536;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.704;QD=22.30;ReadPosRankSum=1.687;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3501,399,0 chrIV 235604 . T C 3021 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.7103;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.55;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3054,348,0 chrIV 235676 . A G 2874 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.13;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2907,327,0 chrIV 235896 . C T 1644 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=18.68;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1677,192,0 chrIV 235902 . C G 1673 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.18;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1706,198,0 chrIV 236074 . A G 1491 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=16.57;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1524,174,0 chrIV 236080 . T C 1372 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;MQRankSum=-0.168;QD=14.75;ReadPosRankSum=1.695;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1405,159,0 chrIV 236082 . A T 1504 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=6.114;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.074;QD=16.00;ReadPosRankSum=1.695;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1537,165,0 chrIV 236373 . G T 7297.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=14.3811;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.32;SB=-3.428e+03 GT:AD:DP:GQ:PL 1/1:0,300:300:99:7297,807,0 chrIV 236610 . A G 4756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.886;QD=21.72;ReadPosRankSum=1.684;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,216:219:99:4756,543,0 chrIV 236640 . T A 4897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=233;Dels=0.00;FS=4.984;HaplotypeScore=14.7891;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.732;QD=21.02;ReadPosRankSum=1.717;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:4897,534,0 chrIV 237441 . T G 6743.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=18.7417;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.34;SB=-3.659e+03 GT:AD:DP:GQ:PL 1/1:0,314:316:99:6743,771,0 chrIV 237522 . G A 5175.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.9188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:5175,556,0 chrIV 237570 . G A 5775.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:5775,642,0 chrIV 237897 . G A 4741.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=16.6295;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.71;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4741,516,0 chrIV 237936 . G A 5204.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=18.0703;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.05;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5204,579,0 chrIV 238371 . A C 4927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=222;Dels=0.00;FS=7.871;HaplotypeScore=6.6726;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=1.012;QD=22.19;ReadPosRankSum=2.339;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:4927,558,0 chrIV 238389 . G A 4664.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.73;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4664,528,0 chrIV 238826 . G T 3604.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.71;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3604,393,0 chrIV 238913 . T G 4460.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.8734;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.55;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4460,513,0 chrIV 239022 . A G 4131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=4.796;HaplotypeScore=8.2215;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.692;QD=23.47;ReadPosRankSum=1.692;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4131,471,0 chrIV 239462 . C T 5913.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=9.6758;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.06;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:5913,657,0 chrIV 239605 . A T 3799.01 SnpCluster AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.9360;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=19.79;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3799,411,0 chrIV 239613 . T A 3320.01 SnpCluster AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.4446;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;QD=18.86;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3320,369,0 chrIV 239615 . C A 3218.91 SnpCluster AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.4446;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=0;QD=18.19;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3252,363,0 chrIV 239632 . C T 2705 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;QD=16.39;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2738,303,0 chrIV 239643 . T C 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=170;Dels=0.00;FS=6.097;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;MQRankSum=-1.160;QD=15.32;ReadPosRankSum=2.900;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:2638,297,0 chrIV 239693 . T C 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8530;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=0.397;QD=20.43;ReadPosRankSum=1.711;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3412,384,0 chrIV 239899 . A G 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.156;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.1895;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-0.064;QD=19.63;ReadPosRankSum=-0.577;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3711,400,0 chrIV 239907 . C T 3568.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1424;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=19.29;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:3568,396,0 chrIV 239933 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=17.66;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3017,330,0 chrIV 239984 . C T 1916 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=12.13;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:1949,219,0 chrIV 239989 . C T 2115 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=14.39;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:2148,231,0 chrIV 239991 . T C 1857 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=4.919;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.34;MQ0=0;MQRankSum=-1.732;QD=12.46;ReadPosRankSum=1.709;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:1890,216,0 chrIV 240090 . T C 3599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.475;DP=175;Dels=0.00;FS=3.797;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-0.742;QD=20.57;ReadPosRankSum=1.653;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3599,411,0 chrIV 240154 . T C 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.572;DP=129;Dels=0.00;FS=1.152;HaplotypeScore=4.9301;MLEAC=1;MLEAF=0.500;MQ=47.42;MQ0=0;MQRankSum=2.372;QD=0.10;ReadPosRankSum=-5.437;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:117,12:129:43:43,0,310 chrIV 240156 . T C 362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.039;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;MQRankSum=-1.196;QD=2.81;ReadPosRankSum=4.550;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:8,119:129:29:395,29,0 chrIV 240185 . C T 3097 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=21.51;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3130,339,0 chrIV 240232 . G A 3476.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=24.48;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3476,381,0 chrIV 240258 . G A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=21.35;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,159:163:99:3480,381,0 chrIV 240282 . T C 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=161;Dels=0.00;FS=2.963;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=0.664;QD=19.55;ReadPosRankSum=2.389;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3181,363,0 chrIV 240297 . A G 3681.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.3264;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=20.01;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3681,417,0 chrIV 240375 . G C 3576.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.6166;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=20.32;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3576,411,0 chrIV 240387 . C T 3449.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=20.90;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3449,390,0 chrIV 240480 . T C 3703.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=23.44;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3703,420,0 chrIV 240506 . C A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.07;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3287,357,0 chrIV 240532 . C A 2764 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=19.46;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2797,306,0 chrIV 240544 . A G 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=156;Dels=0.00;FS=5.948;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;MQRankSum=0.461;QD=16.81;ReadPosRankSum=2.955;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:2655,303,0 chrIV 240564 . T G 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=3.697;HaplotypeScore=7.2240;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;MQRankSum=-0.275;QD=15.90;ReadPosRankSum=1.711;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:2640,306,0 chrIV 240610 . C T 3187 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=0;QD=17.51;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3220,354,0 chrIV 240612 . A G 3172 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=17.05;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3205,372,0 chrIV 240647 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=3.111;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;MQRankSum=-0.478;QD=18.47;ReadPosRankSum=1.692;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3267,369,0 chrIV 240657 . A C 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5151;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;MQRankSum=0.648;QD=18.62;ReadPosRankSum=1.693;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3333,384,0 chrIV 240804 . C T 3200 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=22.38;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3233,363,0 chrIV 240868 . G C 3463.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=22.78;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,147:152:99:3463,393,0 chrIV 241065 . A G 2877 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.83;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2910,330,0 chrIV 241166 . G A 2342 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=20.91;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2375,258,0 chrIV 241173 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=19.07;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2207,252,0 chrIV 241202 . C A 1990 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=16.58;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2023,225,0 chrIV 241206 . T C 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;MQRankSum=0.323;QD=15.60;ReadPosRankSum=1.991;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:1874,216,0 chrIV 241406 . G A 3954.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=24.41;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3954,426,0 chrIV 241544 . T C 4426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.5220;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.714;QD=22.47;ReadPosRankSum=1.714;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4426,504,0 chrIV 241816 . G A 3756.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.19;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3756,411,0 chrIV 241861 . T A 4185.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.2912;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=21.80;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4185,459,0 chrIV 241900 . T C 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=195;Dels=0.00;FS=8.939;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=-1.215;QD=21.48;ReadPosRankSum=2.412;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4189,477,0 chrIV 241945 . A G 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.223;DP=163;Dels=0.00;FS=8.766;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=-0.467;QD=16.85;ReadPosRankSum=3.384;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:4,159:163:99:2779,321,0 chrIV 241962 . G A 2053 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=14.56;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2086,225,0 chrIV 241990 . C T 1031 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=9.04;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:1064,117,0 chrIV 242001 . G C 858 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=106.0638;MLEAC=2;MLEAF=1.00;MQ=35.98;MQ0=0;QD=7.33;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:891,102,0 chrIV 242036 . C T 1157 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=0;QD=8.90;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1190,129,0 chrIV 242056 . C A 1056 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=8.87;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1089,123,0 chrIV 242073 . A T 1200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=3.083;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.36;MQ0=0;MQRankSum=1.010;QD=10.00;ReadPosRankSum=1.703;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1233,132,0 chrIV 242081 . A C 1232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=3.045;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.66;MQ0=0;MQRankSum=0.845;QD=9.86;ReadPosRankSum=1.704;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:1265,141,0 chrIV 242090 . T G 1201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=3.237;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=40.02;MQ0=0;MQRankSum=-1.497;QD=10.09;ReadPosRankSum=1.703;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:1234,141,0 chrIV 242130 . G T 1481 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=13.59;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1514,165,0 chrIV 242141 . T C 1612 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=14.93;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1645,189,0 chrIV 242176 . C T 1880 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=19.58;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1913,216,0 chrIV 242306 . A G 1668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;MQRankSum=1.368;QD=21.66;ReadPosRankSum=1.687;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1701,192,0 chrIV 242384 . A T 1028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=4.698;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=1.263;QD=17.42;ReadPosRankSum=1.674;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1061,117,0 chrIV 242968 . G T 3995.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.2886;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.07;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3995,441,0 chrIV 242997 . G A 2898 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.3856;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=16.95;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:2931,318,0 chrIV 243004 . G A 2986 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.6562;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=17.67;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3019,330,0 chrIV 243234 . A G 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=3.581;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.986;QD=23.27;ReadPosRankSum=1.705;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3082,345,0 chrIV 243367 . C T 3024 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.15;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3057,348,0 chrIV 243379 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.50;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2903,321,0 chrIV 243421 . C T 3685.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.61;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3685,393,0 chrIV 243568 . G A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.57;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3771,405,0 chrIV 243616 . C T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.36;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3271,357,0 chrIV 243815 . G T 2614 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.93;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2647,291,0 chrIV 243985 . A G 3143 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.29;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3176,369,0 chrIV 244033 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=14.9422;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.77;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2983,336,0 chrIV 244138 . T G 5132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=250;Dels=0.00;FS=2.706;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=0.763;QD=20.53;ReadPosRankSum=2.370;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:2,244:250:99:5132,582,0 chrIV 244150 . T C 4311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=234;Dels=0.00;FS=5.234;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-1.185;QD=18.42;ReadPosRankSum=2.867;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:3,231:234:99:4311,504,0 chrIV 244177 . G T 4384.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.57;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4384,498,0 chrIV 244935 . A G 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.710;DP=125;Dels=0.00;FS=2.351;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.850;QD=20.55;ReadPosRankSum=3.761;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:5,120:125:99:2602,297,0 chrIV 245902 . G A 3171 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.5255;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.82;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3204,348,0 chrIV 246213 . T C 3916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.041;QD=23.31;ReadPosRankSum=1.650;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3916,450,0 chrIV 246316 . T C 3917.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3917,444,0 chrIV 246646 . T C 2631 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.72;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2664,297,0 chrIV 246664 . T G 2773 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.69;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2806,324,0 chrIV 246743 . G C 3388.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.6728;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.29;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,163:167:99:3388,381,0 chrIV 247340 . C T 5101.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.29;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5101,550,0 chrIV 247465 . A G 4438.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4438,501,0 chrIV 248088 . G A 2266 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.9110;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.60;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2299,264,0 chrIV 248311 . T C 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=3.551;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.576;QD=22.68;ReadPosRankSum=1.670;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2596,291,0 chrIV 248350 . C T 2511 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2544,276,0 chrIV 248513 . G C 2413 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2446,279,0 chrIV 248700 . G A 2259 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2292,249,0 chrIV 249264 . C T 2965 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.98;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2998,330,0 chrIV 249372 . T C 3088 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3121,354,0 chrIV 249432 . C T 2537 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.87;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2570,285,0 chrIV 249508 . A G 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.2357;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.044;QD=22.28;ReadPosRankSum=1.689;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3609,402,0 chrIV 249666 . A G 3598.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.94;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3598,426,0 chrIV 249699 . C T 4492.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=16.1435;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.52;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4492,501,0 chrIV 250548 . T C 3170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=141;Dels=0.00;FS=2.844;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.940;QD=22.48;ReadPosRankSum=2.397;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3203,369,0 chrIV 251017 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.21;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3304,363,0 chrIV 251630 . T A 4037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.196;QD=24.03;ReadPosRankSum=1.650;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4037,453,0 chrIV 252749 . G T 5133.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.3229;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.61;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,223:227:99:5133,550,0 chrIV 252774 . T C 4169.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.83;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4169,489,0 chrIV 253388 . G A 2509 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2542,273,0 chrIV 253626 . C A 2478 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.38;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2511,276,0 chrIV 253958 . G A 2073 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.98;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2106,228,0 chrIV 254367 . G A 3707.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.7095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.07;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3707,408,0 chrIV 254813 . T G 2337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=125;Dels=0.00;FS=3.045;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.210;QD=18.70;ReadPosRankSum=2.391;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2370,279,0 chrIV 254856 . A G 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.251;DP=120;Dels=0.00;FS=13.033;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.246;QD=20.90;ReadPosRankSum=3.295;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:4,116:120:99:2541,288,0 chrIV 255235 . A G 4632.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=16.1215;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.60;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4632,525,0 chrIV 255340 . T C 4042.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4042,459,0 chrIV 255481 . G A 3126 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.70;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3159,345,0 chrIV 255671 . T C 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.216;QD=21.40;ReadPosRankSum=1.702;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2494,285,0 chrIV 255870 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.20;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3228,357,0 chrIV 256060 . G A 3181 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3214,366,0 chrIV 256213 . T C 3860.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3860,435,0 chrIV 256576 . T A 2093 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=78.6653;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=20.32;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2126,240,0 chrIV 257386 . C T 3447.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.83;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3447,378,0 chrIV 257501 . T C 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.415;QD=22.90;ReadPosRankSum=1.659;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3274,372,0 chrIV 257569 . G A 2572 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=21.08;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2605,297,0 chrIV 257584 . T C 2356 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.63;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2389,273,0 chrIV 257586 . G A 2441 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=20.51;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2474,267,0 chrIV 257704 . G T 3922.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.1871;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3922,438,0 chrIV 257770 . C T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.9228;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.69;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3553,381,0 chrIV 257974 . G A 4391.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4568;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4391,480,0 chrIV 258190 . T C 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=140;Dels=0.00;FS=3.105;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.458;QD=20.89;ReadPosRankSum=1.607;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2957,339,0 chrIV 258250 . G C 2673 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.9446;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.65;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,130:136:99:2706,309,0 chrIV 258685 . A G 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=176;Dels=0.00;FS=2.687;HaplotypeScore=12.6996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.602;QD=21.58;ReadPosRankSum=2.407;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:2,172:176:99:3798,435,0 chrIV 259011 . C T 4129.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.8678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.49;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4129,444,0 chrIV 259500 . A G 4080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.7105;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.486;QD=21.59;ReadPosRankSum=1.677;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4080,465,0 chrIV 259676 . T C 3936.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=24.00;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3936,444,0 chrIV 259881 . G C 3610.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.62;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3610,417,0 chrIV 259889 . G T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.88;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3589,399,0 chrIV 260003 . A G 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=137;Dels=0.00;FS=7.911;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.768;QD=22.36;ReadPosRankSum=2.305;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3097,354,0 chrIV 260180 . T C 2842 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.38;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2875,333,0 chrIV 260731 . T A 3301.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.46;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3301,372,0 chrIV 260778 . T C 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=136;Dels=0.00;FS=8.072;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.081;QD=20.53;ReadPosRankSum=2.395;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2825,318,0 chrIV 260870 . A C 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.760;DP=133;Dels=0.00;FS=2.979;HaplotypeScore=13.4216;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.754;QD=20.00;ReadPosRankSum=0.047;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2693,309,0 chrIV 261099 . A T 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.00;FS=3.571;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.446;QD=23.39;ReadPosRankSum=1.706;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3190,354,0 chrIV 261140 . G C 3083 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.8509;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.97;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3116,351,0 chrIV 261167 . T C 2820 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.29;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2853,324,0 chrIV 261197 . A G 2641 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7334;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=19.71;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2674,306,0 chrIV 261788 . C T 3158 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.72;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3191,354,0 chrIV 261828 . T C 2815 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.65;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2848,318,0 chrIV 262380 . C T 4081.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.45;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4081,441,0 chrIV 262409 . C G 3427.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.9714;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.29;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:3427,399,0 chrIV 263790 . G A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,151:156:99:3665,405,0 chrIV 264197 . G A 2371 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.62;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2404,273,0 chrIV 264221 . A G 2011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=101;Dels=0.00;FS=2.791;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-1.499;QD=19.91;ReadPosRankSum=2.352;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2044,234,0 chrIV 264290 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=22.74;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1966,216,0 chrIV 264299 . G T 1971 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=23.75;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2004,216,0 chrIV 264766 . C T 5508.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=12.1062;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.25;SB=-3.124e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:5508,612,0 chrIV 264942 . C T 4550.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.0582;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.77;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4550,492,0 chrIV 265052 . C A 3589.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.1570;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.62;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3589,399,0 chrIV 265774 . G C 3177 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.4584;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3210,363,0 chrIV 265807 . A G 2896 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.9359;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.31;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2929,336,0 chrIV 265841 . G A 2981 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=14.3234;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.56;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3014,330,0 chrIV 265986 . G A 4060.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.2407;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.31;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4060,435,0 chrIV 266029 . G A 4203.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.2382;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.44;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4203,456,0 chrIV 266302 . T C 3895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=186;Dels=0.00;FS=4.916;HaplotypeScore=16.7490;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.562;QD=20.94;ReadPosRankSum=1.694;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,182:186:99:3895,459,0 chrIV 266398 . A G 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=3.647;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.840;QD=22.83;ReadPosRankSum=1.680;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3047,345,0 chrIV 266544 . C A 3117 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.42;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3150,342,0 chrIV 266920 . A G 2628 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.56;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2661,297,0 chrIV 267004 . G C 4024.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=23.26;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4024,453,0 chrIV 267084 . C T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.68;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3402,375,0 chrIV 267112 . A G 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=147;Dels=0.00;FS=6.111;HaplotypeScore=7.9781;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.110;QD=21.16;ReadPosRankSum=2.416;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:3144,363,0 chrIV 267220 . A G 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=0.000;QD=18.41;ReadPosRankSum=1.689;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3016,342,0 chrIV 267224 . T A 2962 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=18.40;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2995,336,0 chrIV 267264 . T C 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=137;Dels=0.00;FS=8.300;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-1.265;QD=16.48;ReadPosRankSum=2.414;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2291,264,0 chrIV 267359 . A T 3400.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.94;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3400,375,0 chrIV 268540 . A C 3736.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.35;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3736,426,0 chrIV 268730 . T C 3363.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.0860;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.72;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3363,384,0 chrIV 269477 . A G 3140 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.92;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3173,360,0 chrIV 269772 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.66;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2943,330,0 chrIV 269895 . T C 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=133;Dels=0.00;FS=11.308;HaplotypeScore=7.2560;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-2.016;QD=23.43;ReadPosRankSum=2.871;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:3,129:133:99:3149,357,0 chrIV 270080 . T C 2436 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.82;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2469,282,0 chrIV 270285 . G A 5374.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,212:216:99:5374,574,0 chrIV 271031 . C T 2810 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:2843,315,0 chrIV 271410 . A C 4655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=209;Dels=0.00;FS=3.160;HaplotypeScore=19.7058;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.142;QD=22.27;ReadPosRankSum=1.715;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4655,534,0 chrIV 271458 . T C 4452.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.93;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4452,507,0 chrIV 271629 . C G 6769.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=16.2973;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=23.83;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,282:284:99:6769,759,0 chrIV 271659 . C T 5923.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.54;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,272:275:99:5923,657,0 chrIV 271671 . T C 5464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.032;QD=19.87;ReadPosRankSum=1.681;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:1,272:275:99:5464,624,0 chrIV 272309 . T C 4195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=205;Dels=0.00;FS=14.709;HaplotypeScore=188.5389;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-2.756;QD=20.46;ReadPosRankSum=2.945;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:3,200:205:99:4195,474,0 chrIV 272385 . A C 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.581;DP=199;Dels=0.00;FS=11.825;HaplotypeScore=18.4407;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.885;QD=20.17;ReadPosRankSum=3.810;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:5,193:199:99:4014,468,0 chrIV 272964 . T C 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=129;Dels=0.00;FS=3.324;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.437;QD=21.78;ReadPosRankSum=1.652;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2842,333,0 chrIV 273162 . G A 2429 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.88;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2462,267,0 chrIV 273222 . C T 1928 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.1593;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.66;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1961,216,0 chrIV 273273 . G A 1613 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1646,180,0 chrIV 273372 . C G 3293.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.52;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3293,387,0 chrIV 273764 . G A 1984 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.54;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2017,228,0 chrIV 274174 . A G 3159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=4.114;HaplotypeScore=9.2090;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.035;QD=21.49;ReadPosRankSum=1.709;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3192,363,0 chrIV 274301 . A G 5067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=226;Dels=0.00;FS=4.830;HaplotypeScore=10.9450;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.362;QD=22.42;ReadPosRankSum=1.717;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:5067,582,0 chrIV 274589 . T C 4227.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.2605;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.13;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4227,483,0 chrIV 274595 . G A 4137.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.08;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4137,462,0 chrIV 274672 . A G 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=148;Dels=0.00;FS=9.191;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.420;QD=20.77;ReadPosRankSum=3.281;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:4,144:148:99:3107,348,0 chrIV 274745 . A G 3112 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.72;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3145,363,0 chrIV 274809 . A G 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.185;QD=22.47;ReadPosRankSum=1.689;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3572,402,0 chrIV 274870 . A C 2718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.050;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.6089;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=1.390;QD=22.10;ReadPosRankSum=2.210;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2751,292,0 chrIV 274998 . T C 1612 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=66.3876;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.67;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1645,192,0 chrIV 275070 . T A 1693 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.04;FS=0.000;HaplotypeScore=14.9528;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.40;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1726,192,0 chrIV 275118 . T C 2274 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.03;FS=0.000;HaplotypeScore=128.9287;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=18.95;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2307,261,0 chrIV 275205 . A G 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=86;Dels=0.00;FS=5.728;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.611;QD=23.34;ReadPosRankSum=1.571;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2040,228,0 chrIV 275267 . C T 2367 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.66;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2400,264,0 chrIV 275448 . T C 3691.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.8824;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.46;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3691,432,0 chrIV 275508 . T C 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.8564;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.790;QD=21.68;ReadPosRankSum=1.299;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2982,348,0 chrIV 275637 . A G 4927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.703;DP=221;Dels=0.00;FS=12.184;HaplotypeScore=11.5739;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.412;QD=22.29;ReadPosRankSum=3.802;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:5,215:221:99:4927,561,0 chrIV 275721 . T C 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.560;QD=21.81;ReadPosRankSum=1.715;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4405,513,0 chrIV 276015 . A G 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=17.6680;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.462;QD=21.22;ReadPosRankSum=1.710;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3289,378,0 chrIV 276057 . G A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.55;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3608,390,0 chrIV 276204 . G A 3980.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.98;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3980,441,0 chrIV 276375 . T G 5171.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.72;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5171,591,0 chrIV 276677 . C A 3805.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.4829;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.62;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3805,411,0 chrIV 276969 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.71;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3496,411,0 chrIV 276996 . C T 3418.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1451;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.19;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3418,378,0 chrIV 277276 . C T 4637.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=16.0160;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.15;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4637,510,0 chrIV 278671 . C T 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.1628;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-1.520;QD=22.92;ReadPosRankSum=-1.097;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4149,456,0 chrIV 278692 . G A 3818.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.53;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:3818,438,0 chrIV 279031 . T C 3648.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.71;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3648,411,0 chrIV 279796 . C T 3908.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.40;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3908,429,0 chrIV 280173 . T C 2373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=113;Dels=0.00;FS=8.456;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-1.470;QD=21.00;ReadPosRankSum=2.406;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2406,276,0 chrIV 280191 . T C 2176 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.72;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2209,252,0 chrIV 280227 . G A 2067 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=19.50;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2100,228,0 chrIV 280697 . C T 3373.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.49;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3373,378,0 chrIV 280802 . A T 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.4071;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.702;QD=21.25;ReadPosRankSum=1.662;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3199,363,0 chrIV 280847 . G A 3517.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.5057;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.69;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3517,381,0 chrIV 280934 . G A 2838 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.89;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2871,327,0 chrIV 281102 . A G 3173 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.66;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3206,369,0 chrIV 281207 . C T 2595 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.60;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2628,297,0 chrIV 281213 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.82;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2749,300,0 chrIV 281306 . C A 3060 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=21.55;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3093,351,0 chrIV 281307 . G A 3189 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=22.30;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3222,351,0 chrIV 281327 . T C 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=-1.071;QD=18.57;ReadPosRankSum=1.687;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2856,333,0 chrIV 281351 . G A 2174 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=15.64;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2207,252,0 chrIV 281392 . T C 2420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.732;DP=140;Dels=0.00;FS=5.568;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.471;QD=17.29;ReadPosRankSum=2.950;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:3,136:140:99:2453,282,0 chrIV 281474 . A G 4081.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.1451;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.80;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4081,471,0 chrIV 281966 . T A 2803 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2836,324,0 chrIV 282024 . T A 2833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=123;Dels=0.00;FS=2.919;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.170;QD=23.03;ReadPosRankSum=2.410;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2866,309,0 chrIV 282856 . A G 7017.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=21.9430;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.95;SB=-3.739e+03 GT:AD:DP:GQ:PL 1/1:0,332:335:99:7017,804,0 chrIV 283030 . T C 7083.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=25.0081;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.79;SB=-3.035e+03 GT:AD:DP:GQ:PL 1/1:0,322:325:99:7083,804,0 chrIV 283586 . C T 3538.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.97;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3538,399,0 chrIV 283730 . A G 4162.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.0323;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=23.25;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4162,477,0 chrIV 283789 . A G 3684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-1.448;QD=20.13;ReadPosRankSum=1.713;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3684,423,0 chrIV 283794 . A C 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.4222;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-0.019;QD=19.12;ReadPosRankSum=1.713;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3575,408,0 chrIV 283814 . A G 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=159;Dels=0.00;FS=7.177;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-0.822;QD=19.99;ReadPosRankSum=2.418;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3212,369,0 chrIV 283850 . T C 3001 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.87;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3034,357,0 chrIV 283892 . A T 3507.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.38;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3507,381,0 chrIV 283896 . A G 3470.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.78;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3470,390,0 chrIV 284171 . C T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=23.42;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3513,393,0 chrIV 284463 . A G 2301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.709;QD=21.91;ReadPosRankSum=1.633;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2334,264,0 chrIV 285187 . A T 1907 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.19;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1940,216,0 chrIV 285236 . G A 2473 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.08;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2506,276,0 chrIV 285457 . C T 2739 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.75;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2772,309,0 chrIV 285472 . C T 2801 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0187;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.88;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2834,309,0 chrIV 286258 . A G 4500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=209;Dels=0.00;FS=2.577;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.425;QD=21.53;ReadPosRankSum=2.966;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:3,205:209:99:4500,510,0 chrIV 287757 . C A 5338.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=15.2509;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.18;SB=-3.174e+03 GT:AD:DP:GQ:PL 1/1:0,248:252:99:5338,591,0 chrIV 288063 . G A 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.2303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.250;QD=21.01;ReadPosRankSum=1.617;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:1,180:184:99:3865,438,0 chrIV 288140 . G T 5050.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=16.6341;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.06;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5050,552,0 chrIV 288588 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.43;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3364,372,0 chrIV 288760 . C T 4027.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.4516;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.11;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4027,438,0 chrIV 288918 . C T 4744.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.8954;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.81;SB=-2.705e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4744,510,0 chrIV 288945 . G A 5069.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=15.2497;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.39;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:0,234:237:99:5069,558,0 chrIV 289365 . G A 2877 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.40;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2910,315,0 chrIV 289404 . C T 2630 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2663,288,0 chrIV 289698 . T C 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.417;QD=24.65;ReadPosRankSum=1.700;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2695,303,0 chrIV 290064 . G A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.49;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3853,435,0 chrIV 290079 . C T 4031.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.67;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4031,453,0 chrIV 291246 . G A 3399.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.8968;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.66;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3399,369,0 chrIV 291309 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.8881;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=24.20;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3654,396,0 chrIV 291351 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=22.15;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3345,360,0 chrIV 291369 . C T 2868 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=19.92;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2901,321,0 chrIV 291387 . G A 2748 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=18.95;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2781,303,0 chrIV 291408 . A G 2534 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=18.50;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2567,294,0 chrIV 291582 . G A 4126.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4177;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=24.86;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4126,450,0 chrIV 291726 . T A 3348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=4.822;HaplotypeScore=7.0680;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;MQRankSum=0.370;QD=19.35;ReadPosRankSum=1.672;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3348,363,0 chrIV 291738 . T C 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=4.642;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;MQRankSum=0.000;QD=17.47;ReadPosRankSum=1.669;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:2951,351,0 chrIV 291748 . C T 2793 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=18.02;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2826,309,0 chrIV 291765 . C T 2502 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=17.87;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2535,285,0 chrIV 291846 . G A 3207 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.43;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3240,351,0 chrIV 292017 . T G 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.3937;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.482;QD=22.41;ReadPosRankSum=1.650;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3809,432,0 chrIV 292188 . A G 3682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.003;QD=21.28;ReadPosRankSum=1.712;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3682,414,0 chrIV 292428 . A G 2634 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.31;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2667,303,0 chrIV 292500 . G A 2981 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=22.41;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3014,324,0 chrIV 292517 . G A 2593 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.61;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2626,285,0 chrIV 292555 . A G 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;MQRankSum=-0.896;QD=16.34;ReadPosRankSum=1.702;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1928,219,0 chrIV 292574 . T A 1602 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;QD=14.43;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1635,177,0 chrIV 292597 . C T 1737 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;QD=15.37;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1770,192,0 chrIV 292605 . G A 1687 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;QD=14.42;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1720,192,0 chrIV 292611 . T C 1732 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=14.08;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1765,201,0 chrIV 292701 . G A 3072 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.76;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3105,339,0 chrIV 292751 . A G 2475 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=21.90;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2508,282,0 chrIV 292776 . A G 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=108;Dels=0.00;FS=6.144;HaplotypeScore=7.2998;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=-1.392;QD=22.91;ReadPosRankSum=2.358;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2507,279,0 chrIV 292948 . C T 3008 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.80;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3041,333,0 chrIV 293191 . A T 2756 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.41;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2789,312,0 chrIV 293530 . A G 3477.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3477,405,0 chrIV 293950 . G A 3387.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.3397;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.04;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3387,366,0 chrIV 293968 . A G 2896 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=20.83;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2929,336,0 chrIV 294391 . T A 3529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=155;Dels=0.00;FS=4.288;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.325;QD=22.77;ReadPosRankSum=1.664;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3529,384,0 chrIV 294427 . A G 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.272;QD=21.47;ReadPosRankSum=1.707;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3060,345,0 chrIV 294481 . C T 4002.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.8107;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4002,429,0 chrIV 294643 . G A 2799 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2832,324,0 chrIV 295157 . A G 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=3.493;HaplotypeScore=11.7131;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.775;QD=21.40;ReadPosRankSum=1.709;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3274,384,0 chrIV 295338 . T C 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.8588;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.993;QD=22.54;ReadPosRankSum=1.693;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4035,462,0 chrIV 295520 . T A 3778.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.47;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3778,429,0 chrIV 295526 . A G 3571.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.88;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3571,405,0 chrIV 295943 . G T 3871.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.63;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3871,426,0 chrIV 296301 . G C 4213.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.5767;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.07;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,195:200:99:4213,477,0 chrIV 296793 . A G 4066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=3.393;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.523;QD=24.35;ReadPosRankSum=1.711;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:4066,462,0 chrIV 296817 . A G 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=3.328;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.876;QD=23.44;ReadPosRankSum=1.630;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3985,456,0 chrIV 296942 . G A 2929 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.43;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2962,327,0 chrIV 297184 . A G 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=119;Dels=0.00;FS=4.449;HaplotypeScore=12.7978;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.258;QD=22.08;ReadPosRankSum=1.584;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2660,303,0 chrIV 298612 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.14;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3721,423,0 chrIV 299200 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.76;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3754,420,0 chrIV 299385 . T A 3744.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.25;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3744,402,0 chrIV 299792 . G A 5676.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.98;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5676,615,0 chrIV 299808 . A G 4683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=215;Dels=0.00;FS=7.319;HaplotypeScore=5.9167;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.455;QD=21.78;ReadPosRankSum=2.127;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:2,211:215:99:4683,519,0 chrIV 300204 . A T 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=123;Dels=0.00;FS=5.101;HaplotypeScore=6.6902;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.253;QD=20.68;ReadPosRankSum=1.619;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2577,282,0 chrIV 300521 . C G 5493.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.68;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:5493,624,0 chrIV 303051 . C A 3031 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.3894;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.55;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3064,333,0 chrIV 303088 . T A 3225.28 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=18.12;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3258,354,0 chrIV 303098 . A G 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=184;Dels=0.00;FS=7.600;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=-1.075;QD=16.41;ReadPosRankSum=2.356;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3052,339,0 chrIV 303104 . G C 3101 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=16.49;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3134,348,0 chrIV 303140 . C T 2793 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=16.33;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:2826,321,0 chrIV 303684 . C T 4695.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4695,519,0 chrIV 303806 . G A 4536.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.8988;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=22.34;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4536,492,0 chrIV 303886 . T C 4815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=211;Dels=0.00;FS=7.845;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.110;QD=22.82;ReadPosRankSum=2.403;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:2,207:211:99:4815,549,0 chrIV 304248 . C T 3627.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.6374;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.34;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3627,405,0 chrIV 304554 . G C 3775.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.30;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3775,420,0 chrIV 306115 . G A 2889 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.49;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2922,315,0 chrIV 306463 . C T 1755 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=18.09;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1788,198,0 chrIV 306490 . C T 2256 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.14;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2289,249,0 chrIV 306736 . A G 1861 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.70;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1894,216,0 chrIV 306752 . T C 1624 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.30;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1657,189,0 chrIV 307550 . A T 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=114;Dels=0.00;FS=7.309;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-0.229;QD=21.18;ReadPosRankSum=2.406;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2448,264,0 chrIV 307571 . C T 2274 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=20.12;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2307,255,0 chrIV 307596 . G A 2616 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=17.32;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2649,300,0 chrIV 307610 . G A 2559 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=15.99;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2592,294,0 chrIV 307671 . A G 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=3.452;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.123;QD=20.22;ReadPosRankSum=1.710;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3167,360,0 chrIV 307920 . C T 3778.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.3657;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.91;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3778,417,0 chrIV 307984 . T C 2285 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.1331;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=18.73;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2318,270,0 chrIV 308008 . A G 2121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=112;Dels=0.00;FS=3.007;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=0.565;QD=18.94;ReadPosRankSum=2.361;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2154,252,0 chrIV 308058 . A G 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.234;QD=19.78;ReadPosRankSum=1.661;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2940,336,0 chrIV 308138 . C T 2524 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.03;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2557,288,0 chrIV 308160 . T G 2445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=116;Dels=0.01;FS=3.617;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.587;QD=21.08;ReadPosRankSum=1.642;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2478,294,0 chrIV 308593 . A G 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=120;Dels=0.00;FS=3.027;HaplotypeScore=10.2405;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.297;QD=22.78;ReadPosRankSum=2.409;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2767,312,0 chrIV 308866 . C T 4332.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4332,480,0 chrIV 310329 . A T 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=5.030;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=1.560;QD=23.00;ReadPosRankSum=1.703;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2816,312,0 chrIV 310698 . T C 2033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;MQRankSum=0.717;QD=20.54;ReadPosRankSum=1.697;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2066,237,0 chrIV 310763 . C T 3161 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6979;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.58;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3194,351,0 chrIV 310900 . G A 2782 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2815,300,0 chrIV 310948 . G A 3473.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.95;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3473,378,0 chrIV 311212 . T C 3449.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.83;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3449,390,0 chrIV 311386 . A G 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=170;Dels=0.00;FS=3.014;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.568;QD=22.68;ReadPosRankSum=2.363;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3855,435,0 chrIV 311442 . T G 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=150;Dels=0.00;FS=3.641;HaplotypeScore=11.6432;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.194;QD=20.63;ReadPosRankSum=1.638;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3128,357,0 chrIV 311476 . A G 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.3974;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.421;QD=20.65;ReadPosRankSum=1.643;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3254,369,0 chrIV 311500 . A G 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-1.415;QD=19.97;ReadPosRankSum=1.692;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3495,414,0 chrIV 311602 . G A 3147 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.16;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3180,357,0 chrIV 311752 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.45;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3100,342,0 chrIV 311826 . A G 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=148;Dels=0.00;FS=3.507;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.983;QD=21.30;ReadPosRankSum=1.662;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3186,363,0 chrIV 311890 . T G 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=180;Dels=0.00;FS=2.571;HaplotypeScore=20.3274;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.883;QD=22.58;ReadPosRankSum=2.961;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:4065,456,0 chrIV 312115 . C T 6115.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=14.9043;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.00;SB=-3.214e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:6115,669,0 chrIV 312184 . C T 6093.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.08;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:6093,699,0 chrIV 312250 . T C 6438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.395;DP=293;Dels=0.00;FS=15.605;HaplotypeScore=17.4254;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=2.302;QD=21.97;ReadPosRankSum=3.401;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:4,286:293:99:6438,726,0 chrIV 312391 . C T 4403.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=15.8634;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.05;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4403,474,0 chrIV 312431 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.9008;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.06;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3981,453,0 chrIV 312468 . T C 3317.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=19.40;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3317,372,0 chrIV 312495 . T G 2528 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=16.85;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2561,297,0 chrIV 312501 . G C 2364 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=17.13;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2397,273,0 chrIV 312569 . A T 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=133;Dels=0.00;FS=7.404;HaplotypeScore=14.3859;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.046;QD=21.27;ReadPosRankSum=2.394;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2862,309,0 chrIV 312602 . C T 3556.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=22.36;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3556,399,0 chrIV 312695 . C T 3021 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.54;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3054,342,0 chrIV 312701 . T C 2973 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.19;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3006,342,0 chrIV 312759 . T A 3724.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.57;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3724,408,0 chrIV 313108 . G A 3986.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.4096;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3986,429,0 chrIV 313223 . T C 4018.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.0515;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.26;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4018,456,0 chrIV 313566 . C T 3684.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.49;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3684,423,0 chrIV 313575 . G A 3882.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.11;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3882,417,0 chrIV 313682 . G C 3434.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.8601;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.52;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3434,387,0 chrIV 313857 . T C 3647.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.79;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3647,411,0 chrIV 313974 . G A 3153 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=15.1829;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.47;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3186,360,0 chrIV 314015 . T C 2759 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.74;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2792,327,0 chrIV 314207 . A C 1311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=39.8487;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;MQRankSum=-0.650;QD=20.48;ReadPosRankSum=1.678;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1344,153,0 chrIV 314232 . C A 1347 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=19.24;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1380,150,0 chrIV 314269 . G C 1225 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=17.01;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1258,144,0 chrIV 314500 . C T 2811 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.23;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2844,312,0 chrIV 315134 . A G 1840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=4.125;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.817;QD=17.36;ReadPosRankSum=1.699;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1873,222,0 chrIV 315198 . C T 754 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=81.0089;MLEAC=2;MLEAF=1.00;MQ=40.68;MQ0=0;QD=7.85;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:93:787,93,0 chrIV 315588 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=157;Dels=0.00;FS=4.223;HaplotypeScore=10.2984;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=1.044;QD=23.00;ReadPosRankSum=1.643;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3611,408,0 chrIV 315810 . G A 3591.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.3596;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.17;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3591,387,0 chrIV 315813 . A G 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.0677;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=0.305;QD=19.38;ReadPosRankSum=1.713;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,181:185:99:3585,408,0 chrIV 316029 . T C 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.219;QD=22.93;ReadPosRankSum=1.688;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3646,411,0 chrIV 316389 . G A 4482.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.30;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4482,495,0 chrIV 316640 . A G 3640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-0.219;QD=23.04;ReadPosRankSum=1.710;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3640,411,0 chrIV 316669 . C T 3455.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.6943;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.44;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3455,381,0 chrIV 316810 . G A 2034 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=21.64;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2067,222,0 chrIV 316823 . T G 1978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=94;Dels=0.00;FS=6.463;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=0.466;QD=21.04;ReadPosRankSum=1.620;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2011,228,0 chrIV 316848 . G C 1989 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.94;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2022,228,0 chrIV 316862 . T A 2143 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.56;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2176,240,0 chrIV 316965 . G C 1710 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1743,201,0 chrIV 317043 . A G 1836 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.12;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1869,216,0 chrIV 317652 . A G 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.0742;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.195;QD=21.48;ReadPosRankSum=1.683;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3083,363,0 chrIV 317820 . A C 2510 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.8024;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.83;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2543,297,0 chrIV 317913 . G T 2832 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2865,318,0 chrIV 318023 . A G 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.621;DP=108;Dels=0.00;FS=8.119;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.492;QD=18.92;ReadPosRankSum=3.740;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:5,101:108:99:2076,237,0 chrIV 318102 . A G 2337 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.47;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2370,273,0 chrIV 318156 . A G 2099 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.09;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2132,246,0 chrIV 318226 . T C 2440 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.7219;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.59;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2473,288,0 chrIV 318270 . G A 2738 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=15.2264;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.06;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2771,315,0 chrIV 318317 . G A 3967.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.64;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3967,432,0 chrIV 318348 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.59;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4010,450,0 chrIV 318605 . A G 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.599;DP=154;Dels=0.00;FS=2.563;HaplotypeScore=11.2887;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-1.178;QD=17.16;ReadPosRankSum=2.941;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:3,150:154:99:2675,309,0 chrIV 318618 . C T 2767 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=18.57;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2800,318,0 chrIV 318659 . G A 3021 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.43;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3054,336,0 chrIV 319317 . A G 4107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=186;Dels=0.00;FS=3.081;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.077;QD=22.08;ReadPosRankSum=1.695;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4107,477,0 chrIV 319482 . G A 4068.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4068,459,0 chrIV 319599 . G A 3069 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.55;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3102,336,0 chrIV 319641 . C T 2657 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.2697;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.26;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2690,297,0 chrIV 320124 . A T 2805 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.2369;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.47;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2838,306,0 chrIV 320177 . C G 1898 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.98;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1931,228,0 chrIV 320475 . A G 2767 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2800,318,0 chrIV 320548 . T C 2846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=126;Dels=0.00;FS=3.032;HaplotypeScore=9.3589;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.876;QD=22.59;ReadPosRankSum=2.332;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2879,321,0 chrIV 320589 . T A 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=152;Dels=0.00;FS=3.020;HaplotypeScore=15.1010;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.170;QD=24.41;ReadPosRankSum=2.417;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3710,402,0 chrIV 320785 . G A 3362.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.83;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3362,387,0 chrIV 320881 . A G 4873.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.6873;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.09;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4873,552,0 chrIV 320953 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;DP=160;Dels=0.00;FS=9.991;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.684;QD=21.15;ReadPosRankSum=2.929;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:3,153:160:99:3384,378,0 chrIV 321012 . A G 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=146;Dels=0.00;FS=2.858;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=0.682;QD=19.15;ReadPosRankSum=2.416;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2829,321,0 chrIV 321013 . A G 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.514;QD=19.80;ReadPosRankSum=1.708;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2904,321,0 chrIV 321025 . G A 2974 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=19.70;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3007,324,0 chrIV 321074 . T G 2867 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=17.17;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:2900,339,0 chrIV 321145 . A G 3752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=3.039;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.795;QD=24.52;ReadPosRankSum=2.417;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3752,426,0 chrIV 321192 . T A 2653 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.8866;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.68;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2686,294,0 chrIV 321295 . G A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.84;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3385,372,0 chrIV 321602 . A G 1523 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9990;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=15.70;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1556,183,0 chrIV 321609 . C T 1829 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3404;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=17.59;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1862,204,0 chrIV 321674 . A T 1734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.274;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;MQRankSum=-0.815;QD=16.83;ReadPosRankSum=1.664;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1767,189,0 chrIV 321675 . T C 1553 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=15.08;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1586,183,0 chrIV 321734 . T C 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=3.407;HaplotypeScore=11.5750;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-0.387;QD=18.05;ReadPosRankSum=1.497;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1892,213,0 chrIV 321824 . T C 2541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.532;DP=138;Dels=0.00;FS=9.023;HaplotypeScore=3.1859;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;MQRankSum=0.654;QD=18.41;ReadPosRankSum=3.001;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:4,134:138:99:2574,297,0 chrIV 321827 . C A 2610 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1311;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=19.33;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2643,291,0 chrIV 321853 . A G 2482 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.02;FS=0.000;HaplotypeScore=18.2983;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=17.24;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2515,285,0 chrIV 321902 . A T 2621 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.72;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2654,297,0 chrIV 322365 . T C 2461 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=20.86;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2494,288,0 chrIV 322379 . T C 2341 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=20.18;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2374,270,0 chrIV 322387 . A G 2266 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=19.20;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2299,270,0 chrIV 322389 . A G 2297 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=19.14;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2330,273,0 chrIV 322420 . A G 2676 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=19.68;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2709,306,0 chrIV 322488 . C T 3146 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=23.30;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3179,342,0 chrIV 322491 . C A 2851 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=20.96;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2884,327,0 chrIV 322657 . A T 2328 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=22.38;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2361,255,0 chrIV 322680 . A C 2503 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.39;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,113:117:99:2536,291,0 chrIV 323098 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.48;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2699,288,0 chrIV 323200 . G T 2419 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2452,267,0 chrIV 323557 . T C 2202 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.02;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2235,255,0 chrIV 323657 . A G 2479 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=19.99;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2512,288,0 chrIV 323681 . T C 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=3.222;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=37.18;MQ0=0;MQRankSum=-1.127;QD=13.54;ReadPosRankSum=1.705;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:1753,215,0 chrIV 323690 . A G 663 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=75.8057;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;QD=5.30;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:81:696,81,0 chrIV 323714 . A G 1306 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.99;MQ0=0;QD=12.68;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1339,156,0 chrIV 323719 . T C 1371 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.34;MQ0=0;QD=12.58;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1404,162,0 chrIV 323798 . T C 1731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.563;DP=83;Dels=0.00;FS=10.406;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.713;QD=20.86;ReadPosRankSum=2.738;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:3,79:83:99:1764,201,0 chrIV 324000 . G A 2812 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.43;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2845,321,0 chrIV 324486 . A T 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.6228;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=20.15;ReadPosRankSum=1.619;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1887,207,0 chrIV 324545 . T C 2218 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.75;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2251,255,0 chrIV 324674 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2006,219,0 chrIV 324926 . C T 2829 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2862,318,0 chrIV 325079 . C A 3101 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6540;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.24;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3134,351,0 chrIV 325106 . T C 3212.98 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.79;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3246,369,0 chrIV 325337 . A C 2279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.635;QD=21.10;ReadPosRankSum=1.635;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2312,261,0 chrIV 326210 . G C 3019 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.88;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3052,345,0 chrIV 326395 . T C 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=156;Dels=0.00;FS=2.899;HaplotypeScore=5.9300;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.985;QD=20.03;ReadPosRankSum=2.371;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3157,360,0 chrIV 326469 . C T 4054.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.90;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4054,462,0 chrIV 326516 . T C 4546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.6991;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=1.431;QD=21.75;ReadPosRankSum=0.795;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4546,513,0 chrIV 326523 . C T 4649.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.14;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4649,507,0 chrIV 326684 . G C 3673.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.0073;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.18;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3673,429,0 chrIV 326933 . C T 2528 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.98;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2561,285,0 chrIV 326984 . A G 3279.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.57;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3279,372,0 chrIV 326990 . C T 3462.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.64;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3462,384,0 chrIV 327156 . A G 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=151;Dels=0.00;FS=2.928;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-1.204;QD=20.76;ReadPosRankSum=2.417;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3168,357,0 chrIV 327158 . T C 3108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=3.471;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.639;QD=20.86;ReadPosRankSum=1.709;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3141,354,0 chrIV 327267 . C T 2826 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.41;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2859,312,0 chrIV 327281 . T G 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=129;Dels=0.00;FS=3.680;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=0.165;QD=20.04;ReadPosRankSum=1.705;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,125:129:99:2618,297,0 chrIV 327372 . A G 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.535;QD=22.37;ReadPosRankSum=1.701;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2516,285,0 chrIV 327461 . T C 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.5302;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.389;QD=22.78;ReadPosRankSum=1.703;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2789,312,0 chrIV 327527 . A G 3303.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.43;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3303,381,0 chrIV 327647 . G A 2244 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.79;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2277,246,0 chrIV 328031 . G T 3033 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.26;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3066,330,0 chrIV 328142 . A G 2739 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9318;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.29;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2772,318,0 chrIV 328153 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=20.82;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3094,333,0 chrIV 328243 . G A 2410 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.40;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2443,267,0 chrIV 328361 . T C 2767 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.9188;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.25;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2800,318,0 chrIV 328502 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.231;QD=22.33;ReadPosRankSum=1.709;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3350,396,0 chrIV 328586 . T C 2727 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2760,315,0 chrIV 328781 . A G 3578.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=22.79;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3578,411,0 chrIV 328835 . A G 3342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=3.889;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.024;QD=23.37;ReadPosRankSum=1.708;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3342,378,0 chrIV 328936 . A G 2582 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=20.17;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2615,303,0 chrIV 328957 . A C 3031 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.62;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3064,342,0 chrIV 329052 . G A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.90;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3321,375,0 chrIV 329234 . C A 3026 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.6351;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.41;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3059,333,0 chrIV 329319 . G C 2942 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.12;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2975,333,0 chrIV 329366 . G T 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.8891;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.643;QD=22.19;ReadPosRankSum=1.666;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,106:109:99:2452,267,0 chrIV 329786 . A T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=2.41;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrIV 329842 . T C 1639 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.133;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=10.7440;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.677;QD=21.29;ReadPosRankSum=3.340;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,73:77:99:1672,186,0 chrIV 330214 . T C 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=162;Dels=0.00;FS=2.707;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.542;QD=23.12;ReadPosRankSum=2.404;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3745,429,0 chrIV 330288 . C T 3887.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=15.0885;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3887,435,0 chrIV 330635 . G A 3854.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=147.2187;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.72;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3854,414,0 chrIV 330653 . A C 3469.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.03;FS=0.000;HaplotypeScore=16.7737;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=18.55;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3469,402,0 chrIV 330832 . A G 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=162;Dels=0.00;FS=2.923;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-0.330;QD=18.07;ReadPosRankSum=2.419;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:2961,345,0 chrIV 330835 . G A 3105 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=18.70;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3138,348,0 chrIV 330985 . C G 4621.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=20.1663;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.22;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,204:208:99:4621,528,0 chrIV 331409 . T C 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=165;Dels=0.00;FS=12.306;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.451;QD=20.24;ReadPosRankSum=2.957;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:3,160:165:99:3339,390,0 chrIV 331756 . C T 1902 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=18.83;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1935,210,0 chrIV 331757 . C T 1891 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=18.54;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1924,207,0 chrIV 331794 . A G 1949 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=18.92;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1982,222,0 chrIV 331865 . A G 2210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.4680;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=0.509;QD=21.67;ReadPosRankSum=1.698;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2243,249,0 chrIV 331872 . A G 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=102;Dels=0.00;FS=4.523;HaplotypeScore=1.9648;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;MQRankSum=0.577;QD=20.36;ReadPosRankSum=-0.136;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2110,217,0 chrIV 331885 . G A 2184 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.5628;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=21.20;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2217,243,0 chrIV 331911 . A T 1595 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.12;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1628,186,0 chrIV 332001 . T C 2466 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=24.18;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2499,279,0 chrIV 332744 . G T 1601 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.27;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1634,183,0 chrIV 332754 . G A 1518 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.79;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1551,168,0 chrIV 332781 . C T 1294 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=19.61;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1327,150,0 chrIV 332995 . A T 1228 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.81;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1261,138,0 chrIV 333019 . G A 1257 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=19.64;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1290,138,0 chrIV 333208 . T C 2265 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.84;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2298,255,0 chrIV 333466 . T C 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=140;Dels=0.00;FS=3.073;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=1.089;QD=21.71;ReadPosRankSum=1.658;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3072,357,0 chrIV 333580 . T C 3386.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.9092;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.88;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3386,393,0 chrIV 333642 . T A 2624 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.43;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2657,291,0 chrIV 333664 . G A 2373 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.97;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2406,264,0 chrIV 333682 . G C 2228 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.04;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2261,264,0 chrIV 333747 . G A 3005 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.51;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3038,327,0 chrIV 333753 . A T 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-1.545;QD=19.82;ReadPosRankSum=1.608;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3310,357,0 chrIV 333802 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.15;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3500,378,0 chrIV 333847 . C T 2824 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.93;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2857,315,0 chrIV 334080 . A G 2629 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.66;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2662,303,0 chrIV 334393 . T C 4408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=3.488;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.588;QD=22.96;ReadPosRankSum=1.678;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4408,501,0 chrIV 334761 . G C 4442.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=16.8273;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.67;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4442,519,0 chrIV 334888 . T C 5549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.762;DP=312;Dels=0.00;FS=16.338;HaplotypeScore=5.9167;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=0.006;QD=17.79;ReadPosRankSum=4.766;SB=-3.256e+03 GT:AD:DP:GQ:PL 1/1:8,303:312:99:5549,633,0 chrIV 334894 . T C 5817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.289;DP=335;Dels=0.00;FS=8.060;HaplotypeScore=11.1737;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=0.212;QD=17.36;ReadPosRankSum=3.372;SB=-3.328e+03 GT:AD:DP:GQ:PL 1/1:4,328:335:99:5817,657,0 chrIV 334985 . T C 5381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=23.0725;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.605;QD=21.35;ReadPosRankSum=1.718;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:1,251:252:99:5381,621,0 chrIV 335143 . C T 5973.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=13.3483;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.56;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:5973,648,0 chrIV 335243 . G C 5641.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=20.4397;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.53;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:0,256:262:99:5641,642,0 chrIV 335293 . T C 4424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=203;Dels=0.00;FS=3.023;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.103;QD=21.79;ReadPosRankSum=2.401;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4424,504,0 chrIV 335332 . A C 4206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=3.262;HaplotypeScore=14.3942;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.489;QD=21.46;ReadPosRankSum=1.679;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4206,477,0 chrIV 335392 . A G 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=187;Dels=0.00;FS=2.887;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.554;QD=19.05;ReadPosRankSum=2.423;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:2,182:187:99:3563,405,0 chrIV 335410 . C T 3321.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=18.45;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3321,384,0 chrIV 335428 . C A 3454.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.5121;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=18.87;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3454,381,0 chrIV 335524 . C T 3984.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=21.8996;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.89;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:3984,453,0 chrIV 335956 . T C 4055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=204;Dels=0.00;FS=6.583;HaplotypeScore=16.6403;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.767;QD=19.88;ReadPosRankSum=2.376;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:2,198:204:99:4055,468,0 chrIV 336327 . T C 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.322;QD=21.51;ReadPosRankSum=1.655;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2958,333,0 chrIV 336657 . C T 3037 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.85;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3070,333,0 chrIV 336851 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.47;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3279,360,0 chrIV 336884 . C G 2962 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.78;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2995,339,0 chrIV 336922 . C G 3054 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2085;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.23;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3087,345,0 chrIV 336943 . T C 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=148;Dels=0.00;FS=2.959;HaplotypeScore=5.9472;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.194;QD=20.00;ReadPosRankSum=2.416;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:2993,351,0 chrIV 337188 . A G 3957.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.9768;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.74;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3957,453,0 chrIV 337582 . C T 4056.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.05;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4056,435,0 chrIV 337779 . A T 2712 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.8415;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.41;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2745,303,0 chrIV 337809 . A G 2352 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.58;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2385,273,0 chrIV 338341 . G A 2490 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.94;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2523,273,0 chrIV 338368 . G A 2277 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.08;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2310,261,0 chrIV 338428 . A G 2448 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.25;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2481,285,0 chrIV 338623 . T C 2939 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.78;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2972,339,0 chrIV 338718 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.01;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3498,384,0 chrIV 338980 . T C 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.227;DP=175;Dels=0.00;FS=8.870;HaplotypeScore=12.8123;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.914;QD=21.70;ReadPosRankSum=3.389;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:4,169:175:99:3797,432,0 chrIV 339115 . T C 4576.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.77;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4576,516,0 chrIV 339391 . A G 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.710;DP=157;Dels=0.00;FS=2.577;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-1.213;QD=20.53;ReadPosRankSum=2.955;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:3256,378,0 chrIV 339421 . G A 3196 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.03;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3229,366,0 chrIV 339528 . G A 2457 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.37;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2490,273,0 chrIV 339556 . T C 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.207;QD=20.39;ReadPosRankSum=1.680;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2745,309,0 chrIV 339743 . C T 2594 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.56;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2627,285,0 chrIV 339880 . C T 2825 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.42;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2858,318,0 chrIV 339988 . A T 3189 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.78;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3222,354,0 chrIV 340208 . C T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=24.30;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3791,408,0 chrIV 340351 . C T 2780 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4637;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.44;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2813,309,0 chrIV 340395 . A T 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=129;Dels=0.00;FS=15.247;HaplotypeScore=100.8809;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;MQRankSum=-1.504;QD=14.83;ReadPosRankSum=4.065;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:6,123:129:99:1946,179,0 chrIV 340555 . G T 4704.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=25.29;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4704,513,0 chrIV 340874 . T G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=104;Dels=0.00;FS=6.144;HaplotypeScore=96.0480;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=-0.544;QD=0.15;ReadPosRankSum=2.855;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:6:47,6,0 chrIV 340916 . T C 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=3.338;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-0.346;QD=20.75;ReadPosRankSum=1.669;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2336,261,0 chrIV 340965 . A T 2317 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.28;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2350,261,0 chrIV 341033 . G A 2157 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=84.0599;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=22.47;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2190,240,0 chrIV 341077 . C T 1797 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=19.32;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1830,198,0 chrIV 341570 . A T 3734.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.57;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3734,408,0 chrIV 341736 . G A 3973.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.65;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3973,435,0 chrIV 341782 . A G 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=154;Dels=0.00;FS=2.997;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-1.454;QD=22.25;ReadPosRankSum=2.385;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3427,384,0 chrIV 341812 . G A 3016 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.18;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3049,330,0 chrIV 341953 . G A 3460.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.07;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3460,375,0 chrIV 341978 . A C 2754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.062;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-0.149;QD=19.67;ReadPosRankSum=2.046;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2787,301,0 chrIV 342525 . C T 3688.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.2468;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.95;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3688,399,0 chrIV 342597 . C T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=17.02;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3335,366,0 chrIV 342600 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=16.47;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3261,372,0 chrIV 342650 . T C 3900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.9518;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-0.649;QD=17.03;ReadPosRankSum=2.332;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:3900,456,0 chrIV 342869 . A G 7076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.258;DP=326;Dels=0.00;FS=8.814;HaplotypeScore=22.1765;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-0.083;QD=21.71;ReadPosRankSum=3.333;SB=-3.595e+03 GT:AD:DP:GQ:PL 1/1:4,321:326:99:7076,830,0 chrIV 343097 . T A 4427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=201;Dels=0.00;FS=4.663;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.409;QD=22.02;ReadPosRankSum=1.680;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4427,492,0 chrIV 343292 . G A 3859.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.82;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3859,417,0 chrIV 343313 . G T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.45;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3776,408,0 chrIV 343448 . T C 4214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.619;DP=194;Dels=0.00;FS=11.554;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.758;QD=21.72;ReadPosRankSum=3.767;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:5,186:194:99:4214,483,0 chrIV 343523 . T C 4214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=195;Dels=0.00;FS=5.976;HaplotypeScore=12.5546;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-2.197;QD=21.61;ReadPosRankSum=2.933;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:3,191:195:99:4214,477,0 chrIV 344321 . G A 2216 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.31;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2249,261,0 chrIV 344363 . G A 2586 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2619,288,0 chrIV 344480 . A G 5048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=224;Dels=0.00;FS=4.655;HaplotypeScore=10.7708;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.905;QD=22.54;ReadPosRankSum=1.701;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,221:224:99:5048,605,0 chrIV 344899 . C T 5182.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.87;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5182,579,0 chrIV 344995 . G A 6657.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=9.6203;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.64;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:0,292:294:99:6657,747,0 chrIV 345017 . C T 6729.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=9.8532;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=23.12;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,291:291:99:6729,738,0 chrIV 345083 . A C 5343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=239;Dels=0.00;FS=9.197;HaplotypeScore=15.8475;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.700;QD=22.36;ReadPosRankSum=2.971;SB=-2.981e+03 GT:AD:DP:GQ:PL 1/1:3,236:239:99:5343,600,0 chrIV 345134 . T C 5705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=248;Dels=0.00;FS=4.702;HaplotypeScore=11.9244;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.978;QD=23.00;ReadPosRankSum=1.676;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:5705,654,0 chrIV 345195 . A G 5596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=4.5775;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=0.608;QD=20.88;ReadPosRankSum=1.706;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,267:268:99:5596,648,0 chrIV 345209 . A G 5500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=8.3253;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=-1.642;QD=20.99;ReadPosRankSum=2.965;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:3,258:261:99:5500,636,0 chrIV 345524 . T C 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=-1.685;QD=21.37;ReadPosRankSum=1.685;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3196,369,0 chrIV 345541 . A T 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.327;DP=146;Dels=0.00;FS=15.417;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=0.054;QD=21.49;ReadPosRankSum=3.327;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:4,142:146:99:3170,342,0 chrIV 345627 . T C 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-1.644;QD=21.13;ReadPosRankSum=1.688;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3360,378,0 chrIV 345639 . T C 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.6873;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=0.656;QD=20.65;ReadPosRankSum=1.711;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3345,384,0 chrIV 345766 . C T 3563.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=20.96;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3563,393,0 chrIV 345769 . T C 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=173;Dels=0.00;FS=9.736;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=-1.287;QD=19.90;ReadPosRankSum=2.936;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:99:3443,393,0 chrIV 346111 . T C 4838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=208;Dels=0.00;FS=3.271;HaplotypeScore=11.4631;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.177;QD=23.26;ReadPosRankSum=1.698;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:4838,546,0 chrIV 346360 . C A 3201 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=20.79;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3234,360,0 chrIV 346366 . C T 3186 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.19;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3219,366,0 chrIV 346477 . G A 3752.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=24.21;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3752,405,0 chrIV 346531 . T C 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.335;DP=155;Dels=0.00;FS=8.446;HaplotypeScore=5.1106;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=0.796;QD=20.00;ReadPosRankSum=3.335;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:4,151:155:99:3133,363,0 chrIV 346536 . T C 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=5.8993;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-1.049;QD=19.95;ReadPosRankSum=1.709;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3005,342,0 chrIV 346745 . G A 4116.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.8226;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.52;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4116,444,0 chrIV 346778 . A T 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=183;Dels=0.01;FS=5.868;HaplotypeScore=20.4885;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.829;QD=21.56;ReadPosRankSum=2.829;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:3945,435,0 chrIV 346843 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.8535;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.419;QD=20.74;ReadPosRankSum=1.713;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3671,420,0 chrIV 346939 . A G 3086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.021;DP=156;Dels=0.00;FS=10.871;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.172;QD=19.78;ReadPosRankSum=4.086;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:6,149:156:99:3119,357,0 chrIV 347059 . T C 3089 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.40;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3122,360,0 chrIV 347078 . A G 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-1.102;QD=22.90;ReadPosRankSum=1.680;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3056,348,0 chrIV 347507 . G A 3704.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3704,414,0 chrIV 347619 . C G 2332 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=18.51;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2365,267,0 chrIV 347623 . G A 2295 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=18.21;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2328,261,0 chrIV 347851 . C T 3014 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=24.11;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3047,333,0 chrIV 347958 . T C 3286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=3.228;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.448;QD=22.98;ReadPosRankSum=1.708;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3286,375,0 chrIV 348204 . G A 2224 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2257,240,0 chrIV 348352 . C T 2146 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.84;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2179,234,0 chrIV 348434 . G A 2147 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2180,237,0 chrIV 348490 . A G 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=3.709;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.909;QD=22.41;ReadPosRankSum=1.698;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2296,258,0 chrIV 348661 . G A 1946 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1979,222,0 chrIV 348778 . G A 2465 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2498,273,0 chrIV 349114 . A G 3411.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.44;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3411,393,0 chrIV 349421 . G A 2761 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.40;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2794,315,0 chrIV 349537 . T C 2383 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2416,276,0 chrIV 349619 . A G 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=3.504;HaplotypeScore=7.4248;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.845;QD=23.73;ReadPosRankSum=1.703;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2928,333,0 chrIV 349654 . A G 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=3.111;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.415;QD=24.36;ReadPosRankSum=1.653;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3224,357,0 chrIV 350046 . A G 2591 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2624,297,0 chrIV 350077 . A G 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.659;QD=24.03;ReadPosRankSum=1.701;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2748,312,0 chrIV 350388 . G T 3405.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.1335;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.16;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3405,372,0 chrIV 350405 . G A 3398.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.24;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3398,384,0 chrIV 350462 . A G 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=163;Dels=0.00;FS=6.210;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-0.264;QD=17.33;ReadPosRankSum=2.359;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:2858,324,0 chrIV 350480 . A G 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=161;Dels=0.00;FS=3.037;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.284;QD=18.66;ReadPosRankSum=2.404;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3037,348,0 chrIV 350505 . A G 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=168;Dels=0.00;FS=6.817;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.111;QD=17.76;ReadPosRankSum=2.390;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3016,339,0 chrIV 350645 . C A 3535.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=16.0523;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.52;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3535,390,0 chrIV 350747 . G A 4712.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=23.80;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4712,513,0 chrIV 350782 . A C 4865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=225;Dels=0.00;FS=9.888;HaplotypeScore=21.7944;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;MQRankSum=0.559;QD=21.62;ReadPosRankSum=2.968;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:3,218:225:99:4865,567,0 chrIV 350887 . T C 5153.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=23.86;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5153,591,0 chrIV 351028 . A G 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;MQRankSum=2.191;QD=12.34;ReadPosRankSum=2.964;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:3,192:195:99:2440,276,0 chrIV 351097 . G A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=18.53;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3238,354,0 chrIV 351100 . C T 3123 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=18.16;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3156,348,0 chrIV 351151 . T A 3146 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=22.31;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3179,342,0 chrIV 351207 . G T 2216 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6996;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=21.51;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2249,249,0 chrIV 351214 . C A 2096 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.03;FS=0.000;HaplotypeScore=7.9325;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=20.75;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2129,234,0 chrIV 351250 . T C 1978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-0.787;QD=17.98;ReadPosRankSum=1.669;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2011,228,0 chrIV 351862 . G A 4402.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.37;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:1,202:206:99:4402,507,0 chrIV 351963 . A G 4760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=223;Dels=0.00;FS=3.950;HaplotypeScore=12.8930;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-1.309;QD=21.35;ReadPosRankSum=1.685;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:1,220:223:99:4760,534,0 chrIV 351988 . C T 4392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=1.8675;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.148;QD=18.77;ReadPosRankSum=-0.918;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:4392,492,0 chrIV 351997 . T C 4307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=241;Dels=0.00;FS=8.001;HaplotypeScore=9.0091;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=-1.074;QD=17.87;ReadPosRankSum=3.403;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:4,237:241:99:4307,495,0 chrIV 352048 . G A 5436.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=12.5550;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=19.35;SB=-3.528e+03 GT:AD:DP:GQ:PL 1/1:0,279:281:99:5436,600,0 chrIV 352424 . A G 5385.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5385,638,0 chrIV 352550 . T C 4756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=233;Dels=0.00;FS=9.543;HaplotypeScore=15.1541;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.649;QD=20.41;ReadPosRankSum=2.407;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:4756,546,0 chrIV 352697 . T C 4479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=3.732;HaplotypeScore=8.1367;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.477;QD=22.85;ReadPosRankSum=1.714;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4479,513,0 chrIV 352902 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.4814;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.35;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3330,363,0 chrIV 353125 . G A 3743.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.4471;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.31;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3743,414,0 chrIV 353410 . T C 4058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=3.002;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.746;QD=23.59;ReadPosRankSum=2.378;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:4058,462,0 chrIV 353682 . T G 4141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=185;Dels=0.00;FS=2.730;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.148;QD=22.38;ReadPosRankSum=2.356;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:4141,465,0 chrIV 354052 . T C 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.453;QD=21.76;ReadPosRankSum=1.673;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3830,435,0 chrIV 354130 . A G 3951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=182;Dels=0.00;FS=2.908;HaplotypeScore=10.0686;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.617;QD=21.71;ReadPosRankSum=2.395;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:3951,441,0 chrIV 354238 . G A 4129.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.9792;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.96;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4129,459,0 chrIV 354286 . C T 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=175;Dels=0.00;FS=3.086;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.711;QD=22.25;ReadPosRankSum=1.632;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3893,414,0 chrIV 354889 . G A 2521 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.71;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2554,285,0 chrIV 354974 . A G 2673 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3678;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.04;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2706,306,0 chrIV 355467 . A G 1736 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.19;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1769,204,0 chrIV 356226 . A G 4483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=197;Dels=0.00;FS=4.816;HaplotypeScore=12.3007;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=1.099;QD=22.76;ReadPosRankSum=1.697;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4483,513,0 chrIV 356766 . A G 3705.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.67;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3705,423,0 chrIV 356807 . G A 3875.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.27;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3875,441,0 chrIV 356934 . A G 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.361;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=1.940;QD=19.07;ReadPosRankSum=-0.764;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2703,312,0 chrIV 356951 . T G 2268 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=16.68;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2301,264,0 chrIV 356965 . A G 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-0.187;QD=14.59;ReadPosRankSum=1.652;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:1944,222,0 chrIV 357312 . T C 4737.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=19.5067;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.57;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:4737,552,0 chrIV 357529 . C T 6417.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=12.7706;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.36;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,286:287:99:6417,699,0 chrIV 357632 . A C 4967.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=13.3952;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.50;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4967,561,0 chrIV 357756 . T C 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=171;Dels=0.00;FS=2.986;HaplotypeScore=12.9700;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.958;QD=16.24;ReadPosRankSum=2.391;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:2,166:171:99:2810,324,0 chrIV 357802 . C T 3291.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=16.1758;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.36;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3291,363,0 chrIV 358050 . G A 4474.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=24.32;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4474,480,0 chrIV 358197 . C T 4346.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.7243;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=25.72;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4346,465,0 chrIV 358230 . T A 3362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.320;DP=163;Dels=0.00;FS=14.401;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=0.488;QD=20.63;ReadPosRankSum=3.406;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:4,159:163:99:3362,369,0 chrIV 358243 . T C 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=161;Dels=0.00;FS=6.794;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=-0.827;QD=19.58;ReadPosRankSum=2.388;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:3185,360,0 chrIV 358273 . A G 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.817;DP=150;Dels=0.00;FS=5.992;HaplotypeScore=15.5680;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=1.510;QD=15.07;ReadPosRankSum=2.898;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:3,146:150:99:2293,261,0 chrIV 358299 . T C 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.036;DP=174;Dels=0.00;FS=18.606;HaplotypeScore=10.0086;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-1.630;QD=15.84;ReadPosRankSum=4.136;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:6,168:174:99:2790,315,0 chrIV 358380 . C A 2721 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.46;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2754,309,0 chrIV 358389 . C T 2489 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.75;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2522,282,0 chrIV 358431 . G A 2861 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=20.15;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2894,318,0 chrIV 358553 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.17;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3450,375,0 chrIV 358561 . A T 3445.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.5652;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=19.91;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3445,390,0 chrIV 358643 . G T 3904.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=23.24;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3904,432,0 chrIV 358690 . G T 2650 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=19.20;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2683,297,0 chrIV 358707 . T G 3291.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.7422;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.36;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3291,375,0 chrIV 358755 . A G 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-0.028;QD=20.15;ReadPosRankSum=1.675;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3687,423,0 chrIV 358884 . A C 4208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=3.429;HaplotypeScore=9.5677;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-0.124;QD=21.47;ReadPosRankSum=1.697;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4208,495,0 chrIV 358932 . A G 5348.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=20.8608;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.10;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5348,612,0 chrIV 358989 . T A 4536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.806;DP=202;Dels=0.00;FS=5.284;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.836;QD=22.46;ReadPosRankSum=2.916;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:3,199:202:99:4536,489,0 chrIV 359007 . C T 4026.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=21.53;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4026,438,0 chrIV 359028 . A G 3620.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.5768;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.57;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3620,402,0 chrIV 359069 . T C 4266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.274;DP=234;Dels=0.00;FS=8.825;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=1.538;QD=18.23;ReadPosRankSum=3.401;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:4,230:234:99:4266,495,0 chrIV 359293 . T G 4364.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.6991;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.71;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4364,498,0 chrIV 359402 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=21.07;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3109,333,0 chrIV 359411 . A T 2821 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=19.46;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2854,315,0 chrIV 359427 . A G 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=0.439;QD=19.24;ReadPosRankSum=1.635;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2784,324,0 chrIV 359534 . A T 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=120;Dels=0.00;FS=2.276;HaplotypeScore=8.9726;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.838;QD=22.17;ReadPosRankSum=2.462;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2693,294,0 chrIV 359556 . C A 1938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=110;Dels=0.01;FS=3.707;HaplotypeScore=9.7898;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.674;QD=17.62;ReadPosRankSum=1.476;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:1971,222,0 chrIV 359557 . A G 1889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=109;Dels=0.00;FS=11.457;HaplotypeScore=9.7898;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-1.330;QD=17.33;ReadPosRankSum=2.897;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:5,104:109:99:1922,222,0 chrIV 359718 . G A 2252 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=12.2434;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=19.93;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2285,246,0 chrIV 359743 . A G 2307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.713;DP=117;Dels=0.00;FS=5.413;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-0.991;QD=19.72;ReadPosRankSum=2.940;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:3,113:117:99:2340,261,0 chrIV 360257 . G A 4675.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.10;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4675,516,0 chrIV 360643 . G T 3901.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.97;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3901,429,0 chrIV 360665 . T C 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.1615;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-0.609;QD=18.98;ReadPosRankSum=1.656;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3455,390,0 chrIV 361157 . G A 5435.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=5.0468;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=22.27;SB=-3.192e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5435,588,0 chrIV 361162 . T C 5225.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.73;SB=-3.189e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5225,594,0 chrIV 361183 . A C 4985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=254;Dels=0.00;FS=6.059;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-1.355;QD=19.63;ReadPosRankSum=2.972;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:3,249:254:99:4985,570,0 chrIV 361844 . A G 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=170;Dels=0.00;FS=2.692;HaplotypeScore=10.4707;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.148;QD=20.40;ReadPosRankSum=2.391;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:3468,399,0 chrIV 362015 . A G 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=186;Dels=0.00;FS=4.677;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.275;QD=21.89;ReadPosRankSum=1.675;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,181:186:99:4072,465,0 chrIV 362071 . C T 3965.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.15;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3965,441,0 chrIV 362270 . A G 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.995;QD=21.71;ReadPosRankSum=1.710;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3386,378,0 chrIV 363479 . C G 5063.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.1480;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.11;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5063,582,0 chrIV 363708 . A G 3962.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.31;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3962,450,0 chrIV 364414 . G A 2793 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=13.8586;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.00;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2826,312,0 chrIV 364972 . A G 1520 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=11.1095;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.00;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,73:76:99:1553,177,0 chrIV 365027 . G A 1443 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7918;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.54;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1476,165,0 chrIV 365106 . G A 3433.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=26.8620;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.44;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,147:152:99:3433,378,0 chrIV 365618 . C G 6470.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=9.4804;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.08;SB=-3.555e+03 GT:AD:DP:GQ:PL 1/1:0,292:293:99:6470,729,0 chrIV 365731 . C G 4951.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.91;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,221:226:99:4951,549,0 chrIV 365821 . A G 5108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=244;Dels=0.00;FS=2.663;HaplotypeScore=17.1727;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.524;QD=20.93;ReadPosRankSum=2.419;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:2,242:244:99:5108,579,0 chrIV 365911 . A G 4710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=203;Dels=0.00;FS=6.720;HaplotypeScore=11.8366;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.729;QD=23.20;ReadPosRankSum=2.413;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:2,199:203:99:4710,534,0 chrIV 366344 . C G 3300.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.5322;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.00;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3300,375,0 chrIV 366898 . A G 4304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.712;DP=205;Dels=0.00;FS=11.575;HaplotypeScore=10.6169;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.690;QD=21.00;ReadPosRankSum=3.797;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:5,199:205:99:4304,486,0 chrIV 367042 . A G 5282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=231;Dels=0.00;FS=3.323;HaplotypeScore=16.6742;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.657;QD=22.87;ReadPosRankSum=1.702;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:1,229:231:99:5282,597,0 chrIV 368286 . C T 2548 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.78;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2581,288,0 chrIV 368304 . T A 2704 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.46;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2737,297,0 chrIV 368654 . C G 2200 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.37;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2233,252,0 chrIV 368735 . G A 2427 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.39;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2460,267,0 chrIV 368869 . C T 2394 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.95;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2427,273,0 chrIV 368891 . G C 1993 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=17.95;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,107:111:99:2026,228,0 chrIV 369211 . G A 915 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.30;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:948,102,0 chrIV 369284 . G A 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.413;DP=76;Dels=0.01;FS=10.116;HaplotypeScore=24.7905;MLEAC=1;MLEAF=0.500;MQ=44.43;MQ0=0;MQRankSum=-4.333;QD=0.36;ReadPosRankSum=1.676;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:40,34:75:57:57,0,324 chrIV 369366 . C A 1876 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.16;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,78:81:99:1909,213,0 chrIV 369385 . A G 1446 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.25;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1479,168,0 chrIV 369971 . G T 4671.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.47;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4671,522,0 chrIV 370499 . G A 4142.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.3549;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.51;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4142,456,0 chrIV 370634 . G C 1960 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.67;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,102:105:99:1993,234,0 chrIV 371085 . T C 2044 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=0.021;QD=24.63;ReadPosRankSum=1.649;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:2077,237,0 chrIV 371201 . T C 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.484;QD=23.17;ReadPosRankSum=2.885;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:3,93:96:99:2257,255,0 chrIV 371249 . A G 2739 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.56;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2772,327,0 chrIV 371263 . A G 2692 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=17.26;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2725,315,0 chrIV 371268 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.35;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3098,336,0 chrIV 371437 . T C 4229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=194;Dels=0.00;FS=3.101;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.232;QD=21.80;ReadPosRankSum=1.643;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4229,477,0 chrIV 371914 . T A 4085.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=22.20;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4085,444,0 chrIV 371982 . T C 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=4.279;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=1.686;QD=21.12;ReadPosRankSum=1.709;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3201,363,0 chrIV 372011 . T C 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=4.219;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;MQRankSum=0.421;QD=20.05;ReadPosRankSum=1.707;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2840,324,0 chrIV 372037 . T G 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=150;Dels=0.00;FS=3.965;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=36.57;MQ0=0;MQRankSum=0.318;QD=16.70;ReadPosRankSum=1.709;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,146:150:99:2538,294,0 chrIV 372053 . C T 2663 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.74;MQ0=0;QD=17.87;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2696,294,0 chrIV 372060 . G A 2518 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=0;QD=17.37;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2551,282,0 chrIV 372075 . T C 2268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=4.138;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.079;QD=14.82;ReadPosRankSum=1.709;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2301,261,0 chrIV 372084 . A T 2342 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;MQRankSum=-0.460;QD=15.93;ReadPosRankSum=1.709;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2375,258,0 chrIV 372086 . G A 2216 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=15.18;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2249,252,0 chrIV 372093 . T C 2035 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=4.025;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;MQRankSum=-1.732;QD=14.03;ReadPosRankSum=1.708;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:2068,234,0 chrIV 372119 . C T 1721 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=36.66;MQ0=0;QD=13.77;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1754,201,0 chrIV 372125 . A G 1619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=121;Dels=0.00;FS=2.832;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=0;MQRankSum=0.030;QD=13.38;ReadPosRankSum=2.409;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:1652,186,0 chrIV 372168 . G A 2249 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=20.63;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2282,252,0 chrIV 372201 . C T 2504 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=20.52;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2537,288,0 chrIV 372238 . G T 2638 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;QD=20.45;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2671,291,0 chrIV 372240 . G A 2471 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=19.01;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2504,288,0 chrIV 372358 . A G 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=153;Dels=0.00;FS=8.472;HaplotypeScore=7.2560;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=1.502;QD=21.61;ReadPosRankSum=2.385;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3307,378,0 chrIV 372385 . T C 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-0.324;QD=19.66;ReadPosRankSum=1.687;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,154:158:99:3140,360,0 chrIV 372390 . G A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=21.51;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3312,363,0 chrIV 372433 . T A 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.00;FS=3.757;HaplotypeScore=7.1320;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-1.393;QD=19.13;ReadPosRankSum=1.680;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2615,282,0 chrIV 372540 . A T 2716 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.97;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2749,300,0 chrIV 372546 . A C 2914 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.24;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2947,342,0 chrIV 372821 . C T 4567.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=15.9218;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.72;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4567,495,0 chrIV 372855 . T C 5349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=251;Dels=0.00;FS=6.660;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.929;QD=21.31;ReadPosRankSum=2.410;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:2,246:251:99:5349,624,0 chrIV 373089 . C T 4131.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.34;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4131,447,0 chrIV 373453 . C T 2615 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.09;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2648,297,0 chrIV 373465 . A G 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=4.135;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.517;QD=20.65;ReadPosRankSum=1.611;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2408,273,0 chrIV 373661 . G C 2942 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.2379;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.43;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,140:144:99:2975,342,0 chrIV 373723 . T C 2250 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=11.5939;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=19.40;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2283,255,0 chrIV 373728 . T C 2022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=117;Dels=0.00;FS=5.879;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-1.381;QD=17.28;ReadPosRankSum=2.885;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:3,111:117:99:2055,231,0 chrIV 374659 . G A 4257.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=20.4945;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.92;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4257,462,0 chrIV 374879 . A T 4325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=202;Dels=0.00;FS=3.019;HaplotypeScore=7.3698;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.666;QD=21.41;ReadPosRankSum=2.376;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4325,477,0 chrIV 374903 . G C 3806.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=18.94;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3806,435,0 chrIV 374909 . G A 3923.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.04;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:3923,423,0 chrIV 374960 . C T 2956 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=17.09;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2989,324,0 chrIV 375032 . T A 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=3.092;HaplotypeScore=9.4568;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.011;QD=23.49;ReadPosRankSum=1.711;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3806,411,0 chrIV 375083 . G A 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.871;DP=177;Dels=0.00;FS=3.035;HaplotypeScore=13.3433;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=0.069;QD=21.41;ReadPosRankSum=-1.184;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3789,429,0 chrIV 375171 . A G 2899 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=20.86;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2932,336,0 chrIV 375199 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.45;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3454,372,0 chrIV 375239 . A G 3960.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.9914;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.76;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3960,450,0 chrIV 375282 . C T 4084.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=16.9749;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.47;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4084,444,0 chrIV 375354 . G A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=22.29;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3366,366,0 chrIV 375384 . T A 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=3.858;HaplotypeScore=126.7798;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=-0.307;QD=20.90;ReadPosRankSum=1.683;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2980,324,0 chrIV 375530 . T C 2420 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=20.68;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2453,282,0 chrIV 375533 . A C 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;MQRankSum=0.526;QD=20.48;ReadPosRankSum=1.701;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,111:117:99:2429,276,0 chrIV 375542 . G T 2539 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=22.47;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2572,294,0 chrIV 375580 . A G 2408 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=21.31;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2441,285,0 chrIV 375611 . G A 3209 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=23.77;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3242,351,0 chrIV 375673 . A G 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=3.966;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-1.069;QD=21.43;ReadPosRankSum=1.711;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3472,393,0 chrIV 375690 . G C 3278.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.75;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3278,369,0 chrIV 375769 . T C 2506 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=0;QD=18.98;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2539,291,0 chrIV 375773 . T C 2588 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=19.03;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2621,300,0 chrIV 375776 . T C 2499 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=17.98;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2532,294,0 chrIV 375819 . C A 3000 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=17.75;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3033,324,0 chrIV 375826 . A T 2990 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=16.61;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3023,327,0 chrIV 375947 . A G 2769 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=17.98;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2802,321,0 chrIV 375950 . A T 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;MQRankSum=1.481;QD=18.68;ReadPosRankSum=1.709;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:2909,324,0 chrIV 375978 . A C 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=150;Dels=0.00;FS=2.977;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;MQRankSum=0.696;QD=18.33;ReadPosRankSum=2.417;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:2783,312,0 chrIV 376457 . C T 5029.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.2602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5029,538,0 chrIV 376537 . A G 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.118;DP=181;Dels=0.01;FS=8.603;HaplotypeScore=25.1748;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.942;QD=19.00;ReadPosRankSum=3.411;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:4,175:179:99:3439,393,0 chrIV 376661 . T A 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=160;Dels=0.02;FS=3.736;HaplotypeScore=43.4984;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;MQRankSum=-0.999;QD=22.21;ReadPosRankSum=1.688;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3553,384,0 chrIV 377123 . A G 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.424;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.641;QD=21.86;ReadPosRankSum=-1.460;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4176,455,0 chrIV 377176 . T C 3174 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3207,366,0 chrIV 377486 . T G 2664 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.98;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2697,312,0 chrIV 377551 . T C 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.5478;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.433;QD=23.03;ReadPosRankSum=1.696;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2244,258,0 chrIV 377936 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.01;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2869,324,0 chrIV 378086 . T C 4135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.9700;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.024;QD=22.11;ReadPosRankSum=1.695;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4135,474,0 chrIV 378253 . G T 4822.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.52;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4822,543,0 chrIV 378371 . T C 3827.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.14;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3827,447,0 chrIV 378646 . A G 1711 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.22;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1744,198,0 chrIV 378788 . G A 2482 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.98;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2515,273,0 chrIV 378801 . C T 2348 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.96;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2381,267,0 chrIV 379372 . G A 2614 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.75;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2647,303,0 chrIV 379570 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.040;QD=22.01;ReadPosRankSum=1.692;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3786,429,0 chrIV 379603 . T A 3851.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.34;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3851,435,0 chrIV 379825 . A G 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.199;DP=169;Dels=0.00;FS=8.090;HaplotypeScore=14.7377;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.931;QD=19.47;ReadPosRankSum=3.407;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:4,164:169:99:3291,387,0 chrIV 379874 . G T 2606 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.36;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2639,288,0 chrIV 379882 . G A 2415 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5434;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.02;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2448,267,0 chrIV 380035 . G A 4002.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.9134;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.87;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4002,444,0 chrIV 380086 . A G 3976.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.39;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3976,456,0 chrIV 380427 . C T 2582 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2615,285,0 chrIV 380668 . C T 2295 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.07;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2328,261,0 chrIV 380808 . T C 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=122;Dels=0.00;FS=3.027;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.615;QD=20.19;ReadPosRankSum=2.369;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2496,294,0 chrIV 380824 . T C 2293 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.0883;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=18.34;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2326,264,0 chrIV 380959 . G A 3834.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.69;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3834,438,0 chrIV 381011 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=16.5510;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.214;QD=22.26;ReadPosRankSum=1.709;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3272,372,0 chrIV 381444 . G C 3549.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.88;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3549,405,0 chrIV 381458 . C G 3512.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.16;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3512,393,0 chrIV 381481 . A G 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=-1.352;QD=19.39;ReadPosRankSum=1.690;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3233,366,0 chrIV 381576 . T C 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=145;Dels=0.00;FS=5.908;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.867;QD=18.26;ReadPosRankSum=2.686;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:3,141:145:99:2681,309,0 chrIV 381578 . C T 2851 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.08;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2884,312,0 chrIV 381770 . C T 2348 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.03;FS=0.000;HaplotypeScore=42.4419;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.58;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2381,255,0 chrIV 382153 . G T 6459.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=24.01;SB=-3.434e+03 GT:AD:DP:GQ:PL 1/1:0,268:269:99:6459,720,0 chrIV 382330 . C T 7147.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=20.1414;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.67;SB=-3.657e+03 GT:AD:DP:GQ:PL 1/1:0,301:302:99:7147,804,0 chrIV 382372 . C T 6180.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.15;SB=-3.045e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:6180,690,0 chrIV 382655 . T C 5447.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=18.0659;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.28;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5447,624,0 chrIV 382829 . C T 3857.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.01;FS=0.000;HaplotypeScore=4.8634;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=20.96;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3857,420,0 chrIV 382830 . C T 3825.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.01;FS=0.000;HaplotypeScore=4.8634;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=20.79;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3825,420,0 chrIV 383033 . A G 5225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.205;DP=227;Dels=0.00;FS=14.772;HaplotypeScore=19.9622;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-1.980;QD=23.02;ReadPosRankSum=3.406;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:4,221:227:99:5225,600,0 chrIV 383065 . G A 4444.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=23.64;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4444,507,0 chrIV 383227 . C T 5278.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=23.77;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5278,594,0 chrIV 383229 . C T 5394.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=24.63;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5394,594,0 chrIV 383320 . C T 5803.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=22.58;SB=-3.125e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:5803,648,0 chrIV 383380 . G C 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.206;DP=271;Dels=0.00;FS=2.131;HaplotypeScore=13.2534;MLEAC=2;MLEAF=1.00;MQ=34.90;MQ0=2;MQRankSum=3.675;QD=10.72;ReadPosRankSum=-0.096;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:18,250:271:99:2939,128,0 chrIV 383389 . A G 2389 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.261;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=5.1476;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=2;MQRankSum=4.021;QD=9.26;ReadPosRankSum=-1.505;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:19,239:258:89:2422,89,0 chrIV 383394 . A C 1700.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.423;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.4846;MLEAC=1;MLEAF=0.500;MQ=29.15;MQ0=2;MQRankSum=1.528;QD=8.25;ReadPosRankSum=-1.591;SB=-2.000e+03 GT:AD:DP:GQ:PL 0/1:20,186:206:44:1730,0,44 chrIV 383395 . G A 1735.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.325;DP=202;Dels=0.00;FS=1.001;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=28.46;MQ0=2;MQRankSum=3.276;QD=8.59;ReadPosRankSum=-2.839;SB=-2.140e+03 GT:AD:DP:GQ:PL 0/1:18,184:202:38:1765,0,38 chrIV 383405 . G C 1688.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;DP=240;Dels=0.00;FS=0.984;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=28.54;MQ0=2;MQRankSum=2.622;QD=7.03;ReadPosRankSum=-4.844;SB=-2.421e+03 GT:AD:DP:GQ:PL 0/1:18,222:240:42:1718,0,42 chrIV 383443 . G A 1342 SnpCluster AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.9310;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=2;QD=8.18;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:1375,156,0 chrIV 383446 . T A 721.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;DP=134;Dels=0.00;FS=3.326;HaplotypeScore=3.3536;MLEAC=1;MLEAF=0.500;MQ=28.55;MQ0=2;MQRankSum=0.453;QD=5.38;ReadPosRankSum=3.953;SB=-1.511e+03 GT:AD:DP:GQ:PL 0/1:10,124:134:44:751,0,44 chrIV 383448 . G A 763.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.693;DP=134;Dels=0.00;FS=14.625;HaplotypeScore=3.3536;MLEAC=1;MLEAF=0.500;MQ=28.55;MQ0=2;MQRankSum=1.491;QD=5.69;ReadPosRankSum=3.141;SB=-1.540e+03 GT:AD:DP:GQ:PL 0/1:8,126:134:38:793,0,38 chrIV 383449 . G A 764.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.436;DP=132;Dels=0.00;FS=14.376;HaplotypeScore=1.8857;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=2;MQRankSum=0.327;QD=5.79;ReadPosRankSum=3.279;SB=-1.542e+03 GT:AD:DP:GQ:PL 0/1:8,124:132:37:794,0,37 chrIV 383454 . C T 760.76 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.113;DP=130;Dels=0.00;FS=8.787;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=1;MQRankSum=1.664;QD=5.85;ReadPosRankSum=2.385;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:5,125:130:6:792,6,0 chrIV 383457 . A T 598.03 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;DP=115;Dels=0.00;FS=4.100;HaplotypeScore=1.7803;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=1;MQRankSum=2.103;QD=5.20;ReadPosRankSum=3.681;SB=-1.283e+03 GT:AD:DP:GQ:PL 0/1:6,109:115:20:628,0,20 chrIV 383458 . A G 558.03 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.574;DP=115;Dels=0.00;FS=4.100;HaplotypeScore=1.7803;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=1;MQRankSum=-0.263;QD=4.85;ReadPosRankSum=3.681;SB=-1.210e+03 GT:AD:DP:GQ:PL 0/1:6,109:115:19:588,0,19 chrIV 383478 . T C 440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.102;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.204;QD=6.47;ReadPosRankSum=-1.732;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:54:473,54,0 chrIV 383483 . T G 400 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.14;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:51:433,51,0 chrIV 383566 . A G 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=2.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:6:6:45,6,0 chrIV 383572 . C A 224 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=1.85;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:30:257,30,0 chrIV 383586 . T C 784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.312;DP=168;Dels=0.00;FS=6.755;HaplotypeScore=1.9445;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;MQRankSum=-2.483;QD=4.67;ReadPosRankSum=3.910;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:6,162:168:93:817,93,0 chrIV 383596 . T G 1321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.004;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.2788;MLEAC=2;MLEAF=1.00;MQ=39.47;MQ0=0;MQRankSum=1.714;QD=6.74;ReadPosRankSum=0.542;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:1354,156,0 chrIV 383859 . C T 4550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=10.547;DP=286;Dels=0.00;FS=120.673;HaplotypeScore=144.4905;MLEAC=2;MLEAF=1.00;MQ=35.75;MQ0=0;MQRankSum=6.490;QD=15.91;ReadPosRankSum=5.449;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:83,202:286:99:4550,129,0 chrIV 383874 . A G 3931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.388;DP=201;Dels=0.00;FS=26.074;HaplotypeScore=14.1147;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;MQRankSum=-1.650;QD=19.56;ReadPosRankSum=4.428;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:7,194:201:99:3931,444,0 chrIV 383933 . G A 1669.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.784;DP=369;Dels=0.00;FS=234.159;HaplotypeScore=297.1365;MLEAC=1;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=2.631;QD=4.52;ReadPosRankSum=-0.914;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:254,114:369:99:1699,0,235 chrIV 383938 . G A 1500.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.392;DP=386;Dels=0.00;FS=178.062;HaplotypeScore=696.0619;MLEAC=1;MLEAF=0.500;MQ=27.20;MQ0=0;MQRankSum=4.803;QD=3.89;ReadPosRankSum=4.427;SB=-1.150e+02 GT:AD:DP:GQ:PL 0/1:256,128:385:99:1530,0,151 chrIV 383957 . G C 1114.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;DP=565;Dels=0.03;FS=23.535;HaplotypeScore=716.7334;MLEAC=1;MLEAF=0.500;MQ=27.37;MQ0=0;MQRankSum=3.130;QD=1.97;ReadPosRankSum=4.838;SB=-6.830e+02 GT:AD:DP:GQ:PL 0/1:408,140:549:99:1144,0,927 chrIV 383965 . G A 1358.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.877;DP=480;Dels=0.04;FS=20.506;HaplotypeScore=701.2193;MLEAC=1;MLEAF=0.500;MQ=27.33;MQ0=0;MQRankSum=6.530;QD=2.83;ReadPosRankSum=-3.750;SB=-2.986e+03 GT:AD:DP:GQ:PL 0/1:169,291:462:99:1388,0,1177 chrIV 383968 . T A 1291.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.790;DP=489;Dels=0.01;FS=14.494;HaplotypeScore=350.7612;MLEAC=1;MLEAF=0.500;MQ=27.29;MQ0=0;MQRankSum=8.126;QD=2.64;ReadPosRankSum=-2.672;SB=-3.350e+03 GT:AD:DP:GQ:PL 0/1:171,315:486:99:1321,0,1214 chrIV 383975 . G C 773.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.720;DP=519;Dels=0.00;FS=243.882;HaplotypeScore=376.3707;MLEAC=1;MLEAF=0.500;MQ=27.89;MQ0=0;MQRankSum=4.439;QD=1.49;ReadPosRankSum=-4.907;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:442,75:519:99:803,0,2147 chrIV 383985 . T C 620.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.079;DP=543;Dels=0.01;FS=161.132;HaplotypeScore=405.3883;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=0;MQRankSum=6.986;QD=1.14;ReadPosRankSum=-0.854;SB=-8.460e+02 GT:AD:DP:GQ:PL 0/1:344,196:540:99:650,0,2986 chrIV 383986 . A T 583.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;DP=548;Dels=0.02;FS=139.771;HaplotypeScore=444.2373;MLEAC=1;MLEAF=0.500;MQ=28.72;MQ0=0;MQRankSum=3.379;QD=1.06;ReadPosRankSum=-2.504;SB=-9.240e+02 GT:AD:DP:GQ:PL 0/1:335,200:535:99:613,0,3227 chrIV 383989 . A G 335.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.684;DP=558;Dels=0.02;FS=20.538;HaplotypeScore=445.9226;MLEAC=1;MLEAF=0.500;MQ=28.84;MQ0=0;MQRankSum=1.777;QD=0.60;ReadPosRankSum=-8.452;SB=-2.380e+02 GT:AD:DP:GQ:PL 0/1:452,95:548:99:365,0,3757 chrIV 383994 . T C 830.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.268;DP=578;Dels=0.00;FS=58.495;HaplotypeScore=394.5021;MLEAC=1;MLEAF=0.500;MQ=29.09;MQ0=0;MQRankSum=7.101;QD=1.44;ReadPosRankSum=2.541;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:468,107:578:99:860,0,3755 chrIV 384038 . T C 2334.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.167;DP=394;Dels=0.00;FS=29.070;HaplotypeScore=80.6619;MLEAC=1;MLEAF=0.500;MQ=30.22;MQ0=0;MQRankSum=1.419;QD=5.92;ReadPosRankSum=5.398;SB=-6.110e+02 GT:AD:DP:GQ:PL 0/1:239,154:394:99:2364,0,4425 chrIV 384076 . A G 1883.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.260;DP=423;Dels=0.00;FS=137.826;HaplotypeScore=110.3556;MLEAC=1;MLEAF=0.500;MQ=28.34;MQ0=0;MQRankSum=-2.321;QD=4.45;ReadPosRankSum=-0.140;SB=-2.300e+02 GT:AD:DP:GQ:PL 0/1:283,139:423:99:1913,0,5903 chrIV 384083 . G C 5688.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.293;DP=419;Dels=0.00;FS=150.932;HaplotypeScore=154.0812;MLEAC=1;MLEAF=0.500;MQ=27.76;MQ0=0;MQRankSum=1.397;QD=13.58;ReadPosRankSum=2.097;SB=-2.449e+03 GT:AD:DP:GQ:PL 0/1:101,315:419:99:5688,0,1222 chrIV 384094 . T A 9155.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=453;Dels=0.00;FS=3.539;HaplotypeScore=127.7978;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=0;MQRankSum=-1.545;QD=20.21;ReadPosRankSum=1.678;SB=-4.752e+03 GT:AD:DP:GQ:PL 1/1:1,452:453:99:9155,1081,0 chrIV 384100 . G A 75.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.692;DP=439;Dels=0.00;FS=164.211;HaplotypeScore=122.4644;MLEAC=1;MLEAF=0.500;MQ=27.80;MQ0=0;MQRankSum=-1.495;QD=0.17;ReadPosRankSum=-3.613;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:375,63:439:99:105,0,6864 chrIV 384103 . G A 3422.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.942;DP=436;Dels=0.00;FS=68.752;HaplotypeScore=68.0953;MLEAC=1;MLEAF=0.500;MQ=27.94;MQ0=0;MQRankSum=1.799;QD=7.85;ReadPosRankSum=-2.569;SB=-1.501e+03 GT:AD:DP:GQ:PL 0/1:235,199:436:99:3422,0,3513 chrIV 384171 . A G 550.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.511;DP=326;Dels=0.00;FS=196.845;HaplotypeScore=112.1661;MLEAC=1;MLEAF=0.500;MQ=29.47;MQ0=0;MQRankSum=-5.692;QD=1.69;ReadPosRankSum=-0.764;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:242,84:326:99:580,0,4155 chrIV 384189 . G A 4219.01 SnpCluster AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=47.3559;MLEAC=2;MLEAF=1.00;MQ=29.18;MQ0=0;QD=17.80;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4219,471,0 chrIV 384190 . G A 606.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.120;DP=234;Dels=0.00;FS=311.395;HaplotypeScore=47.3559;MLEAC=1;MLEAF=0.500;MQ=28.94;MQ0=0;MQRankSum=-3.604;QD=2.59;ReadPosRankSum=1.535;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:144,90:234:99:636,0,2434 chrIV 384191 . C G 3999.01 SnpCluster AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=47.3559;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;QD=17.31;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,225:231:99:3999,462,0 chrIV 384196 . T C 551.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.061;DP=234;Dels=0.00;FS=366.532;HaplotypeScore=36.6939;MLEAC=1;MLEAF=0.500;MQ=28.91;MQ0=0;MQRankSum=-3.033;QD=2.35;ReadPosRankSum=2.140;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,82:234:99:581,0,2474 chrIV 384202 . G A 622.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.845;DP=218;Dels=0.00;FS=426.935;HaplotypeScore=25.6768;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=0;MQRankSum=-3.878;QD=2.85;ReadPosRankSum=3.656;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,82:218:99:652,0,2196 chrIV 384204 . C T 3556.01 SnpCluster AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=28.5763;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=17.10;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3556,396,0 chrIV 384215 . G A 633.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.296;DP=162;Dels=0.00;FS=230.840;HaplotypeScore=96.4610;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=0;MQRankSum=-0.540;QD=3.91;ReadPosRankSum=7.717;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,75:162:99:663,0,1368 chrIV 384216 . A T 628.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.428;DP=160;Dels=0.00;FS=253.112;HaplotypeScore=97.4476;MLEAC=1;MLEAF=0.500;MQ=28.65;MQ0=0;MQRankSum=0.553;QD=3.93;ReadPosRankSum=7.482;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,75:160:99:658,0,1329 chrIV 384219 . C T 16.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.669;DP=149;Dels=0.00;FS=85.630;HaplotypeScore=144.5016;MLEAC=1;MLEAF=0.500;MQ=28.06;MQ0=0;MQRankSum=-1.524;QD=0.11;ReadPosRankSum=-6.214;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,16:149:46:46,0,1587 chrIV 384224 . G T 688.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;DP=137;Dels=0.00;FS=141.359;HaplotypeScore=136.7220;MLEAC=1;MLEAF=0.500;MQ=27.50;MQ0=0;MQRankSum=1.684;QD=5.02;ReadPosRankSum=7.449;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,75:137:99:718,0,794 chrIV 384225 . G A 609.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.267;DP=134;Dels=0.00;FS=63.979;HaplotypeScore=138.7399;MLEAC=1;MLEAF=0.500;MQ=27.69;MQ0=0;MQRankSum=-1.747;QD=4.54;ReadPosRankSum=-7.167;SB=-3.750e+02 GT:AD:DP:GQ:PL 0/1:81,53:134:99:639,0,797 chrIV 384235 . G A 656.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.914;DP=98;Dels=0.01;FS=17.874;HaplotypeScore=26.0604;MLEAC=1;MLEAF=0.500;MQ=27.45;MQ0=0;MQRankSum=3.632;QD=6.69;ReadPosRankSum=2.108;SB=-7.701e+01 GT:AD:DP:GQ:PL 0/1:31,66:97:99:686,0,293 chrIV 384237 . T A,C 967.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=18.1442;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.03;MQ0=0;QD=10.74;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/2:0,62,27:90:99:1027,312,225,715,0,667 chrIV 384240 . T C 1016 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.930;DP=92;Dels=0.00;FS=32.573;HaplotypeScore=20.9213;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=0;MQRankSum=-1.119;QD=11.04;ReadPosRankSum=2.325;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:5,87:92:85:1049,85,0 chrIV 384244 . A T 479.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720;DP=114;Dels=0.00;FS=35.808;HaplotypeScore=22.6086;MLEAC=1;MLEAF=0.500;MQ=27.77;MQ0=0;MQRankSum=0.649;QD=4.20;ReadPosRankSum=3.041;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,56:114:99:509,0,463 chrIV 384256 . A G 727.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;DP=83;Dels=0.00;FS=49.369;HaplotypeScore=71.2044;MLEAC=1;MLEAF=0.500;MQ=27.47;MQ0=0;MQRankSum=-1.828;QD=8.76;ReadPosRankSum=4.708;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:21,61:83:99:757,0,138 chrIV 384257 . T C 981 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=71.2044;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;QD=11.82;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,71:83:99:1014,123,0 chrIV 384274 . T A 239.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;DP=178;Dels=0.00;FS=96.121;HaplotypeScore=82.1609;MLEAC=1;MLEAF=0.500;MQ=29.05;MQ0=0;MQRankSum=3.945;QD=1.34;ReadPosRankSum=2.581;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,48:178:99:269,0,2123 chrIV 384275 . G A 190.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.020;DP=188;Dels=0.00;FS=77.940;HaplotypeScore=87.6817;MLEAC=1;MLEAF=0.500;MQ=29.30;MQ0=0;MQRankSum=2.224;QD=1.01;ReadPosRankSum=3.667;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,41:188:99:220,0,2226 chrIV 384281 . C G 178.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.084;DP=204;Dels=0.00;FS=39.224;HaplotypeScore=97.5677;MLEAC=1;MLEAF=0.500;MQ=30.36;MQ0=0;MQRankSum=2.561;QD=0.87;ReadPosRankSum=1.929;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,54:204:99:208,0,2435 chrIV 384283 . T A 178.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264;DP=210;Dels=0.00;FS=41.039;HaplotypeScore=105.1135;MLEAC=1;MLEAF=0.500;MQ=30.54;MQ0=0;MQRankSum=2.587;QD=0.85;ReadPosRankSum=2.389;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:156,54:210:99:208,0,2756 chrIV 384299 . C A 294.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.110;DP=279;Dels=0.00;FS=127.072;HaplotypeScore=159.6216;MLEAC=1;MLEAF=0.500;MQ=30.54;MQ0=0;MQRankSum=1.508;QD=1.05;ReadPosRankSum=-0.407;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:180,61:279:99:324,0,3134 chrIV 384317 . C G 5398.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=93.9553;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;QD=17.08;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,315:316:99:5398,621,0 chrIV 384384 . C T 642.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.468;DP=166;Dels=0.00;FS=15.744;HaplotypeScore=512.8755;MLEAC=1;MLEAF=0.500;MQ=27.59;MQ0=0;MQRankSum=0.329;QD=3.87;ReadPosRankSum=4.458;SB=-2.190e+02 GT:AD:DP:GQ:PL 0/1:118,48:166:99:672,0,619 chrIV 384389 . G C 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.749;DP=157;Dels=0.00;FS=30.247;HaplotypeScore=319.5853;MLEAC=1;MLEAF=0.500;MQ=27.31;MQ0=0;MQRankSum=1.079;QD=0.15;ReadPosRankSum=3.634;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:124,33:157:53:53,0,1279 chrIV 384397 . G A 104.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.380;DP=120;Dels=0.00;FS=16.869;HaplotypeScore=175.6311;MLEAC=1;MLEAF=0.500;MQ=27.45;MQ0=0;MQRankSum=2.254;QD=0.87;ReadPosRankSum=4.642;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,15:120:99:134,0,1079 chrIV 384399 . C A 100.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.516;DP=119;Dels=0.00;FS=16.852;HaplotypeScore=160.7653;MLEAC=1;MLEAF=0.500;MQ=27.44;MQ0=0;MQRankSum=2.025;QD=0.84;ReadPosRankSum=4.169;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,14:119:99:130,0,1142 chrIV 384403 . T G 18.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;DP=114;Dels=0.01;FS=16.895;HaplotypeScore=67.0107;MLEAC=1;MLEAF=0.500;MQ=27.54;MQ0=0;MQRankSum=-0.139;QD=0.16;ReadPosRankSum=4.689;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,16:113:48:48,0,1058 chrIV 384406 . A T 127.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.708;DP=105;Dels=0.00;FS=11.732;HaplotypeScore=76.8155;MLEAC=1;MLEAF=0.500;MQ=27.32;MQ0=0;MQRankSum=1.468;QD=1.21;ReadPosRankSum=3.748;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,14:105:99:157,0,855 chrIV 384413 . G T 340.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.956;DP=56;Dels=0.00;FS=2.295;HaplotypeScore=44.4234;MLEAC=1;MLEAF=0.500;MQ=26.14;MQ0=0;MQRankSum=0.413;QD=6.07;ReadPosRankSum=-3.332;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:28,24:56:99:370,0,280 chrIV 384415 . A G 77.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.571;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=42.2791;MLEAC=1;MLEAF=0.500;MQ=26.05;MQ0=0;MQRankSum=2.503;QD=1.51;ReadPosRankSum=1.340;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,10:51:99:107,0,531 chrIV 384419 . A G 74.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.317;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=10.5197;MLEAC=1;MLEAF=0.500;MQ=27.31;MQ0=0;MQRankSum=-1.970;QD=2.55;ReadPosRankSum=1.616;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:12,17:29:99:104,0,172 chrIV 384450 . G A 248.11 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.248;DP=63;Dels=0.05;FS=5.740;HaplotypeScore=95.4662;MLEAC=1;MLEAF=0.500;MQ=28.54;MQ0=0;MQRankSum=1.045;QD=3.94;ReadPosRankSum=-1.897;SB=-1.140e-01 GT:AD:DP:GQ:PL 0/1:16,44:60:13:278,0,13 chrIV 384455 . A G 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.059;DP=76;Dels=0.00;FS=7.047;HaplotypeScore=79.9615;MLEAC=1;MLEAF=0.500;MQ=28.24;MQ0=0;MQRankSum=1.918;QD=0.26;ReadPosRankSum=-2.427;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:61,15:76:50:50,0,333 chrIV 384475 . A T 81.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;DP=105;Dels=0.00;FS=102.640;HaplotypeScore=55.1867;MLEAC=1;MLEAF=0.500;MQ=28.45;MQ0=0;MQRankSum=-0.881;QD=0.77;ReadPosRankSum=-5.650;SB=-4.130e+02 GT:AD:DP:GQ:PL 0/1:53,52:105:99:111,0,440 chrIV 384504 . G A 91.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.851;DP=117;Dels=0.00;FS=72.338;HaplotypeScore=198.9396;MLEAC=1;MLEAF=0.500;MQ=28.42;MQ0=0;MQRankSum=-1.747;QD=0.78;ReadPosRankSum=6.659;SB=-3.980e+02 GT:AD:DP:GQ:PL 0/1:58,59:117:99:121,0,336 chrIV 384529 . T G 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.616;DP=113;Dels=0.04;FS=65.189;HaplotypeScore=320.0098;MLEAC=1;MLEAF=0.500;MQ=32.76;MQ0=0;MQRankSum=0.675;QD=0.60;ReadPosRankSum=1.357;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,8:109:98:98,0,286 chrIV 384540 . G A 63.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.184;DP=110;Dels=0.00;FS=115.083;HaplotypeScore=31.8527;MLEAC=1;MLEAF=0.500;MQ=38.08;MQ0=0;MQRankSum=-2.729;QD=0.57;ReadPosRankSum=-1.993;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,17:110:93:93,0,969 chrIV 384581 . T G 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=167;Dels=0.00;FS=2.485;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.62;MQ0=0;MQRankSum=-0.006;QD=16.93;ReadPosRankSum=2.669;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:2860,327,0 chrIV 384602 . T G 3505.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;QD=19.15;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3505,396,0 chrIV 384607 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.8898;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;QD=19.10;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3648,417,0 chrIV 384692 . G A 7582.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=24.0671;MLEAC=2;MLEAF=1.00;MQ=31.07;MQ0=0;QD=24.54;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,307:309:99:7582,831,0 chrIV 384748 . A G 8011.01 PASS AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=9.6327;MLEAC=2;MLEAF=1.00;MQ=34.11;MQ0=0;QD=23.77;SB=-2.943e+03 GT:AD:DP:GQ:PL 1/1:0,335:337:99:8011,924,0 chrIV 384757 . G A 8311.01 PASS AC=2;AF=1.00;AN=2;DP=347;Dels=0.00;FS=0.000;HaplotypeScore=17.3215;MLEAC=2;MLEAF=1.00;MQ=34.78;MQ0=0;QD=23.95;SB=-3.320e+03 GT:AD:DP:GQ:PL 1/1:0,342:347:99:8311,930,0 chrIV 384792 . A C 8483.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=374;Dels=0.00;FS=3.962;HaplotypeScore=26.2048;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=0;MQRankSum=0.528;QD=22.68;ReadPosRankSum=1.713;SB=-3.680e+03 GT:AD:DP:GQ:PL 1/1:1,370:374:99:8483,975,0 chrIV 384869 . G C 4934.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=19.27;SB=-3.064e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:4934,578,0 chrIV 384870 . A T 4874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=251;Dels=0.00;FS=6.356;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;MQRankSum=-0.944;QD=19.42;ReadPosRankSum=2.420;SB=-3.069e+03 GT:AD:DP:GQ:PL 1/1:2,249:251:99:4874,563,0 chrIV 384884 . G C 3402.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=0;QD=18.10;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3402,401,0 chrIV 384885 . A T 3321.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=0;QD=18.15;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3321,390,0 chrIV 384899 . G C 1978 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=0;QD=16.21;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2011,228,0 chrIV 384900 . A T 1960 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=0;QD=16.07;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1993,228,0 chrIV 384914 . G C 1306 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=0;QD=15.01;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1339,153,0 chrIV 384915 . A T 1307 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=0;QD=15.02;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1340,153,0 chrIV 384929 . G C 516 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=11.47;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:63:549,63,0 chrIV 384930 . A T 509 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=11.31;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:63:542,63,0 chrIV 384944 . G C 104.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.733;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.271;QD=10.43;ReadPosRankSum=1.733;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:2,8:10:15:137,15,0 chrIV 384945 . A T 90.27 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.382;QD=7.52;ReadPosRankSum=2.262;SB=-7.102e+01 GT:AD:DP:GQ:PL 0/1:4,8:12:9:120,0,9 chrIV 384959 . G C 235.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;DP=35;Dels=0.00;FS=10.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-1.093;QD=6.71;ReadPosRankSum=4.021;SB=-1.800e+02 GT:AD:DP:GQ:PL 0/1:7,28:35:61:265,0,61 chrIV 384960 . A T 265.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;DP=39;Dels=0.00;FS=13.360;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.171;QD=6.80;ReadPosRankSum=4.243;SB=-1.999e+02 GT:AD:DP:GQ:PL 0/1:11,28:39:84:295,0,84 chrIV 384974 . G C 673.79 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;DP=80;Dels=0.00;FS=27.729;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-1.002;QD=8.42;ReadPosRankSum=4.611;SB=-6.768e+02 GT:AD:DP:GQ:PL 0/1:8,72:80:4:703,0,4 chrIV 384975 . A T 666.42 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.841;DP=80;Dels=0.00;FS=27.729;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.393;QD=8.33;ReadPosRankSum=4.611;SB=-6.524e+02 GT:AD:DP:GQ:PL 0/1:8,72:80:7:696,0,7 chrIV 384989 . G C 1170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.455;DP=136;Dels=0.00;FS=20.230;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;MQRankSum=-0.694;QD=8.60;ReadPosRankSum=5.483;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:11,125:136:37:1203,37,0 chrIV 384990 . A T 1107.52 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.017;DP=136;Dels=0.00;FS=20.230;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=28.86;MQ0=0;MQRankSum=-0.279;QD=8.14;ReadPosRankSum=5.483;SB=-1.367e+03 GT:AD:DP:GQ:PL 0/1:11,125:136:6:1137,0,6 chrIV 385004 . G C 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.076;DP=242;Dels=0.00;FS=2.816;HaplotypeScore=1.9650;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;MQRankSum=0.218;QD=12.68;ReadPosRankSum=2.429;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:2,240:242:99:3102,339,0 chrIV 385005 . A T 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.024;DP=243;Dels=0.00;FS=2.816;HaplotypeScore=1.9650;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;MQRankSum=1.456;QD=13.14;ReadPosRankSum=2.429;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:3,240:243:99:3225,333,0 chrIV 385019 . G C 6450.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.551;DP=614;Dels=0.00;FS=5.475;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;MQRankSum=-1.716;QD=10.50;ReadPosRankSum=2.989;SB=-6.192e+03 GT:AD:DP:GQ:PL 1/1:3,611:614:99:6450,755,0 chrIV 385020 . A T 6730.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.535;DP=614;Dels=0.00;FS=5.475;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;MQRankSum=1.361;QD=10.96;ReadPosRankSum=2.989;SB=-6.434e+03 GT:AD:DP:GQ:PL 1/1:3,611:614:99:6730,762,0 chrIV 385034 . G C 7275.01 filter AC=2;AF=1.00;AN=2;DP=686;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=10.60;SB=-7.050e+03 GT:AD:DP:GQ:PL 1/1:0,686:686:99:7275,857,0 chrIV 385049 . G C 7780.01 filter AC=2;AF=1.00;AN=2;DP=699;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=11.13;SB=-6.932e+03 GT:AD:DP:GQ:PL 1/1:0,699:699:99:7780,908,0 chrIV 385064 . G C 8075.01 filter AC=2;AF=1.00;AN=2;DP=701;Dels=0.00;FS=0.000;HaplotypeScore=4.2205;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=0;QD=11.52;SB=-6.910e+03 GT:AD:DP:GQ:PL 1/1:0,698:701:99:8075,938,0 chrIV 385079 . A C 8687.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=693;Dels=0.00;FS=0.000;HaplotypeScore=8.9928;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=0;MQRankSum=0.352;QD=12.54;ReadPosRankSum=2.287;SB=-7.020e+03 GT:AD:DP:GQ:PL 1/1:2,690:693:99:8687,1004,0 chrIV 385094 . A C 2342.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-12.297;DP=594;Dels=0.00;FS=5.514;HaplotypeScore=6.4130;MLEAC=1;MLEAF=0.500;MQ=32.55;MQ0=0;MQRankSum=-0.421;QD=3.94;ReadPosRankSum=-15.092;SB=-2.344e+03 GT:AD:DP:GQ:PL 0/1:292,301:594:99:2372,0,3896 chrIV 385228 . G A 5441.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;QD=23.76;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5441,597,0 chrIV 385750 . T C 4080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=191;Dels=0.00;FS=5.229;HaplotypeScore=12.2286;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.511;QD=21.36;ReadPosRankSum=1.641;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4080,465,0 chrIV 385961 . G A 831 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=50.3331;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;QD=9.89;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:864,102,0 chrIV 385972 . C T 448 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=48.1069;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=4.82;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:54:481,54,0 chrIV 386031 . G T 2514 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=14.0912;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.05;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2547,282,0 chrIV 386094 . T A 2052 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=19.00;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2085,231,0 chrIV 386116 . T G 1613 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=16.13;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1646,192,0 chrIV 386121 . G A 1535 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;QD=15.51;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1568,174,0 chrIV 386135 . T C 1290 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.64;MQ0=0;QD=13.44;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1323,153,0 chrIV 386164 . A G 125.06 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=39.27;MQ0=0;QD=1.47;SB=-9.301e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:21:158,21,0 chrIV 386507 . G A 2666 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.50;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2699,294,0 chrIV 386517 . T A 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=4.671;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=0.953;QD=20.15;ReadPosRankSum=1.678;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2632,285,0 chrIV 386603 . C T 1885 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.92;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1918,210,0 chrIV 386657 . G A 1800 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.43;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1833,201,0 chrIV 386802 . T C 1146 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=17.63;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1179,135,0 chrIV 387010 . A G 1258 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=18.78;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1291,147,0 chrIV 387014 . G A 1201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.325;QD=16.68;ReadPosRankSum=0.051;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,67:72:99:1234,138,0 chrIV 387052 . T C 1924 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=18.15;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1957,231,0 chrIV 387294 . G A 2168 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.7451;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.35;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2201,234,0 chrIV 387371 . C T 2287 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.58;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2320,249,0 chrIV 387387 . C G 2659 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.44;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2692,300,0 chrIV 387713 . T C 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.520;QD=15.02;ReadPosRankSum=1.694;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:2752,315,0 chrIV 388221 . G T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.7713;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3853,435,0 chrIV 388305 . A G 2972 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.22;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3005,342,0 chrIV 388338 . G T 2820 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2853,321,0 chrIV 388521 . T C 1945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=98;Dels=0.00;FS=8.355;HaplotypeScore=13.4253;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.423;QD=19.85;ReadPosRankSum=2.398;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:2,94:98:99:1978,228,0 chrIV 388668 . A G 2794 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.83;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2827,312,0 chrIV 388871 . A G 1500 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=15.15;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1533,174,0 chrIV 388942 . A T 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.210;DP=123;Dels=0.00;FS=6.722;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=0.410;QD=19.76;ReadPosRankSum=2.410;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2464,276,0 chrIV 388954 . G A 2487 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=19.58;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2520,285,0 chrIV 389027 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.51;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3136,333,0 chrIV 389375 . T G 4801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=213;Dels=0.00;FS=3.284;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.700;QD=22.54;ReadPosRankSum=0.285;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4801,540,0 chrIV 390027 . C A 3873.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3873,420,0 chrIV 390086 . T C 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.6130;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-1.687;QD=22.90;ReadPosRankSum=1.710;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3550,402,0 chrIV 390120 . A T 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=1.394;QD=23.45;ReadPosRankSum=1.669;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3846,417,0 chrIV 390144 . G A 3374.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.63;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3374,381,0 chrIV 390297 . G A 1797 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.66;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1830,195,0 chrIV 390366 . A G 1069 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.974;QD=16.70;ReadPosRankSum=1.678;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1102,129,0 chrIV 390440 . T A 12.29 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.383;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=10.9090;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.365;QD=1.23;ReadPosRankSum=-1.568;SB=-2.818e-02 GT:AD:DP:GQ:PL 0/1:6,4:10:20:42,0,20 chrIV 390450 . G A 93.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.896;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=13.8886;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;MQRankSum=-0.597;QD=8.48;ReadPosRankSum=-0.597;SB=-2.526e+01 GT:AD:DP:GQ:PL 1/1:4,7:11:15:126,15,0 chrIV 390459 . G A 80.27 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;DP=14;Dels=0.00;FS=3.358;HaplotypeScore=11.4913;MLEAC=1;MLEAF=0.500;MQ=37.84;MQ0=0;MQRankSum=1.954;QD=5.73;ReadPosRankSum=-2.281;SB=-2.716e-01 GT:AD:DP:GQ:PL 0/1:6,7:14:9:110,0,9 chrIV 390495 . A G 573 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.087;DP=45;Dels=0.00;FS=8.751;HaplotypeScore=2.9698;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;MQRankSum=0.751;QD=12.73;ReadPosRankSum=1.018;SB=-3.775e-03 GT:AD:DP:GQ:PL 1/1:6,39:45:69:606,69,0 chrIV 390498 . A G 617 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.518;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;MQRankSum=-0.777;QD=13.41;ReadPosRankSum=1.146;SB=-6.301e-03 GT:AD:DP:GQ:PL 1/1:5,39:46:75:650,75,0 chrIV 390501 . G A 567 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.097;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=38.21;MQ0=0;MQRankSum=-0.259;QD=11.57;ReadPosRankSum=0.857;SB=0.062 GT:AD:DP:GQ:PL 1/1:4,41:49:48:600,48,0 chrIV 390566 . C T 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;DP=120;Dels=0.03;FS=0.000;HaplotypeScore=313.1383;MLEAC=1;MLEAF=0.500;MQ=48.80;MQ0=0;MQRankSum=0.716;QD=0.26;ReadPosRankSum=2.802;SB=-3.002e+01 GT:AD:DP:GQ:PL 0/1:3,114:117:61:61,0,61 chrIV 390744 . A G 4225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=201;Dels=0.00;FS=2.988;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=0.850;QD=21.02;ReadPosRankSum=2.425;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:2,196:201:99:4225,492,0 chrIV 390756 . T A 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=0.971;QD=21.93;ReadPosRankSum=2.175;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4583,482,0 chrIV 391021 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.81;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3133,348,0 chrIV 391128 . T C 2069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=101;Dels=0.00;FS=3.098;HaplotypeScore=9.9139;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.797;QD=20.49;ReadPosRankSum=1.663;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2102,240,0 chrIV 391149 . G C 2145 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.62;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2178,249,0 chrIV 391193 . T C 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.547;QD=19.59;ReadPosRankSum=1.671;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2286,258,0 chrIV 391314 . A G 2218 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.12;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2251,258,0 chrIV 391712 . T C 3697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=3.251;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.027;QD=22.01;ReadPosRankSum=1.711;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3697,420,0 chrIV 392020 . A G 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.258;QD=20.12;ReadPosRankSum=1.713;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3642,423,0 chrIV 392287 . T C 2534 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.7269;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.84;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,112:116:99:2567,294,0 chrIV 392631 . A G 4265.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.8958;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.93;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4265,492,0 chrIV 392938 . C A 4514.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.8381;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.81;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4514,486,0 chrIV 392959 . C G 3568.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=20.04;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3568,417,0 chrIV 393052 . T C 4786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.695;QD=22.90;ReadPosRankSum=1.715;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4786,546,0 chrIV 393421 . A G 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=181;Dels=0.01;FS=5.237;HaplotypeScore=7.2843;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.499;QD=18.30;ReadPosRankSum=1.693;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,176:180:99:3312,393,0 chrIV 393423 . T C 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=180;Dels=0.00;FS=2.785;HaplotypeScore=6.4956;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-1.767;QD=19.63;ReadPosRankSum=2.313;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3533,396,0 chrIV 393566 . C T 4106.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=18.3151;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4106,438,0 chrIV 393651 . T C 4777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=218;Dels=0.00;FS=3.700;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-1.669;QD=21.91;ReadPosRankSum=1.653;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4777,540,0 chrIV 394128 . A T 3760.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.95;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3760,405,0 chrIV 394249 . C T 6479.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:6479,714,0 chrIV 394339 . T C 5580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=249;Dels=0.00;FS=5.920;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.149;QD=22.41;ReadPosRankSum=2.899;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:3,246:249:99:5580,642,0 chrIV 394519 . A G 4444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.168;DP=218;Dels=0.00;FS=2.577;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.648;QD=20.39;ReadPosRankSum=2.393;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4444,522,0 chrIV 394555 . C T 5330.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=20.5254;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.78;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,231:234:99:5330,591,0 chrIV 394798 . A C 3441.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3441,390,0 chrIV 395086 . T C 3581.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.23;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3581,417,0 chrIV 395248 . G A 2995 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3028,336,0 chrIV 395530 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3133,345,0 chrIV 395767 . A T 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=131;Dels=0.00;FS=2.932;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.098;QD=22.63;ReadPosRankSum=2.393;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2998,324,0 chrIV 395885 . C T 2965 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.64;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2998,327,0 chrIV 396610 . C A 2811 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.6815;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.03;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2844,309,0 chrIV 396835 . A G 3131 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.85;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3164,357,0 chrIV 396862 . T C 2319 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.51;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2352,270,0 chrIV 396925 . T C 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=132;Dels=0.00;FS=3.497;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.102;QD=21.95;ReadPosRankSum=1.706;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2930,330,0 chrIV 397012 . C T 3435.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.74;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3435,381,0 chrIV 397251 . A G 2842 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.92;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2875,330,0 chrIV 397272 . T G 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=132;Dels=0.00;FS=6.969;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.084;QD=20.86;ReadPosRankSum=2.393;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2786,315,0 chrIV 397864 . C T 3300.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.74;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3300,354,0 chrIV 397881 . A G 3033 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=21.82;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3066,348,0 chrIV 397902 . A G 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=135;Dels=0.00;FS=2.876;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.848;QD=19.73;ReadPosRankSum=2.412;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:2,130:135:99:2697,312,0 chrIV 398236 . C G 3303.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.59;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3303,372,0 chrIV 398297 . C A 2345 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=24.18;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2378,261,0 chrIV 398518 . T C 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.147;DP=131;Dels=0.00;FS=3.035;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.861;QD=19.69;ReadPosRankSum=2.336;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2613,294,0 chrIV 398523 . T G 2477 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=19.20;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2510,282,0 chrIV 398655 . G C 3372.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=22.63;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3372,387,0 chrIV 398669 . A G 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=5.286;HaplotypeScore=6.8111;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.843;QD=21.53;ReadPosRankSum=1.641;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3273,366,0 chrIV 398697 . A G 3136 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.2399;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.60;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3169,363,0 chrIV 398734 . T C 3637.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.02;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3637,417,0 chrIV 398862 . C T 4707.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.69;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4707,519,0 chrIV 398875 . A C 4514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.287;DP=214;Dels=0.00;FS=13.288;HaplotypeScore=12.9784;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=1.426;QD=21.09;ReadPosRankSum=3.402;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:4,207:213:99:4514,510,0 chrIV 398907 . T C 3897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=197;Dels=0.00;FS=3.000;HaplotypeScore=16.5300;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.143;QD=19.78;ReadPosRankSum=2.412;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:3897,447,0 chrIV 399007 . C T 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.408;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.3908;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.622;QD=22.78;ReadPosRankSum=1.666;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3645,379,0 chrIV 399044 . A G 4221.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.54;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4221,471,0 chrIV 399193 . A G 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=128;Dels=0.00;FS=3.079;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-0.271;QD=21.19;ReadPosRankSum=1.678;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2745,318,0 chrIV 399202 . C T 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.076;QD=21.38;ReadPosRankSum=1.554;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2941,324,0 chrIV 399900 . C T 5587.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5587,615,0 chrIV 400242 . A T 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.556;QD=21.80;ReadPosRankSum=1.647;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3532,387,0 chrIV 400395 . G A 4585.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.37;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4585,495,0 chrIV 400404 . G C 4097.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.49;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4097,471,0 chrIV 400491 . T C 3052 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.30;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3085,351,0 chrIV 400709 . T A 1519 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.67;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1552,168,0 chrIV 400784 . C A 1106 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1139,129,0 chrIV 400905 . G T 1496 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.33;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1529,171,0 chrIV 401117 . A G 2658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=116;Dels=0.00;FS=3.087;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.185;QD=22.91;ReadPosRankSum=1.671;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2691,303,0 chrIV 401636 . T C 3172 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.1034;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.99;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3205,369,0 chrIV 402197 . A G 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=138;Dels=0.00;FS=3.238;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.822;QD=20.68;ReadPosRankSum=1.707;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2887,339,0 chrIV 402371 . A G 2935 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2968,348,0 chrIV 402662 . T C 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.102;QD=23.27;ReadPosRankSum=1.707;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3221,360,0 chrIV 402856 . C A 4544.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=16.4489;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.18;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4544,489,0 chrIV 403061 . G A 4486.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.1983;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.46;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4486,489,0 chrIV 403952 . T C 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=153;Dels=0.00;FS=6.107;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.582;QD=22.03;ReadPosRankSum=2.401;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3370,387,0 chrIV 404304 . C T 2801 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.54;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2834,306,0 chrIV 404333 . C T 2896 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.62;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2929,315,0 chrIV 404459 . A T 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.233;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.443;QD=24.97;ReadPosRankSum=1.703;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3030,333,0 chrIV 404690 . A G 3821.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.03;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3821,429,0 chrIV 404730 . A C 3168 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.00;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3201,378,0 chrIV 404818 . G A 3382.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3382,375,0 chrIV 404883 . A G 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=165;Dels=0.00;FS=3.034;HaplotypeScore=9.8656;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.322;QD=21.85;ReadPosRankSum=2.420;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3605,408,0 chrIV 405116 . C A 2052 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=20.52;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2085,234,0 chrIV 405143 . A G 1531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.726;DP=85;Dels=0.00;FS=2.370;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;MQRankSum=-1.672;QD=18.01;ReadPosRankSum=3.726;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:5,80:85:99:1564,180,0 chrIV 405154 . C G 1391 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=17.39;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1424,165,0 chrIV 405160 . T C 1281 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=17.31;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1314,150,0 chrIV 405303 . A T 1898 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.03;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1931,213,0 chrIV 405482 . A G 1892 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.73;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1925,222,0 chrIV 405521 . T C 2486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=130;Dels=0.00;FS=6.261;HaplotypeScore=14.2778;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.581;QD=19.12;ReadPosRankSum=2.412;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2519,282,0 chrIV 405794 . A G 4478.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.08;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4478,504,0 chrIV 406099 . C T 4155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=186;Dels=0.00;FS=4.476;HaplotypeScore=8.5262;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.515;QD=22.34;ReadPosRankSum=0.234;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4155,456,0 chrIV 406118 . C T 3705.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.67;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3705,411,0 chrIV 406262 . T C 3026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7812;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.201;QD=22.09;ReadPosRankSum=1.682;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3059,357,0 chrIV 406301 . A G 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=14.0153;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.902;QD=21.55;ReadPosRankSum=1.618;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2662,303,0 chrIV 406385 . C T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.4213;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.07;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3477,390,0 chrIV 406814 . T C 3915.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.2725;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.99;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3915,441,0 chrIV 406847 . G C 3383.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.69;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3383,402,0 chrIV 406901 . A T 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=144;Dels=0.00;FS=2.947;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.146;QD=21.42;ReadPosRankSum=2.312;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3118,339,0 chrIV 406981 . A G 3129 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4965;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.00;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3162,357,0 chrIV 407051 . T C 2759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.049;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.1203;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.042;QD=19.03;ReadPosRankSum=1.623;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:3,141:145:99:2792,299,0 chrIV 407060 . A G 2877 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.57;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2910,333,0 chrIV 407223 . G C 3302.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6681;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.46;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3302,381,0 chrIV 407286 . C G 3751.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.4381;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.43;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,171:175:99:3751,420,0 chrIV 407982 . G A 1580 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.94;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1613,180,0 chrIV 408038 . C T 1433 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.77;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1466,165,0 chrIV 408128 . T A 1238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=5.5985;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=1.155;QD=15.67;ReadPosRankSum=1.466;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1271,138,0 chrIV 408131 . C T 1271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=78;Dels=0.00;FS=3.757;HaplotypeScore=6.3872;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.638;QD=16.29;ReadPosRankSum=1.368;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,75:78:99:1304,141,0 chrIV 408225 . G A 2058 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.12;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2091,228,0 chrIV 408416 . T A 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=131;Dels=0.00;FS=5.428;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.346;QD=22.70;ReadPosRankSum=2.916;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:3007,324,0 chrIV 408443 . T C 2989 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.5162;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.16;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3022,354,0 chrIV 408706 . T C 5100.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.2526;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.27;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5100,594,0 chrIV 408811 . A T 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.2712;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=0.650;QD=19.77;ReadPosRankSum=2.293;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3137,354,0 chrIV 408812 . G A 3079 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=4.2712;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=19.74;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3112,351,0 chrIV 408877 . G A 3615.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.31;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3615,390,0 chrIV 408894 . T G 3387.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=20.04;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3387,384,0 chrIV 409009 . T C 2719 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9675;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.58;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2752,321,0 chrIV 409152 . A G 2989 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.82;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3022,345,0 chrIV 409586 . T A 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=186;Dels=0.00;FS=2.578;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-0.659;QD=21.34;ReadPosRankSum=2.962;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:3970,447,0 chrIV 409588 . A C 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=186;Dels=0.02;FS=4.472;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-1.637;QD=20.49;ReadPosRankSum=1.713;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3812,438,0 chrIV 409597 . C A 3798.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.2653;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.64;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3798,417,0 chrIV 409681 . A G 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=3.477;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.504;QD=22.93;ReadPosRankSum=1.649;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3829,441,0 chrIV 409788 . T C 4085.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.01;FS=0.000;HaplotypeScore=14.4408;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.39;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4085,474,0 chrIV 409894 . A G 3467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=160;Dels=0.00;FS=3.027;HaplotypeScore=12.3214;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.801;QD=21.67;ReadPosRankSum=2.387;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3467,399,0 chrIV 409928 . C A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=15.7087;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.96;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3404,366,0 chrIV 409954 . C T 3012 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.3272;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=21.67;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3045,336,0 chrIV 410007 . G C 2461 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=17.21;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2494,285,0 chrIV 410017 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=17.82;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2403,273,0 chrIV 410042 . C A 2922 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=19.88;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2955,318,0 chrIV 410087 . T G 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=3.041;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=1.054;QD=20.99;ReadPosRankSum=1.708;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3055,348,0 chrIV 410282 . G T 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=137;Dels=0.00;FS=3.347;HaplotypeScore=6.7093;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=-1.448;QD=23.89;ReadPosRankSum=1.603;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3273,366,0 chrIV 410322 . T C 3322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.096;DP=154;Dels=0.00;FS=6.340;HaplotypeScore=12.2255;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;MQRankSum=0.699;QD=21.57;ReadPosRankSum=1.759;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3322,369,0 chrIV 410359 . G T 3034 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=20.09;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3067,348,0 chrIV 410364 . G A 3009 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1291;MLEAC=2;MLEAF=1.00;MQ=43.62;MQ0=0;QD=19.04;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3042,345,0 chrIV 410375 . T C 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8012;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;MQRankSum=-1.002;QD=18.72;ReadPosRankSum=0.972;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3084,344,0 chrIV 410440 . C T 2733 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=18.98;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2766,312,0 chrIV 410477 . C G 2743 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=20.17;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2776,327,0 chrIV 410485 . A G 2612 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=19.21;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2645,312,0 chrIV 410499 . G C 2529 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=18.33;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2562,297,0 chrIV 410549 . C T 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=155;Dels=0.00;FS=3.155;HaplotypeScore=132.5813;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;MQRankSum=-1.053;QD=17.32;ReadPosRankSum=1.596;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:2717,300,0 chrIV 410728 . C T 2524 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=21.57;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2557,288,0 chrIV 410933 . T C 1802 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=18.77;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1835,207,0 chrIV 411047 . A C 3545.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.95;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3545,408,0 chrIV 411287 . C T 5160.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=15.6020;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.14;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5160,570,0 chrIV 411324 . C T 4255.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.2200;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.46;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4255,474,0 chrIV 411544 . T C 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=153;Dels=0.00;FS=3.837;HaplotypeScore=16.0784;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-0.762;QD=16.42;ReadPosRankSum=1.617;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:2546,294,0 chrIV 411666 . T C 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=3.647;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=0.787;QD=20.98;ReadPosRankSum=1.706;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2803,321,0 chrIV 411679 . A G 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=129;Dels=0.00;FS=2.958;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-0.586;QD=21.67;ReadPosRankSum=2.411;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2829,327,0 chrIV 411688 . A G 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-0.147;QD=21.35;ReadPosRankSum=1.703;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2552,288,0 chrIV 412382 . C T 9048.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=401;Dels=0.00;FS=0.000;HaplotypeScore=38.0839;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.391;QD=22.56;ReadPosRankSum=1.093;SB=-3.625e+03 GT:AD:DP:GQ:PL 1/1:1,399:401:99:9048,991,0 chrIV 413178 . T C 245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;MQRankSum=-0.144;QD=10.21;ReadPosRankSum=1.589;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:33:278,33,0 chrIV 413236 . T G 1095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;MQRankSum=-0.157;QD=14.22;ReadPosRankSum=1.642;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1128,129,0 chrIV 413241 . G A 1115 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=13.43;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1148,132,0 chrIV 413252 . C A 1229 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=13.36;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1262,144,0 chrIV 413313 . T C 1262 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=17.77;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1295,150,0 chrIV 413443 . G A 3074 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=23.11;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3107,351,0 chrIV 413559 . G A 2167 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.64;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2200,240,0 chrIV 413595 . T C 2275 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.26;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2308,264,0 chrIV 413759 . A G 2077 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.19;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2110,240,0 chrIV 414183 . C T 3936.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3936,441,0 chrIV 414243 . T C 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=4.242;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.048;QD=21.86;ReadPosRankSum=1.689;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3563,405,0 chrIV 414354 . C T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.73;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4179,450,0 chrIV 414564 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=149;Dels=0.00;FS=2.944;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.988;QD=22.00;ReadPosRankSum=2.416;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3278,375,0 chrIV 414726 . T C 2620 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2653,312,0 chrIV 415078 . T C 1752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.6921;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.569;QD=20.61;ReadPosRankSum=0.917;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1785,182,0 chrIV 415353 . G A 4107.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.45;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4107,450,0 chrIV 415413 . A G 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=6.6195;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=0.603;QD=19.18;ReadPosRankSum=1.716;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:1,220:223:99:4277,489,0 chrIV 415430 . T C 5002.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.4162;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.09;SB=-2.965e+03 GT:AD:DP:GQ:PL 1/1:0,246:249:99:5002,567,0 chrIV 415728 . A G 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=186;Dels=0.00;FS=3.029;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-1.969;QD=21.32;ReadPosRankSum=2.369;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:2,182:186:99:3965,456,0 chrIV 415755 . G A 4403.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.57;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:0,210:214:99:4403,480,0 chrIV 415969 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.61;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3978,453,0 chrIV 416043 . A G 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.2515;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.866;QD=19.42;ReadPosRankSum=1.714;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:3768,444,0 chrIV 416109 . G A 3929.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.8892;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.58;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3929,441,0 chrIV 416301 . T C 4618.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.48;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4618,522,0 chrIV 416304 . A G 4439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=208;Dels=0.00;FS=8.470;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.912;QD=21.34;ReadPosRankSum=2.402;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:2,204:208:99:4439,492,0 chrIV 416544 . G A 4135.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=25.5517;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=20.78;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4135,465,0 chrIV 416574 . T C 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=3.657;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.203;QD=20.76;ReadPosRankSum=1.695;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3923,459,0 chrIV 416628 . G A 4041.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=22.08;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4041,453,0 chrIV 416675 . A G 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=2.567;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.299;QD=22.02;ReadPosRankSum=2.410;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2764,315,0 chrIV 416754 . C T 2361 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.92;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2394,258,0 chrIV 416856 . G A 2454 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=22.51;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2487,273,0 chrIV 416872 . A C 1854 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.60;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1887,222,0 chrIV 416924 . T A 2645 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.00;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2678,303,0 chrIV 417015 . T C 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.767;QD=23.16;ReadPosRankSum=1.647;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2882,327,0 chrIV 417206 . G A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.3954;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.21;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4242,474,0 chrIV 417374 . G A 3703.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.80;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3703,417,0 chrIV 417748 . G A 5073.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.38;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5073,573,0 chrIV 418485 . T C 4349.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.9718;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=22.77;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4349,498,0 chrIV 419490 . G T 4195.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.68;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4195,468,0 chrIV 419688 . T G 3538.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.33;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3538,405,0 chrIV 419703 . C T 3455.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=19.97;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3455,387,0 chrIV 420417 . T C 4694.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.3914;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.63;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4694,531,0 chrIV 420453 . C T 4175.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.45;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4175,471,0 chrIV 420475 . G A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.93;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3507,393,0 chrIV 420492 . G A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.58;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3583,390,0 chrIV 420571 . C G 3437.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.0727;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.89;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3437,387,0 chrIV 420755 . C T 2344 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.31;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,106:110:99:2377,261,0 chrIV 420945 . A G 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=108;Dels=0.00;FS=3.045;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.926;QD=22.20;ReadPosRankSum=2.404;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2431,276,0 chrIV 421109 . C T 4008.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4008,441,0 chrIV 421556 . C T 2016 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.65;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2049,228,0 chrIV 421602 . T C 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=91;Dels=0.00;FS=4.309;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=0.331;QD=21.14;ReadPosRankSum=1.693;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,88:91:99:1957,228,0 chrIV 421614 . A G 1891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.753;QD=20.12;ReadPosRankSum=1.694;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,91:94:99:1924,222,0 chrIV 421790 . T G 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-1.237;QD=22.76;ReadPosRankSum=1.677;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2923,342,0 chrIV 421989 . C G 3737.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=21.35;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3737,429,0 chrIV 422005 . A T 3879.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=173;Dels=0.00;FS=3.086;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=0.871;QD=22.42;ReadPosRankSum=1.692;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3879,423,0 chrIV 422276 . C A 3329.01 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=21.76;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3329,369,0 chrIV 422278 . G A 3194 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=21.01;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3227,366,0 chrIV 422280 . C G 3202 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=153;Dels=0.00;FS=4.466;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;MQRankSum=0.264;QD=20.93;ReadPosRankSum=-1.296;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3235,369,0 chrIV 422318 . G T 3055 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.10;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3088,339,0 chrIV 422574 . C T 2951 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=23.61;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2984,321,0 chrIV 422595 . C T 2238 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.8015;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=20.92;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2271,246,0 chrIV 422672 . A G 2801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=137;Dels=0.03;FS=11.308;HaplotypeScore=25.8942;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.641;QD=20.45;ReadPosRankSum=2.947;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:3,129:133:99:2834,333,0 chrIV 422737 . C T 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;MQRankSum=-1.261;QD=18.51;ReadPosRankSum=-1.483;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2384,258,0 chrIV 422745 . G C 2079 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=107.2025;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;QD=16.63;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:2112,243,0 chrIV 422794 . C T 2119 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;QD=18.43;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2152,234,0 chrIV 423046 . A G 4534.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.90;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4534,525,0 chrIV 423061 . G A 4424.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.01;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4424,498,0 chrIV 423118 . G C 4359.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=16.0200;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.66;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4359,489,0 chrIV 423202 . A G 6297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=293;Dels=0.00;FS=4.024;HaplotypeScore=14.5562;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-1.235;QD=21.49;ReadPosRankSum=1.685;SB=-2.909e+03 GT:AD:DP:GQ:PL 1/1:1,292:293:99:6297,734,0 chrIV 423276 . C T 4681.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.47;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4681,516,0 chrIV 423322 . A G 4144.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=22.52;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4144,471,0 chrIV 423383 . A G 5385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.418;QD=20.55;ReadPosRankSum=2.431;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:2,259:262:99:5385,615,0 chrIV 423385 . T G 5152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=259;Dels=0.00;FS=5.161;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-1.001;QD=19.89;ReadPosRankSum=1.719;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:1,255:259:99:5152,597,0 chrIV 423430 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.0358;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=17.52;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3433,393,0 chrIV 423515 . G A 3375.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=14.9206;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.50;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3375,366,0 chrIV 423595 . C G 3518.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.85;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3518,414,0 chrIV 423680 . C T 3612.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=23.45;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3612,396,0 chrIV 423847 . G T 3417.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.48;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3417,378,0 chrIV 423869 . C T 3946.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=23.92;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3946,426,0 chrIV 423908 . T C 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=3.248;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.831;QD=20.43;ReadPosRankSum=1.709;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3118,354,0 chrIV 423912 . A G 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=148;Dels=0.00;FS=3.006;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=0.192;QD=19.81;ReadPosRankSum=2.416;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:2965,339,0 chrIV 424075 . G A 2989 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.1668;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.47;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3022,342,0 chrIV 424226 . G A 2933 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2966,324,0 chrIV 424517 . A G 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.844;QD=19.89;ReadPosRankSum=1.710;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3216,372,0 chrIV 424905 . C A 3757.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0460;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.05;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3757,426,0 chrIV 425036 . T C 3779.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3779,435,0 chrIV 425098 . G C 3907.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3907,444,0 chrIV 425910 . G A 3047 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.76;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3080,354,0 chrIV 426326 . C T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.08;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3290,369,0 chrIV 426362 . T C 3299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.677;DP=167;Dels=0.00;FS=10.021;HaplotypeScore=14.3741;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.665;QD=19.75;ReadPosRankSum=2.933;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:3,162:167:99:3299,375,0 chrIV 426545 . T C 3050 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=22.93;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3083,357,0 chrIV 426781 . A T 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=141;Dels=0.00;FS=6.109;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-1.536;QD=23.68;ReadPosRankSum=2.950;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:3339,360,0 chrIV 426788 . T C 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.276;QD=22.19;ReadPosRankSum=1.707;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3118,348,0 chrIV 426846 . T C 2889 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.24;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2922,327,0 chrIV 426944 . A G 1270 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.48;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:1,59:62:99:1303,144,0 chrIV 426951 . A G 1295 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.89;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1328,147,0 chrIV 427072 . T C 1555 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.2006;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=18.96;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1588,180,0 chrIV 427169 . C T 1318 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.87;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1351,147,0 chrIV 427322 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=19.94;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2207,246,0 chrIV 427330 . C T 2267 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.38;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2300,252,0 chrIV 427996 . A T 4425.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4425,495,0 chrIV 428558 . T C 1902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=0.885;QD=20.90;ReadPosRankSum=1.694;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1935,225,0 chrIV 428676 . G A 2541 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=21.53;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2574,288,0 chrIV 428706 . C T 2142 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.86;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2175,237,0 chrIV 428725 . T A 2347 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.53;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2380,264,0 chrIV 428786 . T C 1478 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.7273;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=18.25;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1511,168,0 chrIV 428851 . C T 2085 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.2805;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=17.82;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2118,240,0 chrIV 428899 . C T 3011 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=23.16;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3044,330,0 chrIV 428900 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.20;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2964,333,0 chrIV 428983 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=24.43;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2403,258,0 chrIV 429057 . A G 3604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.069;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.535;QD=22.25;ReadPosRankSum=-0.813;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3604,383,0 chrIV 429363 . T G 5377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=21.5665;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.632;QD=21.09;ReadPosRankSum=1.705;SB=-2.952e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:5377,627,0 chrIV 429579 . G A 5621.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.31;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5621,633,0 chrIV 430281 . C T 5419.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.56;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5419,591,0 chrIV 430309 . G A 4438.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.34;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4438,498,0 chrIV 430599 . A T 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-2.199;QD=22.50;ReadPosRankSum=1.028;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3308,375,0 chrIV 430665 . C T 4118.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.0666;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.40;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4118,453,0 chrIV 430932 . G T 2483 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.52;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2516,282,0 chrIV 430949 . G C 2088 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.89;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2121,249,0 chrIV 431674 . G C 4158.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.02;FS=0.000;HaplotypeScore=36.6714;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.00;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4158,474,0 chrIV 431897 . A T 4709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=196;Dels=0.00;FS=3.406;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-1.430;QD=24.03;ReadPosRankSum=1.661;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4709,510,0 chrIV 431927 . G A 4188.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=24.07;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4188,456,0 chrIV 432487 . G C 3173 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.50;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3206,369,0 chrIV 432800 . T C 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=154;Dels=0.00;FS=2.853;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.774;QD=22.32;ReadPosRankSum=2.418;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3437,390,0 chrIV 432803 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.789;QD=21.73;ReadPosRankSum=1.688;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3433,387,0 chrIV 432926 . C T 2699 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.94;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2732,309,0 chrIV 432992 . G A 2314 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.12;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2347,264,0 chrIV 433146 . G A 2111 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=22.70;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2144,237,0 chrIV 433160 . A C 1794 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=20.16;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1827,210,0 chrIV 433175 . C T 1494 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=20.19;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1527,159,0 chrIV 433233 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.1628;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.66;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1679,183,0 chrIV 433297 . C T 2653 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.57;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2686,297,0 chrIV 433317 . C A 2432 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.27;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2465,282,0 chrIV 433376 . G A 2116 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=18.24;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2149,237,0 chrIV 433396 . A G 2182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.045;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;MQRankSum=0.180;QD=17.32;ReadPosRankSum=1.649;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2215,258,0 chrIV 433401 . C T 2264 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=16.77;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2297,249,0 chrIV 433434 . C T 3414.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.2500;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.85;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3414,387,0 chrIV 433470 . C G 4358.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.0215;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.70;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,188:192:99:4358,483,0 chrIV 433591 . T A 8600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=352;Dels=0.00;FS=0.000;HaplotypeScore=23.4648;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.998;QD=24.43;ReadPosRankSum=1.722;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:1,351:352:99:8600,925,0 chrIV 433703 . T C 6215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=279;Dels=0.00;FS=4.003;HaplotypeScore=13.5970;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.521;QD=22.28;ReadPosRankSum=1.707;SB=-2.743e+03 GT:AD:DP:GQ:PL 1/1:1,278:279:99:6215,705,0 chrIV 433742 . T C 8356.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=380;Dels=0.00;FS=4.703;HaplotypeScore=11.4403;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.008;QD=21.99;ReadPosRankSum=1.677;SB=-3.281e+03 GT:AD:DP:GQ:PL 1/1:1,377:380:99:8356,957,0 chrIV 433889 . A G 3856.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.2036;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.54;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3856,447,0 chrIV 434021 . C T 2815 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=13.8866;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.33;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2848,309,0 chrIV 434124 . A G 1724 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;QD=19.37;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1757,204,0 chrIV 434129 . T C 1640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.745;DP=99;Dels=0.00;FS=11.355;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.95;MQ0=0;MQRankSum=-0.092;QD=16.57;ReadPosRankSum=2.929;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:3,96:99:99:1673,195,0 chrIV 434153 . T C 1838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.055;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;MQRankSum=-0.554;QD=18.95;ReadPosRankSum=1.696;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1871,222,0 chrIV 434166 . A C 1993 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;QD=19.93;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2026,237,0 chrIV 434178 . G A 2339 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=17.2360;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=22.93;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2372,258,0 chrIV 434351 . C T 1692 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=65.3699;MLEAC=2;MLEAF=1.00;MQ=33.49;MQ0=0;QD=23.50;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1725,198,0 chrIV 434368 . G C 1026 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=19.00;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1059,126,0 chrIV 434371 . T A 1024 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=20.48;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1057,120,0 chrIV 434379 . G A 958 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;QD=20.38;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:991,111,0 chrIV 434921 . C T 1219 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.82;MQ0=0;QD=12.44;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1252,135,0 chrIV 434947 . A G 2059 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;QD=16.88;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2092,240,0 chrIV 435004 . T C 2615 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.2665;MLEAC=2;MLEAF=1.00;MQ=39.33;MQ0=0;QD=21.09;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2648,303,0 chrIV 435072 . T C 2247 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=34.79;MQ0=0;QD=22.70;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2280,267,0 chrIV 435113 . C T 2499 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=38.37;MQ0=0;QD=22.93;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2532,288,0 chrIV 435139 . C T 2203 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.62;MQ0=0;QD=21.39;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2236,252,0 chrIV 435202 . A C 1442 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;QD=21.21;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1475,168,0 chrIV 435213 . T A 1462 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=0;QD=22.84;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1495,162,0 chrIV 435214 . T C 1319 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=0;QD=20.61;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1352,162,0 chrIV 435275 . G A 46.97 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.30;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,36:36:9:79,9,0 chrIV 435323 . A T 127.13 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=34.87;MQ0=0;QD=1.63;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,78:78:18:160,18,0 chrIV 435397 . G A 1576 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=23.88;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1609,186,0 chrIV 435518 . A T 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.234;DP=133;Dels=0.00;FS=8.226;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;MQRankSum=2.128;QD=23.06;ReadPosRankSum=3.340;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:4,129:133:99:3100,336,0 chrIV 435680 . T C 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=1.683;QD=22.56;ReadPosRankSum=1.708;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3237,369,0 chrIV 435820 . A G 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=3.680;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.891;QD=22.78;ReadPosRankSum=1.707;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3222,366,0 chrIV 435908 . G A 2884 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=20.60;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2917,315,0 chrIV 435990 . A G 2154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=-1.732;QD=19.06;ReadPosRankSum=1.609;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2187,255,0 chrIV 435991 . T G 2030 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=18.62;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2063,240,0 chrIV 436011 . G A 2216 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=21.94;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2249,240,0 chrIV 436026 . T C 2151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=6.778;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=1.039;QD=21.51;ReadPosRankSum=1.697;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2184,246,0 chrIV 436162 . A C 1106 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=18.43;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1139,132,0 chrIV 436177 . C T 854 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=14.47;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:887,99,0 chrIV 436257 . G A 1022 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;QD=14.39;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1055,117,0 chrIV 436270 . G C 1136 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=14.56;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1169,132,0 chrIV 436482 . T A 3275.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=22.28;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3275,357,0 chrIV 436497 . G C 2929 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.54;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2962,339,0 chrIV 436543 . C T 2820 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=21.53;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2853,309,0 chrIV 436565 . T C 2721 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.43;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2754,321,0 chrIV 436884 . C T 2566 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=23.98;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2599,291,0 chrIV 436994 . T C 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=117;Dels=0.00;FS=7.435;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=1.104;QD=21.61;ReadPosRankSum=2.324;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2561,288,0 chrIV 437035 . C A 2703 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=24.13;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2736,297,0 chrIV 437100 . T C 1783 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=40.44;MQ0=0;QD=21.74;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1816,210,0 chrIV 437126 . T C 1272 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.70;MQ0=0;QD=19.57;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1305,153,0 chrIV 437130 . A G 1300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.76;MQ0=0;MQRankSum=-2.334;QD=20.31;ReadPosRankSum=2.373;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1333,150,0 chrIV 437210 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrIV 437330 . A T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.91;MQ0=0;QD=10.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:52,6,0 chrIV 437637 . C T 2409 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;QD=21.32;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2442,270,0 chrIV 437695 . T G 1922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=89;Dels=0.00;FS=3.583;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;MQRankSum=-0.642;QD=21.60;ReadPosRankSum=1.654;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1955,225,0 chrIV 437855 . C T 1315 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=66.8508;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=16.04;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1348,153,0 chrIV 437881 . C T 1704 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.73;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1737,198,0 chrIV 437896 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=19.66;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1724,186,0 chrIV 437955 . A G 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=133;Dels=0.00;FS=3.319;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-1.653;QD=22.11;ReadPosRankSum=1.626;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2973,336,0 chrIV 438009 . A T 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=138;Dels=0.00;FS=3.854;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.866;QD=22.72;ReadPosRankSum=1.681;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3168,357,0 chrIV 438718 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.00;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3246,378,0 chrIV 438856 . A G 3190 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.55;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3223,375,0 chrIV 439479 . A G 1617 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.00;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1650,195,0 chrIV 439631 . G T 2322 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.76;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2355,258,0 chrIV 439746 . A T 2538 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.26;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2571,288,0 chrIV 439768 . T C 2503 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.77;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2536,288,0 chrIV 439851 . C G 2877 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.78;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2910,318,0 chrIV 439923 . T C 3730.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.4693;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.91;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3730,438,0 chrIV 440415 . G A 4596.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4596,504,0 chrIV 440496 . A G 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=153;Dels=0.00;FS=5.709;HaplotypeScore=6.6976;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.599;QD=22.52;ReadPosRankSum=2.954;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3445,399,0 chrIV 440889 . T C 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=186;Dels=0.00;FS=3.350;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=1.155;QD=20.91;ReadPosRankSum=1.695;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3889,438,0 chrIV 440913 . T C 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=175;Dels=0.00;FS=3.086;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=0.290;QD=18.05;ReadPosRankSum=1.412;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3191,360,0 chrIV 440916 . A C 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=-0.150;QD=18.99;ReadPosRankSum=1.692;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3323,381,0 chrIV 441071 . A G 4180.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=16.4387;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=20.10;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,204:208:99:4180,486,0 chrIV 441228 . T C 6908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.363;DP=301;Dels=0.00;FS=5.187;HaplotypeScore=10.5672;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.281;QD=22.95;ReadPosRankSum=3.398;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:4,297:301:99:6908,795,0 chrIV 441285 . T C 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.898;DP=255;Dels=0.00;FS=45.843;HaplotypeScore=9.6051;MLEAC=1;MLEAF=0.500;MQ=48.87;MQ0=0;MQRankSum=3.595;QD=0.06;ReadPosRankSum=-5.949;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:240,14:255:44:44,0,853 chrIV 441323 . A G 221.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.250;DP=248;Dels=0.00;FS=3.835;HaplotypeScore=965.0811;MLEAC=1;MLEAF=0.500;MQ=49.78;MQ0=0;MQRankSum=1.734;QD=0.89;ReadPosRankSum=-8.183;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:219,27:248:99:251,0,842 chrIV 441348 . T C 4925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.451;DP=284;Dels=0.00;FS=20.547;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=1.182;QD=17.34;ReadPosRankSum=3.371;SB=-3.194e+03 GT:AD:DP:GQ:PL 1/1:6,277:284:99:4925,546,0 chrIV 441367 . C T 6300.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=5.3364;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=19.94;SB=-3.483e+03 GT:AD:DP:GQ:PL 1/1:0,316:316:99:6300,679,0 chrIV 441465 . A G 5628.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=23.1693;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=19.47;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:0,285:289:99:5628,645,0 chrIV 441629 . G A 4179.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.90;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4179,471,0 chrIV 441636 . A G 4326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=210;Dels=0.00;FS=6.085;HaplotypeScore=8.9341;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-0.725;QD=20.60;ReadPosRankSum=2.402;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:2,203:210:99:4326,492,0 chrIV 441738 . C T 4479.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.6722;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.06;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4479,486,0 chrIV 441837 . C T 3506.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=17.0362;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.07;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3506,381,0 chrIV 441971 . C T 2515 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.61;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2548,282,0 chrIV 442541 . T C 2398 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.28;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2431,279,0 chrIV 442638 . G T 2342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.3498;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.631;QD=21.89;ReadPosRankSum=1.473;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2375,270,0 chrIV 442746 . T C 2583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.275;QD=23.06;ReadPosRankSum=2.384;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2616,303,0 chrIV 442782 . A G 2669 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.85;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2702,309,0 chrIV 442788 . T C 2713 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.20;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2746,312,0 chrIV 443218 . T C 4211.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.64;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4211,480,0 chrIV 443281 . T A 3562.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.08;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3562,393,0 chrIV 443292 . A G 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.291;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-1.417;QD=19.14;ReadPosRankSum=1.711;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3210,341,0 chrIV 443491 . C T 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.7193;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.270;QD=22.56;ReadPosRankSum=1.369;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2424,267,0 chrIV 443547 . A G 2020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-1.653;QD=23.22;ReadPosRankSum=1.692;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2053,228,0 chrIV 443606 . T C 2164 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.86;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2197,243,0 chrIV 443630 . C T 2217 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.34;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2250,243,0 chrIV 443666 . G A 2405 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.02;FS=0.000;HaplotypeScore=15.8235;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.58;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2438,264,0 chrIV 443786 . C T 1943 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.45;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1976,213,0 chrIV 443799 . A G 2016 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=19.57;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2049,234,0 chrIV 443924 . C T 2570 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.24;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2603,291,0 chrIV 444518 . T C 1120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=52;Dels=0.00;FS=2.862;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.071;QD=21.54;ReadPosRankSum=2.355;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:1153,135,0 chrIV 444672 . G A 2614 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.34;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2647,288,0 chrIV 445249 . A G 4161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.7253;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.833;QD=22.13;ReadPosRankSum=1.713;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,184:188:99:4161,474,0 chrIV 445285 . C T 4405.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.68;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4405,489,0 chrIV 445443 . A G 4214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.268;DP=191;Dels=0.00;FS=9.169;HaplotypeScore=5.7757;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.467;QD=22.06;ReadPosRankSum=3.414;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:4,187:191:99:4214,474,0 chrIV 445472 . G A 3976.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.09;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3976,447,0 chrIV 445522 . G C 3276.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.98;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3276,390,0 chrIV 445581 . T C 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=189;Dels=0.00;FS=8.543;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.461;QD=20.99;ReadPosRankSum=2.424;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:3967,459,0 chrIV 445817 . C T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.6579;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.99;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3610,390,0 chrIV 445993 . A G 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=3.172;HaplotypeScore=7.6815;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.063;QD=22.12;ReadPosRankSum=1.669;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3628,429,0 chrIV 446016 . G A 3546.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.64;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3546,384,0 chrIV 446066 . A G 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.531;QD=19.93;ReadPosRankSum=1.710;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3122,360,0 chrIV 446421 . A G 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.285;QD=23.67;ReadPosRankSum=1.658;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2234,258,0 chrIV 446498 . G A 2380 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2413,270,0 chrIV 446662 . A G 2730 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6499;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.75;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2763,315,0 chrIV 446954 . G A 1297 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=20.92;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1330,144,0 chrIV 446977 . G A 1269 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=18.66;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,64:68:99:1302,141,0 chrIV 447357 . C T 3595.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.3654;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3595,387,0 chrIV 447589 . T C 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=3.932;HaplotypeScore=10.9519;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.688;QD=19.56;ReadPosRankSum=1.707;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:2732,312,0 chrIV 447952 . G C 4624.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.91;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4624,522,0 chrIV 448175 . A G 4507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.7031;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.249;QD=20.96;ReadPosRankSum=1.668;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4507,510,0 chrIV 448388 . T C 3682.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.45;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3682,432,0 chrIV 448634 . G C 2772 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.69;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2805,318,0 chrIV 449024 . A G 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=136;Dels=0.00;FS=9.105;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.967;QD=22.87;ReadPosRankSum=2.395;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3144,372,0 chrIV 449272 . A G 3720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.0916;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.720;QD=20.90;ReadPosRankSum=1.693;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3720,435,0 chrIV 449318 . A T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.82;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3295,369,0 chrIV 449471 . G A 2943 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=21.96;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2976,333,0 chrIV 449477 . C G 2787 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=21.27;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2820,324,0 chrIV 449562 . G A 1406 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.20;MQ0=0;QD=23.43;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1439,156,0 chrIV 449565 . A G 1231 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.93;MQ0=0;QD=21.60;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1264,144,0 chrIV 449566 . G C 1251 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=0;QD=22.34;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1284,147,0 chrIV 449578 . T C 1145 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.45;MQ0=0;QD=19.41;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1178,132,0 chrIV 449579 . T C 1126 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.94;MQ0=0;QD=19.41;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1159,129,0 chrIV 449623 . G T 1219 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=19.05;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1252,141,0 chrIV 449650 . G T 1414 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=19.92;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1447,168,0 chrIV 449652 . G A 1562 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;QD=21.40;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1595,174,0 chrIV 449709 . A G 1171 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=18.02;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1204,138,0 chrIV 449722 . A T 771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;MQRankSum=-1.435;QD=14.02;ReadPosRankSum=2.870;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:3,51:55:99:804,102,0 chrIV 449770 . T C 294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.164;DP=50;Dels=0.00;FS=15.939;HaplotypeScore=20.8137;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;MQRankSum=0.485;QD=5.88;ReadPosRankSum=-1.378;SB=-3.700e+01 GT:AD:DP:GQ:PL 1/1:25,25:50:36:327,36,0 chrIV 449794 . T C 983 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=17.25;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1016,114,0 chrIV 449823 . C T 1011 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=14.44;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1044,117,0 chrIV 449826 . C T 1012 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=14.88;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1045,114,0 chrIV 449988 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=25.58;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2386,255,0 chrIV 450016 . C T 2277 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=24.48;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2310,249,0 chrIV 450139 . C T 2553 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;QD=23.42;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2586,285,0 chrIV 450232 . G A 3288.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.5075;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.92;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3288,360,0 chrIV 450786 . G A 3543.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=21.0879;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.90;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,174:178:99:3543,402,0 chrIV 451263 . G A 4548.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.2620;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.85;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4548,492,0 chrIV 451441 . C T 3362.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.72;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3362,375,0 chrIV 451564 . A G 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=3.203;HaplotypeScore=6.6622;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.853;QD=20.97;ReadPosRankSum=1.707;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2969,345,0 chrIV 452236 . T C 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.527;QD=22.28;ReadPosRankSum=1.676;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4145,468,0 chrIV 452441 . G C 2563 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.02;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2596,288,0 chrIV 452728 . T C 1652 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=20.65;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1685,198,0 chrIV 452771 . C T 1107 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.42;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1140,123,0 chrIV 453755 . T C 2975 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2151;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.59;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3008,333,0 chrIV 453884 . G T 2738 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4090;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=23.01;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2771,306,0 chrIV 453908 . G A 2321 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=77.1023;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=20.91;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2354,255,0 chrIV 454193 . G C 4293.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.79;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4293,495,0 chrIV 454502 . C T 5017.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.78;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5017,564,0 chrIV 455316 . G A 3062 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.74;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3095,336,0 chrIV 455455 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.96;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2980,327,0 chrIV 455528 . T G 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=148;Dels=0.00;FS=2.967;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.811;QD=22.76;ReadPosRankSum=2.383;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3369,384,0 chrIV 455545 . A T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.86;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3498,381,0 chrIV 455618 . T C 3515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.3742;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.597;QD=22.82;ReadPosRankSum=1.710;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3515,402,0 chrIV 455651 . C A 4050.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=17.2766;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.68;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4050,441,0 chrIV 456106 . C T 3303.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.62;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3303,357,0 chrIV 456230 . A C 3660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=157;Dels=0.00;FS=3.326;HaplotypeScore=8.2185;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.430;QD=23.31;ReadPosRankSum=0.563;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3660,417,0 chrIV 456343 . T C 2707 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.7640;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.31;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2740,318,0 chrIV 456600 . G T 2575 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2608,294,0 chrIV 457403 . T C 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.147;DP=160;Dels=0.00;FS=8.960;HaplotypeScore=17.5415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.240;QD=21.82;ReadPosRankSum=3.336;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:5,153:160:99:3491,390,0 chrIV 457493 . G A 4515.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.4263;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.27;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4515,507,0 chrIV 457671 . C T 4223.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.29;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4223,459,0 chrIV 457907 . T C 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.054;QD=22.02;ReadPosRankSum=1.707;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3072,357,0 chrIV 458036 . G A 3746.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.64;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3746,405,0 chrIV 458153 . A T 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.638;QD=22.65;ReadPosRankSum=1.664;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3465,390,0 chrIV 458204 . C A 3067 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=20.05;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3100,336,0 chrIV 458209 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.52;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2980,318,0 chrIV 458397 . C G 2316 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=19.14;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2349,270,0 chrIV 458401 . G A 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=0.129;QD=20.34;ReadPosRankSum=0.673;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2494,251,0 chrIV 458419 . G A 2333 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=18.23;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2366,258,0 chrIV 458653 . T C 4699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=20.6329;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.325;QD=22.59;ReadPosRankSum=2.956;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:3,204:208:99:4699,543,0 chrIV 458712 . T C 5860.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=13.3327;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.92;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5860,672,0 chrIV 459304 . G A 4246.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.9949;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.59;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4246,459,0 chrIV 459391 . G A 3511.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0022;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.08;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3511,396,0 chrIV 459514 . G T 3047 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3080,339,0 chrIV 459567 . G A 3161 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.5716;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.50;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3194,351,0 chrIV 459811 . A G 2271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.676;DP=117;Dels=0.00;FS=6.135;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.149;QD=19.41;ReadPosRankSum=2.939;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:3,112:117:99:2304,258,0 chrIV 460219 . T C 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.255;DP=147;Dels=0.00;FS=8.233;HaplotypeScore=8.9631;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.097;QD=21.33;ReadPosRankSum=3.063;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:4,142:147:99:3169,360,0 chrIV 460279 . G A 3102 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.2791;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.48;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3135,345,0 chrIV 460305 . G T 2484 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.05;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2517,273,0 chrIV 460660 . C G 2911 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.22;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2944,339,0 chrIV 460852 . T C 3756.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.76;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3756,441,0 chrIV 460993 . A G 4622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=19.8115;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.519;QD=21.01;ReadPosRankSum=1.716;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:1,216:220:99:4622,534,0 chrIV 461027 . C T 5386.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.2610;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.52;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5386,574,0 chrIV 461088 . G A 4870.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.6166;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.76;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4870,522,0 chrIV 461425 . C T 1922 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.6521;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.61;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,92:98:99:1955,219,0 chrIV 461469 . G C 2055 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.76;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2088,237,0 chrIV 461615 . T C 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=1.003;QD=23.05;ReadPosRankSum=1.641;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2661,306,0 chrIV 461656 . A G 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=3.575;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-1.591;QD=20.90;ReadPosRankSum=1.704;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2624,303,0 chrIV 461659 . G A 2603 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.51;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2636,303,0 chrIV 462752 . A G 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.896;DP=144;Dels=0.00;FS=6.551;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.896;QD=21.42;ReadPosRankSum=-0.009;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3117,349,0 chrIV 463128 . G A 6040.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.69;SB=-3.269e+03 GT:AD:DP:GQ:PL 1/1:0,253:255:99:6040,652,0 chrIV 464138 . C T 3584.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.97;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3584,399,0 chrIV 464266 . A G 4141.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.40;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4141,465,0 chrIV 464462 . G A 4358.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.30;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4358,480,0 chrIV 464487 . C G 3935.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.23;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3935,450,0 chrIV 464571 . T C 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=174;Dels=0.01;FS=12.015;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.433;QD=19.19;ReadPosRankSum=2.948;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:99:3339,375,0 chrIV 464573 . G A 3188 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=18.01;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3221,360,0 chrIV 465051 . T A 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.44;MQ0=0;MQRankSum=0.011;QD=16.40;ReadPosRankSum=1.710;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2640,294,0 chrIV 465055 . A C 2481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=4.942;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=0;MQRankSum=-0.888;QD=15.90;ReadPosRankSum=1.688;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2514,285,0 chrIV 465219 . C T 2932 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1570;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=20.50;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2965,321,0 chrIV 465343 . T A 3953.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=23.39;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3953,432,0 chrIV 465360 . C T 3823.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.62;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3823,420,0 chrIV 465563 . T A 4102.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.5461;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.05;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4102,459,0 chrIV 465945 . T C 4414.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.99;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4414,504,0 chrIV 466117 . G T 5842.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=6.0666;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.17;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,275:276:99:5842,637,0 chrIV 466128 . G C 5380.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=19.71;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:5380,618,0 chrIV 466281 . A G 5177.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=6.4099;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=18.56;SB=-3.394e+03 GT:AD:DP:GQ:PL 1/1:0,276:279:99:5177,603,0 chrIV 466282 . G A 5378.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=6.4099;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=19.28;SB=-3.473e+03 GT:AD:DP:GQ:PL 1/1:0,279:279:99:5378,597,0 chrIV 466362 . T C 5433.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=27.3376;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=19.54;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,276:278:99:5433,633,0 chrIV 466410 . T C 6366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=282;Dels=0.00;FS=3.774;HaplotypeScore=11.9635;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.726;QD=22.57;ReadPosRankSum=1.670;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:1,278:282:99:6366,720,0 chrIV 466599 . C G 4610.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.54;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4610,534,0 chrIV 466737 . C T 4726.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=23.8437;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.08;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4726,516,0 chrIV 468403 . A G 4005.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.9933;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.01;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4005,462,0 chrIV 469598 . T C 3820.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.60;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3820,429,0 chrIV 469779 . A T 4702.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.61;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4702,519,0 chrIV 470229 . A T 3876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=168;Dels=0.00;FS=2.794;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.724;QD=23.07;ReadPosRankSum=2.362;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3876,429,0 chrIV 470589 . C T 1610 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=17.69;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1643,180,0 chrIV 470598 . C T 1850 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.11;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1883,201,0 chrIV 470659 . T C 1752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=93;Dels=0.00;FS=2.926;HaplotypeScore=12.4392;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.629;QD=18.84;ReadPosRankSum=2.396;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:2,90:93:99:1785,204,0 chrIV 470731 . A T 1997 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.19;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2030,222,0 chrIV 471044 . T C 3513.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=24.06;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3513,402,0 chrIV 471085 . A G 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.257;QD=22.75;ReadPosRankSum=1.711;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3686,420,0 chrIV 471230 . C G 2337 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.0355;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.50;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2370,270,0 chrIV 471249 . T C 2138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=113;Dels=0.00;FS=9.387;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=0.144;QD=18.92;ReadPosRankSum=2.405;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:2,109:113:99:2171,246,0 chrIV 471261 . A G 2105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=110;Dels=0.00;FS=2.810;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.145;QD=19.14;ReadPosRankSum=2.405;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2138,243,0 chrIV 471530 . A G 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=6.392;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-1.424;QD=22.92;ReadPosRankSum=2.245;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2508,288,0 chrIV 472536 . C T 1033.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.020;DP=348;Dels=0.00;FS=3.598;HaplotypeScore=22.9470;MLEAC=1;MLEAF=0.500;MQ=20.68;MQ0=102;MQRankSum=-4.069;QD=2.97;ReadPosRankSum=1.557;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:174,174:348:99:1063,0,2046 chrIV 472671 . T C 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.677;DP=285;Dels=0.00;FS=62.933;HaplotypeScore=29.2725;MLEAC=1;MLEAF=0.500;MQ=40.20;MQ0=33;MQRankSum=-9.055;QD=0.24;ReadPosRankSum=-1.691;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:210,75:285:98:98,0,3824 chrIV 472918 . G A 3977.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=3;QD=24.40;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3977,429,0 chrIV 473411 . T C 4285.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.04;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:4285,486,0 chrIV 473492 . C T 4340.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.9179;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.38;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4340,486,0 chrIV 473555 . A G 4265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=186;Dels=0.00;FS=5.758;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.470;QD=22.93;ReadPosRankSum=2.876;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:4265,489,0 chrIV 474265 . G A 4344.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.8065;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=19.84;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4344,495,0 chrIV 474320 . A G 4925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.990;QD=19.47;ReadPosRankSum=1.691;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:1,251:253:99:4925,564,0 chrIV 474321 . A G 4968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.430;DP=251;Dels=0.00;FS=2.977;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-1.022;QD=19.79;ReadPosRankSum=2.401;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:2,249:251:99:4968,552,0 chrIV 474625 . T G 4707.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=5.7834;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.64;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:4707,546,0 chrIV 474628 . A G 4694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.619;QD=20.77;ReadPosRankSum=2.384;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:2,222:226:99:4694,540,0 chrIV 475191 . A C 2179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=99;Dels=0.00;FS=3.100;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.071;QD=22.01;ReadPosRankSum=1.697;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2212,252,0 chrIV 475206 . A G 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=110;Dels=0.00;FS=6.643;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-0.350;QD=20.40;ReadPosRankSum=2.314;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2277,258,0 chrIV 475233 . T C 1954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.577;QD=19.54;ReadPosRankSum=1.697;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:1987,222,0 chrIV 475350 . G A 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=0.969;QD=21.66;ReadPosRankSum=-1.057;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2611,285,0 chrIV 475366 . A G 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=126;Dels=0.00;FS=6.126;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.960;QD=20.63;ReadPosRankSum=2.944;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:3,122:126:99:2633,300,0 chrIV 475458 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.47;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3708,420,0 chrIV 475608 . T C 3411.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=22.29;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3411,375,0 chrIV 475620 . C T 3375.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.35;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3375,369,0 chrIV 475974 . A G 2388 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.2638;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2421,273,0 chrIV 476334 . G A 130.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;DP=90;Dels=0.00;FS=3.959;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=36.07;MQ0=0;MQRankSum=-0.748;QD=1.44;ReadPosRankSum=-7.366;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:60,29:90:99:160,0,211 chrIV 476363 . A G 720 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=9.47;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:90:753,90,0 chrIV 476531 . A G 2053 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=19.55;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2086,237,0 chrIV 476602 . A G 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=91;Dels=0.00;FS=3.059;HaplotypeScore=7.3444;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=1.148;QD=20.16;ReadPosRankSum=1.693;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,88:91:99:1868,210,0 chrIV 476684 . G A 2590 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.2303;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.55;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2623,279,0 chrIV 476875 . G C 5155.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.71;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:5155,588,0 chrIV 476888 . C G 5360.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.71;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,231:236:99:5360,603,0 chrIV 477034 . A G 5113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.069;QD=22.13;ReadPosRankSum=1.687;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:1,229:231:99:5113,588,0 chrIV 477367 . G A 4363.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4363,486,0 chrIV 477881 . G A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.30;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3912,420,0 chrIV 477925 . C T 4212.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.27;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4212,471,0 chrIV 477962 . A G 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=175;Dels=0.00;FS=3.967;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.886;QD=22.90;ReadPosRankSum=1.712;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,171:175:99:4008,453,0 chrIV 478092 . G C 2908 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.1218;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.77;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,135:140:99:2941,339,0 chrIV 478241 . C T 3215 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.47;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3248,354,0 chrIV 478288 . T C 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=3.897;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.426;QD=20.93;ReadPosRankSum=1.679;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2754,312,0 chrIV 478585 . T C 4213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.1466;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.591;QD=24.21;ReadPosRankSum=1.712;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4213,483,0 chrIV 478660 . C A 4256.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.76;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4256,483,0 chrIV 478690 . C T 4125.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.54;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4125,447,0 chrIV 478977 . A G 4384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=195;Dels=0.00;FS=2.805;HaplotypeScore=6.2291;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.145;QD=22.48;ReadPosRankSum=2.424;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4384,498,0 chrIV 479106 . C T 3821.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.83;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3821,411,0 chrIV 479694 . G A 2467 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.63;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2500,282,0 chrIV 479946 . T C 3570.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.77;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3570,420,0 chrIV 480076 . G C 3734.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.18;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3734,426,0 chrIV 480096 . G A 3368.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.05;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3368,375,0 chrIV 480153 . C G 2549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.1109;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.408;QD=20.56;ReadPosRankSum=0.549;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2582,300,0 chrIV 480448 . G A 1931 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1964,225,0 chrIV 480624 . G A 4046.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.9753;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.48;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4046,438,0 chrIV 480726 . G A 4398.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.85;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4398,477,0 chrIV 480846 . G A 4613.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.54;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4613,492,0 chrIV 480887 . A G 4818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=16.7731;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.441;QD=21.70;ReadPosRankSum=1.701;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:1,219:222:99:4818,546,0 chrIV 480972 . C A 4483.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.3395;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.30;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4483,501,0 chrIV 481038 . A G 3856.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.66;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3856,444,0 chrIV 482148 . A G 1993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.148;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.173;QD=18.80;ReadPosRankSum=2.403;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2026,237,0 chrIV 482428 . G T 1837 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.55;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1870,207,0 chrIV 482955 . T C 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=133;Dels=0.00;FS=2.913;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-0.305;QD=22.81;ReadPosRankSum=2.394;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3067,351,0 chrIV 482988 . C T 3107 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.2106;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.54;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3140,339,0 chrIV 483119 . A G 2500 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=22.73;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2533,291,0 chrIV 483136 . T C 2649 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=22.26;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2682,306,0 chrIV 483162 . A G 2670 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.89;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2703,297,0 chrIV 483171 . C T 2777 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.87;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2810,300,0 chrIV 483341 . T C 2454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=110;Dels=0.00;FS=2.968;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.321;QD=22.31;ReadPosRankSum=2.247;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2487,279,0 chrIV 483420 . C T 2684 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.33;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2717,303,0 chrIV 483422 . G A 2731 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.23;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2764,300,0 chrIV 483501 . A G 2881 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.66;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2914,342,0 chrIV 483545 . T G 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.977;DP=168;Dels=0.00;FS=10.832;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.690;QD=22.17;ReadPosRankSum=4.063;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:6,161:168:99:3724,438,0 chrIV 483735 . A G 4501.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.28;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4501,513,0 chrIV 483836 . T G 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.9312;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.097;QD=22.08;ReadPosRankSum=1.711;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3555,420,0 chrIV 484026 . A G 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.212;QD=19.14;ReadPosRankSum=1.707;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2693,309,0 chrIV 484028 . A G 2662 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=18.36;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:2695,306,0 chrIV 484429 . C T 4807.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.46;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4807,513,0 chrIV 484657 . A G 2677 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.84;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2710,312,0 chrIV 484952 . G A 4904.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.81;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4904,546,0 chrIV 485593 . A G 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.48;MQ0=0;MQRankSum=0.861;QD=21.55;ReadPosRankSum=1.710;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3427,387,0 chrIV 485723 . C T 3284.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.61;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3284,366,0 chrIV 486064 . T C 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=175;Dels=0.00;FS=3.404;HaplotypeScore=9.7989;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=1.231;QD=20.05;ReadPosRankSum=1.672;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3508,399,0 chrIV 486079 . A G 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=1.362;QD=19.12;ReadPosRankSum=1.689;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3111,366,0 chrIV 486507 . T C 2627 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.46;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2660,300,0 chrIV 486539 . A T 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.896;QD=23.11;ReadPosRankSum=1.643;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2737,306,0 chrIV 487133 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3611,423,0 chrIV 487279 . A G 4095.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4095,459,0 chrIV 487410 . G C 3910.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3910,438,0 chrIV 487532 . C G 3651.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=15.8522;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.73;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3651,420,0 chrIV 488021 . C T 3114 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.09;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3147,339,0 chrIV 488205 . G A 4681.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.76;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4681,522,0 chrIV 488536 . C G 4831.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.38;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:4831,561,0 chrIV 488892 . T G 2637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=3.809;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-1.538;QD=21.10;ReadPosRankSum=1.704;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2670,300,0 chrIV 488906 . C T 2337 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=19.31;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2370,258,0 chrIV 489061 . C G 3684.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.2215;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.33;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3684,420,0 chrIV 489283 . T C 1391 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.5144;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.32;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1424,165,0 chrIV 489353 . T C 620 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=16.32;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,37:38:78:653,78,0 chrIV 489364 . A T 664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-0.678;QD=14.43;ReadPosRankSum=1.657;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:1,45:46:75:697,75,0 chrIV 489433 . C T 316 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,16:17:39:349,39,0 chrIV 489543 . T C 1371 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.48;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1404,159,0 chrIV 489556 . C T 1385 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.31;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1418,156,0 chrIV 490955 . T C 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=3.118;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-1.338;QD=23.00;ReadPosRankSum=1.704;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2862,324,0 chrIV 491175 . C T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.64;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3451,381,0 chrIV 491198 . A G 3739.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.52;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3739,417,0 chrIV 491272 . C T 3375.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.4056;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.92;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3375,369,0 chrIV 491337 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=171;Dels=0.00;FS=2.943;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.036;QD=20.74;ReadPosRankSum=2.421;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3547,399,0 chrIV 491804 . T A 2803 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=21.40;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2836,315,0 chrIV 492560 . T C 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.109;QD=22.83;ReadPosRankSum=1.682;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3206,366,0 chrIV 492686 . T G 5047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=214;Dels=0.00;FS=2.908;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.086;QD=23.58;ReadPosRankSum=2.381;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:5047,561,0 chrIV 493108 . G A 3638.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.9291;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.03;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3638,393,0 chrIV 493558 . G T 4675.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4675,507,0 chrIV 493876 . T C 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.118;DP=165;Dels=0.00;FS=8.026;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.822;QD=19.52;ReadPosRankSum=2.389;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3254,366,0 chrIV 495483 . T C 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=144;Dels=0.00;FS=2.829;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.845;QD=24.36;ReadPosRankSum=2.415;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3508,396,0 chrIV 495642 . G T 3573.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3573,408,0 chrIV 496104 . A T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.9415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3742,420,0 chrIV 496558 . G A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.70;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3507,381,0 chrIV 497067 . T A 3950.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.37;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3950,432,0 chrIV 497166 . C T 3690.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3690,411,0 chrIV 497300 . G A 2988 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.03;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3021,324,0 chrIV 497463 . T A 3449.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3449,369,0 chrIV 497525 . C T 3016 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3049,330,0 chrIV 497940 . G C 3378.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.35;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3378,384,0 chrIV 498016 . T C 3959.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.40;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3959,453,0 chrIV 498138 . A G 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=3.072;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.390;QD=22.38;ReadPosRankSum=1.708;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3211,357,0 chrIV 498305 . C T 3351.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.5752;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.56;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3351,369,0 chrIV 498490 . G T 4549.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.9863;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.63;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4549,498,0 chrIV 498744 . C T 7182.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=15.0885;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.32;SB=-3.799e+03 GT:AD:DP:GQ:PL 1/1:0,303:308:99:7182,789,0 chrIV 498945 . G A 6066.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=19.3851;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.36;SB=-3.098e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:6066,666,0 chrIV 499110 . G T 4848.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.55;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,211:215:99:4848,540,0 chrIV 499324 . A G 3817.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.99;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3817,432,0 chrIV 499592 . A G 3696.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=23.39;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3696,417,0 chrIV 499643 . C T 3602.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=22.51;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3602,390,0 chrIV 499648 . C A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.48;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3338,366,0 chrIV 499794 . G A 3311.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3311,378,0 chrIV 499917 . G A 3748.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.14;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3748,414,0 chrIV 500512 . C T 3280.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.8040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3280,354,0 chrIV 501226 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2582,285,0 chrIV 501608 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.4865;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.82;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2870,324,0 chrIV 501667 . A C 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=150;Dels=0.00;FS=3.190;HaplotypeScore=10.6102;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.538;QD=23.19;ReadPosRankSum=1.709;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3478,390,0 chrIV 501917 . C T 2517 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.97;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2550,279,0 chrIV 502097 . G T 2816 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2849,315,0 chrIV 502277 . T C 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=143;Dels=0.00;FS=6.763;HaplotypeScore=13.2233;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.166;QD=20.41;ReadPosRankSum=2.310;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:2952,339,0 chrIV 502877 . T C 4160.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.0410;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.22;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4160,471,0 chrIV 502920 . C T 4091.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.73;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4091,438,0 chrIV 503212 . G C 2635 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.0994;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.11;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2668,306,0 chrIV 503249 . C A 2860 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.34;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2893,315,0 chrIV 503375 . T C 1758 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=11.5336;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.31;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1791,201,0 chrIV 503628 . T C 3104 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.2426;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.49;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3137,363,0 chrIV 503809 . T C 2695 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.23;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2728,309,0 chrIV 504046 . C T 3221.92 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.18;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3255,357,0 chrIV 504071 . G A 3199 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.05;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3232,351,0 chrIV 504159 . C T 4237.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.78;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4237,474,0 chrIV 504183 . G A 4771.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=22.19;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4771,522,0 chrIV 504204 . C T 4764.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.89;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4764,528,0 chrIV 504540 . A G 4953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=226;Dels=0.00;FS=2.858;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.049;QD=21.92;ReadPosRankSum=2.395;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:2,223:226:99:4953,573,0 chrIV 504609 . A G 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.203;DP=184;Dels=0.00;FS=5.088;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.229;QD=18.77;ReadPosRankSum=3.289;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:4,180:184:99:3454,402,0 chrIV 504780 . A G 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4707;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.109;QD=21.59;ReadPosRankSum=1.684;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3120,354,0 chrIV 504869 . A G 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=107;Dels=0.00;FS=3.573;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.826;QD=22.68;ReadPosRankSum=1.603;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2460,282,0 chrIV 504990 . A G 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.374;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.847;QD=24.69;ReadPosRankSum=1.707;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3407,390,0 chrIV 505185 . C T 1655 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.18;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1688,189,0 chrIV 505206 . C T 1288 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=18.94;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1321,150,0 chrIV 505262 . T A 155.06 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=7.38;SB=-1.321e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:21:188,21,0 chrIV 505264 . T G 199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.89;MQ0=0;MQRankSum=-0.158;QD=9.05;ReadPosRankSum=1.576;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:1,21:22:27:232,27,0 chrIV 505274 . T A 267 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=9.89;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:33:300,33,0 chrIV 505327 . A G 837 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=18.20;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,45:46:99:870,99,0 chrIV 505399 . T A 1233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.693;QD=24.66;ReadPosRankSum=1.663;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1266,135,0 chrIV 505429 . C G 1395 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.25;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1428,162,0 chrIV 505466 . G T 1528 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=22.14;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1561,171,0 chrIV 505483 . A C 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.178;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=0.762;QD=20.49;ReadPosRankSum=1.132;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1570,186,0 chrIV 505504 . T C 1517 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=20.50;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1550,177,0 chrIV 505555 . A T 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=3.303;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=1.469;QD=21.57;ReadPosRankSum=1.657;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2039,219,0 chrIV 505577 . A C 2276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.5754;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.609;QD=20.88;ReadPosRankSum=-1.187;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2309,261,0 chrIV 505656 . A G 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=99;Dels=0.00;FS=3.191;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.636;QD=21.49;ReadPosRankSum=1.626;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2161,246,0 chrIV 505795 . C T 3541.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=25.85;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3541,381,0 chrIV 505821 . T A 2753 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=24.36;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2786,300,0 chrIV 506042 . T G 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.6230;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.461;QD=23.20;ReadPosRankSum=1.705;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3026,342,0 chrIV 506222 . A G 2348 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.1918;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.07;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2381,279,0 chrIV 506476 . C T 2044 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=11.8142;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.52;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2077,231,0 chrIV 506865 . T G 2889 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.11;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2922,333,0 chrIV 507040 . T C 2870 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2903,333,0 chrIV 507130 . G C 3078 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.83;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:3111,351,0 chrIV 507490 . G A 2431 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.76;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2464,282,0 chrIV 507495 . A G 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=1.051;QD=18.99;ReadPosRankSum=1.704;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2369,270,0 chrIV 507535 . G A 2914 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.75;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2947,333,0 chrIV 507634 . C G 3482.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.7141;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.06;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3482,399,0 chrIV 507721 . A T 2084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.164;QD=21.71;ReadPosRankSum=1.696;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2117,237,0 chrIV 507747 . C G 1899 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.87;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1932,222,0 chrIV 508845 . G A 7054.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.67;SB=-3.682e+03 GT:AD:DP:GQ:PL 1/1:0,297:298:99:7054,760,0 chrIV 509186 . A T 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.072;QD=20.35;ReadPosRankSum=1.650;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2617,288,0 chrIV 509349 . G A 1754 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1787,201,0 chrIV 509407 . G T 1802 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.45;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1835,198,0 chrIV 509488 . G A 2111 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3358;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.46;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2144,240,0 chrIV 509559 . A G 2252 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.52;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2285,261,0 chrIV 509676 . C T 2003 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.56;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2036,228,0 chrIV 509797 . C T 2575 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.1055;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.01;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2608,288,0 chrIV 509831 . T C 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-1.056;QD=22.09;ReadPosRankSum=1.704;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2772,318,0 chrIV 510079 . T C 2725 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.06;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2758,312,0 chrIV 510085 . C T 2705 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7389;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.03;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2738,300,0 chrIV 510199 . G A 2780 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.17;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2813,312,0 chrIV 510253 . C G 2581 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.98;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2614,306,0 chrIV 511121 . C G 2967 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.19;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3000,342,0 chrIV 511129 . C T 2863 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.6487;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.30;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2896,327,0 chrIV 511385 . A G 2707 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=17.58;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2740,312,0 chrIV 511400 . T G 2588 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=16.48;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2621,300,0 chrIV 511405 . C T 2632 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=16.66;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2665,294,0 chrIV 511483 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=19.67;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3561,384,0 chrIV 511492 . T C 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=177;Dels=0.00;FS=3.289;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.910;QD=19.43;ReadPosRankSum=1.713;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3439,390,0 chrIV 511543 . A G 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=191;Dels=0.00;FS=3.493;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=0.875;QD=19.29;ReadPosRankSum=1.714;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:3685,423,0 chrIV 511717 . C A 4286.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.54;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4286,465,0 chrIV 511770 . G C 4184.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.8542;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.02;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4184,471,0 chrIV 511815 . C T 3970.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.9686;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.58;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3970,444,0 chrIV 512370 . T C 4350.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.3396;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=22.19;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4350,495,0 chrIV 512392 . T C 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=-1.680;QD=18.58;ReadPosRankSum=1.715;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:3698,423,0 chrIV 512393 . G A 3780.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=19.19;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3780,417,0 chrIV 512455 . G T 2819 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.3637;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=15.66;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:2852,315,0 chrIV 512478 . A G 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=184;Dels=0.00;FS=6.092;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;MQRankSum=-0.798;QD=16.07;ReadPosRankSum=2.962;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:2989,345,0 chrIV 512484 . G C 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=181;Dels=0.00;FS=3.182;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;MQRankSum=0.297;QD=17.34;ReadPosRankSum=1.675;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3171,366,0 chrIV 512521 . C A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=17.87;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3378,366,0 chrIV 512535 . C G 3018 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=16.49;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3051,348,0 chrIV 512542 . G A 3064 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=17.02;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3097,345,0 chrIV 512603 . A G 3773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.013;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;MQRankSum=-1.051;QD=20.51;ReadPosRankSum=0.445;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3773,405,0 chrIV 512625 . A T 4264.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;QD=22.92;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4264,462,0 chrIV 512664 . A G 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=171;Dels=0.00;FS=5.286;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;MQRankSum=-0.462;QD=22.37;ReadPosRankSum=2.935;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:3,167:171:99:3825,435,0 chrIV 512707 . A C 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;MQRankSum=-0.011;QD=21.76;ReadPosRankSum=1.709;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3330,378,0 chrIV 512755 . T C 2346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=6.021;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;MQRankSum=-0.385;QD=21.72;ReadPosRankSum=1.700;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2379,267,0 chrIV 512796 . T C 1718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=93;Dels=0.00;FS=8.451;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=1.618;QD=18.47;ReadPosRankSum=1.694;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:1,90:93:99:1751,207,0 chrIV 512817 . T A 1694 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.37;MQ0=0;QD=19.03;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1727,189,0 chrIV 512823 . C T 1683 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;QD=19.80;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1716,186,0 chrIV 512840 . T C 1267 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=78;Dels=0.00;FS=13.984;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;MQRankSum=-2.355;QD=16.24;ReadPosRankSum=2.387;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1300,156,0 chrIV 512849 . T A 1247 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.86;MQ0=0;QD=16.41;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1280,141,0 chrIV 512850 . T A 1280 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=0;QD=15.61;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1313,144,0 chrIV 512878 . C T 1398 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.12;MQ0=0;QD=14.87;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1431,162,0 chrIV 512908 . C T 1355 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=18.31;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1388,150,0 chrIV 512921 . A G 1326 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=19.50;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1359,150,0 chrIV 512937 . G A 1181 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=20.02;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1214,132,0 chrIV 512960 . T A 684 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=19.9085;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=0;QD=18.00;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:78:717,78,0 chrIV 513059 . A T 2296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=5.788;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.94;MQ0=0;MQRankSum=-1.351;QD=25.23;ReadPosRankSum=1.694;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2329,249,0 chrIV 513065 . C G 1994 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.72;MQ0=0;QD=24.02;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2027,228,0 chrIV 513172 . T A 792 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=0;QD=19.80;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:825,93,0 chrIV 513176 . C T 884 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=0;QD=20.56;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:917,102,0 chrIV 513182 . T C 942 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;QD=18.84;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:975,111,0 chrIV 513193 . A C 871 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=17.08;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:904,102,0 chrIV 513196 . G A 919 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=17.67;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:952,102,0 chrIV 513211 . T G 912 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:945,105,0 chrIV 513222 . G T 1089 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1122,120,0 chrIV 513623 . A G 416 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.20;MQ0=0;QD=23.11;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:51:449,51,0 chrIV 513651 . A T 433 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.20;MQ0=0;QD=24.06;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:51:466,51,0 chrIV 519408 . C G 17.13 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.082;DP=290;Dels=0.00;FS=34.643;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.28;MQ0=160;MQRankSum=0.872;QD=0.06;ReadPosRankSum=-0.920;SB=-2.076e+00 GT:AD:DP:GQ:PL 0/1:280,7:290:18:47,0,18 chrIV 519504 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.78;MQ0=57;MQRankSum=0.347;QD=0.28;ReadPosRankSum=1.561;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:57,19:77:6:53,6,0 chrIV 519518 . T C 94.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DP=68;Dels=0.00;FS=13.802;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.89;MQ0=44;MQRankSum=1.589;QD=1.39;ReadPosRankSum=1.589;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:45,23:68:15:127,15,0 chrIV 519520 . G A 98.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.289;DP=68;Dels=0.00;FS=13.802;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.89;MQ0=44;MQRankSum=1.589;QD=1.45;ReadPosRankSum=1.589;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:44,24:68:15:131,15,0 chrIV 519529 . C A 107.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.743;DP=70;Dels=0.00;FS=35.153;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.39;MQ0=42;MQRankSum=2.748;QD=1.53;ReadPosRankSum=1.560;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:44,26:70:15:140,15,0 chrIV 519535 . C T 102.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.082;DP=60;Dels=0.00;FS=48.181;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.24;MQ0=34;MQRankSum=3.383;QD=1.70;ReadPosRankSum=2.537;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:39,21:60:15:135,15,0 chrIV 519536 . T G 100.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=60;Dels=0.00;FS=48.181;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.24;MQ0=34;MQRankSum=3.383;QD=1.67;ReadPosRankSum=2.537;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:39,21:60:15:133,15,0 chrIV 519547 . A T 99.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.998;DP=73;Dels=0.00;FS=99.097;HaplotypeScore=17.6125;MLEAC=2;MLEAF=1.00;MQ=17.47;MQ0=34;MQRankSum=5.020;QD=1.36;ReadPosRankSum=2.368;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:47,26:73:15:132,15,0 chrIV 519549 . T A 74.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.092;DP=74;Dels=0.00;FS=103.656;HaplotypeScore=17.6125;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=34;MQRankSum=5.147;QD=1.01;ReadPosRankSum=1.829;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:48,26:74:12:107,12,0 chrIV 519550 . A G 104.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.239;DP=74;Dels=0.00;FS=103.656;HaplotypeScore=17.6125;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=34;MQRankSum=5.147;QD=1.41;ReadPosRankSum=1.404;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:48,26:74:15:137,15,0 chrIV 519564 . G A 193.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.961;DP=85;Dels=0.00;FS=136.733;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.63;MQ0=35;MQRankSum=4.327;QD=2.27;ReadPosRankSum=0.703;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:55,30:85:39:223,0,39 chrIV 519565 . C T 196.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.844;DP=87;Dels=0.00;FS=144.322;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.42;MQ0=35;MQRankSum=4.751;QD=2.25;ReadPosRankSum=1.009;SB=-3.018e+00 GT:AD:DP:GQ:PL 0/1:56,30:87:35:226,0,35 chrIV 519568 . C G 194.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.565;DP=85;Dels=0.00;FS=144.322;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.63;MQ0=33;MQRankSum=4.436;QD=2.28;ReadPosRankSum=0.398;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:55,30:85:37:224,0,37 chrIV 519569 . A C 187.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.955;DP=84;Dels=0.00;FS=144.322;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.74;MQ0=32;MQRankSum=4.732;QD=2.23;ReadPosRankSum=0.046;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:54,30:84:45:217,0,45 chrIV 519576 . A T 254.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;DP=94;Dels=0.00;FS=167.220;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.31;MQ0=31;MQRankSum=4.794;QD=2.70;ReadPosRankSum=-3.251;SB=-3.018e+00 GT:AD:DP:GQ:PL 0/1:53,41:94:34:284,0,34 chrIV 519582 . G A 247.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.766;DP=93;Dels=0.00;FS=170.844;HaplotypeScore=1.9312;MLEAC=1;MLEAF=0.500;MQ=20.85;MQ0=28;MQRankSum=4.831;QD=2.66;ReadPosRankSum=-4.443;SB=-3.018e+00 GT:AD:DP:GQ:PL 0/1:50,43:93:32:277,0,32 chrIV 519588 . G A 216.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.983;DP=90;Dels=0.00;FS=169.050;HaplotypeScore=1.9312;MLEAC=1;MLEAF=0.500;MQ=20.98;MQ0=26;MQRankSum=5.195;QD=2.40;ReadPosRankSum=-4.177;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:47,43:90:37:246,0,37 chrIV 519598 . T C 164.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.960;DP=80;Dels=0.00;FS=157.499;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=20.78;MQ0=22;MQRankSum=4.719;QD=2.05;ReadPosRankSum=-3.758;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:44,36:80:43:194,0,43 chrIV 519605 . G A 155.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.968;DP=71;Dels=0.00;FS=124.858;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=19.80;MQ0=21;MQRankSum=4.757;QD=2.18;ReadPosRankSum=-2.850;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:42,29:71:58:185,0,58 chrIV 519606 . T C 141.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.182;DP=70;Dels=0.00;FS=135.916;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.92;MQ0=21;MQRankSum=4.233;QD=2.01;ReadPosRankSum=-2.960;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:41,28:70:41:171,0,41 chrIV 519607 . A G 134.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.909;DP=69;Dels=0.00;FS=135.916;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.06;MQ0=20;MQRankSum=4.536;QD=1.94;ReadPosRankSum=-2.818;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:41,28:69:47:164,0,47 chrIV 519611 . A G 150.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.051;DP=69;Dels=0.00;FS=135.916;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=20.06;MQ0=20;MQRankSum=4.738;QD=2.17;ReadPosRankSum=-2.879;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:41,28:69:50:180,0,50 chrIV 519612 . C G 150.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;DP=68;Dels=0.00;FS=135.916;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=20.21;MQ0=19;MQRankSum=4.778;QD=2.21;ReadPosRankSum=-2.818;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:40,28:68:46:180,0,46 chrIV 519615 . G C 144.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;DP=67;Dels=0.00;FS=132.236;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=20.34;MQ0=19;MQRankSum=4.360;QD=2.15;ReadPosRankSum=-3.043;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:38,28:67:44:174,0,44 chrIV 519619 . G A 159.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.720;DP=65;Dels=0.00;FS=117.612;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=20.65;MQ0=17;MQRankSum=4.427;QD=2.45;ReadPosRankSum=-3.500;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:36,29:65:44:189,0,44 chrIV 519624 . T C 149.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.070;DP=61;Dels=0.00;FS=128.434;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=21.30;MQ0=14;MQRankSum=4.325;QD=2.44;ReadPosRankSum=-3.501;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:33,28:61:44:179,0,44 chrIV 519629 . G T 193.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.593;DP=60;Dels=0.00;FS=120.426;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=21.47;MQ0=14;MQRankSum=4.155;QD=3.22;ReadPosRankSum=-4.624;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:31,28:60:43:223,0,43 chrIV 519632 . G T 151.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;DP=58;Dels=0.00;FS=114.235;HaplotypeScore=2.2019;MLEAC=1;MLEAF=0.500;MQ=21.50;MQ0=14;MQRankSum=3.857;QD=2.60;ReadPosRankSum=-4.862;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:28,27:58:47:181,0,47 chrIV 519681 . T C 1073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;MQRankSum=-0.433;QD=22.35;ReadPosRankSum=1.660;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1106,126,0 chrIV 519722 . A G 2571 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=0;QD=24.72;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2604,291,0 chrIV 519843 . C T 602 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=38.71;MQ0=0;QD=20.07;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,29:30:72:635,72,0 chrIV 519856 . A G 189.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=14;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;MQRankSum=-0.248;QD=13.50;ReadPosRankSum=1.488;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:1,13:14:27:222,27,0 chrIV 519858 . T C 157.03 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.02;MQ0=0;QD=13.09;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:24:190,24,0 chrIV 519859 . A G 158.03 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.02;MQ0=0;QD=13.17;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:24:191,24,0 chrIV 519882 . T C 174.03 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=9.16;SB=-9.804e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:24:207,24,0 chrIV 519884 . C A 173.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=1.187;QD=9.11;ReadPosRankSum=1.187;SB=-9.804e+01 GT:AD:DP:GQ:PL 1/1:1,18:19:24:206,24,0 chrIV 519890 . C T 192.03 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=15.4641;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=10.11;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:24:225,24,0 chrIV 519895 . T C 170.03 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=98.5838;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=8.95;SB=-9.604e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:24:203,24,0 chrIV 519898 . T G 174.03 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=147.8758;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=1;QD=8.70;SB=-9.904e+01 GT:AD:DP:GQ:PL 1/1:1,19:20:24:207,24,0 chrIV 519923 . A C 193.01 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.88;MQ0=1;QD=2.68;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:27:226,27,0 chrIV 519954 . A G 986 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;QD=10.16;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1019,114,0 chrIV 519960 . A G 1112 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=10.69;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1145,129,0 chrIV 520004 . G A 1769 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=20.33;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1802,195,0 chrIV 520031 . A G 1150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=4.164;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;MQRankSum=-1.732;QD=19.17;ReadPosRankSum=1.675;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1183,138,0 chrIV 520061 . C A 697 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.13;MQ0=0;QD=19.36;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:87:730,87,0 chrIV 520078 . A G 132.06 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=9.8312;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;QD=9.43;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:21:165,21,0 chrIV 520108 . A G 248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.20;MQ0=0;MQRankSum=-0.091;QD=13.05;ReadPosRankSum=1.552;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:1,18:19:33:281,33,0 chrIV 520115 . T C 335 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.99;MQ0=0;QD=11.96;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:42:368,42,0 chrIV 520121 . A G 510 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.93;MQ0=0;QD=15.45;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:63:543,63,0 chrIV 520210 . C A 1430 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;QD=20.43;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1463,171,0 chrIV 520212 . A G 1278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=67;Dels=0.00;FS=2.635;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=0;MQRankSum=-0.627;QD=19.07;ReadPosRankSum=2.298;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:2,63:67:99:1311,159,0 chrIV 520246 . G A 827 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;QD=18.80;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:860,102,0 chrIV 520247 . G A 828 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.03;MQ0=0;QD=19.26;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:861,102,0 chrIV 520268 . A G 418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.37;MQ0=0;MQRankSum=-0.485;QD=16.72;ReadPosRankSum=1.595;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:1,24:25:57:451,57,0 chrIV 520309 . G A 72.51 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.06;MQ0=0;QD=8.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:12:105,12,0 chrIV 520315 . G A 226 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.68;MQ0=0;QD=18.83;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:30:259,30,0 chrIV 520322 . T A 283 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.22;MQ0=0;QD=17.69;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:36:316,36,0 chrIV 520334 . T C 523 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=20.12;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:63:556,63,0 chrIV 520389 . C T 857 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.79;MQ0=0;QD=21.42;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:890,102,0 chrIV 520839 . C T 72.51 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;QD=1.32;SB=-4.852e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:12:105,12,0 chrIV 520841 . T A 99.26 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.46;MQ0=0;QD=1.77;SB=-8.127e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:15:132,15,0 chrIV 520893 . A G 522 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.38;MQ0=0;QD=11.11;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:63:555,63,0 chrIV 520928 . T C 507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.94;MQ0=0;MQRankSum=0.380;QD=12.37;ReadPosRankSum=1.648;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:63:540,63,0 chrIV 520940 . G A 431 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;QD=12.68;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:51:464,51,0 chrIV 520944 . G T 551 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.81;MQ0=0;QD=13.12;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:72:584,72,0 chrIV 520955 . C G 532 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;QD=12.67;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:69:565,69,0 chrIV 520956 . C T 523 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.98;MQ0=0;QD=11.89;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:69:556,69,0 chrIV 520976 . C T 1168 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.03;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=0;QD=19.15;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1201,135,0 chrIV 521102 . C T 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=77;Dels=0.00;FS=2.943;HaplotypeScore=74.6869;MLEAC=2;MLEAF=1.00;MQ=36.45;MQ0=0;MQRankSum=1.137;QD=19.96;ReadPosRankSum=2.386;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1570,171,0 chrIV 521218 . C A 922 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=160.4485;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.85;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:955,111,0 chrIV 521219 . C T 923 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=83.1278;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.86;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:956,111,0 chrIV 521260 . G A 1000 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=16.8638;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.90;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1033,117,0 chrIV 521409 . A G 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=0;MQRankSum=0.205;QD=21.31;ReadPosRankSum=1.650;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2761,312,0 chrIV 521481 . A G 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;MQRankSum=0.693;QD=21.27;ReadPosRankSum=1.697;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2160,252,0 chrIV 521536 . A G 2277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=110;Dels=0.00;FS=5.344;HaplotypeScore=8.4516;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=2.257;QD=20.70;ReadPosRankSum=2.826;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:3,107:110:99:2310,267,0 chrIV 521623 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.22;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2700,300,0 chrIV 521639 . C T 2557 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.04;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2590,285,0 chrIV 521666 . C A 2612 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.71;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2645,288,0 chrIV 521737 . G T 2776 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.5097;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.39;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2809,312,0 chrIV 521777 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.302;QD=21.47;ReadPosRankSum=1.710;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3350,390,0 chrIV 522274 . G A 3387.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3387,387,0 chrIV 522328 . C T 5514.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.7011;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=25.06;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5514,600,0 chrIV 522551 . A G 6053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=8.2153;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;MQRankSum=-0.207;QD=22.59;ReadPosRankSum=1.719;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:1,267:268:99:6053,681,0 chrIV 522598 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=0;QD=18.76;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4034,441,0 chrIV 522610 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;QD=16.22;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:3163,357,0 chrIV 522622 . T C 2731 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;QD=14.45;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:2764,333,0 chrIV 522628 . C A 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=4.580;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.16;MQ0=0;MQRankSum=-0.467;QD=14.66;ReadPosRankSum=1.401;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:2643,288,0 chrIV 522640 . T C 2383 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=13.54;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:2416,276,0 chrIV 522655 . C A 2595 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=0;QD=14.91;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2628,291,0 chrIV 522661 . C G 2572 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=0;QD=15.04;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2605,297,0 chrIV 522691 . A G 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;MQRankSum=0.510;QD=17.08;ReadPosRankSum=2.416;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2544,285,0 chrIV 522706 . T C 2348 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.22;MQ0=0;QD=17.92;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2381,273,0 chrIV 522718 . G A 2518 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=0;QD=19.22;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2551,279,0 chrIV 522727 . G A 2475 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;QD=19.19;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2508,279,0 chrIV 522733 . G A 2472 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.32;MQ0=0;QD=19.46;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2505,276,0 chrIV 522742 . C T 2489 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=38.18;MQ0=0;QD=19.60;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2522,276,0 chrIV 522793 . C T 2031 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;QD=20.11;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2064,240,0 chrIV 522835 . T A 1558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.450;DP=87;Dels=0.00;FS=6.557;HaplotypeScore=5.1912;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;MQRankSum=-0.081;QD=17.91;ReadPosRankSum=1.531;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1591,194,0 chrIV 522853 . C T 1165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=0;MQRankSum=-0.433;QD=17.92;ReadPosRankSum=1.407;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1198,149,0 chrIV 522860 . T A 1124 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.27;MQ0=0;QD=19.05;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1157,141,0 chrIV 522889 . A C 750 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=17.05;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:783,102,0 chrIV 522913 . G A 158.03 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.41;MQ0=0;QD=12.16;SB=-2.203e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:24:191,24,0 chrIV 522922 . A G 42.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;MQRankSum=1.380;QD=7.16;ReadPosRankSum=1.380;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,4:6:9:75,9,0 chrIV 522969 . C A 200.01 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=9.09;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:233,27,0 chrIV 522979 . T C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=60.8900;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=0.77;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,22:22:6:48,6,0 chrIV 523005 . C T 115.13 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=5.76;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:18:148,18,0 chrIV 523017 . C T 160.03 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=8.89;SB=-4.089e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:24:193,24,0 chrIV 523042 . T C 175.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=7.8346;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=12.50;SB=-2.327e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:27:208,27,0 chrIV 523047 . A T 79.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.97;MQ0=0;MQRankSum=-0.474;QD=7.21;ReadPosRankSum=1.423;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:1,10:11:15:112,15,0 chrIV 523048 . A T 79.26 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=7.93;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:15:112,15,0 chrIV 523054 . A T 103.13 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=10.31;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:136,18,0 chrIV 523083 . A T 87.26 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=0;QD=9.70;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:120,15,0 chrIV 523087 . T C 85.26 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=0;QD=9.47;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:118,15,0 chrIV 523092 . T G 87.26 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=0;QD=9.70;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:120,15,0 chrIV 523113 . C T 38.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=7.79;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:71,9,0 chrIV 523139 . T G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=5.29;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:47,6,0 chrIV 523161 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=2.81;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:48,6,0 chrIV 523166 . T G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=2.81;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:48,6,0 chrIV 523174 . A C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=2.65;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:47,6,0 chrIV 523176 . A G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=2.81;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:48,6,0 chrIV 523193 . G A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=1.78;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:49,6,0 chrIV 523194 . G C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=1.59;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:47,6,0 chrIV 523205 . C G 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=1.32;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:47,6,0 chrIV 523207 . G A 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=1.32;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:47,6,0 chrIV 523208 . G A 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=1.24;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:46,6,0 chrIV 523209 . T G 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=1.24;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:46,6,0 chrIV 523211 . T C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=1.32;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:47,6,0 chrIV 523220 . T C 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=0;QD=1.30;SB=-1.773e+00 GT:AD:DP:GQ:PL 1/1:0,13:13:6:48,6,0 chrIV 523221 . C T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=0;QD=1.37;SB=-1.773e+00 GT:AD:DP:GQ:PL 1/1:0,13:13:6:49,6,0 chrIV 523370 . C T 91.26 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=7.61;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:124,15,0 chrIV 523401 . T C 588 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.37;MQ0=0;QD=18.37;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:84:621,84,0 chrIV 523418 . G A 598 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.37;MQ0=0;QD=18.69;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:84:631,84,0 chrIV 523433 . G C 587 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.37;MQ0=0;QD=18.34;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:84:620,84,0 chrIV 523459 . A C 470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=28;Dels=0.00;FS=12.979;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=19.69;MQ0=0;MQRankSum=-2.674;QD=16.79;ReadPosRankSum=2.748;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:3,25:28:69:503,69,0 chrIV 523471 . G A 119.06 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=11.91;SB=-4.294e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:21:152,21,0 chrIV 523556 . C T 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=7.79;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:71,9,0 chrIV 523559 . G A 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=6.50;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:71,9,0 chrIV 523563 . C T 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=7.50;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:77,9,0 chrIV 523574 . A G 60.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.92;MQ0=0;QD=7.56;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:93,12,0 chrIV 523576 . T G 60.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.92;MQ0=0;QD=7.56;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:93,12,0 chrIV 523585 . G A 102.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.42;MQ0=0;QD=9.28;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:135,18,0 chrIV 523592 . G A 102.13 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.21;MQ0=0;QD=7.86;SB=-1.410e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:135,18,0 chrIV 523598 . A T 124.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.05;MQ0=0;QD=8.27;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:157,21,0 chrIV 523600 . A T 124.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.05;MQ0=0;QD=8.27;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:157,21,0 chrIV 523616 . G A 146.03 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.83;MQ0=0;QD=7.69;SB=-2.204e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:24:179,24,0 chrIV 523625 . C T 145.03 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.83;MQ0=0;QD=7.63;SB=-2.204e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:24:178,24,0 chrIV 523628 . G A 145.03 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.79;MQ0=0;QD=7.25;SB=-2.204e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:24:178,24,0 chrIV 523637 . A G 97.13 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=5.11;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:18:130,18,0 chrIV 523655 . T C 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.89;SB=-2.252e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:87,12,0 chrIV 523661 . G A 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.54;SB=-2.252e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:87,12,0 chrIV 523665 . G A 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.96;SB=-2.251e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:87,12,0 chrIV 523667 . A T 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.96;SB=-2.251e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:87,12,0 chrIV 523886 . C T 54.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=10.90;SB=-2.155e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:87,12,0 chrIV 523898 . A G 54.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrIV 523907 . T A 54.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrIV 523913 . T A 54.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;MQRankSum=-0.731;QD=10.90;ReadPosRankSum=0.731;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,4:5:12:87,12,0 chrIV 523919 . G A 75.26 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=15.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:108,15,0 chrIV 523936 . C G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=4.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrIV 523946 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=4.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrIV 523969 . G C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=2.41;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrIV 523979 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=2.41;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrIV 523982 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=2.41;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrIV 524000 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=2.41;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrIV 524036 . G A 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=7.59;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:70,9,0 chrIV 524038 . C T 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=7.79;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:71,9,0 chrIV 524045 . A T 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=6.33;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:70,9,0 chrIV 524048 . C T 60.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=10.09;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:93,12,0 chrIV 524054 . G T 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=11.09;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:99,12,0 chrIV 524078 . T G 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=6.50;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:71,9,0 chrIV 524081 . G A 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=7.00;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:74,9,0 chrIV 524086 . C T 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=5.37;SB=-6.547e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:75,9,0 chrIV 524096 . A G 42.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=5.37;SB=-6.572e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:75,9,0 chrIV 524111 . G A 46.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=0;QD=5.22;SB=-6.585e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:79,9,0 chrIV 524117 . T C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=2.60;SB=-2.364e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:6:52,6,0 chrIV 524144 . G A 32.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=3.30;SB=-7.872e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:65,9,0 chrIV 524186 . A T 251 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=19.31;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:36:284,36,0 chrIV 524201 . G A 247 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=20.58;SB=-1.129e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:36:280,36,0 chrIV 524225 . T A 227 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.13;MQ0=0;QD=20.64;SB=-9.194e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:33:260,33,0 chrIV 524228 . A G 224 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.13;MQ0=0;QD=20.36;SB=-9.094e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:33:257,33,0 chrIV 524270 . A T 51.97 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=10.39;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:84,9,0 chrIV 524294 . G A 227 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=0;QD=20.64;SB=-1.199e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:30:260,30,0 chrIV 524346 . T G 259 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=21.58;SB=-1.149e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:36:292,36,0 chrIV 524359 . T C 178.01 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.72;MQ0=0;QD=14.83;SB=-9.089e+01 GT:AD:DP:GQ:PL 1/1:0,10:12:27:211,27,0 chrIV 524366 . C T 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=5.71;SB=-4.372e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:72,9,0 chrIV 524370 . G T 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=8.99;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:77,9,0 chrIV 524371 . C T 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=8.19;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:73,9,0 chrIV 524375 . T C 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=8.19;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:73,9,0 chrIV 524380 . T G 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=8.19;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:73,9,0 chrIV 524381 . G C 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=8.39;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:74,9,0 chrIV 524384 . A G 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=3.57;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:49,6,0 chrIV 524386 . A T 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=7.79;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:71,9,0 chrIV 524391 . A T 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=8.59;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:75,9,0 chrIV 524392 . A G 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=8.19;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:73,9,0 chrIV 524394 . A G 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=8.19;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:73,9,0 chrIV 524408 . T C 41.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=6.00;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:74,9,0 chrIV 524411 . A G 37.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=5.42;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:70,9,0 chrIV 524474 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrIV 524475 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrIV 524477 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrIV 524483 . T G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrIV 524492 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrIV 524498 . A G 36.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=9.24;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:69,9,0 chrIV 524527 . C T 62.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=12.50;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:95,12,0 chrIV 524528 . G A 67.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=13.50;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:100,12,0 chrIV 524534 . A G 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=12.30;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:94,12,0 chrIV 524546 . T G 62.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=10.42;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:1,5:6:12:95,12,0 chrIV 524560 . G A 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.60;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:54,6,0 chrIV 524561 . C A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.26;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:53,6,0 chrIV 524564 . G A 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.26;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:56,6,0 chrIV 524576 . T G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:51,6,0 chrIV 524582 . T C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:48,6,0 chrIV 525299 . G C 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=2.13;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:46,6,0 chrIV 525302 . G T 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=5.42;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:70,9,0 chrIV 525309 . C T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=2.97;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:49,6,0 chrIV 525314 . A T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=2.97;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:49,6,0 chrIV 525488 . C T 314 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=19.62;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:48:347,48,0 chrIV 525499 . C T 314 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=19.62;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:48:347,48,0 chrIV 525504 . C T 314 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=19.62;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:48:347,48,0 chrIV 525511 . G A 314 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=19.62;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:48:347,48,0 chrIV 525523 . C T 249 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=19.15;SB=-1.299e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:39:282,39,0 chrIV 525607 . G T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrIV 525622 . A G 54.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrIV 525629 . T C 54.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrIV 525637 . T C 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrIV 525640 . C T 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrIV 525641 . C T 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrIV 525655 . A G 97.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.88;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,7:7:18:130,18,0 chrIV 525658 . T C 97.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.88;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,7:7:18:130,18,0 chrIV 525679 . A G 119.06 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=14.88;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:21:152,21,0 chrIV 525682 . T C 119.06 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=14.88;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:21:152,21,0 chrIV 525700 . T C 97.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.88;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,7:7:18:130,18,0 chrIV 525703 . C T 75.26 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=10.75;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:108,15,0 chrIV 525706 . A G 75.26 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=12.54;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:108,15,0 chrIV 525715 . A T 54.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=7.79;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:87,12,0 chrIV 525718 . C T 97.13 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.88;SB=-4.288e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:18:130,18,0 chrIV 525754 . G A 140.03 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=11.67;SB=-4.302e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:24:173,24,0 chrIV 525757 . C T 140.03 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=9.34;SB=-4.303e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:24:173,24,0 chrIV 525760 . G A 184 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=12.27;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:30:217,30,0 chrIV 525766 . A G 150.03 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=10.72;SB=-2.204e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:24:183,24,0 chrIV 525772 . G C 170.01 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.03;MQ0=0;QD=10.63;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:27:203,27,0 chrIV 525793 . C T 129.06 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.34;MQ0=0;QD=6.45;SB=-7.496e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:21:162,21,0 chrIV 525805 . G A 109.13 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=0;QD=4.96;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:18:142,18,0 chrIV 525814 . A C 83.26 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=0;QD=3.20;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:15:116,15,0 chrIV 525820 . T C 137.06 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.03;MQ0=0;QD=5.08;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:21:170,21,0 chrIV 525850 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;QD=1.28;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,17:17:6:53,6,0 chrIV 525862 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=1.39;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,15:15:6:52,6,0 chrIV 525868 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;QD=1.41;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:51,6,0 chrIV 525877 . C T 27.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=2.31;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:59,6,0 chrIV 525883 . T C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;MQRankSum=1.044;QD=2.08;ReadPosRankSum=1.393;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:1,9:10:6:52,6,0 chrIV 525907 . C A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=3.37;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:48,6,0 chrIV 525916 . G A 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=3.14;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:50,6,0 chrIV 525919 . C T 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=3.80;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:54,6,0 chrIV 525923 . T C 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=2.81;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:48,6,0 chrIV 525924 . G A 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=2.81;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:48,6,0 chrIV 525934 . C A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=2.97;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:49,6,0 chrIV 525937 . T C 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=2.81;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:48,6,0 chrIV 525940 . C T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=2.97;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:49,6,0 chrIV 525946 . G A 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;QD=2.41;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:48,6,0 chrIV 525955 . C T 60.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=6.72;SB=-4.345e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:93,12,0 chrIV 525967 . G A 225 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.19;MQ0=0;QD=11.84;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:33:258,33,0 chrIV 525976 . C T 468 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.19;MQ0=0;QD=14.62;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:60:501,60,0 chrIV 525988 . G A 662 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=0;QD=15.40;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:81:695,81,0 chrIV 526042 . C T 1029 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.98;MQ0=0;QD=23.39;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1062,123,0 chrIV 526063 . A G 618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=33;Dels=0.00;FS=9.887;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;MQRankSum=-1.409;QD=18.73;ReadPosRankSum=2.787;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:3,30:33:78:651,78,0 chrIV 526072 . A T 423 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.82;MQ0=0;QD=22.26;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:54:456,54,0 chrIV 526087 . A G 111.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.637;DP=12;Dels=0.00;FS=26.946;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;MQRankSum=-0.289;QD=9.26;ReadPosRankSum=2.637;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:4,8:12:18:144,18,0 chrIV 526090 . T A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=4.95;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:51,6,0 chrIV 526099 . C T 50.97 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=7.28;SB=-2.885e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:83,9,0 chrIV 526102 . T C 42.97 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=0;QD=3.31;SB=-2.696e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:75,9,0 chrIV 526111 . A G 43.97 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=0;QD=2.31;SB=-6.898e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:9:76,9,0 chrIV 526117 . G A 158.06 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=6.59;SB=-1.791e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:21:191,21,0 chrIV 526135 . G A 342 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=0;QD=8.77;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:42:375,42,0 chrIV 526183 . T C 492 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.48;MQ0=0;QD=6.56;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:63:525,63,0 chrIV 526186 . C T 609 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;QD=8.12;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:72:642,72,0 chrIV 526215 . G A 462 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=0;QD=6.51;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:57:495,57,0 chrIV 526219 . T C 420 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=6.00;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:54:453,54,0 chrIV 526222 . G A 395 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=5.81;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:51:428,51,0 chrIV 526246 . A G 421 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.32;MQ0=0;QD=7.26;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:57:454,57,0 chrIV 526267 . T C 397 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=6.40;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:54:430,54,0 chrIV 526282 . T C 304 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=0;QD=5.53;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:42:337,42,0 chrIV 526285 . C T 311 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.35;MQ0=0;QD=5.55;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:42:344,42,0 chrIV 526288 . T C 274 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;MQRankSum=-0.652;QD=4.98;ReadPosRankSum=2.360;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:39:307,39,0 chrIV 526297 . T C 261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.00;MQ0=0;MQRankSum=-0.271;QD=4.08;ReadPosRankSum=1.678;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:36:294,36,0 chrIV 526303 . C A 431 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=6.34;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:57:464,57,0 chrIV 526354 . G A 2016 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.31;MQ0=0;QD=17.53;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2049,243,0 chrIV 526357 . C T 2167 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;QD=18.36;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2200,252,0 chrIV 526372 . T C 2448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=133;Dels=0.00;FS=2.954;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=34.31;MQ0=0;MQRankSum=-1.174;QD=18.41;ReadPosRankSum=2.413;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2481,302,0 chrIV 526420 . T C 2117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=117;Dels=0.00;FS=3.326;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=0;MQRankSum=0.820;QD=18.09;ReadPosRankSum=1.702;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,113:117:99:2150,266,0 chrIV 526429 . C T 1939 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=29.77;MQ0=0;QD=19.79;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:1972,234,0 chrIV 526456 . C T 2261 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;QD=21.13;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2294,284,0 chrIV 526480 . C T 1134 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.33;MQ0=0;QD=19.55;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1167,152,0 chrIV 526483 . T G 1137 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.47;MQ0=0;QD=19.27;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1170,152,0 chrIV 526495 . T C 1541 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=0;QD=19.76;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1574,200,0 chrIV 526549 . T C 2170 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;QD=19.73;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2203,266,0 chrIV 526558 . T C 2290 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.59;MQ0=0;QD=19.41;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2323,278,0 chrIV 526591 . C T 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.315;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.7942;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;MQRankSum=-1.347;QD=17.06;ReadPosRankSum=1.572;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1892,233,0 chrIV 526594 . A G 1735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.7942;MLEAC=2;MLEAF=1.00;MQ=32.84;MQ0=0;MQRankSum=-1.603;QD=16.21;ReadPosRankSum=1.667;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1768,221,0 chrIV 526633 . C T 751 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=13.18;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:784,99,0 chrIV 526636 . C T 701 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=13.23;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:93:734,93,0 chrIV 526651 . A G 564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.80;MQ0=0;MQRankSum=-1.490;QD=12.82;ReadPosRankSum=2.840;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:3,41:44:78:597,78,0 chrIV 526657 . G A 490 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.83;MQ0=0;QD=12.89;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:66:523,66,0 chrIV 526669 . T C 470 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.72;MQ0=0;QD=13.82;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:63:503,63,0 chrIV 526675 . C T 495 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.27;MQ0=0;QD=14.14;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,34:35:63:528,63,0 chrIV 526687 . T C 505 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=0;QD=13.65;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:66:538,66,0 chrIV 526693 . A G 478 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.72;MQ0=0;QD=14.06;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:63:511,63,0 chrIV 526699 . A C 542 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.70;MQ0=0;QD=13.90;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:72:575,72,0 chrIV 526727 . A G 745 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.29;MQ0=0;QD=12.21;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:96:778,96,0 chrIV 526734 . T C 685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=62;Dels=0.00;FS=14.539;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.58;MQ0=0;MQRankSum=-0.098;QD=11.05;ReadPosRankSum=2.887;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:3,59:62:87:718,87,0 chrIV 526741 . C T 799 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=12.11;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:832,102,0 chrIV 526747 . A G 794 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.01;MQ0=0;QD=10.88;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:827,102,0 chrIV 526763 . C T 735 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.09;MQ0=0;QD=10.21;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:93:768,93,0 chrIV 526783 . A G 822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;MQRankSum=0.157;QD=10.68;ReadPosRankSum=1.687;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:855,108,0 chrIV 526795 . C T 688 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=0;QD=10.12;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:90:721,90,0 chrIV 526810 . T C 508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.24;MQ0=0;MQRankSum=0.456;QD=8.76;ReadPosRankSum=2.879;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:3,55:58:69:541,69,0 chrIV 526837 . T C 440 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.96;MQ0=0;QD=11.58;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:63:473,63,0 chrIV 526840 . C T 423 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.96;MQ0=0;QD=11.13;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:60:456,60,0 chrIV 526864 . A G 405 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.50;MQ0=0;QD=13.06;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:60:438,60,0 chrIV 526882 . T C 335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;MQRankSum=-0.226;QD=14.57;ReadPosRankSum=1.583;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,22:23:51:368,51,0 chrIV 526888 . G T 357 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=17.00;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:54:390,54,0 chrIV 526918 . A T 400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=26;Dels=0.00;FS=9.556;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;MQRankSum=-0.048;QD=15.38;ReadPosRankSum=2.261;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:2,24:26:60:433,60,0 chrIV 526927 . G A 379 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=14.58;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:57:412,57,0 chrIV 526942 . C A 735 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.84;MQ0=0;QD=16.70;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,42:44:99:768,99,0 chrIV 526957 . C T 1411 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.05;MQ0=0;QD=18.81;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1444,174,0 chrIV 526978 . A G 1666 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.36;MQ0=0;QD=20.07;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1699,206,0 chrIV 527002 . A G 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=3.049;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=0;MQRankSum=1.713;QD=21.60;ReadPosRankSum=2.322;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1696,201,0 chrIV 527050 . T C 728 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=0;QD=18.67;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,36:39:99:761,101,0 chrIV 527056 . T C 444 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.04;MQ0=0;QD=14.80;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:66:477,66,0 chrIV 527057 . C T 444 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.04;MQ0=0;QD=14.80;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:66:477,66,0 chrIV 527080 . T C 512 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=18.29;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:75:545,75,0 chrIV 527095 . T C 490 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.11;MQ0=0;QD=16.90;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:72:523,72,0 chrIV 527108 . C T 296 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.88;MQ0=0;QD=16.44;SB=-6.759e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:45:329,45,0 chrIV 527122 . G A 298 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.79;MQ0=0;QD=14.90;SB=-6.777e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:45:331,45,0 chrIV 527128 . C T 319 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=15.19;SB=-6.653e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:48:352,48,0 chrIV 527134 . C T 371 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=0;QD=14.27;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:54:404,54,0 chrIV 527149 . C T 460 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.32;MQ0=0;QD=15.86;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:63:493,63,0 chrIV 527179 . T C 575 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.10;MQ0=0;QD=16.91;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:75:608,75,0 chrIV 527206 . A G 543 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.74;MQ0=0;MQRankSum=0.917;QD=15.97;ReadPosRankSum=1.631;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,33:34:72:576,72,0 chrIV 527210 . A C 553 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.96;MQ0=0;QD=16.76;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:72:586,72,0 chrIV 527217 . C A 564 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=17.09;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:72:597,72,0 chrIV 527222 . A C 475 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.40;MQ0=0;MQRankSum=-1.733;QD=15.32;ReadPosRankSum=1.621;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:1,30:31:66:508,66,0 chrIV 527227 . T G 485 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=24.82;MQ0=0;QD=17.96;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:66:518,66,0 chrIV 527236 . A G 392 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.25;MQ0=0;QD=16.33;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:54:425,54,0 chrIV 527249 . A G 298 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=0;MQRankSum=0.578;QD=14.19;ReadPosRankSum=1.569;SB=-7.033e-03 GT:AD:DP:GQ:PL 1/1:1,20:21:42:331,42,0 chrIV 527253 . T C 249 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=13.83;SB=-8.563e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:36:282,36,0 chrIV 527269 . G A 125.06 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=12.51;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:158,21,0 chrIV 527271 . G A 124.06 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=12.41;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:157,21,0 chrIV 527719 . G A 32.97 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.76;MQ0=16;QD=1.74;SB=-2.121e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:9:65,9,0 chrIV 527746 . T C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.41;MQ0=5;QD=4.12;SB=-2.121e+01 GT:AD:DP:GQ:PL 1/1:1,7:8:9:65,9,0 chrIV 527747 . C T 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.13;MQ0=4;QD=4.71;SB=-2.121e+01 GT:AD:DP:GQ:PL 1/1:1,6:7:9:65,9,0 chrIV 527749 . G A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.02;MQ0=4;QD=4.12;SB=-2.121e+01 GT:AD:DP:GQ:PL 1/1:0,7:8:9:65,9,0 chrIV 527761 . G A 97.13 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.14;MQ0=3;QD=7.47;SB=-4.263e+01 GT:AD:DP:GQ:PL 1/1:0,12:13:18:130,18,0 chrIV 527809 . G A 230 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.69;MQ0=0;QD=13.53;SB=-8.563e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:36:263,36,0 chrIV 527829 . G A 239 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.93;MQ0=0;QD=14.06;SB=-8.632e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:36:272,36,0 chrIV 527839 . G A 233 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.88;MQ0=0;QD=12.94;SB=-8.666e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:36:266,36,0 chrIV 527845 . C T 211 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.83;MQ0=0;QD=11.11;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:33:244,33,0 chrIV 527860 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.64;MQ0=0;QD=1.00;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:43,6,0 chrIV 527947 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.66;SB=-8.772e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrIV 527950 . C G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.55;MQ0=0;QD=3.30;SB=-8.785e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:65,9,0 chrIV 527953 . T C 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.97;MQ0=0;QD=4.54;SB=-8.745e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:87,12,0 chrIV 527956 . T C 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.97;MQ0=0;QD=4.54;SB=-6.549e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:87,12,0 chrIV 527962 . A G 97.13 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.78;MQ0=0;QD=6.48;SB=-4.314e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:18:130,18,0 chrIV 527965 . T G 97.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.83;MQ0=0;QD=6.94;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:130,18,0 chrIV 527968 . A G 97.13 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.90;MQ0=0;QD=7.47;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:130,18,0 chrIV 527977 . G A 97.13 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.90;MQ0=0;QD=7.47;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:130,18,0 chrIV 527980 . C A 97.13 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.90;MQ0=0;QD=7.47;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:130,18,0 chrIV 527983 . T G 97.13 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.90;MQ0=0;QD=7.47;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:130,18,0 chrIV 527985 . T C 97.13 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.90;MQ0=0;QD=7.47;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:130,18,0 chrIV 527989 . T C 97.13 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.90;MQ0=0;QD=7.47;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:130,18,0 chrIV 527991 . T A 97.13 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.90;MQ0=0;QD=7.47;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:130,18,0 chrIV 527994 . T A 119.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.83;MQ0=0;QD=8.50;SB=-7.388e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:21:152,21,0 chrIV 527998 . A G 119.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.83;MQ0=0;QD=8.50;SB=-7.388e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:21:152,21,0 chrIV 528013 . T G 119.06 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.83;MQ0=0;QD=8.50;SB=-7.388e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:21:152,21,0 chrIV 528022 . C T 140.03 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.47;MQ0=0;QD=8.75;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:24:173,24,0 chrIV 528028 . T G 162.01 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.40;MQ0=0;QD=8.53;SB=-2.327e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:27:195,27,0 chrIV 528043 . C T 295 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=18.03;MQ0=0;QD=13.41;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:45:328,45,0 chrIV 528052 . A G 275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.58;MQ0=0;MQRankSum=-0.694;QD=13.75;ReadPosRankSum=1.561;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:1,19:20:42:308,42,0 chrIV 528070 . C T 280 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.66;MQ0=0;QD=14.74;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:42:313,42,0 chrIV 528112 . A G 239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=19.07;MQ0=0;MQRankSum=-1.416;QD=14.06;ReadPosRankSum=2.162;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:2,15:17:36:272,36,0 chrIV 537970 . T C 99.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.143;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;MQRankSum=-0.556;QD=6.20;ReadPosRankSum=2.143;SB=-2.718e-01 GT:AD:DP:GQ:PL 1/1:2,14:16:15:132,15,0 chrIV 537976 . C T 156.06 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=8.21;SB=-7.494e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:21:189,21,0 chrIV 537994 . A G 170.03 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;QD=5.86;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:24:203,24,0 chrIV 538009 . C T 284.10 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;MQRankSum=-0.139;QD=5.68;ReadPosRankSum=1.386;SB=-1.145e-01 GT:AD:DP:GQ:PL 1/1:1,49:50:19:317,19,0 chrIV 538030 . C G 440 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=6.20;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:57:473,57,0 chrIV 538039 . T G 488 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;MQRankSum=-1.488;QD=5.74;ReadPosRankSum=1.691;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:1,84:85:60:521,60,0 chrIV 538042 . G A 548 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=6.45;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:66:581,66,0 chrIV 538051 . C T 567 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=6.59;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:66:600,66,0 chrIV 538054 . A G 570 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=6.71;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:72:603,72,0 chrIV 538057 . T C 574 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;MQRankSum=1.515;QD=6.60;ReadPosRankSum=2.393;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:2,85:87:69:607,69,0 chrIV 538066 . C T 681 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=7.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,95:95:78:714,78,0 chrIV 538069 . A G 656 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=7.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:78:689,78,0 chrIV 538082 . T C 710 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.475;QD=7.40;ReadPosRankSum=2.398;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,94:96:84:743,84,0 chrIV 538120 . G T 890 filter AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:923,102,0 chrIV 538141 . T A 1204 filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1237,141,0 chrIV 538156 . A G 855 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:888,108,0 chrIV 538159 . G A 912 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:945,108,0 chrIV 538162 . C A 893 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:926,105,0 chrIV 538163 . G C 868 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:901,105,0 chrIV 538165 . G C 868 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:901,105,0 chrIV 538167 . T C 852 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:885,102,0 chrIV 538168 . A G 863 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=9.18;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:99:896,108,0 chrIV 538174 . A G 1096 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=6.34;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,173:173:99:1129,132,0 chrIV 538183 . G A 1439 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.8105;MLEAC=2;MLEAF=1.00;MQ=31.90;MQ0=0;QD=7.42;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,193:194:99:1472,162,0 chrIV 538221 . T C 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.7382;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=0;MQRankSum=-1.362;QD=13.48;ReadPosRankSum=2.426;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:2863,330,0 chrIV 538355 . G C 4698.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=12.2628;MLEAC=2;MLEAF=1.00;MQ=42.23;MQ0=0;QD=19.33;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:4698,534,0 chrIV 538516 . A G 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.8307;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.184;QD=20.73;ReadPosRankSum=2.353;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2666,306,0 chrIV 538561 . T A 2434 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.96;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2467,273,0 chrIV 538587 . T A 1777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.173;DP=90;Dels=0.00;FS=12.706;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=0.761;QD=19.74;ReadPosRankSum=2.311;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1810,201,0 chrIV 538660 . T C 1708 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=22.77;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1741,195,0 chrIV 538707 . T A 823 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=22.86;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:856,96,0 chrIV 538829 . G A 455 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;QD=21.67;SB=-6.550e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:54:488,54,0 chrIV 538865 . C A 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.063;DP=75;Dels=0.00;FS=207.075;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=31.20;MQ0=0;MQRankSum=-1.289;QD=0.28;ReadPosRankSum=5.674;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:29,46:75:51:51,0,535 chrIV 538867 . C T 18.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.902;DP=75;Dels=0.00;FS=207.075;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=31.20;MQ0=0;MQRankSum=-1.485;QD=0.24;ReadPosRankSum=7.186;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:29,46:75:48:48,0,499 chrIV 538869 . C G 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;DP=75;Dels=0.00;FS=207.075;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=31.20;MQ0=0;MQRankSum=-1.888;QD=0.25;ReadPosRankSum=7.251;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:29,46:75:49:49,0,530 chrIV 538990 . T G 994 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.59;MQ0=0;QD=13.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1027,114,0 chrIV 539097 . G T 2836 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;QD=18.18;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2869,321,0 chrIV 539136 . G A 4223.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.2524;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=22.34;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4223,465,0 chrIV 539195 . T C 3584.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.2148;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=18.38;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3584,399,0 chrIV 539207 . T C 3551.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.4499;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=18.59;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:3551,414,0 chrIV 539468 . C T 3747.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.99;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3747,423,0 chrIV 539523 . C T 2922 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.49;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2955,330,0 chrIV 539560 . C A 3722.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.7186;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.56;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3722,411,0 chrIV 539648 . T G 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=3.839;HaplotypeScore=14.6576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.218;QD=21.86;ReadPosRankSum=1.711;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3672,417,0 chrIV 540280 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.7662;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.88;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3363,369,0 chrIV 540452 . G A 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=110;Dels=0.00;FS=4.652;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.353;QD=23.15;ReadPosRankSum=-0.770;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2580,261,0 chrIV 540514 . A T 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9563;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.288;QD=23.40;ReadPosRankSum=1.703;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2771,303,0 chrIV 540984 . A G 2334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=3.573;HaplotypeScore=6.2999;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.214;QD=21.61;ReadPosRankSum=1.635;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2367,264,0 chrIV 541003 . T C 2420 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.62;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2453,273,0 chrIV 541053 . T C 1975 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.94;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2008,228,0 chrIV 541214 . G A 2436 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=12.7021;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.37;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2469,267,0 chrIV 541324 . C T 2061 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.42;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2094,228,0 chrIV 541548 . A G 3465.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.65;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3465,396,0 chrIV 541567 . A G 3217.04 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.0466;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.34;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3250,366,0 chrIV 541727 . T C 3373.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.19;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3373,387,0 chrIV 541830 . T C 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=128;Dels=0.00;FS=9.273;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;MQRankSum=0.378;QD=17.69;ReadPosRankSum=2.372;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2297,258,0 chrIV 541850 . T C 47.97 filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.08;MQ0=0;QD=0.42;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:9:80,9,0 chrIV 541854 . G T 2059 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.12;MQ0=0;QD=17.75;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2092,234,0 chrIV 541868 . C T 1961 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.25;MQ0=0;QD=16.34;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1994,234,0 chrIV 541985 . T A 2367 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=22.33;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2400,261,0 chrIV 541994 . A G 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=113;Dels=0.00;FS=4.079;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-1.732;QD=20.81;ReadPosRankSum=1.669;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,109:113:99:2384,276,0 chrIV 542041 . C T 2349 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=21.16;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2382,264,0 chrIV 542066 . T A 2179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=0.968;QD=20.95;ReadPosRankSum=2.402;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2212,249,0 chrIV 542116 . G A 2541 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=23.97;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2574,276,0 chrIV 542141 . C G 2389 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.72;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2422,276,0 chrIV 542146 . A G 2391 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.61;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2424,279,0 chrIV 542914 . C T 3002 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3035,324,0 chrIV 543883 . T A 1772 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=21.10;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1805,195,0 chrIV 544280 . T G 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-1.526;QD=21.75;ReadPosRankSum=1.698;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2230,255,0 chrIV 544593 . G T 3700.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.67;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3700,420,0 chrIV 544641 . C T 2685 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=20.81;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2718,300,0 chrIV 545003 . T A 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.501;DP=69;Dels=0.00;FS=2.304;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=0;MQRankSum=-3.905;QD=0.20;ReadPosRankSum=4.025;SB=-2.267e+02 GT:AD:DP:GQ:PL 1/1:7,62:69:6:45,6,0 chrIV 545013 . T C 792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=63.1291;MLEAC=2;MLEAF=1.00;MQ=34.46;MQ0=0;MQRankSum=-2.039;QD=10.15;ReadPosRankSum=2.387;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:93:825,93,0 chrIV 545047 . G A 1903 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=16.26;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:1936,210,0 chrIV 545137 . T C 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=161;Dels=0.00;FS=2.874;HaplotypeScore=14.2706;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-0.518;QD=21.86;ReadPosRankSum=2.419;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:3519,396,0 chrIV 545171 . G A 4029.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=23.42;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4029,453,0 chrIV 545216 . C T 5171.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=24.39;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5171,561,0 chrIV 545314 . A G 3546.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=20.86;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3546,420,0 chrIV 545325 . G A 4061.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.93;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4061,444,0 chrIV 545374 . C T 5028.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=15.1857;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.19;SB=-3.012e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5028,564,0 chrIV 545483 . A G 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=200;Dels=0.00;FS=2.968;HaplotypeScore=9.0507;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-0.974;QD=19.53;ReadPosRankSum=2.425;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:2,196:200:99:3906,444,0 chrIV 545487 . A T 4186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.5411;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.052;QD=21.14;ReadPosRankSum=1.662;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4186,462,0 chrIV 545729 . C A 2710 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.07;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2743,297,0 chrIV 545751 . C G 2262 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=18.39;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2295,267,0 chrIV 546108 . A C 2739 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.45;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2772,312,0 chrIV 546427 . A G 2364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=120;Dels=0.00;FS=2.681;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.527;QD=19.70;ReadPosRankSum=2.408;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2397,267,0 chrIV 546618 . G C 4180.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.1338;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.35;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4180,486,0 chrIV 547031 . G A 7894.01 PASS AC=2;AF=1.00;AN=2;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=24.4491;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.15;SB=-3.215e+03 GT:AD:DP:GQ:PL 1/1:0,340:341:99:7894,867,0 chrIV 547073 . G C 7680.01 PASS AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=19.0129;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.79;SB=-3.058e+03 GT:AD:DP:GQ:PL 1/1:0,335:337:99:7680,894,0 chrIV 547241 . C T 9796.01 filter AC=2;AF=1.00;AN=2;DP=413;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.72;SB=-5.013e+03 GT:AD:DP:GQ:PL 1/1:0,412:413:99:9796,1072,0 chrIV 547556 . C T 2974 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.4441;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.38;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3007,324,0 chrIV 547830 . G C 1710 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.85;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1743,201,0 chrIV 547842 . A C 1726 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.55;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1759,198,0 chrIV 547902 . G A 1787 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.31;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1820,204,0 chrIV 548321 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.5486;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.14;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3133,345,0 chrIV 548658 . G A 2063 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.0523;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.42;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2096,231,0 chrIV 548809 . A G 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=125;Dels=0.00;FS=4.393;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.616;QD=20.86;ReadPosRankSum=1.703;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,120:125:99:2641,303,0 chrIV 548909 . A G 2958 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.7491;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.58;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2991,351,0 chrIV 548950 . T G 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=156;Dels=0.00;FS=2.683;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.752;QD=23.84;ReadPosRankSum=2.386;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3719,423,0 chrIV 549236 . T C 5907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=15.9036;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.047;QD=22.81;ReadPosRankSum=1.665;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:1,258:259:99:5907,678,0 chrIV 549617 . C G 5266.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=16.8538;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.80;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:5266,603,0 chrIV 549856 . C T 4815.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.7701;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.71;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4815,514,0 chrIV 550499 . A G 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=181;Dels=0.00;FS=3.004;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.336;QD=22.90;ReadPosRankSum=2.408;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:4145,468,0 chrIV 550660 . T G 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=154;Dels=0.00;FS=3.039;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.795;QD=18.89;ReadPosRankSum=2.418;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:2942,342,0 chrIV 550672 . G A 3309.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.81;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3309,360,0 chrIV 550727 . A T 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.137;QD=21.07;ReadPosRankSum=1.709;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3256,348,0 chrIV 550893 . C G 4140.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.62;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4140,471,0 chrIV 551018 . C T 3838.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.9817;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.19;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3838,438,0 chrIV 551063 . C G 4626.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.68;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4626,516,0 chrIV 551101 . A G 4640.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.5643;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.97;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4640,525,0 chrIV 551284 . G A 3738.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.5283;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.57;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3738,420,0 chrIV 551290 . C T 4111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=206;Dels=0.00;FS=3.454;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.682;QD=19.96;ReadPosRankSum=1.194;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4111,441,0 chrIV 551387 . C A 4238.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.54;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,174:180:99:4238,477,0 chrIV 551587 . T C 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=3.645;HaplotypeScore=7.5716;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=1.631;QD=19.15;ReadPosRankSum=1.598;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:3983,444,0 chrIV 551702 . C T 2509 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=22.20;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2542,285,0 chrIV 551843 . G T 1134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.882;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=20.0227;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=-1.373;QD=10.12;ReadPosRankSum=1.667;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,106:112:99:1167,135,0 chrIV 552354 . T C 2866 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.4865;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.39;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2899,342,0 chrIV 552597 . A G 4570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=4.015;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.337;QD=24.84;ReadPosRankSum=1.713;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4570,519,0 chrIV 552628 . G A 4773.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.7142;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.73;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4773,522,0 chrIV 552943 . A C 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.759;QD=20.94;ReadPosRankSum=2.942;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2567,291,0 chrIV 553031 . G A 1782 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=13.0867;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=16.20;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1815,210,0 chrIV 553189 . A G 2237 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2270,267,0 chrIV 553497 . G A 3996.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.37;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3996,453,0 chrIV 553575 . G A 2652 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=21.39;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2685,291,0 chrIV 553583 . A G 2538 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=20.30;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2571,294,0 chrIV 553591 . A G 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=0.380;QD=19.39;ReadPosRankSum=1.704;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2418,276,0 chrIV 553624 . G T 2707 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=19.62;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2740,303,0 chrIV 553651 . G A 2925 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=19.50;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2958,327,0 chrIV 553670 . C T 3123 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.96;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3156,345,0 chrIV 553817 . G A 3134 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=23.39;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3167,354,0 chrIV 553867 . C G 2089 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=18.65;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2122,240,0 chrIV 553868 . G A 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=108;Dels=0.00;FS=7.387;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;MQRankSum=-0.679;QD=20.40;ReadPosRankSum=2.404;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2236,246,0 chrIV 553883 . A G 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=118;Dels=0.00;FS=4.624;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;MQRankSum=1.433;QD=18.68;ReadPosRankSum=1.702;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2237,258,0 chrIV 553976 . G A 4459.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.37;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4459,516,0 chrIV 554102 . C T 3710.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=21.57;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3710,417,0 chrIV 554114 . C G 3354.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.08;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3354,384,0 chrIV 554794 . A G 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.9954;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=0.256;QD=21.29;ReadPosRankSum=2.417;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3227,363,0 chrIV 554811 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=19.67;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2983,327,0 chrIV 554837 . T C 2940 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=18.15;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2973,348,0 chrIV 555026 . A G 2316 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.85;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2349,267,0 chrIV 555214 . A G 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.037;QD=22.66;ReadPosRankSum=1.695;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2163,255,0 chrIV 555283 . C T 1883 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.40;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,85:88:99:1916,216,0 chrIV 555346 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=19.89;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1445,156,0 chrIV 555362 . C T 1256 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=16.75;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1289,144,0 chrIV 555365 . C A 1339 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;QD=17.62;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1372,150,0 chrIV 555379 . C T 983 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=0;QD=14.04;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1016,111,0 chrIV 555381 . C G 921 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=0;QD=14.17;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:954,111,0 chrIV 555425 . A C 1622 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=18.02;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1655,183,0 chrIV 555524 . C A 1059 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.06;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1092,120,0 chrIV 555588 . C T 1023 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=20.46;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1056,120,0 chrIV 556545 . A G 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.538;DP=132;Dels=0.00;FS=15.567;HaplotypeScore=11.7185;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.871;QD=21.14;ReadPosRankSum=3.694;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:5,126:132:99:2823,321,0 chrIV 556732 . T C 2877 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.47;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2910,330,0 chrIV 556915 . A G 2849 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=18.87;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2882,330,0 chrIV 556934 . A C 2753 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.25;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2786,321,0 chrIV 557054 . C T 4024.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.40;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4024,447,0 chrIV 557109 . G A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.90;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3616,393,0 chrIV 557113 . G A 3587.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7527;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=20.50;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,171:175:99:3587,399,0 chrIV 557161 . A G 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=159;Dels=0.00;FS=6.070;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-1.299;QD=17.04;ReadPosRankSum=2.879;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:3,155:159:99:2743,315,0 chrIV 557899 . T C 4335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=213;Dels=0.00;FS=6.998;HaplotypeScore=6.9076;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=1.731;QD=20.35;ReadPosRankSum=2.426;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:2,210:213:99:4335,492,0 chrIV 557923 . A G 4429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.2723;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.036;QD=20.60;ReadPosRankSum=1.700;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4429,498,0 chrIV 558895 . A G 2987 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=20.89;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3020,345,0 chrIV 558963 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=0.412;QD=23.47;ReadPosRankSum=1.709;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3450,396,0 chrIV 559020 . G A 3350.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,140:144:99:3350,369,0 chrIV 559132 . T A 3752.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.45;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3752,408,0 chrIV 559236 . C T 3923.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.4209;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.67;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3923,420,0 chrIV 559582 . G T 4142.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4142,462,0 chrIV 559897 . T C 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=3.930;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.124;QD=21.21;ReadPosRankSum=1.626;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2811,321,0 chrIV 559935 . C T 2846 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2879,324,0 chrIV 560449 . A G 3568.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.4580;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.24;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3568,405,0 chrIV 560536 . T A 4921.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4921,558,0 chrIV 560715 . G A 2390 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.34;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2423,273,0 chrIV 561251 . A G 2387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=104;Dels=0.01;FS=5.172;HaplotypeScore=20.1703;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.528;QD=22.95;ReadPosRankSum=1.664;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2420,270,0 chrIV 562925 . A G 1732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=89;Dels=0.00;FS=2.936;HaplotypeScore=8.3331;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.872;QD=19.46;ReadPosRankSum=2.394;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1765,201,0 chrIV 562970 . G T 1746 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=43.62;MQ0=0;QD=19.62;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1779,192,0 chrIV 562989 . G C 1433 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.99;MQ0=0;QD=16.66;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1466,168,0 chrIV 563010 . C T 895 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.374;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=13.6447;MLEAC=2;MLEAF=1.00;MQ=29.27;MQ0=1;MQRankSum=-2.217;QD=10.78;ReadPosRankSum=3.980;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:7,76:83:99:928,102,0 chrIV 563014 . T C 810 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.043;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=11.1782;MLEAC=2;MLEAF=1.00;MQ=29.65;MQ0=1;MQRankSum=0.014;QD=9.42;ReadPosRankSum=2.363;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:96:843,96,0 chrIV 563017 . A T 999 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=11.1782;MLEAC=2;MLEAF=1.00;MQ=30.62;MQ0=1;QD=10.98;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1032,120,0 chrIV 563021 . G A 1007 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=11.1782;MLEAC=2;MLEAF=1.00;MQ=31.42;MQ0=1;QD=11.44;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1040,114,0 chrIV 563080 . C A 1760 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=1;QD=18.72;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1793,201,0 chrIV 563209 . G C 2066 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.3227;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=21.98;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2099,237,0 chrIV 563218 . G T 2142 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=23.28;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2175,234,0 chrIV 563468 . G A 3346.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.73;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3346,372,0 chrIV 563790 . C T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=16.8644;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.79;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3791,414,0 chrIV 564360 . T C 4361.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.57;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4361,507,0 chrIV 564366 . C T 4138.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=19.89;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4138,462,0 chrIV 564745 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.80;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3150,357,0 chrIV 564873 . A G 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=-1.563;QD=15.24;ReadPosRankSum=1.711;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,163:164:99:2532,326,0 chrIV 564879 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=19.75;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3212,351,0 chrIV 565245 . G A 4372.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.92;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4372,498,0 chrIV 565254 . T C 4155.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.88;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4155,486,0 chrIV 565313 . C T 4056.01 SnpCluster AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=19.50;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4056,456,0 chrIV 565317 . T G 3887.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;MQRankSum=-0.944;QD=18.16;ReadPosRankSum=1.617;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:3887,444,0 chrIV 565322 . A G 3880.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=212;Dels=0.00;FS=4.647;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=0.326;QD=18.30;ReadPosRankSum=1.648;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,206:212:99:3880,441,0 chrIV 565468 . A G 5259.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.280;QD=22.47;ReadPosRankSum=2.206;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:2,230:234:99:5259,594,0 chrIV 565653 . G T 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.773;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=17.5439;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-1.439;QD=18.75;ReadPosRankSum=3.069;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:5,153:158:99:2995,333,0 chrIV 565654 . A G 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.743;DP=158;Dels=0.01;FS=7.838;HaplotypeScore=17.5439;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-0.946;QD=18.04;ReadPosRankSum=3.783;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:5,151:156:99:2884,333,0 chrIV 565705 . T C 2505 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.53;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2538,285,0 chrIV 565899 . G A 3557.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.20;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3557,396,0 chrIV 566007 . A G 4219.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.6398;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.44;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4219,474,0 chrIV 566055 . C T 4308.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.0283;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.67;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4308,477,0 chrIV 566074 . T C 4553.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.6965;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.65;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4553,513,0 chrIV 566376 . A G 3178 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.70;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3211,372,0 chrIV 566726 . G A 2595 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.27;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2628,282,0 chrIV 566736 . T C 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-0.138;QD=19.97;ReadPosRankSum=1.701;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2290,261,0 chrIV 567129 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.60;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3420,372,0 chrIV 567321 . C T 4504.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.5191;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.34;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4504,498,0 chrIV 567364 . A G 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=3.408;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.130;QD=23.26;ReadPosRankSum=1.710;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3745,420,0 chrIV 567474 . T G 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=147;Dels=0.00;FS=11.109;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.069;QD=19.50;ReadPosRankSum=2.332;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2900,342,0 chrIV 567805 . C T 2673 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2706,294,0 chrIV 567972 . A C 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.493;QD=23.51;ReadPosRankSum=1.708;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3432,399,0 chrIV 568017 . C T 3677.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.19;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3677,405,0 chrIV 568062 . A G 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=3.041;HaplotypeScore=11.0737;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.327;QD=22.13;ReadPosRankSum=1.708;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3197,363,0 chrIV 568131 . A G 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=139;Dels=0.00;FS=6.183;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.293;QD=21.69;ReadPosRankSum=2.413;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:2,134:139:99:3048,354,0 chrIV 568528 . T C 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.261;DP=142;Dels=0.00;FS=19.591;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.031;QD=18.87;ReadPosRankSum=3.311;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:4,138:142:99:2712,321,0 chrIV 568816 . G A 2686 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=24.20;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2719,294,0 chrIV 568863 . G A 1895 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=20.16;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1928,216,0 chrIV 568871 . G A 2037 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=20.17;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2070,231,0 chrIV 569056 . A G 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=0.309;QD=19.85;ReadPosRankSum=1.670;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2296,261,0 chrIV 569057 . G A 2425 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=21.46;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2458,267,0 chrIV 569606 . T G 2961 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.42;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2994,336,0 chrIV 569915 . T C 2240 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2273,258,0 chrIV 570168 . T C 3009 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.8523;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.69;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3042,339,0 chrIV 570290 . A T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.28;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3771,408,0 chrIV 570369 . A G 3155 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4107;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.03;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3188,357,0 chrIV 570926 . A G 4747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.370;DP=214;Dels=0.00;FS=5.241;HaplotypeScore=12.6996;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.913;QD=22.18;ReadPosRankSum=3.395;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:4,209:214:99:4747,540,0 chrIV 571144 . C A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.7141;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.37;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:4067,447,0 chrIV 571473 . C T 3375.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3375,369,0 chrIV 571718 . A G 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=106;Dels=0.00;FS=3.027;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.128;QD=21.42;ReadPosRankSum=2.334;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2303,261,0 chrIV 571806 . A G 2682 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.32;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2715,315,0 chrIV 572610 . C T 3030 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.31;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3063,339,0 chrIV 572677 . A G 2421 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.42;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2454,288,0 chrIV 572800 . G A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.1269;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.08;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3323,354,0 chrIV 572826 . C T 2951 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.08;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2984,333,0 chrIV 573174 . A G 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=172;Dels=0.00;FS=2.570;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-0.559;QD=17.08;ReadPosRankSum=2.935;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:2971,339,0 chrIV 573177 . T C 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=165;Dels=0.00;FS=8.493;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=0.547;QD=17.15;ReadPosRankSum=2.360;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:2863,339,0 chrIV 573577 . A G 4100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.732;QD=21.93;ReadPosRankSum=1.695;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4100,468,0 chrIV 573702 . A G 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.733;DP=162;Dels=0.00;FS=5.819;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.410;QD=21.77;ReadPosRankSum=2.882;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:3527,405,0 chrIV 573826 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.02;FS=0.000;HaplotypeScore=27.7111;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.98;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2869,315,0 chrIV 573928 . A G 2713 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.4608;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.88;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2746,312,0 chrIV 573980 . G A 2377 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.4282;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.67;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2410,261,0 chrIV 573991 . C T 2231 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.85;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2264,246,0 chrIV 574093 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.53;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3116,348,0 chrIV 574445 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3192,357,0 chrIV 574619 . C T 4663.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4663,525,0 chrIV 574753 . T C 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=155;Dels=0.00;FS=7.454;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.769;QD=18.20;ReadPosRankSum=2.386;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:2854,327,0 chrIV 574804 . G C 3998.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.15;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:3998,456,0 chrIV 574968 . G C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.5371;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.36;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3332,381,0 chrIV 575000 . G A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.5586;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3698,405,0 chrIV 575468 . A C 2588 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.61;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2621,303,0 chrIV 575774 . G A 3688.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.4254;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.64;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3688,417,0 chrIV 575873 . A G 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=3.465;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.347;QD=23.72;ReadPosRankSum=1.712;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4056,462,0 chrIV 575960 . T G 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.496;QD=21.50;ReadPosRankSum=1.688;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3397,396,0 chrIV 576025 . C A 1532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=0.871;QD=12.46;ReadPosRankSum=0.461;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:2,119:123:99:1565,174,0 chrIV 576049 . A C 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.145;DP=137;Dels=0.00;FS=2.629;HaplotypeScore=9.5488;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-1.265;QD=14.98;ReadPosRankSum=2.360;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2085,240,0 chrIV 576149 . T C 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=135;Dels=0.00;FS=8.041;HaplotypeScore=16.4273;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.157;QD=21.29;ReadPosRankSum=2.394;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:2,131:135:99:2907,330,0 chrIV 576258 . C T 1781 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.20;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1814,204,0 chrIV 576308 . A G 2176 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.54;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2209,252,0 chrIV 576524 . G T 2780 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.60;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2813,303,0 chrIV 576577 . G A 2628 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.9089;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.46;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2661,291,0 chrIV 577520 . A C 4021.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.37;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4021,456,0 chrIV 578168 . T C 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=4.317;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.968;QD=21.13;ReadPosRankSum=1.705;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2717,312,0 chrIV 578566 . T A 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=0.873;QD=23.81;ReadPosRankSum=1.703;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2819,306,0 chrIV 578638 . T C 2359 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=118.8858;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=17.09;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2392,273,0 chrIV 578649 . T C 2090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=2.967;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;MQRankSum=-0.668;QD=16.46;ReadPosRankSum=2.411;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2123,237,0 chrIV 578728 . A G 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;DP=138;Dels=0.00;FS=16.274;HaplotypeScore=7.4293;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.742;QD=21.38;ReadPosRankSum=3.395;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:4,134:138:99:2984,354,0 chrIV 578841 . G A 3687.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.35;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3687,402,0 chrIV 578941 . A G 3399.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.24;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3399,393,0 chrIV 579199 . C A 2120 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=24.94;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2153,231,0 chrIV 579222 . A T 1430 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.67;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1463,162,0 chrIV 579241 . T A 13.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;DP=70;Dels=0.00;FS=9.037;HaplotypeScore=57.0240;MLEAC=1;MLEAF=0.500;MQ=52.80;MQ0=0;MQRankSum=-1.861;QD=0.19;ReadPosRankSum=-0.755;SB=-1.706e+01 GT:AD:DP:GQ:PL 0/1:68,2:70:16:43,0,16 chrIV 579249 . T A 86.52 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.524;DP=66;Dels=0.00;FS=2.581;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=50.41;MQ0=0;MQRankSum=0.893;QD=1.31;ReadPosRankSum=2.617;SB=-5.645e+02 GT:AD:DP:GQ:PL 0/1:3,63:66:6:116,0,6 chrIV 579531 . G A 2430 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.71;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2463,267,0 chrIV 579755 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=4.349;HaplotypeScore=2.9951;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-1.449;QD=22.36;ReadPosRankSum=1.709;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3287,378,0 chrIV 579762 . A C 3226.07 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=22.56;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3259,363,0 chrIV 579813 . A G 2771 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.23;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2804,318,0 chrIV 579869 . C T 3655.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.56;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3655,411,0 chrIV 579879 . A G 3534.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.55;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3534,405,0 chrIV 579940 . G A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.35;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3437,375,0 chrIV 580006 . T C 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=185;Dels=0.00;FS=5.847;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=-0.472;QD=20.04;ReadPosRankSum=2.928;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:3,178:185:99:3708,420,0 chrIV 580011 . T C 3669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.039;DP=192;Dels=0.00;FS=8.345;HaplotypeScore=8.8807;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.736;QD=19.11;ReadPosRankSum=3.405;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:4,187:192:99:3669,414,0 chrIV 580119 . G C 3602.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.7841;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.44;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3602,408,0 chrIV 580191 . T C 4355.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.45;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4355,495,0 chrIV 580230 . T C 4635.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.8231;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.86;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4635,540,0 chrIV 580374 . C T 2927 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.17;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2960,339,0 chrIV 580561 . C T 3037 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.91;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3070,333,0 chrIV 580820 . T A 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.185;DP=147;Dels=0.00;FS=9.151;HaplotypeScore=13.8765;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.661;QD=21.91;ReadPosRankSum=3.328;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:4,143:147:99:3254,351,0 chrIV 580899 . T C 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.382;QD=21.96;ReadPosRankSum=1.711;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3690,423,0 chrIV 580972 . A G 4208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=187;Dels=0.01;FS=8.639;HaplotypeScore=19.4618;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.691;QD=22.50;ReadPosRankSum=2.423;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:3,181:186:99:4208,474,0 chrIV 581004 . A C 4707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=201;Dels=0.00;FS=8.256;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=2.034;QD=23.42;ReadPosRankSum=2.425;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4707,537,0 chrIV 581033 . A G 4127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=3.807;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.272;QD=22.31;ReadPosRankSum=1.713;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4127,459,0 chrIV 581058 . A G 3836.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.1106;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.85;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3836,432,0 chrIV 581091 . C T 4173.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.1987;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.58;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4173,444,0 chrIV 581181 . T C 4487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=213;Dels=0.00;FS=8.177;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.859;QD=21.07;ReadPosRankSum=2.426;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:2,210:213:99:4487,516,0 chrIV 581218 . G A 4504.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.1534;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.86;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4504,507,0 chrIV 581388 . A G 3120 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.3105;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.61;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3153,363,0 chrIV 581521 . G A 2486 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2519,273,0 chrIV 581857 . A G 3364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=3.764;HaplotypeScore=14.2469;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.408;QD=21.29;ReadPosRankSum=1.710;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3364,393,0 chrIV 581897 . A C 3984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=185;Dels=0.00;FS=3.979;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-1.489;QD=21.54;ReadPosRankSum=1.676;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3984,456,0 chrIV 582052 . T C 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.358;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-1.466;QD=23.18;ReadPosRankSum=1.710;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3639,408,0 chrIV 582090 . C T 3740.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=22.13;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:3740,420,0 chrIV 582112 . A G 3760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.304;DP=192;Dels=0.00;FS=5.141;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=0.416;QD=19.58;ReadPosRankSum=3.378;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:4,187:192:99:3760,423,0 chrIV 582132 . G T 4097.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.80;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4097,441,0 chrIV 582200 . T C 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=175;Dels=0.00;FS=3.597;HaplotypeScore=13.3064;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.418;QD=20.88;ReadPosRankSum=1.712;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3654,414,0 chrIV 582466 . T G 3295.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2263;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.82;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3295,384,0 chrIV 582605 . T C 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=118;Dels=0.00;FS=3.569;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.48;MQ0=0;MQRankSum=-1.702;QD=20.56;ReadPosRankSum=1.702;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2459,276,0 chrIV 583013 . A G 3660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=165;Dels=0.00;FS=9.130;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.794;QD=22.18;ReadPosRankSum=2.360;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3660,417,0 chrIV 583094 . T C 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=159;Dels=0.00;FS=2.874;HaplotypeScore=9.0830;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.352;QD=22.16;ReadPosRankSum=2.419;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3524,411,0 chrIV 583433 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3265,378,0 chrIV 583765 . G A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.97;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4065,438,0 chrIV 583767 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.317;DP=183;Dels=0.00;FS=9.042;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-1.875;QD=20.33;ReadPosRankSum=3.412;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:4,179:183:99:3721,432,0 chrIV 583925 . G A 4338.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.59;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4338,474,0 chrIV 583943 . A G 3844.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=21.97;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3844,429,0 chrIV 583982 . A C 3296.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.83;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3296,375,0 chrIV 584012 . T C 3044 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.59;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3077,351,0 chrIV 584134 . A G 3288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-1.593;QD=21.92;ReadPosRankSum=1.662;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3288,375,0 chrIV 584255 . C T 2664 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.6789;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.39;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2697,297,0 chrIV 584423 . A C 4470.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=24.29;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4470,501,0 chrIV 584447 . G A 4690.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=23.93;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4690,525,0 chrIV 584489 . A T 3875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=165;Dels=0.00;FS=5.336;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-0.528;QD=23.48;ReadPosRankSum=1.711;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3875,426,0 chrIV 584534 . G A 3087 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.70;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3120,339,0 chrIV 584819 . A G 2429 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=22.08;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2462,279,0 chrIV 585317 . T C 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.586;QD=20.81;ReadPosRankSum=1.681;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2863,327,0 chrIV 585358 . C T 3098 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.13;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3131,348,0 chrIV 585389 . T C 3005 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.7844;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.10;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3038,351,0 chrIV 585467 . A G 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=4.740;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.190;QD=19.38;ReadPosRankSum=1.656;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2708,309,0 chrIV 585476 . C G 2860 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.28;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2893,333,0 chrIV 585554 . A G 3887.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.00;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3887,432,0 chrIV 585872 . T C 4605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=211;Dels=0.00;FS=5.536;HaplotypeScore=19.0765;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.101;QD=21.82;ReadPosRankSum=2.948;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:3,207:211:99:4605,528,0 chrIV 586361 . T C 4137.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.3261;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4137,474,0 chrIV 586477 . G A 3135 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.9647;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.39;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3168,345,0 chrIV 586700 . A G 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.732;QD=22.61;ReadPosRankSum=1.660;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,143:148:99:3346,390,0 chrIV 586725 . A G 3502.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.04;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3502,393,0 chrIV 586742 . C G 3341.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.13;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3341,375,0 chrIV 586820 . T C 2575 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.59;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2608,297,0 chrIV 586838 . C T 2512 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.63;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2545,285,0 chrIV 587113 . C T 2625 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.53;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2658,297,0 chrIV 587237 . G A 2603 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=13.2977;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.14;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2636,300,0 chrIV 587347 . C T 2490 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2523,288,0 chrIV 587764 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.76;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3254,369,0 chrIV 588140 . G A 3483.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.0400;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.77;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3483,387,0 chrIV 588182 . A G 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=162;Dels=0.00;FS=7.024;HaplotypeScore=12.9362;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-1.335;QD=20.76;ReadPosRankSum=2.358;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3363,384,0 chrIV 588263 . T C 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.539;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=1.326;QD=21.66;ReadPosRankSum=1.693;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3878,447,0 chrIV 588381 . A T 3108 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=20.31;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3141,339,0 chrIV 588386 . A G 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=-0.332;QD=18.71;ReadPosRankSum=1.708;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2765,321,0 chrIV 588450 . A G 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.4260;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.776;QD=19.56;ReadPosRankSum=1.690;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3221,369,0 chrIV 588509 . A G 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.030;QD=22.32;ReadPosRankSum=1.712;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3839,432,0 chrIV 588583 . G A 2618 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.00;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2651,303,0 chrIV 588705 . G T 2928 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.61;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2961,324,0 chrIV 589025 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3261,354,0 chrIV 589061 . G A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3336,354,0 chrIV 589440 . T C 2275 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=22.09;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2308,261,0 chrIV 589449 . G A 2193 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=22.15;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2226,246,0 chrIV 589460 . T C 1786 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=20.77;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1819,204,0 chrIV 589510 . A T 1466 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.10;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1499,162,0 chrIV 589522 . G A 1371 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=17.81;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1404,156,0 chrIV 589613 . C T 1300 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=17.57;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1333,153,0 chrIV 589702 . C G 845 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=16.90;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:878,102,0 chrIV 589875 . C T 2029 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=22.54;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2062,222,0 chrIV 590018 . T C 2409 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=20.42;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2442,285,0 chrIV 590019 . A G 2400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=6.135;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=0.203;QD=20.87;ReadPosRankSum=2.407;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2433,285,0 chrIV 590058 . A G 2386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=3.909;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.380;QD=19.24;ReadPosRankSum=1.704;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2419,273,0 chrIV 590081 . T C 2888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.099;QD=20.63;ReadPosRankSum=1.683;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2921,330,0 chrIV 590175 . A G 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=198;Dels=0.00;FS=4.114;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.591;QD=20.24;ReadPosRankSum=1.644;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4008,474,0 chrIV 590261 . T C 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.5836;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=-0.933;QD=21.88;ReadPosRankSum=1.713;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3983,456,0 chrIV 590306 . C T 3897.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.30;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3897,423,0 chrIV 590328 . A G 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=203;Dels=0.00;FS=5.818;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=0.785;QD=20.08;ReadPosRankSum=2.885;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:3,198:203:99:4076,474,0 chrIV 590403 . G A 4502.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.3831;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.29;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4502,507,0 chrIV 590540 . T C 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=140;Dels=0.00;FS=7.339;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=0.398;QD=21.76;ReadPosRankSum=2.361;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:3080,348,0 chrIV 590603 . G T 3436.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.03;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3436,384,0 chrIV 590870 . A G 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.574;QD=22.70;ReadPosRankSum=0.903;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3030,342,0 chrIV 590898 . T C 3648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=166;Dels=0.00;FS=6.479;HaplotypeScore=11.1921;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.724;QD=21.98;ReadPosRankSum=2.420;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3648,411,0 chrIV 591021 . A G 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=185;Dels=0.00;FS=2.350;HaplotypeScore=19.2684;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.701;QD=22.89;ReadPosRankSum=2.506;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:4234,486,0 chrIV 591129 . A G 4053.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.16;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4053,471,0 chrIV 591187 . A G 4312.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.11;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4312,489,0 chrIV 591205 . C T 4513.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.7495;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.79;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4513,492,0 chrIV 591552 . A T 2388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.923;QD=22.11;ReadPosRankSum=1.700;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2421,264,0 chrIV 591737 . T C 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=121;Dels=0.00;FS=2.567;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.71;MQ0=0;MQRankSum=0.792;QD=21.36;ReadPosRankSum=2.942;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2617,303,0 chrIV 591921 . A G 3789.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.48;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3789,444,0 chrIV 592009 . G A 4271.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.6923;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=23.86;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4271,456,0 chrIV 592050 . T C 3343.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=21.71;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3343,381,0 chrIV 592072 . T C 3294.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9022;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.81;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3294,384,0 chrIV 592124 . G A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=6.3753;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=23.21;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3389,366,0 chrIV 592160 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=18.87;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2618,288,0 chrIV 592179 . A G 1921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.389;DP=128;Dels=0.00;FS=8.729;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;MQRankSum=-2.184;QD=15.01;ReadPosRankSum=3.389;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:4,124:128:99:1954,222,0 chrIV 592224 . A G 1188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=114;Dels=0.03;FS=0.000;HaplotypeScore=12.0746;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=0;MQRankSum=-1.411;QD=10.42;ReadPosRankSum=1.668;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,107:111:99:1221,141,0 chrIV 592313 . G T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.4035;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.17;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3599,390,0 chrIV 592634 . G A 4441.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.9169;MLEAC=2;MLEAF=1.00;MQ=61.54;MQ0=0;QD=21.77;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4441,483,0 chrIV 593018 . T C 2746 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.90;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2779,321,0 chrIV 593135 . T C 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.143;QD=23.03;ReadPosRankSum=1.706;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3096,360,0 chrIV 593192 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=163;Dels=0.00;FS=5.449;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=0.756;QD=20.25;ReadPosRankSum=1.456;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:3,158:163:99:3300,381,0 chrIV 593211 . A C 3979.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.10;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:3979,444,0 chrIV 593254 . T A 4203.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=202.5541;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=18.27;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4203,471,0 chrIV 593313 . G A 4052.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.20;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4052,432,0 chrIV 593316 . A G 3776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=216;Dels=0.00;FS=4.476;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.675;QD=17.48;ReadPosRankSum=1.716;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,212:216:99:3776,426,0 chrIV 593463 . A G 4763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.584;QD=18.39;ReadPosRankSum=1.692;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:1,257:259:99:4763,555,0 chrIV 593517 . T G 4303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.750;DP=227;Dels=0.00;FS=11.079;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.268;QD=18.96;ReadPosRankSum=2.968;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:3,218:227:99:4303,483,0 chrIV 593642 . T C 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=174;Dels=0.00;FS=7.410;HaplotypeScore=15.2708;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.504;QD=20.64;ReadPosRankSum=2.421;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3591,408,0 chrIV 593676 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.37;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3547,396,0 chrIV 593760 . C T 4402.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.1248;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.16;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4402,486,0 chrIV 593816 . T A 4972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.688;QD=23.68;ReadPosRankSum=1.715;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4972,552,0 chrIV 594035 . T A 4928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.143;DP=226;Dels=0.00;FS=14.772;HaplotypeScore=19.8839;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.422;QD=21.81;ReadPosRankSum=3.406;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:4,222:226:99:4928,549,0 chrIV 594150 . A G 4140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.373;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=16.5168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.057;QD=22.14;ReadPosRankSum=2.187;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4140,454,0 chrIV 594402 . A G 4540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=206;Dels=0.00;FS=3.680;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.435;QD=22.04;ReadPosRankSum=1.630;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:1,202:206:99:4540,519,0 chrIV 594517 . T C 4495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=201;Dels=0.00;FS=8.792;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.620;QD=22.36;ReadPosRankSum=2.425;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4495,510,0 chrIV 594612 . T C 4561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=215;Dels=0.00;FS=7.101;HaplotypeScore=14.1781;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.000;QD=21.21;ReadPosRankSum=2.414;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:2,208:215:99:4561,513,0 chrIV 594738 . A G 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=3.108;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.681;QD=21.42;ReadPosRankSum=1.706;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2925,333,0 chrIV 594777 . C G 3081 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.82;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3114,351,0 chrIV 594843 . A G 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.3300;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.391;QD=22.82;ReadPosRankSum=1.710;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3560,402,0 chrIV 594975 . C T 2912 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.57;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2945,324,0 chrIV 595029 . A G 2650 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.20;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2683,306,0 chrIV 595047 . C T 2847 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=21.25;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2880,327,0 chrIV 595104 . C T 2330 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.7766;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.10;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2363,252,0 chrIV 595122 . C T 2647 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.8235;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.75;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2680,294,0 chrIV 595269 . C G 2590 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=20.89;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2623,297,0 chrIV 595275 . G T 2578 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=21.31;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2611,285,0 chrIV 595314 . C T 2779 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=20.14;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2812,303,0 chrIV 595362 . G C 4028.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.5885;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.63;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4028,465,0 chrIV 595528 . A G 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=142;Dels=0.00;FS=6.060;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=0.336;QD=20.32;ReadPosRankSum=2.907;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:3,138:142:99:2919,327,0 chrIV 595537 . A G 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-1.415;QD=20.08;ReadPosRankSum=1.683;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2884,327,0 chrIV 595587 . T C 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=-0.291;QD=19.57;ReadPosRankSum=1.709;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:2988,342,0 chrIV 595611 . G A 2276 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=19.13;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2309,258,0 chrIV 595615 . C T 2124 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=18.96;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2157,237,0 chrIV 595713 . T C 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=127;Dels=0.00;FS=6.124;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-1.346;QD=22.05;ReadPosRankSum=2.353;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2833,333,0 chrIV 596055 . T C 4165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.714;QD=22.04;ReadPosRankSum=1.695;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4165,477,0 chrIV 596770 . C T 2438 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=22.37;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2471,267,0 chrIV 596811 . T C 2276 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=22.99;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2309,267,0 chrIV 596817 . T C 2244 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=23.37;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2277,261,0 chrIV 596910 . A G 67.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=0;MQRankSum=-1.028;QD=0.70;ReadPosRankSum=0.597;SB=-9.125e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:12:100,12,0 chrIV 596913 . G A 1383 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.57;MQ0=0;QD=13.83;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1416,156,0 chrIV 596934 . T A 1478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=117;Dels=0.00;FS=2.576;HaplotypeScore=107.0721;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;MQRankSum=-1.152;QD=12.63;ReadPosRankSum=2.938;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:3,114:117:99:1511,165,0 chrIV 597058 . C T 43.97 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=66.7110;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;QD=0.45;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:9:76,9,0 chrIV 597096 . C T 2129 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=128.2606;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;QD=15.65;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2162,237,0 chrIV 597114 . T C 2217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=142.3642;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;MQRankSum=-1.080;QD=14.21;ReadPosRankSum=1.665;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:2250,258,0 chrIV 597218 . C T 3154 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4460;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=23.36;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3187,360,0 chrIV 597245 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=22.73;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2852,306,0 chrIV 597383 . C T 2864 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.73;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2897,312,0 chrIV 597485 . C T 2616 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.09;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2649,297,0 chrIV 597488 . T C 2767 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.20;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2800,309,0 chrIV 597668 . T C 3760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-1.412;QD=21.73;ReadPosRankSum=1.692;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3760,441,0 chrIV 597800 . T C 3856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=178;Dels=0.00;FS=7.510;HaplotypeScore=8.8851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.032;QD=21.66;ReadPosRankSum=2.422;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:2,173:178:99:3856,438,0 chrIV 597833 . C T 4114.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=17.0640;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.36;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4114,462,0 chrIV 598134 . A T 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.747;QD=20.88;ReadPosRankSum=1.669;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2330,261,0 chrIV 598184 . T G 2114 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.35;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2147,255,0 chrIV 598232 . C T 1554 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.19;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1587,174,0 chrIV 598369 . A G 1641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.983;QD=21.59;ReadPosRankSum=1.639;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1674,189,0 chrIV 598426 . A C 1225 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.9446;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.87;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1258,150,0 chrIV 598569 . G A 1280 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.07;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1313,138,0 chrIV 598578 . G T 1223 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.84;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1256,141,0 chrIV 598655 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.30;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1588,168,0 chrIV 598656 . C T 1460 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.00;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1493,168,0 chrIV 598729 . C T 1805 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=19.62;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1838,198,0 chrIV 598956 . A G 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=4.010;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=0.749;QD=24.72;ReadPosRankSum=1.708;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3510,399,0 chrIV 599013 . G A 3095 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=22.76;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3128,348,0 chrIV 599029 . G C 2925 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.1795;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.31;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2958,336,0 chrIV 599181 . C T 4173.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.98;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4173,468,0 chrIV 599229 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=3.582;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.617;QD=22.95;ReadPosRankSum=1.661;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3350,375,0 chrIV 599314 . T C 4269.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=183;Dels=0.00;FS=9.848;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.193;QD=23.33;ReadPosRankSum=2.818;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:3,179:183:99:4269,480,0 chrIV 599388 . G A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=19.23;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3366,378,0 chrIV 599409 . T C 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.010;QD=20.61;ReadPosRankSum=1.711;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3463,396,0 chrIV 599440 . C A 3725.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.91;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3725,405,0 chrIV 599654 . G A 3547.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.1219;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.74;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3547,384,0 chrIV 599820 . G A 4053.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.15;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4053,471,0 chrIV 599940 . A G 4996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=207;Dels=0.00;FS=7.865;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.374;QD=24.14;ReadPosRankSum=2.414;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4996,558,0 chrIV 599964 . C G 4749.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.51;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4749,537,0 chrIV 600005 . A G 4709.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.70;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4709,534,0 chrIV 600037 . T C 5859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.338;DP=266;Dels=0.00;FS=6.043;HaplotypeScore=22.5026;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.593;QD=22.03;ReadPosRankSum=1.947;SB=-3.140e+03 GT:AD:DP:GQ:PL 1/1:3,261:266:99:5859,660,0 chrIV 600120 . T C 4825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=246;Dels=0.00;FS=7.516;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=0.186;QD=19.61;ReadPosRankSum=2.369;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:2,243:246:99:4825,549,0 chrIV 600127 . T A 4574.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=20.15;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4574,495,0 chrIV 600140 . G A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.0225;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=20.42;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4206,453,0 chrIV 600177 . C T 3917.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=21.7082;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=19.11;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3917,438,0 chrIV 600341 . T G 2865 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.10;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2898,327,0 chrIV 600479 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=107.2839;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=20.15;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2531,285,0 chrIV 600549 . G T 2516 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=12.6302;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=22.27;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2549,288,0 chrIV 600632 . A G 1954 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.24;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1987,222,0 chrIV 600705 . C T 2520 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=18.53;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2553,291,0 chrIV 600722 . T C 2872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=156;Dels=0.00;FS=2.762;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=-1.920;QD=18.41;ReadPosRankSum=2.369;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:2,151:156:99:2905,327,0 chrIV 600764 . G A 2735 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=133.3781;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=17.88;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2768,303,0 chrIV 600792 . G T 2802 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=19.87;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2835,312,0 chrIV 600978 . A T 4626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=6.3740;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=0.551;QD=21.22;ReadPosRankSum=-1.030;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4626,507,0 chrIV 601041 . A G 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.345;DP=104;Dels=0.00;FS=32.099;HaplotypeScore=20.4197;MLEAC=1;MLEAF=0.500;MQ=42.94;MQ0=0;MQRankSum=0.431;QD=0.35;ReadPosRankSum=0.296;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,27:104:66:66,0,936 chrIV 601053 . T C 153.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.899;DP=83;Dels=0.00;FS=12.604;HaplotypeScore=31.5422;MLEAC=1;MLEAF=0.500;MQ=51.98;MQ0=0;MQRankSum=1.258;QD=1.84;ReadPosRankSum=-1.958;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,17:83:99:183,0,739 chrIV 601057 . A C 156.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.631;DP=102;Dels=0.00;FS=7.473;HaplotypeScore=35.3602;MLEAC=1;MLEAF=0.500;MQ=51.98;MQ0=0;MQRankSum=0.556;QD=1.53;ReadPosRankSum=-4.477;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:66,34:102:99:186,0,942 chrIV 601059 . C T 180.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;DP=110;Dels=0.00;FS=6.704;HaplotypeScore=22.5732;MLEAC=1;MLEAF=0.500;MQ=52.36;MQ0=0;MQRankSum=-0.046;QD=1.64;ReadPosRankSum=-5.708;SB=-1.300e+02 GT:AD:DP:GQ:PL 0/1:66,44:110:99:210,0,894 chrIV 601074 . C T 2253.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.389;DP=305;Dels=0.00;FS=16.969;HaplotypeScore=70.9731;MLEAC=1;MLEAF=0.500;MQ=50.87;MQ0=0;MQRankSum=-0.320;QD=7.39;ReadPosRankSum=-5.862;SB=-1.875e+03 GT:AD:DP:GQ:PL 0/1:100,205:305:99:2283,0,1216 chrIV 601131 . T C 4744.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.862;DP=889;Dels=0.00;FS=11.164;HaplotypeScore=26.3487;MLEAC=1;MLEAF=0.500;MQ=53.88;MQ0=0;MQRankSum=7.327;QD=5.34;ReadPosRankSum=-0.975;SB=-2.695e+03 GT:AD:DP:GQ:PL 0/1:501,388:889:99:4744,0,6795 chrIV 601187 . G C 1484.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.390;DP=587;Dels=0.00;FS=33.825;HaplotypeScore=114.7743;MLEAC=1;MLEAF=0.500;MQ=56.82;MQ0=0;MQRankSum=-4.790;QD=2.53;ReadPosRankSum=-8.297;SB=-1.299e+03 GT:AD:DP:GQ:PL 0/1:386,194:587:99:1514,0,6749 chrIV 601210 . T A 9194.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.105;DP=428;Dels=0.00;FS=7.346;HaplotypeScore=40.4580;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-0.791;QD=21.48;ReadPosRankSum=4.105;SB=-3.284e+03 GT:AD:DP:GQ:PL 1/1:6,418:428:99:9194,1056,0 chrIV 601524 . C T 5056.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=15.725;DP=691;Dels=0.00;FS=33.873;HaplotypeScore=36.1873;MLEAC=1;MLEAF=0.500;MQ=55.32;MQ0=0;MQRankSum=-0.464;QD=7.32;ReadPosRankSum=6.076;SB=-2.828e+03 GT:AD:DP:GQ:PL 0/1:228,449:691:99:5056,0,1675 chrIV 601526 . T C 5308.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.474;DP=663;Dels=0.00;FS=24.904;HaplotypeScore=20.2992;MLEAC=1;MLEAF=0.500;MQ=55.23;MQ0=0;MQRankSum=3.136;QD=8.01;ReadPosRankSum=5.938;SB=-2.748e+03 GT:AD:DP:GQ:PL 0/1:210,449:663:99:5308,0,1808 chrIV 601542 . T A 594.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.192;DP=579;Dels=0.00;FS=0.815;HaplotypeScore=30.9364;MLEAC=1;MLEAF=0.500;MQ=55.02;MQ0=0;MQRankSum=1.695;QD=1.03;ReadPosRankSum=-9.669;SB=-4.970e+02 GT:AD:DP:GQ:PL 0/1:450,129:579:99:624,0,6096 chrIV 601644 . T C 5902.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=19.8877;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.49;SB=-3.240e+03 GT:AD:DP:GQ:PL 1/1:0,284:288:99:5902,687,0 chrIV 601683 . C T 5138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.106;DP=243;Dels=0.00;FS=3.554;HaplotypeScore=17.9576;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.771;QD=21.14;ReadPosRankSum=-0.408;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:1,241:243:99:5138,559,0 chrIV 602153 . T C 3377.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3377,387,0 chrIV 602248 . T C 2467 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.23;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2500,288,0 chrIV 602488 . C T 3734.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3734,405,0 chrIV 602876 . C T 2246 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2279,249,0 chrIV 602922 . C T 2249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.6160;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.728;QD=20.63;ReadPosRankSum=-0.923;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2282,249,0 chrIV 603005 . G A 2780 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.79;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2813,318,0 chrIV 603579 . T A 3110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.731;QD=22.87;ReadPosRankSum=1.681;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3143,351,0 chrIV 603685 . T C 4218.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.67;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4218,474,0 chrIV 603743 . A G 3514.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.10;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3514,408,0 chrIV 603839 . G A 3433.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3433,384,0 chrIV 603991 . C A 4804.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.6125;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=24.51;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,189:196:99:4804,522,0 chrIV 604105 . T C 5172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.265;DP=226;Dels=0.00;FS=5.034;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-1.052;QD=22.88;ReadPosRankSum=3.374;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:4,219:226:99:5172,588,0 chrIV 604397 . A G 3945.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.34;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:3945,462,0 chrIV 604439 . G A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.9491;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=19.56;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3991,438,0 chrIV 604670 . T C 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=154;Dels=0.00;FS=8.232;HaplotypeScore=4.6650;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.854;QD=18.81;ReadPosRankSum=2.354;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:2929,353,0 chrIV 604674 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.09;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3260,357,0 chrIV 604841 . T C 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.081;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.732;QD=21.10;ReadPosRankSum=1.648;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2650,300,0 chrIV 605187 . A G 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.492;QD=22.37;ReadPosRankSum=1.679;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2963,339,0 chrIV 605312 . C T 2575 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.28;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2608,282,0 chrIV 605501 . T C 2213 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.28;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2246,258,0 chrIV 605519 . G A 2279 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.56;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2312,249,0 chrIV 605558 . T C 2405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=109;Dels=0.00;FS=6.473;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=1.501;QD=22.06;ReadPosRankSum=2.405;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2438,279,0 chrIV 605615 . G C 2617 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.56;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2650,303,0 chrIV 605641 . C T 2691 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.20;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2724,297,0 chrIV 605796 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=24.19;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2694,291,0 chrIV 605972 . G A 2160 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.57;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2193,240,0 chrIV 605973 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=20.89;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2247,243,0 chrIV 606242 . T C 1603 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.66;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1636,183,0 chrIV 606300 . A T 1773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=84;Dels=0.00;FS=2.614;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.048;QD=21.11;ReadPosRankSum=2.917;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:3,81:84:99:1806,192,0 chrIV 606458 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1575,177,0 chrIV 606896 . T C 2361 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.66;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2394,279,0 chrIV 606952 . T G 2410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=109;Dels=0.00;FS=3.573;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.308;QD=22.11;ReadPosRankSum=1.635;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:2443,279,0 chrIV 607313 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.50;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2689,291,0 chrIV 607474 . C T 2845 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.76;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2878,321,0 chrIV 607973 . G A 2710 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.77;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2743,297,0 chrIV 608132 . A G 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=2.931;HaplotypeScore=5.1347;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=-1.124;QD=22.37;ReadPosRankSum=2.385;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3400,396,0 chrIV 608147 . A G 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=151;Dels=0.00;FS=6.010;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;MQRankSum=-0.847;QD=22.02;ReadPosRankSum=2.914;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3325,381,0 chrIV 608224 . T C 2804 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.25;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2837,324,0 chrIV 608333 . T C 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=129;Dels=0.00;FS=7.137;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;MQRankSum=1.821;QD=18.79;ReadPosRankSum=2.297;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2457,279,0 chrIV 608348 . T A 2164 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.52;MQ0=0;QD=19.15;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2197,249,0 chrIV 608350 . T C 2131 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=18.37;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2164,249,0 chrIV 608354 . G A 2031 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.81;MQ0=0;QD=17.97;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2064,237,0 chrIV 608390 . T C 1969 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=16.97;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2002,228,0 chrIV 608456 . T G 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=169;Dels=0.00;FS=2.985;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.866;QD=21.79;ReadPosRankSum=2.390;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:2,164:169:99:3683,435,0 chrIV 608522 . T A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.86;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3361,375,0 chrIV 608546 . A G 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=125;Dels=0.00;FS=10.727;HaplotypeScore=5.1715;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=0.423;QD=20.42;ReadPosRankSum=2.911;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2586,294,0 chrIV 608616 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=24.31;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3331,366,0 chrIV 608768 . A G 3164 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.28;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3197,366,0 chrIV 608921 . G A 2697 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,117:121:99:2730,306,0 chrIV 609172 . A G 2568 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2601,294,0 chrIV 609209 . A T 3119 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.6184;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3152,357,0 chrIV 609437 . T C 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=183;Dels=0.00;FS=4.316;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.617;QD=20.74;ReadPosRankSum=1.694;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:3795,429,0 chrIV 609602 . A T 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=138;Dels=0.00;FS=3.014;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.319;QD=21.46;ReadPosRankSum=2.322;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2995,330,0 chrIV 609926 . T C 4027.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.5908;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.50;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:4027,456,0 chrIV 609953 . T G 4255.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.8308;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.39;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4255,486,0 chrIV 610344 . G T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=17.7328;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.89;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3853,435,0 chrIV 610570 . C T 4066.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.49;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4066,450,0 chrIV 610717 . A G 4451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=202;Dels=0.00;FS=7.862;HaplotypeScore=25.3543;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.222;QD=22.03;ReadPosRankSum=2.170;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4451,525,0 chrIV 610801 . A G 4496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-1.263;QD=23.30;ReadPosRankSum=1.714;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4496,513,0 chrIV 610866 . C A 4082.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.6178;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=22.43;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4082,459,0 chrIV 610896 . G A 3992.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.7919;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.35;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3992,435,0 chrIV 611056 . A G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=22.33;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3349,384,0 chrIV 611082 . G C 2650 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=19.06;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2683,321,0 chrIV 611092 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=20.68;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2887,324,0 chrIV 611095 . A T 2767 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=19.76;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2800,312,0 chrIV 611172 . T A 3831.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.16;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3831,417,0 chrIV 611178 . A G 3586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=194;Dels=0.00;FS=3.613;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.853;QD=18.48;ReadPosRankSum=1.696;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:3586,411,0 chrIV 611253 . G T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=20.05;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3261,363,0 chrIV 611282 . T C 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=153;Dels=0.00;FS=2.901;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=0.855;QD=19.09;ReadPosRankSum=2.108;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:2954,339,0 chrIV 611287 . T C 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.278;DP=155;Dels=0.00;FS=8.229;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-1.710;QD=19.04;ReadPosRankSum=3.312;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:4,151:155:99:2984,342,0 chrIV 611508 . A G 3427.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.42;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3427,390,0 chrIV 611584 . A T 3621.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.9267;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.95;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3621,405,0 chrIV 611602 . T C 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.391;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-1.017;QD=20.77;ReadPosRankSum=1.665;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3252,372,0 chrIV 611678 . C T 4233.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=23.92;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4233,471,0 chrIV 611706 . A G 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=184;Dels=0.00;FS=8.187;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=0.060;QD=22.04;ReadPosRankSum=2.369;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4056,474,0 chrIV 611859 . G A 2887 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.2022;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=21.23;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2920,318,0 chrIV 611871 . G A 2946 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=21.04;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2979,327,0 chrIV 611969 . G C 2490 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=19.45;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2523,297,0 chrIV 612020 . A G 1787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.663;QD=22.06;ReadPosRankSum=1.561;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1820,213,0 chrIV 612078 . C T 2215 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=24.34;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2248,246,0 chrIV 612171 . T G 2028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.326;QD=20.08;ReadPosRankSum=1.664;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2061,237,0 chrIV 612253 . C G 2896 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.2580;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.93;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2929,333,0 chrIV 612294 . C T 2170 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.1375;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.87;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2203,243,0 chrIV 612323 . G A 2238 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.8766;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=20.35;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2271,246,0 chrIV 612573 . G A 4175.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.85;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4175,459,0 chrIV 612828 . G T 3173 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3206,354,0 chrIV 613325 . T C 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.169;QD=21.62;ReadPosRankSum=1.704;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2735,315,0 chrIV 613362 . T C 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.5823;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.050;QD=22.83;ReadPosRankSum=1.657;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3184,363,0 chrIV 613386 . T G 2846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=1.326;QD=22.41;ReadPosRankSum=2.411;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2879,330,0 chrIV 613520 . T C 3944.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.5268;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.41;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3944,453,0 chrIV 613630 . C T 3018 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.86;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3051,342,0 chrIV 613738 . G A 2511 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4676;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=19.02;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2544,279,0 chrIV 613744 . A G 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=133;Dels=0.00;FS=2.693;HaplotypeScore=5.0667;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;MQRankSum=-0.736;QD=19.24;ReadPosRankSum=2.189;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2592,297,0 chrIV 613810 . T C 2319 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=19.65;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2352,276,0 chrIV 613813 . A G 2445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=0.364;QD=20.55;ReadPosRankSum=0.830;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2478,282,0 chrIV 613864 . G A 1922 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.45;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1955,219,0 chrIV 613945 . T A 3668.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=24.29;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3668,399,0 chrIV 613999 . G A 2947 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=21.83;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2980,318,0 chrIV 614005 . G C 2606 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=20.36;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2639,300,0 chrIV 614045 . G T 2498 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=19.22;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2531,276,0 chrIV 614064 . T C 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=120;Dels=0.00;FS=3.002;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;MQRankSum=-0.615;QD=16.72;ReadPosRankSum=2.408;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:2,116:120:99:2040,231,0 chrIV 614065 . T C 1939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=121;Dels=0.00;FS=3.010;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=-1.291;QD=16.02;ReadPosRankSum=2.389;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:1972,225,0 chrIV 614093 . T C 2773 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.09;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2806,318,0 chrIV 614186 . G A 3402.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.95;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3402,366,0 chrIV 614205 . G T 2586 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=18.88;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,131:137:99:2619,297,0 chrIV 614223 . G T 2413 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=17.87;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2446,279,0 chrIV 614280 . T C 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=0.517;QD=21.51;ReadPosRankSum=1.687;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3312,384,0 chrIV 614321 . C T 3879.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=24.24;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3879,420,0 chrIV 614474 . T A 3614.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=22.45;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3614,393,0 chrIV 614483 . G A 3545.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.5918;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.98;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3545,402,0 chrIV 614534 . T C 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=162;Dels=0.00;FS=2.067;HaplotypeScore=16.2497;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=1.832;QD=19.28;ReadPosRankSum=3.083;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:4,154:162:99:3157,363,0 chrIV 614618 . C T 4217.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.77;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4217,471,0 chrIV 614729 . A G 3862.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.20;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3862,453,0 chrIV 614789 . T C 3524.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.7018;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.14;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3524,405,0 chrIV 614940 . A G 3698.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.9282;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.10;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3698,429,0 chrIV 615060 . T C 3875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=187;Dels=0.00;FS=4.725;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=-0.750;QD=20.72;ReadPosRankSum=1.639;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3875,444,0 chrIV 615092 . A G 3451.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=18.76;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3451,387,0 chrIV 615095 . C T 3316.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=18.32;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3316,375,0 chrIV 615114 . C T 3147 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=18.09;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3180,345,0 chrIV 615161 . T A 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=3.653;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.281;QD=20.86;ReadPosRankSum=1.689;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3337,372,0 chrIV 615243 . A G 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2893;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-1.671;QD=19.77;ReadPosRankSum=1.671;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2267,264,0 chrIV 615258 . T C 2488 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=21.26;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2521,285,0 chrIV 615317 . C T 2840 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.52;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2873,327,0 chrIV 615413 . A G 3056 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.14;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3089,363,0 chrIV 615437 . C T 2701 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=22.51;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2734,312,0 chrIV 615449 . A T 2565 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=23.53;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2598,285,0 chrIV 615581 . C T 3338.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.54;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3338,360,0 chrIV 615641 . G A 3370.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.96;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3370,360,0 chrIV 615694 . G T 2931 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=24.02;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2964,324,0 chrIV 615735 . C G 2378 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=20.50;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2411,276,0 chrIV 615758 . T C 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-0.742;QD=19.73;ReadPosRankSum=1.639;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2262,258,0 chrIV 615816 . C T 3298.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.56;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3298,354,0 chrIV 615950 . C T 2772 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=20.09;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2805,318,0 chrIV 615959 . A G 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.530;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;MQRankSum=-1.420;QD=19.26;ReadPosRankSum=1.628;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2594,300,0 chrIV 615973 . C T 2299 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=17.96;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2332,267,0 chrIV 615975 . C T 2440 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=18.63;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2473,273,0 chrIV 616214 . C T 2278 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=100.8009;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=18.22;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2311,249,0 chrIV 616434 . C T 4476.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.81;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4476,501,0 chrIV 616559 . G A 3823.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.2877;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.23;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3823,426,0 chrIV 616624 . G T 4469.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.35;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4469,495,0 chrIV 616689 . T C 4553.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.68;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4553,522,0 chrIV 616796 . G A 2587 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2620,285,0 chrIV 616883 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.7130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2950,333,0 chrIV 617177 . T C 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=144;Dels=0.00;FS=3.297;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.258;QD=22.28;ReadPosRankSum=1.708;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,140:144:99:3242,360,0 chrIV 617367 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=19.02;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3172,345,0 chrIV 617371 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=18.06;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3103,348,0 chrIV 617421 . A C 3093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.431;QD=17.88;ReadPosRankSum=1.552;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3126,363,0 chrIV 617915 . C T 4036.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4036,435,0 chrIV 618038 . G A 3443.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.8634;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.21;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3443,393,0 chrIV 618471 . G A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=23.62;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3354,363,0 chrIV 618665 . A G 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=18.7299;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.420;QD=21.77;ReadPosRankSum=1.650;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,168:173:99:3766,444,0 chrIV 618809 . G A 3935.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.8807;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.42;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3935,432,0 chrIV 618872 . G A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.58;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3771,426,0 chrIV 619168 . C T 2367 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.72;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2400,261,0 chrIV 619185 . T G 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=106;Dels=0.00;FS=3.979;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-1.105;QD=19.36;ReadPosRankSum=1.699;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2085,240,0 chrIV 619315 . T C 3358.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.1401;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.39;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3358,381,0 chrIV 619433 . G A 3280.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=22.62;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3280,360,0 chrIV 619442 . T C 2984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=143;Dels=0.00;FS=2.589;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=-1.190;QD=20.87;ReadPosRankSum=2.937;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:3017,348,0 chrIV 619456 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=20.45;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3141,357,0 chrIV 619470 . T C 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=162;Dels=0.00;FS=2.957;HaplotypeScore=8.2540;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=-0.629;QD=18.60;ReadPosRankSum=2.343;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3046,351,0 chrIV 619532 . T C 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=1.489;QD=20.16;ReadPosRankSum=1.710;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:1,156:160:99:3258,366,0 chrIV 619600 . T G 3945.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.21;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3945,459,0 chrIV 619621 . C T 4151.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=21.85;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4151,456,0 chrIV 619697 . G A 3027 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=21.78;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3060,348,0 chrIV 619698 . C T 3186 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=22.92;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3219,348,0 chrIV 619787 . C G 2607 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.72;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2640,303,0 chrIV 619809 . G A 2887 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=22.55;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2920,321,0 chrIV 619843 . T C 2446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=114;Dels=0.00;FS=10.344;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=0.076;QD=21.46;ReadPosRankSum=2.407;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2479,279,0 chrIV 619883 . A G 2079 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=19.99;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2112,246,0 chrIV 619900 . C T 1421 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.56;MQ0=0;QD=17.12;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1454,168,0 chrIV 619930 . G A 1181 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;QD=16.63;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1214,135,0 chrIV 619942 . A T 1183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.582;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.17;MQ0=0;MQRankSum=-1.163;QD=16.21;ReadPosRankSum=1.590;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1216,135,0 chrIV 619943 . A C 1120 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=15.34;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1153,129,0 chrIV 620056 . G A 1309 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;QD=17.69;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1342,147,0 chrIV 620061 . T A 1122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=2.868;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;MQRankSum=-1.413;QD=16.26;ReadPosRankSum=2.235;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1155,135,0 chrIV 620075 . T G 809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.04;MQ0=0;MQRankSum=-1.237;QD=12.84;ReadPosRankSum=1.512;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:842,99,0 chrIV 620079 . G A 757 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.49;MQ0=0;QD=12.21;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:90:790,90,0 chrIV 620108 . T C 938 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=0;QD=13.40;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:971,111,0 chrIV 620254 . G A 2739 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.45;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2772,303,0 chrIV 620359 . A G 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=4.559;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=1.509;QD=21.65;ReadPosRankSum=1.707;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3107,366,0 chrIV 620379 . A G 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=4.281;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.137;QD=20.96;ReadPosRankSum=1.655;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2862,327,0 chrIV 620421 . C T 2592 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.57;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2625,294,0 chrIV 620546 . C T 4486.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.21;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4486,486,0 chrIV 620822 . T A 1750 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=20.11;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1783,192,0 chrIV 620832 . C T 1382 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=17.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1415,162,0 chrIV 620943 . G C 1133 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.60;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1166,132,0 chrIV 620963 . A G 751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-1.733;QD=20.30;ReadPosRankSum=1.639;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:1,36:37:93:784,93,0 chrIV 621009 . T C 563 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.829;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.518;QD=17.59;ReadPosRankSum=2.297;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:2,30:32:66:596,66,0 chrIV 621343 . C T 4596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=193;Dels=0.00;FS=3.420;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.512;QD=23.81;ReadPosRankSum=-0.944;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:1,189:193:99:4596,480,0 chrIV 621542 . G A 2849 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.58;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2882,312,0 chrIV 621550 . G A 2623 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.82;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2656,300,0 chrIV 621579 . T C 2161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=122;Dels=0.00;FS=3.632;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=1.184;QD=17.71;ReadPosRankSum=1.703;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2194,249,0 chrIV 621667 . A C 2512 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.76;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2545,285,0 chrIV 621781 . G A 2338 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.70;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2371,264,0 chrIV 621798 . C T 2347 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.79;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2380,255,0 chrIV 621827 . C T 1882 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.60;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1915,210,0 chrIV 622375 . T C 2119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.112;QD=22.07;ReadPosRankSum=1.696;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2152,240,0 chrIV 622477 . G A 2709 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.2706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2742,309,0 chrIV 622651 . T C 3586.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3586,408,0 chrIV 622741 . G A 3403.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.2693;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.31;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3403,387,0 chrIV 622798 . A G 3500.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.33;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3500,402,0 chrIV 622891 . C T 3868.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.44;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3868,423,0 chrIV 622991 . A G 3617.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.19;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3617,417,0 chrIV 623039 . A G 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=140;Dels=0.00;FS=6.441;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.579;QD=22.41;ReadPosRankSum=2.414;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:3171,366,0 chrIV 623053 . T C 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=155;Dels=0.00;FS=2.973;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.293;QD=20.77;ReadPosRankSum=2.402;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3253,369,0 chrIV 623197 . T C 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=181;Dels=0.00;FS=6.074;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.062;QD=22.36;ReadPosRankSum=2.950;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:3,176:181:99:4047,471,0 chrIV 623453 . G A 3876.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3876,423,0 chrIV 623798 . T C 3109 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3142,354,0 chrIV 623886 . G A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3392,372,0 chrIV 623966 . C A 2689 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2722,306,0 chrIV 624319 . A G 5048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=224;Dels=0.00;FS=13.035;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.009;QD=22.54;ReadPosRankSum=2.861;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:3,221:224:99:5048,588,0 chrIV 624521 . A G 4409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.990;DP=220;Dels=0.00;FS=5.239;HaplotypeScore=19.1870;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.299;QD=20.04;ReadPosRankSum=3.381;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:4,215:220:99:4409,501,0 chrIV 624565 . T A 3187 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.25;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3220,360,0 chrIV 624583 . T C 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=155;Dels=0.00;FS=6.098;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=0.680;QD=20.73;ReadPosRankSum=2.837;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:3,151:155:99:3246,366,0 chrIV 624733 . G T 2322 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.2971;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.70;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2355,267,0 chrIV 624782 . G C 3523.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.97;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3523,408,0 chrIV 624847 . G C 2787 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.9198;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.77;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2820,333,0 chrIV 624920 . T G 3094 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=134.3178;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=21.19;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3127,354,0 chrIV 624930 . T C 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=148.8589;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=-0.506;QD=20.57;ReadPosRankSum=1.711;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3312,381,0 chrIV 624969 . T G 3892.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.01;FS=0.000;HaplotypeScore=15.0586;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.27;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3892,456,0 chrIV 625056 . C T 4391.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.6760;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.26;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4391,474,0 chrIV 625173 . A G 3672.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.8241;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.07;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3672,423,0 chrIV 625250 . C T 4235.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.5531;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.53;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4235,468,0 chrIV 625525 . A G 5571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.380;DP=239;Dels=0.00;FS=4.512;HaplotypeScore=16.6409;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.113;QD=23.31;ReadPosRankSum=2.549;SB=-2.950e+03 GT:AD:DP:GQ:PL 1/1:4,235:239:99:5571,627,0 chrIV 625729 . G A 3954.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=16.4565;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.92;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3954,444,0 chrIV 625832 . T A 3739.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.7694;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.09;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3739,405,0 chrIV 626057 . G C 2805 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.0501;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.21;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:2838,336,0 chrIV 626244 . G A 3166 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.63;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3199,345,0 chrIV 626394 . T C 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=4.248;HaplotypeScore=8.4718;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.762;QD=21.71;ReadPosRankSum=1.677;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2769,318,0 chrIV 626706 . G A 2473 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2506,285,0 chrIV 627107 . G A 3589.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.31;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3589,396,0 chrIV 627332 . A G 2823 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.07;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2856,324,0 chrIV 627941 . A G 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=115;Dels=0.00;FS=2.870;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.599;QD=22.29;ReadPosRankSum=2.341;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:2,111:115:99:2596,294,0 chrIV 628391 . T C 5143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=224;Dels=0.00;FS=2.849;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.170;QD=22.96;ReadPosRankSum=2.406;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:5143,594,0 chrIV 628588 . C T 3884.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.45;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3884,429,0 chrIV 628785 . T C 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=143;Dels=0.00;FS=2.660;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-0.146;QD=23.82;ReadPosRankSum=2.415;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3406,387,0 chrIV 628915 . C T 2454 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.53;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2487,267,0 chrIV 628932 . T C 2223 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=19.00;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2256,258,0 chrIV 628955 . A G 2667 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=18.91;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2700,306,0 chrIV 629029 . T G 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=132;Dels=0.00;FS=4.116;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=0.336;QD=19.12;ReadPosRankSum=1.705;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,128:132:99:2557,294,0 chrIV 629044 . G T 2242 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=20.57;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2275,252,0 chrIV 629055 . C T 2038 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.59;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2071,231,0 chrIV 629111 . C T 2200 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.00;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2233,240,0 chrIV 629128 . T C 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=100;Dels=0.02;FS=0.000;HaplotypeScore=7.2420;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-0.054;QD=21.15;ReadPosRankSum=1.696;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2148,243,0 chrIV 629226 . A G 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=110;Dels=0.00;FS=3.613;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=0.545;QD=22.06;ReadPosRankSum=1.700;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2460,279,0 chrIV 629238 . C G 2265 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=21.17;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2298,264,0 chrIV 629315 . T G 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=0.566;QD=23.72;ReadPosRankSum=1.698;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2452,279,0 chrIV 629352 . T C 2412 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=22.97;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2445,279,0 chrIV 629383 . G A 2327 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=21.75;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2360,267,0 chrIV 629395 . C A 2543 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=23.55;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2576,282,0 chrIV 629422 . A G 2349 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=21.95;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2382,267,0 chrIV 629477 . A G 1678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;MQRankSum=-0.554;QD=17.30;ReadPosRankSum=1.554;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1711,201,0 chrIV 629481 . A G 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=2.891;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.25;MQ0=0;MQRankSum=-1.495;QD=18.05;ReadPosRankSum=2.388;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1477,174,0 chrIV 629492 . A G 1729 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=18.79;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1762,207,0 chrIV 629523 . G A 1670 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=19.20;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1703,195,0 chrIV 629614 . C T 2347 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=22.57;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2380,264,0 chrIV 629639 . T C 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=107;Dels=0.00;FS=3.005;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;MQRankSum=1.277;QD=17.24;ReadPosRankSum=2.358;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:1878,222,0 chrIV 629643 . A G 1748 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.95;MQ0=0;QD=17.14;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1781,213,0 chrIV 629651 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.05;MQ0=0;QD=15.80;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1724,204,0 chrIV 629687 . A G 1315 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;QD=12.29;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1348,162,0 chrIV 629700 . C T 1276 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=12.76;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1309,150,0 chrIV 629701 . C T 1254 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=12.54;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1287,150,0 chrIV 629702 . G A 1248 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;QD=12.12;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,100:103:99:1281,150,0 chrIV 629724 . T A 1737 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=42.59;MQ0=0;QD=15.24;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1770,198,0 chrIV 629797 . A G 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=109;Dels=0.01;FS=7.387;HaplotypeScore=15.5415;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-2.243;QD=21.32;ReadPosRankSum=2.404;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2357,264,0 chrIV 629952 . C T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.8051;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=24.31;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4060,444,0 chrIV 630050 . T C 4213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.3647;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.638;QD=22.17;ReadPosRankSum=1.677;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4213,483,0 chrIV 630103 . C T 4855.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=16.5847;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.79;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4855,546,0 chrIV 630138 . G A 4124.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=22.17;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4124,447,0 chrIV 630449 . A G 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-1.272;QD=20.28;ReadPosRankSum=2.313;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:2,142:146:99:2994,339,0 chrIV 630492 . C T 2933 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.89;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2966,318,0 chrIV 630548 . T C 3381.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.95;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3381,399,0 chrIV 630621 . T C 2193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=112;Dels=0.00;FS=4.286;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=0.409;QD=19.58;ReadPosRankSum=1.701;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2226,255,0 chrIV 630685 . A T 686 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=35.2273;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=9.27;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:93:719,93,0 chrIV 630777 . G A 1952 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.40;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1985,216,0 chrIV 630888 . C T 2224 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.04;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2257,249,0 chrIV 631591 . C T 4962.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=17.1868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4962,552,0 chrIV 631794 . A G 4837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=19.7332;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.819;QD=21.99;ReadPosRankSum=1.716;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4837,564,0 chrIV 632423 . T C 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.470;QD=22.71;ReadPosRankSum=1.627;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3053,345,0 chrIV 632607 . C T 3898.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.27;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3898,423,0 chrIV 632746 . C T 2845 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.76;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2878,312,0 chrIV 632937 . G A 2340 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.6689;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.35;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2373,267,0 chrIV 632958 . C T 2466 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.63;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2499,282,0 chrIV 633018 . C T 2798 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.93;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2831,309,0 chrIV 633231 . G A 2591 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.99;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2624,291,0 chrIV 633250 . T C 2366 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.32;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2399,273,0 chrIV 633882 . A T 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.845;QD=22.21;ReadPosRankSum=1.690;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3643,399,0 chrIV 633960 . G A 4272.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=17.8135;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.22;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4272,465,0 chrIV 633999 . G C 4598.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.5919;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.19;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4598,537,0 chrIV 634044 . T C 4262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.225;DP=192;Dels=0.00;FS=2.836;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.344;QD=22.20;ReadPosRankSum=1.665;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4262,464,0 chrIV 634116 . A G 4573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=4.202;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.260;QD=22.64;ReadPosRankSum=1.663;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4573,516,0 chrIV 634140 . A C 4931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=237;Dels=0.00;FS=4.942;HaplotypeScore=15.1479;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-1.095;QD=20.81;ReadPosRankSum=1.717;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,233:237:99:4931,561,0 chrIV 634593 . T C 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.178;DP=182;Dels=0.00;FS=8.305;HaplotypeScore=22.9580;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.034;QD=21.58;ReadPosRankSum=3.401;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:4,176:182:99:3927,450,0 chrIV 634632 . C T 5019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.4014;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.332;QD=24.01;ReadPosRankSum=-0.366;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:5019,549,0 chrIV 634755 . G A 4708.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=24.14;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4708,510,0 chrIV 634789 . G T 5311.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.0405;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=24.14;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5311,582,0 chrIV 634905 . G A 3781.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.2790;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.77;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3781,411,0 chrIV 635008 . C T 5463.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=22.95;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5463,597,0 chrIV 635025 . T C 4874.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=20.92;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4874,575,0 chrIV 635043 . C T 4378.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=20.27;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4378,489,0 chrIV 635070 . G T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.49;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4179,462,0 chrIV 635136 . A G 4976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=224;Dels=0.00;FS=5.114;HaplotypeScore=19.8224;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.577;QD=22.21;ReadPosRankSum=1.701;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:4976,561,0 chrIV 635340 . T C 8774.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=376;Dels=0.00;FS=0.000;HaplotypeScore=17.8574;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.042;QD=23.34;ReadPosRankSum=1.723;SB=-3.455e+03 GT:AD:DP:GQ:PL 1/1:1,374:376:99:8774,996,0 chrIV 635526 . A G 5654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=21.3784;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.954;QD=18.97;ReadPosRankSum=2.416;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:2,295:298:99:5654,657,0 chrIV 636201 . T C 5659.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=13.5564;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.82;SB=-2.834e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5659,645,0 chrIV 636237 . G A 4283.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.10;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4283,486,0 chrIV 636250 . C T 4597.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.32;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4597,513,0 chrIV 636465 . A C 3286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.316;QD=20.67;ReadPosRankSum=1.710;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3286,387,0 chrIV 636737 . A T 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=132;Dels=0.00;FS=2.900;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.034;QD=21.64;ReadPosRankSum=2.319;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2890,321,0 chrIV 636762 . T C 2337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=3.579;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.273;QD=20.50;ReadPosRankSum=1.702;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2370,273,0 chrIV 637257 . G A 3101 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.7742;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.67;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3134,339,0 chrIV 637466 . C G 2543 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.71;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2576,300,0 chrIV 637627 . C T 2790 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.14;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2823,312,0 chrIV 637715 . C G 2082 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2115,240,0 chrIV 638210 . G C 2817 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2850,327,0 chrIV 638458 . C T 3485.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3485,390,0 chrIV 638634 . G A 4846.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.75;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,209:213:99:4846,522,0 chrIV 638815 . C T 9869.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=411;Dels=0.00;FS=0.000;HaplotypeScore=11.6048;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.851;QD=24.01;ReadPosRankSum=0.453;SB=-3.639e+03 GT:AD:DP:GQ:PL 1/1:1,409:411:99:9869,1089,0 chrIV 638842 . A G 9057.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=398;Dels=0.00;FS=11.823;HaplotypeScore=13.6740;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.485;QD=22.76;ReadPosRankSum=2.906;SB=-4.036e+03 GT:AD:DP:GQ:PL 1/1:3,392:398:99:9057,1035,0 chrIV 639043 . C T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=21.9189;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=13.28;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,286:289:99:3839,438,0 chrIV 639100 . T C 4719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.596;DP=258;Dels=0.00;FS=4.806;HaplotypeScore=13.7635;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.705;QD=18.29;ReadPosRankSum=1.718;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,253:258:99:4719,537,0 chrIV 639223 . G C 3190 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.32;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3223,369,0 chrIV 639565 . G A 3743.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.02;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3743,414,0 chrIV 639896 . C T 737 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:84:770,84,0 chrIV 640048 . C T 1370 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1403,156,0 chrIV 640113 . G A 2133 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.24;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2166,231,0 chrIV 640481 . G A 5100.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.2332;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.29;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:5100,561,0 chrIV 640565 . A G 4844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=226;Dels=0.00;FS=2.836;HaplotypeScore=11.7441;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.027;QD=21.43;ReadPosRankSum=2.428;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:4844,555,0 chrIV 640997 . T A 4254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=201;Dels=0.00;FS=9.944;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.473;QD=21.16;ReadPosRankSum=2.364;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4254,471,0 chrIV 641111 . C T 3929.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.39;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3929,444,0 chrIV 641285 . C T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.18;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3622,396,0 chrIV 641507 . T G 2636 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.7507;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.76;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2669,303,0 chrIV 641546 . A G 2583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.166;DP=126;Dels=0.00;FS=12.828;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.633;QD=20.50;ReadPosRankSum=3.333;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:4,122:126:99:2616,303,0 chrIV 641725 . G C 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.705;QD=22.63;ReadPosRankSum=0.309;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2952,330,0 chrIV 641786 . T A 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.386;QD=23.52;ReadPosRankSum=1.707;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3316,363,0 chrIV 642149 . C T 3462.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3462,381,0 chrIV 642326 . T C 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.2540;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-1.123;QD=22.75;ReadPosRankSum=1.637;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4163,477,0 chrIV 642569 . T C 3636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=3.772;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=-0.020;QD=20.66;ReadPosRankSum=1.712;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3636,411,0 chrIV 642572 . C T 3704.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=20.93;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3704,411,0 chrIV 642692 . G A 2203 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=19.16;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2236,240,0 chrIV 642698 . C T 2149 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.1430;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=18.69;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2182,237,0 chrIV 642752 . A T 2616 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=17.92;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2649,294,0 chrIV 642755 . G A 2631 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.2340;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=18.66;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2664,294,0 chrIV 642973 . G A 3401.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.6485;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.38;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3401,381,0 chrIV 643024 . G T 2392 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=20.98;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2425,264,0 chrIV 643077 . T G 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=147;Dels=0.00;FS=3.040;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.415;QD=22.65;ReadPosRankSum=2.348;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:3329,378,0 chrIV 643082 . C T 3731.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=23.32;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3731,411,0 chrIV 643127 . G A 3174 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.61;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3207,354,0 chrIV 643129 . C T 2957 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.58;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2990,342,0 chrIV 643177 . A T 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=172;Dels=0.00;FS=3.916;HaplotypeScore=17.3944;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-1.060;QD=21.78;ReadPosRankSum=1.691;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3747,408,0 chrIV 643210 . G A 4706.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.77;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4706,510,0 chrIV 643256 . T C 4860.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.6998;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.99;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4860,561,0 chrIV 643436 . C T 6129.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=11.5432;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.73;SB=-3.412e+03 GT:AD:DP:GQ:PL 1/1:0,280:282:99:6129,664,0 chrIV 643602 . A G 4591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.675;DP=225;Dels=0.00;FS=7.909;HaplotypeScore=16.5856;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=0.746;QD=20.40;ReadPosRankSum=3.817;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:5,216:225:99:4591,525,0 chrIV 643715 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.55;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3136,348,0 chrIV 643760 . C T 2414 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=17.88;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2447,267,0 chrIV 643772 . T C 2390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=129;Dels=0.00;FS=5.161;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.650;QD=18.53;ReadPosRankSum=1.705;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2423,273,0 chrIV 643795 . C T 2388 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=19.90;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2421,267,0 chrIV 643844 . G A 2268 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.1835;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.60;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2301,249,0 chrIV 643929 . T G 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=110;Dels=0.00;FS=2.601;HaplotypeScore=8.0321;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-0.459;QD=20.26;ReadPosRankSum=2.863;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:3,107:110:99:2262,267,0 chrIV 643973 . G A 2668 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.6104;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=22.80;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2701,288,0 chrIV 644054 . T C 2486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-1.340;QD=23.02;ReadPosRankSum=1.634;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,105:108:99:2519,285,0 chrIV 644081 . A G 2172 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.62;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2205,252,0 chrIV 644532 . A G 2188 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.19;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2221,264,0 chrIV 644619 . T C 2973 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=19.95;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3006,348,0 chrIV 644629 . T A 2926 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.00;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2959,330,0 chrIV 645246 . A G 1002 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.9866;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=18.56;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1035,120,0 chrIV 651525 . T A 343 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=3.99;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:42:376,42,0 chrIV 651528 . A G 323 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=3.59;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,90:90:42:356,42,0 chrIV 651534 . T A 337 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=3.92;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:42:370,42,0 chrIV 651540 . C A 377 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=4.77;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:45:410,45,0 chrIV 651556 . T A 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=0.21;SB=-1.118e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:6:47,6,0 chrIV 651580 . C T 939 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.12;MQ0=0;QD=9.30;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:972,105,0 chrIV 651590 . C T 1228 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.73;MQ0=0;QD=12.28;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1261,141,0 chrIV 651672 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=24.02;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3675,396,0 chrIV 651714 . G C 3397.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.7280;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=22.20;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3397,393,0 chrIV 651778 . C A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=22.87;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3316,372,0 chrIV 651813 . C T 3226.07 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.0135;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=21.65;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,145:149:99:3259,357,0 chrIV 651881 . C T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=22.58;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3477,378,0 chrIV 651974 . G A 3455.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=24.50;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3455,372,0 chrIV 652069 . A T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.90;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3262,354,0 chrIV 652106 . C A 2777 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=19.42;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2810,318,0 chrIV 652118 . A G 2523 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=17.28;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2556,285,0 chrIV 652176 . A C 2008 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.61;MQ0=0;QD=12.32;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2041,234,0 chrIV 652186 . G C 2064 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;QD=12.07;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2097,234,0 chrIV 652203 . A T 1939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=3.176;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;MQRankSum=-0.520;QD=12.12;ReadPosRankSum=1.710;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:1972,222,0 chrIV 652205 . A G 2065 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=12.75;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:2098,234,0 chrIV 652594 . T C 2408 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2441,273,0 chrIV 653143 . C T 1939 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=19.20;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1972,222,0 chrIV 653150 . C T 2098 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=21.19;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2131,228,0 chrIV 653208 . C T 2169 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=19.90;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2202,243,0 chrIV 653246 . T C 2511 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.25;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2544,303,0 chrIV 653286 . G C 1725 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.4745;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=16.59;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1758,201,0 chrIV 653323 . T G 1080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=5.855;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=0.607;QD=14.03;ReadPosRankSum=1.687;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1113,129,0 chrIV 653336 . C T 75.51 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=47.0481;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=1.05;SB=-5.295e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:12:108,12,0 chrIV 653936 . A G 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=108;Dels=0.00;FS=9.668;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.295;QD=19.87;ReadPosRankSum=2.934;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:3,103:108:99:2179,246,0 chrIV 654086 . C T 3018 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.54;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3051,339,0 chrIV 654179 . T C 3873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=178;Dels=0.00;FS=2.570;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.517;QD=21.76;ReadPosRankSum=2.938;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:3,174:178:99:3873,438,0 chrIV 654775 . C A 1905 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=16.42;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1938,210,0 chrIV 654780 . C T 1889 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;QD=16.15;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:1922,210,0 chrIV 654798 . T C 2003 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=14.41;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2036,237,0 chrIV 654890 . T G 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=4.239;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-1.356;QD=20.11;ReadPosRankSum=1.607;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2828,324,0 chrIV 654900 . A G 2943 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.02;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,142:147:99:2976,339,0 chrIV 655011 . G A 4768.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.0747;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=22.92;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4768,519,0 chrIV 655491 . G A 1679 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.66;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1712,189,0 chrIV 656349 . T C 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=13.5010;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.730;QD=21.45;ReadPosRankSum=1.703;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,120:124:99:2693,306,0 chrIV 656658 . T C 4167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.284;QD=22.05;ReadPosRankSum=1.714;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4167,492,0 chrIV 656959 . A G 4356.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=15.9585;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.17;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:4356,504,0 chrIV 657065 . G A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.44;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4242,456,0 chrIV 657111 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=15.6500;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.17;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3159,348,0 chrIV 657366 . G A 2280 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.92;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2313,255,0 chrIV 657792 . A G 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.236;QD=21.92;ReadPosRankSum=1.627;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2927,336,0 chrIV 658436 . T G 2528 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.41;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2561,294,0 chrIV 658469 . T C 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=125;Dels=0.00;FS=10.127;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-0.637;QD=19.72;ReadPosRankSum=1.460;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2498,267,0 chrIV 658478 . C T 2466 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.21;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2499,270,0 chrIV 658643 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.14;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3356,366,0 chrIV 658682 . G A 2664 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.66;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2697,303,0 chrIV 658775 . C T 3280.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.8480;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.47;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3280,357,0 chrIV 659198 . G T 2207 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=17.24;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2240,246,0 chrIV 659199 . T C 2086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-0.314;QD=16.30;ReadPosRankSum=1.650;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2119,243,0 chrIV 659402 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.63;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3304,372,0 chrIV 659467 . C T 2995 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.58;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3028,339,0 chrIV 659689 . T C 3595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.247;QD=22.90;ReadPosRankSum=1.644;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3595,405,0 chrIV 659864 . A T 3646.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2770;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.93;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3646,402,0 chrIV 659912 . G C 3713.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.10;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3713,438,0 chrIV 659970 . C T 3607.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.6522;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=23.27;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3607,405,0 chrIV 660025 . G C 3090 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.91;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3123,357,0 chrIV 660107 . C T 3319.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=22.43;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3319,366,0 chrIV 660131 . C T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.01;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3411,390,0 chrIV 660153 . C T 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.585;DP=154;Dels=0.00;FS=6.196;HaplotypeScore=2.9293;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=2.810;QD=16.72;ReadPosRankSum=2.975;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:7,147:154:99:2608,303,0 chrIV 660155 . T A 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.734;DP=154;Dels=0.00;FS=1.310;HaplotypeScore=3.7180;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=2.361;QD=16.64;ReadPosRankSum=3.997;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:9,145:154:99:2595,303,0 chrIV 660197 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.45;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3266,363,0 chrIV 660237 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.67;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2968,333,0 chrIV 660248 . T C 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=151;Dels=0.00;FS=6.050;HaplotypeScore=8.0550;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.819;QD=19.26;ReadPosRankSum=2.873;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:3,147:151:99:2942,333,0 chrIV 660411 . T C 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.639;DP=120;Dels=0.00;FS=12.105;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.017;QD=21.22;ReadPosRankSum=2.908;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2580,294,0 chrIV 660498 . A G 3504.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.90;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3504,411,0 chrIV 660541 . G A 3433.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.68;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3433,372,0 chrIV 660681 . C G 3620.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.63;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3620,408,0 chrIV 660748 . C T 3811.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.2003;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.90;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3811,429,0 chrIV 660773 . T C 3731.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.17;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3731,432,0 chrIV 660788 . T C 3932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=196;Dels=0.00;FS=7.389;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.006;QD=20.06;ReadPosRankSum=2.374;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:3932,447,0 chrIV 660950 . A G 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.7731;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=0.075;QD=22.02;ReadPosRankSum=1.711;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3546,408,0 chrIV 661137 . A G 3108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=148;Dels=0.00;FS=3.252;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-0.421;QD=21.00;ReadPosRankSum=1.685;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3141,357,0 chrIV 661159 . G T 3175 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.04;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3208,345,0 chrIV 661166 . C T 3099 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=17.91;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3132,345,0 chrIV 661181 . T C 3140 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=17.54;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3173,360,0 chrIV 661358 . A T 5066.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=24.36;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5066,558,0 chrIV 662283 . A G 2848 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.49;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2881,333,0 chrIV 662378 . T C 2894 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.2106;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.82;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2927,339,0 chrIV 662835 . T C 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=4.661;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.199;QD=21.39;ReadPosRankSum=1.643;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,116:120:99:2600,291,0 chrIV 662929 . C T 2524 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.37;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2557,279,0 chrIV 663117 . A G 1426 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.61;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1459,165,0 chrIV 663138 . G A 1564 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1760;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.14;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1597,174,0 chrIV 663815 . T C 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.01;FS=4.044;HaplotypeScore=4.2904;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=-1.202;QD=17.78;ReadPosRankSum=1.691;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3074,345,0 chrIV 663819 . T C 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=167;Dels=0.00;FS=11.281;HaplotypeScore=4.2904;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=0.555;QD=18.20;ReadPosRankSum=2.958;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:3,162:167:99:3073,342,0 chrIV 663861 . C T 3786.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=19.82;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3786,408,0 chrIV 663915 . T C 3213.98 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.01;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3247,369,0 chrIV 664186 . T C 2483 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.4183;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.17;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2516,288,0 chrIV 664257 . C T 2463 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=12.1582;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.99;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2496,270,0 chrIV 664347 . T G 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.203;DP=125;Dels=0.00;FS=5.272;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.092;QD=21.59;ReadPosRankSum=3.373;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:4,120:125:99:2732,318,0 chrIV 664395 . G A 2996 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.76;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3029,327,0 chrIV 664456 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=3.819;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.817;QD=21.58;ReadPosRankSum=1.689;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3452,405,0 chrIV 664477 . T C 3523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.605;QD=20.85;ReadPosRankSum=1.650;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3523,402,0 chrIV 665204 . A G 2581 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.16;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2614,294,0 chrIV 665718 . C T 4235.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.4054;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4235,450,0 chrIV 665841 . A G 4061.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.95;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4061,465,0 chrIV 666663 . T C 3351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.957;QD=21.90;ReadPosRankSum=1.664;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3351,378,0 chrIV 666947 . C G 2420 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6365;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=19.84;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2453,276,0 chrIV 666968 . G A 1700 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;QD=16.83;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1733,195,0 chrIV 666977 . A T 1476 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;QD=17.16;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1509,171,0 chrIV 666994 . C T 1205 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;QD=13.24;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1238,138,0 chrIV 667014 . C A 1437 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=14.09;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1470,156,0 chrIV 667027 . C T 1409 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=13.81;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1442,156,0 chrIV 667031 . T A 1379 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=13.93;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1412,150,0 chrIV 667151 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.5668;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.72;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2830,318,0 chrIV 667309 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.9907;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.48;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2955,336,0 chrIV 667439 . C G 3139 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.65;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3172,360,0 chrIV 667469 . A T 2662 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.96;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2695,300,0 chrIV 667473 . T C 2528 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.30;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2561,291,0 chrIV 667576 . T G 2658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=3.171;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.661;QD=23.95;ReadPosRankSum=1.638;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2691,309,0 chrIV 667644 . T C 2148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=93;Dels=0.00;FS=2.972;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.967;QD=23.10;ReadPosRankSum=2.370;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2181,252,0 chrIV 667780 . T C 1994 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.16;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2027,237,0 chrIV 667858 . G A 2782 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=23.58;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2815,306,0 chrIV 668436 . A C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=1;QD=3.96;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,4:5:6:51,6,0 chrIV 668476 . C T 925 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=14.45;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:958,102,0 chrIV 668480 . A C 962 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=0;QD=14.36;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:995,114,0 chrIV 668554 . A C 1237 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;QD=18.46;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1270,144,0 chrIV 668626 . T A 1085 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;QD=22.14;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1118,123,0 chrIV 668861 . G A 842 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;QD=21.59;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:96:875,96,0 chrIV 669064 . A G 3120 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3153,357,0 chrIV 670000 . T C 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=140;Dels=0.00;FS=8.764;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.716;QD=20.79;ReadPosRankSum=2.414;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2944,333,0 chrIV 670255 . C T 5081.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.03;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5081,552,0 chrIV 670324 . T A 5272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=243;Dels=0.00;FS=7.480;HaplotypeScore=10.4655;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.561;QD=21.70;ReadPosRankSum=2.369;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:2,241:243:99:5272,585,0 chrIV 670418 . A T 4901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.370;QD=22.18;ReadPosRankSum=1.685;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:4901,546,0 chrIV 670636 . G C 2964 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.0766;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=17.33;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:2997,348,0 chrIV 670771 . A C 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.991;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=1.206;QD=20.14;ReadPosRankSum=-0.776;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:2994,331,0 chrIV 671025 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=21.58;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3141,345,0 chrIV 671041 . T A 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=149;Dels=0.00;FS=7.886;HaplotypeScore=7.3860;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-0.141;QD=21.46;ReadPosRankSum=2.416;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3230,351,0 chrIV 671079 . A G 2848 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.5451;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=17.80;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2881,321,0 chrIV 671086 . G C 2644 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=16.84;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:2677,303,0 chrIV 671207 . G A 2451 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.50;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2484,273,0 chrIV 671226 . C G 2318 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=21.27;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2351,264,0 chrIV 671379 . T C 2294 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=16.15;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2327,270,0 chrIV 671381 . T C 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=139;Dels=0.00;FS=2.879;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=-0.027;QD=17.24;ReadPosRankSum=2.414;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2429,276,0 chrIV 671460 . G A 2738 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.28;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2771,315,0 chrIV 671508 . G A 2606 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.89;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2639,288,0 chrIV 671726 . T G 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=139;Dels=0.00;FS=3.238;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.771;QD=22.35;ReadPosRankSum=1.707;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:3139,360,0 chrIV 671820 . A G 2749 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.35;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2782,315,0 chrIV 671958 . T C 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-0.767;QD=23.41;ReadPosRankSum=1.704;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2889,327,0 chrIV 672136 . T C 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-1.594;QD=21.29;ReadPosRankSum=1.704;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2716,306,0 chrIV 672138 . A G 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=130;Dels=0.00;FS=3.590;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.108;QD=20.22;ReadPosRankSum=1.597;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2661,303,0 chrIV 672181 . G A 2494 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.14;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2527,270,0 chrIV 672351 . C T 2462 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.79;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2495,273,0 chrIV 672652 . C T 5963.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.34;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5963,643,0 chrIV 672752 . G A 6241.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.29;SB=-3.068e+03 GT:AD:DP:GQ:PL 1/1:0,280:280:99:6241,690,0 chrIV 672865 . A G 5281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.681;DP=260;Dels=0.00;FS=5.966;HaplotypeScore=21.1264;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.075;QD=20.31;ReadPosRankSum=2.902;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:3,252:260:99:5281,618,0 chrIV 673035 . T A 4394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=4.140;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.500;QD=24.41;ReadPosRankSum=1.713;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4394,483,0 chrIV 673237 . A G 2284 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.61;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2317,267,0 chrIV 673272 . A G 2062 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.2770;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.17;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2095,237,0 chrIV 673716 . C G 3720.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=23.11;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3720,423,0 chrIV 673838 . C T 2664 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.5728;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2697,303,0 chrIV 673951 . T C 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=173;Dels=0.00;FS=3.011;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;MQRankSum=0.567;QD=19.44;ReadPosRankSum=2.406;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:2,169:173:99:3363,378,0 chrIV 673957 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=173;Dels=0.00;FS=5.968;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;MQRankSum=-0.300;QD=19.36;ReadPosRankSum=2.947;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:3,168:173:99:3349,375,0 chrIV 673965 . G A 3493.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=20.19;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3493,375,0 chrIV 673982 . A G 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=172;Dels=0.00;FS=11.595;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=0.994;QD=17.80;ReadPosRankSum=2.899;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:3,166:172:99:3094,351,0 chrIV 674236 . A G 4108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=-0.786;QD=22.21;ReadPosRankSum=1.713;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,182:185:99:4108,462,0 chrIV 674321 . T C 4134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=200;Dels=0.00;FS=3.850;HaplotypeScore=10.3564;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.123;QD=20.67;ReadPosRankSum=1.697;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4134,468,0 chrIV 674365 . A G 4266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=185;Dels=0.00;FS=3.018;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.564;QD=23.06;ReadPosRankSum=2.423;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4266,480,0 chrIV 674440 . C A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=22.84;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3312,363,0 chrIV 674458 . T G 2693 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=20.72;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2726,306,0 chrIV 674459 . A G 2677 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=20.59;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2710,306,0 chrIV 674519 . A G 2375 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.85;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2408,276,0 chrIV 674711 . T C 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=0.606;QD=21.09;ReadPosRankSum=1.704;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2648,300,0 chrIV 674716 . C G 2446 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=19.41;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2479,282,0 chrIV 674810 . A G 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.198;DP=143;Dels=0.00;FS=5.178;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.329;QD=17.23;ReadPosRankSum=3.396;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:4,137:143:99:2497,285,0 chrIV 674927 . A G 1742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.274;DP=106;Dels=0.00;FS=8.695;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.572;QD=16.43;ReadPosRankSum=3.374;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:4,102:106:99:1775,207,0 chrIV 674947 . T G 1695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=106;Dels=0.00;FS=3.050;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.755;QD=15.99;ReadPosRankSum=2.357;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1728,198,0 chrIV 675285 . T C 2146 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2179,240,0 chrIV 675634 . T C 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=134;Dels=0.00;FS=2.979;HaplotypeScore=10.6410;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.456;QD=20.24;ReadPosRankSum=2.375;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:2,130:134:99:2745,309,0 chrIV 675790 . C A 3015 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.51;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3048,342,0 chrIV 675810 . T A 2471 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=19.77;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2504,285,0 chrIV 675833 . A G 2310 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=18.19;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2343,276,0 chrIV 677241 . G A 4650.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.41;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4650,504,0 chrIV 677543 . A G 3988.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.53;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3988,453,0 chrIV 677658 . A G 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.713;QD=21.69;ReadPosRankSum=1.707;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2983,351,0 chrIV 677713 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4564;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.71;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3073,333,0 chrIV 677729 . C T 3041 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.75;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3074,345,0 chrIV 678076 . T C 725 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.14;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:87:758,87,0 chrIV 678110 . G A 1062 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.04;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1095,120,0 chrIV 678128 . C T 1224 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=18.83;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1257,135,0 chrIV 678156 . T C 895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=0.023;QD=16.89;ReadPosRankSum=2.357;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:99:928,108,0 chrIV 678436 . G A 3502.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=15.0650;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.19;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3502,375,0 chrIV 678773 . T C 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=3.278;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.732;QD=22.84;ReadPosRankSum=1.680;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3093,339,0 chrIV 678820 . A C 2973 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=14.0631;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.39;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3006,342,0 chrIV 678958 . G A 3864.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.7662;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3864,420,0 chrIV 679260 . A G 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8710;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.477;QD=20.78;ReadPosRankSum=1.705;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,126:130:99:2734,309,0 chrIV 679393 . G A 3313.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3313,360,0 chrIV 679438 . A T 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=3.932;HaplotypeScore=9.3683;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.790;QD=24.00;ReadPosRankSum=1.656;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3312,363,0 chrIV 679489 . C T 2961 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2994,336,0 chrIV 679624 . T C 3856.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.03;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3856,444,0 chrIV 679781 . T C 3080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.774;QD=19.87;ReadPosRankSum=0.311;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3113,360,0 chrIV 679834 . T G 3752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=3.890;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=1.527;QD=22.20;ReadPosRankSum=1.712;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3752,435,0 chrIV 679949 . C G 2874 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.18;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2907,330,0 chrIV 679996 . A G 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.880;QD=23.37;ReadPosRankSum=1.704;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2884,330,0 chrIV 680087 . G A 2192 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=18.27;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2225,243,0 chrIV 680091 . C A 1972 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=16.16;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2005,231,0 chrIV 680123 . T C 1488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=115;Dels=0.00;FS=3.032;HaplotypeScore=84.8679;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=0.845;QD=12.94;ReadPosRankSum=2.364;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:1521,174,0 chrIV 680244 . G A 3476.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.81;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3476,396,0 chrIV 680288 . C T 2943 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.64;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2976,327,0 chrIV 680316 . C A 3137 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=22.90;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3170,345,0 chrIV 680423 . A G 4138.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.49;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,180:184:99:4138,474,0 chrIV 680490 . G C 5355.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.91;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,221:224:99:5355,609,0 chrIV 680614 . C T 4433.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=22.85;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4433,472,0 chrIV 680639 . A G 4152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.944;QD=21.85;ReadPosRankSum=1.695;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4152,483,0 chrIV 680727 . G A 4246.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.7516;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.34;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4246,459,0 chrIV 680751 . C T 3353.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=20.70;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3353,372,0 chrIV 680772 . A T 2896 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.5456;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=20.39;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2929,321,0 chrIV 680813 . A G 3058 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=19.48;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3091,348,0 chrIV 680821 . T A 2909 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=18.89;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2942,330,0 chrIV 680866 . C G 2388 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=16.03;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:2421,279,0 chrIV 680873 . C T 2233 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=15.62;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2266,252,0 chrIV 680975 . C T 2906 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.5019;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.69;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2939,330,0 chrIV 681141 . G A 2868 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.40;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2901,315,0 chrIV 681234 . G A 2851 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.13;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:2884,330,0 chrIV 681246 . T C 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-1.545;QD=19.76;ReadPosRankSum=1.709;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2957,339,0 chrIV 681304 . G A 2519 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=18.80;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2552,279,0 chrIV 681664 . G A 3181 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.7456;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.24;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3214,357,0 chrIV 681734 . G T 2433 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=22.74;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2466,267,0 chrIV 681886 . C T 669 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=35.5771;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;QD=15.56;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,42:43:87:702,87,0 chrIV 681918 . C T 545 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=0;QD=12.11;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:63:578,63,0 chrIV 681935 . A G 350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;MQRankSum=-1.646;QD=8.75;ReadPosRankSum=1.646;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,39:40:45:383,45,0 chrIV 681952 . C G 169.03 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.14;MQ0=0;QD=5.12;SB=-2.204e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:24:202,24,0 chrIV 681959 . T A 101.26 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=0;QD=4.05;SB=-2.227e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:15:134,15,0 chrIV 681960 . T G 104.26 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=0;QD=4.17;SB=-2.227e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:15:137,15,0 chrIV 681962 . A G 94.26 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=4.9410;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=0;QD=3.77;SB=-2.227e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:15:127,15,0 chrIV 682085 . G A 2027 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.34;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2060,228,0 chrIV 682093 . T C 1759 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=18.32;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1792,207,0 chrIV 682121 . A C 1454 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3145;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=15.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1487,174,0 chrIV 682154 . C T 1377 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=13.91;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1410,156,0 chrIV 682165 . G A 1384 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=12.58;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1417,159,0 chrIV 682178 . C T 1814 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=15.64;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1847,204,0 chrIV 682303 . T C 4984.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.7355;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.21;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4984,567,0 chrIV 682420 . G A 4369.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.8322;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=24.68;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4369,477,0 chrIV 682509 . C G 3064 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.03;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3097,348,0 chrIV 682954 . A G 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=133;Dels=0.00;FS=4.578;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.787;QD=20.95;ReadPosRankSum=1.706;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2820,318,0 chrIV 682960 . T C 2734 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.19;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2767,318,0 chrIV 683520 . A G 3292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.135;DP=157;Dels=0.00;FS=2.785;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.835;QD=20.97;ReadPosRankSum=2.371;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3292,375,0 chrIV 683610 . T C 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=160;Dels=0.00;FS=9.543;HaplotypeScore=13.4831;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-0.754;QD=19.61;ReadPosRankSum=2.418;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3171,357,0 chrIV 683639 . T A 3086 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=21.58;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3119,339,0 chrIV 683768 . T C 1698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=83;Dels=0.00;FS=4.260;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=1.039;QD=20.46;ReadPosRankSum=1.646;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,79:83:99:1731,198,0 chrIV 683805 . C T 1940 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=19.21;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1973,219,0 chrIV 683812 . G A 1976 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=17.64;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2009,225,0 chrIV 683834 . G C 2006 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=17.75;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2039,231,0 chrIV 683860 . T G 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.347;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=-0.181;QD=18.46;ReadPosRankSum=1.680;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2507,285,0 chrIV 683890 . C T 2342 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=19.04;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2375,258,0 chrIV 683918 . C T 2338 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.27;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2371,261,0 chrIV 684013 . T G 3841.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.9472;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=23.71;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3841,423,0 chrIV 684395 . G A 3581.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.25;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3581,387,0 chrIV 685013 . C T 3843.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3843,429,0 chrIV 685091 . A T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.4275;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.44;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3328,360,0 chrIV 685142 . G A 3198 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.36;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3231,363,0 chrIV 685189 . A T 3915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=171;Dels=0.00;FS=6.468;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.539;QD=22.89;ReadPosRankSum=2.363;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3915,438,0 chrIV 685290 . A G 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=-0.137;QD=20.93;ReadPosRankSum=1.682;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:2984,348,0 chrIV 685340 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2915,327,0 chrIV 685531 . C G 3700.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.13;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3700,417,0 chrIV 685659 . G A 3784.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.21;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3784,426,0 chrIV 685708 . T G 4016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=182;Dels=0.00;FS=3.492;HaplotypeScore=12.3604;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.713;QD=22.07;ReadPosRankSum=1.713;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4016,462,0 chrIV 685822 . G A 3860.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.81;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3860,426,0 chrIV 685839 . G A 3477.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9772;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.95;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3477,399,0 chrIV 686038 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.94;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2878,315,0 chrIV 686419 . T C 2387 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2420,276,0 chrIV 686709 . C A 2839 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2872,309,0 chrIV 686865 . A G 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=125;Dels=0.00;FS=3.081;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.000;QD=19.69;ReadPosRankSum=1.676;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2494,282,0 chrIV 686871 . T C 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-1.028;QD=19.98;ReadPosRankSum=1.704;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2491,291,0 chrIV 687255 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.06;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2967,333,0 chrIV 687279 . T G 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.080;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=1.540;QD=23.17;ReadPosRankSum=1.622;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2952,330,0 chrIV 687424 . C G 3273.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.9312;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.58;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3273,384,0 chrIV 687427 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.6513;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=21.30;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3366,384,0 chrIV 687498 . T A 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=150;Dels=0.00;FS=2.814;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-0.158;QD=22.73;ReadPosRankSum=2.400;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3409,372,0 chrIV 687533 . A G 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=182;Dels=0.00;FS=2.851;HaplotypeScore=3.9147;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-1.228;QD=19.04;ReadPosRankSum=2.093;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:2,177:182:99:3465,396,0 chrIV 687534 . G A 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=185;Dels=0.00;FS=2.862;HaplotypeScore=4.8128;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;MQRankSum=-1.904;QD=19.54;ReadPosRankSum=1.931;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:3614,402,0 chrIV 687589 . A C 4601.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.4887;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=19.33;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,234:238:99:4601,534,0 chrIV 687632 . G A 4545.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=21.34;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4545,492,0 chrIV 687643 . A G 3659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=3.864;HaplotypeScore=5.9133;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=0.665;QD=19.78;ReadPosRankSum=1.695;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3659,423,0 chrIV 687745 . A G 4037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.346;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.6590;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.684;QD=19.60;ReadPosRankSum=1.360;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4037,459,0 chrIV 687746 . G A 4153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.157;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.6856;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=-0.450;QD=19.78;ReadPosRankSum=2.064;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4153,459,0 chrIV 687830 . A G 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.3567;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.826;QD=20.34;ReadPosRankSum=1.712;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3498,402,0 chrIV 688177 . G A 1882 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.68;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1915,219,0 chrIV 688353 . A G 2953 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.24;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2986,336,0 chrIV 688415 . A G 3038 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=20.81;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3071,357,0 chrIV 688432 . G A 2924 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=19.11;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2957,321,0 chrIV 688437 . C A 2741 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9917;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=17.68;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2774,303,0 chrIV 688474 . A G 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=153;Dels=0.00;FS=3.558;HaplotypeScore=7.8163;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.160;QD=17.84;ReadPosRankSum=1.664;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2762,315,0 chrIV 688518 . G A 2739 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.02;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2772,318,0 chrIV 688530 . G A 2938 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.5302;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=19.59;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2971,324,0 chrIV 688602 . C A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.0313;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=19.93;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3408,372,0 chrIV 688608 . G A 3541.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.5038;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=20.59;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3541,381,0 chrIV 688643 . A T 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=201;Dels=0.00;FS=4.238;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=0.618;QD=20.69;ReadPosRankSum=1.715;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4158,465,0 chrIV 688689 . T G 5263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.724;QD=22.21;ReadPosRankSum=1.703;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:5263,623,0 chrIV 688821 . T C 4533.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.55;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4533,513,0 chrIV 688841 . C T 4206.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.57;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4206,465,0 chrIV 689214 . T C 3895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.7744;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.740;QD=21.76;ReadPosRankSum=1.693;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3895,432,0 chrIV 689315 . T C 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=23.8509;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.628;QD=21.66;ReadPosRankSum=1.675;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4007,459,0 chrIV 689403 . A G 4173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=181;Dels=0.00;FS=6.704;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.364;QD=23.06;ReadPosRankSum=2.422;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:4173,471,0 chrIV 689526 . T C 4323.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.88;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4323,489,0 chrIV 689532 . C G 4341.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.87;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4341,492,0 chrIV 689810 . A C 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.700;DP=164;Dels=0.00;FS=5.867;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.497;QD=20.78;ReadPosRankSum=2.957;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3408,393,0 chrIV 689833 . C T 3752.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.20;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3752,414,0 chrIV 690128 . G A 2905 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.35;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2938,330,0 chrIV 690152 . C T 2955 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.73;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2988,327,0 chrIV 690212 . G A 2722 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.43;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2755,300,0 chrIV 690267 . C A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.78;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3281,357,0 chrIV 690503 . T A 3154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=5.039;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=1.344;QD=23.54;ReadPosRankSum=1.655;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3187,345,0 chrIV 690529 . C T 3183 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.75;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3216,348,0 chrIV 690684 . A G 2262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=4.017;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-1.583;QD=19.50;ReadPosRankSum=1.643;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2295,267,0 chrIV 690688 . G C 2064 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=19.29;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2097,243,0 chrIV 690751 . G A 2188 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.84;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2221,243,0 chrIV 690855 . C T 3032 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.0650;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.80;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3065,330,0 chrIV 690909 . C G 2368 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.77;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2401,270,0 chrIV 690968 . C G 3026 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.46;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3059,348,0 chrIV 691713 . C T 4064.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.70;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4064,447,0 chrIV 691936 . T C 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=3.220;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-1.732;QD=21.40;ReadPosRankSum=1.712;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3638,423,0 chrIV 691984 . C T 4728.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.29;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,199:203:99:4728,513,0 chrIV 692140 . C T 3113 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.21;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3146,342,0 chrIV 692149 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=19.39;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2942,312,0 chrIV 692170 . A G 2760 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=18.40;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2793,318,0 chrIV 692212 . C T 3433.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=19.73;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3433,372,0 chrIV 692320 . C T 3000 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.9332;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.48;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3033,333,0 chrIV 692334 . C T 2712 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=19.65;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2745,297,0 chrIV 692518 . G A 4750.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.48;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4750,522,0 chrIV 692575 . A G 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.231;DP=206;Dels=0.00;FS=13.972;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=-0.572;QD=19.56;ReadPosRankSum=3.350;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:4,202:206:99:4030,471,0 chrIV 692593 . A G 3581.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=19.36;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3581,420,0 chrIV 692602 . A G 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.247;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=-0.053;QD=18.36;ReadPosRankSum=1.644;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3617,414,0 chrIV 692655 . T A 4064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=205;Dels=0.00;FS=14.703;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=0.142;QD=19.82;ReadPosRankSum=2.966;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:3,202:205:99:4064,438,0 chrIV 692797 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.14;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3267,357,0 chrIV 692839 . T C 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=133;Dels=0.00;FS=11.308;HaplotypeScore=12.5495;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-1.069;QD=21.48;ReadPosRankSum=2.855;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:3,129:133:99:2890,339,0 chrIV 693070 . G C 3434.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.2933;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.20;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,157:162:99:3434,390,0 chrIV 693184 . T C 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=0.561;QD=22.30;ReadPosRankSum=1.659;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3199,366,0 chrIV 693255 . C T 3673.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.49;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3673,399,0 chrIV 693728 . A G 4607.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.75;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4607,528,0 chrIV 693982 . G A 4763.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.01;FS=0.000;HaplotypeScore=37.3157;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=22.90;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4763,519,0 chrIV 694033 . T C 4387.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=20.22;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4387,510,0 chrIV 694079 . C T 3934.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=21.5044;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=17.64;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:3934,441,0 chrIV 694108 . C T 4242.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.01;FS=0.000;HaplotypeScore=42.4615;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=18.13;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4242,462,0 chrIV 694241 . C T 4939.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=196.1046;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=1;QD=20.93;SB=-3.012e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:4939,537,0 chrIV 694249 . A G 42.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.815;DP=222;Dels=0.00;FS=8.349;HaplotypeScore=414.1454;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=1;MQRankSum=-1.826;QD=0.19;ReadPosRankSum=-6.478;SB=-7.597e+01 GT:AD:DP:GQ:PL 1/1:198,19:222:9:75,9,0 chrIV 694457 . A G 3831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=170;Dels=0.00;FS=2.776;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=-0.744;QD=22.54;ReadPosRankSum=2.363;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3831,435,0 chrIV 694473 . T G 3604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=170;Dels=0.00;FS=3.828;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=0.523;QD=21.20;ReadPosRankSum=1.712;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3604,408,0 chrIV 694503 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=22.12;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3981,441,0 chrIV 694556 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=178;Dels=0.00;FS=2.979;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.975;QD=21.48;ReadPosRankSum=2.380;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:3824,432,0 chrIV 694587 . C T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.5176;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.28;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3475,381,0 chrIV 694789 . A C 4919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=218;Dels=0.01;FS=9.145;HaplotypeScore=26.4783;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.648;QD=22.56;ReadPosRankSum=2.392;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:4919,561,0 chrIV 694831 . A C 4462.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=119.1203;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.88;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4462,507,0 chrIV 695272 . T C 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;DP=153;Dels=0.00;FS=9.204;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.029;QD=19.97;ReadPosRankSum=3.345;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:4,149:153:99:3088,357,0 chrIV 695576 . A C 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=133;Dels=0.00;FS=6.667;HaplotypeScore=14.7294;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.009;QD=22.21;ReadPosRankSum=2.394;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2987,333,0 chrIV 695620 . G A 2821 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.21;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2854,321,0 chrIV 695635 . C T 2808 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.11;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2841,318,0 chrIV 695803 . T C 3506.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.77;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3506,402,0 chrIV 695821 . G A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.66;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3238,360,0 chrIV 696046 . C T 3706.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.70;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:3706,417,0 chrIV 696052 . T C 3512.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.90;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3512,393,0 chrIV 696106 . C G 2962 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=18.28;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:2995,345,0 chrIV 696130 . C T 2922 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=18.73;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:2955,318,0 chrIV 696145 . A G 2723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=3.386;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.298;QD=17.23;ReadPosRankSum=1.688;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:2756,324,0 chrIV 696199 . C T 4337.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.1309;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.79;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4337,468,0 chrIV 696486 . G A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.92;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3682,393,0 chrIV 696499 . T C 2967 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=18.43;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3000,357,0 chrIV 696556 . C T 3767.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.3233;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.28;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3767,411,0 chrIV 696637 . A G 3946.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.3149;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.55;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3946,459,0 chrIV 696745 . T C 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.920;QD=22.63;ReadPosRankSum=1.708;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3281,372,0 chrIV 696847 . G C 4096.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.8311;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.22;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4096,480,0 chrIV 696886 . A G 4447.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.6662;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.81;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4447,501,0 chrIV 696979 . G A 5178.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.75;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5178,559,0 chrIV 697096 . A G 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=184;Dels=0.00;FS=6.061;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-0.731;QD=20.55;ReadPosRankSum=2.918;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:3,180:184:99:3782,438,0 chrIV 697118 . A G 3998.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=19.89;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:3998,459,0 chrIV 697144 . A G 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=210;Dels=0.00;FS=2.673;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.664;QD=18.10;ReadPosRankSum=2.426;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:3802,435,0 chrIV 697201 . G A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.92;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3665,414,0 chrIV 697387 . T C 2984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.564;DP=163;Dels=0.00;FS=12.255;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.717;QD=18.31;ReadPosRankSum=3.699;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:5,157:163:99:3017,351,0 chrIV 697575 . A G 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=3.575;HaplotypeScore=12.8076;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.394;QD=22.19;ReadPosRankSum=1.690;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3662,414,0 chrIV 697612 . T C 2985 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=14.4297;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.38;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3018,345,0 chrIV 697648 . A G 3137 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.2305;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.25;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3170,357,0 chrIV 697693 . A G 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.3858;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=-1.339;QD=18.97;ReadPosRankSum=1.713;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3510,393,0 chrIV 697699 . T G 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=4.629;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=0.789;QD=20.28;ReadPosRankSum=1.694;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3691,426,0 chrIV 697705 . G A 3937.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=21.17;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3937,429,0 chrIV 697759 . G A 2206 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=9.7425;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=19.18;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2239,240,0 chrIV 697891 . G A 1441 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=20.88;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1474,159,0 chrIV 697912 . A T 1340 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=21.27;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1373,156,0 chrIV 698225 . T A 2657 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=21.09;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2690,297,0 chrIV 698243 . T A 2646 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=20.35;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2679,297,0 chrIV 698270 . T C 2432 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=17.37;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2465,288,0 chrIV 698272 . T G 2354 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=17.06;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2387,270,0 chrIV 698347 . A G 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=163;Dels=0.00;FS=3.024;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.460;QD=21.83;ReadPosRankSum=2.419;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3559,402,0 chrIV 698417 . T C 3011 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.51;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3044,345,0 chrIV 698508 . T C 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-0.601;QD=21.59;ReadPosRankSum=1.660;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3142,363,0 chrIV 698525 . C T 3489.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.22;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3489,390,0 chrIV 698668 . C T 4004.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.75;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4004,438,0 chrIV 698758 . C G 6217.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.91;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:6217,711,0 chrIV 699022 . T A 6600.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=17.8704;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.53;SB=-3.073e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:6600,718,0 chrIV 699153 . C T 6739.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.24;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,277:278:99:6739,727,0 chrIV 699202 . T A 5829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=9.2604;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.479;QD=24.49;ReadPosRankSum=1.629;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:1,236:238:99:5829,630,0 chrIV 699280 . T C 4411.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.91;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4411,510,0 chrIV 699810 . C G 3445.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4964;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.75;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3445,402,0 chrIV 699938 . G A 4179.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.96;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4179,465,0 chrIV 700188 . A G 4577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=201;Dels=0.00;FS=3.209;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-1.163;QD=22.77;ReadPosRankSum=1.663;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4577,531,0 chrIV 700210 . A G 3745.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.77;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3745,432,0 chrIV 700250 . G A 4011.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.78;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4011,453,0 chrIV 700377 . G A 4058.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.19;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4058,438,0 chrIV 700440 . C T 3320.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.28;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3320,363,0 chrIV 700614 . A G 2915 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.77;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2948,333,0 chrIV 700773 . T C 2324 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.75;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2357,270,0 chrIV 700855 . G A 2802 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.07;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2835,309,0 chrIV 701064 . A G 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=146;Dels=0.00;FS=3.011;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-1.052;QD=21.32;ReadPosRankSum=2.416;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3146,357,0 chrIV 701178 . G A 1983 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.33;MQ0=0;QD=15.37;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2016,222,0 chrIV 701238 . C G 3047 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.9650;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.61;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3080,348,0 chrIV 701262 . T C 2917 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.54;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2950,336,0 chrIV 701279 . A G 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.332;DP=125;Dels=0.00;FS=12.688;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-0.175;QD=20.10;ReadPosRankSum=3.318;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:4,121:125:99:2545,285,0 chrIV 701448 . T C 1979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=106;Dels=0.00;FS=4.897;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=1.171;QD=18.67;ReadPosRankSum=1.468;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2012,237,0 chrIV 701457 . G A 1999 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=20.19;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2032,216,0 chrIV 701637 . C T 2850 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.75;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2883,321,0 chrIV 701674 . G C 2489 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.64;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2522,288,0 chrIV 701697 . C T 2363 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.69;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2396,264,0 chrIV 701710 . C T 2026 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.0593;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=18.93;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2059,225,0 chrIV 701739 . C T 1714 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=16.97;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1747,192,0 chrIV 701922 . A G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.728;DP=122;Dels=0.00;FS=10.039;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.579;QD=22.54;ReadPosRankSum=2.943;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2783,312,0 chrIV 702480 . A G 3289.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.78;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3289,372,0 chrIV 702519 . G A 3062 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.03;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3095,342,0 chrIV 702555 . T C 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=3.513;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.335;QD=21.38;ReadPosRankSum=1.674;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2620,297,0 chrIV 702967 . A G 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.9189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.097;QD=21.72;ReadPosRankSum=1.703;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,119:123:99:2705,303,0 chrIV 703275 . A G 4509.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.8794;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.89;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4509,525,0 chrIV 703309 . A G 5205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=221;Dels=0.00;FS=6.912;HaplotypeScore=14.4708;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.817;QD=23.55;ReadPosRankSum=2.405;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:5205,591,0 chrIV 703359 . G A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.11;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4489,507,0 chrIV 703386 . G C 4358.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.68;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,196:201:99:4358,486,0 chrIV 703521 . G A 6101.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=17.4770;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.94;SB=-3.030e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:6101,672,0 chrIV 703850 . G A 4953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=230;Dels=0.00;FS=3.512;HaplotypeScore=7.6094;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.643;QD=21.53;ReadPosRankSum=0.628;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:1,228:230:99:4953,543,0 chrIV 703854 . G C 4628.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=6.0321;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=20.48;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:4628,528,0 chrIV 703905 . C T 5440.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=20.2868;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.07;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:5440,624,0 chrIV 704278 . G A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=118.0385;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=0.14;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:6:49,6,0 chrIV 704285 . T A 164.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6253;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=0.326;QD=1.17;ReadPosRankSum=1.707;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:24:197,24,0 chrIV 704345 . T A 2697 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=19.40;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2730,294,0 chrIV 706032 . T C 5383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=243;Dels=0.00;FS=5.088;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;MQRankSum=0.472;QD=22.15;ReadPosRankSum=1.718;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,241:243:99:5383,606,0 chrIV 707014 . A C 4163.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4163,477,0 chrIV 707342 . G A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8210;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.88;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3487,378,0 chrIV 707384 . A G 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.302;QD=23.33;ReadPosRankSum=1.650;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2996,342,0 chrIV 707654 . T C 3866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.776;DP=167;Dels=0.00;FS=5.574;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.533;QD=23.15;ReadPosRankSum=2.946;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:3,163:167:99:3866,441,0 chrIV 707900 . A T 4474.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.48;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4474,504,0 chrIV 707905 . T A 4694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=204;Dels=0.00;FS=3.554;HaplotypeScore=2.7531;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=1.240;QD=23.01;ReadPosRankSum=1.630;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4694,519,0 chrIV 708287 . G A 4054.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.30;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4054,456,0 chrIV 708341 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.2011;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.83;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3687,426,0 chrIV 708639 . G A 5826.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.33;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5826,633,0 chrIV 709011 . T C 4783.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.4178;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.67;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4783,543,0 chrIV 709040 . A G 4564.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=21.84;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4564,519,0 chrIV 709210 . G C 4038.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.4539;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=20.71;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4038,456,0 chrIV 709257 . A G 2597 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=150;Dels=0.00;FS=2.501;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=-1.490;QD=17.31;ReadPosRankSum=2.873;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:2630,300,0 chrIV 709260 . T C 2512 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=141;Dels=0.00;FS=15.501;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=-0.804;QD=17.82;ReadPosRankSum=2.906;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:3,136:141:99:2545,285,0 chrIV 709261 . A C 2421 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;MQRankSum=-0.776;QD=17.05;ReadPosRankSum=2.380;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:2454,279,0 chrIV 709611 . G A 3766.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.28;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3766,432,0 chrIV 709623 . T C 3479.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.88;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3479,405,0 chrIV 709686 . T C 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.936;QD=19.51;ReadPosRankSum=1.711;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3194,363,0 chrIV 709887 . C T 5168.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.93;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5168,553,0 chrIV 709938 . A G 4950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=232;Dels=0.00;FS=3.013;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.000;QD=21.34;ReadPosRankSum=2.397;SB=-2.743e+03 GT:AD:DP:GQ:PL 1/1:2,230:232:99:4950,570,0 chrIV 710109 . G A 3735.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.64;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3735,420,0 chrIV 710130 . C T 3862.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.4600;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.82;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3862,420,0 chrIV 710277 . A G 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=138;Dels=0.00;FS=3.659;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=1.151;QD=21.88;ReadPosRankSum=1.707;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3053,357,0 chrIV 710371 . A G 4177.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.0879;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.98;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4177,471,0 chrIV 710478 . A G 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=3.040;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=0.756;QD=20.89;ReadPosRankSum=1.686;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3146,360,0 chrIV 710492 . G A 3024 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.86;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3057,345,0 chrIV 710715 . C T 3397.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.26;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3397,369,0 chrIV 710850 . A G 2183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.371;QD=19.32;ReadPosRankSum=1.701;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2216,252,0 chrIV 710853 . C T 2212 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=19.58;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2245,249,0 chrIV 710996 . T C 2516 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2549,294,0 chrIV 711174 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.45;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2871,312,0 chrIV 711312 . T C 2654 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.11;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2687,306,0 chrIV 711314 . T C 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.209;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=1.008;QD=20.38;ReadPosRankSum=1.629;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2764,312,0 chrIV 711352 . T A 2187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=3.780;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.518;QD=18.69;ReadPosRankSum=1.703;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2220,246,0 chrIV 711426 . T C 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=117;Dels=0.00;FS=8.092;HaplotypeScore=8.9184;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.159;QD=20.74;ReadPosRankSum=2.386;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2459,279,0 chrIV 711528 . A C 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.849;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-0.819;QD=22.74;ReadPosRankSum=1.709;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3411,396,0 chrIV 711759 . T C 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=134;Dels=0.00;FS=14.121;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.180;QD=22.17;ReadPosRankSum=2.948;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:3004,339,0 chrIV 711909 . C G 1778 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.20;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1811,204,0 chrIV 711924 . A G 1931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=98;Dels=0.00;FS=3.847;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.054;QD=19.70;ReadPosRankSum=1.661;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1964,225,0 chrIV 711956 . G A 2440 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.4341;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.03;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2473,267,0 chrIV 712092 . C T 2690 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.23;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2723,306,0 chrIV 712122 . G A 2932 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.27;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2965,327,0 chrIV 712428 . G A 4178.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.43;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4178,450,0 chrIV 712473 . G A 3515.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.6949;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.97;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3515,384,0 chrIV 712689 . C A 2913 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.5214;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.58;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2946,342,0 chrIV 712857 . A G 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=123;Dels=0.00;FS=2.939;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;MQRankSum=-0.213;QD=22.66;ReadPosRankSum=2.328;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:2,119:123:99:2820,318,0 chrIV 713004 . C T 2082 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=18.76;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2115,225,0 chrIV 713009 . A G 1791 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;MQRankSum=-0.238;QD=17.39;ReadPosRankSum=1.698;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:1824,207,0 chrIV 713011 . G C 1763 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=0;QD=17.46;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1796,198,0 chrIV 713074 . G T 1635 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.35;MQ0=0;QD=15.14;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1668,186,0 chrIV 713084 . G T 1516 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.39;MQ0=0;QD=14.30;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1549,168,0 chrIV 713108 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=39.79;MQ0=0;QD=14.97;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1635,177,0 chrIV 713109 . C T 1550 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=39.55;MQ0=0;QD=14.62;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1583,180,0 chrIV 713130 . C T 1847 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=16.35;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1880,210,0 chrIV 713166 . C T 1774 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=18.10;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1807,201,0 chrIV 713335 . T C 2665 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=19.17;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2698,306,0 chrIV 713336 . T A 2774 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=19.96;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2807,312,0 chrIV 713505 . G A 2755 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=18.25;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2788,321,0 chrIV 713520 . A G 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=168;Dels=0.00;FS=3.090;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=0.808;QD=18.49;ReadPosRankSum=1.690;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:1,164:168:99:3140,360,0 chrIV 713623 . G A 4137.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.6423;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.05;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4137,450,0 chrIV 713871 . C T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3434,384,0 chrIV 714483 . T C 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.013;QD=21.25;ReadPosRankSum=1.706;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2923,327,0 chrIV 714588 . A G 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=165;Dels=0.00;FS=6.998;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.573;QD=21.44;ReadPosRankSum=2.360;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3538,411,0 chrIV 714612 . A T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.09;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3424,387,0 chrIV 714714 . C T 5149.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.1889;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.06;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5149,576,0 chrIV 714798 . T C 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=187;Dels=0.00;FS=6.234;HaplotypeScore=19.9433;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.218;QD=18.49;ReadPosRankSum=2.423;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:3458,402,0 chrIV 714933 . T C 5633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.430;DP=258;Dels=0.00;FS=3.008;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-0.272;QD=21.83;ReadPosRankSum=2.421;SB=-3.184e+03 GT:AD:DP:GQ:PL 1/1:2,255:258:99:5633,627,0 chrIV 714949 . G A 5113.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=7.5027;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.87;SB=-2.991e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5113,555,0 chrIV 715026 . T C 3423.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.34;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3423,396,0 chrIV 715349 . G A 2601 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=21.67;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2634,285,0 chrIV 715352 . T C 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=121;Dels=0.00;FS=3.979;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=0.375;QD=20.74;ReadPosRankSum=1.703;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2543,291,0 chrIV 715627 . C T 2256 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.14;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2289,255,0 chrIV 715629 . A G 2187 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.35;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2220,252,0 chrIV 715691 . G A 2472 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.7601;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.26;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2505,276,0 chrIV 715715 . T A 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=136;Dels=0.00;FS=3.142;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.284;QD=23.36;ReadPosRankSum=1.706;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3210,348,0 chrIV 715933 . C T 3766.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.3451;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.69;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3766,414,0 chrIV 716020 . C T 3442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=157;Dels=0.00;FS=3.634;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.011;QD=21.92;ReadPosRankSum=-0.982;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3442,375,0 chrIV 716118 . T C 4306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.234;DP=195;Dels=0.00;FS=8.442;HaplotypeScore=15.7914;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.909;QD=22.08;ReadPosRankSum=3.360;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:4,189:195:99:4306,498,0 chrIV 716179 . T C 3771.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.07;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:3771,435,0 chrIV 716291 . T C 4487.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.8273;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.89;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4487,507,0 chrIV 716374 . A G 4165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=186;Dels=0.00;FS=7.251;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=0.178;QD=22.39;ReadPosRankSum=2.397;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4165,477,0 chrIV 716407 . A T 4525.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.74;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4525,504,0 chrIV 716464 . T C 4559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=205;Dels=0.00;FS=2.897;HaplotypeScore=11.2310;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=1.703;QD=22.24;ReadPosRankSum=2.401;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:4559,525,0 chrIV 716510 . A G 3955.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.0810;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=19.87;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3955,462,0 chrIV 716521 . A G 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=207;Dels=0.00;FS=8.033;HaplotypeScore=10.7060;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=1.389;QD=18.85;ReadPosRankSum=2.414;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:2,204:207:99:3902,450,0 chrIV 716641 . A G 4198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-0.136;QD=20.58;ReadPosRankSum=1.698;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4198,480,0 chrIV 716654 . G T 4259.01 SnpCluster AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=20.88;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4259,459,0 chrIV 716660 . C T 4123.01 SnpCluster AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=20.41;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4123,465,0 chrIV 716662 . G A 4243.01 SnpCluster AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=20.80;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4243,462,0 chrIV 716832 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.58;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3244,348,0 chrIV 716869 . G A 2968 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.15;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3001,330,0 chrIV 716915 . C T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.86;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3703,408,0 chrIV 717012 . A T 2938 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.95;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2971,327,0 chrIV 717247 . T C 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=93;Dels=0.00;FS=6.163;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-0.225;QD=21.55;ReadPosRankSum=2.370;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2037,231,0 chrIV 717264 . T C 1973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.622;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-1.364;QD=20.55;ReadPosRankSum=1.364;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,93:96:99:2006,228,0 chrIV 717285 . A G 1839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=3.250;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.019;QD=19.77;ReadPosRankSum=1.695;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1872,219,0 chrIV 717372 . T C 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.188;QD=18.33;ReadPosRankSum=1.694;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1738,198,0 chrIV 717377 . G C 1732 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=19.24;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1765,204,0 chrIV 717532 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=22.34;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2580,282,0 chrIV 717546 . C T 2694 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.3009;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;QD=23.63;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2727,300,0 chrIV 717624 . A G 2824 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;QD=21.23;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2857,333,0 chrIV 717634 . C A 2860 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=21.83;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2893,315,0 chrIV 717729 . G C 2267 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=20.80;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2300,264,0 chrIV 717736 . T C 2231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=107;Dels=0.00;FS=3.365;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;MQRankSum=-0.340;QD=20.85;ReadPosRankSum=1.698;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,101:107:99:2264,258,0 chrIV 717744 . G A 2303 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=21.32;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2336,258,0 chrIV 717791 . A G 1700 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=35.15;MQ0=0;QD=14.66;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1733,201,0 chrIV 717813 . C T 1625 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.14;MQ0=0;QD=15.33;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1658,177,0 chrIV 717815 . C T 1510 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.438;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.14;MQ0=0;MQRankSum=-0.033;QD=14.25;ReadPosRankSum=-1.569;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1543,152,0 chrIV 717817 . G A 1654 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;QD=15.31;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1687,183,0 chrIV 717834 . C T 1792 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.43;MQ0=0;QD=12.71;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1825,210,0 chrIV 717840 . G A 1851 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9375;MLEAC=2;MLEAF=1.00;MQ=36.54;MQ0=0;QD=12.94;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:1884,210,0 chrIV 717895 . C T 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=4.510;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=0.678;QD=19.43;ReadPosRankSum=1.194;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3161,348,0 chrIV 717936 . G A 3537.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=25.26;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3537,384,0 chrIV 717987 . T C 3040 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4586;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=22.69;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3073,351,0 chrIV 718146 . C T 3749.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.67;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3749,417,0 chrIV 718187 . C A 3924.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.07;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3924,420,0 chrIV 718242 . T A 3546.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.44;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3546,393,0 chrIV 718259 . G A 3284.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.89;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3284,357,0 chrIV 718303 . T C 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=5.119;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.799;QD=21.05;ReadPosRankSum=1.626;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2769,315,0 chrIV 718331 . A C 2671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1437;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-1.453;QD=21.37;ReadPosRankSum=1.676;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2704,309,0 chrIV 718416 . C A 2891 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.31;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2924,327,0 chrIV 718455 . A T 2486 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.81;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2519,285,0 chrIV 718640 . T G 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=108;Dels=0.00;FS=5.616;HaplotypeScore=10.5572;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.598;QD=24.58;ReadPosRankSum=2.935;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2688,303,0 chrIV 718760 . G A 2910 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=12.6476;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.56;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2943,321,0 chrIV 718867 . A G 3985.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.3104;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.30;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3985,459,0 chrIV 718958 . C T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=22.83;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3252,351,0 chrIV 718968 . G A 3202 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.21;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3235,348,0 chrIV 719032 . T C 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=193;Dels=0.00;FS=11.768;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.047;QD=20.96;ReadPosRankSum=2.932;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:3,188:193:99:4046,462,0 chrIV 719116 . C T 3455.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.1976;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.03;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3455,384,0 chrIV 719391 . T C 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=137;Dels=0.00;FS=3.042;HaplotypeScore=12.7461;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.745;QD=22.73;ReadPosRankSum=2.377;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3147,357,0 chrIV 719513 . T C 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.947;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.9236;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.514;QD=23.83;ReadPosRankSum=1.705;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3107,326,0 chrIV 719745 . A G 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=124;Dels=0.00;FS=3.041;HaplotypeScore=9.8466;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.724;QD=22.19;ReadPosRankSum=2.370;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2784,318,0 chrIV 719860 . C G 3628.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.41;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3628,417,0 chrIV 720029 . T G 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.297;QD=22.55;ReadPosRankSum=1.335;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2920,327,0 chrIV 720061 . A G 2771 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.17;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2804,318,0 chrIV 720086 . G C 2873 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.12;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,130:136:99:2906,330,0 chrIV 720439 . T A 2261 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.74;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2294,255,0 chrIV 720440 . C T 2259 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.72;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2292,255,0 chrIV 720596 . T G 2323 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.92;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2356,267,0 chrIV 720993 . C G 1434 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1467,165,0 chrIV 721283 . A G 4117.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.13;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4117,468,0 chrIV 722085 . A G 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.992;QD=21.49;ReadPosRankSum=1.703;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2547,291,0 chrIV 722776 . A G 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.292;QD=19.68;ReadPosRankSum=1.635;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3503,405,0 chrIV 722810 . C G 3291.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.4128;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.83;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3291,387,0 chrIV 723350 . G A 6881.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.86;SB=-3.249e+03 GT:AD:DP:GQ:PL 1/1:0,299:301:99:6881,748,0 chrIV 723895 . G A 3485.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.6425;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=19.15;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3485,405,0 chrIV 723901 . T C 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=184;Dels=0.00;FS=2.494;HaplotypeScore=4.4747;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;MQRankSum=-0.786;QD=18.49;ReadPosRankSum=2.962;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:3,180:184:99:3402,387,0 chrIV 723910 . G A 3099 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.6841;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=17.71;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3132,339,0 chrIV 724081 . G A 6429.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=15.2609;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.72;SB=-3.481e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:6429,697,0 chrIV 725035 . C G 5244.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=12.1914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:5244,603,0 chrIV 725095 . G A 5168.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.3473;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:5168,573,0 chrIV 725461 . T C 4656.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.5520;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.28;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4656,546,0 chrIV 725814 . T C 3207 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.58;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3240,366,0 chrIV 726400 . T C 2740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.116;DP=128;Dels=0.00;FS=9.181;HaplotypeScore=7.4343;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.226;QD=21.41;ReadPosRankSum=2.458;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:4,124:128:99:2773,312,0 chrIV 727318 . T A 2917 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.11;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2950,324,0 chrIV 727778 . A G 3971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.796;DP=205;Dels=0.00;FS=17.693;HaplotypeScore=194.8460;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-1.052;QD=19.37;ReadPosRankSum=3.796;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:5,198:205:99:3971,453,0 chrIV 728918 . C T 2500 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2533,276,0 chrIV 728966 . A C 1844 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.49;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1877,213,0 chrIV 730523 . T A 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=137;Dels=0.00;FS=4.491;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.604;QD=21.85;ReadPosRankSum=1.681;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3026,336,0 chrIV 730704 . G A 2046 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2079,234,0 chrIV 731285 . C T 3047 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.57;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3080,339,0 chrIV 731928 . T C 2870 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.92;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2903,327,0 chrIV 732272 . T C 2505 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.53;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2538,297,0 chrIV 732354 . G A 2994 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.39;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3027,336,0 chrIV 732401 . G A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.35;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3287,360,0 chrIV 733498 . T A 2277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=16.6323;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=2.090;QD=18.22;ReadPosRankSum=-0.310;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2310,236,0 chrIV 733663 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3158;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.03;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3364,372,0 chrIV 733784 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.264;DP=154;Dels=0.00;FS=12.567;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.344;QD=21.43;ReadPosRankSum=3.379;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:4,149:154:99:3300,366,0 chrIV 734087 . A G 2265 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2298,264,0 chrIV 735201 . C T 3783.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3783,411,0 chrIV 735360 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.3973;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.824;QD=23.14;ReadPosRankSum=1.708;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3355,381,0 chrIV 735567 . A T 2684 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.75;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2717,300,0 chrIV 736511 . G A 3542.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.6224;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3542,381,0 chrIV 736692 . C T 3866.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.01;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3866,426,0 chrIV 738672 . A G 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=110;Dels=0.00;FS=5.323;HaplotypeScore=8.3356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.556;QD=21.78;ReadPosRankSum=1.700;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2429,276,0 chrIV 738771 . A G 3120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.234;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.6003;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.166;QD=21.08;ReadPosRankSum=-0.498;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3153,351,0 chrIV 739056 . G A 3182 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3215,357,0 chrIV 739910 . G T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.11;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3537,387,0 chrIV 740330 . G C 2431 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2464,276,0 chrIV 741793 . A G 1428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3482;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.427;QD=20.70;ReadPosRankSum=1.632;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1461,165,0 chrIV 743491 . C T 4491.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.51;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4491,510,0 chrIV 743850 . T C 2897 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.28;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2930,330,0 chrIV 744093 . T C 2042 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.42;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2075,234,0 chrIV 744329 . A T 2921 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2954,324,0 chrIV 744524 . C T 4765.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.7673;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.69;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4765,525,0 chrIV 745067 . G A 3055 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.63;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3088,345,0 chrIV 745766 . G A 5181.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.44;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5181,556,0 chrIV 745916 . C T 3533.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3533,402,0 chrIV 745998 . A T 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.122;DP=130;Dels=0.00;FS=15.007;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.760;QD=22.98;ReadPosRankSum=4.122;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:6,124:130:99:3020,327,0 chrIV 746034 . C T 3321.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3321,360,0 chrIV 746289 . G C 1976 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.20;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2009,231,0 chrIV 746866 . T G 4250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=194;Dels=0.00;FS=3.029;HaplotypeScore=14.2081;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=0.867;QD=21.91;ReadPosRankSum=2.386;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4250,489,0 chrIV 747029 . T C 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=203;Dels=0.00;FS=6.060;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=1.765;QD=17.77;ReadPosRankSum=2.955;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:3,198:203:99:3607,405,0 chrIV 747034 . T C 3364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=192;Dels=0.00;FS=3.002;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;MQRankSum=1.247;QD=17.52;ReadPosRankSum=2.398;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:2,188:192:99:3364,387,0 chrIV 747106 . A G 1197.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-11.992;DP=315;Dels=0.00;FS=9.660;HaplotypeScore=148.5092;MLEAC=1;MLEAF=0.500;MQ=38.55;MQ0=0;MQRankSum=-5.300;QD=3.80;ReadPosRankSum=-5.731;SB=-1.349e+03 GT:AD:DP:GQ:PL 0/1:169,144:315:99:1227,0,958 chrIV 747123 . G A 787.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.760;DP=293;Dels=0.00;FS=4.956;HaplotypeScore=106.3950;MLEAC=1;MLEAF=0.500;MQ=41.32;MQ0=0;MQRankSum=-6.362;QD=2.69;ReadPosRankSum=-11.732;SB=-9.370e+02 GT:AD:DP:GQ:PL 0/1:192,101:293:99:817,0,1567 chrIV 747124 . T C 697.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;DP=295;Dels=0.00;FS=4.968;HaplotypeScore=106.3950;MLEAC=1;MLEAF=0.500;MQ=41.47;MQ0=0;MQRankSum=-6.484;QD=2.36;ReadPosRankSum=-12.051;SB=-8.750e+02 GT:AD:DP:GQ:PL 0/1:192,101:295:99:727,0,1631 chrIV 747279 . A G 3750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=176;Dels=0.00;FS=2.954;HaplotypeScore=14.4331;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;MQRankSum=0.705;QD=21.31;ReadPosRankSum=2.422;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3750,432,0 chrIV 747526 . G A 779.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.809;DP=216;Dels=0.00;FS=38.388;HaplotypeScore=548.5450;MLEAC=1;MLEAF=0.500;MQ=56.36;MQ0=0;MQRankSum=3.255;QD=3.61;ReadPosRankSum=-4.164;SB=-9.301e+01 GT:AD:DP:GQ:PL 0/1:151,63:216:99:809,0,383 chrIV 747532 . A G 303.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.509;DP=212;Dels=0.03;FS=59.984;HaplotypeScore=212.4019;MLEAC=1;MLEAF=0.500;MQ=56.28;MQ0=0;MQRankSum=2.271;QD=1.43;ReadPosRankSum=-4.174;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:158,45:205:99:333,0,1867 chrIV 747535 . G A 354.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.800;DP=209;Dels=0.00;FS=52.453;HaplotypeScore=45.7233;MLEAC=1;MLEAF=0.500;MQ=56.23;MQ0=0;MQRankSum=3.743;QD=1.69;ReadPosRankSum=-4.047;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:168,40:209:99:384,0,1843 chrIV 749663 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.02;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3141,345,0 chrIV 750047 . A G 2751 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.01;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2784,327,0 chrIV 750288 . G A 2579 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.63;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2612,288,0 chrIV 752950 . T A 2976 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.67;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3009,336,0 chrIV 753357 . A G 1181 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1214,138,0 chrIV 753858 . G A 4587.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.7093;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.40;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4587,510,0 chrIV 754044 . G T 4571.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.46;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4571,510,0 chrIV 754071 . C G 3933.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.9792;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.48;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3933,453,0 chrIV 754425 . G A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2753;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.05;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3527,396,0 chrIV 755101 . T C 2396 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2429,282,0 chrIV 755458 . C G 3990.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.8077;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.34;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3990,459,0 chrIV 755547 . G A 4759.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=18.2979;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.68;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4759,519,0 chrIV 756291 . C T 2461 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.00;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2494,279,0 chrIV 757409 . A T 1331 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.87;MQ0=0;QD=21.82;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1364,150,0 chrIV 757412 . G A 1224 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.86;MQ0=0;QD=20.75;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1257,144,0 chrIV 757414 . A C 1184 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.86;MQ0=0;MQRankSum=-1.615;QD=20.07;ReadPosRankSum=1.674;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1217,141,0 chrIV 757424 . T C 1184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=65;Dels=0.00;FS=4.840;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.46;MQ0=1;MQRankSum=1.624;QD=18.22;ReadPosRankSum=1.407;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1217,144,0 chrIV 757430 . T C 1152 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.335;DP=65;Dels=0.00;FS=5.549;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=4;MQRankSum=1.562;QD=17.72;ReadPosRankSum=0.937;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1185,122,0 chrIV 757496 . G A 92.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.516;DP=138;Dels=0.00;FS=173.203;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=23.26;MQ0=9;MQRankSum=-0.053;QD=0.67;ReadPosRankSum=-0.395;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,42:138:99:122,0,739 chrIV 757506 . A G 971 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=165;Dels=0.00;FS=8.893;HaplotypeScore=12.7222;MLEAC=2;MLEAF=1.00;MQ=22.68;MQ0=10;MQRankSum=-1.023;QD=5.88;ReadPosRankSum=2.418;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:2,163:165:99:1004,120,0 chrIV 757523 . G A 340.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.060;DP=216;Dels=0.00;FS=205.453;HaplotypeScore=32.7577;MLEAC=1;MLEAF=0.500;MQ=22.06;MQ0=6;MQRankSum=1.953;QD=1.57;ReadPosRankSum=-0.194;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,126:216:99:370,0,344 chrIV 757532 . C T 439.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.810;DP=242;Dels=0.00;FS=350.438;HaplotypeScore=34.3927;MLEAC=1;MLEAF=0.500;MQ=22.65;MQ0=3;MQRankSum=2.474;QD=1.81;ReadPosRankSum=-1.988;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:52,190:242:99:469,0,267 chrIV 757538 . A G 492.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DP=271;Dels=0.00;FS=352.806;HaplotypeScore=7.5714;MLEAC=1;MLEAF=0.500;MQ=22.67;MQ0=2;MQRankSum=3.743;QD=1.82;ReadPosRankSum=-1.170;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:48,223:271:99:522,0,172 chrIV 757544 . C T 867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=75.6999;MLEAC=2;MLEAF=1.00;MQ=22.48;MQ0=2;MQRankSum=-0.890;QD=3.00;ReadPosRankSum=0.024;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:1,286:289:99:900,108,0 chrIV 757550 . G T 391.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.581;DP=304;Dels=0.00;FS=34.925;HaplotypeScore=91.3064;MLEAC=1;MLEAF=0.500;MQ=22.56;MQ0=2;MQRankSum=-1.636;QD=1.29;ReadPosRankSum=-4.819;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:80,224:304:99:421,0,191 chrIV 757558 . A G 145.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.543;DP=295;Dels=0.00;FS=27.331;HaplotypeScore=144.1158;MLEAC=1;MLEAF=0.500;MQ=22.57;MQ0=2;MQRankSum=-2.577;QD=0.49;ReadPosRankSum=5.583;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:225,70:295:99:175,0,393 chrIV 757564 . C A 107.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.692;DP=281;Dels=0.00;FS=18.129;HaplotypeScore=75.9211;MLEAC=1;MLEAF=0.500;MQ=22.74;MQ0=1;MQRankSum=-2.913;QD=0.38;ReadPosRankSum=5.916;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:215,66:281:99:137,0,345 chrIV 757578 . G C 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.343;DP=266;Dels=0.00;FS=9.413;HaplotypeScore=209.2349;MLEAC=1;MLEAF=0.500;MQ=23.40;MQ0=1;MQRankSum=0.982;QD=0.47;ReadPosRankSum=-13.060;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:162,104:266:99:156,0,164 chrIV 757616 . T C 87.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=16.7486;MLEAC=2;MLEAF=1.00;MQ=22.83;MQ0=1;MQRankSum=0.192;QD=0.96;ReadPosRankSum=-0.423;SB=-8.727e+01 GT:AD:DP:GQ:PL 1/1:1,90:91:15:120,15,0 chrIV 757622 . T C 40.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.167;DP=80;Dels=0.00;FS=2.616;HaplotypeScore=5.8816;MLEAC=2;MLEAF=1.00;MQ=22.28;MQ0=1;MQRankSum=1.082;QD=0.51;ReadPosRankSum=0.294;SB=2.03 GT:AD:DP:GQ:PL 1/1:52,28:80:9:73,9,0 chrIV 757631 . G T 42.97 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=15.7347;MLEAC=2;MLEAF=1.00;MQ=20.85;MQ0=1;QD=0.67;SB=-6.598e+01 GT:AD:DP:GQ:PL 1/1:0,61:64:9:75,9,0 chrIV 757635 . A G 38.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.066;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.8978;MLEAC=2;MLEAF=1.00;MQ=20.56;MQ0=2;MQRankSum=-3.633;QD=0.55;ReadPosRankSum=3.753;SB=-6.297e+01 GT:AD:DP:GQ:PL 1/1:15,56:71:9:71,9,0 chrIV 757644 . T C 116.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.6965;MLEAC=2;MLEAF=1.00;MQ=19.83;MQ0=5;MQRankSum=-2.199;QD=1.26;ReadPosRankSum=-0.375;SB=-6.514e+01 GT:AD:DP:GQ:PL 1/1:7,85:92:18:149,18,0 chrIV 757646 . A G 111.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=19.96;MQ0=5;MQRankSum=-1.431;QD=1.19;ReadPosRankSum=-1.384;SB=-6.514e+01 GT:AD:DP:GQ:PL 1/1:6,86:93:18:144,18,0 chrIV 757676 . C A 151.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.726;DP=144;Dels=0.00;FS=37.195;HaplotypeScore=42.1732;MLEAC=1;MLEAF=0.500;MQ=24.68;MQ0=12;MQRankSum=-2.626;QD=1.05;ReadPosRankSum=5.375;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,92:144:99:181,0,399 chrIV 757688 . G A 490.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.835;DP=199;Dels=0.00;FS=1.493;HaplotypeScore=19.6167;MLEAC=1;MLEAF=0.500;MQ=27.87;MQ0=12;MQRankSum=-2.631;QD=2.46;ReadPosRankSum=2.521;SB=-4.230e+02 GT:AD:DP:GQ:PL 0/1:77,117:199:99:520,0,793 chrIV 757698 . A G 3360.01 filter AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=77.9794;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=12;QD=11.16;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:2,298:301:99:3360,407,0 chrIV 757715 . G A 69.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.402;DP=538;Dels=0.00;FS=58.329;HaplotypeScore=93.2415;MLEAC=1;MLEAF=0.500;MQ=30.65;MQ0=12;MQRankSum=-5.471;QD=0.13;ReadPosRankSum=-3.669;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:450,86:538:99:99,0,6401 chrIV 757724 . C T 4479.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.850;DP=613;Dels=0.00;FS=194.852;HaplotypeScore=90.3932;MLEAC=1;MLEAF=0.500;MQ=31.50;MQ0=12;MQRankSum=-8.629;QD=7.31;ReadPosRankSum=-0.616;SB=-1.514e+03 GT:AD:DP:GQ:PL 0/1:223,390:613:99:4479,0,2860 chrIV 757730 . A G 4751.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.583;DP=637;Dels=0.00;FS=226.748;HaplotypeScore=22.4463;MLEAC=1;MLEAF=0.500;MQ=31.80;MQ0=9;MQRankSum=-8.835;QD=7.46;ReadPosRankSum=1.466;SB=-1.371e+03 GT:AD:DP:GQ:PL 0/1:238,397:637:99:4751,0,3402 chrIV 757742 . G T 8774.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.698;DP=681;Dels=0.00;FS=30.330;HaplotypeScore=41.8440;MLEAC=1;MLEAF=0.500;MQ=32.25;MQ0=7;MQRankSum=-0.303;QD=12.88;ReadPosRankSum=1.678;SB=-5.241e+03 GT:AD:DP:GQ:PL 0/1:100,581:681:53:8774,0,53 chrIV 757793 . G A 323.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.182;DP=570;Dels=0.02;FS=35.584;HaplotypeScore=161.3890;MLEAC=1;MLEAF=0.500;MQ=31.37;MQ0=1;MQRankSum=3.205;QD=0.57;ReadPosRankSum=0.214;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:485,75:560:99:353,0,5942 chrIV 757814 . T A 2472.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;DP=396;Dels=0.00;FS=1.208;HaplotypeScore=329.0031;MLEAC=1;MLEAF=0.500;MQ=27.66;MQ0=1;MQRankSum=-4.715;QD=6.24;ReadPosRankSum=7.369;SB=-9.390e+02 GT:AD:DP:GQ:PL 0/1:72,323:396:99:2502,0,290 chrIV 757817 . A G 1360.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.492;DP=370;Dels=0.00;FS=0.476;HaplotypeScore=311.2469;MLEAC=1;MLEAF=0.500;MQ=27.27;MQ0=1;MQRankSum=-6.051;QD=3.68;ReadPosRankSum=8.204;SB=-8.470e+02 GT:AD:DP:GQ:PL 0/1:140,230:370:99:1390,0,1096 chrIV 757819 . C A 1601.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=10.930;DP=352;Dels=0.00;FS=23.123;HaplotypeScore=298.9219;MLEAC=1;MLEAF=0.500;MQ=26.66;MQ0=1;MQRankSum=-5.798;QD=4.55;ReadPosRankSum=6.727;SB=-1.001e+03 GT:AD:DP:GQ:PL 0/1:119,233:352:99:1631,0,824 chrIV 757824 . T C 893.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-9.612;DP=347;Dels=0.00;FS=144.728;HaplotypeScore=268.4970;MLEAC=1;MLEAF=0.500;MQ=25.84;MQ0=1;MQRankSum=3.485;QD=2.57;ReadPosRankSum=-5.609;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:137,210:347:99:923,0,1316 chrIV 757829 . T C 484.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;DP=358;Dels=0.00;FS=134.570;HaplotypeScore=161.9654;MLEAC=1;MLEAF=0.500;MQ=25.40;MQ0=1;MQRankSum=0.556;QD=1.35;ReadPosRankSum=-2.165;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:154,203:358:99:514,0,1453 chrIV 757833 . C T 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.602;DP=367;Dels=0.00;FS=82.811;HaplotypeScore=94.9354;MLEAC=1;MLEAF=0.500;MQ=24.42;MQ0=1;MQRankSum=0.611;QD=0.10;ReadPosRankSum=-8.286;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:320,46:367:66:66,0,1886 chrIV 757901 . G A 844.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.072;DP=442;Dels=0.00;FS=2.231;HaplotypeScore=20.7602;MLEAC=1;MLEAF=0.500;MQ=27.72;MQ0=19;MQRankSum=-0.041;QD=1.91;ReadPosRankSum=-4.981;SB=-6.000e+02 GT:AD:DP:GQ:PL 0/1:297,143:442:99:874,0,3640 chrIV 757928 . G A 1217.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.325;DP=451;Dels=0.00;FS=7.709;HaplotypeScore=65.2777;MLEAC=1;MLEAF=0.500;MQ=30.86;MQ0=20;MQRankSum=-0.428;QD=2.70;ReadPosRankSum=-2.911;SB=-8.130e+02 GT:AD:DP:GQ:PL 0/1:298,153:451:99:1247,0,3798 chrIV 757943 . A G 5576.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.464;DP=390;Dels=0.00;FS=9.656;HaplotypeScore=13.2581;MLEAC=2;MLEAF=1.00;MQ=31.44;MQ0=17;MQRankSum=-0.368;QD=14.30;ReadPosRankSum=4.510;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:9,379:389:99:5576,641,0 chrIV 757955 . G T 523.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.893;DP=378;Dels=0.00;FS=111.943;HaplotypeScore=64.8913;MLEAC=1;MLEAF=0.500;MQ=31.35;MQ0=11;MQRankSum=-7.877;QD=1.38;ReadPosRankSum=-0.441;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:246,127:377:99:553,0,3563 chrIV 757961 . T C 5733.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.256;DP=400;Dels=0.00;FS=78.882;HaplotypeScore=75.1092;MLEAC=2;MLEAF=1.00;MQ=32.15;MQ0=4;MQRankSum=-0.947;QD=14.33;ReadPosRankSum=6.292;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:14,385:400:99:5733,677,0 chrIV 757963 . G A 791.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.913;DP=413;Dels=0.00;FS=43.058;HaplotypeScore=86.1507;MLEAC=1;MLEAF=0.500;MQ=32.18;MQ0=3;MQRankSum=-9.952;QD=1.92;ReadPosRankSum=-1.379;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:220,178:412:99:821,0,3536 chrIV 757969 . A C 1735.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.080;DP=477;Dels=0.00;FS=4.727;HaplotypeScore=86.4919;MLEAC=1;MLEAF=0.500;MQ=32.54;MQ0=2;MQRankSum=-8.935;QD=3.64;ReadPosRankSum=-3.923;SB=-6.240e+02 GT:AD:DP:GQ:PL 0/1:222,246:477:99:1765,0,3650 chrIV 758006 . G A 1149.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.548;DP=721;Dels=0.01;FS=0.322;HaplotypeScore=121.3617;MLEAC=1;MLEAF=0.500;MQ=33.87;MQ0=5;MQRankSum=0.696;QD=1.59;ReadPosRankSum=-0.944;SB=-5.510e+02 GT:AD:DP:GQ:PL 0/1:545,163:711:99:1179,0,8704 chrIV 758030 . A G 9256.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.927;DP=705;Dels=0.00;FS=14.211;HaplotypeScore=36.2308;MLEAC=1;MLEAF=0.500;MQ=32.36;MQ0=6;MQRankSum=3.074;QD=13.13;ReadPosRankSum=2.909;SB=-5.156e+03 GT:AD:DP:GQ:PL 0/1:130,575:705:99:9256,0,455 chrIV 758032 . C A 9699.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.073;DP=705;Dels=0.00;FS=17.769;HaplotypeScore=57.4385;MLEAC=1;MLEAF=0.500;MQ=32.31;MQ0=7;MQRankSum=3.228;QD=13.76;ReadPosRankSum=2.966;SB=-5.252e+03 GT:AD:DP:GQ:PL 0/1:128,574:705:99:9699,0,492 chrIV 758046 . C T 3133.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.955;DP=691;Dels=0.00;FS=0.286;HaplotypeScore=209.2425;MLEAC=1;MLEAF=0.500;MQ=32.36;MQ0=8;MQRankSum=2.161;QD=4.53;ReadPosRankSum=6.836;SB=-1.723e+03 GT:AD:DP:GQ:PL 0/1:449,242:691:99:3163,0,5797 chrIV 758048 . C T 1014.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.949;DP=677;Dels=0.00;FS=18.239;HaplotypeScore=232.2347;MLEAC=1;MLEAF=0.500;MQ=32.52;MQ0=8;MQRankSum=-8.116;QD=1.50;ReadPosRankSum=-2.740;SB=-5.580e+02 GT:AD:DP:GQ:PL 0/1:491,186:677:99:1044,0,8232 chrIV 758070 . T C 1992.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.498;DP=463;Dels=0.00;FS=8.527;HaplotypeScore=123.4938;MLEAC=1;MLEAF=0.500;MQ=31.40;MQ0=10;MQRankSum=-2.380;QD=4.30;ReadPosRankSum=-6.208;SB=-1.409e+03 GT:AD:DP:GQ:PL 0/1:207,241:463:99:2022,0,2724 chrIV 758072 . A G 1633.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.844;DP=421;Dels=0.00;FS=1.651;HaplotypeScore=29.2812;MLEAC=1;MLEAF=0.500;MQ=31.22;MQ0=10;MQRankSum=-2.306;QD=3.88;ReadPosRankSum=-0.954;SB=-1.181e+03 GT:AD:DP:GQ:PL 0/1:226,195:421:99:1663,0,2636 chrIV 758096 . A C 1713 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.047;DP=206;Dels=0.00;FS=24.004;HaplotypeScore=51.1198;MLEAC=2;MLEAF=1.00;MQ=23.65;MQ0=10;MQRankSum=-2.004;QD=8.32;ReadPosRankSum=5.722;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:17,189:206:48:1746,48,0 chrIV 758097 . C T 85.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.727;DP=206;Dels=0.00;FS=27.810;HaplotypeScore=47.9651;MLEAC=1;MLEAF=0.500;MQ=22.95;MQ0=9;MQRankSum=2.672;QD=0.41;ReadPosRankSum=4.181;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:172,31:206:99:115,0,1515 chrIV 758102 . C A 211.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.032;DP=189;Dels=0.00;FS=49.096;HaplotypeScore=40.3482;MLEAC=1;MLEAF=0.500;MQ=22.76;MQ0=8;MQRankSum=-0.845;QD=1.12;ReadPosRankSum=-0.814;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:135,54:189:99:241,0,1240 chrIV 758114 . G A 559.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.911;DP=173;Dels=0.00;FS=55.228;HaplotypeScore=9.8698;MLEAC=1;MLEAF=0.500;MQ=23.46;MQ0=8;MQRankSum=0.478;QD=3.23;ReadPosRankSum=-0.039;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,59:173:99:589,0,1058 chrIV 758124 . A G 1913 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=24.05;MQ0=6;MQRankSum=1.515;QD=12.93;ReadPosRankSum=2.380;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:2,146:148:99:1946,228,0 chrIV 758141 . G A 1557 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.608;DP=125;Dels=0.00;FS=11.285;HaplotypeScore=10.9971;MLEAC=2;MLEAF=1.00;MQ=23.36;MQ0=4;MQRankSum=1.911;QD=12.46;ReadPosRankSum=2.889;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:10,115:125:99:1590,149,0 chrIV 758144 . G A 83.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.166;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.4198;MLEAC=1;MLEAF=0.500;MQ=23.54;MQ0=4;MQRankSum=3.129;QD=0.65;ReadPosRankSum=-1.979;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,21:127:99:113,0,1090 chrIV 758150 . C T 1604 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.134;DP=124;Dels=0.00;FS=16.021;HaplotypeScore=8.0946;MLEAC=2;MLEAF=1.00;MQ=23.55;MQ0=4;MQRankSum=1.782;QD=12.94;ReadPosRankSum=0.891;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,120:124:99:1637,195,0 chrIV 758156 . A G 1850 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=133;Dels=0.00;FS=18.096;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=24.10;MQ0=4;MQRankSum=0.295;QD=13.91;ReadPosRankSum=2.412;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:1883,225,0 chrIV 758162 . C T 1991 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.7174;MLEAC=2;MLEAF=1.00;MQ=24.64;MQ0=1;QD=14.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2024,243,0 chrIV 758168 . G T 182.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.472;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=39.4845;MLEAC=1;MLEAF=0.500;MQ=24.72;MQ0=1;MQRankSum=-2.347;QD=1.17;ReadPosRankSum=-3.077;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,47:155:99:212,0,1412 chrIV 758172 . T C 1229.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.897;DP=188;Dels=0.00;FS=18.432;HaplotypeScore=99.6499;MLEAC=1;MLEAF=0.500;MQ=25.38;MQ0=1;MQRankSum=2.870;QD=6.54;ReadPosRankSum=6.648;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:98,90:188:99:1259,0,653 chrIV 758176 . A G 233.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.151;DP=204;Dels=0.00;FS=38.806;HaplotypeScore=118.8629;MLEAC=1;MLEAF=0.500;MQ=25.86;MQ0=1;MQRankSum=-3.036;QD=1.14;ReadPosRankSum=-4.708;SB=-1.230e+02 GT:AD:DP:GQ:PL 0/1:143,58:204:99:263,0,1865 chrIV 758180 . G A 1410.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.994;DP=228;Dels=0.00;FS=53.771;HaplotypeScore=109.7365;MLEAC=1;MLEAF=0.500;MQ=26.59;MQ0=3;MQRankSum=3.275;QD=6.18;ReadPosRankSum=6.995;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,93:228:99:1440,0,690 chrIV 758182 . C A 543.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.497;DP=232;Dels=0.00;FS=97.548;HaplotypeScore=106.8979;MLEAC=1;MLEAF=0.500;MQ=26.42;MQ0=7;MQRankSum=-2.563;QD=2.34;ReadPosRankSum=-4.847;SB=-2.820e+02 GT:AD:DP:GQ:PL 0/1:139,89:232:99:573,0,1756 chrIV 758211 . C A 403.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.170;DP=356;Dels=0.00;FS=12.591;HaplotypeScore=128.6624;MLEAC=1;MLEAF=0.500;MQ=25.82;MQ0=62;MQRankSum=-0.384;QD=1.13;ReadPosRankSum=-1.322;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:305,49:356:99:433,0,2374 chrIV 758219 . A T 1226.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;DP=385;Dels=0.00;FS=33.706;HaplotypeScore=125.9933;MLEAC=1;MLEAF=0.500;MQ=25.07;MQ0=85;MQRankSum=0.412;QD=3.18;ReadPosRankSum=-2.114;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:248,137:385:99:1256,0,1745 chrIV 758253 . G A 554.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.014;DP=325;Dels=0.00;FS=25.484;HaplotypeScore=20.9289;MLEAC=1;MLEAF=0.500;MQ=24.18;MQ0=94;MQRankSum=-0.456;QD=1.70;ReadPosRankSum=1.108;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:224,101:325:99:584,0,1983 chrIV 758289 . C T 377.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.828;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=35.0429;MLEAC=1;MLEAF=0.500;MQ=20.50;MQ0=61;MQRankSum=1.397;QD=2.69;ReadPosRankSum=1.298;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,59:140:99:407,0,498 chrIV 758294 . C A 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=34.0563;MLEAC=1;MLEAF=0.500;MQ=20.38;MQ0=49;MQRankSum=-1.630;QD=0.15;ReadPosRankSum=-1.506;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,20:111:47:47,0,575 chrIV 758306 . A G 202.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.461;DP=48;Dels=0.00;FS=4.210;HaplotypeScore=3.3239;MLEAC=1;MLEAF=0.500;MQ=21.18;MQ0=19;MQRankSum=0.876;QD=4.21;ReadPosRankSum=2.090;SB=-4.131e-03 GT:AD:DP:GQ:PL 0/1:22,26:48:38:232,0,38 chrIV 758310 . T C 281 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=25;Dels=0.00;FS=21.335;HaplotypeScore=5.1041;MLEAC=2;MLEAF=1.00;MQ=22.76;MQ0=6;MQRankSum=1.714;QD=11.24;ReadPosRankSum=1.565;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:2,19:25:36:314,36,0 chrIV 758318 . A G 122.98 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=24.24;MQ0=2;MQRankSum=1.611;QD=8.78;ReadPosRankSum=0.967;SB=-2.122e+01 GT:AD:DP:GQ:PL 0/1:2,12:14:3:152,0,3 chrIV 758333 . G A 109.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=1;MLEAF=0.500;MQ=20.26;MQ0=6;MQRankSum=-0.742;QD=8.42;ReadPosRankSum=0.742;SB=-2.221e+01 GT:AD:DP:GQ:PL 0/1:1,12:13:7:139,0,7 chrIV 758348 . A G 67.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.66;MQ0=12;MQRankSum=-0.731;QD=3.97;ReadPosRankSum=0.731;SB=-2.155e+01 GT:AD:DP:GQ:PL 1/1:1,16:17:12:100,12,0 chrIV 758360 . G T 82.79 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DP=27;Dels=0.00;FS=8.451;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=14.06;MQ0=20;MQRankSum=0.742;QD=3.07;ReadPosRankSum=-0.742;SB=-3.670e+00 GT:AD:DP:GQ:PL 0/1:18,9:27:4:112,0,4 chrIV 758372 . A G 60.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=36;Dels=0.00;FS=7.782;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=11.17;MQ0=30;MQRankSum=0.736;QD=1.68;ReadPosRankSum=-0.736;SB=-3.163e+00 GT:AD:DP:GQ:PL 0/1:23,12:36:7:90,0,7 chrIV 758414 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.582;DP=141;Dels=0.00;FS=49.123;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=9.23;MQ0=117;MQRankSum=3.460;QD=0.14;ReadPosRankSum=2.358;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:118,23:141:6:51,6,0 chrIV 758416 . C A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.425;DP=142;Dels=0.00;FS=53.103;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=9.22;MQ0=117;MQRankSum=3.538;QD=0.16;ReadPosRankSum=2.010;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:118,23:142:6:54,6,0 chrIV 758432 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.055;DP=157;Dels=0.00;FS=34.730;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=7.61;MQ0=133;MQRankSum=3.220;QD=0.11;ReadPosRankSum=-0.596;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:131,26:157:6:49,6,0 chrIV 758970 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.06;MQ0=5;QD=1.65;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:4,8:12:6:51,6,0 chrIV 758973 . C G 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=6;QD=1.98;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:4,8:13:6:57,6,0 chrIV 759002 . T C 63.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=26.3344;MLEAC=1;MLEAF=0.500;MQ=18.62;MQ0=7;MQRankSum=2.510;QD=1.38;ReadPosRankSum=0.441;SB=-3.408e+00 GT:AD:DP:GQ:PL 0/1:16,30:46:7:93,0,7 chrIV 759008 . T C 140.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.488;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=22.4829;MLEAC=2;MLEAF=1.00;MQ=17.71;MQ0=14;MQRankSum=3.074;QD=2.33;ReadPosRankSum=1.464;SB=-7.428e-02 GT:AD:DP:GQ:PL 1/1:26,34:60:21:173,21,0 chrIV 759017 . C T 95.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.126;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=13.7637;MLEAC=1;MLEAF=0.500;MQ=17.56;MQ0=21;MQRankSum=1.836;QD=1.27;ReadPosRankSum=0.009;SB=-1.338e-02 GT:AD:DP:GQ:PL 0/1:38,37:75:25:125,0,25 chrIV 759021 . A G 93.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.308;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=11.6012;MLEAC=1;MLEAF=0.500;MQ=17.73;MQ0=22;MQRankSum=2.130;QD=1.11;ReadPosRankSum=0.111;SB=-1.338e-02 GT:AD:DP:GQ:PL 0/1:43,37:84:25:123,0,25 chrIV 759030 . C T 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.702;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=14.7377;MLEAC=1;MLEAF=0.500;MQ=17.33;MQ0=26;MQRankSum=0.246;QD=0.47;ReadPosRankSum=1.796;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,23:107:80:80,0,175 chrIV 759032 . G A 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.908;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=17.37;MQ0=28;MQRankSum=0.209;QD=0.19;ReadPosRankSum=1.908;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,23:112:51:51,0,215 chrIV 759056 . A C 249.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.680;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.2946;MLEAC=1;MLEAF=0.500;MQ=16.75;MQ0=33;MQRankSum=-2.464;QD=1.73;ReadPosRankSum=0.850;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,126:144:99:279,0,180 chrIV 759062 . C A 103.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.915;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.5060;MLEAC=1;MLEAF=0.500;MQ=16.48;MQ0=37;MQRankSum=-0.385;QD=0.67;ReadPosRankSum=-0.822;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,70:154:99:133,0,301 chrIV 759086 . A G 452 filter AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.28;MQ0=43;QD=3.28;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:2,136:138:57:485,57,0 chrIV 759116 . A G 328 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=13.52;MQ0=42;MQRankSum=-1.155;QD=3.18;ReadPosRankSum=0.693;SB=-6.377e-03 GT:AD:DP:GQ:PL 1/1:2,99:103:42:361,42,0 chrIV 759136 . A G 12.29 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.569;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=12.4946;MLEAC=1;MLEAF=0.500;MQ=7.90;MQ0=68;MQRankSum=2.014;QD=0.11;ReadPosRankSum=-0.440;SB=-2.818e-02 GT:AD:DP:GQ:PL 0/1:86,16:107:20:42,0,20 chrIV 759140 . A G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.696;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2219;MLEAC=2;MLEAF=1.00;MQ=7.53;MQ0=75;MQRankSum=3.103;QD=0.18;ReadPosRankSum=-4.526;SB=2.02 GT:AD:DP:GQ:PL 1/1:72,33:106:6:50,6,0 chrIV 759184 . C A 55.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.049;DP=285;Dels=0.00;FS=71.079;HaplotypeScore=27.1171;MLEAC=1;MLEAF=0.500;MQ=11.89;MQ0=189;MQRankSum=2.556;QD=0.19;ReadPosRankSum=-2.296;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:245,25:285:85:85,0,382 chrIV 759200 . T C 349.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.444;DP=444;Dels=0.00;FS=74.703;HaplotypeScore=17.8199;MLEAC=1;MLEAF=0.500;MQ=15.85;MQ0=197;MQRankSum=3.843;QD=0.79;ReadPosRankSum=-3.199;SB=-1.570e+02 GT:AD:DP:GQ:PL 0/1:360,83:444:99:379,0,940 chrIV 759248 . C A 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.994;DP=552;Dels=0.00;FS=19.818;HaplotypeScore=157.0710;MLEAC=1;MLEAF=0.500;MQ=18.79;MQ0=142;MQRankSum=0.351;QD=0.06;ReadPosRankSum=-1.805;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:483,69:552:64:64,0,3038 chrIV 759249 . C T 199.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.029;DP=551;Dels=0.00;FS=1.380;HaplotypeScore=154.7050;MLEAC=1;MLEAF=0.500;MQ=18.78;MQ0=142;MQRankSum=-3.591;QD=0.36;ReadPosRankSum=-1.624;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:387,163:551:99:229,0,2538 chrIV 759254 . C A 2359.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.763;DP=536;Dels=0.00;FS=84.343;HaplotypeScore=153.9163;MLEAC=1;MLEAF=0.500;MQ=19.01;MQ0=128;MQRankSum=2.381;QD=4.40;ReadPosRankSum=5.426;SB=-9.890e+02 GT:AD:DP:GQ:PL 0/1:198,338:536:99:2389,0,252 chrIV 759278 . A G 1543.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180;DP=377;Dels=0.00;FS=11.539;HaplotypeScore=10.4408;MLEAC=1;MLEAF=0.500;MQ=20.15;MQ0=49;MQRankSum=1.616;QD=4.09;ReadPosRankSum=-1.686;SB=-1.050e+03 GT:AD:DP:GQ:PL 0/1:82,295:377:99:1573,0,157 chrIV 759293 . G A 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.860;DP=223;Dels=0.00;FS=2.283;HaplotypeScore=48.1860;MLEAC=1;MLEAF=0.500;MQ=19.12;MQ0=48;MQRankSum=1.252;QD=0.18;ReadPosRankSum=-1.315;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:157,65:223:70:70,0,619 chrIV 759302 . T C 72.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;DP=147;Dels=0.00;FS=22.650;HaplotypeScore=33.9946;MLEAC=1;MLEAF=0.500;MQ=15.79;MQ0=55;MQRankSum=-0.031;QD=0.49;ReadPosRankSum=2.120;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:117,30:147:99:102,0,449 chrIV 759308 . A G 247.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;DP=112;Dels=0.00;FS=52.974;HaplotypeScore=12.0182;MLEAC=1;MLEAF=0.500;MQ=14.61;MQ0=55;MQRankSum=-1.636;QD=2.21;ReadPosRankSum=2.738;SB=-7.002e+01 GT:AD:DP:GQ:PL 0/1:34,78:112:99:277,0,121 chrIV 759320 . G T 128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.001;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.1246;MLEAC=1;MLEAF=0.500;MQ=11.04;MQ0=46;MQRankSum=0.755;QD=1.60;ReadPosRankSum=-3.021;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:54,24:80:99:158,0,153 chrIV 759324 . T C 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;DP=78;Dels=0.00;FS=9.999;HaplotypeScore=8.1134;MLEAC=1;MLEAF=0.500;MQ=10.41;MQ0=48;MQRankSum=-1.539;QD=0.24;ReadPosRankSum=2.127;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,35:78:49:49,0,235 chrIV 759332 . A G 25.23 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;DP=71;Dels=0.00;FS=5.497;HaplotypeScore=2.3983;MLEAC=1;MLEAF=0.500;MQ=7.17;MQ0=55;MQRankSum=0.893;QD=0.36;ReadPosRankSum=-1.628;SB=-4.481e+01 GT:AD:DP:GQ:PL 0/1:42,29:71:10:55,0,10 chrIV 759405 . G A 404.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.106;DP=404;Dels=0.00;FS=52.111;HaplotypeScore=48.3047;MLEAC=1;MLEAF=0.500;MQ=10.52;MQ0=198;MQRankSum=4.392;QD=1.00;ReadPosRankSum=-0.306;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:205,199:404:99:434,0,144 chrIV 759441 . C T 442.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.138;DP=419;Dels=0.00;FS=74.514;HaplotypeScore=64.1168;MLEAC=1;MLEAF=0.500;MQ=13.63;MQ0=150;MQRankSum=3.463;QD=1.05;ReadPosRankSum=-0.611;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:245,171:419:99:472,0,296 chrIV 759446 . C A 112.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.753;DP=402;Dels=0.00;FS=49.448;HaplotypeScore=64.0388;MLEAC=1;MLEAF=0.500;MQ=14.46;MQ0=130;MQRankSum=0.617;QD=0.28;ReadPosRankSum=0.484;SB=-1.710e+02 GT:AD:DP:GQ:PL 0/1:249,153:402:99:142,0,588 chrIV 759458 . G A 124.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.037;DP=352;Dels=0.00;FS=39.842;HaplotypeScore=6.9633;MLEAC=1;MLEAF=0.500;MQ=16.58;MQ0=89;MQRankSum=-0.873;QD=0.35;ReadPosRankSum=1.040;SB=-1.340e+02 GT:AD:DP:GQ:PL 0/1:212,140:352:99:154,0,605 chrIV 759468 . A G 735 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.086;DP=298;Dels=0.00;FS=26.567;HaplotypeScore=22.4558;MLEAC=2;MLEAF=1.00;MQ=18.28;MQ0=53;MQRankSum=3.100;QD=2.47;ReadPosRankSum=4.179;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:10,288:298:90:768,90,0 chrIV 759485 . G A 389.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.515;DP=227;Dels=0.00;FS=12.719;HaplotypeScore=51.2715;MLEAC=1;MLEAF=0.500;MQ=21.24;MQ0=23;MQRankSum=2.929;QD=1.71;ReadPosRankSum=-0.170;SB=-1.150e+02 GT:AD:DP:GQ:PL 0/1:98,129:227:49:419,0,49 chrIV 759488 . G A 57.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.805;DP=222;Dels=0.00;FS=3.368;HaplotypeScore=52.2449;MLEAC=1;MLEAF=0.500;MQ=21.83;MQ0=20;MQRankSum=1.159;QD=0.26;ReadPosRankSum=1.143;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:188,34:222:87:87,0,325 chrIV 759494 . C T 438 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.080;DP=207;Dels=0.00;FS=17.647;HaplotypeScore=63.3639;MLEAC=2;MLEAF=1.00;MQ=22.61;MQ0=16;MQRankSum=2.377;QD=2.12;ReadPosRankSum=0.571;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:23,184:207:37:471,37,0 chrIV 759500 . A G 337.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.242;DP=195;Dels=0.00;FS=31.792;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=23.38;MQ0=12;MQRankSum=3.164;QD=1.73;ReadPosRankSum=2.798;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:22,173:195:24:370,24,0 chrIV 759506 . C T 396 filter AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=38.1369;MLEAC=2;MLEAF=1.00;MQ=24.18;MQ0=8;QD=2.16;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,183:183:51:429,51,0 chrIV 759512 . G T 137.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.542;DP=181;Dels=0.00;FS=14.112;HaplotypeScore=63.5615;MLEAC=1;MLEAF=0.500;MQ=24.42;MQ0=8;MQRankSum=-0.756;QD=0.76;ReadPosRankSum=-1.610;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:103,78:181:99:167,0,99 chrIV 759540 . G C 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.867;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=25.6446;MLEAC=1;MLEAF=0.500;MQ=26.02;MQ0=1;MQRankSum=-0.329;QD=0.16;ReadPosRankSum=-7.404;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:111,30:141:52:52,0,102 chrIV 759546 . A G 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.442;DP=120;Dels=0.00;FS=56.007;HaplotypeScore=10.8847;MLEAC=1;MLEAF=0.500;MQ=26.17;MQ0=2;MQRankSum=-0.603;QD=0.20;ReadPosRankSum=-1.168;SB=0.528 GT:AD:DP:GQ:PL 0/1:104,16:120:54:54,0,153 chrIV 759549 . C G 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.169;DP=114;Dels=0.00;FS=69.092;HaplotypeScore=13.6136;MLEAC=1;MLEAF=0.500;MQ=26.05;MQ0=2;MQRankSum=-1.264;QD=0.21;ReadPosRankSum=-1.583;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:96,17:114:54:54,0,142 chrIV 759566 . G A 289.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;DP=129;Dels=0.00;FS=79.022;HaplotypeScore=8.7969;MLEAC=1;MLEAF=0.500;MQ=25.22;MQ0=4;MQRankSum=4.871;QD=2.24;ReadPosRankSum=2.284;SB=-3.502e+01 GT:AD:DP:GQ:PL 0/1:27,102:129:64:319,0,64 chrIV 759568 . A C 320.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.432;DP=130;Dels=0.00;FS=79.022;HaplotypeScore=16.4291;MLEAC=1;MLEAF=0.500;MQ=25.25;MQ0=4;MQRankSum=4.221;QD=2.46;ReadPosRankSum=2.061;SB=-5.402e+01 GT:AD:DP:GQ:PL 0/1:27,102:130:61:350,0,61 chrIV 759578 . T C 430.09 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.910;DP=140;Dels=0.00;FS=25.979;HaplotypeScore=24.7635;MLEAC=1;MLEAF=0.500;MQ=25.22;MQ0=11;MQRankSum=0.342;QD=3.07;ReadPosRankSum=2.922;SB=-1.161e+02 GT:AD:DP:GQ:PL 0/1:15,125:140:14:460,0,14 chrIV 759586 . C T 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.839;DP=152;Dels=0.00;FS=16.097;HaplotypeScore=16.0100;MLEAC=1;MLEAF=0.500;MQ=24.91;MQ0=21;MQRankSum=0.882;QD=0.20;ReadPosRankSum=-2.541;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:137,15:152:60:60,0,631 chrIV 759593 . C T 733.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.776;DP=162;Dels=0.00;FS=13.963;HaplotypeScore=11.4759;MLEAC=1;MLEAF=0.500;MQ=24.99;MQ0=24;MQRankSum=-0.532;QD=4.52;ReadPosRankSum=1.809;SB=-1.190e+02 GT:AD:DP:GQ:PL 0/1:17,145:162:87:763,0,87 chrIV 759633 . C T 2452.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.698;DP=376;Dels=0.00;FS=162.740;HaplotypeScore=80.4906;MLEAC=1;MLEAF=0.500;MQ=29.73;MQ0=58;MQRankSum=5.444;QD=6.52;ReadPosRankSum=1.881;SB=-7.640e+02 GT:AD:DP:GQ:PL 0/1:187,189:376:99:2482,0,2001 chrIV 759638 . C A 235.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.002;DP=382;Dels=0.00;FS=61.911;HaplotypeScore=79.7566;MLEAC=1;MLEAF=0.500;MQ=29.94;MQ0=57;MQRankSum=-6.385;QD=0.62;ReadPosRankSum=-1.510;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:287,94:382:99:265,0,3733 chrIV 759650 . G A 282.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.242;DP=377;Dels=0.00;FS=47.404;HaplotypeScore=7.2760;MLEAC=1;MLEAF=0.500;MQ=31.24;MQ0=55;MQRankSum=-4.981;QD=0.75;ReadPosRankSum=2.815;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:295,82:377:99:312,0,4217 chrIV 759660 . A G 6932.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=410;Dels=0.00;FS=2.783;HaplotypeScore=6.2401;MLEAC=2;MLEAF=1.00;MQ=31.76;MQ0=55;MQRankSum=0.738;QD=16.91;ReadPosRankSum=2.394;SB=-3.409e+03 GT:AD:DP:GQ:PL 1/1:2,407:410:99:6932,735,0 chrIV 759677 . G A 2630.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.197;DP=426;Dels=0.00;FS=30.022;HaplotypeScore=81.6332;MLEAC=1;MLEAF=0.500;MQ=33.61;MQ0=43;MQRankSum=-1.599;QD=6.17;ReadPosRankSum=-3.501;SB=-1.036e+03 GT:AD:DP:GQ:PL 0/1:224,202:426:99:2660,0,2539 chrIV 759686 . T C 1920.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.627;DP=430;Dels=0.00;FS=90.799;HaplotypeScore=99.5950;MLEAC=1;MLEAF=0.500;MQ=35.00;MQ0=34;MQRankSum=6.535;QD=4.47;ReadPosRankSum=2.147;SB=-8.650e+02 GT:AD:DP:GQ:PL 0/1:276,154:430:99:1950,0,3565 chrIV 759704 . G T 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;DP=337;Dels=0.00;FS=46.769;HaplotypeScore=116.6079;MLEAC=1;MLEAF=0.500;MQ=36.86;MQ0=15;MQRankSum=-4.681;QD=0.03;ReadPosRankSum=-5.247;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:264,72:337:40:40,0,4335 chrIV 759712 . A G 788.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.506;DP=271;Dels=0.00;FS=13.370;HaplotypeScore=67.3338;MLEAC=1;MLEAF=0.500;MQ=39.10;MQ0=4;MQRankSum=-4.465;QD=2.91;ReadPosRankSum=6.222;SB=-2.370e+02 GT:AD:DP:GQ:PL 0/1:191,79:271:99:818,0,2666 chrIV 759714 . A G 900.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.137;DP=264;Dels=0.00;FS=11.606;HaplotypeScore=62.2451;MLEAC=1;MLEAF=0.500;MQ=39.81;MQ0=3;MQRankSum=-4.984;QD=3.41;ReadPosRankSum=4.397;SB=-2.600e+02 GT:AD:DP:GQ:PL 0/1:174,89:264:99:930,0,2380 chrIV 760206 . G C 2564 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2597,300,0 chrIV 760350 . A G 4194.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4194,477,0 chrIV 760520 . G T 3685.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.94;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3685,420,0 chrIV 760775 . T C 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.269;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.730;QD=22.44;ReadPosRankSum=1.675;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2748,321,0 chrIV 761335 . T C 1897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=4.407;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;MQRankSum=0.000;QD=23.71;ReadPosRankSum=1.689;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1930,219,0 chrIV 761375 . T C 2185 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.1774;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=23.75;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2218,249,0 chrIV 761459 . C A 2064 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=23.19;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2097,228,0 chrIV 761751 . C T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3328,366,0 chrIV 762069 . C T 4401.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4401,486,0 chrIV 762243 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.5566;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.20;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3436,372,0 chrIV 762834 . G A 4692.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.4244;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.34;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4692,528,0 chrIV 762896 . T A 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=179;Dels=0.00;FS=3.035;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=1.035;QD=23.17;ReadPosRankSum=1.674;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4148,468,0 chrIV 763036 . T C 5068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=239;Dels=0.00;FS=2.923;HaplotypeScore=19.7170;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.155;QD=21.21;ReadPosRankSum=2.418;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:2,235:239:99:5068,591,0 chrIV 763076 . A T 5718.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=15.4717;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.92;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5718,627,0 chrIV 763207 . A G 5517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=270;Dels=0.00;FS=5.929;HaplotypeScore=22.7121;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.074;QD=20.43;ReadPosRankSum=2.967;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:3,267:270:99:5517,645,0 chrIV 763658 . A C 4440.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4440,507,0 chrIV 764003 . C T 2456 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.39;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2489,270,0 chrIV 764292 . C T 5250.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.8734;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.76;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5250,573,0 chrIV 764352 . A G 4473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=217;Dels=0.00;FS=2.654;HaplotypeScore=12.5460;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.436;QD=20.61;ReadPosRankSum=2.427;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:4473,519,0 chrIV 764454 . C T 3823.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.81;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3823,432,0 chrIV 764493 . A G 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.035;QD=21.46;ReadPosRankSum=1.674;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:3884,453,0 chrIV 764517 . A G 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=182;Dels=0.00;FS=5.672;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.717;QD=21.79;ReadPosRankSum=2.950;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:3,178:182:99:3965,450,0 chrIV 764637 . T C 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.229;QD=22.19;ReadPosRankSum=1.681;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3073,348,0 chrIV 764691 . G A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.20;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3582,393,0 chrIV 764844 . T A 3549.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.66;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3549,396,0 chrIV 764930 . C T 3660.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.5186;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.59;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3660,417,0 chrIV 764994 . A G 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=153;Dels=0.00;FS=3.039;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.975;QD=20.48;ReadPosRankSum=2.400;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:2,148:153:99:3166,372,0 chrIV 765216 . G A 4621.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.71;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4621,507,0 chrIV 765270 . T A 4660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=197;Dels=0.00;FS=3.914;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.941;QD=23.65;ReadPosRankSum=1.697;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4660,504,0 chrIV 765331 . C T 4558.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.68;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4558,492,0 chrIV 765398 . T A 3875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=170;Dels=0.00;FS=5.377;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.031;QD=22.79;ReadPosRankSum=1.712;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3875,423,0 chrIV 765617 . G A 2671 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.85;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2704,294,0 chrIV 765655 . T C 2140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.404;QD=22.53;ReadPosRankSum=1.696;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2173,246,0 chrIV 765670 . C G 2302 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.31;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2335,264,0 chrIV 765711 . T C 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=135;Dels=0.00;FS=3.563;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.551;QD=20.21;ReadPosRankSum=1.706;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2762,318,0 chrIV 765867 . G A 3485.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.71;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3485,378,0 chrIV 766047 . A C 4279.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.40;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4279,501,0 chrIV 766623 . A C 1231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=76;Dels=0.01;FS=4.543;HaplotypeScore=22.6105;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.936;QD=16.20;ReadPosRankSum=1.685;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1264,147,0 chrIV 766688 . T G 2496 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.47;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2529,288,0 chrIV 767007 . C T 4127.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.06;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4127,450,0 chrIV 767443 . A G 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=148;Dels=0.01;FS=2.934;HaplotypeScore=8.8421;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.911;QD=20.56;ReadPosRankSum=2.416;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3076,348,0 chrIV 767552 . G A 3612.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.63;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3612,411,0 chrIV 767675 . C T 4436.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.7190;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.75;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4436,483,0 chrIV 767792 . T C 3881.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.0184;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.56;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3881,441,0 chrIV 767888 . G A 2928 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.0160;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.77;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2961,324,0 chrIV 768037 . T C 1908 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1941,219,0 chrIV 768366 . C A 2651 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.28;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2684,291,0 chrIV 768390 . T A 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-1.248;QD=21.27;ReadPosRankSum=1.659;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3074,336,0 chrIV 768581 . A G 5361.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=19.8652;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.62;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5361,629,0 chrIV 769198 . G C 4253.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.27;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4253,498,0 chrIV 769356 . G T 2823 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.2240;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=17.32;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2856,318,0 chrIV 769373 . A G 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=182;Dels=0.00;FS=2.582;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=-1.956;QD=16.31;ReadPosRankSum=2.884;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:3001,348,0 chrIV 769393 . C T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.8825;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=18.22;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3239,360,0 chrIV 769508 . G A 3007 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.49;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3040,330,0 chrIV 769896 . T C 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=3.912;HaplotypeScore=10.5538;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.433;QD=19.52;ReadPosRankSum=1.667;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3156,360,0 chrIV 770035 . T C 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.979;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=-1.524;QD=20.25;ReadPosRankSum=1.663;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3070,342,0 chrIV 770047 . A G 2915 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=19.05;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2948,336,0 chrIV 770283 . A T 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=134;Dels=0.00;FS=4.426;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=1.003;QD=22.14;ReadPosRankSum=1.706;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3000,330,0 chrIV 770297 . T C 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=0.190;QD=20.02;ReadPosRankSum=2.413;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2776,312,0 chrIV 770309 . C T 2857 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=20.70;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2890,324,0 chrIV 770352 . C T 2374 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.69;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2407,264,0 chrIV 770770 . C T 4313.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4313,480,0 chrIV 771070 . A T 5141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=222;Dels=0.00;FS=3.747;HaplotypeScore=13.8085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.700;QD=23.16;ReadPosRankSum=1.700;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:5141,567,0 chrIV 771211 . T C 5090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.343;QD=21.39;ReadPosRankSum=1.674;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:1,237:238:99:5090,594,0 chrIV 771632 . T A 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.6921;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.537;QD=22.71;ReadPosRankSum=1.704;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2872,324,0 chrIV 771858 . C T 3793.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.2345;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.13;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3793,411,0 chrIV 772038 . C T 3226.07 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.72;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3259,354,0 chrIV 772062 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.63;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3126,339,0 chrIV 772698 . A G 4578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=206;Dels=0.00;FS=3.119;HaplotypeScore=11.0319;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.698;QD=22.22;ReadPosRankSum=1.715;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:1,202:206:99:4578,531,0 chrIV 773193 . A G 2983 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.60;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3016,354,0 chrIV 773522 . A G 2270 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2303,261,0 chrIV 773628 . C T 2255 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.48;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2288,252,0 chrIV 773652 . C T 1953 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=18.25;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1986,219,0 chrIV 773670 . T C 1914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7316;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=0.577;QD=17.24;ReadPosRankSum=1.670;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1947,228,0 chrIV 773703 . C T 2146 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.4216;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.19;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2179,237,0 chrIV 773757 . T A 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.307;QD=23.74;ReadPosRankSum=1.658;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3395,372,0 chrIV 773893 . G C 3575.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.77;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3575,408,0 chrIV 774079 . G A 3537.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.90;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3537,384,0 chrIV 774106 . A G 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=141;Dels=0.00;FS=2.962;HaplotypeScore=9.9047;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.270;QD=22.70;ReadPosRankSum=2.362;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3233,369,0 chrIV 774288 . A C 2229 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.64;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2262,255,0 chrIV 774536 . G A 2375 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.02;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2408,270,0 chrIV 774730 . A G 2815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.170;QD=22.89;ReadPosRankSum=1.675;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2848,327,0 chrIV 774849 . T C 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=126;Dels=0.00;FS=4.157;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.125;QD=21.18;ReadPosRankSum=1.704;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2702,318,0 chrIV 775265 . G A 4286.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.6706;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.17;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4286,459,0 chrIV 775287 . T C 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=194;Dels=0.00;FS=3.288;HaplotypeScore=7.5510;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.179;QD=21.01;ReadPosRankSum=1.714;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4076,462,0 chrIV 775518 . T C 4422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=225;Dels=0.00;FS=5.750;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.072;QD=19.65;ReadPosRankSum=2.942;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:3,221:225:99:4422,507,0 chrIV 775554 . C T 4288.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.12;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4288,483,0 chrIV 775671 . T C 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=152;Dels=0.00;FS=14.491;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.013;QD=20.49;ReadPosRankSum=2.940;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:3,147:152:99:3147,372,0 chrIV 775744 . T C 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=163;Dels=0.00;FS=5.734;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.194;QD=19.75;ReadPosRankSum=1.711;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3253,375,0 chrIV 775941 . G A 2403 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.03;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2436,267,0 chrIV 775992 . T A 2081 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.23;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2114,225,0 chrIV 775997 . A G 1723 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=17.95;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1756,207,0 chrIV 776086 . G A 3924.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.07;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3924,426,0 chrIV 776219 . T C 3012 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.48;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3045,345,0 chrIV 776259 . C A 3351.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.43;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3351,369,0 chrIV 776284 . C G 3177 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.22;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:3210,366,0 chrIV 776344 . G C 2744 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.78;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2777,315,0 chrIV 776360 . G T 2916 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=24.10;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2949,312,0 chrIV 776432 . T C 2940 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2973,342,0 chrIV 776627 . A G 3162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=140;Dels=0.00;FS=3.722;HaplotypeScore=8.4884;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.159;QD=22.59;ReadPosRankSum=1.707;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3195,360,0 chrIV 776679 . G A 2721 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2754,312,0 chrIV 776715 . A G 2638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=4.374;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.256;QD=22.74;ReadPosRankSum=1.702;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2671,306,0 chrIV 776907 . A G 4049.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.62;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4049,474,0 chrIV 777029 . T C 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.680;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.601;QD=22.47;ReadPosRankSum=1.709;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3325,372,0 chrIV 777317 . C G 4005.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.25;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4005,453,0 chrIV 777389 . C T 3979.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.98;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3979,444,0 chrIV 777438 . G A 3909.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.08;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3909,435,0 chrIV 777449 . A C 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.1817;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.377;QD=21.47;ReadPosRankSum=1.693;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3865,435,0 chrIV 777638 . A C 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=3.093;HaplotypeScore=15.8926;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.054;QD=22.93;ReadPosRankSum=1.710;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3668,414,0 chrIV 778062 . A T 5059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=216;Dels=0.00;FS=7.265;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.040;QD=23.42;ReadPosRankSum=2.415;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:5059,543,0 chrIV 778091 . G A 5206.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.3186;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.93;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:5206,562,0 chrIV 778122 . C T 5639.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=15.7422;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.20;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,230:233:99:5639,609,0 chrIV 778253 . C A 4566.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.38;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4566,504,0 chrIV 778301 . G A 4717.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.79;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4717,513,0 chrIV 778415 . C T 3939.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.3247;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.13;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3939,426,0 chrIV 778463 . T C 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.667;DP=192;Dels=0.00;FS=6.037;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.804;QD=21.20;ReadPosRankSum=2.963;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:3,187:192:99:4070,462,0 chrIV 778654 . C A 2334 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=22.23;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2367,258,0 chrIV 778694 . G A 1798 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.0510;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=21.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1831,198,0 chrIV 778709 . C T 1444 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.59;MQ0=0;QD=22.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1477,162,0 chrIV 778721 . G A 1169 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;QD=22.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1202,132,0 chrIV 778722 . G A 1104 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;QD=20.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1137,129,0 chrIV 778775 . T G 45.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=7.66;SB=-2.747e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:78,9,0 chrIV 778856 . C A 376 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=15.67;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:45:409,45,0 chrIV 778864 . C A 382 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=12.32;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,30:31:45:415,45,0 chrIV 778868 . C A 429 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=11.59;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:51:462,51,0 chrIV 779161 . A G 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=128;Dels=0.00;FS=3.369;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.220;QD=23.22;ReadPosRankSum=1.705;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3005,345,0 chrIV 779427 . G A 3136 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.93;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3169,351,0 chrIV 779456 . T C 2813 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.50;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2846,324,0 chrIV 779966 . A G 2476 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.50;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2509,282,0 chrIV 780011 . T C 2593 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.50;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2626,297,0 chrIV 780027 . G A 2420 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=19.36;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2453,282,0 chrIV 780587 . C G 3805.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.3140;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.87;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3805,435,0 chrIV 780979 . T C 2449 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7583;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.91;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2482,288,0 chrIV 781093 . G A 3178 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7666;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.19;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3211,351,0 chrIV 781098 . C A 3074 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.9312;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=21.35;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3107,345,0 chrIV 781103 . T C 2969 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.573;HaplotypeScore=2.7199;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=-1.498;QD=20.06;ReadPosRankSum=1.709;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3002,342,0 chrIV 781139 . G A 2726 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.19;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2759,303,0 chrIV 781241 . G C 3019 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.82;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3052,342,0 chrIV 781395 . G A 3814.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.45;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3814,414,0 chrIV 781421 . C T 3694.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.09;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3694,402,0 chrIV 781568 . G A 4301.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.30;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4301,471,0 chrIV 781624 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.695;QD=23.42;ReadPosRankSum=1.711;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3911,450,0 chrIV 781717 . G A 3556.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.52;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3556,384,0 chrIV 781779 . A T 3568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.516;QD=23.17;ReadPosRankSum=1.686;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3568,399,0 chrIV 781809 . G A 3839.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.30;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3839,420,0 chrIV 782125 . A G 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=123;Dels=0.00;FS=2.951;HaplotypeScore=8.2654;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.595;QD=23.52;ReadPosRankSum=2.389;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:2926,330,0 chrIV 782214 . G A 2891 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.0734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2924,312,0 chrIV 782410 . A G 2541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=131;Dels=0.00;FS=3.182;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.255;QD=19.40;ReadPosRankSum=1.652;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2574,288,0 chrIV 782863 . T C 2617 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.76;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2650,303,0 chrIV 783041 . G A 2833 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.79;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2866,315,0 chrIV 783163 . C T 3299.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3299,366,0 chrIV 783285 . T C 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.556;QD=22.15;ReadPosRankSum=1.673;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3943,450,0 chrIV 784060 . G A 3001 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3034,342,0 chrIV 784297 . T C 3827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.5874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.653;QD=22.92;ReadPosRankSum=1.691;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3827,438,0 chrIV 784492 . T A 4365.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=19.0765;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.83;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4365,474,0 chrIV 784537 . C T 3780.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.92;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3780,414,0 chrIV 784644 . A G 3368.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.8338;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.18;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3368,393,0 chrIV 785156 . C A 2962 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.1227;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.94;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2995,342,0 chrIV 785443 . T C 2473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=114;Dels=0.00;FS=3.015;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.529;QD=21.69;ReadPosRankSum=2.407;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2506,276,0 chrIV 785712 . A G 2659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.097;QD=21.10;ReadPosRankSum=1.704;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2692,309,0 chrIV 785881 . G A 2155 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.4192;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.77;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2188,243,0 chrIV 785924 . A T 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=106;Dels=0.00;FS=3.441;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.523;QD=22.86;ReadPosRankSum=1.699;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2456,264,0 chrIV 786028 . C T 2365 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2398,270,0 chrIV 786128 . T C 2964 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2997,345,0 chrIV 786657 . T C 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=3.476;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.028;QD=22.57;ReadPosRankSum=1.703;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2696,306,0 chrIV 786948 . G A 2409 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2442,264,0 chrIV 787254 . T C 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=149;Dels=0.00;FS=6.095;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.308;QD=19.57;ReadPosRankSum=2.939;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:3,144:149:99:2949,333,0 chrIV 787523 . C T 2840 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.68;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2873,312,0 chrIV 787605 . G A 2419 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=24.43;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2452,270,0 chrIV 787632 . T C 2381 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=24.05;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2414,273,0 chrIV 787649 . A G 2329 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=23.06;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2362,267,0 chrIV 788528 . A G 1897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=87;Dels=0.00;FS=11.941;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.318;QD=21.80;ReadPosRankSum=2.895;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:3,83:87:99:1930,219,0 chrIV 788724 . G A 2281 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.72;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2314,249,0 chrIV 788889 . G A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.07;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3484,393,0 chrIV 789237 . T C 3026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=148;Dels=0.00;FS=7.185;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-1.055;QD=20.45;ReadPosRankSum=2.383;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3059,348,0 chrIV 789240 . G A 3074 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.05;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3107,342,0 chrIV 789328 . A G 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=3.172;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.100;QD=22.47;ReadPosRankSum=1.707;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3111,348,0 chrIV 789368 . T A 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=1.030;QD=20.17;ReadPosRankSum=1.638;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3038,342,0 chrIV 789392 . C A 3035 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.08;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3068,348,0 chrIV 789595 . G A 3155 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=15.1878;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.32;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3188,348,0 chrIV 789748 . C T 4987.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=18.8244;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.45;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4987,543,0 chrIV 790216 . G T 3932.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.86;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3932,441,0 chrIV 790489 . A G 2639 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.11;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2672,309,0 chrIV 791041 . T C 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.012;QD=21.12;ReadPosRankSum=1.583;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2968,351,0 chrIV 791482 . A G 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.214;QD=21.44;ReadPosRankSum=1.693;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1941,225,0 chrIV 791869 . C T 2398 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.50;MQ0=0;QD=22.20;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2431,264,0 chrIV 792170 . G A 997 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=7.7145;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=16.62;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1030,114,0 chrIV 792541 . G A 4683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.055;DP=222;Dels=0.00;FS=4.059;HaplotypeScore=10.0239;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.672;QD=21.09;ReadPosRankSum=1.447;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:4683,543,0 chrIV 792642 . C G 4625.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.02;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4625,522,0 chrIV 793089 . C T 4107.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.7756;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.17;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4107,453,0 chrIV 793254 . T C 4258.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.1206;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.08;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4258,492,0 chrIV 793374 . T C 4384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.315;DP=204;Dels=0.00;FS=21.873;HaplotypeScore=11.3606;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.115;QD=21.49;ReadPosRankSum=3.392;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:4,200:204:99:4384,498,0 chrIV 793726 . A T 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.0836;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.767;QD=22.64;ReadPosRankSum=1.675;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2818,309,0 chrIV 793822 . C T 1803 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.40;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1836,198,0 chrIV 793980 . A G 2583 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.08;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2616,297,0 chrIV 794057 . T C 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=141;Dels=0.00;FS=2.447;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.439;QD=23.21;ReadPosRankSum=2.864;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:3,137:141:99:3273,375,0 chrIV 794820 . T C 2995 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.39;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3028,345,0 chrIV 795302 . C T 3384.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.26;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3384,366,0 chrIV 795372 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.47;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3828,414,0 chrIV 795382 . G T 3990.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.15;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3990,432,0 chrIV 795498 . A T 4926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=207;Dels=0.00;FS=4.108;HaplotypeScore=16.7630;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=-1.244;QD=23.80;ReadPosRankSum=1.698;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4926,561,0 chrIV 795537 . C G 3677.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=21.01;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3677,438,0 chrIV 795541 . A G 3435.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=19.52;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3435,402,0 chrIV 795591 . T C 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=166;Dels=0.00;FS=7.662;HaplotypeScore=11.9447;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;MQRankSum=0.481;QD=15.17;ReadPosRankSum=2.420;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:2552,285,0 chrIV 795652 . G A 4469.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=19.77;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4469,498,0 chrIV 795663 . G A 4549.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.97;MQ0=0;QD=19.69;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4549,510,0 chrIV 795676 . G A 4649.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;QD=18.75;SB=-2.971e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:4649,528,0 chrIV 795696 . A T 4457.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=18.97;SB=-3.133e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4457,486,0 chrIV 795718 . T C 3682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.9289;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;MQRankSum=-1.309;QD=16.59;ReadPosRankSum=1.685;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:3682,435,0 chrIV 795802 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.4786;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=-1.031;QD=18.03;ReadPosRankSum=1.382;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3260,357,0 chrIV 795803 . G C 3060 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=2.6899;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=17.59;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3093,354,0 chrIV 795834 . T C 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=207;Dels=0.00;FS=6.169;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=-0.148;QD=16.32;ReadPosRankSum=2.355;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:3378,387,0 chrIV 795851 . T A 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=211;Dels=0.00;FS=3.512;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;MQRankSum=-0.271;QD=17.06;ReadPosRankSum=1.699;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:3600,399,0 chrIV 795883 . G A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=18.51;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4109,462,0 chrIV 796092 . C T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.05;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3726,402,0 chrIV 796104 . T A 3130 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.56;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3163,357,0 chrIV 796146 . T C 3092 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.89;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3125,357,0 chrIV 796175 . G T 3326.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.10;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3326,369,0 chrIV 796851 . C T 4921.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=21.4457;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4921,537,0 chrIV 797141 . G A 5485.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=12.9289;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:5485,624,0 chrIV 797467 . G A 3905.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.52;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3905,423,0 chrIV 797669 . T C 2218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.245;DP=167;Dels=0.00;FS=13.738;HaplotypeScore=5.1335;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=1.446;QD=13.28;ReadPosRankSum=3.584;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:7,159:167:99:2251,273,0 chrIV 797670 . C T 2256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.642;DP=168;Dels=0.00;FS=16.558;HaplotypeScore=4.3449;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=1.915;QD=13.43;ReadPosRankSum=3.796;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:8,159:168:99:2289,276,0 chrIV 798512 . C T 3634.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.60;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3634,396,0 chrIV 798580 . C T 3443.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.0738;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.36;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3443,384,0 chrIV 799304 . A G 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=160;Dels=0.00;FS=3.038;HaplotypeScore=13.3679;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.636;QD=22.40;ReadPosRankSum=2.373;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3584,414,0 chrIV 799339 . A G 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=156;Dels=0.00;FS=9.634;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.297;QD=22.88;ReadPosRankSum=2.826;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:3569,405,0 chrIV 799796 . G A 3653.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.0729;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.14;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3653,417,0 chrIV 799997 . T C 4124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=196;Dels=0.00;FS=3.687;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-1.482;QD=21.04;ReadPosRankSum=1.643;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:4124,480,0 chrIV 800015 . T C 3807.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=19.73;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,187:193:99:3807,444,0 chrIV 800174 . C T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.41;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3564,381,0 chrIV 800342 . G A 2701 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2734,297,0 chrIV 800544 . A G 4452.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.31;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4452,527,0 chrIV 800815 . C T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.60;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3564,387,0 chrIV 800855 . T G 3076 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=19.11;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3109,354,0 chrIV 800862 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.27;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3304,360,0 chrIV 801365 . G A 2590 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.9065;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2623,300,0 chrIV 801878 . C T 4679.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=6.8965;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.34;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4679,513,0 chrIV 802100 . A G 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=-1.486;QD=17.51;ReadPosRankSum=1.718;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,238:240:99:4202,486,0 chrIV 802112 . A T 4357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=246;Dels=0.00;FS=2.544;HaplotypeScore=6.4548;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;MQRankSum=-2.523;QD=17.71;ReadPosRankSum=2.805;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:3,243:246:99:4357,489,0 chrIV 802553 . A C 2002 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=23.55;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2035,234,0 chrIV 802610 . C T 2556 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=23.45;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2589,285,0 chrIV 802627 . A C 2208 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.61;MQ0=0;QD=21.65;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2241,261,0 chrIV 802713 . T A 1844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=6.829;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=2.015;QD=21.69;ReadPosRankSum=2.392;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1877,210,0 chrIV 802822 . T A 1213 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.54;MQ0=0;QD=21.66;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1246,135,0 chrIV 802824 . C T 1180 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.63;MQ0=0;QD=21.45;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1213,129,0 chrIV 802863 . C T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=115.9810;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.000;QD=0.44;ReadPosRankSum=-2.350;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:27,3:30:38:43,0,38 chrIV 802878 . T A 552 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.03;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,28:29:63:585,63,0 chrIV 802905 . T C 766 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=48;Dels=0.00;FS=16.628;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=2;MQRankSum=1.657;QD=15.96;ReadPosRankSum=1.281;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,45:48:93:799,93,0 chrIV 802914 . A T 724 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.549;DP=46;Dels=0.00;FS=16.128;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=5;MQRankSum=1.648;QD=15.74;ReadPosRankSum=-1.733;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,40:46:84:757,84,0 chrIV 802915 . A G 716 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.479;DP=46;Dels=0.00;FS=16.128;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=5;MQRankSum=1.648;QD=15.57;ReadPosRankSum=-1.733;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,40:46:84:749,84,0 chrIV 803788 . T C 144.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.37;MQ0=101;MQRankSum=1.348;QD=1.05;ReadPosRankSum=1.636;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:97,40:137:24:177,24,0 chrIV 803792 . A G 145.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.51;MQ0=97;QD=1.08;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:92,42:134:24:178,24,0 chrIV 803795 . A G 145.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.70;MQ0=94;QD=1.10;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:89,43:132:24:178,24,0 chrIV 803804 . G A 168.01 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.91;MQ0=89;QD=1.30;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:82,46:129:27:201,27,0 chrIV 803809 . A C 170.01 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=8.76;MQ0=88;QD=1.34;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:81,46:127:27:203,27,0 chrIV 803880 . T C 39.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.67;MQ0=21;MQRankSum=-0.751;QD=1.33;ReadPosRankSum=0.751;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:1,28:30:9:72,9,0 chrIV 803973 . A G 482 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.296;DP=117;Dels=0.00;FS=24.190;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=10.33;MQ0=69;MQRankSum=2.759;QD=4.12;ReadPosRankSum=0.171;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:58,59:117:50:515,50,0 chrIV 803974 . G A 486 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.239;DP=122;Dels=0.00;FS=27.095;HaplotypeScore=4.8625;MLEAC=2;MLEAF=1.00;MQ=10.07;MQ0=69;MQRankSum=2.732;QD=3.98;ReadPosRankSum=0.284;SB=-6.584e-03 GT:AD:DP:GQ:PL 1/1:58,61:122:50:519,50,0 chrIV 803989 . G A 579 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.099;DP=130;Dels=0.00;FS=7.452;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=11.77;MQ0=66;MQRankSum=-0.558;QD=4.45;ReadPosRankSum=1.148;SB=-3.901e+01 GT:AD:DP:GQ:PL 1/1:55,73:130:46:612,46,0 chrIV 804011 . G A 1369 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.142;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.5431;MLEAC=2;MLEAF=1.00;MQ=18.83;MQ0=24;MQRankSum=-0.500;QD=11.41;ReadPosRankSum=0.859;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:5,114:120:99:1402,149,0 chrIV 804088 . A C 516 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.706;DP=37;Dels=0.00;FS=9.031;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=22.92;MQ0=13;MQRankSum=0.873;QD=13.95;ReadPosRankSum=0.524;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,32:37:63:549,63,0 chrIV 804179 . C T 42.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.362;DP=40;Dels=0.00;FS=11.549;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.73;MQ0=15;MQRankSum=2.996;QD=1.07;ReadPosRankSum=2.088;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:22,18:40:9:75,9,0 chrIV 804185 . T G 96.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.908;DP=36;Dels=0.00;FS=13.222;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.98;MQ0=10;MQRankSum=-0.578;QD=2.67;ReadPosRankSum=1.569;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:16,20:36:15:129,15,0 chrIV 804191 . C A 160.06 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.94;MQ0=0;QD=6.40;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:21:193,21,0 chrIV 804209 . C T 295 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.90;MQ0=0;QD=8.68;SB=-8.683e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:36:328,36,0 chrIV 804216 . C T 300.08 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.39;MQ0=0;MQRankSum=0.289;QD=8.34;ReadPosRankSum=1.540;SB=-9.218e-02 GT:AD:DP:GQ:PL 1/1:1,35:36:20:333,20,0 chrIV 804217 . A G 290.08 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.963;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.39;MQ0=0;MQRankSum=0.289;QD=8.06;ReadPosRankSum=1.636;SB=-9.218e-02 GT:AD:DP:GQ:PL 1/1:1,35:36:20:323,20,0 chrIV 804223 . A C 293.08 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.972;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.51;MQ0=1;MQRankSum=0.380;QD=6.98;ReadPosRankSum=1.056;SB=-9.250e-02 GT:AD:DP:GQ:PL 1/1:2,40:42:20:326,20,0 chrIV 804227 . T G 297.08 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.091;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.53;MQ0=1;MQRankSum=0.696;QD=7.07;ReadPosRankSum=1.846;SB=-9.250e-02 GT:AD:DP:GQ:PL 1/1:3,39:42:20:330,20,0 chrIV 804232 . G C 320.04 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.846;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.90;MQ0=1;MQRankSum=1.241;QD=7.62;ReadPosRankSum=1.059;SB=-4.982e-02 GT:AD:DP:GQ:PL 1/1:3,39:42:23:353,23,0 chrIV 804252 . C G 310.04 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.603;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=25.09;MQ0=4;MQRankSum=1.648;QD=8.86;ReadPosRankSum=-0.121;SB=-4.981e-02 GT:AD:DP:GQ:PL 1/1:6,29:35:23:343,23,0 chrIV 804253 . A G 298.08 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.040;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=25.09;MQ0=4;MQRankSum=1.648;QD=8.52;ReadPosRankSum=-0.362;SB=-9.248e-02 GT:AD:DP:GQ:PL 1/1:6,29:35:20:331,20,0 chrIV 804255 . A G 296.08 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.086;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=25.09;MQ0=4;MQRankSum=1.648;QD=8.46;ReadPosRankSum=-0.764;SB=-9.248e-02 GT:AD:DP:GQ:PL 1/1:6,29:35:20:329,20,0 chrIV 804259 . T C 309.04 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.207;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=24.86;MQ0=5;MQRankSum=1.674;QD=8.35;ReadPosRankSum=-1.051;SB=-4.982e-02 GT:AD:DP:GQ:PL 1/1:7,30:37:23:342,23,0 chrIV 804261 . A G 314.04 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.207;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.54;MQ0=6;MQRankSum=1.907;QD=8.26;ReadPosRankSum=-0.973;SB=-4.982e-02 GT:AD:DP:GQ:PL 1/1:8,30:38:23:347,23,0 chrIV 804264 . A G 322.04 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.752;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.22;MQ0=7;MQRankSum=1.907;QD=8.26;ReadPosRankSum=-0.428;SB=-4.982e-02 GT:AD:DP:GQ:PL 1/1:9,30:39:23:355,23,0 chrIV 804266 . T C 329.04 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.063;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.62;MQ0=9;MQRankSum=1.674;QD=8.03;ReadPosRankSum=-0.428;SB=-4.982e-02 GT:AD:DP:GQ:PL 1/1:11,30:41:23:362,23,0 chrIV 804282 . G A 182.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=21.00;MQ0=14;MQRankSum=2.239;QD=4.55;ReadPosRankSum=2.025;SB=0.162 GT:AD:DP:GQ:PL 0/1:18,22:40:35:212,0,35 chrIV 804294 . A G 96.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.287;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=18.77;MQ0=14;MQRankSum=2.639;QD=2.91;ReadPosRankSum=1.250;SB=-1.155e-03 GT:AD:DP:GQ:PL 0/1:19,14:33:44:126,0,44 chrIV 804301 . A T 74.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=18.53;MQ0=14;MQRankSum=2.261;QD=2.39;ReadPosRankSum=0.754;SB=-5.193e-03 GT:AD:DP:GQ:PL 0/1:20,11:31:47:104,0,47 chrIV 804304 . C T 67.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.286;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.89;MQ0=13;MQRankSum=2.633;QD=2.39;ReadPosRankSum=0.306;SB=0.046 GT:AD:DP:GQ:PL 0/1:18,10:28:31:97,0,31 chrIV 805850 . T C 83.26 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=0.88;SB=-7.527e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:15:116,15,0 chrIV 805851 . G A 134.06 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=1.41;SB=-7.707e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:21:167,21,0 chrIV 805854 . T C 176.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.27;MQ0=0;MQRankSum=-1.663;QD=1.76;ReadPosRankSum=1.697;SB=-7.504e+01 GT:AD:DP:GQ:PL 1/1:1,99:100:24:209,24,0 chrIV 805860 . G A 256 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.90;MQ0=0;QD=2.44;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,105:105:33:289,33,0 chrIV 806142 . G T 3772.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=24.03;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3772,408,0 chrIV 806233 . G A 4038.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=23.48;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4038,450,0 chrIV 806292 . G A 3116 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;QD=21.64;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3149,354,0 chrIV 806303 . T A 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=141;Dels=0.00;FS=2.905;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;MQRankSum=-2.101;QD=20.53;ReadPosRankSum=2.415;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2928,324,0 chrIV 806314 . C T 2891 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=22.24;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2924,321,0 chrIV 806407 . T C 3604.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.4250;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.68;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3604,408,0 chrIV 806513 . T C 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=205;Dels=0.00;FS=2.768;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.01;MQ0=0;MQRankSum=-1.360;QD=12.79;ReadPosRankSum=2.414;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:2655,306,0 chrIV 806514 . T C 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=207;Dels=0.00;FS=2.753;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.27;MQ0=0;MQRankSum=-2.165;QD=12.79;ReadPosRankSum=2.378;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:2681,312,0 chrIV 806528 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=6.2436;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;QD=13.82;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:3268,375,0 chrIV 806564 . C T 3749.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=15.43;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:3749,420,0 chrIV 806584 . T C 4113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.535;DP=259;Dels=0.00;FS=3.402;HaplotypeScore=7.0907;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=-0.611;QD=15.88;ReadPosRankSum=1.559;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:2,257:259:99:4113,456,0 chrIV 807091 . C T 7136.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.16;SB=-3.401e+03 GT:AD:DP:GQ:PL 1/1:0,319:322:99:7136,801,0 chrIV 807121 . A G 6509.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=15.9056;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.48;SB=-3.080e+03 GT:AD:DP:GQ:PL 1/1:0,300:303:99:6509,747,0 chrIV 807222 . T C 5262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.050;DP=237;Dels=0.00;FS=7.432;HaplotypeScore=18.9489;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.173;QD=22.20;ReadPosRankSum=4.110;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:6,231:237:99:5262,609,0 chrIV 807297 . C G 5892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.843;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=20.7854;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.147;QD=19.77;ReadPosRankSum=0.597;SB=-3.368e+03 GT:AD:DP:GQ:PL 1/1:1,295:298:99:5892,673,0 chrIV 807529 . A G 5043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=19.8525;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.832;QD=22.22;ReadPosRankSum=1.671;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:5043,576,0 chrIV 807738 . T C 2491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=3.842;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.397;QD=22.85;ReadPosRankSum=1.700;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2524,288,0 chrIV 807770 . A C 2104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.724;QD=19.13;ReadPosRankSum=1.669;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2137,246,0 chrIV 807771 . C T 2126 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=19.69;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2159,246,0 chrIV 807839 . C A 2730 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.37;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2763,312,0 chrIV 807901 . A G 2868 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.49;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2901,330,0 chrIV 807916 . T C 2580 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.55;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2613,297,0 chrIV 808031 . G A 3360.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=26.05;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3360,363,0 chrIV 808299 . C T 4519.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.1647;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.17;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4519,492,0 chrIV 808521 . C T 5016.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.12;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5016,552,0 chrIV 808649 . A G 4558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.504;DP=220;Dels=0.00;FS=7.960;HaplotypeScore=20.5057;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.213;QD=20.72;ReadPosRankSum=3.809;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:5,215:220:99:4558,519,0 chrIV 808808 . G A 4128.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.1717;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.45;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4128,447,0 chrIV 808940 . C A 4520.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.9726;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.66;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4520,495,0 chrIV 808996 . C G 4938.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.18;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,208:213:99:4938,555,0 chrIV 809028 . T C 5500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=256;Dels=0.00;FS=2.834;HaplotypeScore=19.5172;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.333;QD=21.48;ReadPosRankSum=2.430;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:2,252:256:99:5500,639,0 chrIV 809490 . C T 5540.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=20.9451;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.38;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5540,606,0 chrIV 809670 . C T 5984.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=19.6350;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.03;SB=-3.173e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5984,648,0 chrIV 810406 . C T 2482 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.36;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2515,285,0 chrIV 810443 . A C 2168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=103;Dels=0.00;FS=5.522;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;MQRankSum=-1.618;QD=21.05;ReadPosRankSum=2.932;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:3,100:103:99:2201,246,0 chrIV 810691 . T C 2636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=0.439;QD=19.53;ReadPosRankSum=1.680;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2669,306,0 chrIV 810702 . C T 2768 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.03;FS=0.000;HaplotypeScore=15.2863;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=20.06;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2801,306,0 chrIV 810811 . A G 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=61.52;MQ0=0;MQRankSum=1.555;QD=20.11;ReadPosRankSum=1.693;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3559,411,0 chrIV 810893 . A G 3224.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-1.096;QD=20.28;ReadPosRankSum=1.688;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3257,384,0 chrIV 811032 . A G 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=13.7129;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.944;QD=20.45;ReadPosRankSum=1.708;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2998,323,0 chrIV 811697 . T C 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=4.340;HaplotypeScore=13.7293;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.754;QD=23.05;ReadPosRankSum=1.626;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3780,429,0 chrIV 811787 . G A 2874 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.4398;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=19.82;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2907,330,0 chrIV 811810 . C T 2430 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.92;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2463,273,0 chrIV 811833 . A C 1980 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=15.59;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2013,228,0 chrIV 811992 . C T 2926 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=14.0772;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.05;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2959,324,0 chrIV 812940 . T C 1555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.132;QD=20.46;ReadPosRankSum=1.686;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1588,180,0 chrIV 813012 . T C 1497 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.44;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1530,174,0 chrIV 813092 . T G 1647 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.87;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1680,195,0 chrIV 813325 . G A 2968 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.37;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3001,339,0 chrIV 813436 . G A 3691.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.36;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3691,411,0 chrIV 813568 . G A 4718.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.25;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4718,537,0 chrIV 814114 . A G 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=156;Dels=0.00;FS=3.067;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.620;QD=22.46;ReadPosRankSum=1.687;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3504,402,0 chrIV 814275 . G A 4419.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.88;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4419,474,0 chrIV 814278 . C T 4436.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.43;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4436,480,0 chrIV 814586 . T C 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=3.500;HaplotypeScore=11.1154;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.115;QD=20.46;ReadPosRankSum=1.709;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3123,360,0 chrIV 815156 . T A 3169 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3202,354,0 chrIV 815495 . A G 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=3.869;HaplotypeScore=4.2495;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.170;QD=24.01;ReadPosRankSum=1.703;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2842,321,0 chrIV 815632 . G A 3940.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.42;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3940,417,0 chrIV 815666 . G A 3618.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.8471;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.47;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3618,408,0 chrIV 815797 . C G 4929.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.7199;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.40;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4929,564,0 chrIV 815851 . A G 5065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.767;DP=230;Dels=0.00;FS=10.681;HaplotypeScore=16.5308;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.009;QD=22.02;ReadPosRankSum=2.864;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:3,225:230:99:5065,573,0 chrIV 815880 . G A 5338.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.5978;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.81;SB=-2.971e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5338,573,0 chrIV 816494 . A G 3765.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2246;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.68;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3765,432,0 chrIV 816619 . G A 3169 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.99;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3202,348,0 chrIV 816808 . A C 2839 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.71;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2872,330,0 chrIV 817315 . G A 4966.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.9094;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.11;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4966,532,0 chrIV 817438 . G C 4631.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.0860;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.95;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4631,540,0 chrIV 818828 . T C 1590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.444;QD=21.78;ReadPosRankSum=1.636;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1623,183,0 chrIV 820472 . T C 3880.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3880,438,0 chrIV 822225 . G C 2363 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2396,273,0 chrIV 822347 . C T 3024 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.4962;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.99;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3057,327,0 chrIV 822518 . A G 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=144;Dels=0.00;FS=6.620;HaplotypeScore=8.9833;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.212;QD=23.14;ReadPosRankSum=2.398;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3332,375,0 chrIV 822572 . T A 2927 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2960,327,0 chrIV 822719 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=150;Dels=0.00;FS=3.188;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.339;QD=22.85;ReadPosRankSum=1.686;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3428,390,0 chrIV 823198 . T G 2558 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2591,291,0 chrIV 823234 . T C 2671 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.64;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2704,312,0 chrIV 825337 . T C 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.2283;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.652;QD=22.39;ReadPosRankSum=1.679;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2966,333,0 chrIV 826616 . C A 3093 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3126,351,0 chrIV 826861 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.47;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3528,399,0 chrIV 826983 . A G 4119.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.76;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4119,465,0 chrIV 827264 . T A 2710 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.07;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2743,306,0 chrIV 827442 . A T 2450 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.26;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2483,267,0 chrIV 827535 . G T 2925 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.04;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2958,324,0 chrIV 827581 . T C 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=122;Dels=0.00;FS=2.766;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.006;QD=21.43;ReadPosRankSum=2.328;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2647,303,0 chrIV 828276 . C T 2750 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.65;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2783,306,0 chrIV 828290 . G A 2878 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.14;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2911,312,0 chrIV 830143 . C T 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=116;Dels=0.00;FS=3.087;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.307;QD=23.25;ReadPosRankSum=-0.061;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2730,294,0 chrIV 830619 . A G 2164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=92;Dels=0.00;FS=3.632;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.539;QD=23.52;ReadPosRankSum=1.694;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,89:92:99:2197,249,0 chrIV 830754 . A T 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=3.656;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.915;QD=22.46;ReadPosRankSum=1.676;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2795,303,0 chrIV 831279 . A G 4125.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4125,471,0 chrIV 831381 . C A 4179.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.3741;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4179,465,0 chrIV 831797 . G A 1521 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1554,168,0 chrIV 831877 . T C 1978 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.00;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2011,225,0 chrIV 832199 . G A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.93;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4242,456,0 chrIV 832353 . G T 2788 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.50;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2821,315,0 chrIV 832597 . A G 1887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=3.434;HaplotypeScore=62.2018;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=1.370;QD=21.94;ReadPosRankSum=1.652;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1920,216,0 chrIV 832844 . T G 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.107;QD=23.27;ReadPosRankSum=1.706;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3151,360,0 chrIV 833068 . C T 3960.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3960,447,0 chrIV 833173 . G T 4590.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4590,513,0 chrIV 833459 . T C 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.1879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.194;QD=22.86;ReadPosRankSum=1.896;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4160,474,0 chrIV 833693 . A G 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.077;QD=22.52;ReadPosRankSum=1.666;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3581,405,0 chrIV 833772 . G T 3127 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3160,345,0 chrIV 834320 . T C 6408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.768;QD=21.95;ReadPosRankSum=-0.435;SB=-3.051e+03 GT:AD:DP:GQ:PL 1/1:1,291:292:99:6408,729,0 chrIV 834635 . A G 4127.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.7855;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.95;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4127,486,0 chrIV 834790 . C T 3088 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5910;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.06;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3121,348,0 chrIV 834800 . C T 2966 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.1321;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.42;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2999,327,0 chrIV 834899 . A G 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=174;Dels=0.00;FS=2.804;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.293;QD=21.72;ReadPosRankSum=2.421;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:3780,429,0 chrIV 835091 . A G 3565.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.4610;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.42;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3565,411,0 chrIV 835319 . T C 6536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=18.3089;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.804;QD=23.18;ReadPosRankSum=1.720;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:1,279:282:99:6536,735,0 chrIV 835831 . T C 4948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.0387;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.594;QD=21.99;ReadPosRankSum=1.701;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:4948,558,0 chrIV 835946 . C T 5867.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.10;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,250:254:99:5867,657,0 chrIV 836028 . G A 5401.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=15.1584;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.61;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:5401,600,0 chrIV 836148 . A G 7164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=329;Dels=0.00;FS=12.828;HaplotypeScore=19.5504;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.542;QD=21.78;ReadPosRankSum=3.366;SB=-3.792e+03 GT:AD:DP:GQ:PL 1/1:4,325:329:99:7164,816,0 chrIV 836356 . A G 7139.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=18.8031;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.59;SB=-3.602e+03 GT:AD:DP:GQ:PL 1/1:0,315:316:99:7139,819,0 chrIV 836436 . T C 6589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.287;DP=290;Dels=0.00;FS=2.391;HaplotypeScore=19.9094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.497;QD=22.72;ReadPosRankSum=3.407;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:4,285:290:99:6589,753,0 chrIV 836558 . T G 8426.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=369;Dels=0.00;FS=0.000;HaplotypeScore=23.1807;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.756;QD=22.83;ReadPosRankSum=1.713;SB=-3.517e+03 GT:AD:DP:GQ:PL 1/1:1,368:369:99:8426,960,0 chrIV 836867 . C T 7191.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=23.8187;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.05;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:0,312:312:99:7191,784,0 chrIV 837032 . T C 6668.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=10.4822;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.38;SB=-2.999e+03 GT:AD:DP:GQ:PL 1/1:0,296:298:99:6668,765,0 chrIV 837275 . T C 4384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=197;Dels=0.00;FS=10.886;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.434;QD=22.25;ReadPosRankSum=2.964;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:3,194:197:99:4384,516,0 chrIV 837527 . G A 4980.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.8807;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.60;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:4980,537,0 chrIV 837830 . C G 5441.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=8.9789;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.69;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:5441,624,0 chrIV 837953 . C T 3014 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.08;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3047,339,0 chrIV 838114 . T C 171.03 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=9.50;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:24:204,24,0 chrIV 838119 . G A 181.03 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=10.06;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:24:214,24,0 chrIV 838241 . C G 1504 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.1085;MLEAC=2;MLEAF=1.00;MQ=61.62;MQ0=0;QD=23.14;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1537,186,0 chrIV 838649 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=3.174;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.540;QD=20.42;ReadPosRankSum=1.689;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3308,375,0 chrIV 838745 . C T 4463.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.5398;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.56;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4463,492,0 chrIV 838835 . T C 4001.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.82;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4001,456,0 chrIV 839020 . T C 3856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=186;Dels=0.00;FS=6.527;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=1.433;QD=20.73;ReadPosRankSum=2.384;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:3856,438,0 chrIV 839045 . A T 3203 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.53;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3236,366,0 chrIV 839087 . T C 3561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=165;Dels=0.00;FS=6.544;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.756;QD=21.58;ReadPosRankSum=2.419;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3561,402,0 chrIV 839342 . A G 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=3.266;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.410;QD=23.42;ReadPosRankSum=1.707;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3279,372,0 chrIV 839558 . G A 3919.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=16.9036;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=25.12;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3919,429,0 chrIV 839672 . A T 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.724;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.076;QD=23.12;ReadPosRankSum=1.706;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3131,342,0 chrIV 840230 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.54;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2174,240,0 chrIV 840362 . C T 1557 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.22;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1590,177,0 chrIV 840549 . G C 1865 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.47;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,79:83:99:1898,216,0 chrIV 840598 . T C 2440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.076;QD=25.68;ReadPosRankSum=2.398;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2473,276,0 chrIV 840697 . T C 5719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=14.9093;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.463;QD=24.23;ReadPosRankSum=2.429;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:5719,636,0 chrIV 841000 . G A 4806.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=6.7250;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.15;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:4806,528,0 chrIV 841009 . T C 4580.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=18.69;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:4580,516,0 chrIV 841276 . T C 4765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=218;Dels=0.00;FS=3.012;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.745;QD=21.86;ReadPosRankSum=2.381;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:2,215:218:99:4765,540,0 chrIV 841738 . T C 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=1.044;QD=20.35;ReadPosRankSum=1.683;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2902,339,0 chrIV 841756 . A G 2746 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.07;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2779,315,0 chrIV 842028 . C T 4183.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.13;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4183,468,0 chrIV 842070 . A T 4652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=204;Dels=0.00;FS=3.011;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.536;QD=22.80;ReadPosRankSum=2.425;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4652,519,0 chrIV 842326 . A G 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=146;Dels=0.00;FS=3.522;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=0.818;QD=20.73;ReadPosRankSum=1.660;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3060,363,0 chrIV 842336 . A G 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.058;DP=158;Dels=0.00;FS=8.113;HaplotypeScore=9.3390;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=0.430;QD=19.73;ReadPosRankSum=2.418;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3151,339,0 chrIV 842380 . C T 3737.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.53;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3737,417,0 chrIV 842450 . G A 2521 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=18.40;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2554,288,0 chrIV 842455 . A G 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=3.658;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=0.293;QD=18.94;ReadPosRankSum=1.705;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2495,282,0 chrIV 842465 . T C 2279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.582;DP=124;Dels=0.00;FS=8.081;HaplotypeScore=4.6878;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=0.191;QD=18.38;ReadPosRankSum=3.773;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:5,119:124:99:2312,261,0 chrIV 842576 . C T 4034.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.0411;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.69;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4034,447,0 chrIV 843075 . A G 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=180;Dels=0.00;FS=2.629;HaplotypeScore=11.7131;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.757;QD=21.23;ReadPosRankSum=2.340;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3822,438,0 chrIV 843125 . G T 2898 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2931,324,0 chrIV 843581 . T C 739 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=34.91;MQ0=0;QD=12.96;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:90:772,90,0 chrIV 843608 . A G 867 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.28;MQ0=0;QD=14.21;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,60:61:99:900,108,0 chrIV 843647 . T C 1626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.190;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=-0.114;QD=21.39;ReadPosRankSum=2.320;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1659,189,0 chrIV 843832 . G A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=21.14;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3445,372,0 chrIV 843835 . T C 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=-0.247;QD=20.48;ReadPosRankSum=1.689;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3298,375,0 chrIV 843857 . C A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.81;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3408,390,0 chrIV 844040 . C T 5606.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.26;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5606,630,0 chrIV 844178 . C T 5327.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=12.3107;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.76;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5327,579,0 chrIV 844368 . C G 5069.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5069,582,0 chrIV 844646 . A T 5378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=241;Dels=0.00;FS=3.349;HaplotypeScore=17.2269;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.419;QD=22.32;ReadPosRankSum=1.689;SB=-2.834e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5378,594,0 chrIV 844694 . G C 5972.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=21.5704;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.66;SB=-3.443e+03 GT:AD:DP:GQ:PL 1/1:0,285:289:99:5972,696,0 chrIV 845065 . G A 3179 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.02;FS=0.000;HaplotypeScore=11.0873;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.23;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3212,351,0 chrIV 845136 . C T 2586 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=120.3258;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.74;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2619,288,0 chrIV 845236 . G A 2567 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.77;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2600,285,0 chrIV 845309 . T A 1836 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.10;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1869,207,0 chrIV 845391 . G C 3083 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.18;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3116,354,0 chrIV 845567 . T C 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=0.287;QD=21.39;ReadPosRankSum=1.632;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3028,339,0 chrIV 845568 . T C 2990 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.36;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3023,345,0 chrIV 845613 . G T 2695 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=18.33;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2728,312,0 chrIV 845739 . G A 2976 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.25;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3009,327,0 chrIV 845818 . T G 1951 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.76;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1984,225,0 chrIV 845959 . A C 2509 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2542,285,0 chrIV 846137 . T C 3331.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.66;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3331,378,0 chrIV 846477 . C T 3276.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.27;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3276,354,0 chrIV 846838 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.06;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1992,219,0 chrIV 846900 . T G 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.671;QD=20.98;ReadPosRankSum=1.671;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2425,288,0 chrIV 846972 . A G 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=111;Dels=0.00;FS=3.090;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.598;QD=21.91;ReadPosRankSum=1.701;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2465,279,0 chrIV 846996 . G A 2085 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.85;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2118,237,0 chrIV 847053 . A G 2083 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.22;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2116,240,0 chrIV 847524 . T C 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=189;Dels=0.00;FS=3.027;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-2.216;QD=19.81;ReadPosRankSum=2.411;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:3745,420,0 chrIV 847527 . T G 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-0.964;QD=18.98;ReadPosRankSum=1.695;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:3530,399,0 chrIV 847680 . T C 4550.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.21;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4550,513,0 chrIV 847796 . T A 3887.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.42;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3887,435,0 chrIV 848136 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=149;Dels=0.00;FS=2.600;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.138;QD=22.83;ReadPosRankSum=2.350;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3401,387,0 chrIV 848192 . T A 3025 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.21;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3058,330,0 chrIV 848940 . C A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.5416;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.59;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3682,402,0 chrIV 848977 . C G 4031.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.79;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,181:185:99:4031,462,0 chrIV 849204 . T C 2674 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.22;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2707,306,0 chrIV 849395 . C T 2178 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=98.2354;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=19.45;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2211,240,0 chrIV 849478 . A G 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.8533;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.733;QD=22.23;ReadPosRankSum=1.701;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2523,282,0 chrIV 849539 . C G 2040 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.8490;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=18.21;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2073,237,0 chrIV 849555 . C T 1990 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=17.46;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2023,228,0 chrIV 849735 . A G 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=3.049;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=1.150;QD=23.27;ReadPosRankSum=1.671;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2663,303,0 chrIV 849796 . T C 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.485;DP=112;Dels=0.00;FS=4.582;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-1.454;QD=21.99;ReadPosRankSum=0.000;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2496,260,0 chrIV 849849 . G A 2687 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.78;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2720,303,0 chrIV 850164 . A G 2048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.079;QD=23.27;ReadPosRankSum=1.693;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2081,234,0 chrIV 850484 . C T 3435.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=22.02;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3435,369,0 chrIV 850495 . T C 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=0.548;QD=19.85;ReadPosRankSum=1.710;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3109,363,0 chrIV 850508 . A T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.9102;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=20.52;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3283,357,0 chrIV 850697 . T C 4041.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.83;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4041,462,0 chrIV 850955 . G A 1940 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.48;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1973,225,0 chrIV 851004 . T C 2180 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5344;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.76;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2213,252,0 chrIV 851043 . T C 2282 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=18.86;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2315,258,0 chrIV 851114 . T A 1063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=98;Dels=0.01;FS=9.063;HaplotypeScore=31.4162;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=1.621;QD=10.85;ReadPosRankSum=0.634;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:7,90:97:66:1096,66,0 chrIV 851221 . T C 3146 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7065;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.65;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3179,366,0 chrIV 851413 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=24.39;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3536,399,0 chrIV 851427 . C T 3385.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.67;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3385,366,0 chrIV 851792 . A G 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.445;QD=20.88;ReadPosRankSum=1.709;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3165,360,0 chrIV 851816 . C T 3689.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.49;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3689,405,0 chrIV 851855 . G A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.87;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3423,375,0 chrIV 851875 . A G 2679 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.14;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2712,306,0 chrIV 851927 . C T 2325 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.22;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2358,258,0 chrIV 852118 . G C 2592 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.60;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2625,300,0 chrIV 852619 . T C 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=138;Dels=0.00;FS=7.131;HaplotypeScore=12.0327;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.436;QD=22.00;ReadPosRankSum=2.396;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3069,342,0 chrIV 852794 . C T 4594.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.44;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4594,510,0 chrIV 852904 . G A 3915.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.3263;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3915,426,0 chrIV 853192 . G A 3631.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.14;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3631,396,0 chrIV 853448 . A C 2593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.776;QD=21.97;ReadPosRankSum=1.702;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2626,297,0 chrIV 853808 . C G 2999 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.25;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3032,348,0 chrIV 853958 . A G 2259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=111;Dels=0.00;FS=2.584;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-0.100;QD=20.35;ReadPosRankSum=2.361;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2292,270,0 chrIV 853984 . T C 1852 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=19.29;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1885,213,0 chrIV 853985 . A C 1829 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=19.46;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1862,210,0 chrIV 853996 . T C 2072 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=19.19;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2105,237,0 chrIV 854335 . C T 2634 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.11;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2667,288,0 chrIV 854367 . C T 2977 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.73;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3010,327,0 chrIV 854519 . T C 2467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.990;QD=22.03;ReadPosRankSum=1.701;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2500,282,0 chrIV 855154 . G A 3077 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3110,348,0 chrIV 855230 . A G 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=154;Dels=0.00;FS=7.417;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.172;QD=21.97;ReadPosRankSum=2.401;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:2,150:154:99:3383,399,0 chrIV 855322 . G C 3162 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3195,366,0 chrIV 855587 . T C 3459.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4398;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.75;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3459,399,0 chrIV 855709 . C T 3795.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.08;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3795,423,0 chrIV 855748 . G A 3589.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.05;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3589,399,0 chrIV 855817 . T C 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.371;DP=178;Dels=0.00;FS=8.231;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.821;QD=22.35;ReadPosRankSum=3.410;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:4,173:178:99:3978,459,0 chrIV 855848 . A G 4550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=3.628;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.548;QD=23.21;ReadPosRankSum=1.644;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4550,510,0 chrIV 856201 . G A 3826.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.91;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3826,438,0 chrIV 856278 . A T 3838.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.0027;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.56;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3838,423,0 chrIV 856679 . A G 4531.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.10;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4531,519,0 chrIV 856876 . T C 3457.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.4981;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.59;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3457,396,0 chrIV 857609 . C A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=22.13;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3828,426,0 chrIV 857627 . A C 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=3.812;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=-1.713;QD=20.12;ReadPosRankSum=1.713;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:3621,417,0 chrIV 857630 . T C 3224.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.163;DP=180;Dels=0.00;FS=2.843;HaplotypeScore=5.0320;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=0.484;QD=17.91;ReadPosRankSum=2.395;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3257,369,0 chrIV 858496 . T A 4048.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.1357;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.26;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4048,438,0 chrIV 858787 . C G 3161 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.50;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3194,366,0 chrIV 858862 . C T 3159 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3192,363,0 chrIV 859191 . T G 4146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=224;Dels=0.00;FS=9.662;HaplotypeScore=17.0130;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.405;QD=18.51;ReadPosRankSum=2.383;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:2,220:224:99:4146,474,0 chrIV 859510 . A G 3556.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.4810;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=18.52;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3556,417,0 chrIV 859708 . G A 3531.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3531,387,0 chrIV 859980 . A G 3476.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3476,405,0 chrIV 860353 . C T 4305.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=16.8492;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.40;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4305,474,0 chrIV 860602 . G A 5200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=13.4481;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=1.086;QD=21.76;ReadPosRankSum=1.130;SB=-2.886e+03 GT:AD:DP:GQ:PL 1/1:1,236:239:99:5200,585,0 chrIV 860620 . C T 4966.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.88;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:4966,555,0 chrIV 860671 . A G 4499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=227;Dels=0.00;FS=7.463;HaplotypeScore=8.0059;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-1.711;QD=19.82;ReadPosRankSum=2.428;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:2,224:227:99:4499,525,0 chrIV 860689 . C T 4697.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=20.25;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,228:232:99:4697,519,0 chrIV 860755 . C T 3996.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.1543;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=18.67;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:3996,444,0 chrIV 860764 . T C 4090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=213;Dels=0.00;FS=6.251;HaplotypeScore=5.7722;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.390;QD=19.20;ReadPosRankSum=2.356;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:2,209:213:99:4090,471,0 chrIV 861202 . G C 3139 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.99;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3172,360,0 chrIV 861257 . A G 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.091;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.0677;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.283;QD=21.42;ReadPosRankSum=0.706;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3492,373,0 chrIV 861292 . C T 4602.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.9800;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.78;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4602,510,0 chrIV 861707 . G A 2586 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.49;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2619,288,0 chrIV 862580 . T G 2571 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.79;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2604,297,0 chrIV 862602 . T C 2494 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.47;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2527,282,0 chrIV 862854 . T C 2724 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.89;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2757,312,0 chrIV 863028 . C T 2864 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.0177;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.03;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2897,315,0 chrIV 863455 . G A 3884.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.71;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3884,432,0 chrIV 863555 . A G 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=163;Dels=0.00;FS=7.653;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.633;QD=23.55;ReadPosRankSum=2.419;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:3839,429,0 chrIV 863643 . T C 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.194;DP=141;Dels=0.00;FS=8.917;HaplotypeScore=9.3312;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=0.863;QD=20.19;ReadPosRankSum=3.269;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:4,135:141:99:2880,330,0 chrIV 863664 . T C 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=150;Dels=0.00;FS=3.040;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=0.860;QD=20.03;ReadPosRankSum=2.417;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3038,348,0 chrIV 863685 . G A 3701.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.27;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3701,396,0 chrIV 863808 . T C 3433.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.15;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3433,390,0 chrIV 863843 . G A 3418.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.94;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3418,369,0 chrIV 864225 . G A 5126.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=19.0319;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.19;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5126,558,0 chrIV 864550 . T C 4401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=201;Dels=0.00;FS=6.087;HaplotypeScore=13.0189;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.227;QD=21.90;ReadPosRankSum=2.884;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:3,196:201:99:4401,510,0 chrIV 864669 . G T 4236.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=22.90;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4236,474,0 chrIV 864686 . A G 3394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.799;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.1329;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.237;QD=19.96;ReadPosRankSum=3.799;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:5,165:170:99:3394,393,0 chrIV 864727 . A G 1790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.4918;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.485;QD=17.90;ReadPosRankSum=1.697;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1823,210,0 chrIV 864978 . G A 105.26 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=4.58;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:15:138,15,0 chrIV 865057 . C T 2420 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.03;FS=0.000;HaplotypeScore=20.8873;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2453,267,0 chrIV 865291 . C T 4420.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.5835;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.99;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4420,489,0 chrIV 865399 . A G 4549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=212;Dels=0.00;FS=4.073;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.471;QD=21.46;ReadPosRankSum=1.699;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4549,525,0 chrIV 865489 . A G 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.9777;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-1.358;QD=20.77;ReadPosRankSum=1.673;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,175:179:99:3717,429,0 chrIV 865525 . T C 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.639;DP=182;Dels=0.00;FS=17.642;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;MQRankSum=-1.593;QD=17.59;ReadPosRankSum=3.734;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:5,175:182:99:3234,366,0 chrIV 865546 . T C 3425.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=17.39;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3425,387,0 chrIV 865557 . G A 3823.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=18.03;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:3823,414,0 chrIV 865573 . T C 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=217;Dels=0.00;FS=4.020;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-0.790;QD=16.77;ReadPosRankSum=1.684;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:3639,417,0 chrIV 865993 . T C 5129.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=18.3541;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.68;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5129,603,0 chrIV 866129 . C T 5706.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=4.0587;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.12;SB=-3.058e+03 GT:AD:DP:GQ:PL 1/1:0,256:258:99:5706,619,0 chrIV 866146 . A G 5257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.218;DP=262;Dels=0.00;FS=9.119;HaplotypeScore=12.7924;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.172;QD=20.06;ReadPosRankSum=3.353;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:4,254:262:99:5257,609,0 chrIV 866195 . T G 5380.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.43;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:0,248:251:99:5380,609,0 chrIV 866436 . T C 5236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=21.2944;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.268;QD=21.91;ReadPosRankSum=1.718;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:5236,600,0 chrIV 866998 . T C 5826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=259;Dels=0.00;FS=5.441;HaplotypeScore=23.7422;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.706;QD=22.49;ReadPosRankSum=2.973;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:3,254:259:99:5826,672,0 chrIV 868086 . A G 4326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.119;DP=185;Dels=0.00;FS=19.762;HaplotypeScore=18.0078;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=-0.539;QD=23.38;ReadPosRankSum=4.158;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:6,179:185:99:4326,492,0 chrIV 868348 . G T 4698.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=18.1210;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4698,516,0 chrIV 868578 . G A 3942.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.86;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3942,444,0 chrIV 869149 . G T 3908.01 SnpCluster AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=19.74;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3908,423,0 chrIV 869151 . C A 3685.01 SnpCluster AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=18.52;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3685,420,0 chrIV 869159 . C T 3600.01 SnpCluster AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=17.73;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3600,405,0 chrIV 869369 . C T 6215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=246;Dels=0.00;FS=3.064;HaplotypeScore=11.6113;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.035;QD=25.26;ReadPosRankSum=0.488;SB=-3.249e+03 GT:AD:DP:GQ:PL 1/1:1,245:246:99:6215,673,0 chrIV 869558 . C T 3837.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3837,426,0 chrIV 869984 . G A 2956 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2989,327,0 chrIV 870087 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.10;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3511,384,0 chrIV 870200 . G C 3581.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.32;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3581,414,0 chrIV 870699 . A T 1734 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.5089;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=18.85;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1767,195,0 chrIV 870727 . A C 2595 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.3733;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=19.96;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,125:130:99:2628,312,0 chrIV 870749 . T C 3285.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.66;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3285,384,0 chrIV 870787 . T C 3094 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6014;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.42;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3127,351,0 chrIV 870917 . T C 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=148;Dels=0.01;FS=11.160;HaplotypeScore=11.0076;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.075;QD=20.71;ReadPosRankSum=2.952;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3098,357,0 chrIV 871373 . G A 3813.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.6094;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.68;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3813,426,0 chrIV 871483 . G T 2187 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.52;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2220,243,0 chrIV 871540 . C T 2231 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.54;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2264,252,0 chrIV 871554 . G C 1850 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.02;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1883,213,0 chrIV 871619 . A G 332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.333;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=7.0140;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-0.800;QD=12.77;ReadPosRankSum=1.600;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:1,25:26:42:365,42,0 chrIV 871635 . A G 148.06 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=12.34;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:21:181,21,0 chrIV 871656 . G A 44.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=7.50;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:77,9,0 chrIV 871657 . A T 46.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=7.83;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:79,9,0 chrIV 871688 . C T 309 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.60;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:39:342,39,0 chrIV 871796 . C T 411 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.71;MQ0=0;QD=22.83;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:48:444,48,0 chrIV 871806 . G A 217 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=0;QD=16.69;SB=-4.900e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:30:250,30,0 chrIV 877864 . G A 367 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=0;QD=6.55;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:45:400,45,0 chrIV 878016 . A G 1785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.960;DP=87;Dels=0.00;FS=19.656;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.25;MQ0=0;MQRankSum=1.439;QD=20.52;ReadPosRankSum=2.012;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:5,81:87:99:1818,141,0 chrIV 878048 . A T 2476 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.13;MQ0=0;QD=24.51;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2509,273,0 chrIV 878186 . A T 2029 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=22.05;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2062,222,0 chrIV 878246 . C A 1207 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=21.18;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1240,132,0 chrIV 878261 . C T 1043 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=0;QD=20.45;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1076,117,0 chrIV 878287 . A T 877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.01;MQ0=0;MQRankSum=-1.536;QD=15.95;ReadPosRankSum=1.602;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:910,108,0 chrIV 884248 . C G 175.03 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.43;MQ0=0;QD=11.67;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:208,24,0 chrIV 884268 . G C 408 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.77;MQ0=0;QD=17.00;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:51:441,51,0 chrIV 884320 . C T 1786 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=20.53;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1819,198,0 chrIV 884517 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.0470;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.48;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1966,216,0 chrIV 884597 . G A 400 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=4.60;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,82:87:48:433,48,0 chrIV 884657 . G A 2698 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.76;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2731,294,0 chrIV 884761 . T A 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.5123;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-1.021;QD=25.07;ReadPosRankSum=1.640;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3786,420,0 chrIV 885302 . T C 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.020;QD=22.37;ReadPosRankSum=1.708;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3209,366,0 chrIV 885407 . G A 4572.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.0639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4572,492,0 chrIV 885734 . C T 5252.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=19.1475;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.34;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5252,576,0 chrIV 885908 . A G 4374.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.13;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4374,518,0 chrIV 886178 . A G 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=140;Dels=0.00;FS=2.869;HaplotypeScore=13.5521;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.976;QD=20.78;ReadPosRankSum=2.415;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2942,342,0 chrIV 886289 . A G 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.253;QD=20.98;ReadPosRankSum=1.389;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4049,450,0 chrIV 887044 . A G 1179 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=58.7792;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=17.60;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1212,144,0 chrIV 887192 . A C 2116 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.51;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2149,246,0 chrIV 887448 . T C 3815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=3.745;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.636;QD=21.19;ReadPosRankSum=1.713;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3815,432,0 chrIV 888086 . G T 5636.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=12.7880;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=21.19;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:5636,639,0 chrIV 888150 . T C 5227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=237;Dels=0.00;FS=9.600;HaplotypeScore=15.7184;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=0.654;QD=22.05;ReadPosRankSum=2.970;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:3,232:237:99:5227,597,0 chrIV 888227 . T C 4227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=204;Dels=0.00;FS=4.324;HaplotypeScore=9.6178;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=0.759;QD=20.72;ReadPosRankSum=1.681;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4227,483,0 chrIV 888233 . C T 4202.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.2861;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=20.70;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4202,471,0 chrIV 888293 . T C 3704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=181;Dels=0.00;FS=6.858;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.321;QD=20.46;ReadPosRankSum=2.409;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3704,423,0 chrIV 888452 . T G 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.8603;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.905;QD=20.60;ReadPosRankSum=1.713;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3729,435,0 chrIV 888461 . A G 3547.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=19.71;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3547,408,0 chrIV 888488 . C T 3545.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.98;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3545,387,0 chrIV 888611 . A G 3711.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.58;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3711,420,0 chrIV 888651 . G A 4353.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.7243;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.05;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4353,471,0 chrIV 888734 . C T 3968.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0924;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.76;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3968,432,0 chrIV 888770 . T C 2767 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.5821;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.79;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2800,315,0 chrIV 888797 . A T 2275 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.06;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2308,261,0 chrIV 889122 . T C 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.109;QD=22.07;ReadPosRankSum=1.693;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:2019,231,0 chrIV 889358 . C T 3362.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.12;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,147:152:99:3362,363,0 chrIV 889560 . T A 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=134;Dels=0.00;FS=14.121;HaplotypeScore=4.2859;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-1.730;QD=21.75;ReadPosRankSum=2.948;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:2948,321,0 chrIV 889568 . T C 2412 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=19.30;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2445,288,0 chrIV 889599 . C T 3078 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=21.52;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3111,336,0 chrIV 889739 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.4578;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.18;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3530,390,0 chrIV 890069 . T C 5461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=274;Dels=0.00;FS=3.828;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;MQRankSum=1.538;QD=19.93;ReadPosRankSum=1.719;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:1,269:274:99:5461,609,0 chrIV 890071 . T C 5155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=272;Dels=0.00;FS=3.995;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;MQRankSum=-0.850;QD=18.95;ReadPosRankSum=1.681;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:1,271:272:99:5155,603,0 chrIV 890091 . C T 4720.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=1.9226;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=18.51;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:4720,516,0 chrIV 890096 . A T 4556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.412;DP=249;Dels=0.00;FS=5.208;HaplotypeScore=4.6610;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;MQRankSum=1.585;QD=18.30;ReadPosRankSum=3.412;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:4,245:249:99:4556,489,0 chrIV 890129 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=0.745;QD=16.07;ReadPosRankSum=2.428;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:3695,426,0 chrIV 890461 . C G 6426.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=17.1727;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.16;SB=-3.239e+03 GT:AD:DP:GQ:PL 1/1:0,288:290:99:6426,758,0 chrIV 891115 . G A 6284.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=12.7102;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.85;SB=-3.034e+03 GT:AD:DP:GQ:PL 1/1:0,272:275:99:6284,687,0 chrIV 891315 . C T 5050.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=17.4908;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.82;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5050,555,0 chrIV 892194 . A G 2293 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.11;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2326,273,0 chrIV 892489 . A T 1456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-1.563;QD=16.74;ReadPosRankSum=1.690;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1489,165,0 chrIV 892662 . G C 522 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=17.40;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:63:555,63,0 chrIV 892764 . C T 1018 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1051,117,0 chrIV 893039 . A G 4095.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.7522;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.02;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4095,471,0 chrIV 893390 . T C 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.00;FS=6.667;HaplotypeScore=7.0093;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;MQRankSum=-0.023;QD=16.64;ReadPosRankSum=2.343;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:2745,312,0 chrIV 893393 . C T 2760 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.03;FS=0.000;HaplotypeScore=12.2090;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=17.14;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2793,303,0 chrIV 893427 . A G 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=172;Dels=0.00;FS=3.722;HaplotypeScore=7.5888;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;MQRankSum=-1.591;QD=14.02;ReadPosRankSum=1.712;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:2445,276,0 chrIV 893441 . T C 1804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.062;DP=183;Dels=0.00;FS=10.623;HaplotypeScore=9.8849;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;MQRankSum=-1.635;QD=9.86;ReadPosRankSum=4.086;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:6,176:183:99:1837,210,0 chrIV 893442 . C T 1837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.184;DP=184;Dels=0.00;FS=5.254;HaplotypeScore=9.1509;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;MQRankSum=-2.235;QD=9.98;ReadPosRankSum=3.099;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:4,180:184:99:1870,207,0 chrIV 893751 . C G 4036.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.2630;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.82;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4036,471,0 chrIV 893888 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=3.654;HaplotypeScore=7.4273;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.338;QD=22.67;ReadPosRankSum=1.608;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3786,429,0 chrIV 893934 . T C 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=162;Dels=0.00;FS=7.396;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-1.229;QD=18.46;ReadPosRankSum=2.358;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3024,342,0 chrIV 893952 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.935;DP=180;Dels=0.00;FS=14.959;HaplotypeScore=9.5968;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-0.409;QD=19.58;ReadPosRankSum=3.725;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:6,171:180:99:3524,399,0 chrIV 893982 . A G 4248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=195;Dels=0.00;FS=7.663;HaplotypeScore=13.4945;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.409;QD=21.78;ReadPosRankSum=2.412;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4248,489,0 chrIV 894480 . T C 4297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=209;Dels=0.00;FS=8.709;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.110;QD=20.56;ReadPosRankSum=2.414;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4297,486,0 chrIV 894714 . C A 2626 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2659,294,0 chrIV 894791 . T G 2480 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.57;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2513,294,0 chrIV 895397 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.2701;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.012;QD=22.71;ReadPosRankSum=1.686;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3406,384,0 chrIV 895472 . A G 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=156;Dels=0.00;FS=5.709;HaplotypeScore=10.8176;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=0.059;QD=23.88;ReadPosRankSum=2.928;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:3,150:156:99:3726,423,0 chrIV 895550 . T A 2500 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=21.01;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2533,279,0 chrIV 895556 . T C 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=-1.165;QD=17.92;ReadPosRankSum=1.702;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2147,246,0 chrIV 895577 . A T 2376 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=19.48;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2409,264,0 chrIV 895607 . T C 2090 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=14.32;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2123,249,0 chrIV 895616 . A G 2008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=3.129;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=-0.234;QD=13.48;ReadPosRankSum=1.709;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2041,240,0 chrIV 895673 . T C 2616 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.2088;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=17.32;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2649,312,0 chrIV 895712 . G T 3678.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.58;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3678,405,0 chrIV 895993 . C T 2331 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.45;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2364,258,0 chrIV 896024 . T C 1973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.232;QD=18.97;ReadPosRankSum=1.699;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2006,234,0 chrIV 896117 . G A 2826 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2859,324,0 chrIV 896285 . C T 2925 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.16;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2958,327,0 chrIV 896319 . C T 3459.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.1905;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.02;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3459,378,0 chrIV 896377 . T C 3368.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.39;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3368,378,0 chrIV 896660 . A G 2292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.580;QD=20.11;ReadPosRankSum=1.702;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2325,270,0 chrIV 896774 . T G 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.8116;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.270;QD=21.72;ReadPosRankSum=1.710;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3367,381,0 chrIV 897167 . T C 4078.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.5866;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.743;QD=22.16;ReadPosRankSum=1.825;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:4078,468,0 chrIV 897260 . A G 4175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=187;Dels=0.00;FS=3.034;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.535;QD=22.33;ReadPosRankSum=2.397;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:4175,477,0 chrIV 897287 . G A 4215.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.8319;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.65;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4215,453,0 chrIV 897434 . A T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.22;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3599,411,0 chrIV 897572 . T G 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=120;Dels=0.00;FS=7.312;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.076;QD=20.99;ReadPosRankSum=2.347;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2552,300,0 chrIV 897959 . T C 2375 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.13;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2408,279,0 chrIV 898087 . T C 1658 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.7047;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.82;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1691,198,0 chrIV 898185 . G A 2127 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=21.27;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2160,234,0 chrIV 898191 . G A 2101 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.80;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2134,231,0 chrIV 898376 . C T 2381 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.05;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2414,261,0 chrIV 898406 . T G 2533 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.84;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2566,294,0 chrIV 898456 . C T 2571 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.55;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2604,285,0 chrIV 898763 . T C 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=132;Dels=0.00;FS=3.397;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=0.309;QD=17.77;ReadPosRankSum=1.678;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,128:132:99:2378,279,0 chrIV 898769 . G T 2410 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=19.28;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2443,264,0 chrIV 898787 . T C 2766 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=18.20;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2799,318,0 chrIV 898970 . C T 3878.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.1805;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.22;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3878,420,0 chrIV 899014 . G A 3752.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.60;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3752,420,0 chrIV 899107 . C T 3602.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.80;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3602,399,0 chrIV 899129 . G A 3593.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.33;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3593,387,0 chrIV 899304 . G A 2855 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.99;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2888,312,0 chrIV 899488 . C T 1302 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.02;FS=0.000;HaplotypeScore=4.7556;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=15.69;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1335,153,0 chrIV 899489 . T A 1338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.208;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.6113;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.207;QD=16.12;ReadPosRankSum=1.622;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1371,153,0 chrIV 899680 . C T 2130 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.93;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2163,237,0 chrIV 900294 . C T 3856.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.0426;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.25;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3856,417,0 chrIV 900626 . G A 4099.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.90;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4099,447,0 chrIV 900880 . A G 2915 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.2524;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.88;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2948,348,0 chrIV 901041 . T C 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.4836;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.714;QD=21.19;ReadPosRankSum=1.667;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3411,384,0 chrIV 901107 . T A 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.956;DP=163;Dels=0.00;FS=9.883;HaplotypeScore=9.3869;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.956;QD=22.36;ReadPosRankSum=2.880;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3645,393,0 chrIV 901216 . T C 3347.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=4.9910;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.28;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3347,381,0 chrIV 901226 . C T 3596.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.7779;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.15;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3596,387,0 chrIV 901288 . C G 3134 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.75;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3167,366,0 chrIV 901462 . G A 3517.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.8046;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.84;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3517,384,0 chrIV 901517 . T C 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=188;Dels=0.00;FS=3.033;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.635;QD=19.92;ReadPosRankSum=2.397;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:3745,426,0 chrIV 901599 . T G 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=176;Dels=0.00;FS=2.871;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.925;QD=20.23;ReadPosRankSum=2.365;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:2,172:176:99:3560,396,0 chrIV 901798 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.437;DP=158;Dels=0.00;FS=11.221;HaplotypeScore=15.9716;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.897;QD=20.44;ReadPosRankSum=3.675;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:5,153:158:99:3264,375,0 chrIV 901917 . C T 3515.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.08;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3515,381,0 chrIV 902051 . G T 2915 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.82;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2948,318,0 chrIV 902065 . A C 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-0.013;QD=19.21;ReadPosRankSum=1.681;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2627,297,0 chrIV 902156 . T C 3356.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.9814;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.65;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3356,381,0 chrIV 902257 . G A 3207 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.0885;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.12;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3240,363,0 chrIV 902350 . G A 3681.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.15;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3681,399,0 chrIV 902361 . T C 3191 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=21.42;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3224,366,0 chrIV 902688 . G A 3482.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3482,390,0 chrIV 902746 . T C 4306.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4306,501,0 chrIV 902824 . A G 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=152;Dels=0.00;FS=6.098;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.788;QD=19.10;ReadPosRankSum=2.941;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:2936,336,0 chrIV 902880 . T C 3003 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.4855;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.77;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3036,345,0 chrIV 903517 . T C 4007.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.6149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4007,453,0 chrIV 903611 . C G 2665 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.82;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2698,309,0 chrIV 903976 . T C 3212.98 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.59;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3246,372,0 chrIV 904095 . G T 3873.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.62;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3873,429,0 chrIV 904531 . C A 2061 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.44;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2094,237,0 chrIV 904648 . A T 3023 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=23.80;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3056,342,0 chrIV 904810 . G T 2969 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=17.78;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3002,330,0 chrIV 904855 . A G 2732 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=175;Dels=0.00;FS=6.939;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.14;MQ0=0;MQRankSum=-0.190;QD=15.61;ReadPosRankSum=2.407;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:2765,324,0 chrIV 904859 . T C 2748 SnpCluster AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=15.61;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:2781,312,0 chrIV 904865 . T A 2805 SnpCluster AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=15.67;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:2838,309,0 chrIV 904871 . C T 2675 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=15.55;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2708,297,0 chrIV 905063 . A G 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.732;DP=139;Dels=0.00;FS=2.581;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;MQRankSum=-0.804;QD=20.09;ReadPosRankSum=2.950;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2825,321,0 chrIV 905128 . A T 2484 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=20.87;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2517,276,0 chrIV 905132 . T A 2337 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.47;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2370,261,0 chrIV 905602 . T C 2079 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0570;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=18.08;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2112,243,0 chrIV 905609 . A G 1951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=1.242;QD=18.23;ReadPosRankSum=1.699;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:1984,225,0 chrIV 906063 . T C 2737 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.89;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2770,315,0 chrIV 906101 . A G 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.523;QD=21.56;ReadPosRankSum=1.672;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2556,294,0 chrIV 906712 . T C 4452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=188;Dels=0.00;FS=2.949;HaplotypeScore=12.1732;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.786;QD=23.68;ReadPosRankSum=2.397;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:2,184:188:99:4452,504,0 chrIV 906875 . A T 2893 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=0.218;QD=21.27;ReadPosRankSum=1.629;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2926,318,0 chrIV 906876 . C T 2873 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=21.28;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2906,318,0 chrIV 906877 . T C 2820 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=21.04;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2853,324,0 chrIV 906931 . T G 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=4.299;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-1.568;QD=20.18;ReadPosRankSum=1.685;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3060,342,0 chrIV 907064 . T C 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.184;QD=21.46;ReadPosRankSum=1.601;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,131:135:99:2930,336,0 chrIV 907098 . A T 3150 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=22.50;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3183,345,0 chrIV 907102 . G A 3048 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=21.62;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3081,330,0 chrIV 907227 . G A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3385,381,0 chrIV 907286 . A G 4573.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.8511;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.64;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4573,525,0 chrIV 907616 . G A 4737.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=17.0859;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.00;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4737,513,0 chrIV 907686 . C T 3695.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.39;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3695,411,0 chrIV 907779 . A G 3201 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=20.92;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3234,363,0 chrIV 907782 . C T 3220.05 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.47;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3253,351,0 chrIV 907830 . T G 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=149;Dels=0.00;FS=10.238;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-1.157;QD=19.26;ReadPosRankSum=2.789;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:2902,324,0 chrIV 907845 . A T 3189 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.98;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3222,354,0 chrIV 907920 . A G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=19.8442;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.42;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3349,381,0 chrIV 908202 . A G 3513.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.6016;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.23;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3513,396,0 chrIV 908478 . T C 4306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.2796;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.240;QD=23.53;ReadPosRankSum=1.694;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4306,486,0 chrIV 908567 . C T 3443.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=24.08;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3443,375,0 chrIV 908590 . A G 3029 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=20.19;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3062,351,0 chrIV 908594 . C T 3016 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=20.38;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3049,339,0 chrIV 908649 . A G 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=154;Dels=0.00;FS=2.663;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=1.221;QD=18.83;ReadPosRankSum=2.418;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:2933,339,0 chrIV 908658 . T G 2830 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=18.50;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2863,330,0 chrIV 908760 . A G 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8223;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=1.386;QD=21.65;ReadPosRankSum=1.705;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2869,321,0 chrIV 908781 . G A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.91;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3437,375,0 chrIV 908872 . G A 3311.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.93;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3311,378,0 chrIV 908967 . C T 3664.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7101;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.04;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3664,399,0 chrIV 909366 . C T 4293.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4293,474,0 chrIV 909447 . T A 4385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=200;Dels=0.00;FS=3.398;HaplotypeScore=24.1027;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.235;QD=21.93;ReadPosRankSum=1.715;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4385,483,0 chrIV 909658 . T C 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.193;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.5759;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.706;QD=20.01;ReadPosRankSum=1.681;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2755,312,0 chrIV 909908 . C A 2818 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.6376;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.50;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2851,312,0 chrIV 910025 . A G 4436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=218;Dels=0.00;FS=11.407;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.384;QD=20.35;ReadPosRankSum=2.949;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:3,214:218:99:4436,516,0 chrIV 910427 . A T 2032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=102;Dels=0.00;FS=2.991;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.440;QD=19.92;ReadPosRankSum=2.351;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2065,225,0 chrIV 910506 . T C 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.718;QD=21.09;ReadPosRankSum=-1.394;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2627,297,0 chrIV 910688 . T C 2082 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.46;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2115,246,0 chrIV 910761 . T C 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=4.288;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.238;QD=23.06;ReadPosRankSum=1.664;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2408,273,0 chrIV 910905 . G A 2989 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.17;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3022,330,0 chrIV 910968 . C T 3593.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.18;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3593,399,0 chrIV 911274 . T C 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=165;Dels=0.00;FS=9.385;HaplotypeScore=7.2557;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;MQRankSum=-0.592;QD=17.88;ReadPosRankSum=2.420;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:2984,342,0 chrIV 911326 . G A 2235 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5518;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=15.41;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2268,252,0 chrIV 911330 . T C 2079 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;MQRankSum=-0.650;QD=14.24;ReadPosRankSum=1.708;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:2112,243,0 chrIV 911333 . G A 2173 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5389;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=14.78;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2206,240,0 chrIV 911343 . C T 1940 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6834;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=12.85;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:1973,216,0 chrIV 911472 . A C 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=4.320;HaplotypeScore=4.6447;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-1.732;QD=19.59;ReadPosRankSum=1.661;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2912,339,0 chrIV 911579 . A G 4186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=191;Dels=0.00;FS=5.277;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.888;QD=21.92;ReadPosRankSum=2.899;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:4,186:191:99:4186,477,0 chrIV 911858 . C T 2729 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=23.73;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2762,297,0 chrIV 911886 . T C 2293 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=101.0989;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=20.11;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2326,261,0 chrIV 911925 . G T 2385 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.02;FS=0.000;HaplotypeScore=21.4967;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=19.71;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2418,267,0 chrIV 912021 . G A 2408 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.38;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2441,273,0 chrIV 912072 . T G 2829 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.57;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2862,324,0 chrIV 912340 . A G 2245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.656;DP=123;Dels=0.02;FS=6.072;HaplotypeScore=12.5320;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.210;QD=18.25;ReadPosRankSum=2.942;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2278,267,0 chrIV 912471 . A C 3541.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.9740;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.27;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,154:159:99:3541,408,0 chrIV 912557 . T C 4470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=199;Dels=0.00;FS=5.967;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.480;QD=22.46;ReadPosRankSum=2.874;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:4470,516,0 chrIV 912700 . A C 5076.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.07;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5076,582,0 chrIV 912778 . T C 4023.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=19.07;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4023,471,0 chrIV 912782 . A G 3994.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.6990;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.48;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:3994,459,0 chrIV 912884 . T C 4102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.012;DP=217;Dels=0.00;FS=14.128;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.617;QD=18.90;ReadPosRankSum=4.092;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:6,211:217:99:4102,477,0 chrIV 912902 . C T 4479.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.09;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4479,483,0 chrIV 912983 . C T 5215.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.18;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5215,567,0 chrIV 913034 . A G 4843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=210;Dels=0.00;FS=3.203;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.510;QD=23.06;ReadPosRankSum=1.682;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:1,206:210:99:4843,564,0 chrIV 913112 . T G 4552.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=15.1121;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=21.57;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4552,516,0 chrIV 913596 . T G 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=3.165;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.344;QD=22.38;ReadPosRankSum=1.684;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3256,366,0 chrIV 913633 . A G 2637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.386;QD=21.97;ReadPosRankSum=1.646;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2670,309,0 chrIV 913708 . A G 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=-0.602;QD=17.81;ReadPosRankSum=2.338;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1600,183,0 chrIV 913716 . T C 1561 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=18.58;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1594,189,0 chrIV 913736 . A G 1705 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=18.94;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1738,201,0 chrIV 913863 . T C 1875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-0.591;QD=22.59;ReadPosRankSum=1.690;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1908,219,0 chrIV 913903 . G A 1594 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=21.25;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1627,186,0 chrIV 913904 . A G 1564 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=20.85;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1597,186,0 chrIV 913905 . A T 1609 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=21.74;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1642,186,0 chrIV 913973 . G C 1139 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=18.98;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1172,132,0 chrIV 914065 . C T 1067 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=19.76;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1100,120,0 chrIV 914155 . T C 949 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=20.19;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:982,111,0 chrIV 914590 . G A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=15.1639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3609,387,0 chrIV 914816 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.43;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3126,354,0 chrIV 914902 . A G 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=149;Dels=0.00;FS=4.460;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.328;QD=22.64;ReadPosRankSum=1.662;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3373,396,0 chrIV 915378 . A T 1880 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=18.08;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1913,210,0 chrIV 915388 . T A 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=100;Dels=0.00;FS=6.242;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.973;QD=18.59;ReadPosRankSum=2.401;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1892,204,0 chrIV 915430 . G A 2414 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=17.75;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2447,273,0 chrIV 915507 . A C 3218.91 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.75;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3252,366,0 chrIV 916130 . T C 2959 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.59;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2992,339,0 chrIV 916142 . G A 2782 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.38;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2815,303,0 chrIV 916169 . A T 2301 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.01;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2334,258,0 chrIV 916446 . T C 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.7995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.358;QD=23.61;ReadPosRankSum=1.707;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3329,369,0 chrIV 917034 . T C 2144 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.42;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2177,255,0 chrIV 917149 . G A 2888 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.88;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2921,318,0 chrIV 917487 . T C 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.946;QD=21.64;ReadPosRankSum=1.645;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2608,297,0 chrIV 917577 . A G 2716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.350;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2915;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;MQRankSum=0.041;QD=21.39;ReadPosRankSum=-1.268;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2749,312,0 chrIV 917683 . A G 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=140;Dels=0.00;FS=6.435;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.184;QD=24.08;ReadPosRankSum=2.415;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3371,387,0 chrIV 917833 . A G 3193 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.87;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3226,366,0 chrIV 918196 . A C 3928.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.23;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3928,453,0 chrIV 918363 . A G 3093 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=22.91;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3126,360,0 chrIV 918400 . T A 3111 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=21.60;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3144,333,0 chrIV 918408 . C A 2821 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.3369;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.29;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2854,306,0 chrIV 918445 . A G 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.843;QD=20.05;ReadPosRankSum=1.709;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3081,351,0 chrIV 918495 . T C 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=171;Dels=0.00;FS=3.006;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-0.455;QD=19.51;ReadPosRankSum=2.421;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3337,384,0 chrIV 918501 . G A 3357.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.86;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3357,378,0 chrIV 918606 . G T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5344;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=18.81;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3424,372,0 chrIV 918617 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.5736;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-1.262;QD=18.25;ReadPosRankSum=1.713;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3263,375,0 chrIV 918797 . T C 3980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=181;Dels=0.00;FS=9.641;HaplotypeScore=15.4452;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.338;QD=21.99;ReadPosRankSum=2.394;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:2,176:181:99:3980,450,0 chrIV 918920 . G A 3463.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.22;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3463,381,0 chrIV 919021 . T G 3432.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.43;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3432,387,0 chrIV 919343 . T C 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=3.655;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.672;QD=22.58;ReadPosRankSum=1.672;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2675,303,0 chrIV 919637 . G A 2992 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.75;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3025,345,0 chrIV 920392 . T A 3176 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3209,351,0 chrIV 920565 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2646,288,0 chrIV 920628 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2472,273,0 chrIV 921043 . T C 1886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.510;DP=118;Dels=0.00;FS=12.343;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;MQRankSum=-0.276;QD=15.98;ReadPosRankSum=3.605;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:5,112:118:99:1919,216,0 chrIV 921045 . G A 1946 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=16.78;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1979,213,0 chrIV 921098 . C T 1737 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=13.90;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1770,192,0 chrIV 921108 . A G 1500 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=12.00;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:1533,174,0 chrIV 921130 . G A 1921 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=13.16;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:1954,216,0 chrIV 921413 . A G 4139.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.0100;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.45;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4139,483,0 chrIV 921790 . A T 905 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=17.08;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:938,102,0 chrIV 921825 . A G 89.79 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;DP=45;Dels=0.00;FS=5.892;HaplotypeScore=4.6671;MLEAC=1;MLEAF=0.500;MQ=56.31;MQ0=0;MQRankSum=0.667;QD=2.00;ReadPosRankSum=-4.043;SB=-3.579e+01 GT:AD:DP:GQ:PL 0/1:36,9:45:4:119,0,4 chrIV 922174 . C T 2732 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.21;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2765,297,0 chrIV 922223 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2926,321,0 chrIV 922382 . T C 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.155;QD=22.14;ReadPosRankSum=1.674;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2712,306,0 chrIV 922760 . A G 2452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.104;QD=20.78;ReadPosRankSum=1.673;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2485,282,0 chrIV 922835 . T C 2121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=104;Dels=0.00;FS=4.150;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=1.366;QD=20.39;ReadPosRankSum=1.699;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2154,246,0 chrIV 922904 . A G 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=3.617;HaplotypeScore=9.6304;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.889;QD=23.65;ReadPosRankSum=1.702;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2753,312,0 chrIV 922940 . A G 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.155;DP=142;Dels=0.00;FS=10.448;HaplotypeScore=4.0613;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=0.078;QD=19.91;ReadPosRankSum=2.311;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2860,327,0 chrIV 922961 . C A 2921 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=17.92;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:2954,339,0 chrIV 922979 . T G 2859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-2.405;QD=17.22;ReadPosRankSum=2.390;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:2,163:166:99:2892,330,0 chrIV 923078 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=14.39;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:1932,210,0 chrIV 923090 . T C 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.5534;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=0.149;QD=16.99;ReadPosRankSum=0.307;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2140,243,0 chrIV 923102 . C T 2132 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=16.92;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2165,237,0 chrIV 923384 . G T 3274.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.90;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3274,363,0 chrIV 923675 . A G 3709.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.4421;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.34;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3709,426,0 chrIV 923952 . T C 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.959;QD=21.73;ReadPosRankSum=1.679;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2880,330,0 chrIV 924009 . C T 3718.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=9.0237;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.30;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3718,402,0 chrIV 924083 . T A 2109 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.66;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2142,237,0 chrIV 924094 . A G 1916 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.26;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:1949,225,0 chrIV 924311 . A G 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=6.849;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-1.399;QD=23.80;ReadPosRankSum=2.396;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3284,372,0 chrIV 924342 . A G 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=3.358;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.472;QD=20.52;ReadPosRankSum=1.708;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3008,345,0 chrIV 924351 . G A 3040 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.74;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,150:154:99:3073,345,0 chrIV 924464 . T C 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.051;DP=159;Dels=0.00;FS=3.038;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.598;QD=21.74;ReadPosRankSum=2.418;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:2,152:159:99:3457,393,0 chrIV 924561 . C T 3828.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=24.38;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3828,414,0 chrIV 924591 . G A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=24.78;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3445,369,0 chrIV 924619 . G T 3313.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.17;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3313,363,0 chrIV 924667 . T C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=3.659;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.544;QD=22.80;ReadPosRankSum=1.707;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3180,360,0 chrIV 924698 . G A 3029 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.77;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3062,333,0 chrIV 925130 . C T 4195.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.68;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4195,450,0 chrIV 925318 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.8367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.82;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3085,348,0 chrIV 925484 . A G 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.460;DP=153;Dels=0.00;FS=4.443;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.483;QD=22.58;ReadPosRankSum=1.664;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3454,393,0 chrIV 925567 . A C 4284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.304;QD=21.97;ReadPosRankSum=1.679;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4284,486,0 chrIV 925618 . G C 4213.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.8988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4213,498,0 chrIV 925675 . A G 4398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=3.358;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.501;QD=22.55;ReadPosRankSum=1.679;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4398,498,0 chrIV 925876 . C T 4261.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.31;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4261,480,0 chrIV 925956 . G A 6054.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.11;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:6054,658,0 chrIV 926082 . A G 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.4575;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.851;QD=21.37;ReadPosRankSum=1.712;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3612,402,0 chrIV 926246 . A G 3362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=149;Dels=0.00;FS=7.800;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.784;QD=22.56;ReadPosRankSum=2.384;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3362,384,0 chrIV 926285 . C G 2836 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.1898;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.97;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2869,330,0 chrIV 926542 . A G 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.912;QD=20.63;ReadPosRankSum=1.687;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3169,357,0 chrIV 926885 . T C 4676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.0246;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.256;QD=20.97;ReadPosRankSum=1.701;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:4676,546,0 chrIV 927095 . G A 4512.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.0479;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,213:217:99:4512,498,0 chrIV 927589 . T C 1354 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=67.6296;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;QD=10.66;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1387,165,0 chrIV 927592 . C T 1324 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=67.6296;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=0;QD=10.68;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1357,156,0 chrIV 927595 . A T 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=67.6296;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=0;QD=0.95;SB=-8.025e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:12:101,12,0 chrIV 927624 . C G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=0;QD=0.21;SB=-7.668e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:6:47,6,0 chrIV 927625 . A T 83.26 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.16;MQ0=0;QD=1.10;SB=-7.693e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:15:116,15,0 chrIV 927646 . C T 1537 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=37.17;MQ0=0;QD=8.88;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:1570,186,0 chrIV 928114 . A T 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.620;DP=189;Dels=0.00;FS=12.176;HaplotypeScore=16.9472;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.274;QD=19.71;ReadPosRankSum=3.730;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:5,184:189:99:3726,420,0 chrIV 928279 . T C 4815.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=21.0611;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.59;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4815,561,0 chrIV 928579 . C G 386.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;DP=246;Dels=0.00;FS=420.278;HaplotypeScore=17.1038;MLEAC=1;MLEAF=0.500;MQ=57.42;MQ0=0;MQRankSum=-1.427;QD=1.57;ReadPosRankSum=-9.701;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:170,68:246:99:416,0,2246 chrIV 928636 . G A 4698.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.74;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:4698,510,0 chrIV 928753 . T C 5380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=2.7568;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-0.149;QD=20.15;ReadPosRankSum=1.719;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:1,266:267:99:5380,630,0 chrIV 928756 . C T 5587.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=21.08;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:5587,621,0 chrIV 928988 . T C 3661.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.92;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,163:167:99:3661,408,0 chrIV 929060 . G A 2771 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.35;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2804,303,0 chrIV 929473 . A G 1764 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.51;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1797,207,0 chrIV 929658 . A T 3479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.7120;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.381;QD=23.99;ReadPosRankSum=1.890;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3479,366,0 chrIV 929860 . G T 5102.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.7809;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.18;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:5102,561,0 chrIV 930059 . T C 3783.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4819;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.38;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3783,447,0 chrIV 930409 . A G 1696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.316;QD=22.03;ReadPosRankSum=1.640;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:1,74:77:99:1729,192,0 chrIV 930824 . T A 1423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=90;Dels=0.00;FS=3.317;HaplotypeScore=16.9928;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.417;QD=15.81;ReadPosRankSum=-0.197;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1456,159,0 chrIV 930988 . C T 291 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.95;MQ0=0;QD=3.68;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:36:324,36,0 chrIV 930989 . C G 376 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=40.02;MQ0=0;QD=4.53;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,79:83:48:409,48,0 chrIV 931013 . G C 1442 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=14.28;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1475,168,0 chrIV 931147 . T C 3868.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.7940;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=23.73;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3868,447,0 chrIV 931376 . C A 3882.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.7059;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.84;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3882,417,0 chrIV 931540 . A G 4827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=228;Dels=0.00;FS=5.492;HaplotypeScore=17.3897;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.683;QD=21.17;ReadPosRankSum=1.567;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:3,222:228:99:4827,543,0 chrIV 931593 . C T 3352.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8464;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.22;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3352,381,0 chrIV 931988 . C T 5727.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=21.2279;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.67;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5727,636,0 chrIV 932184 . G A 5896.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.08;SB=-3.436e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:5896,654,0 chrIV 932205 . A T 5732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=262;Dels=0.00;FS=3.448;HaplotypeScore=8.0983;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-1.108;QD=21.88;ReadPosRankSum=0.060;SB=-3.119e+03 GT:AD:DP:GQ:PL 1/1:1,260:262:99:5732,627,0 chrIV 932509 . A G 4141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.187;QD=21.02;ReadPosRankSum=1.697;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4141,471,0 chrIV 933397 . A G 1862 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1895,216,0 chrIV 933755 . A G 2863 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2896,330,0 chrIV 933821 . A G 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=1.204;QD=22.14;ReadPosRankSum=1.703;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,117:121:99:2712,309,0 chrIV 933861 . A G 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.375;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.782;QD=20.26;ReadPosRankSum=1.704;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2545,291,0 chrIV 933867 . C A 2587 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.86;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2620,288,0 chrIV 933896 . A G 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=133;Dels=0.00;FS=7.404;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=0.989;QD=19.96;ReadPosRankSum=2.376;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2688,300,0 chrIV 934007 . G A 3387.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.36;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3387,381,0 chrIV 934175 . G A 3081 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.85;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3114,345,0 chrIV 934184 . G A 3054 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.92;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3087,342,0 chrIV 934256 . C A 2234 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.77;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2267,249,0 chrIV 934358 . T C 1969 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.12;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2002,234,0 chrIV 934364 . C T 1962 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.56;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1995,231,0 chrIV 934508 . A G 2752 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2785,315,0 chrIV 934835 . A G 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.9668;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.821;QD=23.64;ReadPosRankSum=1.687;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1830,210,0 chrIV 934903 . T C 2091 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=20.11;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2124,240,0 chrIV 934907 . T C 2061 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=-0.447;QD=19.82;ReadPosRankSum=2.377;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:2,100:104:99:2094,240,0 chrIV 934913 . G A 2018 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=20.59;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2051,222,0 chrIV 934973 . T A 1675 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6435;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=18.41;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1708,189,0 chrIV 935011 . G A 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-1.580;QD=17.36;ReadPosRankSum=2.363;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:2,83:86:99:1526,158,0 chrIV 935012 . A G 1500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=86;Dels=0.01;FS=4.243;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-0.672;QD=17.44;ReadPosRankSum=1.610;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1533,177,0 chrIV 935060 . G A 2219 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=21.13;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2252,249,0 chrIV 935079 . G C 2005 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=17.28;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,110:116:99:2038,234,0 chrIV 935099 . G A 2438 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=21.58;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2471,276,0 chrIV 935138 . G A 2622 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=21.67;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2655,291,0 chrIV 935163 . A G 2955 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.4043;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=22.05;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2988,339,0 chrIV 935228 . G A 3198 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.05;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3231,351,0 chrIV 935317 . G A 2533 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=22.22;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2566,282,0 chrIV 935335 . A G 2326 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.58;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2359,273,0 chrIV 935504 . T C 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=137;Dels=0.00;FS=2.732;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.081;QD=22.87;ReadPosRankSum=2.414;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3166,363,0 chrIV 935544 . C T 3192 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.18;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3225,354,0 chrIV 935575 . T C 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.482;QD=22.28;ReadPosRankSum=1.666;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3521,402,0 chrIV 935988 . T C 4205.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.92;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4205,489,0 chrIV 936158 . C A 3730.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.4549;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.56;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3730,420,0 chrIV 936221 . A G 4095.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.62;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4095,459,0 chrIV 936290 . A T 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.417;QD=21.45;ReadPosRankSum=1.711;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3560,399,0 chrIV 936485 . T A 2764 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=18.68;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2797,309,0 chrIV 936486 . G C 2641 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=17.97;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2674,306,0 chrIV 936728 . A G 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=20.3107;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=0.342;QD=21.55;ReadPosRankSum=1.710;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3426,396,0 chrIV 936827 . C G 4584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.2886;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=1.387;QD=22.69;ReadPosRankSum=1.405;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4584,495,0 chrIV 936851 . T C 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.335;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.1396;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=1.317;QD=20.83;ReadPosRankSum=1.443;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4020,450,0 chrIV 937139 . T C 3828.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.27;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3828,429,0 chrIV 937167 . C T 4253.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.37;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4253,465,0 chrIV 937460 . G A 3008 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3041,330,0 chrIV 937517 . C T 2951 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2984,336,0 chrIV 937875 . T C 3817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.8624;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.297;QD=22.59;ReadPosRankSum=1.691;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3817,438,0 chrIV 938009 . A T 4334.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.43;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4334,474,0 chrIV 938147 . A G 5122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.123;DP=251;Dels=0.00;FS=12.579;HaplotypeScore=30.0721;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.474;QD=20.41;ReadPosRankSum=3.348;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:4,244:251:99:5122,585,0 chrIV 938591 . T C 4248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.713;QD=22.72;ReadPosRankSum=1.676;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4248,495,0 chrIV 938759 . C T 3806.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.65;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3806,417,0 chrIV 939227 . G A 5919.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=23.7556;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.51;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:0,260:263:99:5919,663,0 chrIV 939572 . C A 5114.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=11.0985;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.49;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5114,567,0 chrIV 939749 . A G 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.145;DP=180;Dels=0.00;FS=3.338;HaplotypeScore=18.1215;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.842;QD=19.66;ReadPosRankSum=0.687;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3538,391,0 chrIV 940069 . A G 3731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.1211;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.439;QD=20.84;ReadPosRankSum=1.713;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:3731,426,0 chrIV 940202 . T C 4565.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.83;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4565,513,0 chrIV 940217 . A G 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=3.203;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.132;QD=20.85;ReadPosRankSum=1.694;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:3857,456,0 chrIV 940972 . G C 3071 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=17.96;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:3104,360,0 chrIV 940995 . T A 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=162;Dels=0.00;FS=5.881;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.306;QD=17.94;ReadPosRankSum=2.956;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:2939,336,0 chrIV 941063 . T C 4139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.518;QD=21.34;ReadPosRankSum=1.714;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4139,483,0 chrIV 941099 . C T 4931.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.4130;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.31;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4931,540,0 chrIV 941151 . T C 4368.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.20;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4368,495,0 chrIV 941338 . C T 4123.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=28.2831;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.82;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4123,453,0 chrIV 941449 . A G 4335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.3365;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.589;QD=21.35;ReadPosRankSum=1.698;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4335,492,0 chrIV 942067 . T G 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=151;Dels=0.00;FS=3.020;HaplotypeScore=4.7935;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-0.385;QD=18.73;ReadPosRankSum=2.286;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:2861,330,0 chrIV 942069 . G A 2955 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.9653;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.10;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2988,330,0 chrIV 942081 . C T 2992 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=20.49;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3025,327,0 chrIV 942296 . T G 2803 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=16.3918;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.74;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2836,336,0 chrIV 942582 . A G 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=3.391;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=0.119;QD=20.69;ReadPosRankSum=1.679;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2744,309,0 chrIV 942593 . A G 2536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=130;Dels=0.00;FS=11.387;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.646;QD=19.51;ReadPosRankSum=2.914;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:3,125:130:99:2569,297,0 chrIV 942662 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.54;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3575,408,0 chrIV 942724 . T A 4051.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.9462;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.15;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4051,438,0 chrIV 942748 . G A 3705.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.7707;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.58;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3705,408,0 chrIV 942812 . C T 4863.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=16.1699;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.05;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4863,528,0 chrIV 942881 . A G 4167.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.43;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4167,489,0 chrIV 942914 . A G 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=177;Dels=0.00;FS=2.978;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.021;QD=20.28;ReadPosRankSum=2.421;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:2,172:177:99:3589,417,0 chrIV 943103 . G C 3133 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.08;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3166,363,0 chrIV 943132 . A G 3360.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.68;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3360,378,0 chrIV 943326 . C T 2795 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.72;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2828,306,0 chrIV 943539 . T C 2602 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.87;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2635,303,0 chrIV 943601 . A T 2682 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=21.98;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2715,303,0 chrIV 943622 . T C 2081 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=104;Dels=0.00;FS=4.331;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=-1.093;QD=20.01;ReadPosRankSum=1.698;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2114,243,0 chrIV 943625 . C T 2091 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=21.12;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2124,228,0 chrIV 943632 . G T 1894 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=97;Dels=0.00;FS=2.922;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=1.282;QD=19.53;ReadPosRankSum=1.637;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1927,210,0 chrIV 944052 . A G 4399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=189;Dels=0.00;FS=8.420;HaplotypeScore=10.3335;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.630;QD=23.28;ReadPosRankSum=2.424;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4399,501,0 chrIV 944216 . G C 3468.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.28;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3468,390,0 chrIV 944227 . A G 3641.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.5758;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=19.16;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3641,414,0 chrIV 944433 . G C 3605.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.53;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3605,405,0 chrIV 944564 . C T 4134.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.84;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4134,450,0 chrIV 944898 . G A 4927.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4927,555,0 chrIV 945040 . T A 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=162;Dels=0.00;FS=4.033;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.133;QD=20.25;ReadPosRankSum=1.625;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3281,357,0 chrIV 945256 . T G 2985 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3018,342,0 chrIV 945302 . C T 3173 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.04;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3206,345,0 chrIV 945353 . T G 1951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.849;QD=18.76;ReadPosRankSum=1.698;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,101:104:99:1984,225,0 chrIV 945358 . G T 2055 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.55;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2088,225,0 chrIV 945419 . G A 2356 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=20.31;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2389,270,0 chrIV 945535 . T A 2910 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.73;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2943,318,0 chrIV 945604 . T G 1959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=101;Dels=0.00;FS=7.476;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.475;QD=19.40;ReadPosRankSum=2.304;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1992,228,0 chrIV 945712 . A G 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=103;Dels=0.00;FS=2.838;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-0.753;QD=21.39;ReadPosRankSum=2.354;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2236,258,0 chrIV 945862 . C G 2118 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=21.61;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2151,240,0 chrIV 946294 . C G 43.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=0;QD=5.50;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,6:8:9:76,9,0 chrIV 946295 . A C 90.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;QD=8.21;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,10:11:15:123,15,0 chrIV 946425 . T C 1755 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=20.17;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1788,201,0 chrIV 946452 . C T 1677 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=18.03;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1710,192,0 chrIV 946463 . G T 1791 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=17.91;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1824,198,0 chrIV 946753 . A G 2958 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.11;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2991,336,0 chrIV 946787 . C T 2692 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.2045;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=21.03;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2725,303,0 chrIV 946794 . C T 2681 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.31;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2714,294,0 chrIV 946897 . A G 3417.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.1948;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.40;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3417,393,0 chrIV 946992 . G T 4524.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=18.4211;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=24.06;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4524,510,0 chrIV 947024 . A G 4113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=194;Dels=0.00;FS=8.770;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-0.703;QD=21.20;ReadPosRankSum=2.336;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4113,465,0 chrIV 947313 . A G 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.114;DP=153;Dels=0.00;FS=9.164;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=1.548;QD=20.97;ReadPosRankSum=3.401;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:4,148:153:99:3241,372,0 chrIV 947337 . C T 3487.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0044;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.52;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3487,399,0 chrIV 947412 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=165;Dels=0.00;FS=3.834;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.133;QD=22.44;ReadPosRankSum=1.647;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3702,423,0 chrIV 947475 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0447;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.56;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3451,390,0 chrIV 947805 . C T 4476.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.52;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4476,504,0 chrIV 947829 . G T 3799.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.09;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3799,411,0 chrIV 947968 . G A 3492.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.13;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3492,384,0 chrIV 947998 . T C 3301.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.25;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3301,372,0 chrIV 948159 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.32;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3432,393,0 chrIV 948349 . C A 3547.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.8821;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.65;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3547,387,0 chrIV 948494 . A G 2324 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.86;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2357,264,0 chrIV 948509 . A G 2316 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.14;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,117:121:99:2349,267,0 chrIV 948548 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.8620;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.93;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3596,405,0 chrIV 948656 . G A 4230.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=25.48;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4230,471,0 chrIV 948698 . A G 3569.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.28;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3569,399,0 chrIV 948761 . C T 4641.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.86;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4641,534,0 chrIV 948920 . C T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.83;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3252,351,0 chrIV 949385 . C T 3154 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.90;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3187,360,0 chrIV 949454 . A T 3427.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.3080;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.11;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3427,390,0 chrIV 949737 . T C 2298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.423;DP=138;Dels=0.00;FS=13.544;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-1.285;QD=16.65;ReadPosRankSum=4.423;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:7,130:138:99:2331,264,0 chrIV 949739 . C T 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=138;Dels=0.00;FS=5.370;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.876;QD=17.04;ReadPosRankSum=2.745;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:2384,264,0 chrIV 949789 . T C 2136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=125;Dels=0.00;FS=2.567;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=0.327;QD=17.09;ReadPosRankSum=2.410;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2169,246,0 chrIV 949825 . G A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.50;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3252,351,0 chrIV 949927 . A G 3273.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.89;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3273,381,0 chrIV 949961 . A G 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-1.611;QD=23.27;ReadPosRankSum=1.672;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4025,447,0 chrIV 950109 . C A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=24.20;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3944,420,0 chrIV 950289 . C G 3045 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.4602;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.44;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3078,351,0 chrIV 950307 . G C 2673 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=17.13;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:2706,318,0 chrIV 950317 . G C 2564 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.1928;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=16.87;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2597,297,0 chrIV 950368 . A G 2106 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=16.08;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2139,243,0 chrIV 950411 . A G 2658 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=18.99;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2691,300,0 chrIV 950412 . T C 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=4.137;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.891;QD=18.57;ReadPosRankSum=1.658;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2652,297,0 chrIV 950760 . G A 4007.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.58;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4007,441,0 chrIV 950907 . C T 4613.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.6799;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.03;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4613,510,0 chrIV 950937 . A G 4526.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.2045;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.82;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4526,507,0 chrIV 950965 . G A 4561.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.15;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4561,507,0 chrIV 951078 . T C 4096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=200;Dels=0.00;FS=3.014;HaplotypeScore=8.7464;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.537;QD=20.48;ReadPosRankSum=2.388;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:4096,465,0 chrIV 951087 . A G 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=202;Dels=0.00;FS=3.209;HaplotypeScore=4.3325;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=0.612;QD=20.11;ReadPosRankSum=1.698;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4062,453,0 chrIV 951096 . C G 4046.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.9098;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.74;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4046,459,0 chrIV 951132 . T A 4183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=207;Dels=0.00;FS=3.292;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.711;QD=20.21;ReadPosRankSum=1.632;SB=-2.580e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4183,453,0 chrIV 951624 . T C 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=3.544;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.355;QD=24.38;ReadPosRankSum=1.685;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3584,402,0 chrIV 951669 . C T 3970.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3970,429,0 chrIV 952329 . T C 2972 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.59;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3005,345,0 chrIV 952433 . C T 3042 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.20;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3075,345,0 chrIV 952563 . A G 1700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.736;QD=20.99;ReadPosRankSum=1.646;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1733,198,0 chrIV 952568 . C T 1650 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=20.12;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1683,192,0 chrIV 952622 . T G 1937 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=19.57;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1970,231,0 chrIV 952698 . C T 1666 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=18.11;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1699,192,0 chrIV 952701 . C T 1715 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=18.44;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1748,192,0 chrIV 952710 . T G 1590 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=17.10;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1623,186,0 chrIV 952937 . G A 2683 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=23.33;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2716,297,0 chrIV 953098 . C T 4655.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=24.76;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4655,501,0 chrIV 953287 . C G 3806.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.13;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:3806,429,0 chrIV 953288 . G A 4025.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=20.13;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4025,438,0 chrIV 953474 . A G 3579.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.1204;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.23;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3579,411,0 chrIV 953517 . C T 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.425;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.1640;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.329;QD=23.13;ReadPosRankSum=-1.469;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3701,386,0 chrIV 953613 . C T 3951.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3951,429,0 chrIV 953693 . T C 4590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.696;QD=24.03;ReadPosRankSum=1.714;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4590,525,0 chrIV 954146 . T A 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.478;QD=23.87;ReadPosRankSum=2.391;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:3041,333,0 chrIV 954283 . T C 3954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=164;Dels=0.00;FS=5.488;HaplotypeScore=11.0091;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.273;QD=24.11;ReadPosRankSum=2.932;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:3,159:164:99:3954,453,0 chrIV 954475 . T C 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=175;Dels=0.00;FS=7.012;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.393;QD=21.78;ReadPosRankSum=2.392;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:2,170:175:99:3812,429,0 chrIV 954530 . T C 4338.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.25;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4338,495,0 chrIV 954939 . C T 5124.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=21.35;SB=-3.041e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5124,561,0 chrIV 954954 . G A 4861.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=19.60;SB=-3.235e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:4861,534,0 chrIV 954963 . G A 4243.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=16.77;SB=-3.278e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:4243,459,0 chrIV 954985 . A C 4153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=264;Dels=0.00;FS=3.631;HaplotypeScore=13.7195;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.441;QD=15.73;ReadPosRankSum=1.640;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:1,262:264:99:4153,489,0 chrIV 955099 . C A 6598.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=24.0989;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.31;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,281:283:99:6598,720,0 chrIV 955293 . A G 6278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.852;DP=336;Dels=0.00;FS=14.705;HaplotypeScore=26.9930;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.313;QD=18.68;ReadPosRankSum=4.081;SB=-3.932e+03 GT:AD:DP:GQ:PL 1/1:6,330:336:99:6278,714,0 chrIV 955574 . T G 2306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=150;Dels=0.00;FS=8.480;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.234;QD=15.37;ReadPosRankSum=1.709;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:1,147:150:99:2339,267,0 chrIV 955620 . A C 2672 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.41;MQ0=0;QD=18.95;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2705,306,0 chrIV 955643 . C T 2607 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=20.21;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2640,297,0 chrIV 955755 . T A 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.646;QD=23.45;ReadPosRankSum=1.703;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2824,312,0 chrIV 955831 . C T 1479 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.41;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1512,171,0 chrIV 955955 . G A 2881 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.73;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2914,330,0 chrIV 956364 . C T 3769.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3769,417,0 chrIV 956402 . T A 4607.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4607,510,0 chrIV 956810 . T C 2800 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2833,324,0 chrIV 956978 . C T 3979.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3979,432,0 chrIV 957146 . T C 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=3.602;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.787;QD=22.05;ReadPosRankSum=1.690;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3638,417,0 chrIV 957185 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.75;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3459,381,0 chrIV 957311 . C T 2249 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.3516;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=16.78;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2282,255,0 chrIV 957317 . T C 1925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=130;Dels=0.00;FS=3.668;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;MQRankSum=-0.433;QD=14.81;ReadPosRankSum=1.705;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:1958,222,0 chrIV 957329 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.02;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=14.39;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1932,222,0 chrIV 957342 . T C 1881 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;QD=14.93;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1914,216,0 chrIV 957370 . G A 2124 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=10.1647;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;QD=15.39;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2157,240,0 chrIV 957424 . T C 2812 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=19.94;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2845,330,0 chrIV 957741 . T A 3443.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.77;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3443,369,0 chrIV 958319 . A C 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=138;Dels=0.00;FS=4.143;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.654;QD=19.09;ReadPosRankSum=1.681;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:2668,300,0 chrIV 958391 . A G 3039 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.40;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3072,354,0 chrIV 958478 . G A 2526 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.16;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2559,291,0 chrIV 958617 . T G 2357 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.88;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2390,273,0 chrIV 958650 . A G 1966 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.84;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1999,225,0 chrIV 958762 . T C 1450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=118;Dels=0.00;FS=7.261;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-2.113;QD=12.29;ReadPosRankSum=2.408;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:1483,171,0 chrIV 959248 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.92;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3082,333,0 chrIV 959287 . A G 2772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.537;QD=22.35;ReadPosRankSum=1.704;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2805,315,0 chrIV 959371 . C T 3131 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.37;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3164,342,0 chrIV 959478 . A G 3815.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.77;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3815,429,0 chrIV 959521 . G A 3953.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3953,426,0 chrIV 959837 . A T 4485.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.4811;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.24;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4485,498,0 chrIV 959870 . T A 4327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.957;DP=203;Dels=0.01;FS=13.879;HaplotypeScore=29.3206;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.397;QD=21.32;ReadPosRankSum=4.050;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:6,194:200:99:4327,486,0 chrIV 959924 . A G 4395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=200;Dels=0.01;FS=4.642;HaplotypeScore=178.0484;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.245;QD=21.98;ReadPosRankSum=1.715;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4395,501,0 chrIV 960076 . A G 5661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=247;Dels=0.00;FS=3.019;HaplotypeScore=9.9570;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.692;QD=22.92;ReadPosRankSum=2.399;SB=-3.013e+03 GT:AD:DP:GQ:PL 1/1:2,241:247:99:5661,642,0 chrIV 960101 . A G 5304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.315;QD=22.01;ReadPosRankSum=1.718;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5304,618,0 chrIV 960339 . T C 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=3.554;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.688;QD=20.17;ReadPosRankSum=1.656;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2776,318,0 chrIV 960374 . G A 2309 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.4549;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.25;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2342,258,0 chrIV 961189 . A G 3156 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3189,360,0 chrIV 961684 . A G 3395.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.48;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3395,393,0 chrIV 961848 . G A 4597.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4597,498,0 chrIV 962545 . G A 4014.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.34;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4014,435,0 chrIV 962782 . A G 3798.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.2885;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.34;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3798,447,0 chrIV 963747 . C T 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.7001;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.170;QD=24.44;ReadPosRankSum=1.664;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3763,411,0 chrIV 963777 . T C 3873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.496;QD=22.65;ReadPosRankSum=1.692;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3873,441,0 chrIV 964972 . G A 2368 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.68;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2401,264,0 chrIV 965755 . G A 3218.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.50;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3251,354,0 chrIV 966228 . C T 2222 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.22;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2255,255,0 chrIV 966497 . C T 1168 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;QD=16.45;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1201,129,0 chrIV 966504 . C T 895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.082;DP=105;Dels=0.00;FS=7.902;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=0;MQRankSum=-0.994;QD=8.52;ReadPosRankSum=7.986;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:43,62:105:80:928,80,0 chrIV 966514 . T C 173.03 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.78;MQ0=0;QD=3.33;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:24:206,24,0 chrIV 966524 . A T 246 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;QD=4.64;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:30:279,30,0 chrIV 966525 . A T 248 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.686;DP=53;Dels=0.00;FS=4.232;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;MQRankSum=-1.732;QD=4.68;ReadPosRankSum=1.667;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:30:281,30,0 chrIV 966526 . A T 246 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.144;DP=53;Dels=0.00;FS=4.232;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;MQRankSum=-1.602;QD=4.64;ReadPosRankSum=1.667;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:30:279,30,0 chrIV 966527 . A C 238 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=54;Dels=0.00;FS=4.102;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.33;MQ0=0;MQRankSum=-1.668;QD=4.41;ReadPosRankSum=1.604;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:30:271,30,0 chrIV 966528 . A T 241 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=4.38;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:30:274,30,0 chrIV 966529 . A T 257 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;QD=4.51;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:33:290,33,0 chrIV 966614 . G A 3070 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=21.32;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3103,333,0 chrIV 966626 . G A 2998 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.4982;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=18.86;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3031,351,0 chrIV 966662 . C T 3555.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=21.81;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3555,390,0 chrIV 966686 . G A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;QD=22.11;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3471,375,0 chrIV 966952 . A G 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=156;Dels=0.00;FS=6.276;HaplotypeScore=5.6565;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-0.496;QD=22.19;ReadPosRankSum=2.276;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3461,390,0 chrIV 966953 . C G 3446.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.4452;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=22.09;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3446,390,0 chrIV 966980 . T C 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=0.097;QD=19.93;ReadPosRankSum=1.668;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3241,369,0 chrIV 967004 . A T 2596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=4.508;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=-0.770;QD=18.03;ReadPosRankSum=1.684;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2629,288,0 chrIV 967019 . C T 2198 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=15.59;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2231,243,0 chrIV 967037 . T C 2237 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.91;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2270,261,0 chrIV 967248 . G A 3599.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.5705;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.81;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3599,402,0 chrIV 967375 . T C 3885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=180;Dels=0.00;FS=2.936;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.118;QD=21.58;ReadPosRankSum=2.367;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3885,447,0 chrIV 967787 . A G 2114 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.73;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2147,252,0 chrIV 967934 . G A 2348 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.35;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2381,252,0 chrIV 968024 . T A 1993 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.76;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2026,219,0 chrIV 968331 . G A 5729.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=25.24;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5729,613,0 chrIV 968466 . G A 3879.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=16.7912;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=18.30;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:3879,426,0 chrIV 968469 . G T 3912.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.02;FS=0.000;HaplotypeScore=27.8509;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=17.94;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:3912,435,0 chrIV 969384 . C A 2144 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.33;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2177,246,0 chrIV 969643 . T G 2110 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2143,243,0 chrIV 970293 . G A 2764 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2797,312,0 chrIV 970434 . C T 3062 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3095,345,0 chrIV 970494 . G T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3366,375,0 chrIV 970658 . G A 4080.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.05;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4080,438,0 chrIV 970695 . C T 4089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.635;DP=181;Dels=0.00;FS=3.632;HaplotypeScore=11.6610;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.173;QD=22.59;ReadPosRankSum=0.558;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4089,436,0 chrIV 970880 . C T 3761.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.12;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3761,423,0 chrIV 971073 . T C 3689.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.93;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3689,417,0 chrIV 971172 . C T 2599 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.96;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2632,297,0 chrIV 971579 . C A 2614 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.20;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2647,282,0 chrIV 971728 . C T 2204 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.99;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2237,243,0 chrIV 971787 . A T 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=116;Dels=0.00;FS=4.412;HaplotypeScore=9.0239;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.179;QD=23.06;ReadPosRankSum=1.702;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2708,294,0 chrIV 971873 . T C 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=107;Dels=0.00;FS=2.598;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.368;QD=21.92;ReadPosRankSum=2.859;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:3,104:107:99:2378,270,0 chrIV 971904 . G A 2131 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.97;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2164,240,0 chrIV 972096 . A G 3966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=171;Dels=0.00;FS=7.620;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.525;QD=23.19;ReadPosRankSum=2.363;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3966,456,0 chrIV 972240 . A G 4342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.502;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.5190;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.325;QD=21.28;ReadPosRankSum=1.724;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4342,492,0 chrIV 972369 . T C 4563.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=21.7031;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.01;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4563,522,0 chrIV 972414 . A G 4594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=224;Dels=0.00;FS=5.877;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=0.691;QD=20.51;ReadPosRankSum=2.951;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:3,221:224:99:4594,516,0 chrIV 972465 . T C 5072.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.70;SB=-3.025e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5072,579,0 chrIV 972540 . A G 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.1735;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.260;QD=20.92;ReadPosRankSum=1.680;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4163,477,0 chrIV 972660 . G A 5048.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.48;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5048,570,0 chrIV 972804 . A G 4621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.6200;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.773;QD=20.63;ReadPosRankSum=1.701;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:4621,543,0 chrIV 973137 . G A 3996.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.70;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3996,429,0 chrIV 973443 . C T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=15.9604;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3633,390,0 chrIV 973794 . G T 3088 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3121,345,0 chrIV 974152 . A G 3683.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.60;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3683,423,0 chrIV 974630 . A G 2194 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.09;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2227,255,0 chrIV 974632 . T C 2084 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.41;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2117,240,0 chrIV 974689 . T A 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.067;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.6119;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=1.466;QD=19.25;ReadPosRankSum=1.699;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2073,237,0 chrIV 974731 . T C 3507.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.92;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3507,390,0 chrIV 974875 . T C 2920 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=23.74;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2953,336,0 chrIV 974899 . C T 3441.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=22.64;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3441,369,0 chrIV 974990 . T A 2707 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.4811;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.51;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2740,312,0 chrIV 975090 . A G 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=154;Dels=0.01;FS=6.107;HaplotypeScore=3.9544;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;MQRankSum=0.120;QD=19.90;ReadPosRankSum=2.417;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3097,354,0 chrIV 975094 . T C 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;MQRankSum=0.337;QD=19.63;ReadPosRankSum=1.686;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2958,345,0 chrIV 975108 . A G 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.040;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=0.384;QD=18.17;ReadPosRankSum=1.709;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:2758,321,0 chrIV 975126 . G T 2604 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=19.01;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2637,288,0 chrIV 975354 . G A 3548.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=21.77;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3548,387,0 chrIV 975363 . T C 3526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.728;QD=20.86;ReadPosRankSum=1.691;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3526,396,0 chrIV 975612 . C A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.3686;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.66;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3445,381,0 chrIV 975702 . C T 4022.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.1187;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=23.11;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4022,438,0 chrIV 976084 . G A 1449 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=24.98;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1482,159,0 chrIV 976174 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=21.40;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1938,210,0 chrIV 976264 . A G 2390 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2423,288,0 chrIV 977181 . G A 4211.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.79;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4211,453,0 chrIV 977306 . G A 3192 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.86;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3225,360,0 chrIV 977428 . C T 2766 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.05;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2799,309,0 chrIV 977435 . C T 2823 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=23.14;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2856,309,0 chrIV 977477 . A T 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=4.386;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=-0.198;QD=18.21;ReadPosRankSum=1.707;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2601,285,0 chrIV 977485 . A G 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=4.742;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=0.024;QD=17.31;ReadPosRankSum=1.661;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2560,294,0 chrIV 977767 . G A 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=181;Dels=0.00;FS=3.132;HaplotypeScore=15.8087;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.694;QD=22.03;ReadPosRankSum=-0.794;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3988,453,0 chrIV 978043 . A G 5136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=8.7696;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.901;QD=20.79;ReadPosRankSum=1.704;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:1,245:247:99:5136,600,0 chrIV 978384 . G A 3091 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.47;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3124,345,0 chrIV 978570 . A G 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=135;Dels=0.00;FS=8.444;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.826;QD=21.25;ReadPosRankSum=2.376;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2902,330,0 chrIV 978598 . A G 3444.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5203;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.51;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3444,393,0 chrIV 978636 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.30;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3451,375,0 chrIV 978778 . C T 3528.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.21;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3528,387,0 chrIV 978959 . T C 2199 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.35;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2232,264,0 chrIV 979386 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=22.80;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3088,336,0 chrIV 979492 . T C 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.1463;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.577;QD=22.06;ReadPosRankSum=1.700;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2437,279,0 chrIV 979529 . T C 2322 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=21.91;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2355,267,0 chrIV 979539 . G T 2228 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;QD=22.06;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2261,249,0 chrIV 979584 . C T 1741 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.11;MQ0=0;QD=19.34;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1774,204,0 chrIV 979591 . A G 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.30;MQ0=0;MQRankSum=-0.095;QD=18.73;ReadPosRankSum=1.694;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:1,90:94:99:1794,207,0 chrIV 979606 . G C 1878 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=42.33;MQ0=0;QD=18.78;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1911,219,0 chrIV 979668 . T G 2623 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=22.23;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2656,303,0 chrIV 979786 . G A 2529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=115.2704;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;MQRankSum=1.341;QD=20.40;ReadPosRankSum=1.648;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2562,279,0 chrIV 979805 . T G 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.7554;MLEAC=2;MLEAF=1.00;MQ=36.51;MQ0=0;MQRankSum=0.835;QD=17.63;ReadPosRankSum=1.682;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2484,285,0 chrIV 979813 . T C 2343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;MQRankSum=0.792;QD=16.74;ReadPosRankSum=1.683;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2376,273,0 chrIV 979873 . G A 1954 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.20;MQ0=0;QD=13.38;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1987,228,0 chrIV 979879 . G A 2143 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.06;MQ0=0;QD=13.83;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2176,234,0 chrIV 979891 . T G 1942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=152;Dels=0.00;FS=2.892;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=39.03;MQ0=0;MQRankSum=-1.722;QD=12.78;ReadPosRankSum=2.417;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:1975,222,0 chrIV 979901 . T C 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.291;DP=156;Dels=0.00;FS=8.692;HaplotypeScore=5.9773;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=0;MQRankSum=-2.450;QD=12.76;ReadPosRankSum=3.403;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:4,152:156:99:2024,231,0 chrIV 979931 . A G 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;MQRankSum=-0.094;QD=16.07;ReadPosRankSum=1.711;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2684,303,0 chrIV 979973 . G A 3085 SnpCluster AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;QD=19.04;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3118,360,0 chrIV 979982 . G C 3054 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;QD=19.21;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3087,377,0 chrIV 979983 . A G 3069 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=158;Dels=0.00;FS=2.795;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;MQRankSum=-0.832;QD=19.42;ReadPosRankSum=1.299;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3102,356,0 chrIV 980016 . A T 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.0769;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;MQRankSum=-2.024;QD=18.96;ReadPosRankSum=2.400;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:2877,339,0 chrIV 980072 . G A 2622 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=42.15;MQ0=0;QD=19.86;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2655,285,0 chrIV 980090 . T C 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.0525;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;MQRankSum=-0.929;QD=18.48;ReadPosRankSum=0.840;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:2,137:141:99:2638,297,0 chrIV 980269 . G A 2913 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=21.58;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2946,327,0 chrIV 980341 . T C 3108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=1.034;QD=23.19;ReadPosRankSum=1.706;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3141,357,0 chrIV 980364 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=23.05;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3006,330,0 chrIV 980428 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=3.155;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=0.532;QD=22.95;ReadPosRankSum=1.642;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3535,390,0 chrIV 980461 . T G 3668.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.1218;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=21.33;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3668,426,0 chrIV 980521 . T A 3593.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.2102;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=23.18;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3593,390,0 chrIV 980614 . T G 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.228;DP=159;Dels=0.00;FS=8.827;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;MQRankSum=-0.786;QD=19.69;ReadPosRankSum=3.404;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:4,155:159:99:3164,360,0 chrIV 980617 . C G 3133 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=19.22;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3166,366,0 chrIV 980652 . A C 3550.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=19.29;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3550,419,0 chrIV 980689 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;QD=20.72;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3058,354,0 chrIV 980706 . G A 2684 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.35;MQ0=0;QD=20.49;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2717,312,0 chrIV 980714 . C T 2612 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;QD=21.24;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2645,297,0 chrIV 980779 . G C 2609 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=20.22;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2642,309,0 chrIV 980816 . G A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=21.38;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3336,378,0 chrIV 980844 . A G 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=147;Dels=0.00;FS=2.535;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;MQRankSum=-1.610;QD=19.84;ReadPosRankSum=2.939;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:2949,353,0 chrIV 980857 . C T 2753 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;QD=19.95;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,134:138:99:2786,326,0 chrIV 980873 . T G 2337 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.57;MQ0=0;QD=19.81;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2370,287,0 chrIV 980906 . T C 1324 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=34.66;MQ0=0;QD=17.19;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1357,162,0 chrIV 980919 . A G 988 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;MQRankSum=-1.732;QD=17.96;ReadPosRankSum=1.669;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1021,120,0 chrIV 980920 . T G 972 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=27.22;MQ0=0;QD=18.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1005,120,0 chrIV 980934 . A G 660 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=31.44;MQ0=0;MQRankSum=1.403;QD=15.71;ReadPosRankSum=1.650;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,41:42:81:693,81,0 chrIV 980935 . A G 676 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.65;MQ0=0;QD=16.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:42:84:709,84,0 chrIV 981066 . A T 414 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.63;MQ0=0;QD=13.80;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:57:447,57,0 chrIV 981071 . T C 361 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=0;QD=13.88;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,25:26:51:394,51,0 chrIV 981074 . G T 294 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=14.70;SB=-7.059e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:42:327,42,0 chrIV 981075 . A T 290 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=14.50;SB=-7.059e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:42:323,42,0 chrIV 981087 . T C 221 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.41;MQ0=0;QD=17.00;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:33:254,33,0 chrIV 981096 . G C 172.01 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=15.64;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:27:205,27,0 chrIV 981112 . C T 59.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=9.92;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:92,12,0 chrIV 981344 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.98;MQ0=10;QD=1.04;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:9,12:21:6:53,6,0 chrIV 981449 . A T 105.26 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=15.04;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:138,15,0 chrIV 981456 . A C 95.26 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=13.61;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:128,15,0 chrIV 981457 . T A 96.26 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=13.75;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:129,15,0 chrIV 981458 . C A 98.26 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.61;MQ0=1;QD=12.28;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,7:8:15:131,15,0 chrIV 981460 . C A 105.26 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=2;QD=8.10;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,9:13:15:138,15,0 chrIV 981500 . A T 1885 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=3;QD=22.99;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1918,210,0 chrIV 981849 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.01;MQ0=33;QD=0.46;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,45:52:6:55,6,0 chrIV 981869 . G A 49.04 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=5.5006;MLEAC=1;MLEAF=0.500;MQ=12.39;MQ0=173;MQRankSum=-1.051;QD=0.16;ReadPosRankSum=1.258;SB=8.95 GT:AD:DP:GQ:PL 1/1:1,289:310:9:81,9,0 chrIV 981921 . G A 4834.01 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=7.0575;MLEAC=2;MLEAF=1.00;MQ=15.76;MQ0=42;QD=4.83;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,1000:1000:99:4834,633,0 chrIV 981945 . A G 4773.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.728;DP=933;DS;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=15.77;MQ0=33;MQRankSum=-0.754;QD=5.12;ReadPosRankSum=1.728;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:2,931:933:99:4773,627,0 chrIV 982185 . G T 52.97 filter AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=28.4623;MLEAC=2;MLEAF=1.00;MQ=8.96;MQ0=74;QD=0.23;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,223:229:9:85,9,0 chrIV 992797 . G C 3098 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;QD=23.65;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3131,360,0 chrIV 992912 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.26;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3561,402,0 chrIV 992975 . C A 2678 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=17.74;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2711,306,0 chrIV 993037 . C T 2055 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.72;MQ0=0;QD=14.08;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2088,222,0 chrIV 993060 . T A 1993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=6.441;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;MQRankSum=-1.826;QD=14.44;ReadPosRankSum=2.414;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2026,225,0 chrIV 993078 . T C 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=145;Dels=0.00;FS=3.040;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;MQRankSum=-1.653;QD=15.84;ReadPosRankSum=2.416;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2330,261,0 chrIV 993128 . A G 2470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=125;Dels=0.00;FS=6.201;HaplotypeScore=10.6085;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=0.091;QD=19.76;ReadPosRankSum=2.409;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:3,121:125:99:2503,282,0 chrIV 993235 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=23.42;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3349,384,0 chrIV 993303 . A G 3068 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=22.23;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3101,354,0 chrIV 993336 . A T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0332;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.42;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3442,372,0 chrIV 993391 . A T 3733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=157;Dels=0.00;FS=2.936;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.048;QD=23.78;ReadPosRankSum=2.371;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3733,402,0 chrIV 993416 . T A 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=3.698;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=0.386;QD=23.41;ReadPosRankSum=1.688;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3722,414,0 chrIV 993571 . T C 3673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.9993;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.511;QD=23.39;ReadPosRankSum=1.688;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3673,429,0 chrIV 993715 . T C 3760.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.61;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3760,447,0 chrIV 993979 . C T 1978 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.1704;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=17.66;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2011,219,0 chrIV 994007 . A T 155.06 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.03;FS=0.000;HaplotypeScore=59.1200;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=1.44;SB=-8.261e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:21:188,21,0 chrIV 994023 . A G 893 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=9.71;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:926,108,0 chrIV 994124 . A G 2399 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.61;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2432,279,0 chrIV 994230 . T C 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=121;Dels=0.00;FS=2.681;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.114;QD=22.58;ReadPosRankSum=2.367;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:2,117:121:99:2765,318,0 chrIV 994514 . C T 2658 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.60;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2691,288,0 chrIV 994605 . A T 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=115;Dels=0.00;FS=3.617;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.431;QD=20.88;ReadPosRankSum=1.702;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2434,270,0 chrIV 994719 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.0642;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=24.41;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3344,363,0 chrIV 995637 . T C 1842 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.70;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1875,213,0 chrIV 995816 . A T 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;DP=37;Dels=0.00;FS=27.233;HaplotypeScore=21.3712;MLEAC=1;MLEAF=0.500;MQ=45.10;MQ0=0;MQRankSum=-3.547;QD=0.31;ReadPosRankSum=-2.561;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:24,13:37:41:41,0,319 chrIV 995820 . G A 159.03 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=17.8608;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=4.19;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:24:192,24,0 chrIV 995837 . T C 771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;MQRankSum=-0.289;QD=15.73;ReadPosRankSum=1.660;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:93:804,93,0 chrIV 995898 . C T 1464 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.33;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1497,162,0 chrIV 996015 . A G 1870 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=22.53;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1903,216,0 chrIV 996022 . A G 1706 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=20.07;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1739,207,0 chrIV 996542 . G A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.24;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3292,363,0 chrIV 996692 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.91;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2229,246,0 chrIV 996740 . T G 2903 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.99;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2936,336,0 chrIV 997121 . G A 4739.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4739,519,0 chrIV 997472 . A G 3770.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.57;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3770,441,0 chrIV 997511 . T A 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.624;QD=23.83;ReadPosRankSum=1.712;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4099,456,0 chrIV 997571 . C T 3663.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3663,405,0 chrIV 998004 . G T 6251.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=16.1243;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.90;SB=-3.048e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:6251,690,0 chrIV 998075 . T A 5704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=253;Dels=0.00;FS=2.949;HaplotypeScore=17.5034;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.258;QD=22.55;ReadPosRankSum=2.430;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:2,250:253:99:5704,630,0 chrIV 998350 . G T 3865.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=21.4377;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=19.82;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3865,417,0 chrIV 998484 . T C 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=0.433;QD=20.98;ReadPosRankSum=1.694;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:1,183:187:99:3924,453,0 chrIV 998627 . A T 2722 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;MQRankSum=-1.533;QD=15.55;ReadPosRankSum=1.712;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:2755,300,0 chrIV 998628 . A T 2661 SnpCluster AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=35.18;MQ0=0;QD=15.29;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2694,300,0 chrIV 998630 . T C 2525 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=34.98;MQ0=0;QD=14.60;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2558,294,0 chrIV 998631 . T A 2659 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=3.688;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=35.18;MQ0=0;MQRankSum=-1.252;QD=15.28;ReadPosRankSum=1.712;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:2692,297,0 chrIV 998635 . A G 2688 SnpCluster AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=0;QD=14.15;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:2721,309,0 chrIV 998658 . A G 2325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=193;Dels=0.00;FS=2.970;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=33.78;MQ0=0;MQRankSum=0.585;QD=12.05;ReadPosRankSum=2.424;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:2,189:193:99:2358,270,0 chrIV 998676 . T C 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=187;Dels=0.00;FS=3.128;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;MQRankSum=-1.454;QD=13.64;ReadPosRankSum=1.714;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:2584,306,0 chrIV 998712 . A C 2716 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=15.98;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2749,315,0 chrIV 998725 . C G 3136 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=18.56;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3169,369,0 chrIV 998786 . G A 3568.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.9841;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=21.76;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3568,381,0 chrIV 998825 . C T 4149.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=24.70;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4149,447,0 chrIV 998904 . G A 3922.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=22.03;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3922,435,0 chrIV 999271 . A G 3785.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.53;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3785,429,0 chrIV 999384 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.91;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2943,315,0 chrIV 999505 . T C 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.382;QD=21.96;ReadPosRankSum=1.707;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:3063,357,0 chrIV 999562 . A G 2789 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.79;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2822,318,0 chrIV 999724 . C T 4397.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.7543;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.16;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4397,477,0 chrIV 999930 . T C 2763 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.62;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2796,315,0 chrIV 999959 . G A 2338 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.87;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2371,255,0 chrIV 1000380 . G A 4267.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.32;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4267,474,0 chrIV 1000466 . G A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=18.0898;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.70;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3312,360,0 chrIV 1000829 . C T 2518 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2551,279,0 chrIV 1001844 . T C 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=3.609;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=0.244;QD=18.47;ReadPosRankSum=1.711;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3062,351,0 chrIV 1001864 . C T 3209 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=18.44;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3242,360,0 chrIV 1001889 . A T 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.2703;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-0.080;QD=15.95;ReadPosRankSum=2.376;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:2712,303,0 chrIV 1001907 . C T 2563 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.02;FS=0.000;HaplotypeScore=16.3786;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=14.99;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:2596,279,0 chrIV 1002119 . C A 2759 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.61;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2792,315,0 chrIV 1002178 . A G 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=12.1236;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.609;QD=22.12;ReadPosRankSum=1.701;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,112:116:99:2599,294,0 chrIV 1002382 . A G 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=149;Dels=0.00;FS=8.707;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.322;QD=23.34;ReadPosRankSum=2.417;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3477,408,0 chrIV 1002467 . C T 3419.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.60;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3419,366,0 chrIV 1002837 . A G 7350.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=370;Dels=0.00;FS=3.227;HaplotypeScore=16.6649;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.618;QD=19.86;ReadPosRankSum=1.704;SB=-4.425e+03 GT:AD:DP:GQ:PL 1/1:1,369:370:99:7350,854,0 chrIV 1003167 . A G 6132.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=30.4066;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=19.59;SB=-3.237e+03 GT:AD:DP:GQ:PL 1/1:0,310:313:99:6132,714,0 chrIV 1003263 . G A 3733.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=18.03;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3733,435,0 chrIV 1003272 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.696;QD=16.63;ReadPosRankSum=1.586;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:3593,411,0 chrIV 1003376 . A C 4609.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.39;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4609,516,0 chrIV 1003380 . C T 4325.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=19.14;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4325,495,0 chrIV 1003479 . C T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.9488;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.56;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3770,411,0 chrIV 1003693 . C A 2805 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.33;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2838,306,0 chrIV 1003809 . T C 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=129;Dels=0.00;FS=9.873;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=1.524;QD=19.38;ReadPosRankSum=2.914;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2533,285,0 chrIV 1003812 . T C 2539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=137;Dels=0.00;FS=10.139;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;MQRankSum=-0.474;QD=18.53;ReadPosRankSum=2.785;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:3,133:137:99:2572,291,0 chrIV 1003824 . C T 2803 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=20.61;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2836,324,0 chrIV 1003826 . C A 2813 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=20.09;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2846,309,0 chrIV 1003934 . T C 2917 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=20.26;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2950,333,0 chrIV 1003939 . G A 2842 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=19.74;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2875,309,0 chrIV 1003940 . G A 2839 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=20.13;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2872,309,0 chrIV 1004069 . C T 3086 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6761;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=23.03;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3119,351,0 chrIV 1004468 . A C 2616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-1.208;QD=17.21;ReadPosRankSum=1.709;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2649,309,0 chrIV 1004480 . T A 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=164;Dels=0.00;FS=7.307;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.442;QD=17.65;ReadPosRankSum=2.270;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:2927,318,0 chrIV 1004660 . A G 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.194;DP=120;Dels=0.00;FS=9.224;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=0.037;QD=20.85;ReadPosRankSum=3.370;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:4,116:120:99:2535,288,0 chrIV 1004996 . T C 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=146;Dels=0.00;FS=2.877;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.230;QD=22.84;ReadPosRankSum=1.460;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:2,142:146:99:3335,384,0 chrIV 1005047 . G A 3474.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.47;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3474,387,0 chrIV 1005151 . C T 4072.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.2491;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.09;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4072,450,0 chrIV 1005358 . C G 4160.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=19.0153;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.44;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4160,474,0 chrIV 1005614 . A G 4641.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.9227;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.89;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4641,543,0 chrIV 1005656 . G A 4110.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.7949;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.63;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4110,471,0 chrIV 1005728 . T C 4706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.7608;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.036;QD=23.65;ReadPosRankSum=1.662;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4706,540,0 chrIV 1005839 . T C 5428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.661;DP=245;Dels=0.00;FS=12.223;HaplotypeScore=17.1472;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=0.447;QD=22.16;ReadPosRankSum=3.777;SB=-3.003e+03 GT:AD:DP:GQ:PL 1/1:5,238:245:99:5428,615,0 chrIV 1006075 . C T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=19.37;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3389,366,0 chrIV 1006085 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=17.61;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3133,348,0 chrIV 1006148 . C A 3714.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.59;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3714,411,0 chrIV 1006388 . T C 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=119;Dels=0.00;FS=6.589;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.300;QD=21.60;ReadPosRankSum=2.408;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2603,303,0 chrIV 1006510 . G C 4401.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.31;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4401,495,0 chrIV 1006661 . A C 3894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=172;Dels=0.00;FS=5.880;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.639;QD=22.64;ReadPosRankSum=2.959;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:3,167:172:99:3894,438,0 chrIV 1006922 . T A 4097.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.0090;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.76;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4097,462,0 chrIV 1006998 . G A 3097 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.66;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3130,339,0 chrIV 1007012 . T G 2592 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.64;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2625,306,0 chrIV 1007414 . C T 2523 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2556,282,0 chrIV 1007597 . G A 3503.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.51;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3503,375,0 chrIV 1007834 . G T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3804;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.38;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3402,384,0 chrIV 1007850 . T C 3525.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.1667;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.89;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3525,396,0 chrIV 1007888 . T C 3876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=175;Dels=0.00;FS=9.182;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=0.259;QD=22.15;ReadPosRankSum=2.948;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:3876,444,0 chrIV 1008485 . A G 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=137;Dels=0.00;FS=2.940;HaplotypeScore=9.8678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.978;QD=19.63;ReadPosRankSum=2.414;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2722,315,0 chrIV 1008803 . C T 717 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=15.59;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:81:750,81,0 chrIV 1008843 . G A 693 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=14.14;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:81:726,81,0 chrIV 1008848 . C T 598 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=13.29;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:69:631,69,0 chrIV 1008896 . C T 1090 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=24.22;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1123,126,0 chrIV 1009126 . G A 2534 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=21.84;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2567,279,0 chrIV 1009135 . A T 2513 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=20.77;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2546,285,0 chrIV 1009143 . C A 2475 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=19.96;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2508,273,0 chrIV 1009163 . G A 2475 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=18.61;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2508,285,0 chrIV 1009315 . T C 2977 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.05;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3010,339,0 chrIV 1009366 . C T 3696.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.0366;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.40;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3696,405,0 chrIV 1009558 . G A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.16;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3698,405,0 chrIV 1009761 . C T 2665 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.91;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2698,291,0 chrIV 1009904 . G A 2057 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.88;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2090,231,0 chrIV 1009914 . C T 1882 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.91;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1915,210,0 chrIV 1009977 . A G 2308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=109;Dels=0.00;FS=3.666;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-0.016;QD=21.17;ReadPosRankSum=1.700;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:2341,267,0 chrIV 1010028 . G A 2721 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.67;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2754,303,0 chrIV 1010069 . A T 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=3.829;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.277;QD=24.06;ReadPosRankSum=1.662;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2439,273,0 chrIV 1010115 . G A 2290 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.5623;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.09;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2323,258,0 chrIV 1010124 . T C 2326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.342;DP=122;Dels=0.00;FS=13.964;HaplotypeScore=4.1329;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.892;QD=19.07;ReadPosRankSum=3.327;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:4,117:122:99:2359,273,0 chrIV 1010221 . A G 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.423;QD=23.38;ReadPosRankSum=1.629;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2418,276,0 chrIV 1010256 . T C 2319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.255;QD=21.28;ReadPosRankSum=1.669;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2352,273,0 chrIV 1010478 . A G 2159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=103;Dels=0.00;FS=3.003;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.064;QD=20.96;ReadPosRankSum=2.354;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2192,249,0 chrIV 1010565 . T C 2364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=120;Dels=0.00;FS=6.507;HaplotypeScore=7.4576;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.277;QD=19.70;ReadPosRankSum=2.388;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2397,282,0 chrIV 1010668 . T G 3289.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.01;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3289,372,0 chrIV 1010750 . A G 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=4.898;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.386;QD=23.62;ReadPosRankSum=1.657;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3307,378,0 chrIV 1011237 . G A 6634.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=17.9915;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.26;SB=-2.882e+03 GT:AD:DP:GQ:PL 1/1:0,295:298:99:6634,726,0 chrIV 1011299 . C G 6301.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=14.0923;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.80;SB=-3.381e+03 GT:AD:DP:GQ:PL 1/1:0,286:289:99:6301,720,0 chrIV 1011319 . G A 5436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=258;Dels=0.00;FS=3.271;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-0.034;QD=21.07;ReadPosRankSum=1.597;SB=-3.191e+03 GT:AD:DP:GQ:PL 1/1:1,256:258:99:5436,588,0 chrIV 1011332 . C A 5251.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.17;SB=-3.055e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5251,568,0 chrIV 1011421 . C T 4729.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.4836;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.74;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,204:208:99:4729,525,0 chrIV 1011449 . C T 4810.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.80;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4810,540,0 chrIV 1011562 . T C 4443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=216;Dels=0.00;FS=3.051;HaplotypeScore=14.0366;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.409;QD=20.57;ReadPosRankSum=1.716;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:1,211:216:99:4443,510,0 chrIV 1011655 . C A 3766.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=23.0803;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.90;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3766,411,0 chrIV 1011699 . C T 5817.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=14.7433;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=25.07;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5817,625,0 chrIV 1011753 . C G 7177.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=38.3194;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.43;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,316:320:99:7177,828,0 chrIV 1011936 . A T 4423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.6419;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.252;QD=19.75;ReadPosRankSum=1.716;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:1,223:224:99:4423,486,0 chrIV 1011970 . A G 4365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.4955;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.366;QD=19.31;ReadPosRankSum=2.286;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:2,223:226:99:4365,486,0 chrIV 1011981 . G A 4809.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=4.2110;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.57;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4809,531,0 chrIV 1012073 . G A 2499 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.02;FS=0.000;HaplotypeScore=18.0618;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.85;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2532,279,0 chrIV 1013385 . T G 1306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=16.9341;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-1.051;QD=12.21;ReadPosRankSum=2.930;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:3,97:107:99:1339,156,0 chrIV 1013623 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-0.139;QD=22.44;ReadPosRankSum=1.709;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3366,381,0 chrIV 1013843 . G A 472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=6.134;DP=116;Dels=0.00;FS=19.430;HaplotypeScore=153.5534;MLEAC=2;MLEAF=1.00;MQ=36.74;MQ0=0;MQRankSum=3.002;QD=4.07;ReadPosRankSum=-8.442;SB=-5.100e+01 GT:AD:DP:GQ:PL 1/1:68,37:116:54:505,54,0 chrIV 1013924 . A G 2472 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=17.91;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2505,288,0 chrIV 1013956 . G A 3200 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=19.75;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3233,354,0 chrIV 1013982 . C T 61.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;DP=175;Dels=0.00;FS=2.697;HaplotypeScore=156.2801;MLEAC=1;MLEAF=0.500;MQ=49.80;MQ0=0;MQRankSum=-1.872;QD=0.35;ReadPosRankSum=-5.007;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:164,11:175:65:91,0,65 chrIV 1013983 . C T 58.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.449;DP=176;Dels=0.00;FS=2.702;HaplotypeScore=156.2801;MLEAC=1;MLEAF=0.500;MQ=49.87;MQ0=0;MQRankSum=1.968;QD=0.33;ReadPosRankSum=5.274;SB=-1.902e+03 GT:AD:DP:GQ:PL 0/1:11,165:176:65:88,0,65 chrIV 1014069 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=20.24;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3009,327,0 chrIV 1014073 . A G 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=149;Dels=0.00;FS=2.969;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;MQRankSum=1.526;QD=19.48;ReadPosRankSum=2.384;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2935,330,0 chrIV 1014286 . C T 2237 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.93;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2270,246,0 chrIV 1014400 . T A 1659 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.55;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1692,189,0 chrIV 1014713 . G T 2870 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.52;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2903,321,0 chrIV 1014863 . C A 3105 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3138,366,0 chrIV 1015301 . G A 3888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=177;Dels=0.00;FS=3.346;HaplotypeScore=10.4741;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=21.97;ReadPosRankSum=1.673;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3888,429,0 chrIV 1015598 . G A 4413.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.2611;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.63;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4413,501,0 chrIV 1015630 . T A 3733.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.7022;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.70;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3733,414,0 chrIV 1015740 . T G 3675.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.41;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3675,420,0 chrIV 1015807 . A G 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=0.870;QD=20.90;ReadPosRankSum=2.410;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2604,297,0 chrIV 1015826 . T A 2411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=6.097;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=1.185;QD=21.15;ReadPosRankSum=1.702;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2444,270,0 chrIV 1015888 . T A 2037 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.00;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2070,222,0 chrIV 1015897 . C T 2022 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.06;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2055,231,0 chrIV 1016050 . T C 1464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.997;DP=82;Dels=0.00;FS=8.875;HaplotypeScore=3.8124;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.011;QD=17.85;ReadPosRankSum=3.259;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:4,77:82:99:1497,174,0 chrIV 1016056 . C T 1757 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3586;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.92;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1790,201,0 chrIV 1016282 . C T 2800 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.14;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2833,324,0 chrIV 1016426 . C A 2704 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.16;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2737,300,0 chrIV 1016597 . A G 2766 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=20.80;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2799,330,0 chrIV 1016644 . A G 2540 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.4912;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.65;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2573,291,0 chrIV 1016685 . A G 2175 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=19.59;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2208,252,0 chrIV 1016821 . A T 1272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.626;DP=89;Dels=0.00;FS=2.606;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;MQRankSum=1.921;QD=14.29;ReadPosRankSum=2.830;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:3,86:89:99:1305,147,0 chrIV 1016858 . T A 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=11.4963;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.737;QD=21.10;ReadPosRankSum=1.698;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2185,237,0 chrIV 1017008 . A G 1630 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=20.90;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1663,189,0 chrIV 1017015 . G T 1660 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=20.24;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1693,183,0 chrIV 1017026 . T G 1621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=0.179;QD=18.42;ReadPosRankSum=1.613;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1654,186,0 chrIV 1017181 . A G 2327 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.37;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2360,267,0 chrIV 1017610 . A C 2142 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.31;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2175,249,0 chrIV 1017759 . G T 2872 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.13;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2905,324,0 chrIV 1017855 . T A 3057 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.70;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3090,348,0 chrIV 1017915 . T C 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.147;QD=24.13;ReadPosRankSum=1.683;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3427,381,0 chrIV 1018014 . A T 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=3.602;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.556;QD=24.04;ReadPosRankSum=1.711;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3990,441,0 chrIV 1018111 . C G 3475.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=21.99;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3475,396,0 chrIV 1018116 . T C 3221.92 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.62;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3255,381,0 chrIV 1018236 . T C 3199 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.06;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3232,366,0 chrIV 1018321 . C A 2716 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=13.7020;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.82;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2749,309,0 chrIV 1018564 . C A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3509,381,0 chrIV 1018647 . G A 3044 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3077,333,0 chrIV 1018753 . A G 2340 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2373,267,0 chrIV 1018804 . C T 2206 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,92:95:99:2239,243,0 chrIV 1019082 . T C 2264 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.10;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2297,255,0 chrIV 1019310 . T C 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=121;Dels=0.00;FS=3.010;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.518;QD=21.50;ReadPosRankSum=2.409;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2634,300,0 chrIV 1019506 . A G 3629.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.13;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3629,405,0 chrIV 1019535 . A G 2800 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=20.74;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2833,318,0 chrIV 1019958 . T C 3322.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3322,387,0 chrIV 1020075 . A T 2682 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.58;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2715,300,0 chrIV 1020081 . A T 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.4380;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=0.835;QD=20.11;ReadPosRankSum=-0.685;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2828,306,0 chrIV 1020194 . C T 2960 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.09;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2993,333,0 chrIV 1020315 . G C 2628 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.72;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2661,312,0 chrIV 1020456 . A T 2948 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.68;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2981,339,0 chrIV 1020493 . C A 2353 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.07;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2386,261,0 chrIV 1020625 . G A 2710 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=21.68;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2743,309,0 chrIV 1020636 . A G 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=3.045;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-1.678;QD=21.07;ReadPosRankSum=1.705;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2709,309,0 chrIV 1021040 . G A 3613.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2118;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.58;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3613,399,0 chrIV 1021208 . C T 3655.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.29;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3655,408,0 chrIV 1021460 . G A 4310.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.1252;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.42;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4310,474,0 chrIV 1022417 . A G 3354.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.13;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3354,381,0 chrIV 1022660 . T A 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.615;QD=21.92;ReadPosRankSum=1.673;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2642,288,0 chrIV 1022874 . A G 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=178;Dels=0.00;FS=3.763;HaplotypeScore=16.2354;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=0.197;QD=21.65;ReadPosRankSum=1.712;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:3854,453,0 chrIV 1023018 . A G 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.2330;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=-0.169;QD=21.96;ReadPosRankSum=1.626;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3602,411,0 chrIV 1023058 . C G 3486.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=22.64;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3486,390,0 chrIV 1023474 . A T 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=7.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:46,6,0 chrIV 1023476 . C T 41.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=10.49;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:74,9,0 chrIV 1023657 . A G 2764 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=24.46;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2797,315,0 chrIV 1024035 . C A 3061 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.51;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3094,351,0 chrIV 1024375 . C A 4765.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.6471;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.58;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4765,510,0 chrIV 1024582 . A C 4031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=3.330;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.562;QD=22.03;ReadPosRankSum=1.713;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4031,456,0 chrIV 1024632 . G T 4447.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.16;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4447,480,0 chrIV 1024985 . A G 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.430;QD=21.26;ReadPosRankSum=1.654;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2861,339,0 chrIV 1025085 . G A 3394.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.6738;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.93;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3394,378,0 chrIV 1025323 . T C 4127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.450;QD=22.31;ReadPosRankSum=1.581;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4127,474,0 chrIV 1025748 . G A 3533.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3533,393,0 chrIV 1025949 . G A 4717.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.6047;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4717,525,0 chrIV 1026600 . T A 3141 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3174,345,0 chrIV 1026759 . A T 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.518;QD=23.84;ReadPosRankSum=1.530;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3290,363,0 chrIV 1026927 . G A 3631.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.01;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3631,396,0 chrIV 1026933 . G C 3532.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.30;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3532,396,0 chrIV 1027140 . A T 3487.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.5744;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.88;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3487,390,0 chrIV 1027623 . A G 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.580;DP=132;Dels=0.00;FS=2.320;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.321;QD=20.38;ReadPosRankSum=1.374;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2723,321,0 chrIV 1027653 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.5187;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.18;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2699,300,0 chrIV 1027767 . A G 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.9188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.633;QD=22.76;ReadPosRankSum=1.683;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3220,363,0 chrIV 1028486 . G A 3751.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3751,408,0 chrIV 1028937 . A G 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=6.283;HaplotypeScore=8.2883;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.040;QD=22.51;ReadPosRankSum=2.417;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3444,393,0 chrIV 1029103 . G A 2933 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.25;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2966,324,0 chrIV 1029540 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.86;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3279,348,0 chrIV 1029549 . T C 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=145;Dels=0.00;FS=6.611;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=0.619;QD=19.47;ReadPosRankSum=2.365;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2856,324,0 chrIV 1029732 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.7706;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.11;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2735,318,0 chrIV 1030124 . C T 2617 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.18;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2650,300,0 chrIV 1030215 . G A 2829 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=23.00;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2862,315,0 chrIV 1030251 . C T 2804 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=22.61;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2837,312,0 chrIV 1030287 . T C 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.909;QD=23.19;ReadPosRankSum=1.647;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2862,327,0 chrIV 1030401 . C T 1917 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.45;MQ0=0;QD=14.86;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1950,222,0 chrIV 1030402 . C A 1997 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.45;MQ0=0;QD=15.48;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2030,222,0 chrIV 1030406 . G A 1838 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=14.82;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1871,207,0 chrIV 1030407 . A T 1768 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=14.26;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1801,204,0 chrIV 1030428 . A C 2256 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=14.55;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2289,258,0 chrIV 1030607 . G C 3976.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=23.25;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3976,450,0 chrIV 1030801 . G A 4476.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4476,483,0 chrIV 1030955 . G A 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=157;Dels=0.00;FS=3.708;HaplotypeScore=9.4762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.352;QD=21.72;ReadPosRankSum=-0.503;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3410,372,0 chrIV 1031168 . G A 4901.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=15.1628;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.80;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4901,555,0 chrIV 1031318 . T G 4295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=202;Dels=0.00;FS=4.111;HaplotypeScore=14.1833;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.732;QD=21.26;ReadPosRankSum=1.663;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4295,501,0 chrIV 1031350 . A G 4182.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.01;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4182,477,0 chrIV 1031473 . C T 4239.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.96;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4239,462,0 chrIV 1031550 . T A 3000 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3033,324,0 chrIV 1031637 . A G 2811 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.98;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2844,327,0 chrIV 1031723 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3058,330,0 chrIV 1031974 . G A 2905 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.8909;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.36;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2938,327,0 chrIV 1032015 . T C 2739 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7166;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.02;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2772,318,0 chrIV 1032120 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3098,345,0 chrIV 1032245 . C T 2472 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.13;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2505,282,0 chrIV 1032507 . C T 2504 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.3158;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.36;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2537,285,0 chrIV 1033062 . A G 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=145;Dels=0.00;FS=6.111;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.822;QD=21.19;ReadPosRankSum=2.348;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3105,351,0 chrIV 1033176 . G A 1890 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=13.80;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1923,207,0 chrIV 1033297 . A C 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.673;QD=23.18;ReadPosRankSum=1.673;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2768,315,0 chrIV 1033434 . A G 2902 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.39;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2935,330,0 chrIV 1033545 . A C 3923.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.0577;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.92;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3923,447,0 chrIV 1033569 . G T 3870.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.90;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3870,423,0 chrIV 1033590 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.10;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3566,414,0 chrIV 1033712 . A C 5209.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=14.3847;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.57;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:5209,594,0 chrIV 1033864 . A C 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=1.443;QD=21.82;ReadPosRankSum=2.396;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:4014,459,0 chrIV 1033891 . G C 3800.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.22;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,164:171:99:3800,429,0 chrIV 1033951 . T C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=4.454;HaplotypeScore=14.8613;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.087;QD=21.55;ReadPosRankSum=1.708;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3180,351,0 chrIV 1034115 . A G 1684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-0.652;QD=15.31;ReadPosRankSum=1.637;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:1717,198,0 chrIV 1034116 . A G 1674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.093;DP=111;Dels=0.00;FS=9.096;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=-0.846;QD=15.08;ReadPosRankSum=3.236;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:4,107:111:99:1707,195,0 chrIV 1034253 . C T 2411 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2444,273,0 chrIV 1034463 . A G 2770 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2803,318,0 chrIV 1034538 . T C 2757 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.1205;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2790,327,0 chrIV 1034709 . T C 2563 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.18;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2596,303,0 chrIV 1034852 . C G 2898 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.15;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2931,336,0 chrIV 1034904 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.0134;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.53;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3116,333,0 chrIV 1035084 . A G 2779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=16.3520;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.188;QD=22.97;ReadPosRankSum=1.703;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2812,318,0 chrIV 1035309 . A G 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=170;Dels=0.00;FS=8.666;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.527;QD=21.73;ReadPosRankSum=2.421;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3694,423,0 chrIV 1035606 . C T 3167 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=19.67;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3200,348,0 chrIV 1035627 . T C 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=158;Dels=0.00;FS=6.162;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=38.79;MQ0=0;MQRankSum=-1.095;QD=16.62;ReadPosRankSum=2.402;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:2659,303,0 chrIV 1035668 . T C 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=172;Dels=0.00;FS=10.396;HaplotypeScore=137.6772;MLEAC=2;MLEAF=1.00;MQ=33.13;MQ0=0;MQRankSum=-2.714;QD=14.89;ReadPosRankSum=2.842;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:2594,291,0 chrIV 1035697 . A C 3044 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=16.91;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3077,345,0 chrIV 1035801 . T C 4292.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.8573;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=23.45;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4292,483,0 chrIV 1035891 . C T 3398.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=20.98;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3398,381,0 chrIV 1035987 . T C 3497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=155;Dels=0.00;FS=7.531;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.056;QD=22.56;ReadPosRankSum=2.402;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3497,399,0 chrIV 1036063 . A C 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.233;DP=157;Dels=0.00;FS=5.268;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.254;QD=19.59;ReadPosRankSum=3.244;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:4,151:157:99:3109,360,0 chrIV 1036126 . C G 3305.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.48;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3305,375,0 chrIV 1036179 . A C 3166 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.2766;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.45;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3199,366,0 chrIV 1036257 . G A 3070 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3103,333,0 chrIV 1036312 . C T 3215 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.17;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3248,348,0 chrIV 1036351 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.24;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2879,312,0 chrIV 1036384 . C T 2473 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.96;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2506,270,0 chrIV 1036426 . C T 2434 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.98;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2467,267,0 chrIV 1036669 . T C 4541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.0864;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.821;QD=23.41;ReadPosRankSum=1.714;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4541,522,0 chrIV 1036886 . G A 3888.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=17.9663;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.72;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3888,429,0 chrIV 1037080 . G A 2991 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=20.49;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3024,327,0 chrIV 1037205 . T C 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.277;HaplotypeScore=5.6555;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.204;QD=21.24;ReadPosRankSum=1.709;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3240,372,0 chrIV 1037262 . A G 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-1.674;QD=22.97;ReadPosRankSum=1.703;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2789,312,0 chrIV 1037347 . A G 2998 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.79;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3031,345,0 chrIV 1037511 . G A 2751 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2784,303,0 chrIV 1037652 . C A 2608 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2641,282,0 chrIV 1037710 . G A 3009 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3042,327,0 chrIV 1037923 . G A 2996 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3029,345,0 chrIV 1037990 . C T 3129 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.0479;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.84;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3162,348,0 chrIV 1038058 . T C 2492 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=21.30;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2525,282,0 chrIV 1038059 . T C 2485 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=21.06;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2518,285,0 chrIV 1038316 . A G 3552.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8204;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=24.16;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3552,408,0 chrIV 1038463 . G A 4033.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.9743;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.68;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4033,456,0 chrIV 1038620 . C T 4493.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=16.7568;MLEAC=2;MLEAF=1.00;MQ=60.76;MQ0=0;QD=21.00;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4493,489,0 chrIV 1039385 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=149;Dels=0.00;FS=3.040;HaplotypeScore=10.0006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.025;QD=21.56;ReadPosRankSum=2.383;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3246,381,0 chrIV 1040343 . A G 2791 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.31;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2824,321,0 chrIV 1040424 . T G 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.246;DP=173;Dels=0.00;FS=5.207;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=1.417;QD=20.52;ReadPosRankSum=3.409;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:4,168:173:99:3550,405,0 chrIV 1040438 . G A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.2445;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.38;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3698,420,0 chrIV 1040471 . A G 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=185;Dels=0.00;FS=4.892;HaplotypeScore=8.3992;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.076;QD=20.54;ReadPosRankSum=1.713;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,181:185:99:3800,435,0 chrIV 1040522 . A G 4577.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.2445;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.96;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4577,539,0 chrIV 1040595 . A C 4317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.238;QD=20.86;ReadPosRankSum=1.698;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:1,203:207:99:4317,498,0 chrIV 1040643 . G A 3968.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=19.74;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:3968,441,0 chrIV 1040645 . A C 3852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=-0.112;QD=19.16;ReadPosRankSum=1.715;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:3852,441,0 chrIV 1040726 . T C 4216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=198;Dels=0.00;FS=4.092;HaplotypeScore=10.5115;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-1.501;QD=21.29;ReadPosRankSum=1.697;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,194:198:99:4216,477,0 chrIV 1040939 . A G 4446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=189;Dels=0.00;FS=7.144;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.548;QD=23.52;ReadPosRankSum=2.410;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:2,184:189:99:4446,501,0 chrIV 1041086 . T C 5030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=19.7130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.978;QD=22.36;ReadPosRankSum=1.640;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5030,579,0 chrIV 1041278 . G A 4656.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.88;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4656,504,0 chrIV 1041560 . G A 4018.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.72;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4018,450,0 chrIV 1041581 . A T 3781.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.11;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3781,423,0 chrIV 1041692 . A T 4332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=180;Dels=0.00;FS=3.522;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.231;QD=24.07;ReadPosRankSum=1.713;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4332,480,0 chrIV 1041853 . A G 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=135;Dels=0.00;FS=3.043;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.046;QD=18.70;ReadPosRankSum=2.357;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,131:135:99:2557,294,0 chrIV 1041863 . T A 2596 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=18.81;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2629,300,0 chrIV 1042394 . G A 3456.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.19;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3456,381,0 chrIV 1042427 . G T 3286.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.14;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3286,360,0 chrIV 1042469 . G A 2649 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=19.0142;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=19.20;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2682,306,0 chrIV 1042736 . A G 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.308;QD=21.87;ReadPosRankSum=1.711;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3564,408,0 chrIV 1042968 . T C 1707 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1740,201,0 chrIV 1043012 . T C 1679 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1712,195,0 chrIV 1043069 . A G 1518 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=19.71;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1551,183,0 chrIV 1043113 . G A 859 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=23.1635;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.03;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:892,102,0 chrIV 1043233 . A T 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.481;QD=23.50;ReadPosRankSum=1.564;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2148,240,0 chrIV 1043299 . G A 2007 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=25.09;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2040,222,0 chrIV 1043662 . A G 5169.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.2508;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.60;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5169,585,0 chrIV 1043887 . G A 4353.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.3832;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.53;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4353,486,0 chrIV 1043992 . T A 4152.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.32;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4152,453,0 chrIV 1044052 . T C 3208 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.39;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3241,369,0 chrIV 1044571 . G A 2696 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.85;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2729,294,0 chrIV 1044635 . C A 2756 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2789,309,0 chrIV 1044721 . C T 2002 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.41;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2035,222,0 chrIV 1044751 . G A 2151 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.13;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2184,240,0 chrIV 1045062 . A T 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.515;QD=23.81;ReadPosRankSum=1.709;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3547,387,0 chrIV 1045288 . T C 2038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=94;Dels=0.00;FS=10.537;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-1.205;QD=21.68;ReadPosRankSum=2.397;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:2,91:94:99:2071,234,0 chrIV 1045311 . G C 1650 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.43;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1683,201,0 chrIV 1045482 . C G 2573 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2606,297,0 chrIV 1045644 . A G 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.104;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.457;QD=21.75;ReadPosRankSum=0.620;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2686,287,0 chrIV 1045735 . A G 2540 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.34;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2573,297,0 chrIV 1045804 . A G 1741 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=19.13;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1774,201,0 chrIV 1045807 . C G 1646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=92;Dels=0.00;FS=3.159;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;MQRankSum=-0.915;QD=17.89;ReadPosRankSum=1.654;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:1,88:92:99:1679,189,0 chrIV 1045817 . G T 1800 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=18.00;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1833,198,0 chrIV 1045825 . T C 1792 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=17.23;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1825,207,0 chrIV 1045889 . A G 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=3.432;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.655;QD=19.86;ReadPosRankSum=1.703;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2436,273,0 chrIV 1045961 . G A 2014 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.20;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2047,231,0 chrIV 1046027 . A G 2897 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.28;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2930,345,0 chrIV 1046336 . G A 3905.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.11;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3905,450,0 chrIV 1046447 . C T 4041.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:4041,432,0 chrIV 1046579 . C T 2479 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=14.1922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.67;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2512,279,0 chrIV 1046738 . C T 2433 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.6788;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.72;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2466,267,0 chrIV 1046913 . G C 3167 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.78;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3200,366,0 chrIV 1046963 . G A 3592.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.4618;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.32;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3592,402,0 chrIV 1047046 . G A 3888.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.87;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3888,420,0 chrIV 1047071 . C T 3308.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.05;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3308,372,0 chrIV 1047131 . C T 3285.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.2696;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.53;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3285,372,0 chrIV 1047441 . G A 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=117;Dels=0.00;FS=6.086;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.578;QD=19.37;ReadPosRankSum=2.681;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2299,249,0 chrIV 1047443 . A G 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.775;DP=121;Dels=0.00;FS=6.108;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-1.809;QD=18.05;ReadPosRankSum=2.442;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2217,255,0 chrIV 1047620 . C G 4083.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.30;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4083,456,0 chrIV 1048193 . A T 4456.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.0754;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.32;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4456,486,0 chrIV 1048271 . G A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.59;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3822,420,0 chrIV 1048403 . A G 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.3045;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.453;QD=22.04;ReadPosRankSum=1.673;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:1,175:179:99:3945,453,0 chrIV 1048839 . C T 3688.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.63;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3688,402,0 chrIV 1048865 . T C 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-1.443;QD=19.12;ReadPosRankSum=1.629;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3246,369,0 chrIV 1048868 . C T 3314.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=19.96;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3314,366,0 chrIV 1048988 . G A 4702.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.16;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4702,531,0 chrIV 1049075 . A G 6126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=259;Dels=0.00;FS=12.612;HaplotypeScore=16.1727;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.050;QD=23.65;ReadPosRankSum=2.903;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:3,256:259:99:6126,702,0 chrIV 1049195 . T C 5113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.038;QD=22.23;ReadPosRankSum=1.717;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:1,228:230:99:5113,579,0 chrIV 1050503 . C T 5287.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.01;FS=0.000;HaplotypeScore=13.5037;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=23.71;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5287,576,0 chrIV 1050824 . T C 4530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=18.9529;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.017;QD=21.57;ReadPosRankSum=1.698;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:1,205:210:99:4530,504,0 chrIV 1051023 . C T 3128 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=16.12;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3161,339,0 chrIV 1051068 . G A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=17.1404;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.08;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4489,489,0 chrIV 1051307 . T C 4154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=0.427;QD=20.07;ReadPosRankSum=1.715;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4154,471,0 chrIV 1051317 . A G 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.320;DP=215;Dels=0.00;FS=16.917;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=0.704;QD=17.62;ReadPosRankSum=3.353;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:4,208:215:99:3789,435,0 chrIV 1051452 . T C 4677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.996;DP=218;Dels=0.00;FS=19.392;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.381;QD=21.45;ReadPosRankSum=4.083;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:6,208:218:99:4677,546,0 chrIV 1051506 . T C 5471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.738;DP=257;Dels=0.00;FS=10.540;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=1.043;QD=21.29;ReadPosRankSum=2.887;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:3,254:257:99:5471,630,0 chrIV 1052088 . G A 4195.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.31;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4195,471,0 chrIV 1052614 . A C 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=98;Dels=0.00;FS=7.011;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.490;QD=22.17;ReadPosRankSum=2.374;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2206,255,0 chrIV 1052765 . C T 2069 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9413;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2102,228,0 chrIV 1052996 . T C 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=3.144;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=1.662;QD=19.29;ReadPosRankSum=1.697;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1943,225,0 chrIV 1053054 . A C 1941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-0.292;QD=19.03;ReadPosRankSum=1.664;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:1974,228,0 chrIV 1053228 . C T 3490.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=23.90;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3490,375,0 chrIV 1053286 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=23.18;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3547,390,0 chrIV 1053301 . G A 3649.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.12;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3649,402,0 chrIV 1053397 . G A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4020;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=21.99;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3299,351,0 chrIV 1053414 . A G 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=-0.195;QD=20.22;ReadPosRankSum=1.686;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3086,351,0 chrIV 1053442 . A G 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-1.048;QD=16.90;ReadPosRankSum=1.711;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:2788,321,0 chrIV 1053445 . C T 2905 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=17.82;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2938,324,0 chrIV 1053698 . C T 4062.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.04;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4062,447,0 chrIV 1053747 . A G 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.269;DP=140;Dels=0.00;FS=15.453;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.573;QD=22.57;ReadPosRankSum=3.395;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:4,135:140:99:3193,363,0 chrIV 1053891 . A G 3814.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3814,432,0 chrIV 1053946 . C T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3252,357,0 chrIV 1054066 . T G 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=129;Dels=0.00;FS=3.018;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.028;QD=22.81;ReadPosRankSum=2.373;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2975,342,0 chrIV 1054503 . C T 3127 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.85;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3160,357,0 chrIV 1054527 . T G 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=3.785;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=1.257;QD=20.77;ReadPosRankSum=1.664;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3211,366,0 chrIV 1054662 . A C 2209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=1.036;QD=21.87;ReadPosRankSum=2.328;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2242,255,0 chrIV 1054827 . T G 1052 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=16.18;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1085,123,0 chrIV 1054894 . C A 751 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=17.88;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:87:784,87,0 chrIV 1055204 . G A 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=3.482;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=1.095;QD=19.04;ReadPosRankSum=1.681;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2641,291,0 chrIV 1055502 . C T 5868.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.47;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5868,634,0 chrIV 1056052 . A G 3474.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.99;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3474,408,0 chrIV 1056448 . T C 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.687;QD=19.64;ReadPosRankSum=1.665;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3057,357,0 chrIV 1056580 . C G 4461.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=17.6634;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.04;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4461,528,0 chrIV 1057324 . A C 5134.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=16.2407;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.57;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5134,579,0 chrIV 1057517 . G A 3816.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.32;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3816,417,0 chrIV 1057799 . T C 1580 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7498;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.26;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1613,189,0 chrIV 1058083 . A G 1543 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1576,180,0 chrIV 1058179 . A G 2336 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2369,267,0 chrIV 1058218 . T C 2364 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2397,270,0 chrIV 1058755 . T C 3439.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.4780;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3439,393,0 chrIV 1058864 . C T 2649 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.07;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2682,294,0 chrIV 1059045 . A T 2140 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.53;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2173,243,0 chrIV 1059152 . A G 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-0.206;QD=20.40;ReadPosRankSum=1.644;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2461,279,0 chrIV 1059154 . A G 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=0.152;QD=19.92;ReadPosRankSum=1.702;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2344,270,0 chrIV 1059207 . T A 2379 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.24;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2412,258,0 chrIV 1059253 . T A 3082 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.71;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3115,348,0 chrIV 1059313 . A G 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=117;Dels=0.00;FS=3.961;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-0.489;QD=20.03;ReadPosRankSum=-0.104;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2377,249,0 chrIV 1059324 . A G 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-0.810;QD=18.99;ReadPosRankSum=1.700;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2103,240,0 chrIV 1059380 . C A 1399 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=14.42;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1432,159,0 chrIV 1059396 . G T 1876 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=18.04;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1909,207,0 chrIV 1059445 . A T 2935 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=20.52;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2968,324,0 chrIV 1059534 . T A 2734 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.41;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2767,315,0 chrIV 1059598 . T C 2402 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=20.02;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2435,285,0 chrIV 1059600 . T A 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=0.509;QD=21.61;ReadPosRankSum=1.703;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2604,279,0 chrIV 1059662 . C T 3717.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=22.39;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3717,411,0 chrIV 1059939 . G A 124.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.102;DP=281;Dels=0.00;FS=0.916;HaplotypeScore=20.1347;MLEAC=1;MLEAF=0.500;MQ=41.85;MQ0=0;MQRankSum=-2.619;QD=0.44;ReadPosRankSum=-6.405;SB=-1.273e+03 GT:AD:DP:GQ:PL 0/1:151,129:281:99:154,0,2363 chrIV 1060010 . T C 3087 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=18.60;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3120,360,0 chrIV 1060244 . C T 2816 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.70;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2849,309,0 chrIV 1060655 . C T 4126.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.2069;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.18;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4126,462,0 chrIV 1061183 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.8459;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.20;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3230,357,0 chrIV 1061386 . A G 2585 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2618,309,0 chrIV 1061634 . T C 3405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.7610;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.917;QD=21.83;ReadPosRankSum=1.664;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,152:156:99:3405,387,0 chrIV 1062037 . C T 4982.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.30;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4982,543,0 chrIV 1062093 . C G 4572.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.09;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4572,522,0 chrIV 1062201 . G A 4467.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4467,486,0 chrIV 1062627 . G A 6207.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=10.1553;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.01;SB=-3.172e+03 GT:AD:DP:GQ:PL 1/1:0,282:282:99:6207,705,0 chrIV 1062869 . T C 4416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=194;Dels=0.00;FS=14.315;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.120;QD=22.76;ReadPosRankSum=2.953;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:3,190:194:99:4416,498,0 chrIV 1062952 . C T 3551.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.41;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3551,396,0 chrIV 1063008 . G A 3894.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=20.82;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3894,441,0 chrIV 1063031 . C G 3758.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.35;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3758,438,0 chrIV 1063052 . T C 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=177;Dels=0.00;FS=2.652;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=1.078;QD=19.42;ReadPosRankSum=2.421;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:2,170:177:99:3437,396,0 chrIV 1063171 . C T 4099.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.24;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4099,444,0 chrIV 1063173 . C T 3872.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=18.18;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:3872,435,0 chrIV 1063215 . C T 4469.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.7454;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.52;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:4469,492,0 chrIV 1063849 . T C 4449.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.25;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,195:200:99:4449,525,0 chrIV 1064173 . C G 2694 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=11.0120;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.97;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2727,309,0 chrIV 1064285 . G A 3855.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.0889;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.07;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3855,414,0 chrIV 1064506 . T C 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=147;Dels=0.00;FS=5.867;HaplotypeScore=7.7176;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.662;QD=23.22;ReadPosRankSum=2.911;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:3,143:147:99:3414,387,0 chrIV 1064800 . A G 4336.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.12;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4336,510,0 chrIV 1065082 . G T 3174 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.88;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3207,363,0 chrIV 1065349 . G A 3288.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.49;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3288,357,0 chrIV 1065469 . T C 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=117;Dels=0.00;FS=2.965;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.623;QD=21.07;ReadPosRankSum=2.322;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2498,294,0 chrIV 1066159 . T C 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=3.238;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.190;QD=22.17;ReadPosRankSum=1.682;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3070,357,0 chrIV 1066225 . A G 3608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.044;QD=23.13;ReadPosRankSum=1.688;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3608,408,0 chrIV 1066372 . C T 2929 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2962,327,0 chrIV 1066840 . C T 2861 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2894,327,0 chrIV 1067143 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=172;Dels=0.00;FS=2.937;HaplotypeScore=8.2505;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.393;QD=22.24;ReadPosRankSum=2.421;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3826,435,0 chrIV 1067351 . C A 4198.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.7694;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4198,453,0 chrIV 1067784 . C T 3390.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.8555;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.22;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3390,378,0 chrIV 1068162 . A T 4067.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.07;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4067,438,0 chrIV 1068192 . A G 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.460;QD=20.42;ReadPosRankSum=1.709;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3035,354,0 chrIV 1068460 . G A 842 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.05;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:99:875,99,0 chrIV 1068544 . G A 938 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.05;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:99:971,105,0 chrIV 1068605 . T C 889 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.91;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:922,108,0 chrIV 1068819 . T A 1917 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.38;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1950,213,0 chrIV 1069377 . T C 2491 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2524,285,0 chrIV 1069494 . G A 2043 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.64;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2076,234,0 chrIV 1069872 . T A 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=153;Dels=0.00;FS=4.279;HaplotypeScore=14.3349;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.531;QD=21.13;ReadPosRankSum=1.640;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3266,351,0 chrIV 1069993 . A G 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=132;Dels=0.00;FS=3.043;HaplotypeScore=6.8861;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.605;QD=22.48;ReadPosRankSum=2.412;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3001,345,0 chrIV 1070142 . A G 3510.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.72;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3510,396,0 chrIV 1071404 . G A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.21;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3287,369,0 chrIV 1071558 . A G 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=158;Dels=0.00;FS=4.250;HaplotypeScore=14.0376;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.320;QD=23.32;ReadPosRankSum=1.710;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3685,423,0 chrIV 1071756 . C T 5092.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.7123;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.84;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5092,549,0 chrIV 1072450 . G C 4293.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.5239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.84;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4293,498,0 chrIV 1072765 . C T 3028 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.03;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3061,333,0 chrIV 1073588 . C T 2650 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=21.03;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2683,303,0 chrIV 1073617 . A G 1805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=104;Dels=0.00;FS=3.051;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;MQRankSum=-1.053;QD=17.36;ReadPosRankSum=2.402;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1838,210,0 chrIV 1073642 . A G 1721 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=2.973;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=0;MQRankSum=-1.858;QD=16.55;ReadPosRankSum=2.379;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1754,198,0 chrIV 1073647 . A G 1620 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.66;MQ0=0;QD=14.86;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1653,186,0 chrIV 1073650 . T A 1692 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=112;Dels=0.00;FS=6.880;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.18;MQ0=0;MQRankSum=-2.098;QD=15.11;ReadPosRankSum=2.362;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1725,189,0 chrIV 1073654 . T C 1639 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=114;Dels=0.00;FS=6.372;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;MQRankSum=-1.867;QD=14.38;ReadPosRankSum=2.407;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:1672,186,0 chrIV 1073936 . G A 3342.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.7652;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.05;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3342,357,0 chrIV 1074154 . T C 3292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.538;QD=23.02;ReadPosRankSum=1.684;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3292,378,0 chrIV 1074407 . C T 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.8819;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.417;QD=22.02;ReadPosRankSum=1.476;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2477,282,0 chrIV 1074437 . T C 2096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=98;Dels=0.00;FS=6.620;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.364;QD=21.39;ReadPosRankSum=2.400;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2129,243,0 chrIV 1074500 . A G 2416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=-0.238;QD=22.17;ReadPosRankSum=1.669;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2449,282,0 chrIV 1074515 . T C 2365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=3.288;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=-1.609;QD=20.75;ReadPosRankSum=1.701;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2398,273,0 chrIV 1074527 . G A 2609 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=22.11;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2642,285,0 chrIV 1074630 . C T 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.967;DP=108;Dels=0.00;FS=7.387;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;MQRankSum=1.277;QD=22.29;ReadPosRankSum=1.875;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2440,270,0 chrIV 1074638 . A G 2440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=3.464;HaplotypeScore=4.3316;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=-0.016;QD=21.79;ReadPosRankSum=1.701;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2473,279,0 chrIV 1074698 . T C 2036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=108;Dels=0.00;FS=3.046;HaplotypeScore=6.9705;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=-0.360;QD=18.85;ReadPosRankSum=2.357;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2069,234,0 chrIV 1074737 . A G 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=104;Dels=0.00;FS=3.554;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=-0.475;QD=18.99;ReadPosRankSum=1.698;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2008,231,0 chrIV 1074754 . C T 2246 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=20.42;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2279,252,0 chrIV 1074776 . T G 2680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=136;Dels=0.00;FS=2.578;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=1.111;QD=19.71;ReadPosRankSum=2.948;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2713,321,0 chrIV 1074842 . T C 3798.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.34;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3798,444,0 chrIV 1074890 . T C 2780 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=18.17;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2813,321,0 chrIV 1074897 . C T 2899 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.59;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2932,321,0 chrIV 1074927 . G A 2426 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=17.84;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2459,282,0 chrIV 1075079 . C T 3902.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.68;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3902,432,0 chrIV 1075290 . A G 3400.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.94;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3400,387,0 chrIV 1075328 . C T 3161 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.7451;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.27;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3194,354,0 chrIV 1075347 . A G 2575 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=17.76;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2608,300,0 chrIV 1075360 . A T 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=0.509;QD=17.84;ReadPosRankSum=1.619;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2762,315,0 chrIV 1075419 . A G 2754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=139;Dels=0.00;FS=6.575;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=-1.042;QD=19.81;ReadPosRankSum=2.378;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2787,318,0 chrIV 1075428 . G A 2920 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.2086;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.71;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2953,339,0 chrIV 1075561 . G A 4369.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.8114;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=23.36;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4369,474,0 chrIV 1075570 . T G 3283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=-1.221;QD=20.65;ReadPosRankSum=1.621;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,155:159:99:3283,378,0 chrIV 1075592 . T A 3126 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.6661;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=21.56;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3159,345,0 chrIV 1075670 . C G 3603.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.9348;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=18.38;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:3603,423,0 chrIV 1075710 . G A 3552.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.03;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3552,396,0 chrIV 1075724 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=195;Dels=0.00;FS=5.888;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-1.107;QD=16.46;ReadPosRankSum=1.714;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:3243,369,0 chrIV 1075739 . T C 3209 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=16.89;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3242,372,0 chrIV 1075812 . G A 3472.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=24.45;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3472,384,0 chrIV 1075857 . T C 2249 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.5067;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=18.74;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2282,264,0 chrIV 1075858 . A G 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.7287;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=0.404;QD=19.20;ReadPosRankSum=1.674;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2337,267,0 chrIV 1075948 . G T 2684 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.37;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2717,303,0 chrIV 1076035 . A G 2888 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.56;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2921,330,0 chrIV 1076423 . G T 2631 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.88;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2664,291,0 chrIV 1076654 . A G 3713.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.37;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3713,426,0 chrIV 1076688 . G A 2927 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=20.19;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2960,321,0 chrIV 1076910 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.0347;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.50;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3330,363,0 chrIV 1076926 . C T 3506.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.37;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3506,375,0 chrIV 1077079 . C T 3297.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.87;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3297,354,0 chrIV 1077082 . A G 2825 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=18.23;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:2858,324,0 chrIV 1077115 . G A 2849 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=18.87;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2882,324,0 chrIV 1077398 . T C 2863 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.34;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2896,327,0 chrIV 1077427 . T G 2801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=155;Dels=0.00;FS=8.379;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;MQRankSum=0.662;QD=18.07;ReadPosRankSum=1.987;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:2834,327,0 chrIV 1077428 . C T 2951 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=18.56;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2984,324,0 chrIV 1077453 . T C 2259 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=15.37;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2292,258,0 chrIV 1077466 . G A 2294 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2291;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=15.93;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2327,255,0 chrIV 1077840 . G T 2369 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=22.35;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2402,258,0 chrIV 1077851 . T C 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=0.620;QD=19.85;ReadPosRankSum=1.700;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2217,255,0 chrIV 1077896 . T C 2067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=107;Dels=0.00;FS=6.481;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-1.369;QD=19.32;ReadPosRankSum=2.381;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2100,240,0 chrIV 1077897 . T C 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=3.259;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-1.091;QD=19.26;ReadPosRankSum=1.636;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2113,240,0 chrIV 1078280 . T C 4281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=191;Dels=0.00;FS=2.946;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.472;QD=22.41;ReadPosRankSum=2.424;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4281,489,0 chrIV 1078458 . A G 4752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=210;Dels=0.00;FS=2.750;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.836;QD=22.63;ReadPosRankSum=2.391;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4752,537,0 chrIV 1078493 . C T 4127.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.01;FS=0.000;HaplotypeScore=165.8755;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.68;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4127,453,0 chrIV 1078620 . C T 3144 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.02;FS=0.000;HaplotypeScore=7.5793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3177,351,0 chrIV 1078734 . T A 2359 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.02;FS=0.000;HaplotypeScore=14.0422;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.13;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2392,264,0 chrIV 1078766 . T C 2991 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=24.32;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3024,342,0 chrIV 1078855 . T C 1791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=83;Dels=0.00;FS=8.364;HaplotypeScore=11.3425;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.015;QD=21.58;ReadPosRankSum=2.391;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1824,210,0 chrIV 1078957 . A T 1974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=90;Dels=0.00;FS=2.953;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=-1.629;QD=21.93;ReadPosRankSum=2.368;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2007,216,0 chrIV 1079056 . G A 1719 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.48;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1752,201,0 chrIV 1079189 . G A 2286 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=21.17;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2319,255,0 chrIV 1079210 . G A 2321 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=20.36;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2354,255,0 chrIV 1079273 . C T 3639.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=22.33;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3639,399,0 chrIV 1079792 . T C 4513.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.1544;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.49;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4513,525,0 chrIV 1079855 . A G 4504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=211;Dels=0.00;FS=6.053;HaplotypeScore=18.1388;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.734;QD=21.35;ReadPosRankSum=2.889;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:3,205:211:99:4504,510,0 chrIV 1080516 . G A 3177 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.5036;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.69;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3210,345,0 chrIV 1080577 . G A 2988 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.3181;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.47;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3021,327,0 chrIV 1081043 . G C 1639 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=15.61;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:1672,195,0 chrIV 1081111 . C G 4452.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.19;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,188:192:99:4452,530,0 chrIV 1081972 . C T 3819.01 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=22.08;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3819,411,0 chrIV 1081973 . C T 3734.01 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=21.58;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3734,405,0 chrIV 1081977 . G A 3542.01 SnpCluster AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=19.79;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3542,408,0 chrIV 1082074 . G A 4478.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.73;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4478,501,0 chrIV 1082202 . C T 4920.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=3.5662;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=20.76;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4920,534,0 chrIV 1082206 . G A 4730.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=19.63;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:4730,510,0 chrIV 1082232 . T C 4826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=258;Dels=0.00;FS=2.699;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=0.927;QD=18.71;ReadPosRankSum=2.411;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:2,256:258:99:4826,540,0 chrIV 1082379 . A G 4977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=237;Dels=0.00;FS=5.765;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.750;QD=21.00;ReadPosRankSum=2.953;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:3,234:237:99:4977,573,0 chrIV 1082404 . A G 4881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=244;Dels=0.00;FS=5.346;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.696;QD=20.00;ReadPosRankSum=2.896;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:3,238:244:99:4881,558,0 chrIV 1082474 . T G 4751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=250;Dels=0.00;FS=11.450;HaplotypeScore=15.3129;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.547;QD=19.00;ReadPosRankSum=2.430;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:2,247:250:99:4751,540,0 chrIV 1082583 . T C 3543.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.1370;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.09;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3543,402,0 chrIV 1082736 . C T 3569.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.63;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3569,390,0 chrIV 1082751 . C T 2815 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=18.89;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2848,315,0 chrIV 1082766 . T C 2273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-1.130;QD=16.47;ReadPosRankSum=1.607;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2306,270,0 chrIV 1083088 . A G 2671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.236;QD=20.23;ReadPosRankSum=1.627;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2704,309,0 chrIV 1083112 . A G 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.223;QD=22.02;ReadPosRankSum=1.698;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2323,261,0 chrIV 1083252 . A G 3980.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.87;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3980,462,0 chrIV 1083490 . G A 4943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=221;Dels=0.00;FS=3.171;HaplotypeScore=12.6097;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.433;QD=22.37;ReadPosRankSum=1.653;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:4943,534,0 chrIV 1083563 . C A 4882.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.1108;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=24.05;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4882,534,0 chrIV 1083594 . G T 4037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.705;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.5642;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=-1.262;QD=20.08;ReadPosRankSum=1.436;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4037,456,0 chrIV 1083596 . A G 4052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=198;Dels=0.00;FS=2.982;HaplotypeScore=9.4370;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=0.497;QD=20.46;ReadPosRankSum=2.399;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:2,193:198:99:4052,456,0 chrIV 1083624 . G A 4180.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.5809;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.90;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4180,468,0 chrIV 1083804 . C T 3913.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.3196;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.62;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3913,429,0 chrIV 1083977 . A G 3189 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.62;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3222,369,0 chrIV 1084057 . G T 4021.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.65;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4021,432,0 chrIV 1084110 . T C 4137.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.1380;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.86;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4137,471,0 chrIV 1084496 . C T 2181 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.6875;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.33;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2214,246,0 chrIV 1084537 . T A 260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.563;DP=126;Dels=0.05;FS=6.012;HaplotypeScore=33.8054;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=0.205;QD=2.06;ReadPosRankSum=2.599;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:33:293,33,0 chrIV 1084538 . T A 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.971;DP=121;Dels=0.04;FS=41.143;HaplotypeScore=33.8054;MLEAC=1;MLEAF=0.500;MQ=55.40;MQ0=0;MQRankSum=0.079;QD=0.11;ReadPosRankSum=-3.724;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,20:116:43:43,0,303 chrIV 1084849 . G T 2906 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.53;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2939,324,0 chrIV 1084864 . G C 2942 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.12;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2975,339,0 chrIV 1085100 . T G 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.940;QD=23.94;ReadPosRankSum=1.673;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4189,492,0 chrIV 1085196 . T C 3671.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.8661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3671,423,0 chrIV 1085268 . G A 4507.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.3580;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.88;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4507,489,0 chrIV 1085571 . C G 3159 SnpCluster AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.5735;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=18.16;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3192,369,0 chrIV 1085574 . T C 3081 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=179;Dels=0.01;FS=6.829;HaplotypeScore=6.9291;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;MQRankSum=-1.200;QD=17.21;ReadPosRankSum=2.422;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:2,173:177:99:3114,360,0 chrIV 1085577 . A G 3021 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=178;Dels=0.00;FS=3.289;HaplotypeScore=8.3100;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=0.499;QD=16.97;ReadPosRankSum=1.302;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3054,354,0 chrIV 1085721 . T C 2422 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.70;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2455,285,0 chrIV 1086024 . G A 4332.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.75;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4332,471,0 chrIV 1086102 . C T 4460.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.5583;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.60;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4460,480,0 chrIV 1086246 . A T 5024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=220;Dels=0.00;FS=6.666;HaplotypeScore=13.5865;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.148;QD=22.84;ReadPosRankSum=2.393;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:5024,567,0 chrIV 1086315 . T C 4906.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=17.3944;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.71;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,223:226:99:4906,576,0 chrIV 1086618 . T C 4005.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=18.3404;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.97;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4005,465,0 chrIV 1086747 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=171;Dels=0.00;FS=2.982;HaplotypeScore=5.7219;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=0.754;QD=19.84;ReadPosRankSum=2.363;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3392,384,0 chrIV 1086753 . C T 3304.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=19.21;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3304,351,0 chrIV 1086771 . G A 3001 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=17.97;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3034,333,0 chrIV 1087203 . A G 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=2.677;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;MQRankSum=-0.172;QD=20.24;ReadPosRankSum=2.395;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2786,318,0 chrIV 1087218 . T C 2645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=4.871;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;MQRankSum=1.155;QD=20.04;ReadPosRankSum=1.680;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2678,303,0 chrIV 1087263 . T C 2317 SnpCluster AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.9705;MLEAC=2;MLEAF=1.00;MQ=38.41;MQ0=0;QD=14.39;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2350,267,0 chrIV 1087264 . G A 2458 SnpCluster AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=38.41;MQ0=0;QD=15.27;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2491,270,0 chrIV 1087267 . G A 2434 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=37.58;MQ0=0;QD=14.40;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:2467,267,0 chrIV 1087307 . T C 1845 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=35.11;MQ0=0;QD=12.47;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1878,225,0 chrIV 1087338 . G A 2323 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=15.80;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2356,267,0 chrIV 1087358 . A T 2294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=1.267;QD=17.12;ReadPosRankSum=1.706;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2327,264,0 chrIV 1087373 . A G 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=135;Dels=0.00;FS=7.317;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=-1.973;QD=15.92;ReadPosRankSum=2.413;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2182,249,0 chrIV 1087706 . A C 4005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.6307;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.387;QD=21.30;ReadPosRankSum=1.677;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4005,453,0 chrIV 1087872 . A G 3750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.5331;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.081;QD=21.80;ReadPosRankSum=1.652;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3750,429,0 chrIV 1087952 . G A 2044 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=20.44;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2077,234,0 chrIV 1087970 . A G 1915 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=20.16;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1948,219,0 chrIV 1088026 . C T 2780 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.55;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2813,312,0 chrIV 1088057 . A G 2998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.1171;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.100;QD=21.57;ReadPosRankSum=1.707;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3031,345,0 chrIV 1088686 . A G 5015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=225;Dels=0.00;FS=3.108;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.023;QD=22.29;ReadPosRankSum=1.670;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5015,573,0 chrIV 1088723 . A G 5461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=237;Dels=0.00;FS=3.026;HaplotypeScore=14.5525;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.472;QD=23.04;ReadPosRankSum=2.377;SB=-2.905e+03 GT:AD:DP:GQ:PL 1/1:2,234:237:99:5461,615,0 chrIV 1088912 . G A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3457,387,0 chrIV 1089243 . A G 2749 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.77;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2782,309,0 chrIV 1089304 . C T 2359 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.59;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2392,267,0 chrIV 1089625 . T C 4782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=216;Dels=0.00;FS=5.536;HaplotypeScore=12.5819;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.136;QD=22.14;ReadPosRankSum=2.949;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:3,212:216:99:4782,552,0 chrIV 1089672 . G A 4808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=215;Dels=0.00;FS=3.155;HaplotypeScore=8.8967;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.594;QD=22.36;ReadPosRankSum=-1.521;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4808,513,0 chrIV 1089747 . A G 3814.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.62;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3814,438,0 chrIV 1089889 . G A 3446.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.4549;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=21.95;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3446,375,0 chrIV 1090041 . C T 2900 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.0996;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.97;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2933,318,0 chrIV 1090085 . T C 1863 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=18.26;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1896,216,0 chrIV 1090107 . C G 1824 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=78.1529;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=0;QD=15.72;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,112:116:99:1857,213,0 chrIV 1090123 . A G 168.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.005;DP=123;Dels=0.00;FS=5.160;HaplotypeScore=8.1651;MLEAC=1;MLEAF=0.500;MQ=31.38;MQ0=0;MQRankSum=0.341;QD=1.37;ReadPosRankSum=-3.932;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,17:123:99:198,0,164 chrIV 1090126 . A G 204.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;DP=128;Dels=0.00;FS=9.095;HaplotypeScore=10.1252;MLEAC=1;MLEAF=0.500;MQ=31.29;MQ0=0;MQRankSum=-1.525;QD=1.59;ReadPosRankSum=4.733;SB=-1.068e+03 GT:AD:DP:GQ:PL 0/1:18,110:128:99:234,0,129 chrIV 1090128 . A C 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.830;DP=128;Dels=0.00;FS=5.097;HaplotypeScore=7.2256;MLEAC=1;MLEAF=0.500;MQ=31.29;MQ0=0;MQRankSum=-1.053;QD=0.34;ReadPosRankSum=-3.672;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:119,9:128:74:74,0,329 chrIV 1090133 . G A 347.09 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.133;DP=133;Dels=0.01;FS=13.841;HaplotypeScore=6.4369;MLEAC=1;MLEAF=0.500;MQ=31.86;MQ0=0;MQRankSum=-0.985;QD=2.61;ReadPosRankSum=4.174;SB=-1.374e+03 GT:AD:DP:GQ:PL 0/1:7,125:132:14:377,0,14 chrIV 1090145 . A G 2026 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=37.61;MQ0=0;QD=13.42;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,146:151:99:2059,234,0 chrIV 1090151 . T C 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=165;Dels=0.00;FS=3.483;HaplotypeScore=6.5707;MLEAC=2;MLEAF=1.00;MQ=39.79;MQ0=0;MQRankSum=1.417;QD=13.19;ReadPosRankSum=1.648;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2210,261,0 chrIV 1090184 . T C 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=3.404;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;MQRankSum=-0.491;QD=16.36;ReadPosRankSum=1.652;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:2863,324,0 chrIV 1090269 . C T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.5298;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.36;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3610,396,0 chrIV 1090306 . A G 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=171;Dels=0.00;FS=13.416;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-0.696;QD=21.12;ReadPosRankSum=2.947;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:3,166:171:99:3612,411,0 chrIV 1090358 . T C 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=-1.384;QD=20.71;ReadPosRankSum=1.712;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3500,399,0 chrIV 1090407 . T C 2632 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.1514;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=16.76;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2665,303,0 chrIV 1090410 . A G 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=5.1514;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=1.203;QD=16.21;ReadPosRankSum=1.710;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:2627,300,0 chrIV 1090457 . A T 2944 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=16.82;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2977,327,0 chrIV 1090578 . G A 3351.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.0537;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.49;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3351,375,0 chrIV 1090692 . T C 2526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=125;Dels=0.00;FS=3.726;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=1.483;QD=20.21;ReadPosRankSum=1.649;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2559,294,0 chrIV 1090877 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.2159;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=24.08;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3828,435,0 chrIV 1091087 . T C 3729.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.43;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3729,435,0 chrIV 1091102 . A G 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.856;QD=21.38;ReadPosRankSum=1.711;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3591,411,0 chrIV 1091480 . C T 5331.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.4764;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.23;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5331,591,0 chrIV 1091512 . C T 5313.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.30;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5313,588,0 chrIV 1091591 . A G 3805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.589;DP=182;Dels=0.00;FS=3.955;HaplotypeScore=15.1880;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.644;QD=20.91;ReadPosRankSum=2.496;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:5,177:182:99:3805,441,0 chrIV 1092275 . C A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3510,384,0 chrIV 1093040 . C T 3435.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.07;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3435,384,0 chrIV 1093101 . G T 3348.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3348,366,0 chrIV 1093159 . G T 2656 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.30;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2689,294,0 chrIV 1093491 . T C 3113 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.8490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3146,366,0 chrIV 1093742 . G T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.8782;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.53;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3559,396,0 chrIV 1093818 . C T 2901 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.81;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2934,330,0 chrIV 1093912 . A G 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.076;QD=21.73;ReadPosRankSum=1.710;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:3520,399,0 chrIV 1094185 . A G 4098.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.42;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4098,468,0 chrIV 1095022 . A G 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.329;QD=22.17;ReadPosRankSum=1.685;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:2,145:150:99:3326,378,0 chrIV 1095112 . C T 3204 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=22.56;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3237,360,0 chrIV 1095230 . T G 2049 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=22.27;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,89:92:99:2082,240,0 chrIV 1095303 . A G 1195 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.10;MQ0=0;QD=13.90;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1228,138,0 chrIV 1095346 . T G 1799 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=15.78;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1832,210,0 chrIV 1095353 . C T 1809 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=15.73;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1842,201,0 chrIV 1095467 . T C 1823 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=17.53;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1856,213,0 chrIV 1095472 . C T 1790 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=18.65;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1823,198,0 chrIV 1095515 . A G 1174 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;QD=15.65;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1207,138,0 chrIV 1095542 . T G 1477 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.10;MQ0=0;QD=20.23;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1510,171,0 chrIV 1095572 . G A 1702 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=66.5112;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=21.82;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1735,186,0 chrIV 1095674 . C T 2756 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=0;QD=22.23;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2789,315,0 chrIV 1096010 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.73;MQ0=13;MQRankSum=0.727;QD=1.17;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:14,3:17:6:51,6,0 chrIV 1101698 . C G 123.13 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.04;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=33.98;MQ0=0;QD=2.51;SB=-7.614e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:18:156,18,0 chrIV 1101779 . T G 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.139;HaplotypeScore=4.7378;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;MQRankSum=-0.151;QD=22.83;ReadPosRankSum=1.698;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2385,273,0 chrIV 1101804 . C T 2376 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=22.42;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2409,267,0 chrIV 1101915 . G A 1881 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;QD=19.39;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1914,207,0 chrIV 1101927 . C T 1769 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.03;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=19.23;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1802,195,0 chrIV 1101950 . A T 1660 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=17.66;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1693,186,0 chrIV 1102052 . A T 1925 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=22.13;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1958,222,0 chrIV 1102082 . T C 1536 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=19.69;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1569,183,0 chrIV 1102096 . C T 1435 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=20.21;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1468,165,0 chrIV 1102102 . A G 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;MQRankSum=-1.185;QD=17.70;ReadPosRankSum=1.687;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1396,159,0 chrIV 1102257 . T C 1900 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.17;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1933,219,0 chrIV 1102285 . A T 1822 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.95;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1855,204,0 chrIV 1102315 . C T 2372 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.4415;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=24.71;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2405,264,0 chrIV 1102347 . A T 2588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0031;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.935;QD=20.70;ReadPosRankSum=2.292;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2621,285,0 chrIV 1102348 . T C 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.2144;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=0.726;QD=19.50;ReadPosRankSum=1.620;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2451,285,0 chrIV 1102674 . G A 3202 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.3814;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.87;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3235,363,0 chrIV 1102795 . T G 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=117;Dels=0.00;FS=2.976;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=0.494;QD=22.89;ReadPosRankSum=2.324;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2711,309,0 chrIV 1103138 . G A 2252 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.98;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2285,249,0 chrIV 1103217 . G T 3225.28 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.9341;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=24.62;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3258,351,0 chrIV 1103455 . G A 3429.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=22.71;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3429,384,0 chrIV 1103480 . C T 2945 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=20.03;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2978,327,0 chrIV 1103488 . T A 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=141;Dels=0.00;FS=3.040;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-1.406;QD=16.98;ReadPosRankSum=2.361;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:2427,264,0 chrIV 1103531 . A G 2064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=117;Dels=0.00;FS=8.285;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.011;QD=17.64;ReadPosRankSum=2.365;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2097,237,0 chrIV 1103859 . T A 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=3.445;HaplotypeScore=6.5954;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.320;QD=21.60;ReadPosRankSum=1.650;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2755,309,0 chrIV 1104014 . G A 2808 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.80;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2841,309,0 chrIV 1104188 . G A 3221.02 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.01;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3254,357,0 chrIV 1104401 . G A 3147 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3180,345,0 chrIV 1104470 . C T 3412.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.72;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3412,375,0 chrIV 1104723 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.9642;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.36;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3511,396,0 chrIV 1104929 . C T 2685 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.65;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2718,300,0 chrIV 1104966 . T G 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.538;QD=20.29;ReadPosRankSum=1.704;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2590,306,0 chrIV 1105249 . A T 2935 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2968,333,0 chrIV 1105660 . T C 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=168;Dels=0.00;FS=6.479;HaplotypeScore=6.5111;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.718;QD=23.26;ReadPosRankSum=1.754;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3908,450,0 chrIV 1105780 . G A 2410 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2443,261,0 chrIV 1105992 . T C 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.094;DP=98;Dels=0.00;FS=6.921;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.739;QD=20.86;ReadPosRankSum=2.399;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:2,95:98:99:2077,231,0 chrIV 1106241 . T C 3874.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.8209;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.36;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3874,438,0 chrIV 1106326 . C T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8904;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3599,408,0 chrIV 1106617 . C G 2681 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2714,312,0 chrIV 1106812 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.45;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2991,321,0 chrIV 1106884 . T C 3129 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.51;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3162,360,0 chrIV 1106978 . T A 4173.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.29;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4173,444,0 chrIV 1107114 . T C 2657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.01;FS=4.048;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-0.041;QD=20.60;ReadPosRankSum=1.705;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2690,303,0 chrIV 1107118 . G A 2719 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=21.08;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2752,300,0 chrIV 1107187 . A G 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.426;QD=19.76;ReadPosRankSum=2.412;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2602,306,0 chrIV 1107223 . G A 3006 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.30;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3039,336,0 chrIV 1107429 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.85;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2699,294,0 chrIV 1107444 . C T 2739 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.40;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2772,309,0 chrIV 1107470 . C T 2687 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.67;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2720,300,0 chrIV 1107893 . G A 4545.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=21.14;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4545,495,0 chrIV 1107914 . G A 4872.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=7.8805;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.91;SB=-2.795e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4872,543,0 chrIV 1108114 . T C 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.258;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=15.2834;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.779;QD=22.59;ReadPosRankSum=2.420;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:2,163:167:99:3772,426,0 chrIV 1108456 . G T 3535.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.03;FS=0.000;HaplotypeScore=21.6125;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=23.72;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3535,381,0 chrIV 1108484 . A G 2979 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.43;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3012,357,0 chrIV 1108508 . T C 2789 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=138.0566;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=18.23;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2822,318,0 chrIV 1108662 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.83;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3296,357,0 chrIV 1108696 . C G 3735.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.97;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3735,426,0 chrIV 1109358 . T C 3561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=159;Dels=0.00;FS=3.353;HaplotypeScore=11.4212;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-1.294;QD=22.40;ReadPosRankSum=1.666;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3561,408,0 chrIV 1109554 . G A 4100.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=23.03;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4100,444,0 chrIV 1109568 . T C 3803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=190;Dels=0.00;FS=2.574;HaplotypeScore=14.9599;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=1.222;QD=20.02;ReadPosRankSum=2.897;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:3,183:190:99:3803,435,0 chrIV 1109736 . A C 3942.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.5978;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.15;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3942,447,0 chrIV 1109890 . T G 2224 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.59;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2257,255,0 chrIV 1109982 . C T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=0.33;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,57:57:6:50,6,0 chrIV 1110105 . T C 394 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=16.42;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:48:427,48,0 chrIV 1110458 . C A 2568 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.69;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2601,303,0 chrIV 1110571 . C A 1944 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.68;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1977,222,0 chrIV 1110708 . A G 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=14.1707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.763;QD=20.82;ReadPosRankSum=1.703;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2490,282,0 chrIV 1111002 . G A 4205.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.2828;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.62;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4205,480,0 chrIV 1111210 . A G 3476.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.5975;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.20;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3476,408,0 chrIV 1111414 . T A 3625.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.69;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3625,405,0 chrIV 1111575 . C T 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.562;DP=150;Dels=0.00;FS=3.573;HaplotypeScore=14.5422;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.772;QD=20.63;ReadPosRankSum=1.124;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3128,331,0 chrIV 1111626 . A C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-1.594;QD=18.95;ReadPosRankSum=1.640;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2875,333,0 chrIV 1111638 . C T 2654 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=18.30;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2687,306,0 chrIV 1111780 . G A 2457 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.00;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2490,273,0 chrIV 1112609 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.13;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3268,351,0 chrIV 1113053 . T C 2577 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.03;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2610,297,0 chrIV 1113116 . C T 3496.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.8046;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.45;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3496,384,0 chrIV 1113224 . C T 4667.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.3141;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=23.81;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4667,513,0 chrIV 1113284 . T G 4764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=214;Dels=0.00;FS=2.950;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.481;QD=22.26;ReadPosRankSum=2.392;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:2,211:214:99:4764,549,0 chrIV 1113753 . A G 4031.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.67;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4031,456,0 chrIV 1113766 . T C 4021.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.83;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4021,462,0 chrIV 1113867 . C T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.72;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,163:167:99:3794,411,0 chrIV 1114225 . C T 3036 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.53;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3069,342,0 chrIV 1114429 . T A 12.99 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=127;Dels=0.03;FS=3.926;HaplotypeScore=116.8112;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.558;QD=0.10;ReadPosRankSum=1.646;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:6:44,6,0 chrIV 1114993 . T C 2530 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.1805;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2563,291,0 chrIV 1115198 . A G 2311 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.22;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2344,264,0 chrIV 1115399 . G T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.84;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3457,387,0 chrIV 1115900 . G A 2789 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2822,315,0 chrIV 1116164 . G A 4063.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.3412;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.20;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4063,453,0 chrIV 1116305 . T C 4798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=233;Dels=0.00;FS=3.321;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.941;QD=20.59;ReadPosRankSum=1.687;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:4798,549,0 chrIV 1116482 . G A 3647.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.3565;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.33;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:3647,408,0 chrIV 1116554 . A G 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=171;Dels=0.00;FS=5.454;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.135;QD=20.58;ReadPosRankSum=2.959;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:3520,405,0 chrIV 1116571 . A G 3385.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.7591;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.90;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3385,381,0 chrIV 1116662 . A G 3028 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.9998;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.78;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3061,351,0 chrIV 1116862 . T C 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.7600;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.364;QD=22.24;ReadPosRankSum=1.708;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3169,363,0 chrIV 1117090 . T C 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=171;Dels=0.00;FS=3.024;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.952;QD=20.89;ReadPosRankSum=2.421;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:2,167:171:99:3573,408,0 chrIV 1117115 . C T 3674.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.6159;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.74;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3674,399,0 chrIV 1117138 . G C 3476.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=20.21;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3476,396,0 chrIV 1117839 . G A 4347.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.3194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4347,477,0 chrIV 1118402 . C T 2529 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.62;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2562,282,0 chrIV 1118418 . G A 2611 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.13;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2644,285,0 chrIV 1118493 . C T 3016 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3049,330,0 chrIV 1118730 . C T 5143.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.0234;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.59;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5143,570,0 chrIV 1118976 . T C 6428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=282;Dels=0.00;FS=3.023;HaplotypeScore=16.6837;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.642;QD=22.79;ReadPosRankSum=2.406;SB=-3.482e+03 GT:AD:DP:GQ:PL 1/1:2,279:282:99:6428,732,0 chrIV 1119216 . C T 4410.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=17.6208;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.84;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4410,483,0 chrIV 1119306 . G C 3943.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=15.4777;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.43;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3943,456,0 chrIV 1119862 . A G 3288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=3.228;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.133;QD=22.52;ReadPosRankSum=1.684;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,142:146:99:3288,372,0 chrIV 1120026 . C T 3854.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3854,429,0 chrIV 1120228 . T C 3083 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3116,366,0 chrIV 1120348 . G A 1898 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=21.82;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1931,216,0 chrIV 1120363 . A T 1729 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=22.75;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1762,192,0 chrIV 1120615 . T C 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;MQRankSum=1.333;QD=22.32;ReadPosRankSum=2.348;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2198,255,0 chrIV 1120689 . T C 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-0.891;QD=23.22;ReadPosRankSum=1.631;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2425,276,0 chrIV 1120888 . G A 2724 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.2567;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.15;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2757,303,0 chrIV 1120915 . A G 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-1.703;QD=21.56;ReadPosRankSum=1.703;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2555,282,0 chrIV 1121173 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.63;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2952,321,0 chrIV 1121716 . T C 2643 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.31;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2676,312,0 chrIV 1121737 . G A 2628 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.69;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2661,291,0 chrIV 1121842 . G A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.33;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3523,393,0 chrIV 1122232 . G A 3179 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3212,345,0 chrIV 1122421 . A T 3805.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.24;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3805,411,0 chrIV 1122537 . C T 3759.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.8421;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.11;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3759,411,0 chrIV 1122844 . G A 2980 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.91;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3013,339,0 chrIV 1122913 . T C 3190 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2886;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.99;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3223,375,0 chrIV 1122952 . A G 2985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.940;QD=21.32;ReadPosRankSum=1.707;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3018,342,0 chrIV 1123442 . G C 3288.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.77;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3288,378,0 chrIV 1123586 . A T 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=191;Dels=0.00;FS=10.653;HaplotypeScore=11.8480;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=0.463;QD=20.35;ReadPosRankSum=2.899;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:3887,426,0 chrIV 1123606 . T A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.6128;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.00;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3822,426,0 chrIV 1123907 . C G 5377.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=18.3167;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.69;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,233:237:99:5377,624,0 chrIV 1123978 . G A 6175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=11.9791;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.626;QD=23.66;ReadPosRankSum=1.466;SB=-3.248e+03 GT:AD:DP:GQ:PL 1/1:1,259:261:99:6175,681,0 chrIV 1124047 . T C 4260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=198;Dels=0.00;FS=7.389;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.244;QD=21.52;ReadPosRankSum=2.387;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:2,194:198:99:4260,486,0 chrIV 1124083 . G A 4475.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.21;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4475,486,0 chrIV 1124100 . G A 4184.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.8692;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.51;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4184,477,0 chrIV 1124146 . T C 4508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=230;Dels=0.00;FS=4.695;HaplotypeScore=16.9090;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.396;QD=19.60;ReadPosRankSum=1.686;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,226:230:99:4508,513,0 chrIV 1124419 . A G 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.013;QD=21.41;ReadPosRankSum=1.652;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2795,321,0 chrIV 1124465 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=15.9084;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.39;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3263,366,0 chrIV 1125071 . A G 2238 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.84;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2271,261,0 chrIV 1125098 . A T 1810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=3.578;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=0.495;QD=18.10;ReadPosRankSum=1.697;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1843,207,0 chrIV 1125103 . G A 1796 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=17.27;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1829,207,0 chrIV 1125139 . T C 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=113;Dels=0.00;FS=2.937;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-0.648;QD=16.34;ReadPosRankSum=2.384;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:2,110:113:99:1879,213,0 chrIV 1125674 . G A 6661.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-3.393e+03 GT:AD:DP:GQ:PL 1/1:0,299:300:99:6661,744,0 chrIV 1125758 . C T 5498.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=14.7160;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.36;SB=-3.165e+03 GT:AD:DP:GQ:PL 1/1:0,266:269:99:5498,621,0 chrIV 1125821 . G A 6226.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=17.6733;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=19.96;SB=-3.500e+03 GT:AD:DP:GQ:PL 1/1:0,309:312:99:6226,684,0 chrIV 1126043 . C T 4292.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=16.0613;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.34;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4292,462,0 chrIV 1126090 . G C 3312.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=18.10;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,178:183:99:3312,387,0 chrIV 1126095 . T C 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=180;Dels=0.00;FS=7.707;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=0.048;QD=19.38;ReadPosRankSum=2.422;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3488,396,0 chrIV 1126171 . T C 3417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=177;Dels=0.00;FS=6.095;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-0.548;QD=19.31;ReadPosRankSum=2.422;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3417,399,0 chrIV 1126206 . C T 3936.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=15.1878;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.05;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3936,429,0 chrIV 1126266 . G A 3428.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.1121;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.29;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3428,375,0 chrIV 1126318 . G A 3741.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=22.40;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3741,414,0 chrIV 1126330 . A G 3303.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=19.54;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3303,375,0 chrIV 1126356 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.19;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3339,366,0 chrIV 1126399 . G T 3050 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=15.1204;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=18.83;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3083,342,0 chrIV 1126486 . A C 4417.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.65;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4417,510,0 chrIV 1126843 . A G 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=4.191;HaplotypeScore=12.3976;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.766;QD=21.44;ReadPosRankSum=1.685;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3184,375,0 chrIV 1126921 . A G 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=156;Dels=0.00;FS=3.736;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.378;QD=22.83;ReadPosRankSum=1.710;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3562,405,0 chrIV 1126974 . C T 4593.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.20;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4593,501,0 chrIV 1127082 . A G 4906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=217;Dels=0.00;FS=3.613;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.273;QD=22.61;ReadPosRankSum=1.700;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:4906,555,0 chrIV 1127449 . C T 3607.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=16.6400;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.15;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3607,402,0 chrIV 1127544 . C G 4986.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=17.9293;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.43;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:0,239:244:99:4986,573,0 chrIV 1127809 . G A 7353.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=13.0995;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.80;SB=-3.462e+03 GT:AD:DP:GQ:PL 1/1:0,308:309:99:7353,813,0 chrIV 1128039 . G A 5620.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=17.5726;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.74;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:5620,618,0 chrIV 1128060 . G A 5446.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.79;SB=-3.307e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:5446,612,0 chrIV 1128108 . G A 5271.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=16.9610;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.52;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:0,266:270:99:5271,588,0 chrIV 1128459 . G C 3687.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3687,417,0 chrIV 1128666 . T C 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=185;Dels=0.00;FS=3.034;HaplotypeScore=15.0337;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.607;QD=21.42;ReadPosRankSum=2.410;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:3963,453,0 chrIV 1128763 . T C 5625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.069;QD=23.73;ReadPosRankSum=1.703;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:1,234:237:99:5625,630,0 chrIV 1128819 . T C 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=185;Dels=0.00;FS=4.088;HaplotypeScore=15.9569;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-1.123;QD=19.56;ReadPosRankSum=1.656;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,181:185:99:3618,414,0 chrIV 1128837 . A G 3031 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.83;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3064,360,0 chrIV 1129197 . T A 4038.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.2498;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.95;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4038,441,0 chrIV 1129980 . A G 3480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.3706;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.592;QD=21.61;ReadPosRankSum=1.646;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3480,393,0 chrIV 1130157 . T C 3604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=170;Dels=0.00;FS=3.724;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.241;QD=21.20;ReadPosRankSum=1.648;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,164:170:99:3604,426,0 chrIV 1130680 . G A 1990 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.63;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2023,219,0 chrIV 1130895 . A T 98.79 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;DP=41;Dels=0.02;FS=4.492;HaplotypeScore=11.7292;MLEAC=1;MLEAF=0.500;MQ=55.78;MQ0=0;MQRankSum=1.105;QD=2.41;ReadPosRankSum=-1.195;SB=-8.381e+01 GT:AD:DP:GQ:PL 0/1:4,36:40:4:128,0,4 chrIV 1130942 . T G 1711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.053;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.099;QD=19.67;ReadPosRankSum=2.393;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1744,213,0 chrIV 1132333 . A G 4129.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;DP=185;Dels=0.00;FS=5.855;HaplotypeScore=14.6434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.332;QD=22.32;ReadPosRankSum=2.940;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:4129,468,0 chrIV 1132452 . T C 2488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.906;QD=22.62;ReadPosRankSum=1.669;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2521,288,0 chrIV 1132828 . C A 3201 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.07;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3234,348,0 chrIV 1132875 . A G 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.933;QD=23.45;ReadPosRankSum=1.652;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3105,348,0 chrIV 1132989 . C T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.67;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3764,420,0 chrIV 1133095 . T C 4037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=174;Dels=0.00;FS=2.723;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.348;QD=23.20;ReadPosRankSum=2.322;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:4037,462,0 chrIV 1133213 . C T 3949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.974;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=15.6343;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.031;QD=22.83;ReadPosRankSum=1.343;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:1,169:173:99:3949,406,0 chrIV 1133503 . A T 3765.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.15;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3765,417,0 chrIV 1133593 . A T 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.068;QD=22.17;ReadPosRankSum=1.635;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4013,447,0 chrIV 1133710 . A T 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.294;DP=182;Dels=0.00;FS=13.102;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.024;QD=20.93;ReadPosRankSum=3.411;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:4,178:182:99:3809,420,0 chrIV 1133759 . G A 3352.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.2495;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=21.08;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3352,366,0 chrIV 1133767 . A G 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=157;Dels=0.00;FS=3.391;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-1.397;QD=18.66;ReadPosRankSum=1.643;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:2963,345,0 chrIV 1133923 . G C 3713.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=21.59;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3713,438,0 chrIV 1133944 . C T 4100.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.16;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4100,447,0 chrIV 1134931 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.09;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2828,303,0 chrIV 1135187 . C G 4068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=4.647;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.363;QD=23.65;ReadPosRankSum=1.511;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4068,462,0 chrIV 1135217 . G A 3801.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.76;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3801,414,0 chrIV 1135243 . C A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.74;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3674,396,0 chrIV 1135287 . T C 3913.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.38;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3913,435,0 chrIV 1135309 . C G 4139.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.01;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4139,483,0 chrIV 1135367 . T C 4265.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.54;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4265,486,0 chrIV 1136116 . G A 4223.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=23.72;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4223,465,0 chrIV 1136153 . A C 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=187;Dels=0.00;FS=4.206;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=-0.676;QD=22.32;ReadPosRankSum=1.714;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4174,477,0 chrIV 1136171 . C G 4026.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=20.65;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4026,471,0 chrIV 1136184 . A T 3758.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.0133;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=19.78;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3758,429,0 chrIV 1136363 . A G 4015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=-0.240;QD=21.36;ReadPosRankSum=1.695;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4015,456,0 chrIV 1136364 . G A 4131.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=21.97;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4131,456,0 chrIV 1136387 . A G 4001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=193;Dels=0.00;FS=5.328;HaplotypeScore=5.8291;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=0.408;QD=20.73;ReadPosRankSum=2.901;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:3,189:193:99:4001,459,0 chrIV 1136466 . C T 2395 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.01;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2428,273,0 chrIV 1136470 . T A 2359 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.34;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2392,261,0 chrIV 1136725 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.18;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3393,363,0 chrIV 1137089 . A G 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=167;Dels=0.00;FS=9.683;HaplotypeScore=8.7160;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.470;QD=23.28;ReadPosRankSum=2.909;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:3,162:167:99:3887,441,0 chrIV 1137328 . T C 5169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=218;Dels=0.00;FS=2.758;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.386;QD=23.71;ReadPosRankSum=2.416;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:2,215:218:99:5169,591,0 chrIV 1137425 . C A 4339.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.1983;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.08;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4339,486,0 chrIV 1137538 . G A 4589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.399;DP=208;Dels=0.00;FS=4.316;HaplotypeScore=16.8875;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.133;QD=22.06;ReadPosRankSum=-0.833;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4589,483,0 chrIV 1137597 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=159;Dels=0.00;FS=6.102;HaplotypeScore=9.7374;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.127;QD=23.28;ReadPosRankSum=2.892;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:3702,417,0 chrIV 1137630 . A G 3664.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.04;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3664,420,0 chrIV 1137761 . G A 4042.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4042,435,0 chrIV 1137863 . A G 3348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=159;Dels=0.00;FS=2.993;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.532;QD=21.06;ReadPosRankSum=2.403;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3348,396,0 chrIV 1138271 . C T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.0845;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.98;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3451,381,0 chrIV 1138398 . C T 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.3717;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-0.144;QD=21.90;ReadPosRankSum=-0.247;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3745,408,0 chrIV 1138406 . A G 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=149;Dels=0.00;FS=6.228;HaplotypeScore=4.6954;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-0.767;QD=20.72;ReadPosRankSum=2.367;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3121,357,0 chrIV 1138886 . T C 3361.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.68;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3361,381,0 chrIV 1138945 . T C 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.270;QD=22.21;ReadPosRankSum=1.687;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3443,390,0 chrIV 1138987 . A C 3081 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.82;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3114,363,0 chrIV 1139004 . C G 3088 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.86;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:3121,354,0 chrIV 1139381 . T A 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=2.845;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.310;QD=22.50;ReadPosRankSum=2.364;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2620,306,0 chrIV 1139520 . T C 4049.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.10;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4049,459,0 chrIV 1139792 . T C 3942.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.19;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3942,453,0 chrIV 1139987 . A G 3501.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.0684;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.75;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3501,399,0 chrIV 1140038 . T C 3628.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.12;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3628,420,0 chrIV 1140095 . A G 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=167;Dels=0.00;FS=7.103;HaplotypeScore=11.9761;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.566;QD=23.26;ReadPosRankSum=2.405;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3884,444,0 chrIV 1140165 . T C 4115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=185;Dels=0.00;FS=2.636;HaplotypeScore=13.6544;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.520;QD=22.24;ReadPosRankSum=2.383;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4115,459,0 chrIV 1140266 . T C 4561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.696;DP=194;Dels=0.00;FS=7.997;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.444;QD=23.51;ReadPosRankSum=3.720;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:5,189:194:99:4561,510,0 chrIV 1141061 . T C 2910 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.09;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2943,336,0 chrIV 1141130 . C T 1723 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.81;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1756,192,0 chrIV 1141245 . G A 2116 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.00;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2149,234,0 chrIV 1141284 . C T 2286 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.57;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2319,246,0 chrIV 1141710 . A G 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=152;Dels=0.00;FS=7.691;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=1.496;QD=22.32;ReadPosRankSum=2.417;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3393,381,0 chrIV 1141725 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=153;Dels=0.00;FS=5.709;HaplotypeScore=7.5175;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.441;QD=21.51;ReadPosRankSum=2.954;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3291,372,0 chrIV 1141788 . T C 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.7074;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.951;QD=21.60;ReadPosRankSum=1.690;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3543,417,0 chrIV 1142034 . T C 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=151;Dels=0.00;FS=8.335;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.138;QD=21.68;ReadPosRankSum=2.350;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:2,146:151:99:3273,366,0 chrIV 1142250 . A G 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=124;Dels=0.00;FS=3.495;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.296;QD=21.79;ReadPosRankSum=1.704;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2735,306,0 chrIV 1142958 . T C 2584 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.07;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2617,297,0 chrIV 1143051 . C T 2124 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2157,240,0 chrIV 1143239 . A G 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=149;Dels=0.00;FS=9.140;HaplotypeScore=9.6509;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.121;QD=23.23;ReadPosRankSum=2.416;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3461,390,0 chrIV 1143561 . G T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.2672;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3920,426,0 chrIV 1143858 . C T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3861,432,0 chrIV 1143894 . A C 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.358;QD=22.52;ReadPosRankSum=1.652;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3964,462,0 chrIV 1144305 . C T 3185 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3218,357,0 chrIV 1144484 . C T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.36;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3622,390,0 chrIV 1145144 . A G 2453 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2486,288,0 chrIV 1145628 . C T 4178.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.60;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4178,453,0 chrIV 1146161 . G T 3897.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.01;FS=0.000;HaplotypeScore=13.1332;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.20;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3897,429,0 chrIV 1146376 . T C 3815.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=22.31;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3815,435,0 chrIV 1146468 . T C 2156 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=19.0345;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=15.62;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2189,255,0 chrIV 1146477 . A G 1995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=139;Dels=0.00;FS=6.532;HaplotypeScore=13.8764;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=0.218;QD=14.35;ReadPosRankSum=1.706;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2028,231,0 chrIV 1146894 . T C 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=4.555;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.055;QD=22.09;ReadPosRankSum=1.666;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3491,396,0 chrIV 1147285 . A T 1735 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.7982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.53;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1768,198,0 chrIV 1147320 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.60;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2468,270,0 chrIV 1147489 . T A 2231 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.24;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2264,246,0 chrIV 1147580 . C T 3681.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.30;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3681,405,0 chrIV 1147805 . T G 4470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=203;Dels=0.00;FS=2.889;HaplotypeScore=6.5257;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.022;QD=22.02;ReadPosRankSum=2.365;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4470,507,0 chrIV 1147847 . C A 5577.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.14;SB=-2.974e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5577,615,0 chrIV 1147937 . G A 4208.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.2285;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.15;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4208,459,0 chrIV 1147951 . T C 3826.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=20.24;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3826,438,0 chrIV 1148075 . C T 4219.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4219,474,0 chrIV 1148435 . G A 3506.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.07;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3506,399,0 chrIV 1148453 . G A 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=4.139;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.231;QD=23.24;ReadPosRankSum=1.649;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3881,420,0 chrIV 1148558 . G A 3116 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.64;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3149,354,0 chrIV 1148573 . G A 3441.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.1234;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.34;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3441,378,0 chrIV 1148663 . C G 4777.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.75;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4777,534,0 chrIV 1148689 . A G 4995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=226;Dels=0.00;FS=3.029;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-0.496;QD=22.10;ReadPosRankSum=2.362;SB=-2.809e+03 GT:AD:DP:GQ:PL 1/1:2,223:226:99:4995,570,0 chrIV 1148726 . C T 4674.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.36;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4674,507,0 chrIV 1148912 . A G 4673.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.7137;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.63;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4673,531,0 chrIV 1149107 . A G 4816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.275;DP=220;Dels=0.00;FS=9.139;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.366;QD=21.89;ReadPosRankSum=3.404;SB=-2.728e+03 GT:AD:DP:GQ:PL 1/1:4,213:220:99:4816,540,0 chrIV 1149128 . C T 4404.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.7102;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.13;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4404,486,0 chrIV 1149368 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.1145;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.30;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3308,360,0 chrIV 1149478 . T C 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=124;Dels=0.00;FS=9.473;HaplotypeScore=8.3790;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.327;QD=20.24;ReadPosRankSum=2.410;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2543,285,0 chrIV 1149488 . C T 2478 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.02;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.67;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2511,282,0 chrIV 1149565 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.97;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3011,339,0 chrIV 1149618 . A G 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=150;Dels=0.03;FS=4.893;HaplotypeScore=19.5051;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.466;QD=21.95;ReadPosRankSum=1.708;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3293,369,0 chrIV 1149761 . G A 3071 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=20.61;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3104,348,0 chrIV 1149762 . C T 3074 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=20.36;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3107,348,0 chrIV 1149773 . C G 2842 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=19.07;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2875,333,0 chrIV 1149861 . G A 3165 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.62;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3198,360,0 chrIV 1149933 . G T 3131 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.37;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3164,354,0 chrIV 1150131 . A G 2784 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.8519;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.89;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2817,318,0 chrIV 1150196 . A G 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.063;QD=17.95;ReadPosRankSum=1.690;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:2976,336,0 chrIV 1150248 . G A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.90;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3755,411,0 chrIV 1150352 . G C 3286.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.31;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:3286,372,0 chrIV 1150413 . T A 2998 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=23.98;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3031,336,0 chrIV 1150452 . T C 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.405;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.1246;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-1.296;QD=22.29;ReadPosRankSum=1.705;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2886,306,0 chrIV 1150476 . T C 2669 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=21.35;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2702,300,0 chrIV 1150562 . C A 3628.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.9648;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=24.03;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3628,393,0 chrIV 1150605 . A G 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=132;Dels=0.00;FS=6.188;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.512;QD=21.30;ReadPosRankSum=2.412;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2845,333,0 chrIV 1150620 . C T 2733 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=21.69;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2766,309,0 chrIV 1150675 . T C 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=126;Dels=0.00;FS=3.038;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;MQRankSum=1.879;QD=21.83;ReadPosRankSum=2.095;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2784,309,0 chrIV 1150691 . A G 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=3.222;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;MQRankSum=0.880;QD=22.22;ReadPosRankSum=1.705;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2833,333,0 chrIV 1150716 . G A 2558 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=115.3751;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=18.95;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2591,288,0 chrIV 1150776 . A G 2709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=0.731;QD=20.07;ReadPosRankSum=1.706;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2742,321,0 chrIV 1150827 . A G 2240 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.18;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2273,264,0 chrIV 1150828 . G A 2335 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=21.04;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2368,264,0 chrIV 1150963 . T C 1911 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;QD=21.00;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1944,222,0 chrIV 1150964 . G A 2013 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;QD=22.87;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2046,222,0 chrIV 1151056 . A G 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.423;DP=105;Dels=0.00;FS=40.345;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;MQRankSum=1.988;QD=19.11;ReadPosRankSum=3.536;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:17,88:105:99:2040,240,0 chrIV 1151094 . C T 1146 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=32.36;MQ0=0;QD=15.70;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1179,129,0 chrIV 1151115 . T G 230 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=12.3924;MLEAC=2;MLEAF=1.00;MQ=26.90;MQ0=0;QD=7.67;SB=-4.302e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:30:263,30,0 chrIV 1151152 . G A 504 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=0;QD=13.62;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:60:537,60,0 chrIV 1151234 . G A 1661 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.17;MQ0=1;QD=22.15;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1694,189,0 chrIV 1151283 . T C 1517 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.11;MQ0=0;QD=22.31;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1550,177,0 chrIV 1151301 . T C 1061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DP=45;Dels=0.00;FS=4.228;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.65;MQ0=0;MQRankSum=1.655;QD=23.58;ReadPosRankSum=-0.731;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:1094,126,0 chrIV 1151324 . G A 625 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;QD=25.00;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:69:658,69,0 chrIV 1151362 . A T 127.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=21.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:160,18,0 chrIV 1151370 . T A 113.26 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=18.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:15:146,15,0 chrIV 1151661 . A T 685 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.03;FS=0.000;HaplotypeScore=2.9162;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=10.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:78:718,78,0 chrIV 1151700 . C G 1187 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=16.26;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1220,147,0 chrIV 1151759 . T C 2221 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=21.77;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2254,255,0 chrIV 1151799 . T C 2877 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=9.3099;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=22.65;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2910,333,0 chrIV 1151893 . T G 3192 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=22.32;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3225,372,0 chrIV 1152100 . T G 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.766;QD=19.59;ReadPosRankSum=1.711;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3271,378,0 chrIV 1152109 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=19.26;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3115,357,0 chrIV 1152190 . A G 3876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=165;Dels=0.00;FS=3.340;HaplotypeScore=11.3281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.415;QD=23.49;ReadPosRankSum=1.690;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3876,435,0 chrIV 1152478 . G A 4233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=199;Dels=0.00;FS=3.148;HaplotypeScore=15.5848;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.812;QD=21.27;ReadPosRankSum=-1.443;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:1,195:199:99:4233,447,0 chrIV 1152643 . T C 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.993;DP=153;Dels=0.00;FS=2.546;HaplotypeScore=8.2574;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.623;QD=20.59;ReadPosRankSum=2.610;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:3184,325,0 chrIV 1152655 . G A 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.968;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.466;QD=20.63;ReadPosRankSum=0.346;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3045,316,0 chrIV 1152705 . G A 3943.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.9944;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.91;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3943,435,0 chrIV 1153009 . G A 3533.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3533,387,0 chrIV 1153171 . G T 2604 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.43;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2637,288,0 chrIV 1153303 . C T 2793 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2826,306,0 chrIV 1153537 . A G 3523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=157;Dels=0.00;FS=3.830;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.872;QD=22.44;ReadPosRankSum=1.688;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3523,402,0 chrIV 1153699 . C T 2777 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.7982;MLEAC=2;MLEAF=1.00;MQ=60.38;MQ0=0;QD=22.76;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2810,303,0 chrIV 1153966 . T C 1925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=3.812;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.954;QD=21.63;ReadPosRankSum=1.693;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1958,225,0 chrIV 1154263 . T C 2486 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.3252;MLEAC=2;MLEAF=1.00;MQ=29.95;MQ0=12;MQRankSum=-1.500;QD=13.15;ReadPosRankSum=2.422;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:2,186:189:99:2519,288,0 chrIV 1154321 . C T 2085 filter AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.0719;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=19;QD=10.12;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,206:206:99:2118,231,0 chrIV 1154405 . A G 1983 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=21.78;MQ0=65;MQRankSum=-2.026;QD=10.60;ReadPosRankSum=2.369;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:2016,234,0 chrIV 1154468 . A G 1048 filter AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=16.80;MQ0=37;QD=5.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:1081,126,0 chrIV 1154507 . C G 289 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.32;MQ0=15;QD=2.14;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:1,133:135:36:322,36,0 chrIV 1154509 . A T 302 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.44;MQ0=11;MQRankSum=-1.915;QD=2.40;ReadPosRankSum=2.407;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:3,123:126:36:335,36,0 chrIV 1154513 . A G 241 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.67;MQ0=7;MQRankSum=-1.347;QD=2.10;ReadPosRankSum=1.700;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:3,112:115:30:274,30,0 chrIV 1154517 . G C 199.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.86;MQ0=1;QD=1.99;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:1,99:100:27:232,27,0 chrIV 1154518 . C A 210.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.86;MQ0=1;QD=2.10;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:1,99:100:27:243,27,0 chrIV 1154523 . G T 207.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=1;QD=2.65;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:1,77:78:27:240,27,0 chrIV 1154524 . T G 200.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=1;QD=2.56;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:1,77:78:27:233,27,0 chrIV 1154525 . A G 198.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=1;QD=2.54;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:1,77:78:27:231,27,0 chrIV 1154528 . A G 211.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=1;QD=2.45;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:1,85:86:27:244,27,0 chrIV 1154538 . G C 228 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.48;MQ0=14;QD=2.51;SB=-1.302e-02 GT:AD:DP:GQ:PL 1/1:1,90:91:30:261,30,0 chrIV 1154539 . C A 245 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.39;MQ0=15;QD=2.66;SB=-1.302e-02 GT:AD:DP:GQ:PL 1/1:1,90:92:30:278,30,0 chrIV 1154573 . A G 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=11.48;MQ0=35;MQRankSum=-0.491;QD=0.78;ReadPosRankSum=2.237;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:2,56:58:9:77,9,0 chrIV 1154574 . A T 50.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.33;MQ0=35;QD=0.91;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,56:56:9:83,9,0 chrIV 1154575 . C T 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.13;MQ0=37;QD=0.83;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,58:58:9:80,9,0 chrIV 1154576 . A G 50.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.04;MQ0=38;QD=0.86;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,58:59:9:83,9,0 chrIV 1154583 . T A 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.66;MQ0=56;QD=0.31;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,76:77:6:55,6,0 chrIV 1155755 . T A 154.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=9.58;MQ0=88;MQRankSum=0.791;QD=1.56;ReadPosRankSum=1.423;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:1,98:99:21:187,21,0 chrIV 1155785 . G T 267 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=12.77;MQ0=78;QD=2.81;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,95:95:33:300,33,0 chrIV 1156042 . T C 1961 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=22.54;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1994,231,0 chrIV 1156050 . A G 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=4.674;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;MQRankSum=0.000;QD=19.61;ReadPosRankSum=1.693;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1778,204,0 chrIV 1156055 . C T 1769 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=21.06;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1802,198,0 chrIV 1156234 . G T 2178 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.56;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2211,240,0 chrIV 1156298 . G A 1810 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=22.07;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1843,201,0 chrIV 1156299 . G A 1817 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=22.71;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1850,198,0 chrIV 1156399 . T C 1525 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=20.61;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1558,183,0 chrIV 1156406 . A G 1447 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.97;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1480,174,0 chrIV 1156605 . G A 1980 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.3838;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.76;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:1,89:91:99:2013,225,0 chrIV 1156810 . T C 2045 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.99;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2078,237,0 chrIV 1156880 . C T 1934 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.30;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1967,225,0 chrIV 1157067 . C T 1867 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=24.89;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1900,210,0 chrIV 1157122 . T C 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=0.591;QD=21.79;ReadPosRankSum=1.691;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1885,213,0 chrIV 1157139 . C A 1687 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=19.62;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1720,192,0 chrIV 1157212 . C T 2029 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.54;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2062,219,0 chrIV 1157251 . A G 2506 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=23.42;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2539,291,0 chrIV 1157271 . A G 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=3.9793;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=0.654;QD=21.18;ReadPosRankSum=1.699;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2299,264,0 chrIV 1157324 . T A 1909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.307;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=102.4568;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=0.392;QD=17.68;ReadPosRankSum=-1.503;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:1942,202,0 chrIV 1157741 . C T 2732 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.8449;MLEAC=2;MLEAF=1.00;MQ=60.52;MQ0=0;QD=22.21;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2765,303,0 chrIV 1157841 . C G 2620 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.2329;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.47;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2653,294,0 chrIV 1157851 . T G 2408 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.67;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2441,282,0 chrIV 1157970 . T C 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=143;Dels=0.00;FS=2.953;HaplotypeScore=11.0451;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.342;QD=19.80;ReadPosRankSum=2.415;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:2,138:143:99:2865,327,0 chrIV 1158004 . T C 3136 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=21.93;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3169,360,0 chrIV 1158072 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.61;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3058,345,0 chrIV 1158186 . A C 3047 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.61;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3080,354,0 chrIV 1158330 . T C 2810 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=22.30;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2843,321,0 chrIV 1158334 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=21.60;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2863,321,0 chrIV 1158385 . G C 2826 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=20.19;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2859,327,0 chrIV 1158404 . C G 2859 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=20.57;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2892,333,0 chrIV 1158479 . T C 2468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=149;Dels=0.00;FS=2.748;HaplotypeScore=6.6179;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;MQRankSum=0.272;QD=16.56;ReadPosRankSum=2.351;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2501,285,0 chrIV 1158484 . A G 2473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=142;Dels=0.00;FS=9.420;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;MQRankSum=0.044;QD=17.42;ReadPosRankSum=2.362;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:2506,285,0 chrIV 1158526 . C G 2196 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.22;MQ0=0;QD=14.45;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2229,261,0 chrIV 1158528 . C T 2293 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.96;MQ0=0;QD=15.29;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2326,261,0 chrIV 1158562 . C G 2352 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=14.89;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2385,276,0 chrIV 1158574 . G A 2358 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=17.60;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2391,264,0 chrIV 1158582 . G A 2144 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;QD=15.76;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2177,249,0 chrIV 1158614 . G C 2333 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.0166;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=16.91;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2366,276,0 chrIV 1158667 . A G 2985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.805;QD=19.01;ReadPosRankSum=1.710;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3018,333,0 chrIV 1158727 . C T 3058 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6021;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=19.35;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3091,342,0 chrIV 1158961 . A G 2321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2574;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=0.113;QD=21.29;ReadPosRankSum=1.700;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:2354,270,0 chrIV 1159022 . A G 2004 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=11.7791;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.46;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2037,240,0 chrIV 1159053 . G A 2272 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=21.23;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2305,252,0 chrIV 1159088 . T A 2239 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=20.93;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2272,252,0 chrIV 1159113 . C T 1818 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.23;MQ0=0;QD=20.43;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1851,210,0 chrIV 1159133 . A G 1445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=78;Dels=0.00;FS=2.836;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;MQRankSum=-2.323;QD=18.53;ReadPosRankSum=2.387;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1478,174,0 chrIV 1159150 . T A 1068 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.60;MQ0=0;QD=17.23;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1101,129,0 chrIV 1159171 . T C 969 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.64;MQ0=0;QD=16.15;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1002,120,0 chrIV 1159174 . A C 947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.55;MQ0=0;MQRankSum=-2.351;QD=15.52;ReadPosRankSum=2.885;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:3,58:61:99:980,120,0 chrIV 1159206 . C T 1125 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=18.75;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1158,126,0 chrIV 1159214 . A G 1088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;MQRankSum=-0.866;QD=18.13;ReadPosRankSum=1.675;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1121,126,0 chrIV 1159231 . C T 1384 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=19.77;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1417,156,0 chrIV 1159301 . G A 806 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=0;QD=19.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:96:839,96,0 chrIV 1159328 . A G 391 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=10.7206;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=0;MQRankSum=-1.456;QD=15.64;ReadPosRankSum=1.595;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:1,24:25:54:424,54,0 chrIV 1159357 . A G 166.01 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.04;MQ0=0;QD=11.07;SB=-2.354e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:27:199,27,0 chrIV 1159364 . G C 145.03 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.25;MQ0=0;QD=8.53;SB=-4.089e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:24:178,24,0 chrIV 1159372 . G T 97.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.075;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=22.00;MQ0=0;MQRankSum=-1.863;QD=5.71;ReadPosRankSum=2.162;SB=3.84 GT:AD:DP:GQ:PL 1/1:2,15:17:18:130,18,0 chrIV 1159375 . C A 75.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.415;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;MQRankSum=-2.321;QD=4.43;ReadPosRankSum=2.548;SB=2.74 GT:AD:DP:GQ:PL 1/1:4,13:17:15:108,15,0 chrIV 1159381 . C T 97.13 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.49;MQ0=0;QD=5.11;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:18:130,18,0 chrIV 1159389 . C T 217 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=31.60;MQ0=0;QD=10.33;SB=-1.518e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:30:250,30,0 chrIV 1159396 . T G 186.01 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=10.33;SB=-2.378e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:27:219,27,0 chrIV 1159464 . A T 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.837;DP=19;Dels=0.00;FS=49.656;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=38.21;MQ0=0;MQRankSum=0.694;QD=1.21;ReadPosRankSum=-1.266;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:9,10:19:53:53,0,80 chrIV 1159550 . G A 2037 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=0;QD=25.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2070,225,0 chrIV 1159644 . A G 677 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.12;MQ0=8;QD=16.12;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:84:710,84,0 chrIV 1159689 . A G 467 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=5;QD=14.15;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:57:500,57,0 chrIV 1159713 . C T 1022 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=23;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1055,114,0 chrIV 1159784 . C T 1197 filter AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.70;MQ0=76;QD=8.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:39,109:148:99:1230,141,0 chrIV 1159797 . A G 984 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=18.14;MQ0=82;MQRankSum=-1.584;QD=6.47;ReadPosRankSum=1.683;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:1017,114,0 chrIV 1159860 . A G 249 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=13.99;MQ0=45;QD=3.28;SB=-8.689e-03 GT:AD:DP:GQ:PL 1/1:0,76:76:33:282,33,0 chrIV 1161225 . G A 234 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.60;MQ0=39;QD=3.21;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:37,36:73:30:267,30,0 chrIV 1161228 . T A 230 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=38;QD=3.19;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:37,35:72:30:263,30,0 chrIV 1161230 . A T 239 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=38;QD=3.32;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:38,34:72:30:272,30,0 chrIV 1161242 . A G 255 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.89;MQ0=38;QD=3.49;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:38,35:73:33:288,33,0 chrIV 1161243 . A C 251 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.03;MQ0=37;QD=3.49;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:37,35:72:33:284,33,0 chrIV 1161246 . C T 268 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.89;MQ0=38;QD=3.67;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:36,35:73:33:301,33,0 chrIV 1161249 . G A 272 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.17;MQ0=36;QD=3.83;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:36,35:71:33:305,33,0 chrIV 1161251 . G T 278 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.31;MQ0=35;QD=3.97;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:35,35:70:33:311,33,0 chrIV 1161252 . G A 257 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.31;MQ0=35;QD=3.67;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:34,36:70:33:290,33,0 chrIV 1161258 . T C 249 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.86;MQ0=32;QD=3.61;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:32,37:69:33:282,33,0 chrIV 1161261 . G A 267 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.16;MQ0=30;QD=3.99;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:29,38:67:33:300,33,0 chrIV 1161264 . A G 223 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.04;MQ0=29;QD=3.48;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:29,35:64:30:256,30,0 chrIV 1161267 . A C 237 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.07;MQ0=27;QD=3.95;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:27,33:60:30:270,30,0 chrIV 1161269 . C G 247 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.07;MQ0=27;QD=4.12;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:26,33:60:30:280,30,0 chrIV 1161282 . C T 184.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=24;QD=3.41;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:24,30:54:24:217,24,0 chrIV 1161283 . A T 186.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=24;QD=3.45;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:24,30:54:24:219,24,0 chrIV 1161289 . G T 167.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.40;MQ0=21;QD=3.41;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:21,28:49:21:200,21,0 chrIV 1161300 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.18;MQ0=24;QD=0.52;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:24,14:38:6:51,6,0 chrIV 1161302 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.143;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=17.96;MQ0=24;MQRankSum=1.350;QD=0.54;ReadPosRankSum=2.143;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:26,14:40:6:53,6,0 chrIV 1161321 . T C 75.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.84;MQ0=19;QD=2.22;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:17,15:34:12:108,12,0 chrIV 1161322 . T C 74.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.42;MQ0=17;QD=2.33;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:17,15:32:12:107,12,0 chrIV 1161325 . T A 71.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=16;QD=2.31;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:15,16:31:12:104,12,0 chrIV 1161326 . G A 76.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.05;MQ0=15;QD=2.55;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:15,15:30:12:109,12,0 chrIV 1161328 . T G 78.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.05;MQ0=15;QD=2.62;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:15,15:30:12:111,12,0 chrIV 1161337 . A G 73.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.67;MQ0=14;QD=2.04;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:14,22:36:12:106,12,0 chrIV 1161338 . A G 70.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.67;MQ0=14;QD=1.96;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:14,22:36:12:103,12,0 chrIV 1161346 . T C 76.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=42.1238;MLEAC=2;MLEAF=1.00;MQ=23.84;MQ0=12;QD=2.07;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:12,25:37:12:109,12,0 chrIV 1161357 . G T 77.51 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=26.0957;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=10;QD=1.94;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:10,30:40:12:110,12,0 chrIV 1161455 . A G 1991 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=21.18;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2024,234,0 chrIV 1161539 . G A 2034 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=23.38;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2067,225,0 chrIV 1161556 . G A 1897 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=22.06;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1930,213,0 chrIV 1161629 . C T 1837 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.34;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1870,207,0 chrIV 1161688 . T C 2158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=110;Dels=0.00;FS=6.102;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=-0.257;QD=19.62;ReadPosRankSum=2.936;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:3,107:110:99:2191,252,0 chrIV 1161819 . T C 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.378;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.4742;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.771;QD=21.36;ReadPosRankSum=1.252;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,136:140:99:3023,342,0 chrIV 1161890 . G A 2012 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=2.644;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;MQRankSum=0.389;QD=14.79;ReadPosRankSum=2.233;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2045,231,0 chrIV 1161891 . A G 1956 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=135;Dels=0.00;FS=2.618;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;MQRankSum=0.428;QD=14.49;ReadPosRankSum=2.249;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:1989,231,0 chrIV 1161894 . A G 2010 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=3.7006;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;QD=15.23;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2043,237,0 chrIV 1161899 . A G 2112 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=141;Dels=0.00;FS=4.559;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.02;MQ0=0;MQRankSum=0.668;QD=14.98;ReadPosRankSum=1.584;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2145,246,0 chrIV 1161927 . A G 1840 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=12.96;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1873,222,0 chrIV 1161960 . T C 2220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.708;DP=161;Dels=0.00;FS=12.178;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-0.093;QD=13.79;ReadPosRankSum=3.766;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:5,156:161:99:2253,261,0 chrIV 1161972 . A T 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=170;Dels=0.00;FS=6.576;HaplotypeScore=10.1755;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=1.741;QD=16.12;ReadPosRankSum=2.421;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:2774,303,0 chrIV 1162080 . A G 4291.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.01;FS=0.000;HaplotypeScore=12.5402;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=22.47;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4291,495,0 chrIV 1162210 . G A 3876.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=21.07;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3876,420,0 chrIV 1162288 . T C 2731 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.53;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2764,327,0 chrIV 1162357 . A G 2516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-1.703;QD=21.32;ReadPosRankSum=1.615;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2549,288,0 chrIV 1162396 . C G 2353 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.6878;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=19.13;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2386,273,0 chrIV 1162417 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=47.14;MQ0=0;QD=18.81;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2290,255,0 chrIV 1162444 . G A 1923 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=16.72;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1956,219,0 chrIV 1162458 . T C 2135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=131;Dels=0.00;FS=9.771;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;MQRankSum=-1.858;QD=16.30;ReadPosRankSum=2.945;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:3,125:131:99:2168,246,0 chrIV 1162547 . C A 1528 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=16.61;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1561,177,0 chrIV 1162563 . A G 1028 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.80;MQ0=0;QD=14.48;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1061,126,0 chrIV 1162582 . G A 799 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=14.27;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:96:832,96,0 chrIV 1162592 . G A 963 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;QD=17.20;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:996,117,0 chrIV 1162597 . T G 826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.87;MQ0=0;MQRankSum=0.033;QD=15.58;ReadPosRankSum=-1.275;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:859,102,0 chrIV 1162608 . C T 944 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=0;QD=16.56;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:977,117,0 chrIV 1162650 . A C 1766 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=19.62;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1799,204,0 chrIV 1162688 . T C 2273 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=19.26;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2306,270,0 chrIV 1162719 . C T 1993 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.9901;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=18.12;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2026,219,0 chrIV 1162743 . T C 1443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;MQRankSum=-0.161;QD=16.59;ReadPosRankSum=1.611;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1476,177,0 chrIV 1163209 . A G 3642.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=21.68;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3642,426,0 chrIV 1163341 . A T 5747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=270;Dels=0.00;FS=4.086;HaplotypeScore=5.8468;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=-1.629;QD=21.29;ReadPosRankSum=1.706;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:1,269:270:99:5747,630,0 chrIV 1163344 . G A 5299.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=19.85;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,264:267:99:5299,606,0 chrIV 1163436 . G A 6466.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=16.9816;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=24.31;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:6466,700,0 chrIV 1163487 . T C 5066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=270;Dels=0.00;FS=2.829;HaplotypeScore=7.3741;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.486;QD=18.76;ReadPosRankSum=2.404;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:2,268:270:99:5066,585,0 chrIV 1163502 . A G 5348.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=12.6577;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=17.77;SB=-3.082e+03 GT:AD:DP:GQ:PL 1/1:0,298:301:99:5348,612,0 chrIV 1163713 . C T 6011.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=18.0595;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.51;SB=-2.965e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6011,672,0 chrIV 1163794 . C T 5311.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=15.2436;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.77;SB=-2.946e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5311,576,0 chrIV 1164160 . A G 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=172;Dels=0.00;FS=10.683;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=3;MQRankSum=-1.220;QD=21.05;ReadPosRankSum=2.875;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:3620,411,0 chrIV 1164181 . G A 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.607;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.2460;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=3;MQRankSum=-1.620;QD=19.02;ReadPosRankSum=0.495;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,160:168:99:3228,352,0 chrIV 1164247 . A T 5198.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=5.3456;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.80;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5198,564,0 chrIV 1164268 . A G 5631.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=11.3534;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=22.08;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5631,642,0 chrIV 1164487 . T G 4350.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.1781;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.81;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4350,498,0 chrIV 1164502 . A G 4092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=-0.626;QD=20.67;ReadPosRankSum=2.425;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4092,468,0 chrIV 1164513 . T C 4098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=5.179;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=1.181;QD=20.39;ReadPosRankSum=1.698;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4098,468,0 chrIV 1164625 . C T 3471.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.1026;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.66;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3471,375,0 chrIV 1164726 . A C 2289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=100;Dels=0.00;FS=5.809;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-1.939;QD=22.89;ReadPosRankSum=2.928;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:3,95:100:99:2322,267,0 chrIV 1164785 . C T 1875 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=69.2329;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=22.32;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1908,210,0 chrIV 1164862 . C T 1800 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.18;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1833,201,0 chrIV 1165180 . A G 1719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.316;QD=22.92;ReadPosRankSum=1.686;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1752,201,0 chrIV 1165247 . G C 2392 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.36;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2425,279,0 chrIV 1165262 . T A 2551 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.62;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2584,291,0 chrIV 1165519 . G A 2459 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=15.9082;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=19.36;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2492,273,0 chrIV 1165565 . G A 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.7886;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.823;QD=21.57;ReadPosRankSum=1.420;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2664,285,0 chrIV 1165586 . A G 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=1.146;QD=18.65;ReadPosRankSum=1.679;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2476,291,0 chrIV 1165587 . G C 2519 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=18.94;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2552,288,0 chrIV 1165728 . A G 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.479;DP=138;Dels=0.00;FS=3.514;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.190;QD=22.22;ReadPosRankSum=1.580;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3100,336,0 chrIV 1165910 . A G 2573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=0.451;QD=21.44;ReadPosRankSum=1.703;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2606,300,0 chrIV 1166114 . C T 2511 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=21.65;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2544,279,0 chrIV 1166128 . G A 2388 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;QD=18.95;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2421,270,0 chrIV 1166148 . G A 2265 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;QD=19.19;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2298,249,0 chrIV 1166150 . G A 2216 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;QD=18.94;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2249,243,0 chrIV 1166196 . G A 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=98.1786;MLEAC=2;MLEAF=1.00;MQ=32.89;MQ0=0;QD=0.13;SB=-7.258e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:6:44,6,0 chrIV 1166200 . C T 1030 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.97;MQ0=0;QD=9.20;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1063,117,0 chrIV 1166214 . A G 1066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=106;Dels=0.00;FS=11.369;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.55;MQ0=0;MQRankSum=1.196;QD=10.06;ReadPosRankSum=2.403;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1099,123,0 chrIV 1166232 . T A 1394 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=12.79;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1427,162,0 chrIV 1166293 . C A 2514 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.72;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2547,279,0 chrIV 1166364 . G A 3324.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=23.74;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3324,372,0 chrIV 1166461 . C T 3548.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.1320;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=21.25;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3548,399,0 chrIV 1166561 . G A 2897 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.62;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2930,330,0 chrIV 1166645 . G A 2852 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=21.44;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2885,318,0 chrIV 1166693 . G A 3632.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=14.8575;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=22.01;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3632,402,0 chrIV 1166741 . G A 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;MQRankSum=-1.145;QD=17.94;ReadPosRankSum=1.397;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2311,264,0 chrIV 1166743 . A G 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.115;DP=123;Dels=0.00;FS=8.859;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=-2.032;QD=19.33;ReadPosRankSum=3.386;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:4,119:123:99:2410,270,0 chrIV 1166782 . A G 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=3.933;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-0.774;QD=19.90;ReadPosRankSum=1.658;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1904,219,0 chrIV 1166844 . T C 1944 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=19.06;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1977,228,0 chrIV 1166875 . T C 1707 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.54;MQ0=0;QD=14.84;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1740,195,0 chrIV 1166877 . T C 1804 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;QD=15.16;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1837,213,0 chrIV 1166919 . T C 1560 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.97;MQ0=0;QD=13.45;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1593,189,0 chrIV 1166921 . T C 1476 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=0;QD=13.30;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1509,174,0 chrIV 1166937 . T C 1793 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;QD=16.01;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1826,207,0 chrIV 1167052 . C T 2423 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=22.86;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2456,267,0 chrIV 1167225 . T C 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=143;Dels=0.00;FS=2.625;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-1.246;QD=20.15;ReadPosRankSum=2.415;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2915,336,0 chrIV 1167232 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.83;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2980,321,0 chrIV 1167283 . T C 1795 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.2695;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=14.59;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:1828,213,0 chrIV 1167451 . C T 4271.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.6982;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.46;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4271,465,0 chrIV 1167549 . A C 3844.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=19.61;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3844,438,0 chrIV 1167562 . C A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.65;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3507,393,0 chrIV 1167700 . C T 4094.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.5726;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.10;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4094,453,0 chrIV 1167712 . T C 4175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=192;Dels=0.00;FS=7.314;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-0.927;QD=21.74;ReadPosRankSum=2.424;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4175,474,0 chrIV 1167790 . G A 4229.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.9711;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=22.14;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4229,465,0 chrIV 1167802 . G T 3858.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.55;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3858,423,0 chrIV 1167913 . A G 4417.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.31;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4417,507,0 chrIV 1167961 . A G 4843.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.82;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4843,564,0 chrIV 1168958 . C A 4150.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.4043;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=25.46;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4150,450,0 chrIV 1169118 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=171;Dels=0.00;FS=2.970;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-1.516;QD=20.85;ReadPosRankSum=2.378;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3566,405,0 chrIV 1169122 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=21.26;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3508,396,0 chrIV 1169278 . T C 2946 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.75;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2979,336,0 chrIV 1169426 . T C 3938.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.16;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3938,462,0 chrIV 1169720 . T C 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=190;Dels=0.00;FS=7.223;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.019;QD=20.28;ReadPosRankSum=2.424;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3853,441,0 chrIV 1169732 . C A 4021.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.94;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4021,435,0 chrIV 1169819 . G A 2666 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.83;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2699,297,0 chrIV 1170023 . T C 2959 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.76;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2992,348,0 chrIV 1170281 . T C 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-0.525;QD=21.87;ReadPosRankSum=2.417;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3324,381,0 chrIV 1170282 . G A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.34;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3396,381,0 chrIV 1170302 . T C 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=161;Dels=0.00;FS=2.583;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-0.869;QD=20.36;ReadPosRankSum=2.806;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3278,369,0 chrIV 1170425 . C T 4218.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.1643;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.52;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4218,477,0 chrIV 1170508 . G A 4823.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.7673;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.97;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4823,519,0 chrIV 1170698 . G A 4664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=20.7292;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.716;QD=22.21;ReadPosRankSum=-1.499;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:4664,495,0 chrIV 1170836 . G A 3970.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.9859;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.93;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3970,438,0 chrIV 1171148 . T C 7047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=23.7092;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.553;QD=22.51;ReadPosRankSum=2.379;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:2,310:313:99:7047,792,0 chrIV 1171222 . A G 7333.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=10.3574;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.70;SB=-3.496e+03 GT:AD:DP:GQ:PL 1/1:0,322:323:99:7333,828,0 chrIV 1171304 . A G 5861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=22.5088;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.049;QD=20.28;ReadPosRankSum=1.720;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:1,288:289:99:5861,678,0 chrIV 1171409 . T C 5621.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=32.5173;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=19.65;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,283:286:99:5621,636,0 chrIV 1171430 . G C 4512.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=19.36;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:4512,528,0 chrIV 1171598 . G A 3121 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=13.0606;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.95;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3154,348,0 chrIV 1171638 . A G 3549.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.90;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3549,402,0 chrIV 1171739 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=149;Dels=0.00;FS=7.321;HaplotypeScore=9.6130;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.108;QD=22.33;ReadPosRankSum=2.416;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3327,375,0 chrIV 1171894 . A G 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=2.962;HaplotypeScore=12.3565;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.229;QD=21.92;ReadPosRankSum=2.415;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:2,139:144:99:3189,363,0 chrIV 1172008 . C T 2164 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=18.03;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2197,246,0 chrIV 1172012 . G A 2083 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;QD=17.50;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2116,231,0 chrIV 1172018 . C T 2045 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;QD=16.63;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2078,234,0 chrIV 1172051 . A T 1940 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=15.16;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1973,216,0 chrIV 1172058 . A G 1688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=130;Dels=0.00;FS=3.736;HaplotypeScore=4.0622;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;MQRankSum=-0.187;QD=12.98;ReadPosRankSum=1.652;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:1721,201,0 chrIV 1172141 . T C 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.7103;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.144;QD=22.62;ReadPosRankSum=1.708;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3302,375,0 chrIV 1172226 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=19.27;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2769,318,0 chrIV 1172228 . C T 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;MQRankSum=-0.460;QD=20.23;ReadPosRankSum=-1.072;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3007,336,0 chrIV 1172277 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.8562;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=19.83;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3267,360,0 chrIV 1172313 . C T 3882.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.5681;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.25;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3882,429,0 chrIV 1172480 . C T 4115.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.1218;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=21.66;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4115,444,0 chrIV 1172497 . T C 3470.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6993;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.72;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3470,405,0 chrIV 1172576 . G C 4649.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.5992;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.03;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4649,531,0 chrIV 1172695 . G A 3830.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.01;FS=0.000;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=20.16;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3830,408,0 chrIV 1172698 . T C 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=186;Dels=0.00;FS=8.734;HaplotypeScore=3.1898;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=-0.219;QD=18.30;ReadPosRankSum=2.423;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:3403,399,0 chrIV 1172800 . C T 4629.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.04;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4629,513,0 chrIV 1172802 . C T 4628.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=21.13;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4628,507,0 chrIV 1172908 . T C 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=117;Dels=0.00;FS=6.211;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=-1.007;QD=21.37;ReadPosRankSum=2.344;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2533,285,0 chrIV 1172914 . G A 2616 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=21.10;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2649,291,0 chrIV 1172929 . G A 3119 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=21.51;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3152,345,0 chrIV 1173074 . C T 3544.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.72;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3544,390,0 chrIV 1173264 . G T 4389.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.6558;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.60;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4389,477,0 chrIV 1174213 . T C 4767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=216;Dels=0.00;FS=4.273;HaplotypeScore=12.3482;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-1.635;QD=22.07;ReadPosRankSum=1.684;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4767,543,0 chrIV 1174282 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.72;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3605,402,0 chrIV 1174702 . C T 1930 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.02;FS=0.000;HaplotypeScore=15.4321;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.25;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1963,222,0 chrIV 1174816 . C T 3403.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.8755;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=23.31;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3403,378,0 chrIV 1174987 . A T 2367 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=41.15;MQ0=0;QD=22.54;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2400,261,0 chrIV 1175004 . G A 2119 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=20.37;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2152,234,0 chrIV 1175016 . C T 1961 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=20.43;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1994,222,0 chrIV 1175150 . A G 824 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.844;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=0;MQRankSum=-1.693;QD=16.82;ReadPosRankSum=2.350;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,47:49:96:857,96,0 chrIV 1175167 . C T 655 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=21.13;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:75:688,75,0 chrIV 1175169 . C T 619 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=19.97;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:75:652,75,0 chrIV 1175177 . C T 541 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=20.04;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:63:574,63,0 chrIV 1175302 . C T 237 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.06;MQ0=0;QD=21.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:30:270,30,0 chrIV 1175310 . C T 98.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=16.38;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:131,15,0 chrIV 1175327 . G A 78.51 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.05;MQ0=1;QD=6.54;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:111,12,0 chrIV 1175357 . G A 293 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=1;QD=14.65;SB=-8.632e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:36:326,36,0 chrIV 1175360 . C T 291 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=1;QD=14.55;SB=-8.632e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:36:324,36,0 chrIV 1175535 . A T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.19;MQ0=0;QD=0.94;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,19:19:6:49,6,0 chrIV 1175580 . C T 75.51 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.46;MQ0=0;QD=2.60;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,29:29:12:108,12,0 chrIV 1175622 . G T 241 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.78;MQ0=0;QD=6.34;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,38:38:30:274,30,0 chrIV 1175624 . C A 230 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.78;MQ0=0;QD=6.05;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,38:38:30:263,30,0 chrIV 1175631 . A C 225 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.077;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.11;MQ0=0;MQRankSum=0.609;QD=6.08;ReadPosRankSum=1.639;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:1,36:37:30:258,30,0 chrIV 1175634 . A T 244 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.11;MQ0=0;MQRankSum=0.421;QD=6.59;ReadPosRankSum=1.639;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:1,36:37:30:277,30,0 chrIV 1175636 . A C 223 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.11;MQ0=0;QD=6.03;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:30:256,30,0 chrIV 1175762 . C A 493 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;MQRankSum=-0.660;QD=5.87;ReadPosRankSum=1.691;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:1,83:84:60:526,60,0 chrIV 1175763 . G C 476 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;QD=5.73;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:60:509,60,0 chrIV 1175764 . T C 482 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;QD=5.81;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:60:515,60,0 chrIV 1175766 . C A 496 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=5.90;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,84:84:60:529,60,0 chrIV 1175772 . A G 515 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.95;MQ0=0;QD=5.42;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,92:95:63:548,63,0 chrIV 1175794 . T C 1221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.80;MQ0=0;MQRankSum=-1.232;QD=11.74;ReadPosRankSum=1.699;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1254,144,0 chrIV 1175827 . A G 1623 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;QD=18.87;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1656,186,0 chrIV 1175944 . A G 2577 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=0;QD=22.41;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2610,294,0 chrIV 1176041 . C A 2560 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=23.06;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2593,282,0 chrIV 1176102 . C T 1958 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.31;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1991,216,0 chrIV 1176149 . T C 2266 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.7951;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.00;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2299,264,0 chrIV 1176222 . A C 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5186;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.142;QD=22.60;ReadPosRankSum=1.501;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3084,360,0 chrIV 1176285 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=4.229;HaplotypeScore=13.5667;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.344;QD=23.09;ReadPosRankSum=1.684;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3302,372,0 chrIV 1176543 . G A 3399.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.12;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3399,384,0 chrIV 1176633 . T C 2656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=3.165;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.398;QD=23.30;ReadPosRankSum=1.702;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2689,306,0 chrIV 1176840 . A T 3030 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.49;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3063,339,0 chrIV 1176852 . T C 2679 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.26;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2712,309,0 chrIV 1176974 . G A 3132 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3165,345,0 chrIV 1177437 . A G 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.391;QD=22.06;ReadPosRankSum=1.708;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3165,360,0 chrIV 1177557 . C T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=24.13;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3330,366,0 chrIV 1177587 . T C 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=135;Dels=0.01;FS=6.454;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.211;QD=20.09;ReadPosRankSum=2.376;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2745,312,0 chrIV 1177590 . T C 2604 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.8997;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.58;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2637,300,0 chrIV 1177650 . C T 1944 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=19.25;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1977,222,0 chrIV 1177720 . C T 2394 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.02;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2427,258,0 chrIV 1177776 . C T 2066 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.87;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2099,237,0 chrIV 1178023 . A C 2774 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=23.12;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2807,324,0 chrIV 1178080 . G T 2813 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=24.04;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2846,309,0 chrIV 1178089 . C T 2736 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=24.00;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2769,303,0 chrIV 1178116 . G C 2042 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=19.45;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2075,246,0 chrIV 1178118 . T C 2017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=106;Dels=0.00;FS=10.200;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;MQRankSum=-0.743;QD=19.03;ReadPosRankSum=2.934;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:3,103:106:99:2050,243,0 chrIV 1178218 . C A 1974 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.2989;MLEAC=2;MLEAF=1.00;MQ=40.66;MQ0=0;QD=15.79;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2007,222,0 chrIV 1178230 . G A 1996 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=0;QD=14.79;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2029,225,0 chrIV 1178242 . A G 1719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=134;Dels=0.00;FS=3.042;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.60;MQ0=0;MQRankSum=-1.881;QD=12.83;ReadPosRankSum=2.413;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:1752,198,0 chrIV 1178243 . G A 1809 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=0;QD=13.70;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:1842,201,0 chrIV 1178253 . C A 1906 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=38.81;MQ0=0;QD=13.42;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:1939,213,0 chrIV 1178302 . T A 1809 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=14.47;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1842,207,0 chrIV 1178350 . C A 1018 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=11.31;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1051,117,0 chrIV 1178539 . C T 2529 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.07;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2562,276,0 chrIV 1178648 . G A 2812 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.8391;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.32;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2845,321,0 chrIV 1178899 . A C 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.266;DP=172;Dels=0.00;FS=15.343;HaplotypeScore=3.8781;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.300;QD=19.95;ReadPosRankSum=3.083;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:4,168:172:99:3432,396,0 chrIV 1178902 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=170;Dels=0.00;FS=11.785;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=-1.054;QD=19.75;ReadPosRankSum=2.923;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:3358,375,0 chrIV 1178923 . T C 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=3.002;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;MQRankSum=-0.894;QD=16.88;ReadPosRankSum=2.319;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:2885,327,0 chrIV 1178966 . A C 2451 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=14.25;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2484,282,0 chrIV 1178968 . T C 2388 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;QD=13.80;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:2421,276,0 chrIV 1178975 . C T 2383 SnpCluster AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=0;QD=13.31;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:2416,258,0 chrIV 1178998 . C T 3007 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=16.25;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3040,342,0 chrIV 1179154 . C T 4280.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.8084;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=22.41;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4280,480,0 chrIV 1179193 . G A 4859.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.3579;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=23.70;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4859,546,0 chrIV 1179245 . A G 4630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.755;DP=209;Dels=0.00;FS=11.814;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=1.851;QD=22.15;ReadPosRankSum=2.957;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:3,206:209:99:4630,534,0 chrIV 1179478 . C T 4989.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.0717;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=21.60;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:4989,561,0 chrIV 1179516 . T C 4656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=211;Dels=0.00;FS=3.569;HaplotypeScore=15.4170;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=0.393;QD=22.07;ReadPosRankSum=1.682;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:1,206:211:99:4656,534,0 chrIV 1179642 . T C 3360.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.8102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3360,381,0 chrIV 1179778 . G A 3681.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.01;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3681,405,0 chrIV 1179847 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.19;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2234,255,0 chrIV 1179958 . T A 2980 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3013,336,0 chrIV 1180009 . T C 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=143;Dels=0.00;FS=9.502;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.950;QD=19.25;ReadPosRankSum=2.823;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:2786,318,0 chrIV 1180090 . A G 2636 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.97;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2669,303,0 chrIV 1180093 . A G 2472 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.60;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2505,288,0 chrIV 1180237 . C T 2944 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2977,324,0 chrIV 1180738 . G A 3702.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.68;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3702,399,0 chrIV 1181057 . A G 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.577;DP=128;Dels=0.00;FS=3.295;HaplotypeScore=13.7040;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=1.347;QD=23.11;ReadPosRankSum=-0.027;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2991,345,0 chrIV 1181312 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=22.35;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2290,249,0 chrIV 1181316 . A G 1936 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.38;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1969,231,0 chrIV 1181427 . A T 1449 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=21.00;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1482,162,0 chrIV 1181437 . C T 1765 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=22.34;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1798,201,0 chrIV 1181542 . G A 1277 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=16.37;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1310,153,0 chrIV 1181555 . G C 1107 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.21;MQ0=0;QD=14.19;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1140,129,0 chrIV 1181605 . G A 1513 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=38.26;MQ0=0;QD=14.98;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1546,168,0 chrIV 1181607 . G A 1513 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=39.06;MQ0=0;QD=14.55;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1546,171,0 chrIV 1181608 . G A 1548 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=0;QD=14.74;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1581,174,0 chrIV 1181621 . A C 1030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.295;DP=120;Dels=0.00;FS=20.686;HaplotypeScore=20.3066;MLEAC=2;MLEAF=1.00;MQ=42.72;MQ0=0;MQRankSum=-1.455;QD=8.58;ReadPosRankSum=5.426;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:15,102:120:99:1063,140,0 chrIV 1181703 . A G 3833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=160;Dels=0.00;FS=10.340;HaplotypeScore=9.1880;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.032;QD=23.96;ReadPosRankSum=2.879;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:3,155:160:99:3833,441,0 chrIV 1182010 . T C 4313.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.06;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4313,480,0 chrIV 1182055 . A G 4267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=187;Dels=0.00;FS=3.476;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=0.472;QD=22.82;ReadPosRankSum=1.714;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4267,492,0 chrIV 1182082 . G A 4516.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=23.40;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4516,513,0 chrIV 1182121 . T G 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=177;Dels=0.00;FS=2.902;HaplotypeScore=9.1958;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=0.437;QD=22.95;ReadPosRankSum=2.297;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4062,468,0 chrIV 1182157 . G A 3555.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=15.6388;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=23.08;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3555,390,0 chrIV 1182313 . A G 3834.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=20.18;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3834,447,0 chrIV 1182317 . G A 3928.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=21.12;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3928,426,0 chrIV 1182328 . C T 3419.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.4721;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=19.32;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3419,378,0 chrIV 1182359 . A G 2545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=15.8411;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=0.217;QD=16.31;ReadPosRankSum=2.177;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:2,151:156:99:2578,280,0 chrIV 1182394 . C T 2855 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=19.42;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2888,318,0 chrIV 1182406 . A G 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=0.636;QD=19.22;ReadPosRankSum=1.666;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:1,158:162:99:3147,363,0 chrIV 1182448 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.689;DP=181;Dels=0.00;FS=6.068;HaplotypeScore=10.3544;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=0.373;QD=18.11;ReadPosRankSum=1.311;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:3,175:181:99:3278,375,0 chrIV 1182460 . A G 3363.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.7963;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.38;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,179:183:99:3363,390,0 chrIV 1182566 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.0237;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=23.01;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3981,429,0 chrIV 1182715 . A C 5278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=231;Dels=0.00;FS=3.205;HaplotypeScore=10.0491;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.535;QD=22.85;ReadPosRankSum=1.656;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:1,227:231:99:5278,617,0 chrIV 1182860 . T C 3979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=179;Dels=0.00;FS=3.871;HaplotypeScore=9.9795;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.265;QD=22.23;ReadPosRankSum=1.713;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3979,462,0 chrIV 1183017 . C T 2822 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.05;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2855,315,0 chrIV 1183224 . G T 3767.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.62;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3767,408,0 chrIV 1183454 . C T 4202.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.9409;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.23;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4202,468,0 chrIV 1184039 . A T 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=155;Dels=0.00;FS=7.065;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.054;QD=22.83;ReadPosRankSum=2.354;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3538,399,0 chrIV 1184165 . T C 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=3.997;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.014;QD=21.35;ReadPosRankSum=1.648;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2659,297,0 chrIV 1184340 . T C 2595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.045;QD=22.37;ReadPosRankSum=1.672;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2628,297,0 chrIV 1184427 . A G 2824 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.77;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2857,324,0 chrIV 1184604 . T A 2172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=110;Dels=0.00;FS=4.181;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-0.252;QD=19.75;ReadPosRankSum=1.701;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2205,243,0 chrIV 1184629 . A C 2286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.930;QD=18.89;ReadPosRankSum=1.703;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2319,264,0 chrIV 1184654 . A T 2526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.251;QD=18.99;ReadPosRankSum=1.706;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2559,288,0 chrIV 1184725 . G A 2660 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.96;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2693,294,0 chrIV 1184765 . C T 2337 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.15;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2370,261,0 chrIV 1184776 . C T 2524 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.72;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2557,291,0 chrIV 1184923 . C T 4824.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.7198;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.12;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4824,531,0 chrIV 1184947 . C T 4543.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.83;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4543,504,0 chrIV 1185226 . C T 4616.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=18.8595;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.27;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4616,516,0 chrIV 1185268 . T G 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.234;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.2111;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.432;QD=20.19;ReadPosRankSum=2.149;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:3978,468,0 chrIV 1185334 . A G 4702.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.50;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4702,537,0 chrIV 1185403 . A C 4353.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.44;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,190:194:99:4353,495,0 chrIV 1185490 . T C 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=186;Dels=0.00;FS=3.594;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=1.316;QD=21.69;ReadPosRankSum=1.694;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,182:186:99:4035,462,0 chrIV 1185548 . G A 4363.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.83;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4363,489,0 chrIV 1185562 . T C 4212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=224;Dels=0.00;FS=6.035;HaplotypeScore=13.0526;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-1.446;QD=18.80;ReadPosRankSum=2.906;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:3,220:224:99:4212,477,0 chrIV 1185649 . T C 5093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=20.2914;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.716;QD=23.47;ReadPosRankSum=0.636;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,214:217:99:5093,582,0 chrIV 1185927 . C T 4885.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.4673;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.55;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4885,534,0 chrIV 1186055 . C G 4312.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.02;FS=0.000;HaplotypeScore=44.2720;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.53;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4312,483,0 chrIV 1186096 . G T 4181.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.01;FS=0.000;HaplotypeScore=20.0757;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.01;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4181,465,0 chrIV 1186191 . A T 4559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=205;Dels=0.00;FS=5.838;HaplotypeScore=21.4342;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.806;QD=22.24;ReadPosRankSum=2.826;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:3,202:205:99:4559,498,0 chrIV 1186274 . G A 5322.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.8784;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.76;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5322,576,0 chrIV 1186391 . C T 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=3.159;HaplotypeScore=10.5885;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.453;QD=22.46;ReadPosRankSum=0.732;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3436,384,0 chrIV 1186610 . G A 3021 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.89;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3054,342,0 chrIV 1186629 . T C 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=127;Dels=0.00;FS=2.973;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.398;QD=21.80;ReadPosRankSum=2.370;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:2,123:127:99:2801,318,0 chrIV 1186685 . A G 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=3.643;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.705;QD=21.34;ReadPosRankSum=1.644;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2551,294,0 chrIV 1186811 . G A 3119 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.10;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3152,345,0 chrIV 1186949 . G A 2494 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.50;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2527,285,0 chrIV 1187337 . T C 2546 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2579,297,0 chrIV 1187416 . T C 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=126;Dels=0.00;FS=5.563;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.705;QD=22.90;ReadPosRankSum=1.705;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2919,333,0 chrIV 1187649 . A G 1979 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=21.51;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2012,225,0 chrIV 1187661 . G A 1652 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=17.96;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1685,192,0 chrIV 1187672 . T A 1907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.9056;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.974;QD=19.46;ReadPosRankSum=1.660;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1940,213,0 chrIV 1187718 . A G 1757 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=16.89;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1790,210,0 chrIV 1187870 . A G 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=0.320;QD=22.50;ReadPosRankSum=1.679;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2958,339,0 chrIV 1187884 . C T 2640 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=21.82;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2673,303,0 chrIV 1188090 . G A 2838 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.05;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2871,321,0 chrIV 1188542 . A G 3648.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3648,417,0 chrIV 1188946 . G A 4437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.283;QD=23.60;ReadPosRankSum=0.927;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4437,474,0 chrIV 1189283 . T C 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=132;Dels=0.00;FS=6.611;HaplotypeScore=8.6875;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.466;QD=21.40;ReadPosRankSum=2.374;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:2,128:132:99:2858,324,0 chrIV 1189463 . C T 2525 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.6587;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.88;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2558,285,0 chrIV 1189499 . T C 2064 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.04;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2097,243,0 chrIV 1189643 . C A 2329 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.25;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2362,258,0 chrIV 1189652 . T C 2338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=109;Dels=0.00;FS=3.472;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-1.510;QD=21.45;ReadPosRankSum=1.700;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2371,264,0 chrIV 1189996 . A G 1712 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=18.61;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1745,198,0 chrIV 1190196 . T C 2752 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.37;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2785,321,0 chrIV 1190854 . G A 3340.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.0729;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.57;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3340,360,0 chrIV 1190973 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3296,369,0 chrIV 1191039 . T C 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=164;Dels=0.00;FS=9.603;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.423;QD=22.82;ReadPosRankSum=2.896;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3742,426,0 chrIV 1191127 . T C 2962 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.78;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2995,339,0 chrIV 1191177 . A G 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=3.044;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-0.859;QD=23.31;ReadPosRankSum=1.679;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3087,351,0 chrIV 1191233 . C G 3224.03 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.03;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3257,366,0 chrIV 1191616 . G A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.07;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3853,423,0 chrIV 1191716 . G C 2677 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.40;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2710,306,0 chrIV 1191917 . G A 1125 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=11.60;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1158,129,0 chrIV 1191935 . G A 1622 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.4427;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=14.35;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1655,183,0 chrIV 1192391 . G C 3517.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.84;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3517,402,0 chrIV 1192530 . C T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=14.6368;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.99;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3518,384,0 chrIV 1193217 . T C 3225.28 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7988;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.28;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3258,369,0 chrIV 1193225 . T C 3226.07 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=161;Dels=0.00;FS=3.036;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.873;QD=20.04;ReadPosRankSum=2.419;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:3259,375,0 chrIV 1193279 . T C 3108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-0.452;QD=19.55;ReadPosRankSum=1.688;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3141,360,0 chrIV 1193452 . T C 3153 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=16.4875;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.34;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3186,363,0 chrIV 1193659 . A G 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=162;Dels=0.00;FS=3.318;HaplotypeScore=10.3216;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.388;QD=20.72;ReadPosRankSum=1.646;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3356,390,0 chrIV 1193841 . G A 4312.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=17.4752;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.11;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4312,492,0 chrIV 1193937 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.73;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3296,375,0 chrIV 1194088 . A G 4764.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.06;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4764,543,0 chrIV 1194138 . C T 4049.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.14;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4049,447,0 chrIV 1194434 . T C 3708.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.9111;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3708,420,0 chrIV 1194510 . T G 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.622;DP=159;Dels=0.00;FS=3.386;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.563;QD=21.72;ReadPosRankSum=-0.585;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3453,374,0 chrIV 1194899 . C T 3799.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=19.8405;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.16;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3799,411,0 chrIV 1194976 . C T 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=149;Dels=0.00;FS=3.289;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.084;QD=22.28;ReadPosRankSum=-0.729;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3319,363,0 chrIV 1195067 . G A 2018 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.47;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2051,222,0 chrIV 1195092 . C T 2129 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=19.90;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2162,237,0 chrIV 1195196 . C T 2839 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.86;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2872,312,0 chrIV 1195400 . C T 2543 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=20.67;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2576,279,0 chrIV 1195418 . A G 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.093;DP=139;Dels=0.00;FS=7.423;HaplotypeScore=11.8228;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=0.508;QD=18.33;ReadPosRankSum=2.378;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2581,294,0 chrIV 1195577 . A G 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=160;Dels=0.00;FS=13.597;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.786;QD=21.33;ReadPosRankSum=2.918;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3413,405,0 chrIV 1195958 . T A 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=3.305;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.417;QD=23.90;ReadPosRankSum=1.656;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3298,363,0 chrIV 1196228 . A G 1837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.466;QD=19.75;ReadPosRankSum=1.658;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1870,213,0 chrIV 1196334 . G T 2157 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=22.01;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2190,243,0 chrIV 1196388 . T C 2246 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.8350;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=22.46;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2279,261,0 chrIV 1196410 . A G 2297 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=22.97;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2330,267,0 chrIV 1196441 . G T 1830 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=22.05;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1863,213,0 chrIV 1196505 . A G 1951 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;QD=19.71;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1984,225,0 chrIV 1196516 . T C 2030 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=19.15;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2063,234,0 chrIV 1196539 . T C 1571 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=37.29;MQ0=0;QD=15.55;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1604,189,0 chrIV 1196547 . G A 1629 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=0;QD=15.66;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1662,180,0 chrIV 1196567 . G C 1225 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=0;QD=11.78;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1258,144,0 chrIV 1196570 . A T 1183 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=0;QD=11.49;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1216,132,0 chrIV 1196603 . T C 678 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=63.3339;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;QD=7.62;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:84:711,84,0 chrIV 1196608 . T A 156.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=108;Dels=0.03;FS=6.117;HaplotypeScore=87.2043;MLEAC=2;MLEAF=1.00;MQ=34.47;MQ0=0;MQRankSum=-2.914;QD=1.45;ReadPosRankSum=2.895;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:3,102:105:21:189,21,0 chrIV 1196619 . A G 1180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.02;FS=0.000;HaplotypeScore=20.8206;MLEAC=2;MLEAF=1.00;MQ=39.99;MQ0=0;MQRankSum=1.640;QD=10.26;ReadPosRankSum=1.119;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1213,141,0 chrIV 1196964 . A G 4466.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4466,507,0 chrIV 1197033 . G A 4063.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.6325;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.38;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4063,462,0 chrIV 1197080 . A G 4378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.179;QD=22.45;ReadPosRankSum=1.714;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4378,495,0 chrIV 1197114 . G A 4704.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.19;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4704,507,0 chrIV 1197900 . G C 3511.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3511,405,0 chrIV 1198335 . G A 3225.28 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.9341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3258,369,0 chrIV 1198463 . C T 4184.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.12;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4184,459,0 chrIV 1198548 . G C 4263.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.42;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4263,486,0 chrIV 1199289 . A T 3720.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.9171;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.54;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3720,405,0 chrIV 1199588 . T C 3177 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.06;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3210,363,0 chrIV 1199672 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.47;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3279,354,0 chrIV 1199944 . G A 3126 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.4471;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.84;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3159,345,0 chrIV 1199953 . T C 2981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=151;Dels=0.00;FS=5.578;HaplotypeScore=2.5257;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-0.900;QD=19.74;ReadPosRankSum=2.927;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3014,345,0 chrIV 1200582 . C T 2480 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.14;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2513,276,0 chrIV 1200711 . A G 2383 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.6529;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.28;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2416,273,0 chrIV 1200733 . G T 2158 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.62;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2191,240,0 chrIV 1200736 . G A 1980 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=18.17;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2013,231,0 chrIV 1200861 . C T 2214 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.14;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2247,240,0 chrIV 1200872 . T A 2134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.9429;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.099;QD=20.32;ReadPosRankSum=1.632;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2167,237,0 chrIV 1200988 . A T 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=136;Dels=0.00;FS=3.777;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=1.656;QD=24.82;ReadPosRankSum=1.681;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3376,363,0 chrIV 1201269 . G A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.70;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3389,372,0 chrIV 1201367 . G A 3215 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.13;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3248,369,0 chrIV 1201380 . G A 2976 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.55;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3009,339,0 chrIV 1201525 . A G 3030 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.49;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3063,348,0 chrIV 1201527 . C A 3086 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=22.36;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3119,345,0 chrIV 1201621 . C T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.3608;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.83;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3598,402,0 chrIV 1201657 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.00;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3565,408,0 chrIV 1201701 . A T 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-1.109;QD=22.70;ReadPosRankSum=1.682;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3211,360,0 chrIV 1201870 . A C 1819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=107;Dels=0.00;FS=3.177;HaplotypeScore=7.0104;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=0.948;QD=17.00;ReadPosRankSum=0.196;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:1852,213,0 chrIV 1202081 . A G 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-1.588;QD=22.79;ReadPosRankSum=1.660;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3305,375,0 chrIV 1202187 . A G 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.945;DP=148;Dels=0.00;FS=6.731;HaplotypeScore=14.0794;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.811;QD=21.24;ReadPosRankSum=0.961;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3177,366,0 chrIV 1202572 . G A 2209 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.01;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2242,246,0 chrIV 1202749 . C T 2892 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.70;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2925,318,0 chrIV 1202939 . T C 2326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=123;Dels=0.00;FS=3.704;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.022;QD=18.91;ReadPosRankSum=1.704;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2359,276,0 chrIV 1203473 . A G 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=171;Dels=0.00;FS=6.069;HaplotypeScore=16.6190;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.048;QD=22.15;ReadPosRankSum=2.886;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:3,165:171:99:3788,435,0 chrIV 1203503 . T C 3769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=3.776;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-1.172;QD=22.30;ReadPosRankSum=1.711;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3769,429,0 chrIV 1203594 . T C 3532.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3532,399,0 chrIV 1203644 . A C 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.453;QD=23.15;ReadPosRankSum=1.709;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3496,399,0 chrIV 1203716 . G A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.0713;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.32;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3392,384,0 chrIV 1204166 . C T 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.542;QD=22.56;ReadPosRankSum=-1.542;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3339,372,0 chrIV 1204399 . A G 2245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.915;QD=20.41;ReadPosRankSum=1.667;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:2278,261,0 chrIV 1204426 . G A 2240 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.18;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2273,255,0 chrIV 1204806 . C T 4067.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=19.4434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.52;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4067,444,0 chrIV 1204916 . A G 3627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=4.144;HaplotypeScore=12.8086;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.625;QD=22.25;ReadPosRankSum=1.711;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3627,414,0 chrIV 1205010 . C G 4130.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.29;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4130,486,0 chrIV 1205529 . C T 6775.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=18.7529;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.44;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:0,286:289:99:6775,733,0 chrIV 1205559 . G A 5305.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=11.4491;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.29;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5305,576,0 chrIV 1205574 . G A 4424.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=20.67;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4424,504,0 chrIV 1205646 . G C 3765.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.3942;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.80;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3765,435,0 chrIV 1205973 . A G 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=124;Dels=0.00;FS=3.417;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.310;QD=21.16;ReadPosRankSum=1.704;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2657,315,0 chrIV 1206133 . T C 3655.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.25;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3655,414,0 chrIV 1206306 . G A 3346.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.59;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3346,375,0 chrIV 1206415 . G A 2352 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3183;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.76;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2385,258,0 chrIV 1206428 . G T 2363 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=17.90;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2396,273,0 chrIV 1206699 . A T 662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;MQRankSum=-2.183;QD=17.89;ReadPosRankSum=2.317;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,35:37:78:695,78,0 chrIV 1213399 . A T 4470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=194;Dels=0.00;FS=5.684;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.423;QD=23.04;ReadPosRankSum=2.900;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:4470,483,0 chrIV 1213583 . G C 3578.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=15.1829;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.54;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3578,402,0 chrIV 1213633 . A G 3420.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1054;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.42;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3420,390,0 chrIV 1213732 . T C 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=3.531;HaplotypeScore=8.1877;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-0.859;QD=20.90;ReadPosRankSum=1.702;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2457,279,0 chrIV 1214004 . A G 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.645;QD=22.60;ReadPosRankSum=1.623;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3616,408,0 chrIV 1214533 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.39;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3425,369,0 chrIV 1214545 . T C 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=3.027;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-0.770;QD=20.15;ReadPosRankSum=2.328;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:2,140:144:99:2935,342,0 chrIV 1214632 . C T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.65;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3477,384,0 chrIV 1214860 . T A 1946 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.62;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1979,219,0 chrIV 1214907 . G A 2025 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.05;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2058,225,0 chrIV 1215011 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.57;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3300,372,0 chrIV 1215043 . C T 3390.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.93;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3390,366,0 chrIV 1215541 . C T 2928 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.06;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2961,324,0 chrIV 1215625 . C G 2698 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.6091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2731,309,0 chrIV 1216180 . T C 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=174;Dels=0.00;FS=2.739;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;MQRankSum=1.532;QD=23.90;ReadPosRankSum=2.421;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:4158,468,0 chrIV 1216298 . T C 4366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=225;Dels=0.00;FS=8.307;HaplotypeScore=10.3533;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;MQRankSum=-0.996;QD=19.40;ReadPosRankSum=2.406;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:2,221:225:99:4366,489,0 chrIV 1216309 . C G 4111.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.8120;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=19.03;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:4111,471,0 chrIV 1216313 . A G 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=210;Dels=0.00;FS=5.498;HaplotypeScore=4.9537;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.481;QD=18.29;ReadPosRankSum=2.927;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:3,205:210:99:3840,441,0 chrIV 1216405 . T C 2897 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=172;Dels=0.00;FS=7.795;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=36.58;MQ0=0;MQRankSum=-1.070;QD=16.84;ReadPosRankSum=2.392;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:2930,330,0 chrIV 1216411 . A G 2531 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=3.529;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=33.91;MQ0=0;MQRankSum=0.401;QD=16.65;ReadPosRankSum=1.319;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2564,276,0 chrIV 1216413 . C G 2564 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.5500;MLEAC=2;MLEAF=1.00;MQ=33.91;MQ0=0;QD=16.87;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2597,297,0 chrIV 1216417 . A G 2321 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=158;Dels=0.00;FS=2.974;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=33.99;MQ0=0;MQRankSum=0.133;QD=14.69;ReadPosRankSum=2.340;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:2354,273,0 chrIV 1216429 . A G 2187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=152;Dels=0.00;FS=2.964;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=35.22;MQ0=0;MQRankSum=1.431;QD=14.39;ReadPosRankSum=2.417;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2220,255,0 chrIV 1216449 . T C 2157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.394;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;MQRankSum=-1.366;QD=15.19;ReadPosRankSum=1.708;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2190,255,0 chrIV 1216558 . A G 3471.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=22.39;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3471,396,0 chrIV 1216704 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.63;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3126,342,0 chrIV 1216848 . G A 2881 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.4539;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=24.84;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2914,315,0 chrIV 1216903 . C T 3185 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.69;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3218,348,0 chrIV 1217031 . T C 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=126;Dels=0.00;FS=2.856;HaplotypeScore=15.9854;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.149;QD=21.89;ReadPosRankSum=1.160;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:2,122:126:99:2791,318,0 chrIV 1217085 . G T 2985 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.31;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3018,345,0 chrIV 1217086 . T A 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-0.866;QD=20.80;ReadPosRankSum=1.709;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3132,354,0 chrIV 1217139 . T C 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=141;Dels=0.00;FS=3.399;HaplotypeScore=7.4382;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.520;QD=19.64;ReadPosRankSum=1.707;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2802,321,0 chrIV 1217182 . C T 2928 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.18;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2961,333,0 chrIV 1217208 . G A 2618 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.82;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2651,288,0 chrIV 1217501 . G C 2569 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2602,297,0 chrIV 1217807 . C T 2886 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2919,318,0 chrIV 1218262 . T C 2717 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.39;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2750,324,0 chrIV 1218427 . T G 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.0302;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;MQRankSum=0.553;QD=15.60;ReadPosRankSum=1.683;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2232,264,0 chrIV 1218434 . A G 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=145;Dels=0.01;FS=4.341;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;MQRankSum=-0.313;QD=16.79;ReadPosRankSum=1.708;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2468,282,0 chrIV 1218442 . G A 2490 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=17.41;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2523,285,0 chrIV 1218445 . A G 2520 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=17.38;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2553,282,0 chrIV 1218991 . A G 2700 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.8356;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.93;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2733,315,0 chrIV 1219718 . C T 2310 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2343,258,0 chrIV 1219835 . A G 2039 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.91;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2072,234,0 chrIV 1219901 . T C 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.1051;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.577;QD=23.69;ReadPosRankSum=1.703;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2829,318,0 chrIV 1219991 . T C 2664 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2697,306,0 chrIV 1220120 . G A 2844 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.6036;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.75;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2877,324,0 chrIV 1220150 . A G 3156 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.3343;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.38;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3189,360,0 chrIV 1220178 . A G 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=132;Dels=0.00;FS=6.072;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.620;QD=20.16;ReadPosRankSum=2.915;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:3,128:132:99:2694,303,0 chrIV 1220405 . C G 2454 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.28;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2487,282,0 chrIV 1220708 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.99;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3497,381,0 chrIV 1221065 . G A 2360 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.37;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2393,255,0 chrIV 1221481 . T C 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.3768;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.144;QD=21.80;ReadPosRankSum=1.186;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3618,395,0 chrIV 1221982 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8745;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.57;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3559,393,0 chrIV 1222049 . T C 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=4.060;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.691;QD=19.96;ReadPosRankSum=1.668;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3274,369,0 chrIV 1222054 . G C 3218.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.50;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3251,369,0 chrIV 1222135 . T C 3479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=6.648;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.719;QD=20.23;ReadPosRankSum=1.671;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3479,393,0 chrIV 1222183 . G T 2626 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=11.9459;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.24;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:2659,288,0 chrIV 1222965 . T C 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=140;Dels=0.00;FS=3.301;HaplotypeScore=11.1765;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.607;QD=22.84;ReadPosRankSum=1.657;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3230,363,0 chrIV 1223160 . T A 3754.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.54;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3754,417,0 chrIV 1223971 . C A 2123 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.0034;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.59;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2156,234,0 chrIV 1224090 . T C 1865 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.47;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1898,213,0 chrIV 1224109 . G T 1683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=4.243;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.102;QD=19.80;ReadPosRankSum=0.754;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1716,186,0 chrIV 1224118 . A G 1716 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.07;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1749,195,0 chrIV 1224397 . T C 1057 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1090,126,0 chrIV 1224490 . C T 876 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=15.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:55:99:909,99,0 chrIV 1224501 . C T 711 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=16.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:42:84:744,84,0 chrIV 1224509 . A G 636 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;MQRankSum=0.047;QD=17.19;ReadPosRankSum=1.639;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,36:37:78:669,78,0 chrIV 1224626 . G C 2528 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2561,294,0 chrIV 1224684 . G A 2144 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2177,246,0 chrIV 1224954 . T C 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=6.994;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.689;QD=21.59;ReadPosRankSum=2.405;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2386,279,0 chrIV 1225049 . A G 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=139;Dels=0.00;FS=2.991;HaplotypeScore=13.0944;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.787;QD=23.17;ReadPosRankSum=2.379;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3254,369,0 chrIV 1225292 . A G 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.248;QD=22.25;ReadPosRankSum=1.708;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,142:147:99:3271,384,0 chrIV 1225376 . A G 4188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=3.850;HaplotypeScore=11.3098;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.656;QD=22.89;ReadPosRankSum=1.694;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4188,477,0 chrIV 1225658 . G A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.2432;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3507,387,0 chrIV 1225730 . G A 4160.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.7421;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.64;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4160,465,0 chrIV 1226784 . C T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.2628;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3475,375,0 chrIV 1227316 . C T 4233.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.05;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4233,453,0 chrIV 1228284 . A G 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.738;DP=142;Dels=0.00;FS=5.406;HaplotypeScore=11.6634;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.731;QD=22.73;ReadPosRankSum=2.951;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3260,372,0 chrIV 1228404 . C T 2595 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2628,294,0 chrIV 1228721 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.1209;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.135;QD=22.81;ReadPosRankSum=1.710;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3535,402,0 chrIV 1228793 . C T 3185 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.5549;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.55;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3218,348,0 chrIV 1229236 . T G 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-1.144;QD=19.21;ReadPosRankSum=1.670;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2185,246,0 chrIV 1229313 . T C 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-1.160;QD=20.66;ReadPosRankSum=1.672;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2409,276,0 chrIV 1229336 . A G 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=4.346;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=1.019;QD=20.00;ReadPosRankSum=1.656;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2753,312,0 chrIV 1229391 . C T 3686.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.03;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3686,411,0 chrIV 1229404 . C T 4407.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.5834;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.48;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4407,477,0 chrIV 1229808 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.91;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3593,411,0 chrIV 1229833 . C T 4217.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.67;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4217,465,0 chrIV 1229881 . C G 3854.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.65;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3854,435,0 chrIV 1229935 . A C 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.655;DP=173;Dels=0.00;FS=10.566;HaplotypeScore=15.0784;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.023;QD=20.90;ReadPosRankSum=2.959;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:99:3616,414,0 chrIV 1230069 . C T 4099.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.2283;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.92;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:4099,447,0 chrIV 1230328 . G A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.01;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3889,444,0 chrIV 1230646 . A G 4694.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.8635;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.47;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4694,557,0 chrIV 1230859 . C T 5603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=257;Dels=0.00;FS=3.651;HaplotypeScore=15.0421;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.718;QD=21.80;ReadPosRankSum=1.651;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:5603,624,0 chrIV 1231036 . G A 4357.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.93;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4357,483,0 chrIV 1231118 . G A 4315.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.09;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4315,477,0 chrIV 1231256 . T C 2628 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2661,303,0 chrIV 1231627 . C A 2306 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2339,258,0 chrIV 1231692 . G A 2915 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0455;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.08;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2948,318,0 chrIV 1231776 . C T 4139.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=24.49;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4139,453,0 chrIV 1232017 . C T 4350.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.0602;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.43;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4350,471,0 chrIV 1232033 . T C 4201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=4.210;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-0.862;QD=20.49;ReadPosRankSum=1.715;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:4201,477,0 chrIV 1232389 . G A 3748.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.18;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3748,417,0 chrIV 1232436 . T C 4098.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.34;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4098,477,0 chrIV 1232773 . C T 3696.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3696,405,0 chrIV 1233187 . G A 2947 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.58;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2980,327,0 chrIV 1233488 . T C 3147 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.2706;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.80;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3180,363,0 chrIV 1233588 . C G 2243 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7933;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.16;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2276,258,0 chrIV 1233634 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.48;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2117,231,0 chrIV 1233840 . C T 2927 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.80;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2960,327,0 chrIV 1233967 . G A 2628 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.02;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2661,288,0 chrIV 1234295 . G C 3637.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.7266;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.55;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3637,417,0 chrIV 1234313 . T C 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=182;Dels=0.00;FS=2.932;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-2.166;QD=21.42;ReadPosRankSum=2.409;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3898,444,0 chrIV 1234571 . T C 5038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=15.6668;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.828;QD=21.81;ReadPosRankSum=1.717;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:1,229:231:99:5038,582,0 chrIV 1234664 . G A 3824.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3824,423,0 chrIV 1235279 . T C 3664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.9656;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=2.125;QD=22.90;ReadPosRankSum=1.831;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3664,420,0 chrIV 1235372 . G A 3207 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.93;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3240,351,0 chrIV 1235582 . G A 3799.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.09;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3799,414,0 chrIV 1235594 . A G 3529.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=20.05;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3529,402,0 chrIV 1235870 . T C 4226.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.72;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4226,483,0 chrIV 1236152 . C G 2438 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.96;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2471,285,0 chrIV 1236154 . G T 2459 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.02;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=22.56;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2492,267,0 chrIV 1236223 . A G 1488 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=87.1663;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;QD=14.59;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1521,177,0 chrIV 1236245 . A G 1289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=107;Dels=0.00;FS=4.731;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.21;MQ0=0;MQRankSum=-0.502;QD=12.05;ReadPosRankSum=1.635;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1322,153,0 chrIV 1236252 . C T 1271 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.02;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=39.53;MQ0=0;QD=11.88;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1304,141,0 chrIV 1236463 . C T 2405 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=22.90;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2438,261,0 chrIV 1237314 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=15.4330;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.66;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2863,327,0 chrIV 1237361 . T C 2828 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.35;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2861,321,0 chrIV 1237375 . G A 3038 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.84;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3071,327,0 chrIV 1237427 . A G 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=106;Dels=0.00;FS=3.049;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.316;QD=21.29;ReadPosRankSum=2.403;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:2,103:106:99:2290,261,0 chrIV 1237480 . G A 2254 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2287,249,0 chrIV 1237542 . A T 2306 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.77;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2339,255,0 chrIV 1237916 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.21;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2006,216,0 chrIV 1237947 . T A 1733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=6.368;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.799;QD=22.22;ReadPosRankSum=1.643;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1766,192,0 chrIV 1237959 . T A 1651 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.90;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1684,189,0 chrIV 1238041 . T A 1687 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1346;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1720,195,0 chrIV 1238153 . G A 2108 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.69;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2141,240,0 chrIV 1238230 . A G 2880 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.61;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2913,327,0 chrIV 1240137 . G A 2542 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2575,294,0 chrIV 1240314 . C T 3833.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3833,423,0 chrIV 1240548 . C T 4217.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.1146;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4217,468,0 chrIV 1241969 . A G 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=137;Dels=0.00;FS=2.690;HaplotypeScore=6.9056;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-1.157;QD=20.16;ReadPosRankSum=2.395;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:2,133:137:99:2795,321,0 chrIV 1242063 . T C 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=108;Dels=0.00;FS=6.126;HaplotypeScore=11.8215;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.243;QD=22.61;ReadPosRankSum=2.898;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2475,285,0 chrIV 1242168 . T C 1861 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=0.332;QD=18.80;ReadPosRankSum=1.627;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1894,222,0 chrIV 1242169 . A G 1861 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=18.25;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1894,219,0 chrIV 1242178 . T A 2175 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=-0.913;QD=19.59;ReadPosRankSum=1.669;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2208,240,0 chrIV 1242241 . T A 3166 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.45;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3199,351,0 chrIV 1242743 . A C 1707 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.40;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1740,201,0 chrIV 1242744 . G T 1755 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=20.17;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1788,201,0 chrIV 1244360 . T C 387 filter AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=9.04;MQ0=221;QD=1.29;SB=-6.653e-03 GT:AD:DP:GQ:PL 1/1:116,185:301:48:420,48,0 chrIV 1244367 . T C 364 filter AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=8.28;MQ0=234;QD=1.21;SB=-6.759e-03 GT:AD:DP:GQ:PL 1/1:124,175:301:45:397,45,0 chrIV 1244420 . C T 46.97 filter AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=3.07;MQ0=293;QD=0.16;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:166,134:301:9:79,9,0 chrIV 1245593 . T C 1880 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=24.57;MQ0=34;MQRankSum=-1.732;QD=16.64;ReadPosRankSum=1.688;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:1913,222,0 chrIV 1245635 . C T 1083 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.391;DP=126;Dels=0.00;FS=27.709;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=20.88;MQ0=65;MQRankSum=2.327;QD=8.60;ReadPosRankSum=-0.803;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:40,85:126:99:1116,126,0 chrIV 1245641 . A G 1063 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.215;DP=133;Dels=0.00;FS=27.996;HaplotypeScore=4.6980;MLEAC=2;MLEAF=1.00;MQ=20.65;MQ0=71;MQRankSum=2.291;QD=7.99;ReadPosRankSum=-1.175;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:42,91:133:99:1096,126,0 chrIV 1245795 . A T 3292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=164;Dels=0.00;FS=3.201;HaplotypeScore=14.7746;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=0.096;QD=20.07;ReadPosRankSum=1.583;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3292,366,0 chrIV 1246650 . T C 3298.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.28;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3298,378,0 chrIV 1246923 . T C 4082.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.01;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4082,453,0 chrIV 1247388 . T A 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=3.262;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=0.781;QD=22.34;ReadPosRankSum=1.708;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3205,357,0 chrIV 1247397 . A T 2983 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=22.77;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3016,324,0 chrIV 1247400 . C T 2889 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=21.09;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2922,324,0 chrIV 1247703 . T C 3856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=3.715;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.089;QD=23.09;ReadPosRankSum=1.711;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3856,450,0 chrIV 1248004 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=22.72;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2123,234,0 chrIV 1248024 . A G 2008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=94;Dels=0.00;FS=3.039;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.118;QD=21.36;ReadPosRankSum=2.266;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2041,228,0 chrIV 1248074 . C G 1229 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.0198;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=14.13;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,82:87:99:1262,144,0 chrIV 1248088 . G A 1457 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.0746;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=15.67;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1490,168,0 chrIV 1248128 . G A 2162 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.2146;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=19.48;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2195,249,0 chrIV 1248193 . A G 1850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=4.938;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=0.556;QD=17.45;ReadPosRankSum=1.634;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1883,222,0 chrIV 1248206 . C T 1699 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.8561;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=15.31;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1732,189,0 chrIV 1248222 . G A 2314 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.4442;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=16.77;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2347,249,0 chrIV 1248319 . G A 4134.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.2129;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.22;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4134,471,0 chrIV 1248513 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.38;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2234,252,0 chrIV 1248573 . A G 2622 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.85;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2655,297,0 chrIV 1248882 . T C 3714.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3714,423,0 chrIV 1248985 . C T 4423.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.34;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4423,477,0 chrIV 1249116 . T C 4280.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.8518;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.52;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4280,492,0 chrIV 1249231 . A G 4266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.1239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.035;QD=22.94;ReadPosRankSum=1.638;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4266,489,0 chrIV 1249356 . G A 3735.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.06;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3735,408,0 chrIV 1249551 . C T 4673.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.6458;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.37;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4673,516,0 chrIV 1249974 . T C 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.169;QD=22.73;ReadPosRankSum=1.710;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3683,414,0 chrIV 1250050 . C G 3185 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.91;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3218,360,0 chrIV 1250091 . T C 3024 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.3470;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.38;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3057,348,0 chrIV 1250153 . T C 4030.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.2691;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.51;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4030,456,0 chrIV 1250194 . T C 3750.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.06;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3750,423,0 chrIV 1250522 . T C 3967.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.06;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3967,444,0 chrIV 1250566 . A G 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.184;QD=22.18;ReadPosRankSum=1.710;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3548,399,0 chrIV 1251433 . C T 5364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=271;Dels=0.00;FS=3.091;HaplotypeScore=14.1479;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.403;QD=19.79;ReadPosRankSum=-0.518;SB=-3.385e+03 GT:AD:DP:GQ:PL 1/1:1,270:271:99:5364,581,0 chrIV 1251694 . T C 4172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=196;Dels=0.00;FS=3.869;HaplotypeScore=19.6012;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-1.572;QD=21.29;ReadPosRankSum=1.714;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4172,477,0 chrIV 1251752 . C T 4044.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.93;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4044,468,0 chrIV 1251914 . C T 4148.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=23.17;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4148,439,0 chrIV 1251937 . A G 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=186;Dels=0.00;FS=2.912;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=-0.378;QD=18.13;ReadPosRankSum=2.343;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:3372,384,0 chrIV 1251949 . C A 3504.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.25;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3504,393,0 chrIV 1252027 . G A 4178.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.79;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:4178,453,0 chrIV 1252116 . A G 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=139;Dels=0.00;FS=5.525;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.365;QD=21.97;ReadPosRankSum=2.905;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:3,135:139:99:3087,351,0 chrIV 1252245 . A G 389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.405;DP=120;Dels=0.00;FS=8.137;HaplotypeScore=104.3917;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.640;QD=3.24;ReadPosRankSum=-6.513;SB=-3.996e+00 GT:AD:DP:GQ:PL 1/1:98,22:120:48:422,48,0 chrIV 1252300 . A G 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=123;Dels=0.00;FS=10.146;HaplotypeScore=9.9972;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.976;QD=19.58;ReadPosRankSum=2.812;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2441,288,0 chrIV 1252563 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;QD=12.76;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:1730,189,0 chrIV 1252564 . T C 1662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;MQRankSum=-0.988;QD=12.31;ReadPosRankSum=1.501;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:1695,192,0 chrIV 1252635 . T C 2528 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.3533;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.15;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2561,294,0 chrIV 1253205 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=179;Dels=0.00;FS=5.002;HaplotypeScore=13.1633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.613;QD=20.99;ReadPosRankSum=1.712;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,173:179:99:3758,441,0 chrIV 1253314 . A G 5122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=9.5976;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-2.044;QD=21.89;ReadPosRankSum=1.927;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:2,228:234:99:5122,588,0 chrIV 1253334 . A G 5351.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.84;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5351,612,0 chrIV 1253397 . T C 5187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=242;Dels=0.00;FS=3.424;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=1.632;QD=21.43;ReadPosRankSum=1.718;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:5187,594,0 chrIV 1253664 . G A 2911 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=20.22;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2944,318,0 chrIV 1253679 . A G 2578 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=17.78;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2611,306,0 chrIV 1253694 . T C 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.024;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=1.070;QD=17.25;ReadPosRankSum=2.339;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:2706,296,0 chrIV 1253763 . A G 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.739;QD=21.24;ReadPosRankSum=1.688;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3356,393,0 chrIV 1253787 . A G 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.280;DP=147;Dels=0.00;FS=12.589;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.518;QD=20.88;ReadPosRankSum=3.352;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:4,143:147:99:3102,354,0 chrIV 1253876 . C T 2737 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=13.6036;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.43;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2770,306,0 chrIV 1254216 . G A 5954.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,249:253:99:5954,672,0 chrIV 1254337 . G A 4784.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.6971;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.57;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4784,525,0 chrIV 1254465 . A G 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.2698;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.893;QD=16.66;ReadPosRankSum=2.934;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:3,195:199:99:3316,381,0 chrIV 1254508 . C T 1618 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=12.74;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1651,186,0 chrIV 1254611 . A G 1519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=85;Dels=0.01;FS=2.609;HaplotypeScore=9.1763;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=-0.159;QD=17.87;ReadPosRankSum=2.916;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:3,80:84:99:1552,180,0 chrIV 1254620 . C T 1539 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=19.48;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1572,174,0 chrIV 1254714 . G A 1729 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.36;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1762,201,0 chrIV 1254735 . G A 1093 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=17.63;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1126,120,0 chrIV 1254750 . A G 835 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=16.06;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:868,99,0 chrIV 1254757 . A C 803 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=14.34;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:96:836,96,0 chrIV 1254809 . G A 1247 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=18.89;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1280,144,0 chrIV 1254831 . A G 1944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=3.280;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.772;QD=23.42;ReadPosRankSum=1.690;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1977,228,0 chrIV 1254866 . T A 2059 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=22.38;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2092,234,0 chrIV 1254881 . A G 2088 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=21.98;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2121,243,0 chrIV 1254929 . C T 1809 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.04;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1842,201,0 chrIV 1254967 . C T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=24.40;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3270,360,0 chrIV 1255067 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.08;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2926,315,0 chrIV 1255105 . A C 2220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.6420;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.661;QD=20.00;ReadPosRankSum=0.441;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2253,255,0 chrIV 1255110 . T C 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=118;Dels=0.00;FS=2.946;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-1.032;QD=19.83;ReadPosRankSum=2.408;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2373,267,0 chrIV 1255180 . A C 3692.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.1958;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.07;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3692,429,0 chrIV 1255294 . A G 3226.07 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=153;Dels=0.00;FS=3.069;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.053;QD=21.09;ReadPosRankSum=1.685;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:1,147:153:99:3259,372,0 chrIV 1255345 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.2894;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.85;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3265,357,0 chrIV 1255417 . G A 3482.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.4520;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=23.21;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3482,378,0 chrIV 1255457 . A G 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-1.034;QD=20.44;ReadPosRankSum=1.660;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2976,336,0 chrIV 1255467 . A G 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.722;QD=20.35;ReadPosRankSum=1.708;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2963,333,0 chrIV 1255633 . A G 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=169;Dels=0.00;FS=4.426;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=-1.261;QD=21.07;ReadPosRankSum=1.630;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3560,402,0 chrIV 1255639 . A G 3123 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=19.04;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3156,366,0 chrIV 1255666 . A G 2810 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=18.01;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2843,321,0 chrIV 1255684 . T G 2511 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=15.79;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:2544,291,0 chrIV 1255729 . A G 2707 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.66;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2740,321,0 chrIV 1256225 . C A 3143 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3176,363,0 chrIV 1256476 . G A 3954.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3954,441,0 chrIV 1256575 . C T 4225.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.6814;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.96;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4225,459,0 chrIV 1256608 . G A 4069.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.12;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4069,453,0 chrIV 1256650 . A G 3750.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.8682;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.55;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3750,420,0 chrIV 1256876 . T A 3606.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.2001;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.97;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3606,402,0 chrIV 1257111 . T C 2702 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.70;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2735,312,0 chrIV 1257139 . G A 2462 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=24.14;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2495,273,0 chrIV 1257206 . A T 1675 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;MQRankSum=-0.592;QD=20.94;ReadPosRankSum=1.688;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1708,189,0 chrIV 1257209 . C T 1617 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;QD=19.96;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1650,180,0 chrIV 1257215 . T C 1697 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=19.51;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1730,192,0 chrIV 1257287 . A G 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.149;QD=19.16;ReadPosRankSum=1.702;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2256,252,0 chrIV 1257343 . G A 2294 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.02;FS=0.000;HaplotypeScore=6.0771;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.05;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2327,252,0 chrIV 1257439 . G A 3343.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=21.03;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3343,381,0 chrIV 1257442 . G A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.9411;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=21.92;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3486,381,0 chrIV 1257459 . A C 2823 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4159;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=18.57;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2856,321,0 chrIV 1257873 . T C 5427.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.60;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5427,612,0 chrIV 1257905 . C G 4070.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.36;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,178:182:99:4070,456,0 chrIV 1258051 . G A 3466.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.26;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3466,387,0 chrIV 1258062 . T C 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=152;Dels=0.00;FS=4.260;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=0.593;QD=20.68;ReadPosRankSum=1.709;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3176,354,0 chrIV 1258096 . T A 2319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=3.624;HaplotypeScore=11.2717;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.282;QD=17.98;ReadPosRankSum=1.705;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2352,261,0 chrIV 1258657 . A G 4258.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.9645;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.02;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4258,480,0 chrIV 1258685 . T C 4588.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.6108;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.85;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4588,522,0 chrIV 1258968 . C T 5249.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.63;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5249,594,0 chrIV 1259352 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.56;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3407,375,0 chrIV 1259406 . A G 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.254;QD=21.22;ReadPosRankSum=1.710;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3332,378,0 chrIV 1259502 . T C 2927 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.47;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2960,342,0 chrIV 1259921 . G A 2645 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=24.05;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2678,294,0 chrIV 1259960 . A T 2265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=7.131;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=-1.796;QD=20.04;ReadPosRankSum=2.406;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2298,255,0 chrIV 1259970 . G C 2086 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=18.62;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2119,243,0 chrIV 1259982 . A G 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=116;Dels=0.00;FS=3.326;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;MQRankSum=-0.547;QD=16.34;ReadPosRankSum=1.702;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:1929,222,0 chrIV 1260015 . C A 2397 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;QD=16.53;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2430,261,0 chrIV 1260032 . T G 1979 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=14.14;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2012,234,0 chrIV 1260043 . G A 2154 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;QD=14.65;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:2187,243,0 chrIV 1260055 . A G 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=145;Dels=0.00;FS=2.767;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;MQRankSum=-0.597;QD=14.93;ReadPosRankSum=2.415;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,140:145:99:2198,255,0 chrIV 1260078 . G A 2602 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=17.01;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2635,288,0 chrIV 1260227 . G A 3278.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.2962;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=23.58;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3278,369,0 chrIV 1260353 . A G 2126 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=18.02;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2159,249,0 chrIV 1260356 . G A 2300 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=19.66;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2333,255,0 chrIV 1260365 . T C 2144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=126;Dels=0.00;FS=3.116;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=-1.039;QD=17.02;ReadPosRankSum=1.677;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2177,255,0 chrIV 1260605 . A G 3625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=172;Dels=0.00;FS=2.970;HaplotypeScore=9.0609;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=1.544;QD=21.08;ReadPosRankSum=2.335;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3625,417,0 chrIV 1260837 . C T 3115 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.5343;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.57;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3148,348,0 chrIV 1260996 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.2695;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.87;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3136,342,0 chrIV 1261060 . T C 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=6.107;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.410;QD=19.86;ReadPosRankSum=2.385;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3072,348,0 chrIV 1261076 . T C 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=3.128;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-1.016;QD=18.75;ReadPosRankSum=1.686;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:2865,339,0 chrIV 1261102 . A C 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=145;Dels=0.00;FS=6.006;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=1.076;QD=18.68;ReadPosRankSum=2.952;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:2741,315,0 chrIV 1261151 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.81;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3021,339,0 chrIV 1261386 . A G 3420.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.59;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3420,393,0 chrIV 1261418 . T A 3416.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.24;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3416,381,0 chrIV 1261452 . G A 3285.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3003;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.13;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3285,363,0 chrIV 1261713 . A G 2862 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2895,327,0 chrIV 1262181 . T A 4595.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=16.2469;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.09;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4595,516,0 chrIV 1262250 . G C 3800.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.9685;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.32;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3800,429,0 chrIV 1262292 . C T 4331.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4331,462,0 chrIV 1262394 . T C 4481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=204;Dels=0.00;FS=3.023;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.288;QD=21.97;ReadPosRankSum=2.413;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4481,522,0 chrIV 1262787 . C T 6063.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=18.2978;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.65;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:6063,666,0 chrIV 1263265 . T G 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.946;QD=22.60;ReadPosRankSum=1.711;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3729,420,0 chrIV 1263386 . T C 4296.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.73;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4296,489,0 chrIV 1263569 . C T 4500.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.3460;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.19;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4500,495,0 chrIV 1263594 . T C 3914.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.37;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3914,447,0 chrIV 1264065 . T A 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=4.363;HaplotypeScore=4.8653;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.707;QD=23.87;ReadPosRankSum=1.635;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3414,366,0 chrIV 1264122 . C T 2892 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.25;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2925,318,0 chrIV 1264265 . C T 2172 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.49;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2205,240,0 chrIV 1264283 . T C 1955 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.95;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1988,225,0 chrIV 1264448 . C T 2804 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.4609;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=22.25;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2837,312,0 chrIV 1264454 . C T 2571 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.6175;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=21.07;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2604,288,0 chrIV 1264743 . T C 3608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=170;Dels=0.00;FS=7.103;HaplotypeScore=7.4990;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.125;QD=21.22;ReadPosRankSum=2.347;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:3608,405,0 chrIV 1264751 . G A 3600.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=8.7734;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.82;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3600,396,0 chrIV 1264874 . T C 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=167;Dels=0.00;FS=6.880;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.290;QD=19.29;ReadPosRankSum=2.375;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:2,163:167:99:3255,372,0 chrIV 1264886 . T C 2761 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=17.47;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2794,327,0 chrIV 1264892 . C T 2697 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=17.18;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2730,306,0 chrIV 1264956 . T C 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=15.1349;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=0.888;QD=20.14;ReadPosRankSum=1.710;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3175,363,0 chrIV 1265205 . C T 3465.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.80;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3465,369,0 chrIV 1265426 . A G 3988.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3988,453,0 chrIV 1265705 . T C 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=128;Dels=0.00;FS=3.445;HaplotypeScore=16.2604;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.320;QD=19.99;ReadPosRankSum=1.705;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2592,306,0 chrIV 1265750 . G T 3125 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.50;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3158,339,0 chrIV 1265783 . C T 4026.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4026,435,0 chrIV 1265836 . C T 4170.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.27;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4170,468,0 chrIV 1265893 . C T 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.457;QD=22.47;ReadPosRankSum=0.577;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2887,324,0 chrIV 1265921 . G A 2832 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.21;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2865,309,0 chrIV 1265963 . A G 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=161;Dels=0.00;FS=2.977;HaplotypeScore=9.0648;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.191;QD=22.09;ReadPosRankSum=2.419;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3557,408,0 chrIV 1266381 . C A 2679 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6760;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.71;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2712,300,0 chrIV 1266546 . T C 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=143;Dels=0.00;FS=3.039;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-2.136;QD=19.76;ReadPosRankSum=2.397;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:2859,324,0 chrIV 1266570 . A G 3095 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.63;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3128,366,0 chrIV 1266600 . C T 3416.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.4386;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.33;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3416,384,0 chrIV 1266696 . G A 2988 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.92;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3021,339,0 chrIV 1266747 . A G 3484.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=22.33;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3484,411,0 chrIV 1266952 . C T 3407.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=19.5854;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.70;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3407,390,0 chrIV 1267101 . G A 2587 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2620,282,0 chrIV 1267212 . T A 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=124;Dels=0.00;FS=5.101;HaplotypeScore=9.8784;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-1.253;QD=20.47;ReadPosRankSum=1.676;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2571,282,0 chrIV 1267245 . C G 2556 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.48;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2589,297,0 chrIV 1267470 . G A 3401.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.1290;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.78;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3401,378,0 chrIV 1267740 . A G 4064.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.50;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4064,465,0 chrIV 1267782 . T A 3516.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.44;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3516,387,0 chrIV 1267783 . T C 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=3.967;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-1.430;QD=19.91;ReadPosRankSum=1.692;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3425,390,0 chrIV 1267924 . A G 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=170;Dels=0.00;FS=3.414;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.051;QD=20.15;ReadPosRankSum=1.712;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3425,393,0 chrIV 1267950 . T C 3642.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0356;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.42;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3642,417,0 chrIV 1267989 . A T 4218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=188;Dels=0.00;FS=7.470;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=1.367;QD=22.44;ReadPosRankSum=2.423;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4218,462,0 chrIV 1268019 . A C 3838.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.5752;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.06;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3838,438,0 chrIV 1268154 . T C 2810 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.51;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2843,333,0 chrIV 1268315 . T C 2008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=99;Dels=0.00;FS=5.141;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.919;QD=20.28;ReadPosRankSum=1.697;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2041,231,0 chrIV 1268647 . C A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.5194;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.45;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3423,372,0 chrIV 1269015 . T C 4941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.954;DP=238;Dels=0.00;FS=8.380;HaplotypeScore=11.6933;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.531;QD=20.76;ReadPosRankSum=0.624;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:4941,549,0 chrIV 1269057 . C T 5425.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.61;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5425,594,0 chrIV 1269182 . T C 6140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=262;Dels=0.00;FS=2.568;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.519;QD=23.44;ReadPosRankSum=2.965;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:3,258:262:99:6140,690,0 chrIV 1269318 . C T 4394.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.08;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4394,477,0 chrIV 1269577 . C T 1544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.016;DP=78;Dels=0.01;FS=3.061;HaplotypeScore=22.2702;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=1.553;QD=19.79;ReadPosRankSum=2.354;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1577,174,0 chrIV 1269611 . G C 1583 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.39;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1616,189,0 chrIV 1269708 . A C 1101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=63;Dels=0.00;FS=2.917;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.418;QD=17.48;ReadPosRankSum=2.371;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:2,60:63:99:1134,129,0 chrIV 1269832 . T A 1454 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.07;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1487,159,0 chrIV 1270009 . G A 2497 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.14;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2530,285,0 chrIV 1270156 . C T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.82;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3743,417,0 chrIV 1270259 . T C 4635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=218;Dels=0.00;FS=6.495;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.873;QD=21.26;ReadPosRankSum=2.291;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:4635,528,0 chrIV 1270566 . T C 4702.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.8613;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.28;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,206:211:99:4702,528,0 chrIV 1270706 . T C 5028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.9135;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.406;QD=23.94;ReadPosRankSum=0.141;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:5028,567,0 chrIV 1270902 . A G 4816.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.31;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4816,561,0 chrIV 1271022 . A G 4780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=212;Dels=0.00;FS=3.003;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.809;QD=22.55;ReadPosRankSum=2.368;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4780,537,0 chrIV 1271055 . A C 4685.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.6861;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.63;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4685,537,0 chrIV 1271410 . G A 4661.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=22.52;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4661,516,0 chrIV 1271521 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=184;Dels=0.00;FS=4.174;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.729;QD=22.07;ReadPosRankSum=1.713;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4060,459,0 chrIV 1271755 . G C 3002 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.6873;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.75;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3035,348,0 chrIV 1271941 . C T 2952 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.20;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2985,324,0 chrIV 1271999 . A G 3131 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3164,360,0 chrIV 1272164 . G A 2224 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=60.79;MQ0=0;QD=23.41;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2257,246,0 chrIV 1272483 . T A 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=135;Dels=0.00;FS=2.926;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.431;QD=23.09;ReadPosRankSum=2.395;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3150,348,0 chrIV 1272748 . T C 4037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.9575;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.421;QD=21.82;ReadPosRankSum=1.713;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4037,450,0 chrIV 1273219 . A T 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.910;QD=22.48;ReadPosRankSum=1.682;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3225,354,0 chrIV 1273337 . A G 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=127;Dels=0.00;FS=5.891;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.373;QD=23.31;ReadPosRankSum=2.913;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2994,339,0 chrIV 1274867 . A G 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=120;Dels=0.00;FS=3.121;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.801;QD=21.27;ReadPosRankSum=1.645;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2586,291,0 chrIV 1274988 . G A 2314 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.47;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2347,252,0 chrIV 1275068 . A G 1948 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=16.79;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1981,234,0 chrIV 1275069 . A G 1994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=115;Dels=0.00;FS=6.015;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.360;QD=17.34;ReadPosRankSum=2.939;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2027,231,0 chrIV 1276197 . C T 2545 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.52;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2578,294,0 chrIV 1276479 . A G 3081 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.17;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3114,357,0 chrIV 1276486 . A G 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=3.105;HaplotypeScore=3.5184;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-0.162;QD=21.93;ReadPosRankSum=1.707;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3081,351,0 chrIV 1276608 . A G 4124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=184;Dels=0.00;FS=3.058;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.142;QD=22.41;ReadPosRankSum=1.656;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:4124,468,0 chrIV 1276620 . G A 4199.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.72;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4199,453,0 chrIV 1276966 . G A 3469.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.55;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3469,387,0 chrIV 1277231 . C A 3227.04 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=14.6782;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.22;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3260,354,0 chrIV 1277282 . G T 3019 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.05;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3052,333,0 chrIV 1277377 . A T 3470.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.93;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3470,375,0 chrIV 1277473 . T C 2551 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.19;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2584,288,0 chrIV 1277676 . A G 5003.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.4170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5003,573,0 chrIV 1278468 . C T 4910.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=6.8899;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=21.73;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4910,564,0 chrIV 1278481 . C G 4554.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.51;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,216:222:99:4554,531,0 chrIV 1278613 . A C 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=3.632;HaplotypeScore=6.7086;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=1.293;QD=19.78;ReadPosRankSum=1.709;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3020,351,0 chrIV 1278630 . C T 3822.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.8810;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.30;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3822,408,0 chrIV 1279037 . A G 4265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=194;Dels=0.00;FS=5.495;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.194;QD=21.98;ReadPosRankSum=2.859;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:3,189:194:99:4265,489,0 chrIV 1279148 . A G 4503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=198;Dels=0.00;FS=5.864;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-1.066;QD=22.74;ReadPosRankSum=2.924;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:4503,513,0 chrIV 1279313 . G A 3388.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.2376;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.47;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3388,378,0 chrIV 1279416 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=113.5181;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;QD=16.39;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,145:150:99:2492,285,0 chrIV 1279680 . A C 3627.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.71;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3627,423,0 chrIV 1279875 . G A 5444.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=13.7383;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=24.86;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5444,586,0 chrIV 1280061 . T G 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=206;Dels=0.00;FS=3.906;HaplotypeScore=6.4962;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=1.172;QD=20.26;ReadPosRankSum=1.647;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:1,203:206:99:4174,492,0 chrIV 1280073 . G C 3934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=4.382;HaplotypeScore=4.8273;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.650;QD=20.38;ReadPosRankSum=-1.191;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:3934,447,0 chrIV 1280121 . G A 4729.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.8413;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.30;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4729,522,0 chrIV 1280529 . C G 3128 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.9244;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.34;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3161,354,0 chrIV 1280562 . T C 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=151;Dels=0.00;FS=3.035;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.334;QD=22.43;ReadPosRankSum=2.352;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3387,387,0 chrIV 1280606 . G A 3549.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.7422;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.82;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3549,381,0 chrIV 1280730 . C T 3467.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3467,378,0 chrIV 1281066 . G A 3772.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.34;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3772,417,0 chrIV 1281225 . A G 4405.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4405,519,0 chrIV 1281471 . A T 6051.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.27;SB=-3.353e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:6051,666,0 chrIV 1281774 . A G 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=150;Dels=0.00;FS=8.033;HaplotypeScore=12.4506;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.722;QD=22.47;ReadPosRankSum=2.383;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:3,146:150:99:3371,378,0 chrIV 1281813 . C T 3164 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.34;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3197,351,0 chrIV 1281842 . C T 3313.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.65;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3313,357,0 chrIV 1281900 . A C 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=164;Dels=0.00;FS=4.060;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.839;QD=22.88;ReadPosRankSum=1.668;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3753,435,0 chrIV 1281969 . G T 4398.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.28;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4398,486,0 chrIV 1282243 . C A 4092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=171;Dels=0.00;FS=3.414;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.138;QD=23.93;ReadPosRankSum=-0.297;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4092,426,0 chrIV 1282320 . T C 3497.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.95;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3497,405,0 chrIV 1282344 . T G 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.175;DP=146;Dels=0.00;FS=2.756;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.112;QD=21.24;ReadPosRankSum=2.364;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:2,141:146:99:3134,363,0 chrIV 1282929 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.70;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2871,318,0 chrIV 1283387 . T C 4883.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.51;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:4883,555,0 chrIV 1283592 . G A 4186.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.52;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4186,456,0 chrIV 1283634 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.96;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2946,336,0 chrIV 1283766 . G T 1919 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.86;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1952,225,0 chrIV 1283911 . C A 960 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=17.78;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:993,114,0 chrIV 1283930 . C A 989 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=19.02;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1022,111,0 chrIV 1283956 . A G 891 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=15.36;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:924,105,0 chrIV 1283961 . A C 861 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=14.59;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:894,102,0 chrIV 1283969 . C T 836 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=14.93;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:96:869,96,0 chrIV 1284111 . T A 2379 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.66;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2412,273,0 chrIV 1284296 . T C 2377 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=22.21;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2410,276,0 chrIV 1284600 . C T 2605 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2638,285,0 chrIV 1284927 . C T 3653.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.88;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3653,393,0 chrIV 1285035 . G A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.51;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3480,387,0 chrIV 1285104 . T C 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.643;DP=164;Dels=0.00;FS=4.337;HaplotypeScore=19.7669;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.101;QD=20.84;ReadPosRankSum=2.892;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:5,158:164:99:3418,399,0 chrIV 1285139 . A C 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=158;Dels=0.00;FS=3.239;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.688;QD=22.26;ReadPosRankSum=1.665;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3517,399,0 chrIV 1285416 . A G 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.184;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.607;QD=21.09;ReadPosRankSum=1.253;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2395,251,0 chrIV 1285752 . A T 2190 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.61;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2223,246,0 chrIV 1285791 . G A 2555 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2588,294,0 chrIV 1285878 . T C 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.503;QD=22.06;ReadPosRankSum=1.676;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2769,315,0 chrIV 1286096 . G A 4103.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.99;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4103,447,0 chrIV 1286166 . G A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.9057;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.17;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3529,378,0 chrIV 1286229 . G T 2979 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.4681;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.40;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3012,330,0 chrIV 1286246 . G A 2903 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.04;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2936,318,0 chrIV 1286517 . C A 2807 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.79;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2840,315,0 chrIV 1286595 . T C 2449 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.68;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2482,282,0 chrIV 1286766 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.3726;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2774,318,0 chrIV 1286913 . A G 4229.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=17.5289;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.03;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4229,474,0 chrIV 1286949 . A G 4144.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.36;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4144,474,0 chrIV 1287273 . G C 5399.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.97;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5399,615,0 chrIV 1287303 . G A 4817.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.6037;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.38;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4817,552,0 chrIV 1287842 . T C 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=189;Dels=0.00;FS=3.024;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.860;QD=20.79;ReadPosRankSum=2.397;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:2,185:189:99:3929,447,0 chrIV 1287951 . C A 4003.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4003,444,0 chrIV 1288090 . C T 3143 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.40;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3176,357,0 chrIV 1288265 . T C 5699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=248;Dels=0.00;FS=2.492;HaplotypeScore=18.5447;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.809;QD=22.98;ReadPosRankSum=2.947;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:4,244:248:99:5699,654,0 chrIV 1288413 . C T 5857.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=18.2753;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.38;SB=-3.391e+03 GT:AD:DP:GQ:PL 1/1:0,273:274:99:5857,639,0 chrIV 1289166 . T C 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.283;QD=22.17;ReadPosRankSum=1.708;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3204,360,0 chrIV 1289195 . G A 3066 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=9.2122;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.54;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3099,336,0 chrIV 1289759 . A C 4227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=180;Dels=0.00;FS=12.884;HaplotypeScore=11.3744;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.501;QD=23.48;ReadPosRankSum=2.422;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:2,177:180:99:4227,486,0 chrIV 1289885 . T A 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=178;Dels=0.00;FS=8.095;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.353;QD=20.41;ReadPosRankSum=2.339;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3633,396,0 chrIV 1289939 . A G 4145.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.93;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4145,471,0 chrIV 1289972 . C T 4664.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.17;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4664,504,0 chrIV 1290044 . A G 3932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3319;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.150;QD=22.73;ReadPosRankSum=1.672;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3932,447,0 chrIV 1290065 . T C 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=160;Dels=0.00;FS=6.331;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.650;QD=21.88;ReadPosRankSum=2.418;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:2,155:160:99:3500,402,0 chrIV 1290308 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.42;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3261,360,0 chrIV 1290722 . G A 4648.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4648,501,0 chrIV 1290886 . G A 2552 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2585,285,0 chrIV 1291009 . A G 203.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.734;DP=16;Dels=0.00;FS=14.819;HaplotypeScore=6.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.369;QD=12.69;ReadPosRankSum=2.100;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,12:16:27:236,27,0 chrIV 1291358 . G T 3441.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.8611;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.49;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3441,387,0 chrIV 1291654 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=168;Dels=0.00;FS=3.001;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.802;QD=20.57;ReadPosRankSum=2.332;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3456,402,0 chrIV 1291676 . C T 3738.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.3770;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.24;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3738,414,0 chrIV 1291853 . C A 3913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.155;QD=22.49;ReadPosRankSum=1.394;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3913,432,0 chrIV 1291869 . G C 3760.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.73;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3760,429,0 chrIV 1292120 . A G 2890 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.57;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2923,330,0 chrIV 1292138 . G A 2869 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=20.49;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2902,315,0 chrIV 1292153 . C T 2857 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=19.70;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2890,315,0 chrIV 1292261 . C G 2639 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=20.62;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2672,303,0 chrIV 1292274 . C T 2647 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.21;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2680,288,0 chrIV 1292344 . C T 2216 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.73;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2249,255,0 chrIV 1292398 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=14.5530;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.15;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3100,336,0 chrIV 1292515 . G C 3306.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.1658;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.28;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3306,381,0 chrIV 1292666 . A G 3518.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.84;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3518,408,0 chrIV 1293368 . G A 3397.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=17.4194;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.84;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,159:163:99:3397,381,0 chrIV 1293471 . T C 2545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.706;DP=120;Dels=0.00;FS=5.952;HaplotypeScore=11.4657;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.471;QD=21.21;ReadPosRankSum=2.152;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2578,275,0 chrIV 1293522 . C T 2498 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.83;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2531,288,0 chrIV 1293527 . G T 2573 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=20.42;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2606,285,0 chrIV 1293602 . C T 4101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.4412;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=0.237;QD=21.47;ReadPosRankSum=-0.784;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4101,440,0 chrIV 1293708 . G A 2834 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.31;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2867,324,0 chrIV 1293777 . A C 4491.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.51;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4491,507,0 chrIV 1293861 . A G 4976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=232;Dels=0.00;FS=13.495;HaplotypeScore=15.9218;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.680;QD=21.45;ReadPosRankSum=2.944;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:3,229:232:99:4976,584,0 chrIV 1293998 . C T 4778.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.75;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4778,516,0 chrIV 1294017 . G A 4844.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.15;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4844,522,0 chrIV 1294207 . T C 3378.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.52;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3378,390,0 chrIV 1294236 . G T 3028 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.78;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3061,348,0 chrIV 1294559 . T A 2454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.879;DP=130;Dels=0.00;FS=3.286;HaplotypeScore=1.9810;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.879;QD=18.88;ReadPosRankSum=1.359;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2487,252,0 chrIV 1294560 . T A 2496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=129;Dels=0.00;FS=3.324;HaplotypeScore=1.9810;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.873;QD=19.35;ReadPosRankSum=1.517;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2529,254,0 chrIV 1295031 . T A 4402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.8967;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.724;QD=22.57;ReadPosRankSum=1.677;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4402,483,0 chrIV 1295100 . A G 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.310;QD=20.26;ReadPosRankSum=1.709;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3112,354,0 chrIV 1295106 . T C 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=157;Dels=0.00;FS=3.267;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.849;QD=19.56;ReadPosRankSum=1.710;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3104,354,0 chrIV 1295438 . T C 2118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=4.973;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.472;QD=19.08;ReadPosRankSum=1.701;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2151,246,0 chrIV 1295450 . C T 1930 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=18.74;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1963,216,0 chrIV 1295451 . A G 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.781;QD=17.64;ReadPosRankSum=1.698;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:1850,213,0 chrIV 1295582 . T G 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.724;QD=23.53;ReadPosRankSum=1.701;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2645,300,0 chrIV 1295980 . C T 4022.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.39;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4022,435,0 chrIV 1296035 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.61;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3436,369,0 chrIV 1296045 . T A 3215 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.4814;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.74;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3248,354,0 chrIV 1296225 . C T 2688 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.9098;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.21;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2721,291,0 chrIV 1296244 . G A 2485 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.99;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2518,273,0 chrIV 1296358 . A G 3070 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.5669;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.09;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3103,351,0 chrIV 1296388 . A T 2938 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.43;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2971,330,0 chrIV 1296879 . C T 1314 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1347,150,0 chrIV 1297022 . G A 3362.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3362,378,0 chrIV 1297076 . T C 2927 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0809;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.34;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2960,333,0 chrIV 1297136 . G A 2874 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.45;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2907,333,0 chrIV 1297562 . G C 2735 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.7612;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.61;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2768,312,0 chrIV 1297645 . T C 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=125;Dels=0.00;FS=9.354;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.033;QD=18.90;ReadPosRankSum=2.927;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:3,121:125:99:2395,276,0 chrIV 1297796 . T G 4008.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.03;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4008,456,0 chrIV 1297890 . G A 3751.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.3908;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.15;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3751,411,0 chrIV 1297994 . G A 3862.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.70;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3862,441,0 chrIV 1298024 . T C 3357.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.38;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,151:157:99:3357,372,0 chrIV 1298054 . C T 3140 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.8520;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.22;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3173,345,0 chrIV 1298162 . A C 3596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=161;Dels=0.00;FS=2.781;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-1.198;QD=22.34;ReadPosRankSum=2.403;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:3596,405,0 chrIV 1298210 . A G 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=164;Dels=0.00;FS=3.037;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=1.001;QD=20.63;ReadPosRankSum=1.711;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:3384,387,0 chrIV 1298219 . T C 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=3.002;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=1.257;QD=19.78;ReadPosRankSum=2.335;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3403,384,0 chrIV 1298290 . A G 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=167;Dels=0.00;FS=6.205;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.478;QD=21.37;ReadPosRankSum=2.420;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3569,402,0 chrIV 1298337 . A G 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=137;Dels=0.00;FS=10.372;HaplotypeScore=15.0655;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.286;QD=21.85;ReadPosRankSum=2.918;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:3,132:137:99:3026,342,0 chrIV 1298424 . T A 4763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.8569;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-0.136;QD=23.23;ReadPosRankSum=1.647;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4763,519,0 chrIV 1298467 . A G 3982.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.52;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,181:185:99:3982,459,0 chrIV 1298594 . A C 4272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=1.140;QD=22.02;ReadPosRankSum=1.714;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4272,492,0 chrIV 1298614 . T C 4192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=202;Dels=0.00;FS=10.325;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.308;QD=20.75;ReadPosRankSum=2.916;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:3,199:202:99:4192,489,0 chrIV 1298688 . A G 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-1.475;QD=22.69;ReadPosRankSum=1.668;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3675,411,0 chrIV 1298829 . C A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=15.9716;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.74;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3616,390,0 chrIV 1298872 . T G 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=131;Dels=0.00;FS=3.391;HaplotypeScore=15.8278;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-1.283;QD=20.70;ReadPosRankSum=1.706;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2745,318,0 chrIV 1298950 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=159;Dels=0.00;FS=7.360;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-1.376;QD=20.30;ReadPosRankSum=2.418;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3261,372,0 chrIV 1298958 . C T 3473.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=21.44;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3473,375,0 chrIV 1299016 . T C 2829 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=19.11;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2862,324,0 chrIV 1299032 . A G 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-1.350;QD=19.15;ReadPosRankSum=1.678;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2465,285,0 chrIV 1299052 . T C 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=118;Dels=0.00;FS=3.447;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.437;QD=20.21;ReadPosRankSum=1.702;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,114:118:99:2418,276,0 chrIV 1299086 . T C 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=113;Dels=0.00;FS=4.181;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-1.354;QD=19.60;ReadPosRankSum=1.701;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,109:113:99:2248,255,0 chrIV 1299137 . T C 3056 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.08;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3089,354,0 chrIV 1299214 . A G 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.0449;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.137;QD=21.50;ReadPosRankSum=1.707;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3043,345,0 chrIV 1299259 . C T 2956 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.84;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2989,336,0 chrIV 1299598 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.0359;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3172,354,0 chrIV 1299658 . A C 3302.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.28;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3302,378,0 chrIV 1300045 . A C 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=129;Dels=0.00;FS=3.023;HaplotypeScore=15.6304;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.223;QD=21.57;ReadPosRankSum=2.392;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:2,125:129:99:2815,318,0 chrIV 1300146 . T C 2919 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=14.3265;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.62;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2952,342,0 chrIV 1300226 . T C 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.8412;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.481;QD=23.38;ReadPosRankSum=1.687;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3553,402,0 chrIV 1300388 . A G 4265.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.5106;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.69;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,184:188:99:4265,483,0 chrIV 1300456 . G A 4320.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4320,468,0 chrIV 1300582 . G A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.00;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3800,411,0 chrIV 1300834 . G A 2790 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.97;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,121:127:99:2823,321,0 chrIV 1300956 . C A 3740.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.8632;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.80;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3740,408,0 chrIV 1301095 . C T 3939.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3939,441,0 chrIV 1301230 . A G 4132.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.4020;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.31;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4132,468,0 chrIV 1301335 . G A 2937 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.3281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.68;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2970,342,0 chrIV 1301405 . A C 3098 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.5337;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.07;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3131,357,0 chrIV 1301442 . G A 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.597;QD=21.20;ReadPosRankSum=0.517;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,153:158:99:3349,372,0 chrIV 1301474 . C T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.90;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3964,438,0 chrIV 1302363 . C T 2611 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.93;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2644,288,0 chrIV 1302530 . T C 1920 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.01;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1953,228,0 chrIV 1302742 . C T 1908 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=19.47;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1941,222,0 chrIV 1302751 . T C 1946 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=19.86;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1979,225,0 chrIV 1302775 . A G 1623 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;QD=18.03;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1656,186,0 chrIV 1302786 . G A 1477 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;QD=17.58;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1510,171,0 chrIV 1302793 . C A 1568 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=17.82;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1601,177,0 chrIV 1302811 . G A 1403 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=17.11;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1436,159,0 chrIV 1302821 . C T 1334 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=0;QD=15.69;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1367,156,0 chrIV 1302868 . G A 1504 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.53;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1537,171,0 chrIV 1302894 . G A 2008 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.62;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2041,225,0 chrIV 1302919 . C A 2142 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.42;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2175,240,0 chrIV 1303028 . T C 2107 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.6794;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=20.86;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2140,246,0 chrIV 1303036 . A G 1943 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=21.12;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1976,231,0 chrIV 1303037 . A G 1956 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=21.73;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1989,225,0 chrIV 1303188 . T C 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.707;QD=19.00;ReadPosRankSum=1.650;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3244,369,0 chrIV 1303306 . T C 3957.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.14;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3957,447,0 chrIV 1303572 . G A 3547.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.70;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3547,384,0 chrIV 1303629 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.77;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3304,366,0 chrIV 1303713 . C T 3718.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3718,405,0 chrIV 1304192 . G A 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=120;Dels=0.00;FS=3.237;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.763;QD=21.90;ReadPosRankSum=0.029;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2661,288,0 chrIV 1304226 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.26;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3267,354,0 chrIV 1304580 . G A 2939 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2972,324,0 chrIV 1304682 . T C 3313.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3313,378,0 chrIV 1304837 . A G 2472 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2505,288,0 chrIV 1304961 . A G 2709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=132;Dels=0.00;FS=2.910;HaplotypeScore=11.5886;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=1.173;QD=20.52;ReadPosRankSum=2.356;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2742,309,0 chrIV 1305124 . A T 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=110;Dels=0.00;FS=3.171;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.197;QD=23.18;ReadPosRankSum=1.606;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2583,273,0 chrIV 1305228 . G A 2688 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2721,309,0 chrIV 1305302 . A G 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=126;Dels=0.00;FS=6.128;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.930;QD=22.75;ReadPosRankSum=2.370;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:2,121:126:99:2900,330,0 chrIV 1305372 . C T 2709 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.56;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2742,303,0 chrIV 1305496 . A G 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=121;Dels=0.00;FS=2.986;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.552;QD=21.75;ReadPosRankSum=2.387;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:2,116:121:99:2665,312,0 chrIV 1305532 . A G 2923 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.0160;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.84;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2956,336,0 chrIV 1305600 . T C 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=4.015;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.329;QD=23.42;ReadPosRankSum=1.703;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2867,324,0 chrIV 1305778 . T C 2021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.560;DP=96;Dels=0.02;FS=6.157;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.559;QD=21.05;ReadPosRankSum=2.925;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:3,91:94:99:2054,231,0 chrIV 1306195 . T G 2920 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.95;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2953,333,0 chrIV 1306390 . T A 5075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.455;QD=25.12;ReadPosRankSum=2.339;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:5075,555,0 chrIV 1306509 . G T 4539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=204;Dels=0.00;FS=3.969;HaplotypeScore=18.0190;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.995;QD=22.25;ReadPosRankSum=-0.257;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4539,501,0 chrIV 1306615 . C T 5598.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.9046;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.72;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5598,603,0 chrIV 1306661 . A C 4951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=230;Dels=0.00;FS=5.688;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.106;QD=21.53;ReadPosRankSum=2.969;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:3,226:230:99:4951,567,0 chrIV 1306774 . T A 3809.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=19.84;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3809,432,0 chrIV 1306792 . A T 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.944;DP=182;Dels=0.00;FS=10.547;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.642;QD=19.86;ReadPosRankSum=4.094;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:6,176:182:99:3614,390,0 chrIV 1306911 . C T 3576.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.84;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3576,390,0 chrIV 1306979 . A G 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=135;Dels=0.00;FS=3.076;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.293;QD=22.50;ReadPosRankSum=1.706;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3071,348,0 chrIV 1307338 . G A 4850.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.05;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4850,531,0 chrIV 1307587 . G A 9822.01 filter AC=2;AF=1.00;AN=2;DP=481;Dels=0.00;FS=0.000;HaplotypeScore=9.8843;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=20.42;SB=-2.986e+03 GT:AD:DP:GQ:PL 1/1:0,481:481:99:9822,1121,0 chrIV 1307627 . T C 7539.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.145;DP=702;Dels=0.00;FS=6.174;HaplotypeScore=31.2389;MLEAC=2;MLEAF=1.00;MQ=31.80;MQ0=0;MQRankSum=-3.009;QD=10.74;ReadPosRankSum=6.079;SB=-2.790e+03 GT:AD:DP:GQ:PL 1/1:13,685:702:99:7539,884,0 chrIV 1307631 . C T 6732.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=713;Dels=0.00;FS=0.000;HaplotypeScore=100.9413;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=9.44;SB=-3.335e+03 GT:AD:DP:GQ:PL 1/1:0,712:713:99:6732,773,0 chrIV 1307633 . T C 5073.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.263;DP=734;Dels=0.00;FS=12.259;HaplotypeScore=96.9962;MLEAC=1;MLEAF=0.500;MQ=31.36;MQ0=0;MQRankSum=-2.743;QD=6.91;ReadPosRankSum=10.416;SB=-2.241e+03 GT:AD:DP:GQ:PL 0/1:252,482:734:99:5073,0,501 chrIV 1307638 . G A 68.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.077;DP=838;Dels=0.00;FS=309.525;HaplotypeScore=234.2286;MLEAC=1;MLEAF=0.500;MQ=31.99;MQ0=0;MQRankSum=-4.200;QD=0.08;ReadPosRankSum=-9.528;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:688,146:838:98:98,0,6438 chrIV 1307646 . G A 5403.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=18.779;DP=948;DS;Dels=0.00;FS=116.930;HaplotypeScore=165.7336;MLEAC=1;MLEAF=0.500;MQ=33.30;MQ0=0;MQRankSum=-4.080;QD=5.70;ReadPosRankSum=-3.235;SB=-4.715e+03 GT:AD:DP:GQ:PL 0/1:410,529:948:99:5403,0,2722 chrIV 1307667 . G T 12475.01 filter AC=2;AF=1.00;AN=2;DP=951;DS;Dels=0.00;FS=0.000;HaplotypeScore=135.6637;MLEAC=2;MLEAF=1.00;MQ=35.67;MQ0=0;QD=13.12;SB=-9.029e+03 GT:AD:DP:GQ:PL 1/1:0,834:951:99:12475,1419,0 chrIV 1307715 . C T 17583.01 filter AC=2;AF=1.00;AN=2;DP=952;DS;Dels=0.00;FS=0.000;HaplotypeScore=76.3459;MLEAC=2;MLEAF=1.00;MQ=35.40;MQ0=15;QD=18.47;SB=-1.066e+04 GT:AD:DP:GQ:PL 1/1:0,950:952:99:17583,1968,0 chrIV 1307762 . C T 524.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;DP=751;DS;Dels=0.00;FS=6.373;HaplotypeScore=171.1952;MLEAC=1;MLEAF=0.500;MQ=28.35;MQ0=35;MQRankSum=4.368;QD=0.70;ReadPosRankSum=-4.010;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:631,110:751:99:554,0,5705 chrIV 1307776 . T C 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.495;DP=617;DS;Dels=0.00;FS=56.583;HaplotypeScore=65.8496;MLEAC=1;MLEAF=0.500;MQ=26.30;MQ0=24;MQRankSum=2.060;QD=0.06;ReadPosRankSum=-4.399;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:552,61:617:68:68,0,3955 chrIV 1307790 . A T 524.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;DP=477;DS;Dels=0.00;FS=57.493;HaplotypeScore=134.8332;MLEAC=1;MLEAF=0.500;MQ=22.96;MQ0=23;MQRankSum=4.259;QD=1.10;ReadPosRankSum=3.775;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:322,155:477:99:554,0,1675 chrIV 1307793 . G A,T 1900.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=8.204;DP=462;DS;Dels=0.00;FS=13.265;HaplotypeScore=74.9264;MLEAC=1,1;MLEAF=0.500,0.500;MQ=22.81;MQ0=23;MQRankSum=4.715;QD=4.11;ReadPosRankSum=4.691;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/2:63,203,196:462:99:1960,1153,1231,646,0,643 chrIV 1307796 . A T 882.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.197;DP=451;DS;Dels=0.00;FS=44.713;HaplotypeScore=161.9647;MLEAC=1;MLEAF=0.500;MQ=22.74;MQ0=24;MQRankSum=-1.020;QD=1.96;ReadPosRankSum=-5.003;SB=-9.100e+02 GT:AD:DP:GQ:PL 0/1:279,171:451:99:912,0,1016 chrIV 1307797 . C T 956.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.773;DP=451;DS;Dels=0.00;FS=44.936;HaplotypeScore=161.9647;MLEAC=1;MLEAF=0.500;MQ=22.66;MQ0=26;MQRankSum=-0.845;QD=2.12;ReadPosRankSum=-5.449;SB=-9.760e+02 GT:AD:DP:GQ:PL 0/1:279,171:451:99:986,0,1001 chrIV 1307801 . T C 712.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.390;DP=407;DS;Dels=0.00;FS=73.842;HaplotypeScore=55.5942;MLEAC=1;MLEAF=0.500;MQ=22.26;MQ0=26;MQRankSum=3.461;QD=1.75;ReadPosRankSum=11.154;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:211,195:407:99:742,0,994 chrIV 1307804 . C T 631.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.038;DP=378;DS;Dels=0.00;FS=37.229;HaplotypeScore=19.6605;MLEAC=1;MLEAF=0.500;MQ=22.16;MQ0=28;MQRankSum=-1.491;QD=1.67;ReadPosRankSum=-11.878;SB=-6.630e+02 GT:AD:DP:GQ:PL 0/1:231,146:378:99:661,0,858 chrIV 1307809 . T C 72.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.157;DP=256;DS;Dels=0.00;FS=39.761;HaplotypeScore=16.0219;MLEAC=1;MLEAF=0.500;MQ=22.01;MQ0=27;MQRankSum=-3.310;QD=0.28;ReadPosRankSum=-0.888;SB=-3.786e-03 GT:AD:DP:GQ:PL 0/1:226,30:256:99:102,0,863 chrIV 1307811 . C T 74.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.281;DP=256;DS;Dels=0.00;FS=40.065;HaplotypeScore=16.0219;MLEAC=1;MLEAF=0.500;MQ=22.01;MQ0=28;MQRankSum=-2.847;QD=0.29;ReadPosRankSum=-0.952;SB=-1.068e-03 GT:AD:DP:GQ:PL 0/1:226,30:256:99:104,0,824 chrIV 1307814 . G T 81.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.064;DP=243;DS;Dels=0.00;FS=44.062;HaplotypeScore=2.9782;MLEAC=1;MLEAF=0.500;MQ=21.93;MQ0=27;MQRankSum=-3.313;QD=0.33;ReadPosRankSum=-2.581;SB=1.18 GT:AD:DP:GQ:PL 0/1:202,30:243:99:111,0,768 chrIV 1307815 . A G 73.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.540;DP=243;DS;Dels=0.00;FS=40.356;HaplotypeScore=2.9782;MLEAC=1;MLEAF=0.500;MQ=21.93;MQ0=27;MQRankSum=-2.869;QD=0.30;ReadPosRankSum=-2.687;SB=-3.786e-03 GT:AD:DP:GQ:PL 0/1:213,30:243:99:103,0,836 chrIV 1307817 . G C 75.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.391;DP=237;DS;Dels=0.00;FS=39.840;HaplotypeScore=3.9676;MLEAC=1;MLEAF=0.500;MQ=21.80;MQ0=27;MQRankSum=-3.035;QD=0.32;ReadPosRankSum=-3.159;SB=2.117e-03 GT:AD:DP:GQ:PL 0/1:206,30:237:99:105,0,779 chrIV 1307820 . C T 78.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.627;DP=231;DS;Dels=0.00;FS=40.097;HaplotypeScore=3.9676;MLEAC=1;MLEAF=0.500;MQ=21.91;MQ0=24;MQRankSum=-3.182;QD=0.34;ReadPosRankSum=-3.519;SB=-1.068e-03 GT:AD:DP:GQ:PL 0/1:201,30:231:99:108,0,761 chrIV 1307821 . A G 76.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.534;DP=228;DS;Dels=0.00;FS=40.780;HaplotypeScore=3.9676;MLEAC=1;MLEAF=0.500;MQ=22.03;MQ0=23;MQRankSum=-2.996;QD=0.33;ReadPosRankSum=-3.626;SB=-2.189e-03 GT:AD:DP:GQ:PL 0/1:198,30:228:99:106,0,804 chrIV 1307832 . A T 616.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.110;DP=186;Dels=0.00;FS=22.714;HaplotypeScore=31.7575;MLEAC=1;MLEAF=0.500;MQ=21.53;MQ0=27;MQRankSum=3.967;QD=3.31;ReadPosRankSum=6.282;SB=0.128 GT:AD:DP:GQ:PL 0/1:61,125:186:99:646,0,113 chrIV 1307835 . G A 693 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.156;DP=161;Dels=0.00;FS=9.422;HaplotypeScore=32.9773;MLEAC=2;MLEAF=1.00;MQ=21.49;MQ0=28;MQRankSum=-0.089;QD=4.30;ReadPosRankSum=2.829;SB=-9.200e+01 GT:AD:DP:GQ:PL 1/1:11,137:161:67:726,67,0 chrIV 1307848 . A G 567.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.523;DP=240;Dels=0.00;FS=4.624;HaplotypeScore=61.7631;MLEAC=1;MLEAF=0.500;MQ=20.64;MQ0=29;MQRankSum=4.226;QD=2.36;ReadPosRankSum=-1.617;SB=-3.920e+02 GT:AD:DP:GQ:PL 0/1:171,64:240:99:597,0,328 chrIV 1307856 . A G 226.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.175;DP=321;Dels=0.00;FS=98.351;HaplotypeScore=67.6764;MLEAC=1;MLEAF=0.500;MQ=21.23;MQ0=30;MQRankSum=7.808;QD=0.70;ReadPosRankSum=-3.261;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:274,45:321:99:256,0,1055 chrIV 1307874 . A T 846.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.211;DP=556;Dels=0.00;FS=367.652;HaplotypeScore=297.5828;MLEAC=1;MLEAF=0.500;MQ=26.89;MQ0=37;MQRankSum=10.475;QD=1.52;ReadPosRankSum=-5.468;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:378,176:556:99:876,0,2118 chrIV 1307877 . G A 2913.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.736;DP=603;Dels=0.00;FS=440.546;HaplotypeScore=313.1705;MLEAC=1;MLEAF=0.500;MQ=26.91;MQ0=39;MQRankSum=13.360;QD=4.83;ReadPosRankSum=-7.814;SB=-8.070e+02 GT:AD:DP:GQ:PL 0/1:213,370:603:99:2943,0,297 chrIV 1307879 . C T 356.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;DP=641;Dels=0.00;FS=225.097;HaplotypeScore=331.4075;MLEAC=1;MLEAF=0.500;MQ=27.04;MQ0=45;MQRankSum=5.358;QD=0.56;ReadPosRankSum=-5.053;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:514,126:641:99:386,0,3010 chrIV 1307885 . T C 2346.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-14.343;DP=838;Dels=0.00;FS=81.141;HaplotypeScore=400.4463;MLEAC=1;MLEAF=0.500;MQ=27.47;MQ0=52;MQRankSum=8.199;QD=2.80;ReadPosRankSum=0.445;SB=-8.780e+02 GT:AD:DP:GQ:PL 0/1:482,355:838:99:2376,0,1885 chrIV 1307916 . A T 3756.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;DP=995;DS;Dels=0.00;FS=16.145;HaplotypeScore=58.6033;MLEAC=1;MLEAF=0.500;MQ=26.75;MQ0=69;MQRankSum=2.708;QD=3.77;ReadPosRankSum=4.762;SB=-1.547e+03 GT:AD:DP:GQ:PL 0/1:353,638:995:99:3756,0,1388 chrIV 1307930 . C T 954.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;DP=989;DS;Dels=0.00;FS=169.355;HaplotypeScore=299.7260;MLEAC=1;MLEAF=0.500;MQ=27.50;MQ0=56;MQRankSum=5.731;QD=0.96;ReadPosRankSum=3.297;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:773,210:989:99:984,0,4731 chrIV 1307932 . A G 928.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-16.424;DP=986;DS;Dels=0.00;FS=573.084;HaplotypeScore=297.3788;MLEAC=1;MLEAF=0.500;MQ=27.69;MQ0=56;MQRankSum=-7.074;QD=0.94;ReadPosRankSum=-7.614;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:773,212:986:99:958,0,4915 chrIV 1307940 . A G 499.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.057;DP=951;DS;Dels=0.00;FS=342.096;HaplotypeScore=259.9988;MLEAC=1;MLEAF=0.500;MQ=28.04;MQ0=55;MQRankSum=-4.069;QD=0.52;ReadPosRankSum=-7.917;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:814,135:951:99:529,0,5242 chrIV 1307944 . T C 1366.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.698;DP=911;DS;Dels=0.00;FS=63.249;HaplotypeScore=126.7467;MLEAC=1;MLEAF=0.500;MQ=28.26;MQ0=55;MQRankSum=3.657;QD=1.50;ReadPosRankSum=2.245;SB=-1.830e+02 GT:AD:DP:GQ:PL 0/1:672,239:911:99:1396,0,4173 chrIV 1307982 . G A 1144.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;DP=431;DS;Dels=0.00;FS=0.545;HaplotypeScore=87.7081;MLEAC=1;MLEAF=0.500;MQ=25.55;MQ0=41;MQRankSum=2.061;QD=2.65;ReadPosRankSum=3.755;SB=-3.640e+02 GT:AD:DP:GQ:PL 0/1:295,131:431:99:1174,0,1510 chrIV 1308003 . A T 1045.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.141;DP=451;DS;Dels=0.00;FS=118.740;HaplotypeScore=334.2813;MLEAC=1;MLEAF=0.500;MQ=29.34;MQ0=13;MQRankSum=4.503;QD=2.32;ReadPosRankSum=3.635;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:165,157:451:99:1075,0,1139 chrIV 1308005 . C T 549.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.581;DP=444;DS;Dels=0.00;FS=7.500;HaplotypeScore=305.3843;MLEAC=1;MLEAF=0.500;MQ=29.08;MQ0=12;MQRankSum=4.891;QD=1.24;ReadPosRankSum=2.665;SB=-2.990e+02 GT:AD:DP:GQ:PL 0/1:340,94:444:99:579,0,1978 chrIV 1308006 . A T 970.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.389;DP=431;DS;Dels=0.00;FS=66.059;HaplotypeScore=297.6611;MLEAC=1;MLEAF=0.500;MQ=29.23;MQ0=12;MQRankSum=5.250;QD=2.25;ReadPosRankSum=-0.100;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:277,144:431:99:1000,0,1622 chrIV 1308007 . C T 916.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.866;DP=444;DS;Dels=0.00;FS=46.058;HaplotypeScore=294.4446;MLEAC=1;MLEAF=0.500;MQ=29.16;MQ0=11;MQRankSum=5.519;QD=2.06;ReadPosRankSum=0.331;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:302,140:444:99:946,0,1709 chrIV 1308016 . A G 2109 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.931;DP=301;DS;Dels=0.00;FS=10.839;HaplotypeScore=54.7584;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=5;MQRankSum=-1.828;QD=7.01;ReadPosRankSum=4.544;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:19,281:301:99:2142,272,0 chrIV 1308024 . A G 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.853;DP=274;Dels=0.00;FS=74.414;HaplotypeScore=30.0094;MLEAC=1;MLEAF=0.500;MQ=30.27;MQ0=9;MQRankSum=-0.788;QD=0.46;ReadPosRankSum=-6.750;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:225,22:274:99:156,0,1088 chrIV 1308045 . G A 1537 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.736;DP=358;Dels=0.00;FS=4.306;HaplotypeScore=15.5015;MLEAC=2;MLEAF=1.00;MQ=25.87;MQ0=54;MQRankSum=0.975;QD=4.29;ReadPosRankSum=3.267;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:25,332:358:99:1570,179,0 chrIV 1308084 . A T 674.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.876;DP=378;Dels=0.00;FS=104.963;HaplotypeScore=91.1010;MLEAC=1;MLEAF=0.500;MQ=18.62;MQ0=75;MQRankSum=2.830;QD=1.78;ReadPosRankSum=-7.165;SB=-4.070e+02 GT:AD:DP:GQ:PL 0/1:216,162:378:99:704,0,528 chrIV 1308100 . A G 61.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.951;DP=289;Dels=0.00;FS=102.941;HaplotypeScore=45.1197;MLEAC=1;MLEAF=0.500;MQ=13.91;MQ0=81;MQRankSum=0.737;QD=0.21;ReadPosRankSum=-5.797;SB=-1.821e+00 GT:AD:DP:GQ:PL 0/1:245,44:289:91:91,0,687 chrIV 1308135 . C T 523 filter AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=14.68;MQ0=40;QD=3.87;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,134:135:69:556,69,0 chrIV 1308153 . G A 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.510;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=50.4944;MLEAC=1;MLEAF=0.500;MQ=12.07;MQ0=37;MQRankSum=-1.958;QD=0.65;ReadPosRankSum=-1.726;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,27:89:72:88,0,72 chrIV 1308163 . T C 55.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.527;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=76.7970;MLEAC=1;MLEAF=0.500;MQ=12.31;MQ0=37;MQRankSum=-1.536;QD=0.56;ReadPosRankSum=-4.014;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:76,23:99:67:85,0,67 chrIV 1308173 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.299;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=23.9125;MLEAC=2;MLEAF=1.00;MQ=10.39;MQ0=32;MQRankSum=0.779;QD=0.20;ReadPosRankSum=-2.916;SB=1.24 GT:AD:DP:GQ:PL 1/1:56,5:61:6:43,6,0 chrIV 1308219 . C T 91.26 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=10.75;MQ0=35;QD=1.76;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:15:124,15,0 chrIV 1308238 . T C 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.677;DP=67;Dels=0.00;FS=57.926;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.98;MQ0=35;MQRankSum=0.283;QD=0.45;ReadPosRankSum=-3.750;SB=0.782 GT:AD:DP:GQ:PL 0/1:51,16:67:60:60,0,92 chrIV 1308255 . A G 91.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.218;DP=76;Dels=0.00;FS=79.062;HaplotypeScore=10.3801;MLEAC=1;MLEAF=0.500;MQ=14.29;MQ0=37;MQRankSum=1.020;QD=1.20;ReadPosRankSum=-2.557;SB=-2.804e+00 GT:AD:DP:GQ:PL 0/1:52,24:76:88:121,0,88 chrIV 1308263 . C T 91.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.617;DP=77;Dels=0.00;FS=79.062;HaplotypeScore=15.3742;MLEAC=1;MLEAF=0.500;MQ=14.15;MQ0=39;MQRankSum=0.843;QD=1.18;ReadPosRankSum=0.281;SB=-2.804e+00 GT:AD:DP:GQ:PL 0/1:51,26:77:87:121,0,87 chrIV 1308266 . C T 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;DP=78;Dels=0.00;FS=29.635;HaplotypeScore=16.2064;MLEAC=1;MLEAF=0.500;MQ=14.06;MQ0=40;MQRankSum=2.342;QD=0.17;ReadPosRankSum=-0.620;SB=0.782 GT:AD:DP:GQ:PL 0/1:69,8:78:43:43,0,164 chrIV 1308268 . A G 134.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.030;DP=79;Dels=0.00;FS=74.735;HaplotypeScore=15.2330;MLEAC=1;MLEAF=0.500;MQ=13.97;MQ0=41;MQRankSum=0.016;QD=1.70;ReadPosRankSum=2.936;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:35,43:79:47:164,0,47 chrIV 1308280 . T C 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.379;DP=77;Dels=0.00;FS=26.776;HaplotypeScore=4.1894;MLEAC=1;MLEAF=0.500;MQ=14.11;MQ0=41;MQRankSum=3.065;QD=0.14;ReadPosRankSum=-2.013;SB=0.782 GT:AD:DP:GQ:PL 0/1:71,6:77:40:40,0,164 chrIV 1308303 . C T 283 filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.49;MQ0=66;QD=2.83;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,100:100:39:316,39,0 chrIV 1308336 . A T 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;DP=98;Dels=0.00;FS=5.477;HaplotypeScore=6.7117;MLEAC=1;MLEAF=0.500;MQ=12.79;MQ0=69;MQRankSum=1.404;QD=0.14;ReadPosRankSum=-0.343;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,22:98:44:44,0,133 chrIV 1308350 . C T 80.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;DP=115;Dels=0.00;FS=39.478;HaplotypeScore=21.0299;MLEAC=1;MLEAF=0.500;MQ=14.79;MQ0=70;MQRankSum=-0.457;QD=0.70;ReadPosRankSum=0.082;SB=-8.656e-03 GT:AD:DP:GQ:PL 0/1:73,40:115:30:110,0,30 chrIV 1308364 . T C 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;DP=137;Dels=0.00;FS=13.403;HaplotypeScore=44.0757;MLEAC=1;MLEAF=0.500;MQ=20.07;MQ0=55;MQRankSum=-3.550;QD=0.08;ReadPosRankSum=6.188;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,42:137:40:40,0,240 chrIV 1308378 . A T 217.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.423;DP=154;Dels=0.00;FS=11.437;HaplotypeScore=66.5386;MLEAC=1;MLEAF=0.500;MQ=24.27;MQ0=31;MQRankSum=4.075;QD=1.41;ReadPosRankSum=-4.446;SB=-9.901e+01 GT:AD:DP:GQ:PL 0/1:87,67:154:99:247,0,315 chrIV 1308381 . G A 472.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.175;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=61.1852;MLEAC=1;MLEAF=0.500;MQ=25.52;MQ0=17;MQRankSum=3.448;QD=3.42;ReadPosRankSum=-5.463;SB=-2.020e-02 GT:AD:DP:GQ:PL 0/1:38,85:138:22:502,0,22 chrIV 1308383 . C T 133.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.372;DP=135;Dels=0.00;FS=4.653;HaplotypeScore=62.0195;MLEAC=1;MLEAF=0.500;MQ=25.72;MQ0=15;MQRankSum=1.906;QD=0.99;ReadPosRankSum=-1.053;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,25:135:99:163,0,373 chrIV 1308387 . C T 666 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=58.3870;MLEAC=2;MLEAF=1.00;MQ=27.06;MQ0=4;QD=5.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,119:119:78:699,78,0 chrIV 1308389 . T C 226.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.702;DP=120;Dels=0.00;FS=3.241;HaplotypeScore=60.1641;MLEAC=1;MLEAF=0.500;MQ=27.03;MQ0=4;MQRankSum=3.207;QD=1.88;ReadPosRankSum=-2.748;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,61:120:99:256,0,274 chrIV 1308420 . A T 454.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.766;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=18.3573;MLEAC=1;MLEAF=0.500;MQ=26.27;MQ0=8;MQRankSum=6.000;QD=3.17;ReadPosRankSum=8.772;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,95:143:99:484,0,470 chrIV 1308434 . C T 456.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.489;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=43.5036;MLEAC=1;MLEAF=0.500;MQ=26.50;MQ0=7;MQRankSum=-6.378;QD=3.48;ReadPosRankSum=3.652;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,26:131:99:486,0,458 chrIV 1308436 . A G 98.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.983;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=30.5710;MLEAC=1;MLEAF=0.500;MQ=26.75;MQ0=6;MQRankSum=1.024;QD=0.78;ReadPosRankSum=-2.508;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,34:125:99:128,0,887 chrIV 1308444 . A G 80.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.409;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=48.0267;MLEAC=1;MLEAF=0.500;MQ=26.90;MQ0=6;MQRankSum=3.155;QD=0.70;ReadPosRankSum=-2.004;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,27:115:99:110,0,830 chrIV 1308448 . T C 437.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.936;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=23.5540;MLEAC=1;MLEAF=0.500;MQ=26.78;MQ0=6;MQRankSum=-6.895;QD=4.01;ReadPosRankSum=7.260;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,26:109:99:467,0,412 chrIV 1308462 . A T 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.830;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1434;MLEAC=1;MLEAF=0.500;MQ=25.87;MQ0=6;MQRankSum=3.203;QD=0.26;ReadPosRankSum=-0.993;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,18:73:49:49,0,671 chrIV 1308471 . C T 810 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.8184;MLEAC=2;MLEAF=1.00;MQ=24.24;MQ0=4;QD=13.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:96:843,96,0 chrIV 1308473 . T C 93.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.742;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8184;MLEAC=1;MLEAF=0.500;MQ=24.27;MQ0=8;MQRankSum=1.462;QD=1.24;ReadPosRankSum=1.515;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,23:75:99:123,0,500 chrIV 1308486 . G A 278.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.507;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.8262;MLEAC=1;MLEAF=0.500;MQ=21.39;MQ0=47;MQRankSum=-3.159;QD=1.82;ReadPosRankSum=-0.911;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,21:153:99:308,0,752 chrIV 1308504 . A T 2344 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.332;DP=285;Dels=0.00;FS=8.804;HaplotypeScore=43.8180;MLEAC=2;MLEAF=1.00;MQ=22.77;MQ0=110;MQRankSum=1.982;QD=8.22;ReadPosRankSum=3.161;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:58,227:285:99:2377,146,0 chrIV 1308573 . G A 5499.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.971;DP=463;Dels=0.00;FS=27.952;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=35.73;MQ0=99;MQRankSum=5.527;QD=11.88;ReadPosRankSum=2.169;SB=-1.656e+03 GT:AD:DP:GQ:PL 0/1:135,328:463:99:5499,0,118 chrIV 1308583 . T C 4762.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729;DP=427;Dels=0.00;FS=27.737;HaplotypeScore=7.4869;MLEAC=1;MLEAF=0.500;MQ=37.40;MQ0=60;MQRankSum=5.412;QD=11.15;ReadPosRankSum=5.287;SB=-1.591e+03 GT:AD:DP:GQ:PL 0/1:105,321:427:99:4762,0,201 chrIV 1308589 . T C 4371.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.469;DP=387;Dels=0.00;FS=30.225;HaplotypeScore=12.6622;MLEAC=1;MLEAF=0.500;MQ=39.08;MQ0=35;MQRankSum=5.912;QD=11.29;ReadPosRankSum=7.684;SB=-1.596e+03 GT:AD:DP:GQ:PL 0/1:80,306:387:99:4371,0,263 chrIV 1308591 . G T 214.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.292;DP=368;Dels=0.00;FS=28.309;HaplotypeScore=14.6426;MLEAC=1;MLEAF=0.500;MQ=39.91;MQ0=24;MQRankSum=-5.738;QD=0.58;ReadPosRankSum=-8.170;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:301,67:368:99:244,0,4130 chrIV 1308631 . T C 1798 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.2918;MLEAC=2;MLEAF=1.00;MQ=31.62;MQ0=0;QD=8.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,192:201:99:1831,213,0 chrIV 1308635 . A G 1282 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=135;Dels=0.00;FS=39.564;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=0;MQRankSum=2.413;QD=9.50;ReadPosRankSum=2.359;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:1315,150,0 chrIV 1308636 . T G 1174 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1207,138,0 chrIV 1308637 . A G 1180 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1213,138,0 chrIV 1308640 . G A 1032 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.516;DP=131;Dels=0.00;FS=21.173;HaplotypeScore=3.8936;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;MQRankSum=1.706;QD=7.88;ReadPosRankSum=1.706;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:1065,129,0 chrIV 1308641 . T C 1145 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.172;DP=133;Dels=0.00;FS=15.234;HaplotypeScore=4.6823;MLEAC=2;MLEAF=1.00;MQ=29.28;MQ0=0;MQRankSum=-0.009;QD=8.61;ReadPosRankSum=2.376;SB=-2.101e+01 GT:AD:DP:GQ:PL 1/1:2,131:133:99:1178,138,0 chrIV 1308642 . T C 1139 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=15.267;HaplotypeScore=5.4709;MLEAC=2;MLEAF=1.00;MQ=29.63;MQ0=0;MQRankSum=-0.009;QD=8.50;ReadPosRankSum=2.376;SB=-2.001e+01 GT:AD:DP:GQ:PL 1/1:2,132:134:99:1172,138,0 chrIV 1308644 . A C 1234 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=0;QD=8.63;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,140:143:99:1267,144,0 chrIV 1308678 . T C 3659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=333;Dels=0.02;FS=6.001;HaplotypeScore=12.8653;MLEAC=2;MLEAF=1.00;MQ=37.86;MQ0=0;MQRankSum=-1.951;QD=10.99;ReadPosRankSum=2.966;SB=-3.957e+03 GT:AD:DP:GQ:PL 1/1:3,323:326:99:3659,420,0 chrIV 1308746 . T C 7070.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=417;Dels=0.00;FS=4.277;HaplotypeScore=25.8644;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;MQRankSum=-1.415;QD=16.95;ReadPosRankSum=1.715;SB=-3.777e+03 GT:AD:DP:GQ:PL 1/1:1,414:417:99:7070,807,0 chrIV 1308951 . C G 4445.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.68;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,201:205:99:4445,507,0 chrIV 1309104 . C G 2830 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.36;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2863,336,0 chrIV 1309251 . C T 2971 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.37;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3004,339,0 chrIV 1309349 . T C 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.677;DP=128;Dels=0.00;FS=6.095;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.496;QD=20.67;ReadPosRankSum=2.866;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:2679,309,0 chrIV 1309390 . T C 3426.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.28;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3426,390,0 chrIV 1309424 . G A 3534.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.10;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3534,381,0 chrIV 1309473 . A G 3073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=144;Dels=0.00;FS=7.098;HaplotypeScore=14.2814;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.078;QD=21.34;ReadPosRankSum=2.415;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:2,140:144:99:3106,354,0 chrIV 1309512 . C T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.58;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3513,393,0 chrIV 1309620 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.45;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3082,333,0 chrIV 1309649 . G C 2914 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.24;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2947,336,0 chrIV 1309698 . C T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.63;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3553,396,0 chrIV 1309772 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=175;Dels=0.00;FS=4.105;HaplotypeScore=15.0657;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.257;QD=21.85;ReadPosRankSum=1.712;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3824,429,0 chrIV 1309907 . C G 3654.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.37;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3654,414,0 chrIV 1310168 . G A 3397.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8403;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.80;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3397,369,0 chrIV 1310395 . G A 2806 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=19.0772;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.96;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2839,318,0 chrIV 1310837 . G A 2335 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.62;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2368,255,0 chrIV 1310896 . G A 2601 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.81;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2634,303,0 chrIV 1311671 . T C 3182 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3215,372,0 chrIV 1311768 . T C 1899 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.10;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1932,222,0 chrIV 1311784 . C T 1839 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.4499;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.77;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1872,204,0 chrIV 1311941 . A G 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=151;Dels=0.00;FS=5.397;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.407;QD=23.28;ReadPosRankSum=1.662;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3516,390,0 chrIV 1311986 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.71;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3316,384,0 chrIV 1312036 . C T 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=150;Dels=0.00;FS=10.526;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=0.483;QD=22.67;ReadPosRankSum=2.220;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3400,375,0 chrIV 1312038 . C T 3492.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=23.13;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3492,378,0 chrIV 1312058 . C T 3933.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8932;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=23.27;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3933,423,0 chrIV 1312234 . A T 5111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-0.643;QD=24.34;ReadPosRankSum=1.716;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:5111,573,0 chrIV 1312268 . G A 5141.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.65;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:5141,579,0 chrIV 1312280 . C T 5540.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=24.19;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5540,597,0 chrIV 1312365 . T C 2992 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=19.81;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3025,345,0 chrIV 1312371 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.69;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3136,339,0 chrIV 1312462 . A C 4214.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=21.95;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4214,483,0 chrIV 1312501 . G C 3430.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=21.17;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3430,393,0 chrIV 1312526 . A G 3440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=166;Dels=0.00;FS=6.061;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.616;QD=20.72;ReadPosRankSum=2.958;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:3,162:166:99:3440,387,0 chrIV 1312613 . G A 2975 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.37;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3008,330,0 chrIV 1312700 . C A 2398 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7687;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.60;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2431,273,0 chrIV 1312729 . T A 2587 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.4617;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.92;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2620,282,0 chrIV 1312785 . C T 2475 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.64;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2508,291,0 chrIV 1313044 . C T 4727.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.1226;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.78;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4727,525,0 chrIV 1313459 . A G 2038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.270;QD=22.64;ReadPosRankSum=1.694;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2071,231,0 chrIV 1313549 . T C 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=3.596;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.194;QD=23.60;ReadPosRankSum=1.698;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2464,276,0 chrIV 1313591 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.7076;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.09;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2659,291,0 chrIV 1313870 . C T 4939.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.19;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4939,531,0 chrIV 1314007 . A G 4538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=196;Dels=0.00;FS=10.973;HaplotypeScore=15.3481;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.103;QD=23.15;ReadPosRankSum=2.964;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:4538,510,0 chrIV 1314244 . T C 3309.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.55;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3309,381,0 chrIV 1314298 . G A 3705.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.79;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3705,420,0 chrIV 1314441 . G A 2862 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.1106;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.36;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2895,318,0 chrIV 1314697 . G A 4796.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.59;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4796,525,0 chrIV 1314742 . T C 4345.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.30;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4345,507,0 chrIV 1314814 . A G 4613.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.2893;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.18;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4613,519,0 chrIV 1314845 . A G 4348.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.52;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4348,492,0 chrIV 1314849 . T C 4173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=209;Dels=0.00;FS=7.249;HaplotypeScore=4.2179;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.041;QD=19.97;ReadPosRankSum=2.297;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4173,471,0 chrIV 1315208 . A G 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=139;Dels=0.00;FS=3.004;HaplotypeScore=9.6655;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-1.495;QD=18.37;ReadPosRankSum=2.379;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2586,294,0 chrIV 1315285 . T G 2310 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=18.3537;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.09;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2343,267,0 chrIV 1315908 . A G 4275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=187;Dels=0.00;FS=2.949;HaplotypeScore=8.2199;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.420;QD=22.86;ReadPosRankSum=2.410;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:4275,486,0 chrIV 1315959 . G A 3621.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3621,396,0 chrIV 1316046 . G C 2766 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.9331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.48;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2799,321,0 chrIV 1316130 . C T 3663.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3663,411,0 chrIV 1316310 . G A 4687.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.3177;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4687,513,0 chrIV 1316641 . A G 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.3768;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.116;QD=21.77;ReadPosRankSum=1.673;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2602,294,0 chrIV 1316682 . A C 2364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=101;Dels=0.00;FS=4.318;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.697;QD=23.41;ReadPosRankSum=1.697;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2397,270,0 chrIV 1316746 . G A 2734 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.77;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2767,315,0 chrIV 1316858 . C T 3478.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3478,390,0 chrIV 1317146 . C T 4931.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.6880;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.72;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4931,537,0 chrIV 1317219 . A C 4738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=234;Dels=0.00;FS=3.017;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.694;QD=20.25;ReadPosRankSum=2.374;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:2,226:234:99:4738,552,0 chrIV 1317337 . C T 4795.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=17.4451;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.30;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4795,528,0 chrIV 1317887 . G A 5358.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=8.7710;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.26;SB=-3.162e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5358,585,0 chrIV 1317903 . G C 4764.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.06;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:0,247:250:99:4764,555,0 chrIV 1317925 . T C 5353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=273;Dels=0.00;FS=3.590;HaplotypeScore=5.1246;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.395;QD=19.61;ReadPosRankSum=1.719;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:1,271:273:99:5353,621,0 chrIV 1318030 . A C 4198.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.69;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4198,483,0 chrIV 1318045 . G A 4460.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.30;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4460,504,0 chrIV 1318378 . G A 3633.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=15.3231;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.57;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3633,399,0 chrIV 1318438 . G A 4096.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.14;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4096,441,0 chrIV 1318539 . A G 3320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=169;Dels=0.00;FS=3.954;HaplotypeScore=8.1877;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-1.527;QD=19.65;ReadPosRankSum=1.712;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3320,390,0 chrIV 1318695 . C T 4642.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.00;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4642,501,0 chrIV 1318750 . T C 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=3.861;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-1.435;QD=21.57;ReadPosRankSum=1.647;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3537,396,0 chrIV 1318845 . T C 3557.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.23;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3557,408,0 chrIV 1318922 . G T 3174 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=19.71;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3207,354,0 chrIV 1318943 . A T 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=152;Dels=0.00;FS=3.068;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.547;QD=21.20;ReadPosRankSum=1.687;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3256,360,0 chrIV 1319011 . T C 2852 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.1971;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=21.94;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2885,327,0 chrIV 1319047 . A G 2989 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=22.14;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3022,348,0 chrIV 1319224 . T C 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=156;Dels=0.00;FS=2.992;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=-0.937;QD=19.46;ReadPosRankSum=2.418;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3069,342,0 chrIV 1319237 . T C 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=-0.703;QD=18.33;ReadPosRankSum=1.711;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3057,351,0 chrIV 1319259 . C T 3487.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=18.35;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3487,387,0 chrIV 1319285 . C T 3840.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=19.01;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:3840,414,0 chrIV 1319513 . G A 4384.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.98;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4384,495,0 chrIV 1319945 . T A 4431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.161;QD=24.35;ReadPosRankSum=1.713;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4431,471,0 chrIV 1320001 . G C 3770.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.44;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3770,435,0 chrIV 1320115 . G A 5272.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.9153;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.54;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5272,594,0 chrIV 1320420 . A C 3614.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=20.08;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3614,408,0 chrIV 1320439 . G A 3720.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.00;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3720,417,0 chrIV 1320570 . T C 2605 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.67;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2638,306,0 chrIV 1320636 . C T 2214 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.42;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2247,249,0 chrIV 1320639 . A C 1989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-0.062;QD=17.76;ReadPosRankSum=1.701;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2022,240,0 chrIV 1321125 . T C 2430 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.50;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2463,282,0 chrIV 1322017 . C T 467 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.35;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:57:500,57,0 chrIV 1322306 . A G 2200 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2233,252,0 chrIV 1322553 . A G 1957 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1990,228,0 chrIV 1323053 . T C 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=153;Dels=0.00;FS=6.837;HaplotypeScore=8.6632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.855;QD=22.01;ReadPosRankSum=2.401;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:3367,393,0 chrIV 1323104 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=148;Dels=0.00;FS=3.016;HaplotypeScore=11.8206;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.209;QD=21.81;ReadPosRankSum=2.416;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3261,369,0 chrIV 1323143 . T C 3290.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3290,369,0 chrIV 1323397 . G A 3172 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7210;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.50;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3205,345,0 chrIV 1323446 . A T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=13.6122;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.44;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3389,372,0 chrIV 1323775 . C T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.1288;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3727,411,0 chrIV 1323848 . C T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.6219;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=21.95;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3381,363,0 chrIV 1323868 . T C 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.409;QD=20.79;ReadPosRankSum=1.686;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3151,357,0 chrIV 1324886 . T C 4914.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=16.9582;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.65;SB=-2.882e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:4914,567,0 chrIV 1324933 . G A 6197.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=14.0421;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.37;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:6197,693,0 chrIV 1325346 . G A 2492 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.12;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2525,270,0 chrIV 1325849 . A G 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=153;Dels=0.00;FS=9.918;HaplotypeScore=11.4263;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.309;QD=21.71;ReadPosRankSum=2.915;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3321,381,0 chrIV 1326101 . T C 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=152;Dels=0.00;FS=3.367;HaplotypeScore=6.9101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.048;QD=19.84;ReadPosRankSum=1.687;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3048,351,0 chrIV 1326318 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.530;QD=21.82;ReadPosRankSum=1.709;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3263,375,0 chrIV 1326851 . G A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.88;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3889,420,0 chrIV 1326881 . G C 3450.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.29;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,165:170:99:3450,405,0 chrIV 1326959 . C T 2661 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.79;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2694,303,0 chrIV 1327418 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2876;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.386;QD=22.61;ReadPosRankSum=1.663;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3460,390,0 chrIV 1327703 . T C 4041.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.96;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4041,459,0 chrIV 1327736 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.82;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3400,369,0 chrIV 1328033 . G A 2511 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.83;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2544,297,0 chrIV 1328084 . G A 3073 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.28;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3106,354,0 chrIV 1328369 . A T 1885 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=11.7952;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.23;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1918,219,0 chrIV 1329703 . A G 2306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=3.915;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.429;QD=22.83;ReadPosRankSum=1.698;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2339,267,0 chrIV 1330118 . A C 2400 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.08;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2433,282,0 chrIV 1330186 . C T 2414 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;QD=22.15;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2447,273,0 chrIV 1330557 . T A 1993 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.34;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2026,225,0 chrIV 1330559 . C A 1922 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=20.02;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1955,219,0 chrIV 1330621 . T C 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=115;Dels=0.03;FS=0.000;HaplotypeScore=9.3094;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=1.139;QD=20.10;ReadPosRankSum=1.701;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2345,270,0 chrIV 1330650 . A G 2675 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.03;FS=0.000;HaplotypeScore=9.0444;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.06;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2708,309,0 chrIV 1330877 . G T 2716 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.89;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2749,303,0 chrIV 1330885 . T C 2262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.427;DP=128;Dels=0.00;FS=3.045;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.540;QD=17.67;ReadPosRankSum=1.649;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,124:128:99:2295,267,0 chrIV 1330934 . C T 2967 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.14;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3000,324,0 chrIV 1331029 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.1756;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.30;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3085,339,0 chrIV 1331067 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.28;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2618,297,0 chrIV 1331329 . A G 3926.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.2751;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.88;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3926,459,0 chrIV 1331502 . G A 4695.01 SnpCluster AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;QD=21.44;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4695,516,0 chrIV 1331503 . G A 4650.01 SnpCluster AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=21.63;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4650,510,0 chrIV 1331509 . T A 4528.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=5.5199;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;MQRankSum=-0.322;QD=19.43;ReadPosRankSum=1.717;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:4528,495,0 chrIV 1331692 . T C 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=225;Dels=0.00;FS=3.271;HaplotypeScore=8.6979;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;MQRankSum=-1.530;QD=18.00;ReadPosRankSum=1.717;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:1,222:225:99:4049,474,0 chrIV 1331698 . T A 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=214;Dels=0.00;FS=3.241;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;MQRankSum=-0.333;QD=18.87;ReadPosRankSum=1.634;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4038,444,0 chrIV 1331710 . A C 3915.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=18.29;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:3915,456,0 chrIV 1332047 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.59;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3303,354,0 chrIV 1332073 . G T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.67;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3262,369,0 chrIV 1332857 . A G 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.1382;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.200;QD=23.37;ReadPosRankSum=1.709;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3459,399,0 chrIV 1332960 . T G 3082 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.66;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3115,354,0 chrIV 1333088 . A G 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=3.632;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.346;QD=22.42;ReadPosRankSum=1.663;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3408,381,0 chrIV 1333126 . T C 2765 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=20.18;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2798,321,0 chrIV 1333130 . G A 2779 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=20.14;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2812,306,0 chrIV 1333151 . C T 2595 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=18.80;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2628,291,0 chrIV 1333187 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=17.98;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:2964,327,0 chrIV 1333205 . C T 3155 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.0783;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.72;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3188,345,0 chrIV 1333263 . C T 3757.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.47;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3757,405,0 chrIV 1333327 . G A 3821.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.18;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3821,414,0 chrIV 1333379 . G A 4243.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=23.97;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4243,468,0 chrIV 1333408 . C T 4810.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=24.42;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4810,522,0 chrIV 1333478 . A G 3973.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.2480;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.71;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3973,459,0 chrIV 1333527 . A G 4509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=196;Dels=0.00;FS=3.031;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.470;QD=23.01;ReadPosRankSum=2.412;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4509,504,0 chrIV 1333557 . C T 5234.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.0955;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.79;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5234,556,0 chrIV 1333799 . C T 3482.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.18;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3482,378,0 chrIV 1333856 . G A 3680.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.44;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3680,417,0 chrIV 1333898 . A G 4257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=182;Dels=0.00;FS=7.523;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.212;QD=23.39;ReadPosRankSum=2.422;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:4257,477,0 chrIV 1334159 . C T 4323.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.4992;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.88;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4323,474,0 chrIV 1334519 . G A 5395.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=19.8546;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=19.48;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:5395,600,0 chrIV 1334536 . G A 4731.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.84;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4731,510,0 chrIV 1334661 . T C 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=3.779;HaplotypeScore=12.2333;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.136;QD=18.72;ReadPosRankSum=1.714;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:3631,414,0 chrIV 1334925 . G T 5518.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=10.5662;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.25;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5518,615,0 chrIV 1335398 . C A 4371.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.30;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4371,492,0 chrIV 1335542 . A G 6124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=260;Dels=0.00;FS=4.465;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.360;QD=23.55;ReadPosRankSum=1.692;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:1,259:260:99:6124,693,0 chrIV 1335915 . T C 4047.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.13;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4047,471,0 chrIV 1336092 . G A 2775 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2808,303,0 chrIV 1336491 . A G 2740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=3.560;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=0.739;QD=19.16;ReadPosRankSum=1.684;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2773,309,0 chrIV 1336494 . A G 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=3.461;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.098;QD=19.62;ReadPosRankSum=1.708;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2819,318,0 chrIV 1336509 . T C 2228 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=19.54;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2261,258,0 chrIV 1336581 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4441;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.34;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2942,315,0 chrIV 1337050 . A T 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.115;QD=20.50;ReadPosRankSum=1.617;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2493,279,0 chrIV 1337192 . T G 1641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.957;QD=21.59;ReadPosRankSum=1.641;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1674,192,0 chrIV 1337228 . G A 1564 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.14;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1597,174,0 chrIV 1337236 . T C 1558 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=19.00;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1591,180,0 chrIV 1337309 . G C 2812 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.86;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2845,321,0 chrIV 1337684 . C G 5871.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=16.6777;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.91;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:0,265:268:99:5871,689,0 chrIV 1337715 . T C 5427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=248;Dels=0.00;FS=2.748;HaplotypeScore=17.8082;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.796;QD=21.88;ReadPosRankSum=2.429;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:2,244:248:99:5427,621,0 chrIV 1337805 . A C 6556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=294;Dels=0.00;FS=3.544;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-1.708;QD=22.30;ReadPosRankSum=1.685;SB=-3.247e+03 GT:AD:DP:GQ:PL 1/1:1,293:294:99:6556,750,0 chrIV 1337857 . G A 6012.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.80;SB=-3.756e+03 GT:AD:DP:GQ:PL 1/1:0,283:289:99:6012,646,0 chrIV 1337869 . C G 5561.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=7.1227;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.08;SB=-3.509e+03 GT:AD:DP:GQ:PL 1/1:0,274:277:99:5561,639,0 chrIV 1337917 . G A 6129.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.92;SB=-3.394e+03 GT:AD:DP:GQ:PL 1/1:0,291:293:99:6129,687,0 chrIV 1338049 . G A 4540.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=23.77;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4540,504,0 chrIV 1338262 . G T 2932 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.8460;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=21.56;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,132:136:99:2965,318,0 chrIV 1338288 . T C 2179 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=17.43;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2212,252,0 chrIV 1338291 . A G 2182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=4.506;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;MQRankSum=-1.050;QD=17.18;ReadPosRankSum=1.678;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2215,255,0 chrIV 1338321 . T G 1823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=129;Dels=0.03;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-1.150;QD=14.13;ReadPosRankSum=1.704;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:1856,213,0 chrIV 1338322 . C T 1910 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.03;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;QD=14.69;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1943,216,0 chrIV 1338366 . T C 2371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=133;Dels=0.00;FS=2.584;HaplotypeScore=8.4884;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.408;QD=17.83;ReadPosRankSum=2.947;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:3,128:133:99:2404,279,0 chrIV 1338475 . T A 5642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=236;Dels=0.00;FS=5.405;HaplotypeScore=10.2272;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.158;QD=23.91;ReadPosRankSum=2.945;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:3,232:236:99:5642,615,0 chrIV 1338535 . T G 2920 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.9216;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;MQRankSum=-0.335;QD=16.31;ReadPosRankSum=1.712;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:1,175:179:99:2953,345,0 chrIV 1338536 . C A 2861 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=180;Dels=0.00;FS=3.479;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=0.453;QD=15.89;ReadPosRankSum=-1.673;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,176:180:99:2894,310,0 chrIV 1338537 . T C 2827 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5546;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;MQRankSum=-0.343;QD=15.71;ReadPosRankSum=1.693;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:1,176:180:99:2860,336,0 chrIV 1338585 . A T 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=201;Dels=0.00;FS=6.085;HaplotypeScore=13.8844;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-2.312;QD=15.80;ReadPosRankSum=2.854;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:3209,372,0 chrIV 1338669 . T C 4575.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.2517;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.48;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4575,522,0 chrIV 1339080 . A G 3519.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2385;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.33;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3519,396,0 chrIV 1339103 . C T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.62;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3665,399,0 chrIV 1339347 . C T 3374.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.91;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3374,360,0 chrIV 1339488 . C T 2562 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.72;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2595,279,0 chrIV 1339670 . T G 3275.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.44;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3275,375,0 chrIV 1340116 . A C 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.0311;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.574;QD=19.17;ReadPosRankSum=1.506;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2966,339,0 chrIV 1340149 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.34;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3458,387,0 chrIV 1340164 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=19.58;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3264,375,0 chrIV 1340287 . T C 3838.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.12;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3838,450,0 chrIV 1340407 . A G 2855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=4.320;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=0.142;QD=19.55;ReadPosRankSum=1.661;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2888,324,0 chrIV 1340409 . A C 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=143;Dels=0.00;FS=8.510;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=0.284;QD=19.02;ReadPosRankSum=2.364;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2753,309,0 chrIV 1340419 . T G 2793 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=18.25;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2826,321,0 chrIV 1340653 . A C 3521.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=22.86;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3521,402,0 chrIV 1340742 . C T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.30;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3518,384,0 chrIV 1340844 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=22.31;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3279,354,0 chrIV 1340953 . G A 2390 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.73;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2423,264,0 chrIV 1341209 . A G 2046 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7825;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=20.88;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2079,234,0 chrIV 1341251 . A C 2667 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.68;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2700,303,0 chrIV 1341287 . G A 2800 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.90;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2833,324,0 chrIV 1341684 . C G 1517 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=15.80;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1550,174,0 chrIV 1341693 . C T 1411 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=14.25;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1444,165,0 chrIV 1341695 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=49.97;MQ0=0;QD=14.93;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1511,162,0 chrIV 1341749 . T G 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.188;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.8904;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.930;QD=16.91;ReadPosRankSum=0.845;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2079,243,0 chrIV 1341794 . C T 2748 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=21.64;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2781,300,0 chrIV 1341815 . T C 2730 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=19.36;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2763,318,0 chrIV 1341826 . G C 2595 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1291;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=19.08;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2628,300,0 chrIV 1341991 . A G 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.854;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.458;QD=23.43;ReadPosRankSum=1.707;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3220,366,0 chrIV 1342306 . G T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.7771;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.35;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3331,363,0 chrIV 1342433 . G A 4235.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.5661;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=24.48;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4235,462,0 chrIV 1342605 . C T 3797.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.6475;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.08;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3797,405,0 chrIV 1342632 . G A 3731.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.32;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3731,405,0 chrIV 1342654 . C T 3450.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.30;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3450,375,0 chrIV 1342926 . C T 3443.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.11;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3443,372,0 chrIV 1342986 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.5123;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.81;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3877,435,0 chrIV 1343168 . A T 3868.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.4959;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.73;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3868,417,0 chrIV 1343249 . G A 2520 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.9244;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.50;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2553,279,0 chrIV 1343463 . G A 2447 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.30;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2480,273,0 chrIV 1343581 . T C 4315.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.2317;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.45;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4315,495,0 chrIV 1343677 . C T 5043.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5043,564,0 chrIV 1343758 . A G 3821.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.59;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3821,432,0 chrIV 1344013 . G A 3134 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.8162;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.71;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3167,360,0 chrIV 1344040 . G A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.04;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3846,420,0 chrIV 1344085 . G A 3178 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.0998;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.19;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3211,372,0 chrIV 1344235 . C T 3786.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0960;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.37;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3786,429,0 chrIV 1344469 . C T 2660 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.11;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2693,297,0 chrIV 1344480 . A G 2658 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.60;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2691,300,0 chrIV 1344556 . C T 2886 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.0660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.90;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2919,318,0 chrIV 1344681 . C T 3534.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.80;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3534,390,0 chrIV 1344727 . A G 2232 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=19.58;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2265,258,0 chrIV 1344733 . T C 2051 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=17.83;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2084,234,0 chrIV 1345072 . C G 2048 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2365;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.88;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2081,237,0 chrIV 1345591 . T C 2837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=134;Dels=0.00;FS=12.748;HaplotypeScore=7.8276;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.030;QD=21.17;ReadPosRankSum=2.918;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:2870,321,0 chrIV 1345632 . T A 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=136;Dels=0.00;FS=6.015;HaplotypeScore=12.5186;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.948;QD=23.64;ReadPosRankSum=2.948;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:3248,348,0 chrIV 1345811 . G A 3851.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.22;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3851,417,0 chrIV 1345853 . A G 3878.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.16;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3878,453,0 chrIV 1346089 . A C 4029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.6922;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.700;QD=21.32;ReadPosRankSum=1.677;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4029,459,0 chrIV 1346336 . G C 2540 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.1928;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.48;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2573,297,0 chrIV 1346429 . T A 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=0.072;QD=20.84;ReadPosRankSum=1.675;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2555,285,0 chrIV 1346435 . A G 2522 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=20.18;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2555,291,0 chrIV 1346618 . A G 3449.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.5105;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.56;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3449,402,0 chrIV 1346636 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.2726;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.35;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3358,390,0 chrIV 1346678 . G A 3074 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=19.21;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3107,351,0 chrIV 1346702 . T C 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=3.916;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;MQRankSum=-0.428;QD=17.04;ReadPosRankSum=1.712;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:2930,345,0 chrIV 1346703 . A G 2944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=0.856;QD=17.22;ReadPosRankSum=1.712;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:2977,342,0 chrIV 1346810 . T C 3916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=3.993;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.096;QD=24.02;ReadPosRankSum=1.711;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3916,447,0 chrIV 1347437 . G A 2964 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.8298;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.96;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2997,342,0 chrIV 1347464 . C T 2629 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.4998;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.20;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2662,297,0 chrIV 1347713 . A G 3159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=3.297;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.437;QD=22.40;ReadPosRankSum=1.708;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3192,366,0 chrIV 1347800 . C T 2891 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=22.07;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2924,318,0 chrIV 1347821 . A G 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=3.720;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=0.925;QD=21.86;ReadPosRankSum=1.708;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3224,360,0 chrIV 1347847 . A G 2972 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.22;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3005,348,0 chrIV 1347956 . A G 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.00;FS=3.342;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.503;QD=18.90;ReadPosRankSum=1.707;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2622,312,0 chrIV 1348046 . C T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.12;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3451,372,0 chrIV 1348097 . A G 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=182;Dels=0.00;FS=3.979;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.366;QD=23.84;ReadPosRankSum=1.694;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:4338,495,0 chrIV 1348544 . T A 3831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=2.928;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.082;QD=23.08;ReadPosRankSum=2.405;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3831,408,0 chrIV 1348613 . A G 4153.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=20.46;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4153,468,0 chrIV 1348652 . C A 4140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.407;DP=215;Dels=0.00;FS=4.833;HaplotypeScore=11.7385;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.163;QD=19.26;ReadPosRankSum=-0.041;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,212:215:99:4140,442,0 chrIV 1348664 . G A 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=198;Dels=0.00;FS=5.163;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=1.205;QD=19.89;ReadPosRankSum=-1.011;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:3938,411,0 chrIV 1348712 . T C 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.946;DP=168;Dels=0.00;FS=13.928;HaplotypeScore=12.0783;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.621;QD=18.06;ReadPosRankSum=2.898;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:3067,332,0 chrIV 1348781 . C T 3194 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=21.44;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3227,360,0 chrIV 1348787 . T C 3058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=152;Dels=0.00;FS=3.430;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.296;QD=20.12;ReadPosRankSum=1.687;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3091,351,0 chrIV 1348912 . C T 2706 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.98;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2739,297,0 chrIV 1349687 . T C 3486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.071;DP=163;Dels=0.00;FS=8.800;HaplotypeScore=15.1751;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.365;QD=21.39;ReadPosRankSum=3.340;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:4,158:163:99:3486,408,0 chrIV 1349944 . C T 4045.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4045,441,0 chrIV 1350135 . T C 2820 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=18.43;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2853,330,0 chrIV 1350342 . G A 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.727;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.5727;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.417;QD=20.45;ReadPosRankSum=4.583;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:8,132:140:99:2896,324,0 chrIV 1350343 . A G 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.129;DP=140;Dels=0.01;FS=3.652;HaplotypeScore=12.3098;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.861;QD=19.64;ReadPosRankSum=3.941;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:6,132:138:99:2782,324,0 chrIV 1350454 . T C 2349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=109;Dels=0.00;FS=7.980;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.484;QD=21.55;ReadPosRankSum=2.404;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:2,105:109:99:2382,270,0 chrIV 1350585 . T C 2706 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.95;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2739,306,0 chrIV 1350913 . T C 4117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=176;Dels=0.00;FS=5.987;HaplotypeScore=10.5293;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.166;QD=23.39;ReadPosRankSum=2.960;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:4117,471,0 chrIV 1351660 . A T 2541 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.10;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2574,294,0 chrIV 1351681 . C T 3184 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.59;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3217,354,0 chrIV 1351744 . C T 2680 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.9757;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.97;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2713,303,0 chrIV 1351777 . G A 1904 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.04;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1937,210,0 chrIV 1351789 . T G 1766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=13.3178;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-1.466;QD=16.50;ReadPosRankSum=1.699;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,103:107:99:1799,213,0 chrIV 1351900 . A G 3227.04 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.92;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3260,387,0 chrIV 1351996 . G A 3307.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.79;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3307,366,0 chrIV 1352285 . T C 3184 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=20.28;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3217,360,0 chrIV 1352298 . G C 2634 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=18.29;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2667,306,0 chrIV 1352299 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=19.76;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2819,300,0 chrIV 1352558 . A C 1214 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=2;QD=19.90;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1247,141,0 chrIV 1352562 . A T 1330 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.99;MQ0=2;QD=22.54;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1363,147,0 chrIV 1352638 . G A 966 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=51;Dels=0.00;FS=25.567;HaplotypeScore=12.6895;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=4;MQRankSum=0.448;QD=18.94;ReadPosRankSum=-0.079;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:6,45:51:99:999,111,0 chrIV 1352644 . T A 860 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.282;DP=55;Dels=0.00;FS=24.988;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=25.20;MQ0=11;MQRankSum=1.437;QD=15.64;ReadPosRankSum=-2.395;SB=-2.001e+01 GT:AD:DP:GQ:PL 1/1:13,42:55:80:893,80,0 chrIV 1352749 . T A 45.97 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=9.9469;MLEAC=2;MLEAF=1.00;MQ=17.38;MQ0=25;QD=1.18;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:25,14:39:9:78,9,0 chrIV 1352769 . C T 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.16;MQ0=23;QD=1.74;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:23,4:27:9:79,9,0 chrIV 1352772 . A C 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.59;MQ0=26;QD=1.57;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:26,4:30:9:79,9,0 chrIV 1352775 . G T 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.42;MQ0=27;QD=1.58;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:26,5:31:9:81,9,0 chrIV 1352785 . G A 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.42;MQ0=27;QD=1.61;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:27,4:31:9:82,9,0 chrIV 1352786 . T C 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.42;MQ0=27;QD=1.35;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:27,4:31:9:74,9,0 chrIV 1352787 . A G 50.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.42;MQ0=27;QD=1.64;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:27,4:31:9:83,9,0 chrIV 1352792 . G A 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.10;MQ0=29;QD=1.51;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:29,4:33:9:82,9,0 chrIV 1352974 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.67;MQ0=1;QD=2.48;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:1,7:8:6:51,6,0 chrIV 1353101 . T G 1698 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;QD=19.08;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1731,195,0 chrIV 1353103 . A G 1631 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=18.33;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1664,189,0 chrIV 1353158 . T A 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=108;Dels=0.00;FS=6.233;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=43.01;MQ0=0;MQRankSum=0.107;QD=18.24;ReadPosRankSum=2.331;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2003,219,0 chrIV 1353214 . A G 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=4.433;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;MQRankSum=0.280;QD=22.31;ReadPosRankSum=1.707;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3089,351,0 chrIV 1353245 . A C 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=153;Dels=0.00;FS=13.485;HaplotypeScore=6.5617;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;MQRankSum=0.441;QD=20.80;ReadPosRankSum=2.928;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3215,366,0 chrIV 1353261 . C T 2772 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0554;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=19.38;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:2805,318,0 chrIV 1353325 . C T 3650.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=22.53;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3650,402,0 chrIV 1353372 . T C 4470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.268;DP=213;Dels=0.00;FS=7.079;HaplotypeScore=3.5562;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-1.219;QD=20.99;ReadPosRankSum=4.393;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:7,206:213:99:4470,501,0 chrIV 1353386 . T C 4239.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.9091;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.78;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4239,480,0 chrIV 1353387 . T C 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.749;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.9224;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-2.000;QD=20.21;ReadPosRankSum=2.907;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:3,201:204:99:4122,468,0 chrIV 1353470 . A G 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=0.062;QD=19.20;ReadPosRankSum=1.632;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2702,309,0 chrIV 1353481 . A G 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=1.111;QD=19.34;ReadPosRankSum=1.660;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2856,324,0 chrIV 1353486 . T A 2866 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=20.04;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2899,321,0 chrIV 1353632 . A T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=23.36;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3458,396,0 chrIV 1353675 . A G 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=115;Dels=0.01;FS=8.254;HaplotypeScore=96.2120;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=1.666;QD=18.81;ReadPosRankSum=2.406;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2196,252,0 chrIV 1353826 . T C 1820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=3.578;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-0.212;QD=18.57;ReadPosRankSum=1.697;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1853,210,0 chrIV 1353834 . C A 1797 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=17.62;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1830,207,0 chrIV 1353968 . C T 2614 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.1379;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.76;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2647,285,0 chrIV 1353991 . A G 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=111;Dels=0.00;FS=3.693;HaplotypeScore=8.9966;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=1.291;QD=20.74;ReadPosRankSum=1.638;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2335,264,0 chrIV 1354336 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.710;QD=23.63;ReadPosRankSum=1.657;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3308,369,0 chrIV 1355944 . G A 2483 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.22;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2516,288,0 chrIV 1356006 . C G 3226.07 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.51;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3259,369,0 chrIV 1356897 . C A 4584.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.4992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:4584,492,0 chrIV 1357024 . G T 3465.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.9085;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.75;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3465,384,0 chrIV 1357207 . A G 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=158;Dels=0.00;FS=2.861;HaplotypeScore=13.4961;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.688;QD=20.18;ReadPosRankSum=2.341;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3221,360,0 chrIV 1357237 . A G 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.8258;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.497;QD=20.39;ReadPosRankSum=1.625;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2663,306,0 chrIV 1357270 . G A 2694 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.63;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2727,300,0 chrIV 1357702 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.85;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2618,285,0 chrIV 1357804 . T C 2823 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2856,333,0 chrIV 1359219 . A T 2459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-0.844;QD=20.49;ReadPosRankSum=1.703;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2492,273,0 chrIV 1359221 . T A 2625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.149;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=0.966;QD=21.52;ReadPosRankSum=2.328;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2658,288,0 chrIV 1359481 . C T 2310 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=17.8155;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.87;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2343,261,0 chrIV 1359585 . A G 3080 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.16;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3113,351,0 chrIV 1359646 . C G 3341.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0067;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.36;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3341,372,0 chrIV 1359745 . C T 3304.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3304,366,0 chrIV 1359892 . T A 3275.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.59;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3275,360,0 chrIV 1359987 . A G 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.069;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.647;QD=22.99;ReadPosRankSum=1.709;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3449,396,0 chrIV 1360067 . C G 2470 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.41;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2503,285,0 chrIV 1360070 . T C 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=3.595;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.189;QD=20.39;ReadPosRankSum=1.703;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2480,282,0 chrIV 1361031 . A G 2334 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.57;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2367,267,0 chrIV 1361086 . C T 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1530;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.339;QD=24.27;ReadPosRankSum=-0.518;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2387,234,0 chrIV 1361162 . T C 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=136;Dels=0.00;FS=2.973;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=1.739;QD=21.35;ReadPosRankSum=2.413;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2937,333,0 chrIV 1361285 . T C 4774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.976;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.8923;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.723;QD=22.95;ReadPosRankSum=1.539;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:3,204:208:99:4774,522,0 chrIV 1361345 . T G 164.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.606;DP=141;Dels=0.00;FS=261.161;HaplotypeScore=18.7457;MLEAC=1;MLEAF=0.500;MQ=56.82;MQ0=0;MQRankSum=-0.182;QD=1.16;ReadPosRankSum=-4.078;SB=-6.086e-03 GT:AD:DP:GQ:PL 0/1:82,58:141:99:194,0,1321 chrIV 1361390 . T A 2604 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=17.48;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2637,297,0 chrIV 1361393 . C T 2448 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.7753;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=16.43;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,143:149:99:2481,279,0 chrIV 1361513 . G A 5395.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=17.5009;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.29;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5395,603,0 chrIV 1361712 . T C 4125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=3.830;HaplotypeScore=11.9660;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.136;QD=22.18;ReadPosRankSum=1.695;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4125,483,0 chrIV 1362063 . T A 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=3.262;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.631;QD=23.50;ReadPosRankSum=1.643;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4583,492,0 chrIV 1362236 . C T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.8836;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.11;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3272,372,0 chrIV 1362620 . G A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.65;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3486,393,0 chrIV 1362669 . C G 3564.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.84;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3564,417,0 chrIV 1362933 . A G 2946 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.75;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2979,345,0 chrIV 1363089 . G A 4341.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.85;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4341,474,0 chrIV 1363897 . C T 3925.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.53;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3925,423,0 chrIV 1364143 . A T 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.579;QD=21.59;ReadPosRankSum=1.701;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2494,276,0 chrIV 1364228 . G A 3493.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.44;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3493,381,0 chrIV 1364368 . T C 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.052;QD=22.53;ReadPosRankSum=1.627;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3030,345,0 chrIV 1364473 . G A 2869 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.71;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2902,312,0 chrIV 1364750 . A G 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.379;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;MQRankSum=-0.218;QD=23.66;ReadPosRankSum=1.604;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3227,360,0 chrIV 1364977 . G A 2050 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=17.52;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2083,228,0 chrIV 1365000 . C G 2242 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.1402;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=17.94;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2275,261,0 chrIV 1365372 . T A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.28;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3263,363,0 chrIV 1365732 . G A 3374.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.27;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3374,366,0 chrIV 1365832 . C T 2915 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=20.38;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2948,333,0 chrIV 1365851 . C T 2893 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.2563;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.81;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2926,321,0 chrIV 1365910 . A T 2400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=129;Dels=0.00;FS=3.044;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-0.951;QD=18.60;ReadPosRankSum=2.411;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2433,276,0 chrIV 1365932 . G A 2260 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.55;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2293,249,0 chrIV 1365971 . C T 2718 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=16.4369;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.74;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2751,300,0 chrIV 1366074 . G T 2870 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=11.0856;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.95;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2903,321,0 chrIV 1366117 . T C 1954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=103;Dels=0.00;FS=3.274;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-1.189;QD=18.97;ReadPosRankSum=1.698;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:1987,225,0 chrIV 1366294 . T C 2806 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=19.1062;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.27;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,122:126:99:2839,324,0 chrIV 1366606 . G A 3649.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.54;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3649,393,0 chrIV 1367147 . G A 3714.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.85;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3714,420,0 chrIV 1367163 . T C 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.8321;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.385;QD=21.25;ReadPosRankSum=1.713;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3867,438,0 chrIV 1367446 . G A 4211.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.34;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4211,456,0 chrIV 1367859 . T C 2455 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.96;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2488,282,0 chrIV 1368022 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.3883;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.95;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3017,327,0 chrIV 1368120 . T C 2615 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.09;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2648,303,0 chrIV 1368382 . T C 3679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=171;Dels=0.00;FS=6.257;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.411;QD=21.51;ReadPosRankSum=2.318;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:2,166:171:99:3679,420,0 chrIV 1368684 . T C 3803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=172;Dels=0.00;FS=2.993;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.898;QD=22.11;ReadPosRankSum=2.392;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3803,438,0 chrIV 1368897 . A G 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=165;Dels=0.00;FS=2.686;HaplotypeScore=11.4530;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.249;QD=18.86;ReadPosRankSum=2.419;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3145,369,0 chrIV 1369043 . A C 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=142;Dels=0.00;FS=2.999;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.632;QD=21.56;ReadPosRankSum=2.225;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3094,369,0 chrIV 1369133 . A G 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=134;Dels=0.00;FS=3.315;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-1.159;QD=18.37;ReadPosRankSum=1.706;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2494,282,0 chrIV 1369140 . C T 2714 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.0904;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.67;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2747,309,0 chrIV 1369182 . G A 2913 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.51;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2946,321,0 chrIV 1369263 . C T 2450 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2483,270,0 chrIV 1369362 . A T 1759 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.2293;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.32;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1792,201,0 chrIV 1369417 . A C 2017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.257;QD=19.39;ReadPosRankSum=1.698;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2050,234,0 chrIV 1369505 . G T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.89;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3559,387,0 chrIV 1369744 . G C 4148.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.79;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,178:182:99:4148,471,0 chrIV 1370065 . T A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.4982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3244,354,0 chrIV 1370179 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.47;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3497,387,0 chrIV 1371727 . A G 3153 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.83;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3186,369,0 chrIV 1371862 . A G 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=154;Dels=0.00;FS=2.779;HaplotypeScore=12.2215;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.886;QD=21.77;ReadPosRankSum=2.354;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3352,387,0 chrIV 1372206 . T C 2894 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2927,333,0 chrIV 1372366 . C T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3272,351,0 chrIV 1372422 . G A 2921 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2954,321,0 chrIV 1372756 . G A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.59;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3389,372,0 chrIV 1373769 . G A 2622 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2655,291,0 chrIV 1374352 . T C 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.674;QD=23.39;ReadPosRankSum=1.693;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4163,483,0 chrIV 1374505 . T G 3348.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3348,384,0 chrIV 1374919 . C T 3274.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.5604;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.25;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3274,357,0 chrIV 1375312 . C T 3744.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.29;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3744,423,0 chrIV 1375727 . G A 5638.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.58;SB=-3.210e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:5638,639,0 chrIV 1375729 . G A 5613.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.49;SB=-3.266e+03 GT:AD:DP:GQ:PL 1/1:0,287:288:99:5613,645,0 chrIV 1376221 . C A 3778.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.2392;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.59;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3778,420,0 chrIV 1377080 . G A 3091 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.32;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3124,354,0 chrIV 1377451 . G A 3175 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3208,360,0 chrIV 1377547 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.97;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3334,381,0 chrIV 1377724 . C T 2813 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2846,318,0 chrIV 1377781 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2827,318,0 chrIV 1377887 . G A 2883 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2916,315,0 chrIV 1377988 . G A 2793 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2826,309,0 chrIV 1378471 . A G 2930 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.82;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2963,339,0 chrIV 1379733 . T A 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=104;Dels=0.00;FS=3.938;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.933;QD=21.10;ReadPosRankSum=1.666;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2227,243,0 chrIV 1379791 . A C 1995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=103;Dels=0.00;FS=2.873;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.155;QD=19.37;ReadPosRankSum=2.402;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2028,231,0 chrIV 1379806 . T C 1983 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=19.07;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2016,228,0 chrIV 1379888 . C T 2076 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.57;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2109,237,0 chrIV 1380270 . A G 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=142;Dels=0.00;FS=6.763;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.828;QD=21.07;ReadPosRankSum=2.310;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3025,345,0 chrIV 1380625 . A G 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=3.445;HaplotypeScore=4.3408;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.852;QD=21.33;ReadPosRankSum=1.705;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2720,309,0 chrIV 1380649 . T C 2564 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.68;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2597,297,0 chrIV 1381535 . G T 2545 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.58;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2578,288,0 chrIV 1382179 . G A 2041 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.68;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2074,225,0 chrIV 1382799 . A G 4492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=192;Dels=0.00;FS=7.061;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.907;QD=23.40;ReadPosRankSum=2.347;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4492,507,0 chrIV 1382829 . A G 4351.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.14;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4351,492,0 chrIV 1382859 . G A 4037.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.6691;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.25;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4037,453,0 chrIV 1382973 . A G 5712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=248;Dels=0.00;FS=3.340;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.436;QD=23.03;ReadPosRankSum=1.704;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:1,245:248:99:5712,651,0 chrIV 1383033 . C T 5115.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.83;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,221:224:99:5115,567,0 chrIV 1383475 . G A 3743.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.8995;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.27;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3743,411,0 chrIV 1383527 . C T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.02;FS=0.000;HaplotypeScore=29.2944;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.69;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3796,420,0 chrIV 1383709 . A G 3025 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.01;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3058,360,0 chrIV 1383799 . A C 3661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=3.038;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.054;QD=22.88;ReadPosRankSum=1.645;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3661,423,0 chrIV 1383939 . T C 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=160;Dels=0.00;FS=10.240;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.601;QD=21.56;ReadPosRankSum=2.931;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:3,156:160:99:3449,399,0 chrIV 1384185 . T C 3443.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.1375;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=17.75;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3443,399,0 chrIV 1384197 . C T 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=185;Dels=0.00;FS=3.010;HaplotypeScore=3.9631;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=1.280;QD=17.13;ReadPosRankSum=1.694;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:3202,341,0 chrIV 1384770 . G A 5320.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5320,576,0 chrIV 1385256 . C A 1113 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.5084;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.53;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1146,126,0 chrIV 1385323 . C T 1115 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=16.89;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1148,123,0 chrIV 1385522 . A G 1390 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=13.6755;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=17.82;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,74:78:99:1423,174,0 chrIV 1385632 . A G 2028 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=22.29;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2061,234,0 chrIV 1385671 . C T 2624 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9120;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=24.99;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2657,297,0 chrIV 1385843 . G A 4464.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=4.8423;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=19.00;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4464,507,0 chrIV 1385846 . G A 4705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=238;Dels=0.00;FS=3.736;HaplotypeScore=2.5838;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=1.643;QD=19.77;ReadPosRankSum=0.859;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:1,233:238:99:4705,519,0 chrIV 1385926 . G T 4117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=194;Dels=0.00;FS=3.031;HaplotypeScore=18.3074;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=1.764;QD=21.22;ReadPosRankSum=1.403;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:2,190:194:99:4117,453,0 chrIV 1386009 . C T 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=215;Dels=0.02;FS=0.000;HaplotypeScore=23.2581;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=-0.660;QD=14.23;ReadPosRankSum=1.650;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:3093,336,0 chrIV 1386016 . T C 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=7.8759;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;MQRankSum=-0.749;QD=13.58;ReadPosRankSum=1.717;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:3237,366,0 chrIV 1386659 . T G 1649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DP=120;Dels=0.00;FS=3.832;HaplotypeScore=17.0931;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;MQRankSum=-0.179;QD=13.74;ReadPosRankSum=1.643;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,115:120:99:1682,179,0 chrIV 1386670 . T C 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.480;DP=123;Dels=0.00;FS=2.228;HaplotypeScore=102.0156;MLEAC=1;MLEAF=0.500;MQ=44.55;MQ0=0;MQRankSum=1.087;QD=0.11;ReadPosRankSum=-4.164;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:105,16:123:43:43,0,125 chrIV 1386693 . A G 1251 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=73.0671;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=12.03;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1284,153,0 chrIV 1386851 . T C 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.401;DP=153;Dels=0.00;FS=5.236;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-1.686;QD=19.90;ReadPosRankSum=3.332;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:4,148:153:99:3078,354,0 chrIV 1386861 . A T 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=155;Dels=0.00;FS=4.914;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;MQRankSum=-0.548;QD=19.59;ReadPosRankSum=1.710;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3070,333,0 chrIV 1386935 . T C 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=159;Dels=0.00;FS=6.099;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=0.627;QD=20.99;ReadPosRankSum=2.918;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:3337,375,0 chrIV 1386977 . T A 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=4.278;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-1.622;QD=23.78;ReadPosRankSum=1.688;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3781,411,0 chrIV 1387061 . G C 4494.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.71;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4494,513,0 chrIV 1387160 . G A 2829 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=18.86;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2862,321,0 chrIV 1387173 . C T 2681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;MQRankSum=0.849;QD=17.87;ReadPosRankSum=0.872;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:2714,294,0 chrIV 1387181 . A G 2535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=154;Dels=0.00;FS=4.138;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=0.215;QD=16.46;ReadPosRankSum=1.642;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:2568,294,0 chrIV 1387223 . C T 3555.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.01;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3555,390,0 chrIV 1387313 . C T 5837.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=23.0029;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.07;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5837,636,0 chrIV 1387436 . T C 4119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=205;Dels=0.00;FS=7.331;HaplotypeScore=10.2405;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.620;QD=20.09;ReadPosRankSum=2.425;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:4119,477,0 chrIV 1387622 . G A 3670.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3670,405,0 chrIV 1387745 . C T 3401.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.46;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3401,378,0 chrIV 1387907 . A T 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=3.670;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=-1.537;QD=22.58;ReadPosRankSum=1.708;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3261,360,0 chrIV 1387967 . T G 2712 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=18.32;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2745,324,0 chrIV 1387982 . C T 2833 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=18.40;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2866,318,0 chrIV 1388069 . T C 3879.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.92;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3879,441,0 chrIV 1388094 . A G 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=179;Dels=0.00;FS=7.474;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.228;QD=21.55;ReadPosRankSum=2.395;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3857,438,0 chrIV 1388231 . C T 4430.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.9095;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.56;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4430,480,0 chrIV 1388273 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.24;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3440,372,0 chrIV 1388378 . A G 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-1.732;QD=22.54;ReadPosRankSum=1.707;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3166,354,0 chrIV 1388568 . C T 2388 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=21.51;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2421,279,0 chrIV 1388583 . C T 2163 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=20.60;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2196,246,0 chrIV 1388592 . T C 1559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;MQRankSum=-0.375;QD=16.07;ReadPosRankSum=1.696;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1592,189,0 chrIV 1388608 . C T 1195 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;QD=14.94;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1228,144,0 chrIV 1388623 . C T 1119 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.88;MQ0=0;QD=14.53;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1152,132,0 chrIV 1388811 . A G 1456 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=46.7779;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=14.86;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1489,177,0 chrIV 1389010 . T A 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=150;Dels=0.00;FS=2.803;HaplotypeScore=10.5662;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.058;QD=24.14;ReadPosRankSum=2.318;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3621,393,0 chrIV 1389081 . G A 4365.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.47;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4365,471,0 chrIV 1389124 . G A 4014.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.07;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4014,438,0 chrIV 1389212 . C G 4383.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.48;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4383,501,0 chrIV 1389271 . T C 4688.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.2694;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.65;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4688,540,0 chrIV 1389819 . A T 3489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.647;QD=21.15;ReadPosRankSum=1.689;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3489,396,0 chrIV 1389902 . G C 3593.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.1628;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.60;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3593,411,0 chrIV 1390041 . A T 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=3.041;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.296;QD=22.26;ReadPosRankSum=1.708;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3238,366,0 chrIV 1390233 . A G 3298.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.9896;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.84;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3298,375,0 chrIV 1390615 . G A 3854.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=16.9482;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.09;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3854,417,0 chrIV 1390794 . T A 3035 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.82;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3068,345,0 chrIV 1390995 . T G 2943 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2976,354,0 chrIV 1391073 . T C 3439.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.23;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3439,399,0 chrIV 1391127 . C T 2417 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2770;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=17.39;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2450,270,0 chrIV 1391157 . A G 2588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-1.124;QD=19.61;ReadPosRankSum=1.706;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2621,297,0 chrIV 1391349 . T C 2609 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.1962;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=17.63;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2642,306,0 chrIV 1391355 . T C 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.4008;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=0.160;QD=17.14;ReadPosRankSum=1.709;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:2673,300,0 chrIV 1391403 . G A 2159 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=13.33;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2192,249,0 chrIV 1391478 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.96;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3338,366,0 chrIV 1391571 . C A 4160.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=22.86;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4160,462,0 chrIV 1391586 . A G 4073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=193;Dels=0.00;FS=9.153;HaplotypeScore=12.0534;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.993;QD=21.10;ReadPosRankSum=3.414;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:4,186:193:99:4073,456,0 chrIV 1391636 . A G 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=197;Dels=0.00;FS=6.787;HaplotypeScore=15.9703;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=1.798;QD=20.63;ReadPosRankSum=2.412;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:4065,456,0 chrIV 1391718 . C G 3976.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.2991;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.59;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3976,456,0 chrIV 1391780 . G A 4139.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.8868;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.49;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4139,447,0 chrIV 1391832 . G A 4812.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.36;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4812,528,0 chrIV 1391986 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.3300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3421,381,0 chrIV 1392091 . A G 3094 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.09;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3127,354,0 chrIV 1392105 . T C 2651 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=18.41;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2684,312,0 chrIV 1392142 . C G 2441 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.07;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2474,294,0 chrIV 1392399 . T A 2760 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=20.0246;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.90;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2793,306,0 chrIV 1392663 . G A 3562.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.36;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3562,387,0 chrIV 1392681 . T C 3323.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.7652;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=17.58;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3323,384,0 chrIV 1392771 . G A 4568.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.6531;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4568,507,0 chrIV 1392855 . T C 4425.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.91;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4425,516,0 chrIV 1393320 . T A 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.674;QD=21.54;ReadPosRankSum=1.649;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3597,405,0 chrIV 1393432 . T C 4067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.726;QD=22.72;ReadPosRankSum=1.655;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4067,453,0 chrIV 1393543 . A C 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.716;QD=20.77;ReadPosRankSum=1.696;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3968,462,0 chrIV 1393591 . T C 4428.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.50;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4428,507,0 chrIV 1393893 . G C 4144.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=19.73;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4144,468,0 chrIV 1393903 . C T 4139.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.00;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4139,453,0 chrIV 1394008 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.91;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3596,402,0 chrIV 1394087 . C T 3455.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.1248;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=20.44;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:3455,375,0 chrIV 1394233 . T C 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=135;Dels=0.00;FS=3.031;HaplotypeScore=12.4780;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.430;QD=19.79;ReadPosRankSum=2.395;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2705,315,0 chrIV 1394566 . T C 3097 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3130,357,0 chrIV 1394881 . A T 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2630;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.365;QD=23.81;ReadPosRankSum=0.443;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3785,417,0 chrIV 1395229 . A T 2003 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2036,222,0 chrIV 1395576 . T C 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=162;Dels=0.00;FS=2.844;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.392;QD=22.84;ReadPosRankSum=2.388;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:3700,420,0 chrIV 1395687 . C T 3689.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.1204;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.08;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3689,402,0 chrIV 1396357 . G A 5175.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=14.3361;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.47;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5175,600,0 chrIV 1396590 . A G 4177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=223;Dels=0.00;FS=2.531;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.596;QD=18.73;ReadPosRankSum=2.968;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:3,218:223:99:4177,468,0 chrIV 1396686 . T C 4686.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.31;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4686,540,0 chrIV 1396808 . G A 3022 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.90;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3055,333,0 chrIV 1396824 . C T 3124 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.47;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3157,348,0 chrIV 1397034 . G T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.23;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3376,378,0 chrIV 1397134 . G C 2466 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=15.9616;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.38;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,116:121:99:2499,285,0 chrIV 1397575 . A G 4157.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.11;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4157,471,0 chrIV 1397646 . C T 2957 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.7465;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.45;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:2990,324,0 chrIV 1397754 . A G 4540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.677;QD=23.89;ReadPosRankSum=1.714;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4540,510,0 chrIV 1397817 . A G 2806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=128;Dels=0.00;FS=2.790;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.726;QD=21.92;ReadPosRankSum=2.411;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2839,327,0 chrIV 1398006 . G A 3113 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=13.2561;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.89;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3146,342,0 chrIV 1398346 . C T 5846.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=11.8768;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.38;SB=-2.830e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5846,633,0 chrIV 1398466 . T C 6320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-0.485;QD=22.82;ReadPosRankSum=1.719;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:1,274:277:99:6320,711,0 chrIV 1398785 . T C 3640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=165;Dels=0.00;FS=11.703;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.067;QD=22.06;ReadPosRankSum=2.420;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3640,411,0 chrIV 1398909 . C T 3021 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=21.13;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3054,339,0 chrIV 1399211 . T C 4364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=191;Dels=0.00;FS=3.757;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.036;QD=22.85;ReadPosRankSum=1.696;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4364,507,0 chrIV 1399661 . G A 1489 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.27;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1522,165,0 chrIV 1399820 . T C 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=144;Dels=0.00;FS=5.780;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.641;QD=22.10;ReadPosRankSum=2.838;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:3216,360,0 chrIV 1399937 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=3.408;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.061;QD=22.56;ReadPosRankSum=1.667;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3632,414,0 chrIV 1399955 . G A 3686.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.94;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3686,396,0 chrIV 1400438 . G A 4219.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=24.82;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4219,459,0 chrIV 1400633 . G A 4140.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.1648;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.66;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4140,456,0 chrIV 1400704 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=18.13;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3536,390,0 chrIV 1400903 . A G 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=148;Dels=0.00;FS=11.040;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.878;QD=21.70;ReadPosRankSum=2.925;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:3244,375,0 chrIV 1400933 . G A 3332.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=22.82;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3332,357,0 chrIV 1401279 . A G 2043 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.257;DP=131;Dels=0.00;FS=5.196;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=40.20;MQ0=0;MQRankSum=-2.361;QD=15.60;ReadPosRankSum=3.391;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:4,127:131:99:2076,237,0 chrIV 1401283 . A G 1800 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=118;Dels=0.00;FS=2.597;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.39;MQ0=0;MQRankSum=-1.453;QD=15.25;ReadPosRankSum=2.735;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:1833,210,0 chrIV 1401284 . A G 1804 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=114;Dels=0.00;FS=2.599;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=0;MQRankSum=-2.071;QD=15.82;ReadPosRankSum=2.921;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:1837,207,0 chrIV 1401288 . C T 1761 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=0;QD=16.01;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1794,192,0 chrIV 1401289 . C T 1748 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=0;QD=15.89;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1781,192,0 chrIV 1401432 . T G 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=145;Dels=0.01;FS=2.584;HaplotypeScore=7.6858;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=0.156;QD=21.29;ReadPosRankSum=2.922;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:3120,357,0 chrIV 1401497 . T C 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=0.357;QD=20.87;ReadPosRankSum=1.705;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2684,309,0 chrIV 1401563 . T C 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-1.216;QD=21.14;ReadPosRankSum=1.634;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3035,348,0 chrIV 1401828 . C A 3488.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.57;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3488,393,0 chrIV 1401877 . A G 3486.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.21;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3486,396,0 chrIV 1402134 . A G 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=3.820;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=-1.096;QD=22.99;ReadPosRankSum=1.709;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3403,381,0 chrIV 1402144 . G C 2986 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.6985;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.18;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,135:141:99:3019,345,0 chrIV 1402240 . C T 6086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.3072;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.155;QD=25.57;ReadPosRankSum=1.083;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,237:238:99:6086,655,0 chrIV 1402305 . C T 4806.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4806,534,0 chrIV 1402695 . T C 1734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=98;Dels=0.00;FS=2.999;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.267;QD=17.69;ReadPosRankSum=2.399;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:2,95:98:99:1767,201,0 chrIV 1402714 . G C 1962 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.44;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1995,228,0 chrIV 1402760 . A G 1693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.603;QD=19.02;ReadPosRankSum=1.654;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1726,198,0 chrIV 1402910 . T C 2313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.227;QD=23.13;ReadPosRankSum=1.697;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2346,264,0 chrIV 1403082 . C T 2558 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.86;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2591,288,0 chrIV 1403147 . T G 3137 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.07;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3170,366,0 chrIV 1403669 . A C 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=3.245;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.133;QD=19.84;ReadPosRankSum=1.706;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2672,306,0 chrIV 1403689 . A G 2722 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.10;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2755,315,0 chrIV 1403723 . T C 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.205;QD=20.58;ReadPosRankSum=1.707;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2873,330,0 chrIV 1403771 . C T 3694.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.53;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3694,414,0 chrIV 1404062 . A G 3543.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.71;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3543,411,0 chrIV 1404228 . G A 2618 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.82;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2651,291,0 chrIV 1404745 . G A 3158 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.40;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3191,342,0 chrIV 1404826 . C T 3820.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.6525;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.87;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3820,411,0 chrIV 1405144 . C T 6060.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=12.6381;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.61;SB=-2.823e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6060,666,0 chrIV 1405366 . A G 4506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.635;DP=230;Dels=0.00;FS=4.849;HaplotypeScore=17.4741;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.510;QD=19.59;ReadPosRankSum=3.812;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:5,225:230:99:4506,519,0 chrIV 1405690 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.97;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2950,333,0 chrIV 1405860 . C T 2107 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.26;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2140,240,0 chrIV 1405995 . G A 2268 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.60;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2301,255,0 chrIV 1406105 . C G 3156 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3189,372,0 chrIV 1406179 . T C 2497 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.10;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2530,291,0 chrIV 1406350 . T C 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.611;QD=20.99;ReadPosRankSum=1.707;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2887,330,0 chrIV 1406418 . A C 2479 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=18.78;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2512,291,0 chrIV 1406432 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.19;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2796,318,0 chrIV 1406526 . A G 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.191;DP=135;Dels=0.00;FS=3.023;HaplotypeScore=12.8036;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.471;QD=19.51;ReadPosRankSum=2.339;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:2,131:135:99:2667,312,0 chrIV 1406566 . A G 2822 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.22;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2855,336,0 chrIV 1406875 . G A 3295.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.85;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3295,354,0 chrIV 1406893 . C A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.8755;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.46;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4077,450,0 chrIV 1406925 . C T 4014.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.6972;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.58;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4014,438,0 chrIV 1406984 . G A 4055.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.57;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4055,441,0 chrIV 1407015 . T G 4242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.9740;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.698;QD=20.90;ReadPosRankSum=1.715;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4242,480,0 chrIV 1407144 . A G 5752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=244;Dels=0.00;FS=3.403;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.119;QD=23.57;ReadPosRankSum=1.675;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:1,242:244:99:5752,657,0 chrIV 1407369 . G A 4531.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.1381;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.12;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4531,498,0 chrIV 1407493 . C T 3091 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.03;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3124,354,0 chrIV 1407535 . A G 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.988;QD=21.76;ReadPosRankSum=1.655;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2970,339,0 chrIV 1407605 . T C 3675.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.14;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3675,423,0 chrIV 1407845 . C T 4524.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.3657;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=22.96;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4524,495,0 chrIV 1407899 . C T 5768.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=12.8670;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.93;SB=-2.963e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:5768,633,0 chrIV 1408247 . C T 4006.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=21.5568;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4006,447,0 chrIV 1408334 . C T 4079.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4079,447,0 chrIV 1408568 . T C 3957.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.1791;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.11;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3957,453,0 chrIV 1408755 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=20.60;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3082,333,0 chrIV 1408760 . T C 2662 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=18.49;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2695,315,0 chrIV 1408799 . A G 2098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.974;DP=148;Dels=0.00;FS=8.974;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=0.136;QD=14.18;ReadPosRankSum=3.376;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:4,144:148:99:2131,249,0 chrIV 1408802 . T C 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=147;Dels=0.00;FS=3.318;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=0.095;QD=15.42;ReadPosRankSum=1.708;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2300,264,0 chrIV 1409741 . C T 3814.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.62;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3814,423,0 chrIV 1409794 . A G 4661.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.1069;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4661,522,0 chrIV 1409847 . C T 5555.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=19.8590;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.34;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5555,612,0 chrIV 1410665 . C G 12192.01 filter AC=2;AF=1.00;AN=2;DP=548;Dels=0.00;FS=0.000;HaplotypeScore=37.4407;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=22.25;SB=-6.012e+03 GT:AD:DP:GQ:PL 1/1:0,544:548:99:12192,1392,0 chrIV 1411068 . A G 7255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=357;Dels=0.00;FS=2.563;HaplotypeScore=19.4322;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.816;QD=20.32;ReadPosRankSum=2.890;SB=-3.103e+03 GT:AD:DP:GQ:PL 1/1:3,352:357:99:7255,828,0 chrIV 1411151 . C T 6808.01 PASS AC=2;AF=1.00;AN=2;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=22.4165;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.96;SB=-2.900e+03 GT:AD:DP:GQ:PL 1/1:0,338:341:99:6808,733,0 chrIV 1411239 . G A 5894.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=6.2851;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=20.83;SB=-2.970e+03 GT:AD:DP:GQ:PL 1/1:0,283:283:99:5894,651,0 chrIV 1411263 . A G 4463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=244;Dels=0.00;FS=6.986;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;MQRankSum=-1.631;QD=18.29;ReadPosRankSum=2.429;SB=-2.783e+03 GT:AD:DP:GQ:PL 1/1:2,241:244:99:4463,513,0 chrIV 1411265 . C T 4495.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=18.50;SB=-2.783e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:4495,486,0 chrIV 1411311 . C G 43.97 filter AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=0.23;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:9:76,9,0 chrIV 1411324 . G A 2679 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.1278;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=12.64;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:2712,297,0 chrIV 1411351 . T C 3342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=211;Dels=0.00;FS=6.083;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=0.413;QD=15.84;ReadPosRankSum=2.368;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:3342,393,0 chrIV 1411563 . C T 3545.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=21.75;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3545,378,0 chrIV 1411661 . C T 2040 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;QD=14.27;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2073,225,0 chrIV 1411662 . C T 1983 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=13.58;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2016,222,0 chrIV 1411706 . A C 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=202;Dels=0.02;FS=5.441;HaplotypeScore=11.3086;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=-1.025;QD=16.56;ReadPosRankSum=1.714;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:3346,387,0 chrIV 1411737 . C T 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.831;QD=22.28;ReadPosRankSum=0.571;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3854,420,0 chrIV 1411821 . C T 3482.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=24.35;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3482,393,0 chrIV 1412047 . A G 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.5978;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-0.717;QD=22.42;ReadPosRankSum=1.712;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3924,456,0 chrIV 1414676 . A G 2902 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.22;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2935,330,0 chrIV 1414832 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.5940;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=24.68;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3800,414,0 chrIV 1414914 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.8397;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=0.359;QD=21.80;ReadPosRankSum=1.710;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3509,396,0 chrIV 1414935 . T C 3139 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.07;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3172,363,0 chrIV 1415006 . C T 3047 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.08;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3080,339,0 chrIV 1415045 . T C 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=4.240;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=-0.617;QD=19.52;ReadPosRankSum=1.661;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2902,330,0 chrIV 1415051 . G C 2846 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3459;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.04;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2879,330,0 chrIV 1415081 . T C 2831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=4.068;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-1.615;QD=19.13;ReadPosRankSum=1.685;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2864,327,0 chrIV 1415193 . A T 5161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=213;Dels=0.00;FS=9.920;HaplotypeScore=11.8052;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=2.102;QD=24.23;ReadPosRankSum=2.334;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:5161,567,0 chrIV 1415659 . C G 2871 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.65;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2904,327,0 chrIV 1416035 . T C 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=142;Dels=0.00;FS=11.259;HaplotypeScore=11.7467;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.964;QD=21.49;ReadPosRankSum=2.950;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:3,138:142:99:3084,348,0 chrIV 1416353 . A G 3708.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.3999;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.61;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3708,426,0 chrIV 1416431 . G A 3073 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.79;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3106,339,0 chrIV 1416436 . A G 2891 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.22;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2924,333,0 chrIV 1416545 . A C 3945.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.3553;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.92;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:3945,459,0 chrIV 1416560 . G A 4499.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.6791;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.84;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4499,483,0 chrIV 1416976 . G A 4166.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.77;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4166,468,0 chrIV 1417200 . T G 3460.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3460,396,0 chrIV 1417489 . C T 2961 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.77;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2994,327,0 chrIV 1417509 . T C 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=3.726;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.291;QD=20.09;ReadPosRankSum=1.677;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2544,300,0 chrIV 1417646 . C T 2956 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.46;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2989,324,0 chrIV 1418010 . G A 4082.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.01;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4082,462,0 chrIV 1418091 . G A 3545.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3545,402,0 chrIV 1418209 . C T 4115.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.73;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4115,441,0 chrIV 1418553 . G C 2043 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.70;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2076,237,0 chrIV 1418662 . T C 2474 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.8059;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=24.25;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2507,285,0 chrIV 1418907 . G A 4444.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.47;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4444,489,0 chrIV 1418910 . A T 4410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-1.039;QD=21.00;ReadPosRankSum=1.683;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4410,483,0 chrIV 1418937 . T C 4263.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.83;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4263,483,0 chrIV 1419138 . C A 3317.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.20;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3317,360,0 chrIV 1419231 . C T 3812.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=21.42;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3812,423,0 chrIV 1419258 . A G 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.607;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;MQRankSum=-1.127;QD=18.16;ReadPosRankSum=-0.376;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3047,335,0 chrIV 1419261 . A G 3084 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=19.04;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3117,354,0 chrIV 1419273 . G A 2933 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=19.82;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2966,321,0 chrIV 1419366 . G A 3893.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3893,420,0 chrIV 1419777 . C T 6882.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=23.6112;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.94;SB=-3.391e+03 GT:AD:DP:GQ:PL 1/1:0,300:300:99:6882,745,0 chrIV 1419978 . A G 6168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=316;Dels=0.00;FS=2.987;HaplotypeScore=19.3568;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=1.501;QD=19.52;ReadPosRankSum=2.363;SB=-3.441e+03 GT:AD:DP:GQ:PL 1/1:2,311:316:99:6168,725,0 chrIV 1419993 . T C 6232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=310;Dels=0.00;FS=9.906;HaplotypeScore=7.6948;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=2.153;QD=20.10;ReadPosRankSum=2.951;SB=-3.565e+03 GT:AD:DP:GQ:PL 1/1:3,306:310:99:6232,708,0 chrIV 1420155 . T C 5355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=258;Dels=0.00;FS=7.439;HaplotypeScore=16.5989;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.069;QD=20.76;ReadPosRankSum=2.411;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:2,254:258:99:5355,624,0 chrIV 1420288 . A G 4970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.316;DP=253;Dels=0.00;FS=5.097;HaplotypeScore=237.3513;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=1.608;QD=19.64;ReadPosRankSum=3.392;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:4,249:253:99:4970,567,0 chrIV 1420339 . A T 4537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.643;DP=229;Dels=0.00;FS=13.585;HaplotypeScore=22.7643;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-0.100;QD=19.81;ReadPosRankSum=4.735;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:9,220:229:99:4537,513,0 chrIV 1420445 . G A 8177.01 PASS AC=2;AF=1.00;AN=2;DP=358;Dels=0.00;FS=0.000;HaplotypeScore=12.5964;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.84;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,354:358:99:8177,956,0 chrIV 1420608 . A G 9497.01 filter AC=2;AF=1.00;AN=2;DP=463;Dels=0.00;FS=0.000;HaplotypeScore=19.1329;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.51;SB=-5.666e+03 GT:AD:DP:GQ:PL 1/1:0,462:463:99:9497,1086,0 chrIV 1420886 . A C 5731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.118;QD=18.61;ReadPosRankSum=1.709;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,307:308:99:5731,680,0 chrIV 1420941 . G A 5414.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=18.8695;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.82;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5414,597,0 chrIV 1421140 . C T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=25.04;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3381,375,0 chrIV 1421201 . T C 2909 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.63;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2942,336,0 chrIV 1421222 . C A 2803 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.20;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2836,321,0 chrIV 1421240 . C T 2964 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=20.03;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2997,339,0 chrIV 1421288 . T A 3131 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.8641;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=18.86;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3164,354,0 chrIV 1421307 . A G 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=0.089;QD=19.00;ReadPosRankSum=1.710;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2997,342,0 chrIV 1421325 . G T 3325.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.8470;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=19.91;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3325,360,0 chrIV 1421376 . T G 3417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=0.757;QD=19.53;ReadPosRankSum=1.712;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3417,393,0 chrIV 1421386 . G A 3650.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=20.39;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3650,402,0 chrIV 1421456 . G A 3773.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.19;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3773,414,0 chrIV 1421552 . G A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=21.86;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3389,372,0 chrIV 1421559 . A C 3138 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3620;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=20.78;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3171,360,0 chrIV 1421621 . T C 3515.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.3000;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=19.86;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3515,405,0 chrIV 1421744 . T C 4031.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.6487;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=23.57;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4031,459,0 chrIV 1421768 . T C 2886 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=19.63;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2919,333,0 chrIV 1421773 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=19.74;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2974,339,0 chrIV 1421784 . A C 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=3.394;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=-1.391;QD=18.43;ReadPosRankSum=1.708;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2650,300,0 chrIV 1421908 . A G 3947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.624;DP=188;Dels=0.00;FS=7.852;HaplotypeScore=8.5008;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.091;QD=20.99;ReadPosRankSum=3.732;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:5,183:188:99:3947,453,0 chrIV 1421954 . A C 2896 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.44;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2929,336,0 chrIV 1422001 . T C 2062 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.8600;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=16.63;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2095,243,0 chrIV 1422008 . C T 2269 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.7112;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=18.15;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2302,252,0 chrIV 1422082 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.17;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3181,345,0 chrIV 1422315 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.52;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2618,297,0 chrIV 1422615 . A G 2144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=91;Dels=0.00;FS=5.611;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.237;QD=23.56;ReadPosRankSum=1.656;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2177,246,0 chrIV 1422660 . T A 1711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.546;QD=22.81;ReadPosRankSum=1.685;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1744,201,0 chrIV 1422981 . T C 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=154;Dels=0.00;FS=2.829;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.168;QD=23.23;ReadPosRankSum=2.370;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3577,402,0 chrIV 1423119 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.7401;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.66;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2946,318,0 chrIV 1423134 . T C 2809 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=19.92;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2842,333,0 chrIV 1423497 . C T 3037 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.36;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3070,342,0 chrIV 1423605 . C T 3345.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=23.56;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3345,372,0 chrIV 1423651 . A G 2906 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=21.37;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2939,333,0 chrIV 1423668 . A G 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=121;Dels=0.00;FS=3.032;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.424;QD=20.69;ReadPosRankSum=2.408;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:2,117:121:99:2536,294,0 chrIV 1424169 . T G 2635 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.52;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2668,309,0 chrIV 1424265 . C A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3508,384,0 chrIV 1424583 . T C 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=4.298;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=0.720;QD=22.42;ReadPosRankSum=1.671;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2589,297,0 chrIV 1424601 . C T 2460 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=23.21;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2493,270,0 chrIV 1424628 . A T 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.408;QD=21.45;ReadPosRankSum=1.648;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2693,306,0 chrIV 1424689 . T A 2706 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.3394;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.13;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2739,300,0 chrIV 1424813 . G A 2570 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.92;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2603,294,0 chrIV 1424818 . A G 2592 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=19.79;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2625,303,0 chrIV 1424907 . C T 2443 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.81;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2476,276,0 chrIV 1424978 . T C 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=123;Dels=0.00;FS=12.322;HaplotypeScore=8.6343;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.661;QD=20.31;ReadPosRankSum=2.926;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:3,119:123:99:2531,288,0 chrIV 1425132 . A G 3579.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.55;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3579,405,0 chrIV 1425177 . G A 3317.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.1392;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.20;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3317,357,0 chrIV 1425346 . G T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=21.67;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3261,354,0 chrIV 1425361 . T C 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=4.155;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.723;QD=20.74;ReadPosRankSum=1.617;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3185,360,0 chrIV 1425476 . A G 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=3.375;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.620;QD=22.77;ReadPosRankSum=1.704;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2857,324,0 chrIV 1425592 . A G 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=157;Dels=0.00;FS=11.012;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-0.981;QD=22.61;ReadPosRankSum=2.455;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3549,396,0 chrIV 1425615 . G T 2955 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.19;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2988,327,0 chrIV 1425629 . C T 3080 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.78;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3113,351,0 chrIV 1425816 . C T 2809 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.4874;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=19.92;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2842,309,0 chrIV 1426123 . T C 3169 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3202,369,0 chrIV 1426822 . T C 5039.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.40;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5039,558,0 chrIV 1427031 . T A 5392.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=10.5383;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-2.968e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5392,588,0 chrIV 1427272 . T A 2566 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5011;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2599,291,0 chrIV 1427707 . A G 5448.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.03;SB=-2.903e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5448,636,0 chrIV 1428139 . A C 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=112;Dels=0.00;FS=2.582;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.282;QD=23.29;ReadPosRankSum=2.937;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:3,108:112:99:2642,294,0 chrIV 1428300 . G A 2057 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=18.04;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2090,231,0 chrIV 1428426 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.46;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3245,348,0 chrIV 1429008 . T G 3784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=213;Dels=0.00;FS=4.878;HaplotypeScore=23.7288;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.269;QD=17.77;ReadPosRankSum=1.715;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,205:213:99:3784,432,0 chrIV 1429094 . C G 3976.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=23.53;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3976,453,0 chrIV 1429122 . T C 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.626;DP=182;Dels=0.00;FS=2.579;HaplotypeScore=5.1947;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=-0.559;QD=16.35;ReadPosRankSum=2.559;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:3,177:182:99:3008,339,0 chrIV 1429123 . T C 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=181;Dels=0.00;FS=2.576;HaplotypeScore=4.4060;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;MQRankSum=-0.939;QD=16.57;ReadPosRankSum=2.372;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:3032,348,0 chrIV 1429245 . A G 7048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=314;Dels=0.00;FS=5.365;HaplotypeScore=16.3502;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.260;QD=22.45;ReadPosRankSum=1.677;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:1,312:314:99:7048,821,0 chrIV 1429599 . G A 5793.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=22.8836;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.62;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:0,279:281:99:5793,645,0 chrIV 1429749 . C G 5717.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=18.2860;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.85;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:0,276:288:99:5717,677,0 chrIV 1429800 . A C 6080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=14.9947;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.029;QD=19.93;ReadPosRankSum=1.215;SB=-3.496e+03 GT:AD:DP:GQ:PL 1/1:2,302:305:99:6080,716,0 chrIV 1429971 . C G 7869.01 filter AC=2;AF=1.00;AN=2;DP=371;Dels=0.00;FS=0.000;HaplotypeScore=27.4120;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.21;SB=-4.249e+03 GT:AD:DP:GQ:PL 1/1:0,364:371:99:7869,903,0 chrIV 1430016 . C T 8719.01 filter AC=2;AF=1.00;AN=2;DP=365;Dels=0.00;FS=0.000;HaplotypeScore=21.0508;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.89;SB=-4.049e+03 GT:AD:DP:GQ:PL 1/1:0,364:365:99:8719,931,0 chrIV 1430075 . A G 5827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.121;DP=307;Dels=0.00;FS=9.036;HaplotypeScore=27.4284;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.439;QD=18.98;ReadPosRankSum=3.382;SB=-3.509e+03 GT:AD:DP:GQ:PL 1/1:4,303:307:99:5827,669,0 chrIV 1430241 . C T 5425.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=15.1170;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.94;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:0,270:272:99:5425,591,0 chrIV 1430249 . G T 5589.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=20.70;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:0,267:270:99:5589,609,0 chrIV 1430342 . T C 5767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=281;Dels=0.00;FS=2.999;HaplotypeScore=18.7445;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.331;QD=20.52;ReadPosRankSum=2.414;SB=-3.235e+03 GT:AD:DP:GQ:PL 1/1:2,276:281:99:5767,654,0 chrIV 1430376 . T C 4175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=243;Dels=0.00;FS=3.777;HaplotypeScore=12.0765;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.841;QD=17.18;ReadPosRankSum=1.689;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:4175,492,0 chrIV 1430401 . G T 4249.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=9.8671;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=18.00;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:4249,471,0 chrIV 1430445 . T A 4681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=244;Dels=0.00;FS=3.192;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-1.008;QD=19.18;ReadPosRankSum=1.704;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:1,243:244:99:4681,522,0 chrIV 1430469 . A G 5146.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=2.2100;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=20.18;SB=-3.154e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5146,591,0 chrIV 1430493 . A G 4284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=261;Dels=0.00;FS=5.886;HaplotypeScore=6.9162;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=-0.454;QD=16.41;ReadPosRankSum=2.950;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:3,256:261:99:4284,498,0 chrIV 1430496 . G T 4373.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=4.4434;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=16.95;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:4373,495,0 chrIV 1430819 . G A 4066.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=19.27;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4066,438,0 chrIV 1430837 . A G 4183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=1.260;QD=18.93;ReadPosRankSum=1.701;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:4183,474,0 chrIV 1430890 . A T 4118.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=18.9404;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.90;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4118,444,0 chrIV 1431080 . G T 3345.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.15;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3345,372,0 chrIV 1431588 . C T 5274.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.6105;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.97;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5274,573,0 chrIV 1431866 . G A 3284.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.63;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3284,360,0 chrIV 1432139 . A G 1595 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.99;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1628,186,0 chrIV 1432209 . T C 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=3.032;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.331;QD=21.80;ReadPosRankSum=2.401;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3314,372,0 chrIV 1432285 . G C 2455 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.54;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2488,282,0 chrIV 1432429 . A G 4121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=183;Dels=0.00;FS=7.218;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.584;QD=22.52;ReadPosRankSum=2.423;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4121,483,0 chrIV 1432487 . A T 4867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=205;Dels=0.00;FS=9.332;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.752;QD=23.74;ReadPosRankSum=2.353;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4867,540,0 chrIV 1432529 . C A 5011.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.68;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5011,538,0 chrIV 1432790 . G A 4147.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.30;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4147,477,0 chrIV 1433104 . G C 3680.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.5465;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.52;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3680,429,0 chrIV 1433144 . A C 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=153;Dels=0.00;FS=2.970;HaplotypeScore=6.5146;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.115;QD=23.44;ReadPosRankSum=2.401;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:3587,405,0 chrIV 1433351 . A G 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.037;QD=21.33;ReadPosRankSum=1.683;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3041,354,0 chrIV 1433458 . C A 3973.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=24.23;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3973,423,0 chrIV 1433591 . T C 3579.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.37;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3579,411,0 chrIV 1433693 . A G 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.7598;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.837;QD=19.32;ReadPosRankSum=1.699;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:1,208:211:99:4077,468,0 chrIV 1433710 . A T 4235.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.4576;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.07;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4235,462,0 chrIV 1433930 . T C 5491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=251;Dels=0.00;FS=2.691;HaplotypeScore=11.9589;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.298;QD=21.88;ReadPosRankSum=2.430;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:2,249:251:99:5491,618,0 chrIV 1434291 . T G 5529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=244;Dels=0.00;FS=8.336;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.188;QD=22.66;ReadPosRankSum=2.429;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:2,240:244:99:5529,630,0 chrIV 1434364 . A G 4893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=222;Dels=0.00;FS=2.537;HaplotypeScore=14.0043;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.317;QD=22.04;ReadPosRankSum=2.914;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:3,219:222:99:4893,561,0 chrIV 1434587 . C G 2785 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,124:130:99:2818,318,0 chrIV 1434729 . C T 3371.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.75;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3371,363,0 chrIV 1434754 . C G 3133 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.31;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,142:147:99:3166,360,0 chrIV 1434785 . A T 3092 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.9676;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.60;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3125,348,0 chrIV 1435041 . C T 3441.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.90;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3441,375,0 chrIV 1435238 . T C 4170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.2051;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.547;QD=21.83;ReadPosRankSum=1.714;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4170,468,0 chrIV 1435454 . C T 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.950;QD=22.05;ReadPosRankSum=-1.713;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4189,462,0 chrIV 1435524 . G A 3977.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.0914;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.15;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3977,450,0 chrIV 1435565 . T C 3892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=187;Dels=0.00;FS=3.323;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.639;QD=20.81;ReadPosRankSum=1.695;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3892,441,0 chrIV 1435664 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3278,375,0 chrIV 1435712 . A T 3016 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.80;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3049,345,0 chrIV 1436292 . G A 4126.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.85;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4126,468,0 chrIV 1436677 . T C 4672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.9491;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=-1.684;QD=21.63;ReadPosRankSum=1.700;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4672,549,0 chrIV 1436883 . T C 3650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=27.2622;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=0.302;QD=20.39;ReadPosRankSum=2.420;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:2,173:179:99:3650,414,0 chrIV 1437136 . A G 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=178;Dels=0.00;FS=3.008;HaplotypeScore=12.9779;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.815;QD=23.16;ReadPosRankSum=2.394;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4122,471,0 chrIV 1437254 . G T 3391.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3391,369,0 chrIV 1437433 . T C 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=123;Dels=0.00;FS=9.582;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.810;QD=22.42;ReadPosRankSum=2.943;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:3,119:123:99:2791,315,0 chrIV 1437517 . C T 2695 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.84;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2728,306,0 chrIV 1437568 . T C 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=128;Dels=0.00;FS=3.045;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.796;QD=20.80;ReadPosRankSum=2.411;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2696,315,0 chrIV 1437602 . T C 2807 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2840,321,0 chrIV 1437691 . C T 2216 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.31;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2249,252,0 chrIV 1437787 . C T 2967 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.93;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3000,324,0 chrIV 1437886 . G A 3205.99 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3239,366,0 chrIV 1438524 . G C 2605 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2638,300,0 chrIV 1438949 . G A 2320 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.10;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2353,264,0 chrIV 1438982 . A C 2535 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.47;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2568,288,0 chrIV 1441551 . G A 3056 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.98;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3089,342,0 chrIV 1441815 . T C 3154 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3187,363,0 chrIV 1442725 . T C 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.773;DP=166;Dels=0.00;FS=5.676;HaplotypeScore=12.8603;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.884;QD=21.55;ReadPosRankSum=2.957;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:3,161:166:99:3578,399,0 chrIV 1443134 . T C 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=173;Dels=0.00;FS=2.706;HaplotypeScore=9.6475;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.121;QD=21.80;ReadPosRankSum=2.392;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:3771,438,0 chrIV 1443515 . A T 1044 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=9.4293;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=15.58;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1077,117,0 chrIV 1443643 . A T 99.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=80;Dels=0.01;FS=8.502;HaplotypeScore=62.2921;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.421;QD=1.24;ReadPosRankSum=2.294;SB=-7.743e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:15:132,15,0 chrIV 1444544 . C T 4116.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4116,459,0 chrIV 1445581 . A G 4484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=206;Dels=0.00;FS=2.853;HaplotypeScore=10.4741;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.602;QD=21.77;ReadPosRankSum=2.426;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4484,504,0 chrIV 1445657 . C A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=21.4792;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3665,402,0 chrIV 1446020 . T C 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=4.400;HaplotypeScore=16.2452;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.010;QD=20.15;ReadPosRankSum=1.670;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3386,399,0 chrIV 1446193 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.012;QD=21.16;ReadPosRankSum=0.965;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3249,375,0 chrIV 1446428 . C T 4258.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.5953;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.02;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4258,468,0 chrIV 1446900 . C T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.9781;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.64;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3310,354,0 chrIV 1447014 . G A 3144 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=23.46;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3177,345,0 chrIV 1447053 . G A 3113 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=21.77;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3146,348,0 chrIV 1447054 . T C 3063 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=21.57;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3096,348,0 chrIV 1447111 . T C 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-1.381;QD=19.61;ReadPosRankSum=1.707;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2759,315,0 chrIV 1447149 . C T 2881 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=20.58;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2914,327,0 chrIV 1447195 . G A 2318 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=0;QD=17.17;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2351,249,0 chrIV 1447201 . G A 1875 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.16;MQ0=0;QD=13.59;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1908,207,0 chrIV 1447213 . C T 1763 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.31;MQ0=0;QD=13.26;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1796,204,0 chrIV 1447216 . T G 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=3.034;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;MQRankSum=-2.218;QD=13.17;ReadPosRankSum=2.414;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:1850,213,0 chrIV 1447231 . G A 1880 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.26;MQ0=0;QD=14.03;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:1913,207,0 chrIV 1447296 . A G 2572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.076;HaplotypeScore=10.4538;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;MQRankSum=0.078;QD=19.19;ReadPosRankSum=1.680;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2605,297,0 chrIV 1447297 . T A 2711 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=20.38;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2744,300,0 chrIV 1447307 . C G 2653 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=13.1755;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=18.82;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2686,312,0 chrIV 1447313 . C T 2722 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=19.87;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2755,300,0 chrIV 1447673 . A G 1293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=4.901;HaplotypeScore=10.3111;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.204;QD=18.74;ReadPosRankSum=1.630;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1326,153,0 chrIV 1447827 . T C 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=0.357;QD=20.34;ReadPosRankSum=1.707;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2819,321,0 chrIV 1447837 . G A 2876 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4604;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.54;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2909,321,0 chrIV 1447943 . A T 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=139;Dels=0.00;FS=8.764;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.999;QD=22.86;ReadPosRankSum=2.220;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3211,348,0 chrIV 1447962 . A G 3120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=4.508;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=0.192;QD=21.52;ReadPosRankSum=1.684;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3153,360,0 chrIV 1447991 . C T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.31;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3665,405,0 chrIV 1448948 . A G 3309.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.0631;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3309,375,0 chrIV 1448987 . T A 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=149;Dels=0.00;FS=9.855;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.116;QD=22.33;ReadPosRankSum=2.830;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3327,363,0 chrIV 1450068 . C T 2116 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.95;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2149,234,0 chrIV 1450091 . G A 1767 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.55;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1800,195,0 chrIV 1450588 . C A 2990 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.76;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3023,345,0 chrIV 1450675 . C A 3159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=145;Dels=0.00;FS=3.165;HaplotypeScore=9.7217;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-0.327;QD=21.79;ReadPosRankSum=0.206;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3192,348,0 chrIV 1450699 . T C 2811 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=21.96;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2844,324,0 chrIV 1450720 . G A 2992 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.00;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3025,330,0 chrIV 1450764 . A G 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.0776;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.448;QD=20.88;ReadPosRankSum=1.659;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,142:146:99:3082,357,0 chrIV 1450812 . A G 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.810;QD=22.27;ReadPosRankSum=1.707;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3128,357,0 chrIV 1450894 . C T 2610 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.57;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,117:121:99:2643,294,0 chrIV 1450914 . T C 2401 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.06;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2434,279,0 chrIV 1450937 . G T 1964 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.19;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1997,219,0 chrIV 1450998 . G A 1373 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.3052;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=14.15;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1406,150,0 chrIV 1451009 . A T 1410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=0.838;QD=15.16;ReadPosRankSum=1.695;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1443,159,0 chrIV 1451054 . C T 1453 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=18.16;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1486,165,0 chrIV 1451097 . A C 1545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.472;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.650;QD=19.07;ReadPosRankSum=1.689;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1578,180,0 chrIV 1451554 . C G 3369.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=19.47;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3369,384,0 chrIV 1451566 . A G 3304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.376;DP=171;Dels=0.00;FS=8.704;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=1.062;QD=19.32;ReadPosRankSum=3.376;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:4,163:171:99:3304,372,0 chrIV 1451882 . T C 2759 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.39;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2792,321,0 chrIV 1452282 . C T 2929 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.7979;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.06;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2962,327,0 chrIV 1453147 . T C 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.165;QD=22.86;ReadPosRankSum=1.691;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1953,219,0 chrIV 1453234 . T A 2971 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3004,324,0 chrIV 1454207 . C T 5682.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=15.2792;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.85;SB=-2.974e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5682,627,0 chrIV 1454435 . G T 3762.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.26;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3762,417,0 chrIV 1454553 . A G 2728 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=13.6021;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2761,312,0 chrIV 1454951 . A G 2491 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2524,288,0 chrIV 1455133 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=145;Dels=0.00;FS=4.180;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.457;QD=23.37;ReadPosRankSum=1.660;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3389,384,0 chrIV 1455219 . A G 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=179;Dels=0.00;FS=3.008;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.145;QD=22.21;ReadPosRankSum=2.381;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3975,447,0 chrIV 1455507 . A G 4109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;DP=177;Dels=0.00;FS=17.463;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.314;QD=23.21;ReadPosRankSum=3.390;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:4,171:177:99:4109,465,0 chrIV 1455570 . T C 4323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.961;DP=183;Dels=0.00;FS=2.581;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.117;QD=23.62;ReadPosRankSum=2.961;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:3,178:183:99:4323,492,0 chrIV 1455678 . G T 4056.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=22.16;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4056,459,0 chrIV 1455696 . A G 4329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=201;Dels=0.00;FS=2.929;HaplotypeScore=5.5568;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-1.741;QD=21.54;ReadPosRankSum=2.425;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4329,495,0 chrIV 1455744 . C T 4254.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=21.06;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4254,459,0 chrIV 1455747 . A G 4087.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=19.94;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4087,471,0 chrIV 1460721 . A G 2768 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.80;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2801,315,0 chrIV 1460832 . T C 3014 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.68;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3047,345,0 chrIV 1460915 . C T 3524.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.74;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3524,390,0 chrIV 1460953 . G A 4418.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.5355;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=25.10;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4418,486,0 chrIV 1460979 . T C 4262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=189;Dels=0.00;FS=2.820;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.966;QD=22.55;ReadPosRankSum=2.410;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4262,477,0 chrIV 1461955 . T C 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=3.691;HaplotypeScore=6.8514;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.230;QD=22.91;ReadPosRankSum=1.679;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3034,345,0 chrIV 1464658 . C T 3204.99 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.57;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3238,348,0 chrIV 1465889 . A C 5220.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=237;Dels=0.00;FS=2.564;HaplotypeScore=12.2338;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=2.064;QD=22.03;ReadPosRankSum=2.920;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:3,234:237:99:5220,614,0 chrIV 1466633 . T C 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.061;QD=23.60;ReadPosRankSum=1.702;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2723,309,0 chrIV 1467059 . C T 9804.01 filter AC=2;AF=1.00;AN=2;DP=412;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.80;SB=-5.418e+03 GT:AD:DP:GQ:PL 1/1:0,411:412:99:9804,1075,0 chrIV 1467631 . C G 4839.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.3879;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.00;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4839,558,0 chrIV 1468321 . G C 2223 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.58;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2256,255,0 chrIV 1468381 . G C 1898 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1931,219,0 chrIV 1468562 . G A 2037 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.7671;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=19.22;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2070,225,0 chrIV 1468639 . G T 1982 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.88;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2015,219,0 chrIV 1468750 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=149;Dels=0.00;FS=2.554;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.209;QD=21.70;ReadPosRankSum=2.899;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3268,372,0 chrIV 1469010 . G A 4996.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.0878;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.20;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4996,540,0 chrIV 1469093 . A T 4050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.784;DP=193;Dels=0.00;FS=17.673;HaplotypeScore=17.7720;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.254;QD=20.98;ReadPosRankSum=2.344;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:7,186:193:99:4050,443,0 chrIV 1469161 . A G 4146.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.2593;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.66;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4146,474,0 chrIV 1469888 . C T 3568.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.6231;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3568,393,0 chrIV 1473860 . C A 3811.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3811,423,0 chrIV 1473919 . A G 3682.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.4028;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.07;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3682,414,0 chrIV 1474139 . A C 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.946;QD=20.94;ReadPosRankSum=2.385;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3216,363,0 chrIV 1474473 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2492,273,0 chrIV 1474567 . C T 2683 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1633;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.33;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2716,297,0 chrIV 1476956 . C A 4462.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=19.8819;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=20.75;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:2,208:215:99:4462,486,0 chrIV 1477056 . G A 4458.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.0534;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.33;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,205:209:99:4458,504,0 chrIV 1477116 . A G 4118.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=197;Dels=0.00;FS=4.035;HaplotypeScore=11.1044;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.217;QD=20.90;ReadPosRankSum=1.714;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4118,468,0 chrIV 1477174 . T A 4523.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=22.73;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4523,501,0 chrIV 1477202 . G A 3615.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=19.33;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3615,396,0 chrIV 1477205 . A G 3394.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=18.25;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:3394,393,0 chrIV 1477216 . A T 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=-1.375;QD=17.71;ReadPosRankSum=1.690;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2973,336,0 chrIV 1477505 . T C 5474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.665;DP=249;Dels=0.00;FS=7.968;HaplotypeScore=17.6972;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.628;QD=21.98;ReadPosRankSum=3.791;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:5,242:249:99:5474,621,0 chrIV 1478891 . G A 3346.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=18.3575;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.76;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3346,363,0 chrIV 1478931 . C T 3207 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.9680;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.43;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3240,357,0 chrIV 1479318 . A G 3812.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=22.56;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3812,438,0 chrIV 1479403 . G A 3878.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4894;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.03;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3878,435,0 chrIV 1479762 . T C 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.021;DP=201;Dels=0.00;FS=15.166;HaplotypeScore=21.4860;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.382;QD=19.41;ReadPosRankSum=3.399;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:4,195:201:99:3902,459,0 chrIV 1479981 . T C 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=161;Dels=0.00;FS=6.903;HaplotypeScore=10.4799;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.229;QD=22.15;ReadPosRankSum=2.419;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3566,402,0 chrIV 1480113 . C T 3405.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.81;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3405,387,0 chrIV 1480146 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.82;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3264,375,0 chrIV 1480271 . C A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.11;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3281,363,0 chrIV 1480428 . A T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.82;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3260,354,0 chrIV 1481082 . A T 2005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=4.825;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.422;QD=24.45;ReadPosRankSum=1.648;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:2038,222,0 chrIV 1481130 . G A 2168 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2201,237,0 chrIV 1481376 . A G 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.740;DP=144;Dels=0.00;FS=11.225;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.725;QD=21.94;ReadPosRankSum=1.402;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:3193,366,0 chrIV 1481613 . A C 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.326;DP=137;Dels=0.00;FS=6.975;HaplotypeScore=14.7554;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=1.598;QD=19.31;ReadPosRankSum=4.169;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:7,130:137:99:2679,309,0 chrIV 1481614 . T A 2657 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.03;FS=0.000;HaplotypeScore=13.2328;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.54;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2690,300,0 chrIV 1481898 . A G 3055 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.63;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3088,348,0 chrIV 1483110 . C T 3574.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.67;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3574,390,0 chrIV 1483336 . T C 3155 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.91;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3188,363,0 chrIV 1483478 . C T 3460.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.04;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3460,387,0 chrIV 1483674 . T A 3050 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.40;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3083,345,0 chrIV 1483791 . T C 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=134;Dels=0.00;FS=3.008;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.037;QD=23.00;ReadPosRankSum=2.413;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3115,363,0 chrIV 1484202 . A G 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=15.0854;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.135;QD=22.11;ReadPosRankSum=1.708;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3151,354,0 chrIV 1484273 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2694,291,0 chrIV 1484368 . T C 3522.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3522,396,0 chrIV 1484422 . A G 2527 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2560,291,0 chrIV 1484557 . A G 3098 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3131,348,0 chrIV 1485012 . G T 3160 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.25;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3193,345,0 chrIV 1485530 . T A 1100 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.37;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1133,126,0 chrIV 1485816 . T G 3515.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.9062;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.11;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3515,393,0 chrIV 1486166 . C T 3057 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.81;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3090,336,0 chrIV 1486183 . G A 2834 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.97;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2867,312,0 chrIV 1487095 . T A 3360.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.07;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3360,360,0 chrIV 1487442 . C G 1997 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=19.02;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2030,237,0 chrIV 1487709 . A T 2451 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.91;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2484,273,0 chrIV 1488436 . C T 4793.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.7887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.21;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4793,516,0 chrIV 1488682 . C T 5056.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.9470;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.67;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5056,564,0 chrIV 1488790 . A G 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.410;DP=176;Dels=0.00;FS=8.628;HaplotypeScore=10.7732;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.223;QD=20.49;ReadPosRankSum=3.370;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:4,172:176:99:3606,420,0 chrIV 1488814 . A G 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.6460;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.311;QD=20.81;ReadPosRankSum=1.693;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:3746,435,0 chrIV 1488904 . C T 3652.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=14.2770;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.41;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3652,390,0 chrIV 1488951 . G A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.66;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3526,381,0 chrIV 1489245 . C T 1555 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.68;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1588,177,0 chrIV 1489277 . T A 1315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=68;Dels=0.00;FS=7.186;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.376;QD=19.34;ReadPosRankSum=1.630;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1348,150,0 chrIV 1489884 . T C 3436.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.5071;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.21;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3436,393,0 chrIV 1490124 . C T 3453.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.5432;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3453,378,0 chrIV 1490523 . A C 3964.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.92;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3964,462,0 chrIV 1491138 . T C 2512 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.11;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2545,297,0 chrIV 1491161 . C A 3074 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.96;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3107,333,0 chrIV 1491553 . C T 4734.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.3380;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4734,519,0 chrIV 1491605 . T A 4558.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.90;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4558,498,0 chrIV 1491810 . A G 3435.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.60;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3435,393,0 chrIV 1491852 . A G 3982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=3.797;HaplotypeScore=12.3374;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.129;QD=22.63;ReadPosRankSum=1.673;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3982,456,0 chrIV 1491889 . G A 4346.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.24;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4346,486,0 chrIV 1491938 . A T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.3216;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.27;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4375,474,0 chrIV 1492309 . T G 3328.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6056;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.06;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3328,387,0 chrIV 1492426 . A G 2627 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=123.4364;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=19.18;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2660,300,0 chrIV 1492587 . C T 2606 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.5697;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.85;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2639,297,0 chrIV 1493450 . A C 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7927;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.888;QD=22.62;ReadPosRankSum=1.703;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2725,309,0 chrIV 1493904 . C A 3992.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.81;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3992,450,0 chrIV 1493916 . T C 3897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=0.829;QD=20.73;ReadPosRankSum=1.658;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3897,444,0 chrIV 1493956 . C T 4067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.926;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.5760;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.681;QD=19.94;ReadPosRankSum=0.669;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4067,453,0 chrIV 1494025 . C T 5210.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.8489;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.46;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5210,553,0 chrIV 1494761 . C T 3985.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3985,444,0 chrIV 1495550 . G A 4064.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.58;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4064,468,0 chrIV 1495579 . G A 3705.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.9092;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=22.87;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3705,417,0 chrIV 1495580 . C A 3845.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.7413;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=23.88;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3845,414,0 chrIV 1495686 . C A 2598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=112;Dels=0.00;FS=3.680;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.217;QD=23.20;ReadPosRankSum=-0.371;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2631,288,0 chrIV 1495755 . T C 2984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=139;Dels=0.00;FS=12.718;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.993;QD=21.47;ReadPosRankSum=2.935;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3017,342,0 chrIV 1496599 . G A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3795,420,0 chrIV 1496692 . C T 3020 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.87;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3053,336,0 chrIV 1496693 . G T 2831 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.62;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2864,321,0 chrIV 1496944 . G A 5055.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.9747;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.98;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5055,573,0 chrIV 1497115 . A G 4917.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.38;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4917,555,0 chrIV 1497133 . A T 5715.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=8.6578;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.48;SB=-3.137e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:5715,636,0 chrIV 1497214 . G A 6564.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=11.6748;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.33;SB=-3.232e+03 GT:AD:DP:GQ:PL 1/1:0,294:294:99:6564,709,0 chrIV 1497259 . T A 5416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=237;Dels=0.00;FS=3.979;HaplotypeScore=14.8075;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.614;QD=22.85;ReadPosRankSum=1.644;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:5416,586,0 chrIV 1497552 . C T 4300.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.3884;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=20.28;SB=-2.705e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4300,471,0 chrIV 1497589 . G A 4040.01 SnpCluster AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=18.12;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4040,444,0 chrIV 1497594 . T C 3742.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=218;Dels=0.00;FS=7.869;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;MQRankSum=-1.069;QD=17.17;ReadPosRankSum=2.404;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:2,215:218:99:3742,426,0 chrIV 1497598 . G T 3569.01 SnpCluster AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=16.08;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:3569,387,0 chrIV 1497628 . A G 3054 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.4043;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=15.82;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:3087,354,0 chrIV 1497890 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.47;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3708,396,0 chrIV 1498087 . C G 2732 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=17.86;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2765,315,0 chrIV 1498188 . A G 3736.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=24.26;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3736,420,0 chrIV 1498235 . C T 3932.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=26.21;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3932,423,0 chrIV 1498969 . G C 2526 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.55;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2559,291,0 chrIV 1499328 . G A 2322 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.02;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2355,255,0 chrIV 1499347 . T C 2298 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=5.8931;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.15;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2331,270,0 chrIV 1499596 . T C 2401 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.44;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2434,279,0 chrIV 1499918 . T C 2470 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2503,282,0 chrIV 1500051 . C T 2030 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.71;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2063,225,0 chrIV 1500134 . C T 2489 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2522,276,0 chrIV 1500241 . A G 2707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=121;Dels=0.00;FS=14.097;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.483;QD=22.37;ReadPosRankSum=2.805;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:3,116:121:99:2740,309,0 chrIV 1500636 . G T 3003 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.24;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3036,333,0 chrIV 1500737 . A G 2086 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=19.50;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2119,240,0 chrIV 1500757 . A G 1783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;MQRankSum=-0.696;QD=16.66;ReadPosRankSum=1.635;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1816,204,0 chrIV 1500762 . G T 1547 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=16.82;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1580,171,0 chrIV 1500945 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=24.51;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2803,303,0 chrIV 1501082 . T C 1943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=120;Dels=0.00;FS=2.926;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=1.117;QD=16.19;ReadPosRankSum=2.368;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:1976,234,0 chrIV 1501093 . A G 1948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.378;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=0.796;QD=17.24;ReadPosRankSum=1.701;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:1981,228,0 chrIV 1501186 . C G 3095 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.0878;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.49;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3128,354,0 chrIV 1501442 . T G 2822 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5134;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.30;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2855,327,0 chrIV 1501453 . T C 2780 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.44;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2813,318,0 chrIV 1502195 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.45;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2991,324,0 chrIV 1502294 . T G 1847 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.5749;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.24;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1880,213,0 chrIV 1502362 . G A 2340 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.35;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2373,267,0 chrIV 1502377 . G A 2406 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.29;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2439,279,0 chrIV 1502666 . T C 2234 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=18.77;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2267,255,0 chrIV 1503885 . A G 1865.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.862;DP=182;Dels=0.01;FS=1.194;HaplotypeScore=7.4199;MLEAC=1;MLEAF=0.500;MQ=46.87;MQ0=0;MQRankSum=6.216;QD=10.25;ReadPosRankSum=6.413;SB=-9.080e+02 GT:AD:DP:GQ:PL 0/1:70,110:180:99:1895,0,273 chrIV 1503887 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.01;FS=0.000;HaplotypeScore=6.6312;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=15.65;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2787,309,0 chrIV 1503903 . G A 1358.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.620;DP=183;Dels=0.00;FS=2.617;HaplotypeScore=4.1792;MLEAC=1;MLEAF=0.500;MQ=43.07;MQ0=0;MQRankSum=7.082;QD=7.42;ReadPosRankSum=-3.729;SB=-5.430e+02 GT:AD:DP:GQ:PL 0/1:105,78:183:99:1388,0,575 chrIV 1503921 . G A 913.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.066;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=49.5696;MLEAC=1;MLEAF=0.500;MQ=42.98;MQ0=0;MQRankSum=-5.262;QD=5.57;ReadPosRankSum=8.237;SB=-1.051e+03 GT:AD:DP:GQ:PL 0/1:44,118:164:99:943,0,543 chrIV 1503929 . A G 306.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.217;DP=169;Dels=0.00;FS=5.168;HaplotypeScore=108.7873;MLEAC=1;MLEAF=0.500;MQ=40.99;MQ0=0;MQRankSum=1.832;QD=1.81;ReadPosRankSum=-2.357;SB=-1.120e+02 GT:AD:DP:GQ:PL 0/1:120,49:169:99:336,0,1072 chrIV 1503930 . G A 519.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.816;DP=174;Dels=0.00;FS=2.680;HaplotypeScore=112.9684;MLEAC=1;MLEAF=0.500;MQ=41.27;MQ0=0;MQRankSum=-4.153;QD=2.98;ReadPosRankSum=7.883;SB=-7.330e+02 GT:AD:DP:GQ:PL 0/1:89,84:174:99:549,0,921 chrIV 1503933 . G A 263.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.209;DP=170;Dels=0.00;FS=2.439;HaplotypeScore=107.2468;MLEAC=1;MLEAF=0.500;MQ=39.88;MQ0=0;MQRankSum=2.508;QD=1.55;ReadPosRankSum=-6.417;SB=-1.700e+02 GT:AD:DP:GQ:PL 0/1:134,36:170:99:293,0,1040 chrIV 1503939 . A G 160.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.887;DP=194;Dels=0.00;FS=4.275;HaplotypeScore=117.5766;MLEAC=1;MLEAF=0.500;MQ=40.41;MQ0=0;MQRankSum=-0.134;QD=0.82;ReadPosRankSum=1.136;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:152,41:194:99:190,0,1343 chrIV 1503957 . A G 1071.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.222;DP=234;Dels=0.00;FS=9.617;HaplotypeScore=65.3566;MLEAC=1;MLEAF=0.500;MQ=42.02;MQ0=0;MQRankSum=-2.050;QD=4.58;ReadPosRankSum=2.809;SB=-8.420e+02 GT:AD:DP:GQ:PL 0/1:102,132:234:99:1101,0,903 chrIV 1503960 . G T 172.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.592;DP=235;Dels=0.00;FS=2.693;HaplotypeScore=67.1626;MLEAC=1;MLEAF=0.500;MQ=42.59;MQ0=0;MQRankSum=-3.101;QD=0.73;ReadPosRankSum=-6.444;SB=-2.030e+02 GT:AD:DP:GQ:PL 0/1:177,58:235:99:202,0,1888 chrIV 1503965 . G A 1120.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=9.587;DP=237;Dels=0.00;FS=19.153;HaplotypeScore=59.7021;MLEAC=1;MLEAF=0.500;MQ=43.64;MQ0=0;MQRankSum=1.511;QD=4.73;ReadPosRankSum=-2.004;SB=-9.140e+02 GT:AD:DP:GQ:PL 0/1:118,119:237:99:1150,0,1004 chrIV 1503966 . G A 1048.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.598;DP=233;Dels=0.00;FS=10.821;HaplotypeScore=54.9058;MLEAC=1;MLEAF=0.500;MQ=43.99;MQ0=0;MQRankSum=1.930;QD=4.50;ReadPosRankSum=-3.111;SB=-9.200e+02 GT:AD:DP:GQ:PL 0/1:114,115:233:99:1078,0,1074 chrIV 1503996 . G T 2693.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.693;DP=258;Dels=0.00;FS=5.018;HaplotypeScore=20.5224;MLEAC=1;MLEAF=0.500;MQ=47.34;MQ0=0;MQRankSum=0.783;QD=10.44;ReadPosRankSum=2.557;SB=-1.857e+03 GT:AD:DP:GQ:PL 0/1:68,190:258:99:2723,0,499 chrIV 1504222 . T C 3704.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=35.36;MQ0=0;QD=20.24;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3704,417,0 chrIV 1504251 . A T 2081 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.711;DP=101;Dels=0.00;FS=5.670;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=0;MQRankSum=-1.490;QD=20.60;ReadPosRankSum=2.591;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:3,98:101:99:2114,225,0 chrIV 1504253 . T A 1997 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.21;MQ0=0;QD=21.24;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2030,222,0 chrIV 1504255 . G C 1775 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.428;DP=91;Dels=0.00;FS=16.580;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.06;MQ0=0;MQRankSum=-1.732;QD=19.51;ReadPosRankSum=1.656;SB=-1.901e+01 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1808,216,0 chrIV 1504256 . A G 1778 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=0;QD=19.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1811,207,0 chrIV 1504258 . A C 1820 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1853,213,0 chrIV 1504260 . G A 1899 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1932,213,0 chrIV 1504264 . C A 1926 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1959,213,0 chrIV 1504271 . G A 14.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.736;QD=4.74;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:1,2:3:17:44,0,17 chrIV 1504272 . A G 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:77,9,0 chrIV 1504274 . A G 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:77,9,0 chrIV 1504276 . T C 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:70,9,0 chrIV 1504520 . T A 58.51 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.44;MQ0=0;QD=0.82;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,71:71:12:91,12,0 chrIV 1504541 . A G 126.06 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=15.28;MQ0=0;QD=1.21;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,104:104:21:159,21,0 chrIV 1504598 . G A 707 filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=21.22;MQ0=0;QD=5.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,133:133:90:740,90,0 chrIV 1504616 . C T 867 filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=0;QD=6.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:900,99,0 chrIV 1504655 . C T 1078 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=89.1804;MLEAC=2;MLEAF=1.00;MQ=29.70;MQ0=0;QD=7.38;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1111,120,0 chrIV 1504659 . A G 1157 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=90.1405;MLEAC=2;MLEAF=1.00;MQ=30.59;MQ0=0;QD=7.46;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,153:155:99:1190,135,0 chrIV 1504663 . T C 1191 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.7082;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=0;MQRankSum=-2.435;QD=7.31;ReadPosRankSum=2.299;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:2,161:163:99:1224,141,0 chrIV 1504951 . C G 3721.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.85;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3721,426,0 chrIV 1505063 . A G 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=4.051;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.114;QD=23.07;ReadPosRankSum=1.590;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2871,324,0 chrIV 1505138 . T A 3688.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3688,399,0 chrIV 1505716 . T C 2970 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.67;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3003,342,0 chrIV 1506240 . A G 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.509;DP=126;Dels=0.00;FS=4.500;HaplotypeScore=9.0844;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.447;QD=21.18;ReadPosRankSum=-1.592;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2702,283,0 chrIV 1506542 . G A 4527.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4527,504,0 chrIV 1506798 . G A 4261.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.08;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4261,468,0 chrIV 1507052 . T A 4928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=206;Dels=0.00;FS=2.578;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-0.156;QD=23.92;ReadPosRankSum=2.907;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:3,203:206:99:4928,543,0 chrIV 1507078 . A G 4411.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.41;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4411,504,0 chrIV 1507082 . C G 4327.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.60;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4327,489,0 chrIV 1507442 . C T 5209.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=6.6930;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.36;SB=-3.042e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5209,573,0 chrIV 1507452 . T C 4452.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=4.4416;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=15.84;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:4452,527,0 chrIV 1508436 . C T 4822.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.12;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4822,534,0 chrIV 1508997 . C A 3724.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5240;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.13;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3724,417,0 chrIV 1509719 . C T 2621 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2654,306,0 chrIV 1510203 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.8712;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.19;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3826,429,0 chrIV 1510355 . G A 4748.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.27;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,200:204:99:4748,534,0 chrIV 1510411 . A G 4526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=205;Dels=0.00;FS=8.655;HaplotypeScore=16.8958;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.707;QD=22.08;ReadPosRankSum=2.414;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4526,513,0 chrIV 1510510 . C A 4202.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4202,450,0 chrIV 1510581 . G A 4215.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.4115;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.95;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4215,465,0 chrIV 1510608 . T C 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=179;Dels=0.00;FS=4.053;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=0.623;QD=21.13;ReadPosRankSum=1.713;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3783,429,0 chrIV 1511013 . C T 4369.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.4542;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.76;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4369,483,0 chrIV 1511041 . C T 4437.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.6923;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.75;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,200:204:99:4437,501,0 chrIV 1511078 . C T 5594.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.70;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:0,232:236:99:5594,618,0 chrIV 1511255 . T C 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=199;Dels=0.00;FS=12.450;HaplotypeScore=13.3405;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.200;QD=19.81;ReadPosRankSum=2.944;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:3,193:199:99:3942,462,0 chrIV 1511740 . G T 3848.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.4866;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.83;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3848,429,0 chrIV 1512102 . G A 2921 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2954,324,0 chrIV 1512253 . A T 2388 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2421,270,0 chrIV 1512312 . G A 3332.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3332,381,0 chrIV 1512839 . C T 4346.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.20;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4346,486,0 chrIV 1513172 . C T 4124.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=15.0559;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.66;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4124,444,0 chrIV 1513482 . T C 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=172;Dels=0.00;FS=10.232;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.424;QD=21.24;ReadPosRankSum=2.335;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3653,411,0 chrIV 1513578 . A T 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.570;QD=22.82;ReadPosRankSum=1.709;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3400,384,0 chrIV 1513649 . T C 2108 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.34;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2141,240,0 chrIV 1513661 . T C 2177 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.97;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2210,249,0 chrIV 1514258 . T C 2903 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.7176;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.41;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2936,330,0 chrIV 1514440 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.38;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3032,327,0 chrIV 1514500 . A G 2701 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.32;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2734,309,0 chrIV 1514528 . T C 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.272;QD=21.22;ReadPosRankSum=1.703;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2622,300,0 chrIV 1514569 . A T 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=3.820;HaplotypeScore=6.7273;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.601;QD=22.76;ReadPosRankSum=1.709;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3345,378,0 chrIV 1514618 . T G 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8649;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-1.569;QD=20.61;ReadPosRankSum=1.712;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3503,396,0 chrIV 1514724 . G A 3155 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.54;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3188,354,0 chrIV 1514773 . A C 2968 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.51;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3001,345,0 chrIV 1514837 . A G 2809 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.28;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2842,327,0 chrIV 1514926 . G A 2663 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.57;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2696,291,0 chrIV 1515052 . T C 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.349;DP=115;Dels=0.00;FS=2.417;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=1.163;QD=18.46;ReadPosRankSum=3.257;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:4,110:115:99:2156,246,0 chrIV 1515183 . T C 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=0.545;QD=22.49;ReadPosRankSum=1.694;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4094,477,0 chrIV 1515245 . A G 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.136;QD=20.78;ReadPosRankSum=1.669;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3470,387,0 chrIV 1515254 . T C 3189 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=19.21;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3222,366,0 chrIV 1515303 . A T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.52;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3603,393,0 chrIV 1515357 . T C 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.608;DP=189;Dels=0.00;FS=20.729;HaplotypeScore=10.4849;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.858;QD=21.35;ReadPosRankSum=3.774;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:5,184:189:99:4036,465,0 chrIV 1515498 . G C 3326.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.10;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3326,372,0 chrIV 1515549 . C T 2627 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.65;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2660,303,0 chrIV 1515636 . A T 3733.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.4608;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=21.83;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3733,414,0 chrIV 1515724 . A G 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.372;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=1.261;QD=21.44;ReadPosRankSum=1.704;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2735,312,0 chrIV 1515863 . T C 3091 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.60;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3124,360,0 chrIV 1515901 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=22.01;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3247,345,0 chrIV 1515907 . A G 3039 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.10;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3072,354,0 chrIV 1515965 . G T 3153 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.66;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3186,351,0 chrIV 1516046 . G A 4866.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.8509;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.97;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4866,534,0 chrIV 1516137 . G A 3842.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.87;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3842,435,0 chrIV 1516258 . T C 4555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=200;Dels=0.00;FS=3.850;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.722;QD=22.78;ReadPosRankSum=1.680;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4555,531,0 chrIV 1516312 . G A 3686.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.34;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3686,408,0 chrIV 1516433 . G A 4426.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=23.17;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4426,486,0 chrIV 1516634 . C A 3114 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=158.3454;MLEAC=2;MLEAF=1.00;MQ=36.20;MQ0=0;QD=16.05;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3147,342,0 chrIV 1516642 . A T 91.26 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=164.3508;MLEAC=2;MLEAF=1.00;MQ=33.46;MQ0=0;QD=0.49;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:15:124,15,0 chrIV 1516658 . T C 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.753;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.9783;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;MQRankSum=-1.468;QD=13.00;ReadPosRankSum=1.657;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:2425,279,0 chrIV 1516666 . G A 2667 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=38.10;MQ0=0;QD=13.61;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:2700,297,0 chrIV 1516853 . T G 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=147;Dels=0.00;FS=5.456;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;MQRankSum=-0.962;QD=21.82;ReadPosRankSum=1.684;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,143:147:99:3240,366,0 chrIV 1516976 . G C 2875 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.78;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2908,327,0 chrIV 1517095 . C G 1957 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.49;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,83:87:99:1990,228,0 chrIV 1517124 . A G 2539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=110;Dels=0.00;FS=6.355;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.064;QD=23.08;ReadPosRankSum=1.636;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2572,294,0 chrIV 1517212 . G A 1874 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1907,216,0 chrIV 1517286 . A T 2465 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.01;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2498,273,0 chrIV 1517334 . A G 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.577;QD=20.82;ReadPosRankSum=1.708;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2969,339,0 chrIV 1517349 . G A 3105 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.18;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3138,345,0 chrIV 1517383 . G A 2404 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.27;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2437,264,0 chrIV 1517502 . T A 2025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.695;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=1.516;QD=20.88;ReadPosRankSum=1.696;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2058,222,0 chrIV 1517600 . C T 1157 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=17.01;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1190,132,0 chrIV 1517601 . A G 1126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.219;DP=68;Dels=0.00;FS=5.398;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=0.717;QD=16.56;ReadPosRankSum=3.297;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:4,64:68:99:1159,132,0 chrIV 1517708 . A C 1239 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=18.77;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1272,144,0 chrIV 1517745 . C T 1579 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.93;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1612,180,0 chrIV 1517827 . G C 2006 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.60;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2039,234,0 chrIV 1517966 . A G 2158 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.48;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2191,252,0 chrIV 1518071 . C T 3735.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.3336;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.34;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3735,414,0 chrIV 1518269 . A G 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.610;QD=20.67;ReadPosRankSum=1.708;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2968,336,0 chrIV 1518332 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=20.80;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3785,429,0 chrIV 1518334 . C A 3866.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=21.13;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3866,426,0 chrIV 1518353 . C T 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=0.565;QD=19.12;ReadPosRankSum=0.157;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3576,381,0 chrIV 1518365 . G A 3764.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=18.91;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3764,408,0 chrIV 1518421 . C G 3802.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.23;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3802,438,0 chrIV 1518694 . C T 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.489;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.172;QD=21.89;ReadPosRankSum=-1.256;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2923,297,0 chrIV 1518758 . T C 2399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.843;QD=21.23;ReadPosRankSum=1.701;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2432,273,0 chrIV 1518800 . C T 2818 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.09;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2851,327,0 chrIV 1518943 . T C 1999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=125;Dels=0.01;FS=2.587;HaplotypeScore=100.0663;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=0.653;QD=15.99;ReadPosRankSum=1.721;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:3,118:124:99:2032,228,0 chrIV 1519089 . T C 3720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=157;Dels=0.00;FS=3.326;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.143;QD=23.69;ReadPosRankSum=1.710;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3720,423,0 chrIV 1519267 . T C 3720.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9311;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.54;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3720,420,0 chrIV 1519483 . C T 2018 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.2319;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=18.02;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2051,222,0 chrIV 1519512 . T C 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.454;QD=20.59;ReadPosRankSum=1.701;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2360,264,0 chrIV 1519618 . G A 3441.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.76;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3441,393,0 chrIV 1519797 . T C 3676.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.6414;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.88;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3676,414,0 chrIV 1519817 . C T 3723.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.34;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3723,420,0 chrIV 1520098 . G C 4100.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.7961;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.43;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4100,468,0 chrIV 1520281 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.8262;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.44;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3972,429,0 chrIV 1520393 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=22.80;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2952,321,0 chrIV 1520482 . G A 1756 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1789,192,0 chrIV 1523071 . A G 254 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=24.89;MQ0=0;QD=10.58;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:36:287,36,0 chrIV 1523087 . A G 305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.807;DP=26;Dels=0.00;FS=10.193;HaplotypeScore=13.3143;MLEAC=2;MLEAF=1.00;MQ=25.23;MQ0=0;MQRankSum=2.736;QD=11.73;ReadPosRankSum=-0.604;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:4,22:26:42:338,42,0 chrIV 1523114 . C T 347 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.06;MQ0=0;QD=15.09;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,21:23:45:380,45,0 chrIV 1523158 . A G 42.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.266;DP=17;Dels=0.00;FS=8.820;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=25.15;MQ0=0;MQRankSum=2.266;QD=2.53;ReadPosRankSum=0.053;SB=-4.347e+01 GT:AD:DP:GQ:PL 1/1:5,12:17:9:75,9,0 chrIV 1523425 . G T 637.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.530;DP=322;Dels=0.00;FS=10.718;HaplotypeScore=5.4841;MLEAC=1;MLEAF=0.500;MQ=11.41;MQ0=95;MQRankSum=-1.223;QD=1.98;ReadPosRankSum=8.144;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,233:322:99:667,0,207 chrIV 1523440 . T C 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.651;DP=521;Dels=0.00;FS=111.378;HaplotypeScore=31.6042;MLEAC=1;MLEAF=0.500;MQ=9.78;MQ0=170;MQRankSum=-3.492;QD=0.10;ReadPosRankSum=-6.227;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:310,211:521:84:84,0,579 chrIV 1523586 . T A 1119 filter AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=12.80;MQ0=93;QD=3.69;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,303:303:99:1152,129,0 chrIV 1523612 . A G 62.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.349;DP=319;Dels=0.00;FS=1.565;HaplotypeScore=14.6042;MLEAC=1;MLEAF=0.500;MQ=12.51;MQ0=92;MQRankSum=0.430;QD=0.19;ReadPosRankSum=-2.696;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:260,59:319:92:92,0,708 chrIV 1523616 . A G 944 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.328;DP=307;Dels=0.00;FS=117.101;HaplotypeScore=24.7024;MLEAC=2;MLEAF=1.00;MQ=12.65;MQ0=80;MQRankSum=-0.179;QD=3.07;ReadPosRankSum=3.452;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:29,277:307:69:977,69,0 chrIV 1523636 . G A 905 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=285;Dels=0.00;FS=46.989;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=13.28;MQ0=74;MQRankSum=-1.311;QD=3.18;ReadPosRankSum=1.600;SB=-1.901e+01 GT:AD:DP:GQ:PL 1/1:25,259:285:47:938,47,0 chrIV 1523658 . G T 189.01 filter AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=10.03;MQ0=55;QD=0.98;SB=-8.396e+01 GT:AD:DP:GQ:PL 1/1:0,179:192:27:222,27,0 chrIV 1523687 . T A 232.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.370;DP=120;Dels=0.05;FS=1.049;HaplotypeScore=49.0206;MLEAC=1;MLEAF=0.500;MQ=15.37;MQ0=43;MQRankSum=0.761;QD=1.93;ReadPosRankSum=2.332;SB=-1.310e+02 GT:AD:DP:GQ:PL 0/1:40,74:114:83:262,0,83 chrIV 1523715 . A T 230.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;DP=159;Dels=0.00;FS=11.082;HaplotypeScore=11.2395;MLEAC=1;MLEAF=0.500;MQ=17.36;MQ0=54;MQRankSum=-3.446;QD=1.45;ReadPosRankSum=4.671;SB=-1.500e+02 GT:AD:DP:GQ:PL 0/1:64,95:159:99:260,0,363 chrIV 1523820 . T C 311.02 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.926;DP=77;Dels=0.00;FS=89.865;HaplotypeScore=3.7298;MLEAC=2;MLEAF=1.00;MQ=15.36;MQ0=9;MQRankSum=-0.626;QD=4.04;ReadPosRankSum=-1.655;SB=-3.383e-02 GT:AD:DP:GQ:PL 1/1:16,61:77:25:344,25,0 chrIV 1523822 . G C 314.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.036;DP=75;Dels=0.00;FS=56.627;HaplotypeScore=5.6372;MLEAC=2;MLEAF=1.00;MQ=15.47;MQ0=8;MQRankSum=-0.561;QD=4.19;ReadPosRankSum=-2.899;SB=-1.402e+01 GT:AD:DP:GQ:PL 1/1:9,66:75:27:347,27,0 chrIV 1523823 . T C 314.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.758;DP=70;Dels=0.00;FS=86.398;HaplotypeScore=5.6372;MLEAC=2;MLEAF=1.00;MQ=15.50;MQ0=8;MQRankSum=-0.645;QD=4.49;ReadPosRankSum=-3.813;SB=-2.375e-02 GT:AD:DP:GQ:PL 1/1:15,54:70:27:347,27,0 chrIV 1523829 . A G 118.46 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.829;DP=37;Dels=0.00;FS=61.933;HaplotypeScore=6.5936;MLEAC=1;MLEAF=0.500;MQ=15.79;MQ0=8;MQRankSum=0.127;QD=3.20;ReadPosRankSum=-3.950;SB=-4.469e+00 GT:AD:DP:GQ:PL 0/1:15,22:37:1:147,0,1 chrIV 1523832 . C A 23.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;DP=18;Dels=0.00;FS=17.482;HaplotypeScore=9.6272;MLEAC=1;MLEAF=0.500;MQ=14.47;MQ0=8;MQRankSum=0.322;QD=1.28;ReadPosRankSum=-1.920;SB=-2.127e+00 GT:AD:DP:GQ:PL 0/1:9,3:18:14:53,0,14 chrIV 1523861 . T G 21.36 LowQual;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.9841;MLEAC=1;MLEAF=0.500;MQ=17.06;MQ0=4;QD=1.12;SB=18.17 GT:AD:DP:GQ:PL 1/1:0,18:19:6:52,6,0 chrIV 1523870 . A G 14.21 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=3.9673;MLEAC=1;MLEAF=0.500;MQ=16.84;MQ0=4;MQRankSum=0.054;QD=0.71;ReadPosRankSum=-1.030;SB=-4.079e-02 GT:AD:DP:GQ:PL 0/1:10,10:20:18:44,0,18 chrIV 1523876 . A C 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.827;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=7.7781;MLEAC=1;MLEAF=0.500;MQ=17.01;MQ0=4;MQRankSum=2.079;QD=0.47;ReadPosRankSum=-1.449;SB=-6.588e-03 GT:AD:DP:GQ:PL 0/1:22,2:24:41:41,0,45 chrIV 1523881 . A C 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=10.5631;MLEAC=1;MLEAF=0.500;MQ=16.39;MQ0=4;MQRankSum=2.128;QD=0.42;ReadPosRankSum=-0.273;SB=-6.628e-03 GT:AD:DP:GQ:PL 0/1:25,2:27:41:41,0,43 chrIV 1523885 . G A 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.882;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=12.6225;MLEAC=1;MLEAF=0.500;MQ=16.77;MQ0=4;MQRankSum=2.467;QD=0.49;ReadPosRankSum=-0.627;SB=-6.692e-03 GT:AD:DP:GQ:PL 0/1:26,3:29:41:44,0,41 chrIV 1523889 . C T 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.256;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=14.1999;MLEAC=1;MLEAF=0.500;MQ=16.67;MQ0=5;MQRankSum=2.471;QD=0.39;ReadPosRankSum=0.036;SB=-6.863e-03 GT:AD:DP:GQ:PL 0/1:30,4:34:38:43,0,38 chrIV 1523892 . A G 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=11.1153;MLEAC=1;MLEAF=0.500;MQ=16.85;MQ0=5;MQRankSum=2.143;QD=0.32;ReadPosRankSum=0.760;SB=-6.628e-03 GT:AD:DP:GQ:PL 0/1:32,3:35:41:41,0,43 chrIV 1523895 . A G 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=11.2410;MLEAC=1;MLEAF=0.500;MQ=16.69;MQ0=5;MQRankSum=2.238;QD=0.31;ReadPosRankSum=0.902;SB=-6.656e-03 GT:AD:DP:GQ:PL 0/1:33,3:37:41:41,0,42 chrIV 1523906 . C T 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=7.4408;MLEAC=1;MLEAF=0.500;MQ=17.30;MQ0=8;MQRankSum=2.327;QD=0.28;ReadPosRankSum=1.487;SB=-6.736e-03 GT:AD:DP:GQ:PL 0/1:37,3:40:40:41,0,40 chrIV 1523913 . T C 76.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.741;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=16.9796;MLEAC=1;MLEAF=0.500;MQ=17.53;MQ0=7;MQRankSum=-1.068;QD=1.62;ReadPosRankSum=-0.142;SB=-7.889e-03 GT:AD:DP:GQ:PL 0/1:8,39:47:32:106,0,32 chrIV 1523927 . T A 121.39 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=75.8569;MLEAC=1;MLEAF=0.500;MQ=17.15;MQ0=7;MQRankSum=-0.101;QD=1.66;ReadPosRankSum=-0.194;SB=19.61 GT:AD:DP:GQ:PL 0/1:23,47:73:3:150,0,3 chrIV 1523932 . C T 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.044;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=28.5235;MLEAC=1;MLEAF=0.500;MQ=17.20;MQ0=7;MQRankSum=1.312;QD=0.27;ReadPosRankSum=2.294;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,26:82:52:52,0,164 chrIV 1523934 . G C 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.096;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=28.5235;MLEAC=1;MLEAF=0.500;MQ=17.18;MQ0=7;MQRankSum=0.865;QD=0.20;ReadPosRankSum=2.167;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,26:84:47:47,0,159 chrIV 1523942 . T G 55.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.420;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=59.2926;MLEAC=1;MLEAF=0.500;MQ=17.84;MQ0=7;MQRankSum=0.219;QD=0.60;ReadPosRankSum=-5.432;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,14:92:85:85,0,154 chrIV 1524000 . A T 72.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.078;DP=111;Dels=0.00;FS=3.171;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=16.77;MQ0=1;MQRankSum=-0.975;QD=0.65;ReadPosRankSum=0.299;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,57:111:99:102,0,130 chrIV 1524001 . G A 100.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DP=107;Dels=0.00;FS=3.304;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=17.01;MQ0=0;MQRankSum=0.859;QD=0.93;ReadPosRankSum=0.340;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:57,50:107:99:130,0,103 chrIV 1524003 . C T 279 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=16.3140;MLEAC=2;MLEAF=1.00;MQ=16.90;MQ0=0;QD=2.74;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,102:102:39:312,39,0 chrIV 1524013 . G A 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.579;DP=89;Dels=0.00;FS=2.436;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.40;MQ0=0;MQRankSum=1.345;QD=0.40;ReadPosRankSum=1.521;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,24:89:66:66,0,108 chrIV 1524025 . T C 160.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=66;Dels=0.00;FS=9.744;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.64;MQ0=0;MQRankSum=-1.155;QD=2.42;ReadPosRankSum=1.680;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:24:193,24,0 chrIV 1524040 . C T 103.13 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.52;MQ0=0;QD=2.24;SB=-1.081e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:18:136,18,0 chrIV 1524043 . A G 124.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=17.63;MQ0=0;MQRankSum=-1.537;QD=2.82;ReadPosRankSum=2.840;SB=-1.081e+02 GT:AD:DP:GQ:PL 1/1:3,41:44:21:157,21,0 chrIV 1524052 . T A 47.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.306;DP=29;Dels=0.00;FS=21.312;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.54;MQ0=0;MQRankSum=2.139;QD=1.64;ReadPosRankSum=3.417;SB=-1.943e+01 GT:AD:DP:GQ:PL 0/1:11,18:29:7:77,0,7 chrIV 1524054 . G A 59.51 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.89;MQ0=0;QD=2.48;SB=-2.252e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:12:92,12,0 chrIV 1524059 . T C 36.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.06;MQ0=0;MQRankSum=-0.578;QD=1.76;ReadPosRankSum=1.569;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:1,20:21:9:69,9,0 chrIV 1524076 . C G 88.26 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.40;MQ0=0;QD=5.52;SB=-2.723e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:15:121,15,0 chrIV 1524087 . A T 87.26 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=0;QD=4.85;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:15:120,15,0 chrIV 1524088 . G T 87.26 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=0;QD=4.85;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:15:120,15,0 chrIV 1524093 . A C 87.26 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=4.36;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:15:120,15,0 chrIV 1524097 . T G 85.26 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=4.26;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:15:118,15,0 chrIV 1524101 . G T 86.26 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=15.7720;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=4.31;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:15:119,15,0 chrIV 1524134 . G A 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.07;MQ0=0;QD=1.25;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,15:15:6:50,6,0 chrIV 1524135 . C T 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.07;MQ0=0;QD=1.25;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,15:15:6:50,6,0 chrIV 1524140 . G A 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.69;MQ0=0;QD=1.18;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,16:16:6:50,6,0 chrIV 1524207 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;MQRankSum=-0.736;QD=2.01;ReadPosRankSum=0.736;SB=-4.780e+01 GT:AD:DP:GQ:PL 1/1:1,5:6:6:43,6,0 chrIV 1524208 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=1.51;SB=-4.680e+01 GT:AD:DP:GQ:PL 1/1:0,6:8:6:43,6,0 chrIV 1524216 . A T 420 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=8.5466;MLEAC=2;MLEAF=1.00;MQ=27.10;MQ0=0;QD=13.55;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:54:453,54,0 chrIV 1524260 . A C 2141.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;DP=216;Dels=0.00;FS=22.391;HaplotypeScore=93.8426;MLEAC=1;MLEAF=0.500;MQ=30.64;MQ0=0;MQRankSum=0.057;QD=9.91;ReadPosRankSum=8.402;SB=-3.260e+02 GT:AD:DP:GQ:PL 0/1:82,121:216:99:2171,0,462 chrIV 1524292 . C A 2546.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.975;DP=418;Dels=0.00;FS=96.795;HaplotypeScore=2.5640;MLEAC=1;MLEAF=0.500;MQ=29.95;MQ0=8;MQRankSum=0.185;QD=6.09;ReadPosRankSum=0.162;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,271:418:99:2576,0,2608 chrIV 1524299 . C A,T 6235.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=449;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1,1;MLEAF=0.500,0.500;MQ=29.55;MQ0=8;QD=13.89;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/2:0,145,304:449:99:6235,3128,2714,3107,0,2696 chrIV 1524313 . C T 1974.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.096;DP=469;Dels=0.00;FS=62.089;HaplotypeScore=257.5141;MLEAC=1;MLEAF=0.500;MQ=28.91;MQ0=8;MQRankSum=-2.771;QD=4.21;ReadPosRankSum=-1.815;SB=-3.640e+02 GT:AD:DP:GQ:PL 0/1:290,179:469:99:2004,0,2907 chrIV 1524315 . G C 2871.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.866;DP=467;Dels=0.00;FS=61.108;HaplotypeScore=278.9128;MLEAC=1;MLEAF=0.500;MQ=28.97;MQ0=8;MQRankSum=3.296;QD=6.15;ReadPosRankSum=2.406;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:180,286:467:99:2901,0,1841 chrIV 1524334 . A T 483.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.622;DP=449;Dels=0.00;FS=131.313;HaplotypeScore=101.3598;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=8;MQRankSum=-2.859;QD=1.08;ReadPosRankSum=-1.182;SB=1.18 GT:AD:DP:GQ:PL 0/1:391,58:449:99:513,0,3760 chrIV 1524343 . A G 295.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.840;DP=420;Dels=0.00;FS=123.099;HaplotypeScore=5.2341;MLEAC=1;MLEAF=0.500;MQ=29.03;MQ0=8;MQRankSum=-2.189;QD=0.70;ReadPosRankSum=-3.093;SB=0.163 GT:AD:DP:GQ:PL 0/1:371,49:420:99:325,0,3467 chrIV 1524372 . C G 887 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.74;MQ0=0;QD=4.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:920,111,0 chrIV 1524377 . T C 299.10 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=18.388;HaplotypeScore=3.9659;MLEAC=2;MLEAF=1.00;MQ=21.86;MQ0=0;MQRankSum=-0.728;QD=4.33;ReadPosRankSum=1.682;SB=-1.145e-01 GT:AD:DP:GQ:PL 1/1:1,68:69:19:332,19,0 chrIV 1524381 . A T 281.34 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;DP=70;Dels=0.00;FS=33.829;HaplotypeScore=9.9220;MLEAC=1;MLEAF=0.500;MQ=21.98;MQ0=0;MQRankSum=-1.392;QD=4.02;ReadPosRankSum=2.380;SB=-3.348e+00 GT:AD:DP:GQ:PL 0/1:2,68:70:8:311,0,8 chrIV 1524385 . T G 263.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;DP=74;Dels=0.00;FS=82.678;HaplotypeScore=21.7216;MLEAC=1;MLEAF=0.500;MQ=22.08;MQ0=0;MQRankSum=-0.861;QD=3.55;ReadPosRankSum=4.030;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:6,68:74:56:293,0,56 chrIV 1524386 . G A 209.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.930;DP=74;Dels=0.00;FS=21.391;HaplotypeScore=21.7216;MLEAC=1;MLEAF=0.500;MQ=22.08;MQ0=0;MQRankSum=0.081;QD=2.82;ReadPosRankSum=1.437;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,40:74:99:239,0,118 chrIV 1524388 . G A 292.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;DP=75;Dels=0.00;FS=92.977;HaplotypeScore=22.7202;MLEAC=1;MLEAF=0.500;MQ=22.19;MQ0=0;MQRankSum=-1.849;QD=3.89;ReadPosRankSum=4.143;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:7,68:75:77:322,0,77 chrIV 1524390 . T A 288.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;DP=77;Dels=0.00;FS=112.077;HaplotypeScore=32.5996;MLEAC=1;MLEAF=0.500;MQ=22.39;MQ0=0;MQRankSum=-2.148;QD=3.74;ReadPosRankSum=4.289;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:9,68:77:99:318,0,130 chrIV 1524400 . G A 156.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;DP=75;Dels=0.00;FS=123.031;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.54;MQ0=0;MQRankSum=3.187;QD=2.08;ReadPosRankSum=2.146;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:63,12:75:99:186,0,210 chrIV 1524416 . G A 673 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.77;MQ0=0;QD=15.65;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:81:706,81,0 chrIV 1524418 . C A 683 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.77;MQ0=0;QD=15.88;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:81:716,81,0 chrIV 1524432 . A C 1209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.879;DP=75;Dels=0.00;FS=38.295;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=26.75;MQ0=0;MQRankSum=2.149;QD=16.12;ReadPosRankSum=-0.095;SB=-1.701e+01 GT:AD:DP:GQ:PL 1/1:3,72:75:99:1242,144,0 chrIV 1524445 . T C 1230 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.596;DP=105;Dels=0.00;FS=62.366;HaplotypeScore=20.9823;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=0;MQRankSum=2.821;QD=11.71;ReadPosRankSum=1.016;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:5,100:105:99:1263,153,0 chrIV 1524446 . G C 66.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;DP=105;Dels=0.00;FS=1.696;HaplotypeScore=19.0355;MLEAC=1;MLEAF=0.500;MQ=26.68;MQ0=0;MQRankSum=1.455;QD=0.63;ReadPosRankSum=-4.036;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:78,27:105:96:96,0,865 chrIV 1524447 . A T 827.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.621;DP=105;Dels=0.00;FS=20.241;HaplotypeScore=19.0355;MLEAC=1;MLEAF=0.500;MQ=26.68;MQ0=0;MQRankSum=0.707;QD=7.88;ReadPosRankSum=4.250;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:32,73:105:92:857,0,92 chrIV 1524448 . A G 1147 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=19.0355;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=0;QD=10.92;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1180,147,0 chrIV 1524458 . G A 2305 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.392;DP=191;Dels=0.00;FS=79.276;HaplotypeScore=17.0594;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=0;MQRankSum=4.141;QD=12.07;ReadPosRankSum=3.180;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:7,184:191:99:2338,270,0 chrIV 1524465 . A T 1181.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;DP=254;Dels=0.00;FS=4.881;HaplotypeScore=17.9752;MLEAC=1;MLEAF=0.500;MQ=27.52;MQ0=1;MQRankSum=1.634;QD=4.65;ReadPosRankSum=6.772;SB=-3.140e+02 GT:AD:DP:GQ:PL 0/1:138,116:254:99:1211,0,1240 chrIV 1524468 . T A 1352.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655;DP=276;Dels=0.00;FS=54.838;HaplotypeScore=40.5058;MLEAC=1;MLEAF=0.500;MQ=27.91;MQ0=1;MQRankSum=1.385;QD=4.90;ReadPosRankSum=-3.957;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:137,139:276:99:1382,0,1257 chrIV 1524470 . A G 1072.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-11.152;DP=296;Dels=0.00;FS=5.570;HaplotypeScore=36.6372;MLEAC=1;MLEAF=0.500;MQ=28.91;MQ0=1;MQRankSum=0.381;QD=3.62;ReadPosRankSum=5.914;SB=-3.420e+02 GT:AD:DP:GQ:PL 0/1:171,124:296:99:1102,0,1803 chrIV 1524477 . A G 4216.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.275;DP=334;Dels=0.00;FS=105.269;HaplotypeScore=50.4084;MLEAC=2;MLEAF=1.00;MQ=29.04;MQ0=2;MQRankSum=5.468;QD=12.62;ReadPosRankSum=0.818;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:17,316:334:99:4216,506,0 chrIV 1524492 . A G 414.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-12.883;DP=548;Dels=0.00;FS=1.019;HaplotypeScore=27.3591;MLEAC=1;MLEAF=0.500;MQ=28.29;MQ0=5;MQRankSum=1.240;QD=0.76;ReadPosRankSum=4.998;SB=-2.310e+02 GT:AD:DP:GQ:PL 0/1:424,123:548:99:444,0,5563 chrIV 1524506 . G T 9235.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=638;Dels=0.00;FS=0.000;HaplotypeScore=31.0486;MLEAC=2;MLEAF=1.00;MQ=27.45;MQ0=10;MQRankSum=-1.671;QD=14.47;ReadPosRankSum=1.456;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:1,637:638:99:9235,1084,0 chrIV 1524533 . A T 922.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.741;DP=599;Dels=0.00;FS=0.859;HaplotypeScore=297.9272;MLEAC=1;MLEAF=0.500;MQ=27.25;MQ0=10;MQRankSum=-4.383;QD=1.54;ReadPosRankSum=9.258;SB=-2.760e+02 GT:AD:DP:GQ:PL 0/1:472,126:599:99:952,0,5478 chrIV 1524542 . C T 8389.01 filter AC=2;AF=1.00;AN=2;DP=569;Dels=0.00;FS=0.000;HaplotypeScore=121.7431;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=10;QD=14.74;SB=-3.074e+03 GT:AD:DP:GQ:PL 1/1:0,568:569:99:8389,979,0 chrIV 1524548 . A G 1010.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.251;DP=547;Dels=0.00;FS=2.342;HaplotypeScore=26.7057;MLEAC=1;MLEAF=0.500;MQ=27.46;MQ0=10;MQRankSum=-4.924;QD=1.85;ReadPosRankSum=5.831;SB=-3.080e+02 GT:AD:DP:GQ:PL 0/1:417,130:547:99:1040,0,4951 chrIV 1524583 . A T 905.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;DP=258;Dels=0.00;FS=26.281;HaplotypeScore=50.6594;MLEAC=1;MLEAF=0.500;MQ=19.25;MQ0=5;MQRankSum=1.282;QD=3.51;ReadPosRankSum=-4.699;SB=-4.150e+02 GT:AD:DP:GQ:PL 0/1:145,113:258:99:935,0,392 chrIV 1524590 . C A 169.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.938;DP=168;Dels=0.00;FS=49.759;HaplotypeScore=10.0136;MLEAC=1;MLEAF=0.500;MQ=17.70;MQ0=4;MQRankSum=-3.911;QD=1.01;ReadPosRankSum=7.015;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:38,130:168:99:199,0,310 chrIV 1524591 . G A 229.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601;DP=163;Dels=0.00;FS=66.048;HaplotypeScore=8.4362;MLEAC=1;MLEAF=0.500;MQ=17.47;MQ0=3;MQRankSum=4.173;QD=1.40;ReadPosRankSum=-7.285;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:127,36:163:99:259,0,222 chrIV 1524595 . G A 341 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.941;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=13.3032;MLEAC=2;MLEAF=1.00;MQ=15.76;MQ0=0;MQRankSum=1.250;QD=2.82;ReadPosRankSum=0.905;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:2,119:121:51:374,51,0 chrIV 1524599 . T C 296 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.381;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5471;MLEAC=2;MLEAF=1.00;MQ=15.72;MQ0=0;MQRankSum=0.955;QD=2.77;ReadPosRankSum=1.967;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:2,105:107:45:329,45,0 chrIV 1524600 . A G 295 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.806;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5471;MLEAC=2;MLEAF=1.00;MQ=15.72;MQ0=0;MQRankSum=1.461;QD=2.76;ReadPosRankSum=2.128;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:2,105:107:45:328,45,0 chrIV 1524612 . T C 322 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.870;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.1764;MLEAC=2;MLEAF=1.00;MQ=16.66;MQ0=0;MQRankSum=0.623;QD=2.19;ReadPosRankSum=2.297;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:7,140:147:48:355,48,0 chrIV 1524614 . G C 326 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.1764;MLEAC=2;MLEAF=1.00;MQ=16.66;MQ0=0;QD=2.22;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,147:147:48:359,48,0 chrIV 1524615 . C A 324 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.1764;MLEAC=2;MLEAF=1.00;MQ=16.66;MQ0=0;QD=2.20;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,147:147:48:357,48,0 chrIV 1524624 . G A 350 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.227;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.8751;MLEAC=2;MLEAF=1.00;MQ=18.25;MQ0=0;MQRankSum=-0.635;QD=1.88;ReadPosRankSum=3.951;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:15,171:186:51:383,51,0 chrIV 1524649 . G A 167.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;DP=277;Dels=0.01;FS=0.000;HaplotypeScore=56.5668;MLEAC=1;MLEAF=0.500;MQ=19.93;MQ0=6;MQRankSum=2.536;QD=0.60;ReadPosRankSum=0.458;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:244,27:275:99:197,0,777 chrIV 1524653 . G A 840.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.225;DP=281;Dels=0.00;FS=55.923;HaplotypeScore=67.5687;MLEAC=1;MLEAF=0.500;MQ=20.02;MQ0=9;MQRankSum=-2.457;QD=2.99;ReadPosRankSum=0.703;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:45,235:281:99:870,0,265 chrIV 1524657 . G C 737.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.733;DP=288;Dels=0.00;FS=15.632;HaplotypeScore=74.4659;MLEAC=1;MLEAF=0.500;MQ=20.51;MQ0=12;MQRankSum=-1.073;QD=2.56;ReadPosRankSum=3.259;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,204:288:99:767,0,386 chrIV 1524658 . A G 698.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.008;DP=290;Dels=0.00;FS=69.175;HaplotypeScore=74.2881;MLEAC=1;MLEAF=0.500;MQ=20.52;MQ0=12;MQRankSum=-2.134;QD=2.41;ReadPosRankSum=5.153;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,204:290:99:728,0,535 chrIV 1524683 . G A 1643.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;DP=412;Dels=0.00;FS=4.170;HaplotypeScore=52.5010;MLEAC=1;MLEAF=0.500;MQ=21.55;MQ0=35;MQRankSum=-1.938;QD=3.99;ReadPosRankSum=-0.287;SB=-8.850e+02 GT:AD:DP:GQ:PL 0/1:162,248:412:99:1673,0,1469 chrIV 1524693 . T G 1063.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-12.044;DP=425;Dels=0.00;FS=26.762;HaplotypeScore=215.8406;MLEAC=1;MLEAF=0.500;MQ=21.58;MQ0=35;MQRankSum=0.469;QD=2.50;ReadPosRankSum=-0.392;SB=-5.490e+02 GT:AD:DP:GQ:PL 0/1:242,183:425:99:1093,0,2288 chrIV 1524696 . C T 2395.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.199;DP=418;Dels=0.00;FS=8.653;HaplotypeScore=174.9878;MLEAC=1;MLEAF=0.500;MQ=21.64;MQ0=35;MQRankSum=1.921;QD=5.73;ReadPosRankSum=-1.172;SB=-1.373e+03 GT:AD:DP:GQ:PL 0/1:127,291:418:99:2425,0,1000 chrIV 1524698 . G A 226.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.720;DP=426;Dels=0.00;FS=0.000;HaplotypeScore=205.7000;MLEAC=1;MLEAF=0.500;MQ=21.59;MQ0=37;MQRankSum=-0.511;QD=0.53;ReadPosRankSum=3.305;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:357,63:426:99:256,0,3249 chrIV 1524708 . C A 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.180;DP=418;Dels=0.00;FS=94.036;HaplotypeScore=127.6969;MLEAC=1;MLEAF=0.500;MQ=21.77;MQ0=42;MQRankSum=1.321;QD=0.06;ReadPosRankSum=-0.705;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:368,48:418:56:56,0,3489 chrIV 1524717 . A G 159.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.028;DP=402;Dels=0.00;FS=5.833;HaplotypeScore=176.8819;MLEAC=1;MLEAF=0.500;MQ=21.54;MQ0=45;MQRankSum=-1.637;QD=0.40;ReadPosRankSum=3.236;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:339,63:402:99:189,0,3440 chrIV 1524720 . T C 197.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.966;DP=403;Dels=0.00;FS=5.842;HaplotypeScore=159.2029;MLEAC=1;MLEAF=0.500;MQ=21.33;MQ0=46;MQRankSum=-1.618;QD=0.49;ReadPosRankSum=3.023;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/1:340,63:403:99:227,0,3501 chrIV 1524726 . G A 285.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;DP=395;Dels=0.00;FS=11.514;HaplotypeScore=105.8302;MLEAC=1;MLEAF=0.500;MQ=21.20;MQ0=48;MQRankSum=-1.583;QD=0.72;ReadPosRankSum=2.439;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:328,66:395:99:315,0,3255 chrIV 1524740 . C T 421.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.093;DP=374;Dels=0.00;FS=0.484;HaplotypeScore=148.2977;MLEAC=1;MLEAF=0.500;MQ=20.83;MQ0=46;MQRankSum=1.189;QD=1.13;ReadPosRankSum=3.442;SB=-2.540e+02 GT:AD:DP:GQ:PL 0/1:299,74:374:99:451,0,3072 chrIV 1524741 . G A 1247.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.612;DP=373;Dels=0.00;FS=3.063;HaplotypeScore=271.6500;MLEAC=1;MLEAF=0.500;MQ=20.69;MQ0=46;MQRankSum=0.035;QD=3.34;ReadPosRankSum=-2.955;SB=-8.400e+02 GT:AD:DP:GQ:PL 0/1:225,143:373:99:1277,0,2191 chrIV 1524751 . C T 481.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.580;DP=397;Dels=0.00;FS=0.000;HaplotypeScore=170.1910;MLEAC=1;MLEAF=0.500;MQ=20.80;MQ0=39;MQRankSum=3.744;QD=1.21;ReadPosRankSum=3.899;SB=-2.910e+02 GT:AD:DP:GQ:PL 0/1:262,79:397:99:511,0,3195 chrIV 1524754 . T C 2327.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.394;DP=379;Dels=0.00;FS=8.139;HaplotypeScore=217.9264;MLEAC=1;MLEAF=0.500;MQ=20.82;MQ0=39;MQRankSum=0.255;QD=6.14;ReadPosRankSum=-1.292;SB=-1.065e+03 GT:AD:DP:GQ:PL 0/1:180,195:379:99:2357,0,1498 chrIV 1524764 . G A 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.778;DP=336;Dels=0.00;FS=7.736;HaplotypeScore=115.4042;MLEAC=1;MLEAF=0.500;MQ=20.22;MQ0=36;MQRankSum=6.754;QD=0.15;ReadPosRankSum=1.639;SB=-2.050e+02 GT:AD:DP:GQ:PL 0/1:281,55:336:81:81,0,3439 chrIV 1524779 . T A 4202.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.722;DP=311;Dels=0.00;FS=43.098;HaplotypeScore=33.6198;MLEAC=2;MLEAF=1.00;MQ=19.65;MQ0=36;MQRankSum=0.930;QD=13.51;ReadPosRankSum=6.522;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:17,294:311:99:4202,546,0 chrIV 1524793 . G A 2917.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.604;DP=380;Dels=0.00;FS=88.509;HaplotypeScore=129.2506;MLEAC=1;MLEAF=0.500;MQ=18.10;MQ0=37;MQRankSum=-5.621;QD=7.68;ReadPosRankSum=0.108;SB=-1.577e+03 GT:AD:DP:GQ:PL 0/1:88,291:380:31:2947,0,31 chrIV 1524799 . G A 2714.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.493;DP=424;Dels=0.00;FS=125.198;HaplotypeScore=145.7097;MLEAC=1;MLEAF=0.500;MQ=17.77;MQ0=41;MQRankSum=-2.695;QD=6.40;ReadPosRankSum=4.737;SB=-1.395e+03 GT:AD:DP:GQ:PL 0/1:113,289:424:99:2744,0,273 chrIV 1524838 . G T 202.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=16.239;DP=908;Dels=0.00;FS=138.859;HaplotypeScore=144.0466;MLEAC=1;MLEAF=0.500;MQ=21.00;MQ0=68;MQRankSum=-3.917;QD=0.22;ReadPosRankSum=5.700;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:721,180:908:99:232,0,7186 chrIV 1524852 . G A 7121.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.008;DP=900;Dels=0.00;FS=143.869;HaplotypeScore=110.7269;MLEAC=1;MLEAF=0.500;MQ=20.70;MQ0=80;MQRankSum=3.331;QD=7.91;ReadPosRankSum=-2.583;SB=-3.219e+03 GT:AD:DP:GQ:PL 0/1:249,645:900:99:7121,0,1081 chrIV 1524880 . G T 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.942;DP=845;Dels=0.00;FS=159.956;HaplotypeScore=22.4064;MLEAC=1;MLEAF=0.500;MQ=21.13;MQ0=80;MQRankSum=-4.756;QD=0.01;ReadPosRankSum=-8.765;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:721,116:845:42:42,0,7703 chrIV 1524886 . T C 7850.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.427;DP=808;Dels=0.00;FS=166.099;HaplotypeScore=5.6707;MLEAC=1;MLEAF=0.500;MQ=21.53;MQ0=79;MQRankSum=4.627;QD=9.72;ReadPosRankSum=10.745;SB=-3.562e+03 GT:AD:DP:GQ:PL 0/1:119,686:808:91:7850,0,91 chrIV 1524901 . G A 80.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.227;DP=710;Dels=0.00;FS=0.391;HaplotypeScore=216.0207;MLEAC=1;MLEAF=0.500;MQ=22.91;MQ0=64;MQRankSum=-1.940;QD=0.11;ReadPosRankSum=4.480;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:587,117:710:99:110,0,7510 chrIV 1524949 . G A 1325.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.701;DP=308;Dels=0.00;FS=7.538;HaplotypeScore=308.6321;MLEAC=1;MLEAF=0.500;MQ=24.17;MQ0=15;MQRankSum=-1.958;QD=4.30;ReadPosRankSum=3.784;SB=-1.960e+02 GT:AD:DP:GQ:PL 0/1:200,108:308:99:1355,0,1600 chrIV 1524995 . T G 649.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.115;DP=446;Dels=0.00;FS=253.932;HaplotypeScore=383.8183;MLEAC=1;MLEAF=0.500;MQ=22.89;MQ0=6;MQRankSum=-5.718;QD=1.46;ReadPosRankSum=-4.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:300,146:446:99:679,0,3536 chrIV 1524997 . C G 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.874;DP=458;Dels=0.00;FS=157.354;HaplotypeScore=434.6466;MLEAC=1;MLEAF=0.500;MQ=22.62;MQ0=6;MQRankSum=-4.070;QD=0.07;ReadPosRankSum=-5.508;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:383,75:458:60:60,0,3855 chrIV 1524998 . G T 1558.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.813;DP=467;Dels=0.00;FS=67.804;HaplotypeScore=440.1980;MLEAC=1;MLEAF=0.500;MQ=22.57;MQ0=6;MQRankSum=7.059;QD=3.34;ReadPosRankSum=9.855;SB=-4.270e+02 GT:AD:DP:GQ:PL 0/1:363,104:467:99:1588,0,2421 chrIV 1525003 . G C,T 4855.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=486;Dels=0.00;FS=0.000;HaplotypeScore=621.8266;MLEAC=1,1;MLEAF=0.500,0.500;MQ=22.59;MQ0=7;QD=9.99;SB=-3.068e+03 GT:AD:DP:GQ:PL 1/2:0,392,91:486:99:4855,851,318,4004,0,3893 chrIV 1525023 . A G 143.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.372;DP=667;Dels=0.00;FS=242.428;HaplotypeScore=296.5469;MLEAC=1;MLEAF=0.500;MQ=22.12;MQ0=28;MQRankSum=3.008;QD=0.21;ReadPosRankSum=3.387;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:514,109:667:99:173,0,4929 chrIV 1525052 . A G 79.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.401;DP=581;Dels=0.04;FS=12.149;HaplotypeScore=175.1135;MLEAC=1;MLEAF=0.500;MQ=20.54;MQ0=37;MQRankSum=1.002;QD=0.14;ReadPosRankSum=-1.435;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:509,50:559:99:109,0,3503 chrIV 1525053 . G A 2495.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.493;DP=571;Dels=0.04;FS=103.407;HaplotypeScore=181.0850;MLEAC=1;MLEAF=0.500;MQ=20.56;MQ0=37;MQRankSum=5.809;QD=4.37;ReadPosRankSum=3.396;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:225,324:549:99:2525,0,1134 chrIV 1525061 . G C 2192.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.687;DP=546;Dels=0.00;FS=171.853;HaplotypeScore=144.6478;MLEAC=1;MLEAF=0.500;MQ=20.54;MQ0=37;MQRankSum=7.806;QD=4.01;ReadPosRankSum=5.644;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:230,316:546:99:2222,0,823 chrIV 1525062 . A G 4073.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.956;DP=543;Dels=0.00;FS=2.115;HaplotypeScore=137.0291;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=37;MQRankSum=-0.357;QD=7.50;ReadPosRankSum=5.788;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:12,531:543:99:4073,485,0 chrIV 1525071 . G A 667.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.596;DP=516;Dels=0.00;FS=13.875;HaplotypeScore=137.4937;MLEAC=1;MLEAF=0.500;MQ=20.66;MQ0=37;MQRankSum=-5.959;QD=1.29;ReadPosRankSum=-5.950;SB=-1.010e+02 GT:AD:DP:GQ:PL 0/1:347,169:516:99:697,0,2425 chrIV 1525073 . G A 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.916;DP=520;Dels=0.00;FS=33.930;HaplotypeScore=121.0880;MLEAC=1;MLEAF=0.500;MQ=20.76;MQ0=37;MQRankSum=-4.407;QD=0.02;ReadPosRankSum=-2.856;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:436,83:520:40:40,0,3081 chrIV 1525094 . G A 1975.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.602;DP=403;Dels=0.00;FS=113.056;HaplotypeScore=7.6785;MLEAC=1;MLEAF=0.500;MQ=21.93;MQ0=34;MQRankSum=6.316;QD=4.90;ReadPosRankSum=0.145;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:167,236:403:99:2005,0,852 chrIV 1525098 . G A 2976 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.444;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=24.2109;MLEAC=2;MLEAF=1.00;MQ=22.11;MQ0=31;MQRankSum=-1.123;QD=8.53;ReadPosRankSum=-0.490;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:2,347:349:99:3009,293,0 chrIV 1525107 . T C 931.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.704;DP=247;Dels=0.04;FS=20.161;HaplotypeScore=99.9187;MLEAC=1;MLEAF=0.500;MQ=23.02;MQ0=21;MQRankSum=4.283;QD=3.77;ReadPosRankSum=-2.876;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,129:238:99:961,0,690 chrIV 1525125 . T C 2049 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=25.3438;MLEAC=2;MLEAF=1.00;MQ=24.47;MQ0=6;QD=11.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2082,240,0 chrIV 1525130 . T C 267.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=106.6380;MLEAC=1;MLEAF=0.500;MQ=25.80;MQ0=1;MQRankSum=1.443;QD=1.55;ReadPosRankSum=0.659;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,42:172:99:297,0,1255 chrIV 1525131 . G A 328.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.002;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=110.5957;MLEAC=1;MLEAF=0.500;MQ=25.97;MQ0=0;MQRankSum=0.691;QD=1.92;ReadPosRankSum=0.602;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:127,44:171:99:358,0,1155 chrIV 1525140 . T C 1587 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.682;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=207.9842;MLEAC=2;MLEAF=1.00;MQ=26.39;MQ0=0;MQRankSum=-2.161;QD=10.94;ReadPosRankSum=1.470;SB=3.00 GT:AD:DP:GQ:PL 1/1:25,110:145:99:1620,192,0 chrIV 1525147 . G T 935 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.277;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=146.0490;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=0;MQRankSum=-0.791;QD=7.25;ReadPosRankSum=-4.545;SB=3.00 GT:AD:DP:GQ:PL 1/1:57,71:129:82:968,82,0 chrIV 1525148 . A G 954 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-7.374;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=144.0663;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;MQRankSum=-1.602;QD=7.23;ReadPosRankSum=-6.453;SB=3.00 GT:AD:DP:GQ:PL 1/1:58,67:132:99:987,120,0 chrIV 1525177 . G A 2176.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.395;DP=240;Dels=0.00;FS=87.214;HaplotypeScore=155.0902;MLEAC=1;MLEAF=0.500;MQ=26.37;MQ0=2;MQRankSum=1.560;QD=9.07;ReadPosRankSum=-4.009;SB=-9.320e+02 GT:AD:DP:GQ:PL 0/1:111,126:240:99:2206,0,272 chrIV 1525216 . C G 3583.01 filter AC=2;AF=1.00;AN=2;DP=239;Dels=0.03;FS=0.000;HaplotypeScore=47.3373;MLEAC=2;MLEAF=1.00;MQ=24.39;MQ0=6;QD=14.99;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,213:232:99:3583,443,0 chrIV 1525263 . A G 639 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=95;Dels=0.00;FS=18.011;HaplotypeScore=52.6764;MLEAC=2;MLEAF=1.00;MQ=22.57;MQ0=2;MQRankSum=-0.502;QD=6.73;ReadPosRankSum=4.124;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:10,85:95:68:672,68,0 chrIV 1525267 . G A 71.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.027;DP=65;Dels=0.00;FS=13.744;HaplotypeScore=17.0904;MLEAC=1;MLEAF=0.500;MQ=21.70;MQ0=2;MQRankSum=-1.220;QD=1.09;ReadPosRankSum=-3.220;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,29:65:99:101,0,209 chrIV 1525269 . A G 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;DP=59;Dels=0.00;FS=42.969;HaplotypeScore=15.6179;MLEAC=1;MLEAF=0.500;MQ=21.70;MQ0=2;MQRankSum=-2.652;QD=0.88;ReadPosRankSum=-0.163;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,18:59:82:82,0,209 chrIV 1525272 . A G 163.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;DP=53;Dels=0.00;FS=19.567;HaplotypeScore=11.7981;MLEAC=1;MLEAF=0.500;MQ=20.97;MQ0=2;MQRankSum=-2.121;QD=3.08;ReadPosRankSum=2.368;SB=-8.001e+01 GT:AD:DP:GQ:PL 0/1:9,44:53:43:193,0,43 chrIV 1525274 . T A 173.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DP=44;Dels=0.00;FS=17.889;HaplotypeScore=6.6833;MLEAC=2;MLEAF=1.00;MQ=21.18;MQ0=2;MQRankSum=1.093;QD=3.93;ReadPosRankSum=1.521;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:4,40:44:24:206,24,0 chrIV 1525292 . A G 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.491;DP=34;Dels=0.00;FS=38.030;HaplotypeScore=28.2742;MLEAC=1;MLEAF=0.500;MQ=24.15;MQ0=0;MQRankSum=1.972;QD=0.77;ReadPosRankSum=2.128;SB=-7.795e+00 GT:AD:DP:GQ:PL 0/1:11,15:34:56:56,0,77 chrIV 1525313 . T A 100.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.261;DP=29;Dels=0.00;FS=13.424;HaplotypeScore=5.6010;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;MQRankSum=0.946;QD=3.46;ReadPosRankSum=-1.576;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:1,21:29:15:133,15,0 chrIV 1525317 . A T 76.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.371;DP=29;Dels=0.03;FS=6.021;HaplotypeScore=15.5061;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;MQRankSum=2.653;QD=2.64;ReadPosRankSum=1.273;SB=2.54 GT:AD:DP:GQ:PL 1/1:7,21:28:12:109,12,0 chrIV 1525324 . G T 90.42 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.955;DP=25;Dels=0.00;FS=6.990;HaplotypeScore=7.4512;MLEAC=1;MLEAF=0.500;MQ=27.01;MQ0=0;MQRankSum=1.936;QD=3.62;ReadPosRankSum=-0.577;SB=-3.425e+00 GT:AD:DP:GQ:PL 0/1:5,20:25:7:120,0,7 chrIV 1525431 . G T 11.40 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.056;DP=82;Dels=0.02;FS=2.669;HaplotypeScore=104.6056;MLEAC=1;MLEAF=0.500;MQ=25.52;MQ0=4;MQRankSum=1.085;QD=0.14;ReadPosRankSum=2.455;SB=-7.465e-02 GT:AD:DP:GQ:PL 0/1:52,28:80:15:41,0,15 chrIV 1525472 . A C 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.646;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.55;MQ0=1;MQRankSum=-2.117;QD=1.13;ReadPosRankSum=2.646;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,18:21:6:55,6,0 chrIV 1525481 . T C 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.61;MQ0=1;QD=0.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:6:48,6,0 chrIV 1525482 . G T 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.61;MQ0=1;QD=0.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:6:48,6,0 chrIX 8405 . A T 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.955;DP=357;Dels=0.00;FS=6.505;HaplotypeScore=11.9197;MLEAC=1;MLEAF=0.500;MQ=6.17;MQ0=289;MQRankSum=-1.997;QD=0.14;ReadPosRankSum=-0.891;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:235,122:357:80:80,0,180 chrIX 19396 . C T 3312.01 filter AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=11.6264;MLEAC=2;MLEAF=1.00;MQ=24.43;MQ0=108;QD=13.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,239:242:99:3312,369,0 chrIX 19977 . T A 10697.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=511;Dels=0.00;FS=3.097;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=2;MQRankSum=1.452;QD=20.93;ReadPosRankSum=1.657;SB=-5.500e+03 GT:AD:DP:GQ:PL 1/1:1,510:511:99:10697,1188,0 chrIX 19982 . C T 2175.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.657;DP=513;Dels=0.00;FS=1.088;HaplotypeScore=23.6926;MLEAC=1;MLEAF=0.500;MQ=45.73;MQ0=2;MQRankSum=-2.396;QD=4.24;ReadPosRankSum=-0.820;SB=-1.044e+03 GT:AD:DP:GQ:PL 0/1:340,172:513:99:2205,0,5719 chrIX 20039 . A C 7268.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.356;DP=472;Dels=0.00;FS=4.248;HaplotypeScore=45.9017;MLEAC=2;MLEAF=1.00;MQ=37.46;MQ0=8;MQRankSum=-2.852;QD=15.40;ReadPosRankSum=2.395;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:5,460:472:99:7268,800,0 chrIX 20260 . G A 4388.01 filter AC=2;AF=1.00;AN=2;DP=430;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=21.20;MQ0=33;QD=10.20;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,430:430:99:4388,474,0 chrIX 20296 . C T 1626 filter AC=2;AF=1.00;AN=2;DP=412;Dels=0.00;FS=0.000;HaplotypeScore=5.2752;MLEAC=2;MLEAF=1.00;MQ=17.45;MQ0=48;QD=3.95;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,407:412:99:1659,186,0 chrIX 20299 . A G 1906 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=411;Dels=0.00;FS=0.000;HaplotypeScore=5.2264;MLEAC=2;MLEAF=1.00;MQ=18.68;MQ0=48;MQRankSum=-1.639;QD=4.64;ReadPosRankSum=2.354;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:2,406:411:99:1939,231,0 chrIX 20325 . A G 6450.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.586;DP=534;Dels=0.00;FS=2.251;HaplotypeScore=36.3853;MLEAC=2;MLEAF=1.00;MQ=39.09;MQ0=47;MQRankSum=1.888;QD=12.08;ReadPosRankSum=3.838;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:5,524:534:99:6450,750,0 chrIX 20494 . A G 10095.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=436;Dels=0.00;FS=17.517;HaplotypeScore=31.6954;MLEAC=2;MLEAF=1.00;MQ=36.00;MQ0=6;MQRankSum=2.334;QD=23.15;ReadPosRankSum=2.421;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:2,429:436:99:10095,1161,0 chrIX 20726 . G T 3654.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.639;DP=775;Dels=0.00;FS=0.888;HaplotypeScore=46.1754;MLEAC=1;MLEAF=0.500;MQ=45.77;MQ0=0;MQRankSum=-5.262;QD=4.71;ReadPosRankSum=0.570;SB=-1.858e+03 GT:AD:DP:GQ:PL 0/1:531,239:775:99:3654,0,9170 chrIX 20821 . C T 161.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.146;DP=571;Dels=0.00;FS=66.180;HaplotypeScore=64.0178;MLEAC=1;MLEAF=0.500;MQ=49.70;MQ0=1;MQRankSum=-10.178;QD=0.28;ReadPosRankSum=-1.808;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:479,88:571:99:191,0,8592 chrIX 20887 . A G 110.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.601;DP=469;Dels=0.00;FS=2.376;HaplotypeScore=12.6624;MLEAC=1;MLEAF=0.500;MQ=48.60;MQ0=5;MQRankSum=-11.083;QD=0.23;ReadPosRankSum=0.830;SB=-1.550e+02 GT:AD:DP:GQ:PL 0/1:391,78:469:99:140,0,6383 chrIX 20889 . C T 8365.01 filter AC=2;AF=1.00;AN=2;DP=466;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=5;QD=17.95;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,464:466:99:8365,916,0 chrIX 20950 . T C 2494.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.104;DP=463;Dels=0.00;FS=18.269;HaplotypeScore=14.3017;MLEAC=1;MLEAF=0.500;MQ=30.93;MQ0=76;MQRankSum=0.383;QD=5.39;ReadPosRankSum=-1.382;SB=-5.200e+02 GT:AD:DP:GQ:PL 0/1:264,196:463:99:2524,0,3356 chrIX 20962 . A G 2101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.718;DP=469;Dels=0.00;FS=11.071;HaplotypeScore=9.7084;MLEAC=1;MLEAF=0.500;MQ=27.64;MQ0=103;MQRankSum=-0.032;QD=4.48;ReadPosRankSum=-0.481;SB=-3.190e+02 GT:AD:DP:GQ:PL 0/1:274,192:469:99:2131,0,3143 chrIX 21065 . T C 4887.01 filter AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=37.26;MQ0=13;QD=17.39;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:4887,564,0 chrIX 21289 . C T 2858 filter AC=2;AF=1.00;AN=2;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=41.3757;MLEAC=2;MLEAF=1.00;MQ=29.77;MQ0=13;QD=16.43;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:2891,330,0 chrIX 21741 . A G 5802.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=283;Dels=0.00;FS=3.310;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=31.25;MQ0=28;MQRankSum=-0.496;QD=20.50;ReadPosRankSum=1.718;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:1,281:283:99:5802,660,0 chrIX 21951 . T C 345.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;DP=180;Dels=0.00;FS=202.370;HaplotypeScore=15.1428;MLEAC=1;MLEAF=0.500;MQ=19.61;MQ0=22;MQRankSum=2.949;QD=1.92;ReadPosRankSum=-0.173;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:142,36:180:99:375,0,1085 chrIX 22273 . T C 37.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.017;DP=19;Dels=0.00;FS=15.441;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.98;MQ0=11;MQRankSum=2.017;QD=2.00;ReadPosRankSum=1.368;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:15,4:19:9:70,9,0 chrIX 22414 . T C 389 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.52;MQ0=7;QD=6.48;SB=-6.587e-03 GT:AD:DP:GQ:PL 1/1:1,59:60:51:422,51,0 chrIX 22417 . T G 383 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.192;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.46;MQ0=7;MQRankSum=-1.476;QD=6.28;ReadPosRankSum=0.257;SB=-5.564e-03 GT:AD:DP:GQ:PL 1/1:6,55:61:48:416,48,0 chrIX 22497 . T C 377 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.142;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=16.67;MQ0=29;MQRankSum=0.807;QD=5.71;ReadPosRankSum=2.810;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:3,63:66:48:410,48,0 chrIX 22598 . C T 598.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;DP=133;Dels=0.00;FS=17.558;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=43.85;MQ0=11;MQRankSum=-5.863;QD=4.50;ReadPosRankSum=0.800;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,45:133:99:628,0,1739 chrIX 22614 . T C 1173.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.665;DP=108;Dels=0.00;FS=13.664;HaplotypeScore=5.4156;MLEAC=1;MLEAF=0.500;MQ=44.06;MQ0=7;MQRankSum=5.682;QD=10.86;ReadPosRankSum=-0.130;SB=-1.580e+02 GT:AD:DP:GQ:PL 0/1:43,65:108:99:1203,0,715 chrIX 22632 . A G 727.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;DP=91;Dels=0.00;FS=17.318;HaplotypeScore=5.6262;MLEAC=1;MLEAF=0.500;MQ=39.99;MQ0=9;MQRankSum=3.664;QD=7.99;ReadPosRankSum=0.083;SB=-1.340e+02 GT:AD:DP:GQ:PL 0/1:40,51:91:99:757,0,623 chrIX 22647 . A T 633.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.535;DP=101;Dels=0.00;FS=17.423;HaplotypeScore=7.9848;MLEAC=1;MLEAF=0.500;MQ=35.55;MQ0=16;MQRankSum=1.903;QD=6.27;ReadPosRankSum=-0.384;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/1:45,55:101:99:663,0,662 chrIX 23327 . G A 1439.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.399;DP=179;Dels=0.00;FS=1.040;HaplotypeScore=25.4355;MLEAC=1;MLEAF=0.500;MQ=46.05;MQ0=12;MQRankSum=1.048;QD=8.04;ReadPosRankSum=0.389;SB=-1.440e+02 GT:AD:DP:GQ:PL 0/1:83,94:179:99:1469,0,1274 chrIX 23780 . T C 402.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.795;DP=717;Dels=0.00;FS=29.874;HaplotypeScore=27.8762;MLEAC=1;MLEAF=0.500;MQ=51.02;MQ0=0;MQRankSum=-20.616;QD=0.56;ReadPosRankSum=-0.172;SB=-1.094e+03 GT:AD:DP:GQ:PL 0/1:454,258:717:99:432,0,8716 chrIX 23785 . G T 679.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.851;DP=747;Dels=0.00;FS=42.107;HaplotypeScore=38.6445;MLEAC=1;MLEAF=0.500;MQ=51.07;MQ0=0;MQRankSum=-20.347;QD=0.91;ReadPosRankSum=1.408;SB=-1.338e+03 GT:AD:DP:GQ:PL 0/1:461,283:747:99:709,0,8753 chrIX 23794 . G A 1143.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.987;DP=783;Dels=0.00;FS=31.019;HaplotypeScore=36.4307;MLEAC=1;MLEAF=0.500;MQ=50.85;MQ0=0;MQRankSum=-20.420;QD=1.46;ReadPosRankSum=3.948;SB=-1.536e+03 GT:AD:DP:GQ:PL 0/1:469,313:783:99:1173,0,8303 chrIX 24172 . A G 7093.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-12.232;DP=645;Dels=0.00;FS=1.639;HaplotypeScore=39.9412;MLEAC=1;MLEAF=0.500;MQ=56.94;MQ0=0;MQRankSum=5.879;QD=11.00;ReadPosRankSum=-2.097;SB=-3.359e+03 GT:AD:DP:GQ:PL 0/1:258,385:645:99:7093,0,4274 chrIX 24646 . A G 4773.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.384;DP=642;Dels=0.00;FS=6.522;HaplotypeScore=45.4644;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=0.496;QD=7.43;ReadPosRankSum=-1.490;SB=-2.029e+03 GT:AD:DP:GQ:PL 0/1:332,306:642:99:4773,0,6702 chrIX 24988 . G A 3463.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;DP=427;Dels=0.00;FS=0.000;HaplotypeScore=42.4967;MLEAC=1;MLEAF=0.500;MQ=59.68;MQ0=0;MQRankSum=0.331;QD=8.11;ReadPosRankSum=0.264;SB=-1.867e+03 GT:AD:DP:GQ:PL 0/1:213,212:427:99:3463,0,3385 chrIX 25066 . A G 10904.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=476;Dels=0.00;FS=13.010;HaplotypeScore=33.3036;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.947;QD=22.91;ReadPosRankSum=2.947;SB=-4.282e+03 GT:AD:DP:GQ:PL 1/1:3,473:476:99:10904,1230,0 chrIX 25228 . G A 6011.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;DP=434;Dels=0.00;FS=284.833;HaplotypeScore=29.7596;MLEAC=1;MLEAF=0.500;MQ=59.02;MQ0=0;MQRankSum=-0.220;QD=13.85;ReadPosRankSum=1.199;SB=-2.830e+03 GT:AD:DP:GQ:PL 0/1:131,301:434:99:6011,0,1731 chrIX 25318 . G A 592.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.623;DP=432;Dels=0.00;FS=138.126;HaplotypeScore=25.8350;MLEAC=1;MLEAF=0.500;MQ=47.09;MQ0=0;MQRankSum=-8.207;QD=1.37;ReadPosRankSum=-3.077;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:341,89:432:99:622,0,6593 chrIX 25320 . A T 570.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.849;DP=423;Dels=0.00;FS=108.210;HaplotypeScore=29.8021;MLEAC=1;MLEAF=0.500;MQ=46.86;MQ0=0;MQRankSum=-10.682;QD=1.35;ReadPosRankSum=-3.269;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:342,81:423:99:600,0,6684 chrIX 25324 . G A 449.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;DP=408;Dels=0.00;FS=120.668;HaplotypeScore=26.6218;MLEAC=1;MLEAF=0.500;MQ=46.51;MQ0=0;MQRankSum=-10.135;QD=1.10;ReadPosRankSum=-4.874;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:333,74:408:99:479,0,6482 chrIX 25327 . T C 197.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.273;DP=397;Dels=0.00;FS=114.992;HaplotypeScore=26.6218;MLEAC=1;MLEAF=0.500;MQ=46.68;MQ0=0;MQRankSum=-10.170;QD=0.50;ReadPosRankSum=-5.559;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:331,66:397:99:227,0,6357 chrIX 25331 . C A 103.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;DP=379;Dels=0.00;FS=133.687;HaplotypeScore=22.2178;MLEAC=1;MLEAF=0.500;MQ=46.90;MQ0=0;MQRankSum=-9.441;QD=0.27;ReadPosRankSum=-5.759;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:323,55:379:99:133,0,6376 chrIX 25418 . T C 4864.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.3343;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=22.52;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4864,546,0 chrIX 25544 . T A 2225 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=123;Dels=0.00;FS=37.698;HaplotypeScore=11.3196;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;MQRankSum=-0.824;QD=18.09;ReadPosRankSum=2.359;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,107:123:99:2258,252,0 chrIX 25549 . A G 558 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.686;DP=109;Dels=0.00;FS=172.071;HaplotypeScore=61.4432;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;MQRankSum=4.543;QD=5.12;ReadPosRankSum=3.268;SB=-8.252e-03 GT:AD:DP:GQ:PL 1/1:20,89:109:37:591,37,0 chrIX 25551 . T A 500.17 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=5.484;DP=110;Dels=0.00;FS=203.206;HaplotypeScore=60.0762;MLEAC=2;MLEAF=1.00;MQ=26.57;MQ0=0;MQRankSum=5.871;QD=4.55;ReadPosRankSum=2.784;SB=-1.765e-01 GT:AD:DP:GQ:PL 1/1:21,89:110:17:533,17,0 chrIX 25569 . T C 1172 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-6.566;DP=83;Dels=0.00;FS=210.343;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.28;MQ0=0;MQRankSum=6.467;QD=14.12;ReadPosRankSum=-4.412;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:25,58:83:99:1205,105,0 chrIX 25586 . T C 630 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.30;MQ0=0;QD=9.40;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:1,66:67:75:663,75,0 chrIX 25593 . C T 339 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.61;MQ0=0;QD=8.07;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,41:42:42:372,42,0 chrIX 25594 . T G 276.04 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=43;Dels=0.00;FS=12.041;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=20.66;MQ0=0;MQRankSum=1.519;QD=6.42;ReadPosRankSum=1.519;SB=6.95 GT:AD:DP:GQ:PL 1/1:1,16:43:36:309,36,0 chrIX 25597 . G T 246.11 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;DP=46;Dels=0.00;FS=117.090;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=20.80;MQ0=0;MQRankSum=4.944;QD=5.35;ReadPosRankSum=-4.358;SB=-3.124e+00 GT:AD:DP:GQ:PL 0/1:31,15:46:13:276,0,13 chrIX 25712 . T A,C 790.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.735;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=1,1;MLEAF=0.500,0.500;MQ=24.51;MQ0=0;MQRankSum=3.218;QD=10.68;ReadPosRankSum=1.447;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:10,14,50:74:99:850,634,607,216,0,132 chrIX 25717 . A G 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.226;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=21.6690;MLEAC=1;MLEAF=0.500;MQ=23.62;MQ0=0;MQRankSum=4.108;QD=0.43;ReadPosRankSum=-4.164;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,12:77:63:63,0,751 chrIX 25765 . A G 871 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.798;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=22.89;MQ0=0;MQRankSum=2.085;QD=11.61;ReadPosRankSum=0.112;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,67:75:99:904,99,0 chrIX 25802 . A G 401 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=5.14;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,77:77:48:434,48,0 chrIX 25804 . G T 397 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=5.09;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,77:77:48:430,48,0 chrIX 25807 . T A 592 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.682;DP=98;Dels=0.00;FS=3.888;HaplotypeScore=1.9788;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;MQRankSum=-2.704;QD=6.04;ReadPosRankSum=3.697;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:6,92:98:69:625,69,0 chrIX 25813 . G A 970 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.075;DP=119;Dels=0.00;FS=7.220;HaplotypeScore=5.1770;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=0;MQRankSum=-1.254;QD=8.15;ReadPosRankSum=0.836;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,115:119:99:1003,111,0 chrIX 25819 . G A 1280 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.7084;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=8.83;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,142:145:99:1313,147,0 chrIX 25867 . C T 4002.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=9.3959;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;QD=17.03;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4002,438,0 chrIX 26175 . A G 2995 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.86;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3028,348,0 chrIX 26218 . A G 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=3.081;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=1.006;QD=19.21;ReadPosRankSum=1.704;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2434,273,0 chrIX 26226 . A G 2141 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.13;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2174,252,0 chrIX 26294 . G A 3087 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=17.3591;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=21.14;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3120,345,0 chrIX 26329 . T C 2952 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=22.36;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2985,336,0 chrIX 26381 . T C 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=124;Dels=0.00;FS=8.603;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;MQRankSum=0.930;QD=20.10;ReadPosRankSum=2.290;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2525,285,0 chrIX 26421 . C T 2394 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;QD=21.76;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2427,267,0 chrIX 26499 . T A 2485 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.38;MQ0=0;QD=20.04;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2518,276,0 chrIX 26507 . G A 2064 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.23;MQ0=0;QD=18.76;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2097,234,0 chrIX 26534 . G A 1054 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=39.2391;MLEAC=2;MLEAF=1.00;MQ=33.48;MQ0=0;QD=15.28;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1087,120,0 chrIX 26556 . C G 542 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=11.29;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:66:575,66,0 chrIX 26564 . A G 327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.468;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;MQRankSum=1.071;QD=7.43;ReadPosRankSum=2.840;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:3,41:44:42:360,42,0 chrIX 26575 . A G 515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=0;MQRankSum=-2.525;QD=11.44;ReadPosRankSum=2.844;SB=-9.601e+01 GT:AD:DP:GQ:PL 1/1:3,42:45:63:548,63,0 chrIX 26591 . T A 619 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;QD=12.63;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:72:652,72,0 chrIX 26620 . T C 832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=71;Dels=0.00;FS=4.895;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=0;MQRankSum=1.488;QD=11.72;ReadPosRankSum=1.683;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:96:865,96,0 chrIX 26633 . A G 974 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;QD=12.33;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1007,117,0 chrIX 26640 . T C 1030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=87;Dels=0.00;FS=9.055;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.39;MQ0=0;MQRankSum=-2.337;QD=11.84;ReadPosRankSum=2.393;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1063,123,0 chrIX 26667 . T C 1087 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.16;MQ0=0;QD=12.79;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1120,129,0 chrIX 26668 . C T 1103 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.64;MQ0=0;QD=12.83;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1136,129,0 chrIX 26686 . A G 1185 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.16;MQ0=0;QD=12.22;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1218,141,0 chrIX 26716 . G A 994 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.37;MQ0=0;QD=13.25;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1027,117,0 chrIX 26728 . C T 832 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.73;MQ0=0;QD=12.80;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:865,99,0 chrIX 26761 . T C 457 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=0;QD=8.62;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:57:490,57,0 chrIX 26765 . G A 343 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=0;QD=7.46;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:42:376,42,0 chrIX 26783 . G C 256 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.26;MQ0=0;QD=6.92;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:33:289,33,0 chrIX 26788 . A G 201.01 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.91;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,34:34:27:234,27,0 chrIX 26799 . A G 144.06 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=4.80;SB=-6.507e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:21:177,21,0 chrIX 26801 . T C 160.03 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=5.33;SB=-6.504e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:24:193,24,0 chrIX 26811 . C T 400 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.52;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:51:433,51,0 chrIX 26833 . A G 707 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=34.52;MQ0=0;QD=12.85;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:84:740,84,0 chrIX 26895 . C T 2041 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=72.6197;MLEAC=2;MLEAF=1.00;MQ=34.82;MQ0=0;QD=22.93;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2074,228,0 chrIX 26915 . C T 2105 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=36.11;MQ0=0;QD=22.16;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2138,246,0 chrIX 26982 . C T 2172 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0438;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=23.11;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2205,249,0 chrIX 27023 . A G 1674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=3.623;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=33.09;MQ0=0;MQRankSum=-0.319;QD=22.03;ReadPosRankSum=1.687;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1707,198,0 chrIX 27046 . A G 1319 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.77;MQ0=0;QD=18.58;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1352,159,0 chrIX 27068 . G A 1015 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=0;QD=15.15;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1048,120,0 chrIX 27090 . A G 697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=74;Dels=0.00;FS=12.964;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.75;MQ0=0;MQRankSum=-2.878;QD=9.42;ReadPosRankSum=2.905;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:3,71:74:84:730,84,0 chrIX 27099 . C T 783 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=10.73;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:90:816,90,0 chrIX 27106 . G A 609 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.50;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:72:642,72,0 chrIX 27108 . A G 582 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.03;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:72:615,72,0 chrIX 27114 . A C 426 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.34;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:60:459,60,0 chrIX 27118 . C T 624 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.79;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:72:657,72,0 chrIX 27129 . A G 717 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.51;MQ0=0;QD=8.15;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:87:750,87,0 chrIX 27132 . C G 752 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=35.71;MQ0=0;QD=8.45;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:93:785,93,0 chrIX 27219 . A G 1271 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.047;DP=118;Dels=0.00;FS=7.256;HaplotypeScore=2.9453;MLEAC=2;MLEAF=1.00;MQ=35.13;MQ0=0;MQRankSum=-3.154;QD=10.77;ReadPosRankSum=2.444;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:6,112:118:99:1304,150,0 chrIX 27224 . G A 1197 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.519;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.9186;MLEAC=2;MLEAF=1.00;MQ=33.97;MQ0=0;MQRankSum=-3.217;QD=10.14;ReadPosRankSum=4.127;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:8,110:118:99:1230,144,0 chrIX 27227 . A G 1181 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.261;DP=117;Dels=0.00;FS=20.386;HaplotypeScore=4.9465;MLEAC=2;MLEAF=1.00;MQ=32.89;MQ0=0;MQRankSum=-2.463;QD=10.09;ReadPosRankSum=3.100;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:4,109:117:99:1214,141,0 chrIX 27230 . A G 1158 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.422;DP=112;Dels=0.00;FS=19.250;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;MQRankSum=-0.212;QD=10.34;ReadPosRankSum=2.642;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:4,108:112:99:1191,138,0 chrIX 27241 . G A 1334 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;QD=12.13;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1367,156,0 chrIX 27264 . T C 1916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=35.11;MQ0=0;MQRankSum=-1.592;QD=15.45;ReadPosRankSum=1.704;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:1949,219,0 chrIX 27378 . C A 3479.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.9057;MLEAC=2;MLEAF=1.00;MQ=38.27;MQ0=0;QD=21.48;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3479,399,0 chrIX 27468 . T C 4705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.385;DP=211;Dels=0.00;FS=5.242;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-3.427;QD=22.30;ReadPosRankSum=3.419;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:4,206:211:99:4705,531,0 chrIX 27495 . G T 4569.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=3.8234;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=20.77;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4569,501,0 chrIX 27554 . A G 917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.138;DP=226;Dels=0.00;FS=7.394;HaplotypeScore=300.0142;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=0;MQRankSum=8.343;QD=4.06;ReadPosRankSum=-12.738;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:122,104:226:69:950,69,0 chrIX 27571 . G T 484 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;QD=2.52;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:57:517,57,0 chrIX 27591 . T A 1288 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=40.94;MQ0=0;QD=6.74;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:1321,144,0 chrIX 27618 . A T 2448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=197;Dels=0.00;FS=2.847;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;MQRankSum=1.228;QD=12.43;ReadPosRankSum=2.387;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:2481,285,0 chrIX 27620 . T G 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=200;Dels=0.00;FS=7.992;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;MQRankSum=-1.541;QD=13.67;ReadPosRankSum=2.400;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:2767,303,0 chrIX 27707 . G T 3812.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=22.42;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3812,420,0 chrIX 27757 . T G 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=145;Dels=0.00;FS=3.949;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;MQRankSum=-1.419;QD=22.61;ReadPosRankSum=1.708;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3279,375,0 chrIX 27850 . G A 3546.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=21.89;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3546,393,0 chrIX 27959 . A G 1795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=83.4464;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;MQRankSum=-0.545;QD=16.62;ReadPosRankSum=1.668;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1828,204,0 chrIX 27963 . C A 1768 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=88.6417;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=16.07;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1801,204,0 chrIX 27994 . T C 2102 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=15.01;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2135,237,0 chrIX 28070 . T C 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=116;Dels=0.00;FS=6.366;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;MQRankSum=0.944;QD=15.98;ReadPosRankSum=2.365;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:1887,216,0 chrIX 28077 . A T 1891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;MQRankSum=-0.949;QD=16.44;ReadPosRankSum=1.642;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1924,210,0 chrIX 28083 . C T 1682 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.96;MQ0=0;QD=15.87;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1715,192,0 chrIX 28102 . T C 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.39;MQ0=0;MQRankSum=-0.921;QD=14.77;ReadPosRankSum=1.701;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1672,186,0 chrIX 28108 . G A 1726 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;QD=14.26;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1759,195,0 chrIX 28161 . G T 2805 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.21;MQ0=0;QD=20.18;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2838,327,0 chrIX 28182 . A T 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=3.670;HaplotypeScore=2.6297;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;MQRankSum=0.198;QD=20.44;ReadPosRankSum=1.709;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3078,362,0 chrIX 28183 . G A 3004 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.6515;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=20.16;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3037,357,0 chrIX 28214 . T C 3327.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.1994;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=20.29;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3327,389,0 chrIX 28282 . T G 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.715;DP=146;Dels=0.00;FS=4.393;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=1.151;QD=20.59;ReadPosRankSum=0.981;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,142:146:99:3039,331,0 chrIX 28374 . C T 2400 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=19.51;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2433,270,0 chrIX 28379 . C G 2163 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=19.49;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2196,255,0 chrIX 28412 . T G 2199 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=19.12;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2232,261,0 chrIX 28464 . G A 3010 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.81;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3043,330,0 chrIX 28515 . G A 2095 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.54;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2128,237,0 chrIX 28576 . C T 2183 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=21.61;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2216,249,0 chrIX 28601 . C A 2413 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=19.00;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2446,270,0 chrIX 28619 . A G 2695 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=19.39;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2728,300,0 chrIX 28976 . G A 3095 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=13.4372;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.18;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3128,339,0 chrIX 29193 . G A 3735.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.79;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3735,420,0 chrIX 29272 . A T 5789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=250;Dels=0.00;FS=3.170;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.814;QD=23.16;ReadPosRankSum=1.676;SB=-3.134e+03 GT:AD:DP:GQ:PL 1/1:1,249:250:99:5789,642,0 chrIX 29414 . G T 4399.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.3315;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.52;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4399,498,0 chrIX 29619 . T G 3573.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.92;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3573,402,0 chrIX 29725 . T C 3657.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.71;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3657,411,0 chrIX 29750 . C G 3622.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.6455;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.06;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,167:172:99:3622,399,0 chrIX 29856 . C T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.4692;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.19;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3861,435,0 chrIX 29928 . T G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.27;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3267,381,0 chrIX 30066 . G C 4039.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.31;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,177:181:99:4039,462,0 chrIX 30093 . G A 3580.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.57;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3580,393,0 chrIX 30264 . C T 3189 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.5035;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.45;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3222,363,0 chrIX 30284 . A G 2815 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.89;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2848,324,0 chrIX 30345 . A G 2877 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=23.97;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2910,327,0 chrIX 30497 . C T 2539 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=24.18;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2572,282,0 chrIX 30598 . G A 2601 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=22.82;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2634,282,0 chrIX 30599 . G A 2532 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=22.41;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2565,279,0 chrIX 30609 . A C 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.735;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.21;MQ0=0;MQRankSum=-1.564;QD=19.98;ReadPosRankSum=2.926;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1931,225,0 chrIX 30680 . T A 978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=3.603;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=47.16;MQ0=0;MQRankSum=-0.221;QD=10.40;ReadPosRankSum=1.695;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1011,111,0 chrIX 30792 . A G 640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.809;DP=78;Dels=0.00;FS=40.943;HaplotypeScore=25.5329;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;MQRankSum=1.798;QD=8.21;ReadPosRankSum=1.468;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:36,42:78:58:673,58,0 chrIX 30821 . A T 117.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.091;DP=82;Dels=0.00;FS=14.901;HaplotypeScore=62.2188;MLEAC=1;MLEAF=0.500;MQ=31.99;MQ0=0;MQRankSum=-0.081;QD=1.43;ReadPosRankSum=3.109;SB=-1.740e+02 GT:AD:DP:GQ:PL 0/1:22,58:82:55:147,0,55 chrIX 30845 . C T 1122 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.8714;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=11.00;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1155,126,0 chrIX 31082 . A T 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.928;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=1.240;QD=23.50;ReadPosRankSum=0.548;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3689,411,0 chrIX 31217 . G A 3783.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3783,432,0 chrIX 31271 . A G 3185 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3218,354,0 chrIX 32753 . T A 4228.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.87;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4228,468,0 chrIX 32809 . C T 3851.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.07;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3851,420,0 chrIX 32963 . C G 4286.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=23.17;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4286,480,0 chrIX 33147 . T C 2452 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=16.79;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2485,282,0 chrIX 33211 . T C 1610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=127;Dels=0.00;FS=9.452;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;MQRankSum=-1.040;QD=12.68;ReadPosRankSum=2.945;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:1643,183,0 chrIX 33261 . T C 2530 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.59;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2563,288,0 chrIX 35030 . G A 2288 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=18.02;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2321,264,0 chrIX 35042 . C T 2276 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=16.61;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2309,264,0 chrIX 35770 . T C 4229.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.80;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4229,486,0 chrIX 36762 . C T 3671.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.5593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3671,411,0 chrIX 37100 . C T 2434 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.13;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2467,273,0 chrIX 37621 . C T 6816.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=9.7413;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=22.95;SB=-3.672e+03 GT:AD:DP:GQ:PL 1/1:0,296:297:99:6816,747,0 chrIX 37634 . A C 6212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.382;DP=289;Dels=0.00;FS=9.097;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.664;QD=21.49;ReadPosRankSum=3.382;SB=-3.571e+03 GT:AD:DP:GQ:PL 1/1:4,283:289:99:6212,714,0 chrIX 37646 . C G 5828.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.27;SB=-3.134e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:5828,666,0 chrIX 39153 . T C 1589 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1622,186,0 chrIX 39195 . C T 1544 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1577,174,0 chrIX 39277 . T A 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.471;QD=23.31;ReadPosRankSum=1.667;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2504,285,0 chrIX 39737 . T C 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=140;Dels=0.00;FS=3.074;HaplotypeScore=7.3147;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.276;QD=21.74;ReadPosRankSum=1.707;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:3077,348,0 chrIX 40145 . G A 3272.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.88;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3272,363,0 chrIX 40190 . A G 3218.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3251,363,0 chrIX 40512 . G A 4536.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.2036;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.79;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4536,492,0 chrIX 40860 . A G 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=4.251;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.851;QD=22.01;ReadPosRankSum=1.652;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3829,441,0 chrIX 41223 . A G 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=187;Dels=0.00;FS=5.758;HaplotypeScore=10.3126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.178;QD=21.92;ReadPosRankSum=2.962;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:3,183:187:99:4099,462,0 chrIX 41346 . G A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=15.6992;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.35;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3373,375,0 chrIX 41898 . T C 4915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=226;Dels=0.00;FS=2.941;HaplotypeScore=13.6821;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.123;QD=21.75;ReadPosRankSum=2.274;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:2,222:226:99:4915,549,0 chrIX 42016 . A G 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=187;Dels=0.00;FS=2.551;HaplotypeScore=13.6412;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.440;QD=20.99;ReadPosRankSum=2.962;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:3,182:187:99:3925,435,0 chrIX 42275 . A G 2957 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2990,333,0 chrIX 42365 . A G 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.425;QD=24.29;ReadPosRankSum=1.699;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2608,288,0 chrIX 43318 . G A 2378 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.32;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2411,273,0 chrIX 43324 . C G 2165 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.68;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2198,261,0 chrIX 43393 . A G 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.105;QD=22.59;ReadPosRankSum=1.702;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2653,300,0 chrIX 43493 . T C 2980 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.41;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3013,336,0 chrIX 43748 . C T 2546 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.53;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2579,279,0 chrIX 43753 . C A 2363 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3218;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.37;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2396,261,0 chrIX 43995 . C T 2016 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.65;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2049,234,0 chrIX 44293 . G A 2953 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=14.7788;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.51;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2986,339,0 chrIX 45203 . A G 2549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.027;QD=22.56;ReadPosRankSum=1.701;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2582,300,0 chrIX 45244 . C T 2391 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.35;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2424,276,0 chrIX 45367 . G A 2320 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.89;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2353,258,0 chrIX 45547 . T C 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.610;DP=125;Dels=0.00;FS=8.081;HaplotypeScore=5.1168;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=1.354;QD=17.62;ReadPosRankSum=3.748;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:5,120:125:99:2236,255,0 chrIX 45559 . A C 2322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.406;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.8613;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.244;QD=17.86;ReadPosRankSum=1.489;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2355,253,0 chrIX 45607 . A G 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=4.280;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-1.098;QD=20.24;ReadPosRankSum=1.708;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:2948,339,0 chrIX 45691 . T G 4270.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=22.12;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4270,480,0 chrIX 45705 . G A 4354.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.7471;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.66;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4354,480,0 chrIX 45746 . A G 3864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=177;Dels=0.00;FS=4.091;HaplotypeScore=13.1279;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.147;QD=21.83;ReadPosRankSum=1.713;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3864,435,0 chrIX 45805 . T C 4083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=174;Dels=0.00;FS=3.035;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.840;QD=23.47;ReadPosRankSum=2.379;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:4083,459,0 chrIX 45859 . C T 4683.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.30;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4683,522,0 chrIX 45886 . A G 4720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.387;DP=215;Dels=0.00;FS=7.971;HaplotypeScore=7.4785;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=0.322;QD=21.95;ReadPosRankSum=3.371;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:4,210:215:99:4720,531,0 chrIX 45981 . G A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=22.92;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3392,366,0 chrIX 45992 . A G 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.801;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=0.094;QD=20.83;ReadPosRankSum=1.340;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3054,319,0 chrIX 46057 . C G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.25;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3263,389,0 chrIX 46102 . C A 4120.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.3476;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.38;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4120,447,0 chrIX 46189 . T C 4210.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.20;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4210,489,0 chrIX 46556 . C T 4349.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.8576;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.42;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4349,471,0 chrIX 46584 . A G 3737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.166;QD=20.99;ReadPosRankSum=1.673;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3737,420,0 chrIX 46970 . T C 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.600;QD=22.14;ReadPosRankSum=1.709;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3410,381,0 chrIX 47054 . G T 2834 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.31;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2867,318,0 chrIX 47108 . A G 3062 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.26;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3095,360,0 chrIX 47117 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.079;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=0.129;QD=19.64;ReadPosRankSum=1.475;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3456,359,0 chrIX 47493 . G A 4871.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:4871,552,0 chrIX 48243 . C T 5004.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=15.0055;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.44;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5004,552,0 chrIX 48597 . A C 6502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=290;Dels=0.00;FS=6.374;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.437;QD=22.42;ReadPosRankSum=2.390;SB=-3.581e+03 GT:AD:DP:GQ:PL 1/1:2,287:290:99:6502,738,0 chrIX 48813 . A G 6173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=272;Dels=0.00;FS=5.911;HaplotypeScore=13.6105;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.399;QD=22.69;ReadPosRankSum=2.952;SB=-3.122e+03 GT:AD:DP:GQ:PL 1/1:3,269:272:99:6173,699,0 chrIX 48876 . A C 3934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=217;Dels=0.00;FS=2.910;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=-0.176;QD=18.13;ReadPosRankSum=2.381;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:3934,456,0 chrIX 48879 . C T 3999.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=18.95;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:3999,444,0 chrIX 49422 . T C 2418 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.67;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2451,279,0 chrIX 49521 . G A 803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.344;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=114.2498;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;MQRankSum=-0.157;QD=5.58;ReadPosRankSum=-1.369;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:93:836,93,0 chrIX 49547 . C G 1042 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=6.95;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:1075,123,0 chrIX 49550 . T C 1036 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=0;QD=6.86;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:1069,120,0 chrIX 49641 . T G 3454.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=18.3103;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=19.19;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3454,411,0 chrIX 49836 . A G 5843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=256;Dels=0.00;FS=3.079;HaplotypeScore=14.4650;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.341;QD=22.82;ReadPosRankSum=1.650;SB=-3.244e+03 GT:AD:DP:GQ:PL 1/1:1,253:256:99:5843,651,0 chrIX 50097 . C T 4212.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4212,471,0 chrIX 50644 . T C 4512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=203;Dels=0.00;FS=12.068;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.193;QD=22.23;ReadPosRankSum=2.906;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:3,200:203:99:4512,501,0 chrIX 51124 . A T 3994.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=23.63;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3994,441,0 chrIX 51323 . T C 79.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.372;DP=141;Dels=0.00;FS=8.008;HaplotypeScore=6.6590;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=1.776;QD=0.56;ReadPosRankSum=-5.010;SB=-1.173e+02 GT:AD:DP:GQ:PL 1/1:129,9:141:15:112,15,0 chrIX 51326 . T C 62.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=143;Dels=0.00;FS=2.687;HaplotypeScore=4.2930;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=1.755;QD=0.44;ReadPosRankSum=2.396;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:5,136:143:12:95,12,0 chrIX 51375 . T C 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.104;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=16.6290;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-1.412;QD=20.47;ReadPosRankSum=2.104;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:2,126:130:99:2694,297,0 chrIX 52260 . G A 5646.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=10.4553;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=20.53;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:5646,642,0 chrIX 52278 . G A 5436.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=1.5362;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=20.06;SB=-3.190e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:5436,588,0 chrIX 52293 . T C 4460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=257;Dels=0.00;FS=2.900;HaplotypeScore=10.8837;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-0.714;QD=17.35;ReadPosRankSum=2.430;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:2,254:257:99:4460,522,0 chrIX 53091 . G C 4791.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=5.9222;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.56;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:4791,561,0 chrIX 53103 . A G 4393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=10.6192;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.396;QD=18.38;ReadPosRankSum=1.717;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:1,237:239:99:4393,498,0 chrIX 53238 . T C 4943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=238;Dels=0.00;FS=3.606;HaplotypeScore=13.0214;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.681;QD=20.77;ReadPosRankSum=1.688;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:1,233:238:99:4943,573,0 chrIX 53607 . T C 4923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=14.6212;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.680;QD=22.90;ReadPosRankSum=1.667;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4923,573,0 chrIX 53709 . A G 4365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=203;Dels=0.00;FS=2.791;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.359;QD=21.50;ReadPosRankSum=2.340;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4365,495,0 chrIX 53832 . G A 3812.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=16.0207;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.29;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3812,426,0 chrIX 53966 . T C 7749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.175;DP=333;Dels=0.00;FS=6.960;HaplotypeScore=32.6093;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.832;QD=23.27;ReadPosRankSum=4.513;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:7,325:333:99:7749,873,0 chrIX 54350 . G A 9222.01 filter AC=2;AF=1.00;AN=2;DP=424;Dels=0.00;FS=0.000;HaplotypeScore=26.4475;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.75;SB=-5.187e+03 GT:AD:DP:GQ:PL 1/1:0,421:424:99:9222,1032,0 chrIX 54482 . T C 6770.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=373;Dels=0.00;FS=4.295;HaplotypeScore=20.6087;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.033;QD=18.15;ReadPosRankSum=1.723;SB=-3.479e+03 GT:AD:DP:GQ:PL 1/1:1,371:373:99:6770,771,0 chrIX 54498 . C T 6740.01 filter AC=2;AF=1.00;AN=2;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=18.42;SB=-3.572e+03 GT:AD:DP:GQ:PL 1/1:0,363:366:99:6740,753,0 chrIX 54711 . C T 4967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=24.5872;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.084;QD=17.01;ReadPosRankSum=0.625;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:2,287:292:99:4967,552,0 chrIX 55251 . G A 11201.01 filter AC=2;AF=1.00;AN=2;DP=469;Dels=0.00;FS=0.000;HaplotypeScore=32.8400;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=23.88;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,463:469:99:11201,1222,0 chrIX 55461 . A T 13609.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.532;DP=698;Dels=0.00;FS=8.283;HaplotypeScore=47.5378;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=1.368;QD=19.50;ReadPosRankSum=4.757;SB=-7.415e+03 GT:AD:DP:GQ:PL 1/1:8,690:698:99:13609,1513,0 chrIX 55678 . A C 7980.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=443;Dels=0.00;FS=5.425;HaplotypeScore=29.9443;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=0.907;QD=18.01;ReadPosRankSum=2.948;SB=-4.326e+03 GT:AD:DP:GQ:PL 1/1:3,439:443:99:7980,915,0 chrIX 55702 . A G 6298.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=402;Dels=0.00;FS=5.770;HaplotypeScore=3.6195;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=0.284;QD=15.67;ReadPosRankSum=2.953;SB=-4.415e+03 GT:AD:DP:GQ:PL 1/1:3,399:402:99:6298,714,0 chrIX 55716 . T C 6142.01 filter AC=2;AF=1.00;AN=2;DP=375;Dels=0.00;FS=0.000;HaplotypeScore=16.3923;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=16.38;SB=-3.796e+03 GT:AD:DP:GQ:PL 1/1:0,373:375:99:6142,711,0 chrIX 55837 . T C 6264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=303;Dels=0.00;FS=9.316;HaplotypeScore=17.6046;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-2.215;QD=20.67;ReadPosRankSum=2.385;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:2,301:303:99:6264,702,0 chrIX 56028 . T A 4256.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.4594;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.64;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4256,480,0 chrIX 56256 . G A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3379,378,0 chrIX 57063 . C T 3732.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.21;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3732,408,0 chrIX 57344 . G A 2463 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.52;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2496,282,0 chrIX 57857 . C T 5345.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=20.5290;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.14;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5345,594,0 chrIX 57929 . C T 4233.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.2895;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.85;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4233,480,0 chrIX 58256 . C G 3392.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.17;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3392,393,0 chrIX 58382 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.18;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3182,357,0 chrIX 58508 . A G 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=0.982;QD=19.92;ReadPosRankSum=1.646;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2424,279,0 chrIX 58511 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.68;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2570,282,0 chrIX 58961 . G A 3006 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=23.67;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3039,327,0 chrIX 59054 . C T 2989 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3022,327,0 chrIX 59911 . T C 2042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.505;QD=21.27;ReadPosRankSum=1.624;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2075,243,0 chrIX 60280 . T C 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.566;DP=183;Dels=0.00;FS=5.471;HaplotypeScore=19.9033;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.489;QD=21.19;ReadPosRankSum=2.918;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:3,180:183:99:3878,435,0 chrIX 60438 . T C 4346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=199;Dels=0.00;FS=3.030;HaplotypeScore=12.7461;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.093;QD=21.84;ReadPosRankSum=2.375;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:2,195:199:99:4346,507,0 chrIX 60844 . T C 2977 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.26;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3010,354,0 chrIX 60879 . A C 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.632;QD=21.26;ReadPosRankSum=1.707;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2988,342,0 chrIX 61323 . C T 2302 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8198;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.13;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2335,255,0 chrIX 61692 . T C 2880 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.50;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2913,327,0 chrIX 62057 . A C 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.7086;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.206;QD=21.14;ReadPosRankSum=1.704;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2697,315,0 chrIX 62276 . C T 2929 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6892;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2962,324,0 chrIX 62481 . C T 3441.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3441,378,0 chrIX 62861 . C G 2410 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.60;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2443,288,0 chrIX 62971 . G A 2509 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.40;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2542,285,0 chrIX 63202 . T C 4256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.113;QD=23.01;ReadPosRankSum=1.676;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4256,486,0 chrIX 63655 . A G 2870 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.5592;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.26;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2903,330,0 chrIX 63852 . C T 2612 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.32;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2645,288,0 chrIX 64041 . C T 2293 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.4115;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=18.06;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2326,264,0 chrIX 64048 . T C 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;MQRankSum=-0.102;QD=17.07;ReadPosRankSum=1.703;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2098,237,0 chrIX 64057 . C A 1713 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3481;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=15.72;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1746,201,0 chrIX 64177 . C T 2819 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.37;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2852,321,0 chrIX 64231 . G A 2500 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.55;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2533,282,0 chrIX 64944 . C T 3752.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.05;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3752,417,0 chrIX 64980 . C T 3608.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.74;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3608,396,0 chrIX 65975 . T C 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=3.405;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=-0.828;QD=21.37;ReadPosRankSum=1.619;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2020,228,0 chrIX 65995 . A G 1723 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=18.33;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1756,204,0 chrIX 66001 . T C 1692 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=18.80;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1725,201,0 chrIX 66032 . T C 1374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=89;Dels=0.00;FS=2.514;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;MQRankSum=-0.115;QD=15.44;ReadPosRankSum=2.782;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:3,85:89:99:1407,165,0 chrIX 66049 . T C 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=100;Dels=0.00;FS=8.776;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;MQRankSum=-0.666;QD=15.01;ReadPosRankSum=2.299;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:2,96:100:99:1534,177,0 chrIX 66078 . C T 1918 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=18.09;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1951,213,0 chrIX 66115 . T A 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.502;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=0.155;QD=17.58;ReadPosRankSum=1.670;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2019,231,0 chrIX 66117 . T C 2001 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=17.71;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2034,240,0 chrIX 66155 . A G 2055 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=16.98;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2088,237,0 chrIX 66170 . G A 2143 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.9558;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=17.71;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2176,237,0 chrIX 66194 . G A 2264 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=17.69;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2297,258,0 chrIX 66286 . T G 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=107;Dels=0.00;FS=8.770;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;MQRankSum=-0.550;QD=20.83;ReadPosRankSum=3.145;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:4,103:107:99:2262,234,0 chrIX 66315 . T G 2017 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=19.21;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2050,240,0 chrIX 66328 . T A 2126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.145;DP=114;Dels=0.00;FS=6.456;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.666;QD=18.65;ReadPosRankSum=2.232;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2159,243,0 chrIX 66373 . T C 2822 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.20;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2855,330,0 chrIX 66487 . A T 2424 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=18.50;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2457,273,0 chrIX 66488 . A G 2440 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=18.35;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2473,279,0 chrIX 66647 . G A 2769 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.70;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2802,309,0 chrIX 66675 . C T 2768 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.29;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2801,306,0 chrIX 67173 . T C 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=140;Dels=0.00;FS=3.722;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=1.059;QD=22.84;ReadPosRankSum=1.682;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3230,363,0 chrIX 67321 . T C 2543 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.71;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2576,294,0 chrIX 67392 . T C 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;MQRankSum=-1.075;QD=18.47;ReadPosRankSum=1.702;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2175,252,0 chrIX 67395 . A T 2205 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3126;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=19.01;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2238,246,0 chrIX 67439 . G A 2023 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=17.00;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2056,231,0 chrIX 67444 . T C 1774 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=16.13;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:1807,213,0 chrIX 67458 . T C 1558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=100;Dels=0.00;FS=6.608;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;MQRankSum=-0.185;QD=15.58;ReadPosRankSum=2.376;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1591,180,0 chrIX 67515 . A C 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=3.136;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.676;QD=21.03;ReadPosRankSum=1.666;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2241,249,0 chrIX 67540 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.75;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2831,312,0 chrIX 67663 . A G 2453 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=135;Dels=0.00;FS=5.283;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=1.399;QD=18.17;ReadPosRankSum=1.706;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2486,297,0 chrIX 67667 . C T 2670 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=21.02;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2703,306,0 chrIX 67672 . A G 2517 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=133;Dels=0.00;FS=5.610;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;MQRankSum=-0.172;QD=18.92;ReadPosRankSum=1.679;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2550,288,0 chrIX 67690 . G C 2832 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1691;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=17.92;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2865,330,0 chrIX 67842 . C T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.1987;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.03;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3415,372,0 chrIX 67951 . C T 4285.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.6996;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.67;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4285,474,0 chrIX 68015 . C T 3078 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.14;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3111,339,0 chrIX 68072 . G T 2940 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.15;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2973,333,0 chrIX 68113 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.72;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3271,378,0 chrIX 68186 . C T 2608 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.22;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2641,288,0 chrIX 68194 . A G 2491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=115;Dels=0.00;FS=11.546;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-2.079;QD=21.66;ReadPosRankSum=2.939;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2524,291,0 chrIX 68317 . C A 3495.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.84;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3495,399,0 chrIX 68342 . A T 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=6.459;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-0.843;QD=21.06;ReadPosRankSum=2.337;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3255,360,0 chrIX 68384 . A T 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=3.454;HaplotypeScore=8.8794;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-0.433;QD=21.15;ReadPosRankSum=1.708;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3100,333,0 chrIX 68461 . A G 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.2162;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.521;QD=22.02;ReadPosRankSum=1.713;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4030,462,0 chrIX 68540 . A G 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=156;Dels=0.00;FS=6.628;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.323;QD=19.76;ReadPosRankSum=2.371;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3115,351,0 chrIX 68559 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.37;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3196,354,0 chrIX 68857 . A G 2693 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.44;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2726,306,0 chrIX 68913 . A G 2815 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=23.66;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2848,330,0 chrIX 69138 . T C 3729.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.74;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3729,423,0 chrIX 69624 . C A 2093 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.80;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2126,234,0 chrIX 69651 . A G 1528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=-0.866;QD=17.77;ReadPosRankSum=1.691;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,83:86:99:1561,177,0 chrIX 69658 . T C 1606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=3.832;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.577;QD=18.46;ReadPosRankSum=1.692;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1639,186,0 chrIX 69770 . T G 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.417;QD=23.07;ReadPosRankSum=1.668;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2525,288,0 chrIX 69776 . A G 2521 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=23.13;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2554,288,0 chrIX 69789 . G A 2584 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.09;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2617,303,0 chrIX 69950 . A G 3738.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.7778;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.12;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3738,426,0 chrIX 70241 . T C 3552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.142;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.5309;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.381;QD=22.34;ReadPosRankSum=1.710;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3552,388,0 chrIX 70435 . C T 4436.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.5067;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.43;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4436,483,0 chrIX 70598 . G A 4103.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=18.1601;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.26;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4103,459,0 chrIX 70992 . G A 4349.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.9431;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.42;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4349,474,0 chrIX 71253 . C T 3775.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.82;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3775,414,0 chrIX 71768 . G A 2762 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.6747;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.46;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2795,309,0 chrIX 72459 . G A 2990 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.2710;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=20.07;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3023,342,0 chrIX 72464 . T C 3007 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=20.18;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3040,342,0 chrIX 72533 . C G 3017 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=17.75;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3050,354,0 chrIX 72564 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.94;MQ0=0;QD=16.56;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2583,288,0 chrIX 72570 . G T 2556 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;QD=15.59;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2589,297,0 chrIX 72581 . G A 2441 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.50;MQ0=0;QD=15.16;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2474,273,0 chrIX 72586 . G C 2280 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.38;MQ0=0;QD=14.25;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2313,258,0 chrIX 72621 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=17.34;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2773,303,0 chrIX 72672 . G A 2800 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=20.59;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2833,321,0 chrIX 72684 . T G 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=129;Dels=0.00;FS=3.634;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;MQRankSum=0.232;QD=19.09;ReadPosRankSum=1.514;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2495,279,0 chrIX 72697 . C T 2154 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.3465;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=17.51;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2187,249,0 chrIX 72757 . T A 2366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;MQRankSum=-1.095;QD=17.40;ReadPosRankSum=1.707;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2399,264,0 chrIX 72762 . T C 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;MQRankSum=-1.287;QD=16.41;ReadPosRankSum=1.707;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2330,273,0 chrIX 72784 . T C 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;MQRankSum=0.073;QD=18.77;ReadPosRankSum=1.648;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3130,363,0 chrIX 72950 . T A 3340.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.0011;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=22.72;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3340,366,0 chrIX 72998 . A G 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=198;Dels=0.00;FS=2.988;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-1.581;QD=21.09;ReadPosRankSum=2.412;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4176,474,0 chrIX 73076 . A G 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=171;Dels=0.00;FS=2.993;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.812;QD=22.54;ReadPosRankSum=2.392;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3855,441,0 chrIX 73100 . G A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=23.07;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3263,357,0 chrIX 73117 . T C 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=133;Dels=0.00;FS=6.527;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.416;QD=21.89;ReadPosRankSum=2.394;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2945,330,0 chrIX 73271 . G A 2576 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.21;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2609,294,0 chrIX 74340 . A G 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=4.037;HaplotypeScore=7.8163;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.972;QD=22.42;ReadPosRankSum=1.641;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2634,294,0 chrIX 74472 . A G 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.000;QD=19.96;ReadPosRankSum=1.689;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1630,183,0 chrIX 74541 . G A 2635 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.08;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2668,300,0 chrIX 74610 . C T 2814 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.16;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2847,312,0 chrIX 74646 . A G 2419 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.85;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2452,282,0 chrIX 74736 . A G 2322 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=18.28;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2355,267,0 chrIX 74754 . T C 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.192;QD=17.62;ReadPosRankSum=1.706;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2412,276,0 chrIX 74922 . T C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.443;QD=21.53;ReadPosRankSum=1.705;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,128:132:99:2875,333,0 chrIX 74967 . T A 3038 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.34;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3071,339,0 chrIX 75719 . G A 5523.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=13.4989;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.41;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5523,609,0 chrIX 75847 . T C 2978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=174;Dels=0.00;FS=11.514;HaplotypeScore=13.9210;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.168;QD=17.11;ReadPosRankSum=2.420;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:2,166:174:99:3011,333,0 chrIX 76340 . C T 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.665;QD=24.08;ReadPosRankSum=1.665;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3757,411,0 chrIX 76900 . C T 5054.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=16.7812;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.24;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5054,555,0 chrIX 77020 . C T 5704.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=18.2628;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.23;SB=-2.953e+03 GT:AD:DP:GQ:PL 1/1:0,279:282:99:5704,639,0 chrIX 77331 . G A 3353.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3353,372,0 chrIX 77497 . C A 2921 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.14;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2954,327,0 chrIX 77546 . T C 3647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.7461;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.637;QD=23.38;ReadPosRankSum=1.710;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3647,414,0 chrIX 77594 . T A 3959.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.62;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3959,429,0 chrIX 77663 . C T 3030 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.4784;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.44;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3063,339,0 chrIX 77692 . G T 3382.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.49;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3382,366,0 chrIX 77783 . A G 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.010;QD=22.39;ReadPosRankSum=1.608;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3761,432,0 chrIX 77847 . A G 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.5629;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.071;QD=21.53;ReadPosRankSum=1.709;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3273,366,0 chrIX 77935 . A T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9154;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.10;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3564,393,0 chrIX 78700 . T C 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=115;Dels=0.00;FS=5.708;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.535;QD=21.43;ReadPosRankSum=2.816;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2498,294,0 chrIX 78739 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.3541;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.01;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3115,354,0 chrIX 79254 . C T 2343 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2376,261,0 chrIX 79502 . A G 1923 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.61;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1956,228,0 chrIX 79550 . T C 1742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=83;Dels=0.00;FS=9.127;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-1.338;QD=20.99;ReadPosRankSum=2.330;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:2,80:83:99:1775,198,0 chrIX 79625 . A G 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.819;QD=20.33;ReadPosRankSum=1.669;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2290,261,0 chrIX 79627 . C T 2319 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.08;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2352,258,0 chrIX 79786 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.85;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2546,291,0 chrIX 79822 . G A 2647 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.22;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2680,294,0 chrIX 79855 . T C 2250 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.23;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2283,264,0 chrIX 79996 . A G 2196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.485;QD=22.18;ReadPosRankSum=2.400;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2229,246,0 chrIX 80414 . A G 1406 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.09;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1439,162,0 chrIX 80419 . A G 1321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=5.229;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.396;QD=18.87;ReadPosRankSum=1.633;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1354,159,0 chrIX 80696 . A G 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=193;Dels=0.00;FS=4.508;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.577;QD=20.09;ReadPosRankSum=1.696;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:3878,459,0 chrIX 81014 . G A 3887.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.36;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3887,426,0 chrIX 81677 . G C 3560.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.23;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3560,417,0 chrIX 81950 . G C 2680 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.2812;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.46;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,124:131:99:2713,318,0 chrIX 82899 . G A 3878.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.9525;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.99;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3878,447,0 chrIX 82976 . G A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6140;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.88;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3683,408,0 chrIX 83005 . C G 2430 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.29;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2463,285,0 chrIX 83021 . G A 2681 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.78;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2714,294,0 chrIX 83067 . T C 2806 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.49;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2839,318,0 chrIX 83104 . A C 3304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.289;QD=21.04;ReadPosRankSum=1.688;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3304,375,0 chrIX 83114 . T C 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=4.415;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.638;QD=19.49;ReadPosRankSum=1.687;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3015,342,0 chrIX 83152 . G A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.09;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3290,360,0 chrIX 83376 . T C 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.489;QD=22.61;ReadPosRankSum=1.712;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3867,441,0 chrIX 83487 . G A 4822.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.1680;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.23;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4822,534,0 chrIX 83517 . C G 4261.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.31;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4261,501,0 chrIX 83571 . T C 3960.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.00;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3960,462,0 chrIX 83612 . G A 4527.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.70;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4527,483,0 chrIX 83707 . A G 4179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.304;DP=203;Dels=0.00;FS=13.645;HaplotypeScore=18.1388;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.086;QD=20.59;ReadPosRankSum=4.409;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:7,195:203:99:4179,465,0 chrIX 83797 . T C 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.4352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.660;QD=22.63;ReadPosRankSum=1.670;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3825,432,0 chrIX 84138 . T C 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=181;Dels=0.00;FS=2.912;HaplotypeScore=13.6338;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.628;QD=22.02;ReadPosRankSum=2.422;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:2,176:181:99:3985,459,0 chrIX 84735 . C T 5981.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.06;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:0,280:284:99:5981,681,0 chrIX 84970 . T C 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.6597;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.486;QD=21.03;ReadPosRankSum=1.713;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3848,438,0 chrIX 85047 . C T 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-1.528;QD=22.62;ReadPosRankSum=-1.019;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3132,354,0 chrIX 85141 . C T 3374.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.4336;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=21.77;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3374,375,0 chrIX 85309 . C T 3946.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.7620;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:3946,426,0 chrIX 85680 . C T 4765.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.80;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4765,519,0 chrIX 85758 . G A 5178.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=17.4654;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.85;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5178,579,0 chrIX 85803 . T C 4944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=225;Dels=0.00;FS=3.472;HaplotypeScore=16.8027;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.621;QD=21.97;ReadPosRankSum=1.684;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:1,217:225:99:4944,555,0 chrIX 85860 . T C 5494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=21.5529;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=0.161;QD=22.24;ReadPosRankSum=1.564;SB=-2.917e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:5494,624,0 chrIX 85938 . A G 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=202;Dels=0.00;FS=3.032;HaplotypeScore=20.6392;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.524;QD=22.67;ReadPosRankSum=2.400;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:2,197:202:99:4580,522,0 chrIX 86100 . G A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=19.35;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3405,375,0 chrIX 86101 . G T 3473.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=19.96;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3473,378,0 chrIX 86265 . G C 2963 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.87;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:2996,357,0 chrIX 86463 . C T 3573.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.3593;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.64;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3573,396,0 chrIX 86586 . T G 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=156;Dels=0.00;FS=3.038;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.540;QD=21.26;ReadPosRankSum=2.386;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3316,390,0 chrIX 86602 . A G 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=169;Dels=0.00;FS=3.036;HaplotypeScore=11.3877;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.421;QD=21.86;ReadPosRankSum=1.711;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3694,411,0 chrIX 86751 . C T 4707.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.19;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4707,516,0 chrIX 86796 . T G 3747.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.9076;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.04;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3747,449,0 chrIX 86904 . C T 4255.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.36;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4255,459,0 chrIX 86925 . A G 4373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.370;QD=21.13;ReadPosRankSum=1.665;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4373,504,0 chrIX 86976 . C T 4344.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.19;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4344,489,0 chrIX 87135 . T C 3587.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.0572;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.48;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3587,405,0 chrIX 87159 . C T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.0143;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.20;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3354,381,0 chrIX 87283 . C T 2772 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.49;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2805,303,0 chrIX 87342 . A G 3902.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.6275;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.09;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3902,435,0 chrIX 87451 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3393,378,0 chrIX 88241 . T C 4184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.7210;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.007;QD=24.05;ReadPosRankSum=2.421;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:4184,465,0 chrIX 88444 . G A 3747.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.8835;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=20.82;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3747,414,0 chrIX 88448 . T C 3474.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.6722;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.20;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,168:172:99:3474,390,0 chrIX 88744 . T C 83.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.762;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=109.7716;MLEAC=1;MLEAF=0.500;MQ=51.73;MQ0=0;MQRankSum=1.197;QD=0.62;ReadPosRankSum=-4.478;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:124,8:133:86:113,0,86 chrIX 88745 . T C 57.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.300;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=109.7716;MLEAC=1;MLEAF=0.500;MQ=51.73;MQ0=0;MQRankSum=0.619;QD=0.43;ReadPosRankSum=4.808;SB=-1.460e+03 GT:AD:DP:GQ:PL 0/1:10,123:133:87:87,0,112 chrIX 88763 . G A 2322 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=17.33;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2355,261,0 chrIX 88786 . C T 2154 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=5.8508;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=15.84;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2187,234,0 chrIX 89309 . T C 3914.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.39;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3914,450,0 chrIX 89926 . G T 2267 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.02;FS=0.000;HaplotypeScore=29.4139;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.23;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2300,252,0 chrIX 89966 . G A 2461 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.59;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2494,273,0 chrIX 89987 . G A 2539 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.64;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2572,288,0 chrIX 90049 . A G 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.7672;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-0.303;QD=20.96;ReadPosRankSum=1.708;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3051,336,0 chrIX 90180 . G A 2344 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=20.74;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2377,270,0 chrIX 90230 . C T 2587 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.90;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2620,288,0 chrIX 90421 . A G 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=3.603;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.593;QD=22.68;ReadPosRankSum=1.662;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3380,375,0 chrIX 90617 . A G 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.643;DP=140;Dels=0.00;FS=2.591;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.482;QD=21.07;ReadPosRankSum=2.949;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:3,135:140:99:2983,339,0 chrIX 91079 . G A 3136 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3169,345,0 chrIX 91130 . C T 3469.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3469,387,0 chrIX 91277 . C T 3098 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.97;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3131,336,0 chrIX 91358 . T C 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.632;QD=21.48;ReadPosRankSum=1.662;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3233,363,0 chrIX 91610 . A T 5625.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5625,624,0 chrIX 91709 . A T 5753.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=9.4584;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.48;SB=-2.823e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5753,648,0 chrIX 91834 . T A 5717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=268;Dels=0.00;FS=7.072;HaplotypeScore=14.8691;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;MQRankSum=-0.517;QD=21.33;ReadPosRankSum=2.431;SB=-3.113e+03 GT:AD:DP:GQ:PL 1/1:2,266:268:99:5717,630,0 chrIX 91886 . G A 3973.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.37;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3973,450,0 chrIX 91967 . T C 4319.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.2488;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.07;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4319,486,0 chrIX 91970 . A G 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.6714;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.837;QD=19.83;ReadPosRankSum=1.682;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4145,468,0 chrIX 92207 . C T 3453.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=23.49;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3453,372,0 chrIX 92414 . A G 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=161;Dels=0.01;FS=2.940;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-1.467;QD=19.29;ReadPosRankSum=2.404;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3139,354,0 chrIX 92420 . T C 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.114;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=1.809;QD=19.17;ReadPosRankSum=2.144;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3120,354,0 chrIX 92829 . C T 3033 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.3415;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=22.14;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3066,354,0 chrIX 92944 . A G 1311 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;MQRankSum=-0.987;QD=17.03;ReadPosRankSum=2.777;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:3,74:77:99:1344,153,0 chrIX 92947 . G A 1369 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=18.50;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1402,156,0 chrIX 92948 . A T 1317 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;DP=72;Dels=0.00;FS=3.133;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;MQRankSum=-1.636;QD=18.29;ReadPosRankSum=1.684;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1350,153,0 chrIX 92966 . C T 975 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.15;MQ0=0;QD=14.34;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1008,114,0 chrIX 92997 . G A 713 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.84;MQ0=0;QD=12.73;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:84:746,84,0 chrIX 92998 . A C 725 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.18;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:84:758,84,0 chrIX 92999 . A C 682 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.62;MQ0=0;QD=11.96;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:84:715,84,0 chrIX 93013 . G T 1086 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;QD=12.93;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1119,123,0 chrIX 93053 . C A 1958 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=16.45;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1991,219,0 chrIX 93058 . C T 1997 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=16.50;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2030,216,0 chrIX 93215 . A G 3775.01 SnpCluster AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=18.88;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3775,429,0 chrIX 93219 . A G 3465.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=198;Dels=0.00;FS=8.751;HaplotypeScore=3.4764;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=0.489;QD=17.50;ReadPosRankSum=1.608;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:1,194:198:99:3465,414,0 chrIX 93224 . T C 3410.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.169;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.4841;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=-1.234;QD=16.16;ReadPosRankSum=3.253;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:4,206:211:99:3410,393,0 chrIX 93546 . G A 5231.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=17.6977;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.35;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:0,241:245:99:5231,597,0 chrIX 93577 . T C 5605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=9.5351;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.550;QD=21.98;ReadPosRankSum=1.718;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:1,251:255:99:5605,651,0 chrIX 93646 . G A 5546.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.50;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5546,639,0 chrIX 93660 . T A 5007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=250;Dels=0.00;FS=2.530;HaplotypeScore=10.5166;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.923;QD=20.03;ReadPosRankSum=2.737;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:3,246:250:99:5007,555,0 chrIX 93663 . C T 4942.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.01;FS=0.000;HaplotypeScore=11.3871;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.38;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:4942,552,0 chrIX 93723 . C T 4233.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=16.4664;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.51;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4233,474,0 chrIX 93786 . A G 6170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=291;Dels=0.00;FS=2.868;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.261;QD=21.20;ReadPosRankSum=2.364;SB=-2.984e+03 GT:AD:DP:GQ:PL 1/1:2,285:291:99:6170,690,0 chrIX 93804 . C T 6040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=303;Dels=0.00;FS=3.724;HaplotypeScore=6.7273;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-0.869;QD=19.93;ReadPosRankSum=0.554;SB=-3.147e+03 GT:AD:DP:GQ:PL 1/1:1,301:303:99:6040,684,0 chrIX 93903 . G A 6878.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=17.1933;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=23.32;SB=-3.638e+03 GT:AD:DP:GQ:PL 1/1:0,295:295:99:6878,768,0 chrIX 94062 . T C 5649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=247;Dels=0.00;FS=6.891;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.019;QD=22.87;ReadPosRankSum=2.430;SB=-2.839e+03 GT:AD:DP:GQ:PL 1/1:2,245:247:99:5649,636,0 chrIX 94089 . G C 5502.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=16.3915;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.08;SB=-2.923e+03 GT:AD:DP:GQ:PL 1/1:0,271:274:99:5502,647,0 chrIX 94263 . C T 5663.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.95;SB=-3.059e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5663,633,0 chrIX 94443 . A G 6722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=294;Dels=0.00;FS=7.115;HaplotypeScore=23.7474;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.105;QD=22.86;ReadPosRankSum=2.382;SB=-3.235e+03 GT:AD:DP:GQ:PL 1/1:2,290:294:99:6722,750,0 chrIX 94563 . T C 6147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.068;DP=271;Dels=0.00;FS=10.745;HaplotypeScore=16.7005;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=0.146;QD=22.68;ReadPosRankSum=4.158;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:6,263:271:99:6147,705,0 chrIX 94593 . A G 5981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.969;DP=295;Dels=0.00;FS=10.044;HaplotypeScore=2.6732;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=0.520;QD=20.27;ReadPosRankSum=2.908;SB=-3.485e+03 GT:AD:DP:GQ:PL 1/1:3,292:295:99:5981,681,0 chrIX 94596 . T C 5754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-1.360;QD=19.31;ReadPosRankSum=1.686;SB=-3.558e+03 GT:AD:DP:GQ:PL 1/1:1,297:298:99:5754,666,0 chrIX 94731 . A G 4923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=226;Dels=0.00;FS=2.555;HaplotypeScore=8.4528;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.329;QD=21.78;ReadPosRankSum=2.925;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:3,223:226:99:4923,564,0 chrIX 94758 . T C 5123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=245;Dels=0.00;FS=4.753;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-0.297;QD=20.91;ReadPosRankSum=1.689;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:1,238:245:99:5123,600,0 chrIX 94805 . A T 4638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=17.4069;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.039;QD=22.41;ReadPosRankSum=2.868;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:4638,507,0 chrIX 94886 . T C 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=139;Dels=0.00;FS=3.027;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=1.113;QD=20.91;ReadPosRankSum=2.378;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2939,339,0 chrIX 94907 . A G 2784 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=19.33;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2817,321,0 chrIX 94908 . T A 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=0.657;QD=19.53;ReadPosRankSum=1.684;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2865,321,0 chrIX 94919 . A C 2943 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=19.49;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2976,342,0 chrIX 95013 . G A 2113 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=23.22;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2146,234,0 chrIX 95057 . A G 1801 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=18.96;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1834,216,0 chrIX 95059 . T A 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.695;DP=97;Dels=0.00;FS=12.271;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=1.525;QD=19.67;ReadPosRankSum=3.565;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:5,92:97:99:1941,216,0 chrIX 95216 . A C 3024 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.2213;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.62;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3057,348,0 chrIX 95293 . A G 2597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=145;Dels=0.00;FS=4.071;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;MQRankSum=-0.157;QD=17.91;ReadPosRankSum=1.708;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:2630,300,0 chrIX 95296 . G A 2346 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=16.41;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2379,276,0 chrIX 95341 . C G 2588 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=16.38;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:2621,309,0 chrIX 95346 . G C 2568 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.2696;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=16.05;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:2601,300,0 chrIX 95527 . A G 4616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=240;Dels=0.00;FS=4.128;HaplotypeScore=11.1357;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=-0.422;QD=19.23;ReadPosRankSum=1.674;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:1,237:240:99:4616,540,0 chrIX 95541 . T C 4628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=249;Dels=0.00;FS=5.487;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-0.850;QD=18.59;ReadPosRankSum=2.956;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:3,245:249:99:4628,528,0 chrIX 95590 . C T 5104.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=18.29;SB=-3.096e+03 GT:AD:DP:GQ:PL 1/1:0,278:279:99:5104,561,0 chrIX 95596 . T C 4905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=276;Dels=0.00;FS=2.926;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=-1.623;QD=17.77;ReadPosRankSum=2.432;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:2,274:276:99:4905,561,0 chrIX 95674 . T C 5599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=271;Dels=0.00;FS=3.844;HaplotypeScore=28.6699;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.140;QD=20.66;ReadPosRankSum=1.706;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:1,268:271:99:5599,639,0 chrIX 96059 . T A 4582.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.2328;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.51;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4582,501,0 chrIX 96483 . C T 6157.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=15.2727;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.32;SB=-3.210e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:6157,669,0 chrIX 96860 . G A 3939.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.62;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3939,438,0 chrIX 96868 . C T 3713.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.65;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3713,420,0 chrIX 96985 . T C 2912 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.7963;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.65;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2945,321,0 chrIX 97985 . T C 3086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=146;Dels=0.00;FS=3.620;HaplotypeScore=11.9200;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.657;QD=21.14;ReadPosRankSum=1.708;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3119,360,0 chrIX 98050 . G A 3801.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3801,417,0 chrIX 98144 . G A 3473.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.4890;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.70;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3473,390,0 chrIX 98294 . C A 2297 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2330,258,0 chrIX 98932 . A G 2542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-1.350;QD=21.54;ReadPosRankSum=1.644;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2575,297,0 chrIX 98941 . G A 2419 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=22.19;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2452,276,0 chrIX 99644 . G A 2743 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.32;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2776,303,0 chrIX 99647 . T C 2715 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;MQRankSum=-1.328;QD=19.53;ReadPosRankSum=1.682;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2748,306,0 chrIX 99653 . T C 2674 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=19.52;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2707,303,0 chrIX 99731 . C T 1683 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=34.30;MQ0=0;QD=15.73;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,92:107:99:1716,192,0 chrIX 99734 . A G 1826 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=33.66;MQ0=0;QD=17.56;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1859,219,0 chrIX 99750 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5678;MLEAC=2;MLEAF=1.00;MQ=29.52;MQ0=0;QD=15.31;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1426,162,0 chrIX 99772 . C T 1342 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=32.85;MQ0=0;QD=11.57;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1375,150,0 chrIX 99794 . T C 1384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=133;Dels=0.00;FS=3.530;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;MQRankSum=-1.341;QD=10.41;ReadPosRankSum=1.706;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:1417,162,0 chrIX 99807 . A G 1666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=142;Dels=0.00;FS=2.971;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;MQRankSum=1.307;QD=11.73;ReadPosRankSum=2.415;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:1699,195,0 chrIX 99846 . T A 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=3.391;HaplotypeScore=4.8670;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=-0.119;QD=18.33;ReadPosRankSum=1.706;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2452,273,0 chrIX 99972 . T C 3960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=175;Dels=0.00;FS=2.583;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=0.944;QD=22.63;ReadPosRankSum=2.421;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:2,171:175:99:3960,447,0 chrIX 100355 . A G 2796 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.19;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2829,315,0 chrIX 100415 . T C 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=122;Dels=0.00;FS=11.671;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.175;QD=19.93;ReadPosRankSum=2.875;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:3,118:122:99:2465,285,0 chrIX 100450 . T C 2722 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.43;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2755,312,0 chrIX 100595 . A G 1592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7670;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.981;QD=19.18;ReadPosRankSum=1.690;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1625,189,0 chrIX 100673 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.68;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1938,213,0 chrIX 101006 . T C 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=145;Dels=0.00;FS=5.347;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=1.986;QD=20.86;ReadPosRankSum=2.951;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:3,141:145:99:3057,345,0 chrIX 101012 . C T 3045 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.9226;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=20.44;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3078,339,0 chrIX 101027 . G A 2723 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=19.73;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2756,300,0 chrIX 101030 . G A 2553 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=18.77;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2586,294,0 chrIX 101207 . A G 3518.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.45;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3518,399,0 chrIX 101270 . A T 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=143;Dels=0.00;FS=3.680;HaplotypeScore=17.7510;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=0.718;QD=21.64;ReadPosRankSum=1.707;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3127,333,0 chrIX 101315 . C A 3108 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.1676;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.30;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3141,345,0 chrIX 101321 . T C 2790 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.4630;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=18.36;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2823,327,0 chrIX 101559 . T C 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=210;Dels=0.00;FS=3.052;HaplotypeScore=14.6994;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.082;QD=16.84;ReadPosRankSum=1.699;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:3537,417,0 chrIX 102098 . A G 5027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=11.4594;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.624;QD=22.34;ReadPosRankSum=1.717;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:5027,558,0 chrIX 102495 . A C 2781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=143;Dels=0.00;FS=2.905;HaplotypeScore=7.7982;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;MQRankSum=0.950;QD=19.45;ReadPosRankSum=2.415;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:2814,315,0 chrIX 102597 . C T 1993 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.43;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2026,222,0 chrIX 103132 . A G 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.5724;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=2.386;QD=22.63;ReadPosRankSum=2.402;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3530,372,0 chrIX 103838 . A T 2868 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2901,318,0 chrIX 103927 . T C 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=173;Dels=0.00;FS=10.319;HaplotypeScore=14.3266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.771;QD=22.50;ReadPosRankSum=2.900;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:3,168:173:99:3893,444,0 chrIX 104128 . G A 2563 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2596,285,0 chrIX 104568 . G A 2066 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2099,234,0 chrIX 104733 . C T 2716 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.9510;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.45;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2749,303,0 chrIX 104826 . T G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.431;QD=23.43;ReadPosRankSum=1.657;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3267,375,0 chrIX 105090 . T C 4187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.336;QD=23.93;ReadPosRankSum=1.692;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4187,471,0 chrIX 105232 . C T 2815 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.49;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2848,315,0 chrIX 105326 . A G 1727 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.767;QD=21.06;ReadPosRankSum=2.390;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1760,198,0 chrIX 105352 . T C 999 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.076;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.802;QD=18.16;ReadPosRankSum=0.160;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,52:55:99:1032,120,0 chrIX 105476 . T C 1300 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=0.880;QD=21.31;ReadPosRankSum=1.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1333,150,0 chrIX 105545 . G A 808 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=26.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:90:841,90,0 chrIX 105709 . C T 1132 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=20.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1165,132,0 chrIX 105713 . G A 1155 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=21.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1188,132,0 chrIX 105717 . C T 1014 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=20.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1047,120,0 chrIX 105923 . A T 915 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:99:948,102,0 chrIX 105953 . G A 699 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=19.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:78:732,78,0 chrIX 105959 . A G 579 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=13.79;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,41:42:72:612,72,0 chrIX 105961 . G A 471 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;MQRankSum=-1.088;QD=10.95;ReadPosRankSum=1.410;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:1,42:43:60:504,60,0 chrIX 106131 . G T 2776 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.4194;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.75;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2809,303,0 chrIX 106490 . C G 7669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.505;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=17.6039;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.515;QD=22.69;ReadPosRankSum=1.031;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,335:338:99:7669,854,0 chrIX 106806 . A G 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=193;Dels=0.00;FS=2.650;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.720;QD=18.68;ReadPosRankSum=2.424;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:3606,408,0 chrIX 106841 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.5013;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4010,435,0 chrIX 107538 . G A 4950.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=12.7634;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:4950,558,0 chrIX 107616 . G A 4795.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.3331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-2.834e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4795,534,0 chrIX 107705 . T C 4670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.1331;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.405;QD=22.89;ReadPosRankSum=1.715;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:1,200:204:99:4670,522,0 chrIX 108315 . A G 3669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=163;Dels=0.00;FS=4.785;HaplotypeScore=6.6683;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.880;QD=22.51;ReadPosRankSum=2.844;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:4,158:163:99:3669,402,0 chrIX 108375 . C T 3821.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.5792;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.30;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3821,429,0 chrIX 109578 . A G 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=134;Dels=0.00;FS=3.109;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.237;QD=21.93;ReadPosRankSum=1.654;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2972,339,0 chrIX 110073 . A G 3343.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3343,378,0 chrIX 110376 . T C 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=6.974;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.922;QD=21.77;ReadPosRankSum=2.379;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3081,348,0 chrIX 110559 . G A 3035 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.9269;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.79;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3068,348,0 chrIX 111173 . G A 2867 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.89;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2900,321,0 chrIX 111519 . A G 4206.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.37;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4206,483,0 chrIX 111569 . G A 4483.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.1857;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.35;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4483,486,0 chrIX 111631 . C T 3172 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.03;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3205,354,0 chrIX 111894 . A G 2452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=113;Dels=0.00;FS=3.207;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.548;QD=21.70;ReadPosRankSum=1.701;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2485,279,0 chrIX 112032 . A G 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=3.375;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=0.559;QD=20.59;ReadPosRankSum=1.704;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2586,294,0 chrIX 112038 . A G 2467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=3.417;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=0.549;QD=19.74;ReadPosRankSum=1.704;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2500,279,0 chrIX 112043 . T A 2576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=125;Dels=0.00;FS=2.954;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=1.557;QD=20.61;ReadPosRankSum=2.410;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2609,282,0 chrIX 112143 . A G 3955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=5.220;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=0.631;QD=22.73;ReadPosRankSum=1.712;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3955,468,0 chrIX 112368 . A G 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=177;Dels=0.00;FS=2.583;HaplotypeScore=8.3273;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.585;QD=20.15;ReadPosRankSum=2.960;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:3567,408,0 chrIX 112374 . A G 3283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=165;Dels=0.00;FS=2.574;HaplotypeScore=3.4091;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=-1.276;QD=19.90;ReadPosRankSum=2.933;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3283,378,0 chrIX 112854 . T A 4456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.199;QD=21.42;ReadPosRankSum=1.665;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4456,513,0 chrIX 113159 . C T 4096.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=17.3051;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.33;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4096,447,0 chrIX 113517 . G A 3790.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.29;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3790,411,0 chrIX 113518 . G A 3798.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.46;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3798,423,0 chrIX 113561 . A T 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.5547;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-0.343;QD=20.21;ReadPosRankSum=1.714;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3839,426,0 chrIX 113679 . G A 4250.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.0536;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.48;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4250,471,0 chrIX 113799 . C A 3311.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.17;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3311,360,0 chrIX 113838 . C T 3414.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.0144;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.31;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3414,387,0 chrIX 113871 . G T 3868.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.9589;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.10;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3868,441,0 chrIX 114027 . A G 3899.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.9881;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.28;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3899,447,0 chrIX 114251 . A G 3035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.5125;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.433;QD=21.68;ReadPosRankSum=1.682;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3068,348,0 chrIX 114308 . T C 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.912;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.595;QD=20.84;ReadPosRankSum=1.651;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2700,300,0 chrIX 114408 . T C 2807 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.6291;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2840,330,0 chrIX 114549 . A G 3062 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.5570;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.72;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3095,345,0 chrIX 114791 . A G 2806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=133;Dels=0.00;FS=6.059;HaplotypeScore=5.3898;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.750;QD=21.10;ReadPosRankSum=2.947;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2839,315,0 chrIX 114808 . G A 3039 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.86;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3072,345,0 chrIX 115136 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.5848;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.32;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3498,393,0 chrIX 115317 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.99;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2386,261,0 chrIX 115335 . T A 2732 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.39;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2765,309,0 chrIX 115756 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=24.86;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2817,309,0 chrIX 115821 . T C 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.575;QD=22.62;ReadPosRankSum=1.653;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2024,228,0 chrIX 115941 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.94;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3153,345,0 chrIX 115950 . G A 2676 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.07;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2709,306,0 chrIX 116245 . G T 2558 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.2874;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.05;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2591,282,0 chrIX 116290 . C T 2959 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.2496;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.30;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2992,333,0 chrIX 116329 . A G 2509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=3.358;HaplotypeScore=4.9410;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.495;QD=21.44;ReadPosRankSum=1.673;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2542,300,0 chrIX 116385 . C T 2629 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.06;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2662,300,0 chrIX 116618 . C T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3633,405,0 chrIX 116694 . C A 3973.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.10;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3973,426,0 chrIX 116742 . A G 4349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.184;DP=194;Dels=0.00;FS=3.010;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.411;QD=22.42;ReadPosRankSum=2.399;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4349,492,0 chrIX 117012 . T A 3020 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.37;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3053,336,0 chrIX 117140 . A G 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=128;Dels=0.00;FS=3.513;HaplotypeScore=13.0142;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.325;QD=22.32;ReadPosRankSum=1.651;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2890,321,0 chrIX 117336 . A T 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.2363;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-1.098;QD=20.61;ReadPosRankSum=1.586;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2960,324,0 chrIX 117411 . T C 2623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.817;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.1676;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=0.255;QD=18.60;ReadPosRankSum=0.448;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:2656,306,0 chrIX 117413 . T G 2469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.671;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.4921;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=0.758;QD=17.39;ReadPosRankSum=0.375;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:2502,262,0 chrIX 117717 . G A 2995 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.2320;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.39;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3028,333,0 chrIX 117809 . T G 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.563;QD=23.25;ReadPosRankSum=1.635;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3325,366,0 chrIX 118307 . A G 3717.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.80;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3717,420,0 chrIX 118413 . C A 4311.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.2904;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4311,471,0 chrIX 118750 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3758,417,0 chrIX 118855 . T C 3852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.710;DP=182;Dels=0.00;FS=16.812;HaplotypeScore=10.2327;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.508;QD=21.16;ReadPosRankSum=3.762;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:5,177:182:99:3852,453,0 chrIX 118925 . C T 4778.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.2999;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.38;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4778,519,0 chrIX 119092 . G A 4349.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.4357;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.64;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4349,468,0 chrIX 119272 . A G 4910.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4910,549,0 chrIX 119687 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.53;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2646,291,0 chrIX 120214 . T A 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.626;QD=23.70;ReadPosRankSum=1.616;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2853,318,0 chrIX 120407 . T G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=126;Dels=0.00;FS=6.269;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.600;QD=21.83;ReadPosRankSum=2.410;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2783,321,0 chrIX 120499 . A G 3581.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.25;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3581,408,0 chrIX 120850 . G A 3661.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3661,399,0 chrIX 120905 . G T 3400.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.0764;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.29;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3400,381,0 chrIX 120937 . C T 3949.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.0514;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.23;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3949,438,0 chrIX 121267 . A G 4563.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.8387;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.40;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4563,513,0 chrIX 121348 . G C 3811.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.3272;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.03;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3811,435,0 chrIX 121460 . A G 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.965;DP=198;Dels=0.00;FS=5.623;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.914;QD=22.02;ReadPosRankSum=2.904;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:4359,504,0 chrIX 121483 . G A 4231.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.48;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4231,462,0 chrIX 121645 . T C 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=159;Dels=0.00;FS=6.927;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.853;QD=20.14;ReadPosRankSum=2.356;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3236,369,0 chrIX 121652 . G A 2977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=0.515;QD=19.98;ReadPosRankSum=-1.451;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3010,339,0 chrIX 122282 . G T 2498 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.53;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2531,282,0 chrIX 122284 . C G 2413 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.45;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2446,276,0 chrIX 122583 . G A 3171 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.49;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3204,351,0 chrIX 122616 . A C 3188 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.84;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3221,360,0 chrIX 122620 . A T 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.133;QD=18.69;ReadPosRankSum=1.710;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2967,336,0 chrIX 122940 . A T 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=168;Dels=0.00;FS=3.063;HaplotypeScore=15.0227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.669;QD=22.42;ReadPosRankSum=1.711;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3766,420,0 chrIX 123180 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3440,381,0 chrIX 123473 . T C 3055 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3088,354,0 chrIX 123720 . C T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.79;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3346,366,0 chrIX 124830 . A G 4514.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.60;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4514,513,0 chrIX 125289 . T G 4492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=205;Dels=0.00;FS=3.075;HaplotypeScore=14.9828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.828;QD=21.91;ReadPosRankSum=1.698;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:4492,531,0 chrIX 125455 . C G 4053.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.7943;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.39;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4053,453,0 chrIX 126032 . T C 2592 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=19.20;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2625,297,0 chrIX 126041 . C T 2650 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=19.34;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2683,291,0 chrIX 126375 . A G 4507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=3.694;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.454;QD=22.42;ReadPosRankSum=1.715;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:4507,522,0 chrIX 126566 . T C 6365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.459;DP=268;Dels=0.00;FS=4.163;HaplotypeScore=14.0016;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.146;QD=23.75;ReadPosRankSum=0.169;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:1,266:268:99:6365,701,0 chrIX 127400 . A C 3174 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.24;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3207,357,0 chrIX 127636 . T C 2743 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=19.88;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2776,312,0 chrIX 127637 . T C 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.7563;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=-0.509;QD=19.22;ReadPosRankSum=1.681;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2666,309,0 chrIX 127749 . C T 3601.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.34;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3601,405,0 chrIX 127774 . G A 3783.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.1570;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.34;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3783,426,0 chrIX 127998 . T C 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=152;Dels=0.00;FS=9.257;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.761;QD=23.36;ReadPosRankSum=2.400;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:3551,408,0 chrIX 128198 . C T 7013.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=11.7481;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.52;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:7013,760,0 chrIX 128641 . C T 4777.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.59;SB=-3.182e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:4777,528,0 chrIX 128715 . T A 194.01 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.93;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:27:227,27,0 chrIX 129293 . C A 6398.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=19.6770;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.44;SB=-3.442e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:6398,705,0 chrIX 129806 . T C 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=9.290;HaplotypeScore=5.9222;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.660;QD=22.21;ReadPosRankSum=2.341;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3054,345,0 chrIX 129937 . T A 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=142;Dels=0.00;FS=2.992;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.811;QD=22.37;ReadPosRankSum=2.362;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3210,360,0 chrIX 130004 . T A 2625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.506;QD=23.23;ReadPosRankSum=1.701;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2658,288,0 chrIX 130019 . C T 2128 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=22.64;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2161,240,0 chrIX 130049 . G T 1916 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=18.60;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1949,216,0 chrIX 130071 . A C 1847 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.04;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1880,222,0 chrIX 130215 . A G 1771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.447;QD=20.84;ReadPosRankSum=1.691;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1804,204,0 chrIX 130270 . T C 2482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=115;Dels=0.00;FS=13.069;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.427;QD=21.58;ReadPosRankSum=3.381;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:4,111:115:99:2515,279,0 chrIX 130537 . C T 4215.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.9325;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.42;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4215,468,0 chrIX 131322 . C T 3867.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.60;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3867,438,0 chrIX 131490 . T C 2665 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=14.89;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:2698,318,0 chrIX 131557 . T C 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=155;Dels=0.00;FS=2.815;HaplotypeScore=16.8561;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.506;QD=19.70;ReadPosRankSum=2.401;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:2,151:155:99:3087,354,0 chrIX 131617 . G A 3171 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.57;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3204,354,0 chrIX 131883 . C A 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.6916;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.336;QD=21.24;ReadPosRankSum=1.287;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3070,324,0 chrIX 131983 . A G 2413 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.78;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2446,273,0 chrIX 132018 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.1033;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.59;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3030,345,0 chrIX 132156 . G A 2948 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2981,327,0 chrIX 132298 . G T 3961.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3961,429,0 chrIX 132429 . T G 4532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.041;QD=21.48;ReadPosRankSum=1.716;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4532,528,0 chrIX 132543 . T C 4805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.9638;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.189;QD=21.64;ReadPosRankSum=1.622;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:1,219:222:99:4805,561,0 chrIX 132615 . G A 5178.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.85;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5178,591,0 chrIX 132805 . G A 3151 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.07;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3184,363,0 chrIX 133131 . G A 3069 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3102,351,0 chrIX 133353 . C T 3996.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.9526;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.70;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3996,435,0 chrIX 133465 . A G 3571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.658;DP=168;Dels=0.00;FS=19.574;HaplotypeScore=9.2771;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=2.390;QD=21.26;ReadPosRankSum=3.798;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:5,162:168:99:3571,425,0 chrIX 133668 . G A 3383.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=21.97;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3383,381,0 chrIX 133685 . T C 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.285;DP=153;Dels=0.00;FS=17.533;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=-0.828;QD=18.93;ReadPosRankSum=3.273;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:4,147:153:99:2930,330,0 chrIX 133698 . A G 3036 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.11;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3069,351,0 chrIX 133851 . G A 2157 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=21.36;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2190,240,0 chrIX 133869 . T C 1980 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=19.41;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2013,228,0 chrIX 133870 . T C 1930 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;MQRankSum=0.100;QD=18.56;ReadPosRankSum=1.699;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1963,228,0 chrIX 133879 . A T 2357 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9109;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=19.48;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2390,273,0 chrIX 134472 . G A 3851.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=16.9075;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.22;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3851,426,0 chrIX 134773 . G A 4337.01 SnpCluster AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=21.58;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4337,474,0 chrIX 134776 . G A 3847.01 SnpCluster AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=19.73;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3847,444,0 chrIX 134779 . T C 3974.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.417;DP=204;Dels=0.00;FS=5.242;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;MQRankSum=1.159;QD=19.48;ReadPosRankSum=3.383;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:4,200:204:99:3974,453,0 chrIX 134788 . T C 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.189;DP=212;Dels=0.00;FS=5.161;HaplotypeScore=14.5491;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;MQRankSum=-0.202;QD=18.63;ReadPosRankSum=3.419;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:4,208:212:99:3950,450,0 chrIX 134885 . A G 4411.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;QD=19.60;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4411,504,0 chrIX 134890 . C T 4342.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=19.92;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4342,483,0 chrIX 134917 . A G 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=213;Dels=0.00;FS=3.026;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;MQRankSum=-0.248;QD=17.04;ReadPosRankSum=2.323;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:3629,405,0 chrIX 134920 . G A 3456.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=17.02;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3456,375,0 chrIX 135055 . T C 3519.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=18.52;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:3519,405,0 chrIX 135075 . A G 3479.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=19.22;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3479,396,0 chrIX 135273 . C T 2532 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.26;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2565,288,0 chrIX 135274 . T A 2493 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=20.27;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2526,288,0 chrIX 135361 . T C 2648 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.69;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2681,312,0 chrIX 135577 . A G 2771 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6954;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.08;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2804,318,0 chrIX 135584 . A C 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.083;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.083;QD=18.47;ReadPosRankSum=0.798;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2508,276,0 chrIX 135647 . G A 2993 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.6608;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=18.94;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3026,342,0 chrIX 135832 . A G 4185.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=22.99;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4185,483,0 chrIX 135991 . G C 2665 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.6071;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.04;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2698,306,0 chrIX 136028 . C T 2894 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.12;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2927,321,0 chrIX 136075 . A G 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=121;Dels=0.00;FS=2.692;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.213;QD=17.74;ReadPosRankSum=2.328;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2179,255,0 chrIX 136100 . T C 1800 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.75;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1833,207,0 chrIX 136172 . T C 1526 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.12;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1559,174,0 chrIX 136210 . A T 1009 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=41.0207;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=21.02;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1042,120,0 chrIX 136356 . T A 929 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.82;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:99:962,105,0 chrIX 136430 . G A 195.01 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.93;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,13:14:27:228,27,0 chrIX 136527 . A G 1311 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.74;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1344,150,0 chrIX 136579 . G C 937 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.31;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,41:42:99:970,111,0 chrIX 136594 . G A 730 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=19.73;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:81:763,81,0 chrIX 136762 . G A 2266 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.11;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2299,255,0 chrIX 137119 . G A 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;DP=69;Dels=0.04;FS=0.000;HaplotypeScore=22.5427;MLEAC=1;MLEAF=0.500;MQ=43.82;MQ0=0;MQRankSum=-2.372;QD=0.52;ReadPosRankSum=0.127;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:50,16:66:66:66,0,778 chrIX 137120 . C T 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.730;DP=67;Dels=0.04;FS=0.000;HaplotypeScore=21.7540;MLEAC=1;MLEAF=0.500;MQ=43.25;MQ0=0;MQRankSum=-2.899;QD=0.55;ReadPosRankSum=1.291;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:50,14:64:67:67,0,787 chrIX 137153 . T C 534.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=38.98;MQ0=0;MQRankSum=1.174;QD=8.75;ReadPosRankSum=5.455;SB=-3.790e+02 GT:AD:DP:GQ:PL 0/1:24,37:61:99:564,0,122 chrIX 137159 . C A 73.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.008;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=1;MLEAF=0.500;MQ=41.07;MQ0=0;MQRankSum=-3.155;QD=1.18;ReadPosRankSum=-5.416;SB=-1.460e+02 GT:AD:DP:GQ:PL 0/1:43,18:62:99:103,0,692 chrIX 137160 . A T 976 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;QD=15.49;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1009,114,0 chrIX 137606 . G A 2930 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.44;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2963,339,0 chrIX 137767 . A C 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.166;QD=23.67;ReadPosRankSum=1.699;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2495,279,0 chrIX 138065 . T C 1303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=74;Dels=0.00;FS=6.570;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=0.317;QD=17.61;ReadPosRankSum=2.317;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1336,153,0 chrIX 138080 . G C 1244 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=16.37;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1277,147,0 chrIX 138231 . A G 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;MQRankSum=-0.565;QD=20.75;ReadPosRankSum=2.295;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2336,273,0 chrIX 138240 . G A 2274 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=20.49;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2307,258,0 chrIX 138253 . C T 2200 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=20.95;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2233,252,0 chrIX 138293 . C T 1514 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=15.14;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1547,177,0 chrIX 138305 . T C 1473 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=14.88;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1506,174,0 chrIX 138341 . G C 1697 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=15.43;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1730,204,0 chrIX 138346 . T C 1713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=-0.906;QD=15.72;ReadPosRankSum=1.700;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1746,204,0 chrIX 138372 . C G 1504 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=15.19;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1537,174,0 chrIX 138455 . A C 1892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=2.897;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;MQRankSum=-0.755;QD=17.85;ReadPosRankSum=2.380;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1925,219,0 chrIX 138486 . T C 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=116;Dels=0.00;FS=8.482;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;MQRankSum=-0.901;QD=18.46;ReadPosRankSum=2.026;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2174,243,0 chrIX 138495 . C T 2185 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=19.17;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2218,246,0 chrIX 138652 . C A 1369 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=81;Dels=0.05;FS=0.000;HaplotypeScore=12.3868;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;MQRankSum=0.697;QD=16.90;ReadPosRankSum=1.237;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1402,159,0 chrIX 138653 . C A 1372 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.05;FS=0.000;HaplotypeScore=12.3868;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;QD=16.94;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1405,162,0 chrIX 138654 . C A 1423 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.05;FS=0.000;HaplotypeScore=12.3868;MLEAC=2;MLEAF=1.00;MQ=37.04;MQ0=0;QD=17.79;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1456,165,0 chrIX 138686 . G A 1682 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=17.89;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1715,198,0 chrIX 138710 . T C 1655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=97;Dels=0.00;FS=3.388;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=0;MQRankSum=-0.613;QD=17.06;ReadPosRankSum=-0.289;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1688,178,0 chrIX 138723 . T C 1789 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=40.97;MQ0=0;QD=19.45;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1822,207,0 chrIX 138838 . G C 1804 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.51;MQ0=0;QD=14.67;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1837,210,0 chrIX 138848 . C T 1766 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.20;MQ0=0;QD=13.18;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1799,204,0 chrIX 138871 . A G 2242 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=14.85;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2275,261,0 chrIX 138886 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=14.76;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2468,285,0 chrIX 138921 . G C 2072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.272;DP=171;Dels=0.00;FS=3.601;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=40.03;MQ0=0;MQRankSum=2.144;QD=12.12;ReadPosRankSum=2.421;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:2,167:171:99:2105,249,0 chrIX 138922 . T G 2066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.167;DP=169;Dels=0.00;FS=3.601;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;MQRankSum=0.981;QD=12.22;ReadPosRankSum=2.421;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:2099,249,0 chrIX 138951 . G C 1481 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=36.81;MQ0=0;QD=11.31;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1514,177,0 chrIX 138983 . C T 790 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;QD=8.59;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:90:823,90,0 chrIX 139006 . T C 715 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;QD=8.61;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:84:748,84,0 chrIX 139017 . G C 906 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=0;QD=10.92;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:939,108,0 chrIX 139047 . C T 1836 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=16.11;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1869,213,0 chrIX 139348 . C T 1855 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=15.46;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1888,207,0 chrIX 139370 . A G 1782 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=16.20;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1815,213,0 chrIX 139542 . T A 2321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=110;Dels=0.00;FS=3.338;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=0.472;QD=21.10;ReadPosRankSum=1.669;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2354,264,0 chrIX 139685 . T C 2863 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.37;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2896,327,0 chrIX 139695 . T C 2750 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=21.83;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2783,318,0 chrIX 139714 . T G 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.302;QD=21.12;ReadPosRankSum=1.595;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2694,303,0 chrIX 140602 . C T 2106 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.40;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2139,237,0 chrIX 140709 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.56;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3340,378,0 chrIX 140853 . G A 3429.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.8900;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.41;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3429,369,0 chrIX 140880 . T C 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=4.852;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.642;QD=20.11;ReadPosRankSum=1.711;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3278,375,0 chrIX 140910 . C T 3176 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.03;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3209,345,0 chrIX 140960 . A T 3176 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.1214;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.53;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3209,348,0 chrIX 141013 . G A 2765 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.60;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2798,318,0 chrIX 141022 . A G 2702 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=21.28;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2735,306,0 chrIX 141141 . C T 2905 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.24;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2938,318,0 chrIX 141212 . T C 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.060;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=1.224;QD=22.65;ReadPosRankSum=1.702;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2660,286,0 chrIX 141321 . T G 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=-0.624;QD=18.80;ReadPosRankSum=1.704;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,124:128:99:2439,279,0 chrIX 141332 . C T 2263 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.4516;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=17.68;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2296,258,0 chrIX 141419 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=21.13;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3267,372,0 chrIX 141469 . G A 369.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;DP=168;Dels=0.00;FS=2.896;HaplotypeScore=126.0334;MLEAC=1;MLEAF=0.500;MQ=39.12;MQ0=0;MQRankSum=0.620;QD=2.20;ReadPosRankSum=-6.143;SB=-5.100e+02 GT:AD:DP:GQ:PL 0/1:103,59:168:42:399,0,42 chrIX 141496 . C G 2007 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;QD=12.39;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2040,228,0 chrIX 141593 . A T 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4039;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=1.145;QD=19.59;ReadPosRankSum=1.703;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2345,252,0 chrIX 141727 . T C 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=117;Dels=0.00;FS=3.655;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=0.269;QD=21.15;ReadPosRankSum=1.702;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2507,294,0 chrIX 141911 . A G 2748 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3503;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=22.16;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2781,327,0 chrIX 141932 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.60;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2745,318,0 chrIX 141990 . A G 2304 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.89;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2337,270,0 chrIX 142169 . G A 2393 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.04;FS=0.000;HaplotypeScore=6.9883;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=19.30;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2426,279,0 chrIX 142171 . A T 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.563;DP=126;Dels=0.00;FS=22.090;HaplotypeScore=6.9883;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=0;MQRankSum=-3.471;QD=19.15;ReadPosRankSum=3.678;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:6,120:126:99:2446,285,0 chrIX 142201 . A G 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.304;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;MQRankSum=-0.534;QD=21.51;ReadPosRankSum=1.700;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2335,270,0 chrIX 142244 . T C 2306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=103;Dels=0.00;FS=3.501;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;MQRankSum=0.622;QD=22.39;ReadPosRankSum=-0.286;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2339,234,0 chrIX 142343 . G A 2348 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;QD=19.57;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2381,270,0 chrIX 142390 . C T 863 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.5177;MLEAC=2;MLEAF=1.00;MQ=31.64;MQ0=0;QD=10.03;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:896,102,0 chrIX 142413 . G T 955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.875;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0295;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=0;MQRankSum=-0.943;QD=9.46;ReadPosRankSum=0.566;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:87:988,87,0 chrIX 142456 . A T 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.924;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.73;MQ0=0;MQRankSum=-1.165;QD=14.34;ReadPosRankSum=1.672;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1696,189,0 chrIX 142469 . T G 1555 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.087;DP=120;Dels=0.00;FS=3.890;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=29.32;MQ0=0;MQRankSum=0.953;QD=12.96;ReadPosRankSum=0.144;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1588,162,0 chrIX 142470 . A G 1584 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=3.890;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.32;MQ0=0;MQRankSum=-1.732;QD=13.20;ReadPosRankSum=1.703;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1617,186,0 chrIX 142478 . C A 1481 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=12.24;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1514,168,0 chrIX 142488 . C G 1583 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=108.2489;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=12.77;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1616,180,0 chrIX 142542 . T C 1295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=3.050;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.72;MQ0=0;MQRankSum=0.714;QD=11.56;ReadPosRankSum=2.406;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1328,156,0 chrIX 142544 . C A 1381 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5678;MLEAC=2;MLEAF=1.00;MQ=35.03;MQ0=0;QD=12.22;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1414,159,0 chrIX 142556 . G T 1312 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=0;QD=11.51;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1345,156,0 chrIX 142573 . G A 2011 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;QD=16.48;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2044,228,0 chrIX 142618 . G T 3191 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=22.01;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3224,360,0 chrIX 142906 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.285;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.712;QD=22.42;ReadPosRankSum=-1.566;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3273,340,0 chrIX 143092 . G A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.62;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3325,372,0 chrIX 143302 . C T 3491.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.0612;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.52;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3491,378,0 chrIX 143414 . T C 3983.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.3151;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3983,456,0 chrIX 143458 . C A 3981.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.7024;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3981,441,0 chrIX 143620 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.113;QD=20.73;ReadPosRankSum=1.712;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3524,408,0 chrIX 144130 . T C 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;DP=28;Dels=0.00;FS=9.161;HaplotypeScore=129.2114;MLEAC=1;MLEAF=0.500;MQ=41.57;MQ0=0;MQRankSum=0.586;QD=0.40;ReadPosRankSum=-1.561;SB=-6.692e-03 GT:AD:DP:GQ:PL 0/1:21,5:28:41:41,0,41 chrIX 144792 . T C 3869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=182;Dels=0.00;FS=4.491;HaplotypeScore=11.2769;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.597;QD=21.26;ReadPosRankSum=1.674;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3869,447,0 chrIX 145805 . T A 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=160;Dels=0.00;FS=6.048;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.069;QD=21.16;ReadPosRankSum=2.373;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3385,384,0 chrIX 145892 . A G 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=21.61;ReadPosRankSum=1.671;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3674,414,0 chrIX 146023 . G T 3035 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.2981;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.93;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3068,336,0 chrIX 146043 . T C 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.488;QD=20.76;ReadPosRankSum=1.708;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3022,351,0 chrIX 146193 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.59;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3250,375,0 chrIX 146276 . C T 3705.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.75;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3705,423,0 chrIX 146460 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.57;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3247,366,0 chrIX 146901 . A G 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.813;DP=175;Dels=0.00;FS=18.462;HaplotypeScore=12.1864;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;MQRankSum=-1.268;QD=13.97;ReadPosRankSum=4.487;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:25,150:175:33:2477,33,0 chrIX 146913 . T C 1987.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;DP=155;Dels=0.00;FS=24.356;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=38.93;MQ0=0;MQRankSum=-0.393;QD=12.82;ReadPosRankSum=1.199;SB=-1.292e+03 GT:AD:DP:GQ:PL 0/1:24,131:155:99:2017,0,126 chrIX 146919 . A G 1607.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.413;DP=156;Dels=0.00;FS=24.891;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=38.47;MQ0=0;MQRankSum=-2.174;QD=10.30;ReadPosRankSum=-0.896;SB=-1.293e+03 GT:AD:DP:GQ:PL 0/1:24,132:156:99:1637,0,165 chrIX 146928 . C T 1488.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;DP=149;Dels=0.00;FS=31.072;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=39.14;MQ0=0;MQRankSum=-1.015;QD=9.99;ReadPosRankSum=-6.468;SB=-1.053e+03 GT:AD:DP:GQ:PL 0/1:24,125:149:99:1518,0,186 chrIX 146932 . G A 2126 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.45;MQ0=0;QD=14.17;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2159,240,0 chrIX 146991 . T C 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;DP=197;Dels=0.00;FS=33.164;HaplotypeScore=414.1443;MLEAC=1;MLEAF=0.500;MQ=48.22;MQ0=0;MQRankSum=-5.187;QD=0.23;ReadPosRankSum=0.800;SB=-4.220e+02 GT:AD:DP:GQ:PL 0/1:117,80:197:75:75,0,2028 chrIX 146997 . G A 2105.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.327;DP=222;Dels=0.00;FS=15.165;HaplotypeScore=28.4082;MLEAC=1;MLEAF=0.500;MQ=47.85;MQ0=0;MQRankSum=7.329;QD=9.48;ReadPosRankSum=2.796;SB=-1.061e+03 GT:AD:DP:GQ:PL 0/1:104,117:222:99:2135,0,245 chrIX 147006 . C T 290.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.311;DP=249;Dels=0.00;FS=5.109;HaplotypeScore=35.3000;MLEAC=1;MLEAF=0.500;MQ=48.34;MQ0=0;MQRankSum=-8.384;QD=1.16;ReadPosRankSum=-3.663;SB=-9.800e+02 GT:AD:DP:GQ:PL 0/1:130,117:249:99:320,0,2525 chrIX 147036 . A C,G 2768.01 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-4.275;DP=340;Dels=0.01;FS=29.066;HaplotypeScore=73.0402;MLEAC=1,1;MLEAF=0.500,0.500;MQ=43.61;MQ0=0;MQRankSum=0.475;QD=8.14;ReadPosRankSum=9.332;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/2:86,87,163:337:99:2828,2295,2653,148,0,258 chrIX 147051 . G T 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.897;DP=342;Dels=0.01;FS=19.269;HaplotypeScore=117.4489;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;MQRankSum=-1.556;QD=10.59;ReadPosRankSum=7.891;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:56,282:339:99:3623,161,0 chrIX 147057 . A G 766.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;DP=351;Dels=0.01;FS=6.520;HaplotypeScore=95.5158;MLEAC=1;MLEAF=0.500;MQ=43.75;MQ0=0;MQRankSum=-7.724;QD=2.18;ReadPosRankSum=2.821;SB=-9.000e+02 GT:AD:DP:GQ:PL 0/1:207,140:348:99:796,0,2590 chrIX 147092 . A G 2244.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.955;DP=305;Dels=0.00;FS=13.611;HaplotypeScore=28.8556;MLEAC=1;MLEAF=0.500;MQ=45.72;MQ0=0;MQRankSum=1.259;QD=7.36;ReadPosRankSum=1.535;SB=-1.658e+03 GT:AD:DP:GQ:PL 0/1:126,178:305:99:2274,0,1319 chrIX 147114 . G C 229.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;DP=282;Dels=0.00;FS=30.881;HaplotypeScore=34.8066;MLEAC=1;MLEAF=0.500;MQ=48.66;MQ0=0;MQRankSum=-4.270;QD=0.81;ReadPosRankSum=-0.803;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:208,72:282:99:259,0,3308 chrIX 147119 . C T 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.161;DP=253;Dels=0.00;FS=47.245;HaplotypeScore=22.9764;MLEAC=1;MLEAF=0.500;MQ=50.58;MQ0=0;MQRankSum=-2.447;QD=0.12;ReadPosRankSum=-1.365;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:192,54:253:60:60,0,3217 chrIX 147145 . T G 4997.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.1413;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=22.51;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4997,567,0 chrIX 147273 . T C 3772.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=20.61;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3772,441,0 chrIX 147411 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.4766;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.19;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3452,393,0 chrIX 147544 . T C 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.102;QD=22.53;ReadPosRankSum=2.422;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3965,462,0 chrIX 147576 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.9331;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.68;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3516,387,0 chrIX 147684 . G A 4665.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4665,516,0 chrIX 147738 . C T 3841.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.4244;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.54;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3841,435,0 chrIX 147792 . T C 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=204;Dels=0.00;FS=9.372;HaplotypeScore=14.2285;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.331;QD=19.17;ReadPosRankSum=2.425;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:2,200:204:99:3910,447,0 chrIX 148037 . C T 2953 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.2019;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.44;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2986,324,0 chrIX 148204 . A G 2983 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7304;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.26;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3016,336,0 chrIX 148268 . A T 2064 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.19;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2097,231,0 chrIX 148511 . G A 3125 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.9217;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.15;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3158,345,0 chrIX 148776 . G A 2531 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=19.93;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2564,288,0 chrIX 148798 . T A 2682 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=22.54;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2715,297,0 chrIX 148834 . A C 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=4.342;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=0.719;QD=22.04;ReadPosRankSum=1.601;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2391,276,0 chrIX 148892 . C T 1704 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=20.05;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1737,192,0 chrIX 148925 . C T 1663 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.34;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1696,186,0 chrIX 149011 . T C 2057 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=94.7634;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=19.22;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2090,249,0 chrIX 149028 . C T 2140 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=91.6634;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=21.84;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2173,237,0 chrIX 149246 . T A 2029 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.05;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2062,225,0 chrIX 149435 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.7800;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.610;QD=21.51;ReadPosRankSum=1.712;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3786,444,0 chrIX 149536 . G T 4314.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.3001;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.32;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4314,468,0 chrIX 149769 . T C 4105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-1.528;QD=21.95;ReadPosRankSum=1.714;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4105,465,0 chrIX 149978 . C G 3460.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.10;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3460,399,0 chrIX 149985 . C T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.19;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3794,414,0 chrIX 150043 . A G 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=16.0400;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.360;QD=20.62;ReadPosRankSum=1.713;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:3691,417,0 chrIX 150163 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.3293;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.85;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3278,384,0 chrIX 150261 . T C 3941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.161;QD=22.91;ReadPosRankSum=1.692;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3941,462,0 chrIX 150521 . T C 5138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.634;DP=236;Dels=0.00;FS=7.840;HaplotypeScore=15.5941;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.885;QD=21.77;ReadPosRankSum=3.820;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:5,230:236:99:5138,594,0 chrIX 150599 . C T 4780.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.0714;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.93;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,214:218:99:4780,543,0 chrIX 150780 . C T 6498.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=12.2930;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=19.63;SB=-3.334e+03 GT:AD:DP:GQ:PL 1/1:0,328:331:99:6498,735,0 chrIX 150789 . A G 6229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=321;Dels=0.00;FS=11.796;HaplotypeScore=14.8145;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=0.270;QD=19.41;ReadPosRankSum=2.934;SB=-3.294e+03 GT:AD:DP:GQ:PL 1/1:3,317:321:99:6229,702,0 chrIX 150834 . A G 5933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.276;DP=319;Dels=0.00;FS=16.976;HaplotypeScore=20.0260;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.488;QD=18.60;ReadPosRankSum=3.331;SB=-2.820e+03 GT:AD:DP:GQ:PL 1/1:4,315:319:99:5933,698,0 chrIX 150939 . C T 7371.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=15.1787;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.68;SB=-3.648e+03 GT:AD:DP:GQ:PL 1/1:0,324:325:99:7371,816,0 chrIX 150979 . C A 6827.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=19.1716;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.61;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:0,301:302:99:6827,753,0 chrIX 151377 . A G 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=3.424;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.210;QD=22.31;ReadPosRankSum=1.653;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2978,333,0 chrIX 151394 . T C 2823 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6212;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.40;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2856,321,0 chrIX 151503 . A C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=2.894;HaplotypeScore=161.8066;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=-0.840;QD=0.10;ReadPosRankSum=2.406;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:6:48,6,0 chrIX 151709 . G A 3069 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=16.50;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3102,345,0 chrIX 151727 . G A 2538 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.16;MQ0=0;QD=14.26;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:2571,294,0 chrIX 151731 . A G 2358 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.5726;MLEAC=2;MLEAF=1.00;MQ=41.18;MQ0=0;QD=12.22;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:2391,276,0 chrIX 151767 . G A 2237 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=0;QD=10.50;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:2270,252,0 chrIX 151775 . T C 2050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=42.38;MQ0=0;MQRankSum=-0.971;QD=10.05;ReadPosRankSum=2.425;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:2,199:204:99:2083,234,0 chrIX 151788 . T G 2524 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.6202;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=12.43;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:2557,288,0 chrIX 151869 . C T 4796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.951;DP=248;Dels=0.00;FS=2.963;HaplotypeScore=5.1745;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;MQRankSum=-1.033;QD=19.34;ReadPosRankSum=2.430;SB=-2.728e+03 GT:AD:DP:GQ:PL 1/1:2,245:248:99:4796,492,0 chrIX 151882 . T C 4608.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=19.04;SB=-2.956e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:4608,537,0 chrIX 151917 . G A 3371.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=16.21;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:3371,378,0 chrIX 151918 . C T 3441.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=0;QD=16.62;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3441,378,0 chrIX 152033 . C T 4185.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=19.8040;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.74;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4185,459,0 chrIX 152184 . T A 3819.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=24.64;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3819,414,0 chrIX 152419 . A T 4296.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.01;FS=0.000;HaplotypeScore=10.0245;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4296,468,0 chrIX 153385 . T A 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-1.538;QD=20.94;ReadPosRankSum=1.668;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3371,372,0 chrIX 153400 . A T 3565.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.73;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3565,393,0 chrIX 153463 . A G 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.5762;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.682;QD=20.37;ReadPosRankSum=1.690;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3381,390,0 chrIX 153611 . G A 4253.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.01;FS=0.000;HaplotypeScore=15.9443;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.70;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4253,477,0 chrIX 153725 . A G 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=3.979;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.584;QD=20.99;ReadPosRankSum=1.673;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3674,414,0 chrIX 154387 . C T 3715.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.0321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3715,408,0 chrIX 154792 . C T 3151 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.17;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3184,348,0 chrIX 154834 . A G 3061 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=15.0679;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.71;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3094,342,0 chrIX 154922 . A G 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.291;QD=21.53;ReadPosRankSum=1.666;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3380,390,0 chrIX 155016 . G A 2546 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.37;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2579,282,0 chrIX 155033 . A T 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=121;Dels=0.00;FS=2.800;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-0.010;QD=19.82;ReadPosRankSum=2.389;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2431,276,0 chrIX 155162 . A T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.7268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3347,369,0 chrIX 155480 . A C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=156;Dels=0.00;FS=2.973;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-0.024;QD=21.47;ReadPosRankSum=2.386;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3349,372,0 chrIX 155494 . A C 3652.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.40;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3652,408,0 chrIX 155570 . C A 2722 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=17.3560;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.78;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2755,303,0 chrIX 155702 . C T 3190 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=24.17;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3223,357,0 chrIX 155792 . G A 1829 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.78;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1862,207,0 chrIX 156015 . A G 3408.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.04;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3408,381,0 chrIX 156029 . G A 3430.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.3368;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=19.27;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3430,399,0 chrIX 156304 . A G 4438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=200;Dels=0.00;FS=3.019;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.685;QD=22.19;ReadPosRankSum=2.413;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:4438,501,0 chrIX 156711 . G T 4655.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.60;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4655,507,0 chrIX 156724 . A C 4303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.418;DP=210;Dels=0.00;FS=2.067;HaplotypeScore=6.6015;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-0.419;QD=20.49;ReadPosRankSum=3.130;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:4,202:210:99:4303,483,0 chrIX 156752 . T C 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=205;Dels=0.00;FS=3.005;HaplotypeScore=20.0595;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=1.052;QD=19.21;ReadPosRankSum=2.377;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:2,200:205:99:3938,459,0 chrIX 156854 . A C 4808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=219;Dels=0.00;FS=5.814;HaplotypeScore=19.9438;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.659;QD=21.95;ReadPosRankSum=2.958;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:3,212:219:99:4808,537,0 chrIX 156976 . A G 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=190;Dels=0.00;FS=2.939;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;MQRankSum=0.407;QD=21.24;ReadPosRankSum=2.398;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4036,456,0 chrIX 156990 . G A 4098.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=21.46;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4098,444,0 chrIX 157619 . A G 4115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.258;DP=183;Dels=0.00;FS=13.814;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.341;QD=22.49;ReadPosRankSum=3.412;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:4,178:183:99:4115,465,0 chrIX 157805 . G A 4537.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.9253;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.00;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4537,516,0 chrIX 157961 . C G 4695.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=4.7645;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=19.98;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:4695,549,0 chrIX 157967 . G A 5076.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=21.51;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5076,561,0 chrIX 158276 . T G 4815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=226;Dels=0.00;FS=8.223;HaplotypeScore=21.3669;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.255;QD=21.31;ReadPosRankSum=2.428;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:4815,555,0 chrIX 158408 . G A 4364.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.50;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4364,504,0 chrIX 158843 . T C 3151 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3184,357,0 chrIX 159008 . C T 2977 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.38;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3010,342,0 chrIX 159221 . G A 3314.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=19.61;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3314,366,0 chrIX 159222 . G T 3180 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=18.82;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3213,363,0 chrIX 159305 . C G 4433.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.43;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:4433,510,0 chrIX 159542 . T C 7024.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=9.8236;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.88;SB=-3.497e+03 GT:AD:DP:GQ:PL 1/1:0,318:321:99:7024,792,0 chrIX 159842 . A G 7541.01 filter AC=2;AF=1.00;AN=2;DP=375;Dels=0.00;FS=0.000;HaplotypeScore=16.2746;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.11;SB=-3.711e+03 GT:AD:DP:GQ:PL 1/1:0,374:375:99:7541,858,0 chrIX 159862 . G A 8071.01 filter AC=2;AF=1.00;AN=2;DP=398;Dels=0.00;FS=0.000;HaplotypeScore=14.3395;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=20.28;SB=-4.672e+03 GT:AD:DP:GQ:PL 1/1:0,396:398:99:8071,880,0 chrIX 159974 . A G 6050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=17.7885;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.922;QD=19.52;ReadPosRankSum=1.653;SB=-3.317e+03 GT:AD:DP:GQ:PL 1/1:1,307:310:99:6050,707,0 chrIX 160022 . C T 6468.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=28.5245;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.60;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:0,311:314:99:6468,723,0 chrIX 160098 . A G 6199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.719;DP=318;Dels=0.00;FS=4.860;HaplotypeScore=42.4045;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.257;QD=19.49;ReadPosRankSum=3.793;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:5,310:318:99:6199,723,0 chrIX 160170 . C T 4453.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=20.3365;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.51;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,201:207:99:4453,513,0 chrIX 160224 . C T 4504.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=15.5792;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=24.09;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4504,492,0 chrIX 160449 . A G 3694.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=172;Dels=0.00;FS=3.007;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-1.207;QD=21.48;ReadPosRankSum=2.392;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3694,411,0 chrIX 160453 . G A 3769.01 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=22.43;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3769,411,0 chrIX 160457 . G A 3639.01 SnpCluster AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.56;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3639,411,0 chrIX 160514 . T C 2947 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.8185;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=18.42;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2980,345,0 chrIX 160764 . T C 2692 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.21;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2725,309,0 chrIX 161063 . C G 7169.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=24.6909;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.86;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:0,319:328:99:7169,842,0 chrIX 161147 . A G 7411.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=362;Dels=0.00;FS=3.552;HaplotypeScore=13.7815;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.558;QD=20.47;ReadPosRankSum=1.722;SB=-4.064e+03 GT:AD:DP:GQ:PL 1/1:1,357:362:99:7411,863,0 chrIX 161168 . C A 7418.01 filter AC=2;AF=1.00;AN=2;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=10.1297;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.49;SB=-4.757e+03 GT:AD:DP:GQ:PL 1/1:0,362:362:99:7418,819,0 chrIX 161738 . T C 4324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=207;Dels=0.00;FS=3.053;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.807;QD=20.89;ReadPosRankSum=1.698;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4324,498,0 chrIX 161795 . T C 5312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=251;Dels=0.00;FS=3.851;HaplotypeScore=16.1233;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.208;QD=21.16;ReadPosRankSum=1.663;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:1,249:251:99:5312,606,0 chrIX 161894 . A G 5158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=248;Dels=0.00;FS=5.519;HaplotypeScore=11.3422;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.343;QD=20.80;ReadPosRankSum=2.923;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:3,243:248:99:5158,591,0 chrIX 161947 . G A 3663.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.55;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3663,396,0 chrIX 162177 . T C 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=169;Dels=0.00;FS=3.036;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.182;QD=22.44;ReadPosRankSum=2.290;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3792,432,0 chrIX 162266 . T C 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=177;Dels=0.00;FS=3.024;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.547;QD=21.21;ReadPosRankSum=2.366;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3754,435,0 chrIX 162478 . G A 3931.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.6511;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3931,429,0 chrIX 162982 . T C 1183 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.1342;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=14.08;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1216,141,0 chrIX 163161 . C T 536 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=20.62;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:63:569,63,0 chrIX 163176 . A G 504 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=19.38;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:60:537,60,0 chrIX 163185 . A G 461 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=17.73;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:54:494,54,0 chrIX 163200 . T A 364 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=15.17;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:45:397,45,0 chrIX 163245 . A T 69.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.977;DP=21;Dels=0.00;FS=13.222;HaplotypeScore=3.6868;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;MQRankSum=-1.498;QD=3.31;ReadPosRankSum=2.216;SB=-5.452e+01 GT:AD:DP:GQ:PL 1/1:2,19:21:12:102,12,0 chrIX 163296 . G A 1327 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1360,153,0 chrIX 163353 . A G 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=9.363;HaplotypeScore=4.6087;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.419;QD=24.99;ReadPosRankSum=1.659;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2407,261,0 chrIX 163686 . G A 4317.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.7909;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.16;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4317,486,0 chrIX 163812 . C T 4120.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.76;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4120,459,0 chrIX 164017 . C T 3990.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3990,441,0 chrIX 164332 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.87;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2920,321,0 chrIX 164475 . A G 2754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=119;Dels=0.00;FS=6.124;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.602;QD=23.14;ReadPosRankSum=2.941;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2787,315,0 chrIX 164504 . G T 2235 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.2002;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.58;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2268,252,0 chrIX 164522 . G A 2208 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.53;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2241,249,0 chrIX 164883 . G A 2678 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2711,309,0 chrIX 165018 . A G 2139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=3.291;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-1.155;QD=22.05;ReadPosRankSum=1.696;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2172,249,0 chrIX 165039 . C G 2474 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.89;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2507,282,0 chrIX 165330 . G A 3286.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.31;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3286,375,0 chrIX 166116 . G C 2224 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.93;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2257,258,0 chrIX 166141 . T A 2292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.562;QD=22.25;ReadPosRankSum=1.562;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2325,252,0 chrIX 166175 . C T 1843 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.43;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1876,210,0 chrIX 166203 . C T 1800 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.69;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1833,204,0 chrIX 166298 . C A 2519 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2552,285,0 chrIX 166383 . A G 2288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=100;Dels=0.00;FS=4.318;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.594;QD=22.88;ReadPosRankSum=1.663;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2321,264,0 chrIX 166442 . G A 2780 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.89;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2813,318,0 chrIX 166463 . A C 3047 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.16;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3080,360,0 chrIX 166510 . T C 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.139;QD=21.86;ReadPosRankSum=1.708;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3247,363,0 chrIX 166640 . T C 4559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=180.4098;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.391;QD=20.82;ReadPosRankSum=1.716;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:1,216:219:99:4559,519,0 chrIX 166805 . T C 5870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=275;Dels=0.00;FS=5.662;HaplotypeScore=17.7570;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.335;QD=21.35;ReadPosRankSum=2.938;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:3,270:275:99:5870,669,0 chrIX 167048 . A G 5275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=237;Dels=0.00;FS=2.964;HaplotypeScore=18.1831;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.689;QD=22.26;ReadPosRankSum=2.429;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:2,235:237:99:5275,612,0 chrIX 167564 . G A 2756 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.36;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2789,306,0 chrIX 167635 . T C 3037 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3070,354,0 chrIX 167769 . T C 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.621;DP=149;Dels=0.00;FS=12.005;HaplotypeScore=5.4008;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.659;QD=23.01;ReadPosRankSum=3.663;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:5,144:149:99:3429,381,0 chrIX 167860 . T C 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.915;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=15.3731;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.923;QD=21.99;ReadPosRankSum=0.328;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3540,396,0 chrIX 168127 . T C 3497.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.57;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3497,393,0 chrIX 168175 . A G 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.6130;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.197;QD=17.72;ReadPosRankSum=1.711;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3028,345,0 chrIX 168187 . A G 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.351;QD=18.31;ReadPosRankSum=1.688;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:2945,333,0 chrIX 168217 . T C 2421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.899;DP=134;Dels=0.00;FS=6.875;HaplotypeScore=6.3319;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.395;QD=18.07;ReadPosRankSum=1.018;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2454,262,0 chrIX 168244 . C T 2530 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=18.20;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2563,291,0 chrIX 168355 . G A 2379 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.2391;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.44;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2412,264,0 chrIX 168539 . T C 2113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.405;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=12.6066;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.307;QD=19.93;ReadPosRankSum=1.699;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2146,252,0 chrIX 168871 . C T 2604 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.60;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2637,303,0 chrIX 168934 . A G 4940.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.9223;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.19;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4940,552,0 chrIX 169225 . C A 4368.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=16.6509;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.73;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4368,480,0 chrIX 169256 . A G 4089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=197;Dels=0.01;FS=2.915;HaplotypeScore=13.8404;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=-0.930;QD=20.76;ReadPosRankSum=2.399;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4089,456,0 chrIX 169445 . C G 2923 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.7678;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=17.82;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:2956,333,0 chrIX 169544 . C T 2734 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5595;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=18.47;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2767,300,0 chrIX 169666 . C G 3038 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=19.11;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3071,348,0 chrIX 169671 . A G 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=157;Dels=0.00;FS=2.870;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;MQRankSum=-1.025;QD=20.16;ReadPosRankSum=2.387;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3198,366,0 chrIX 170146 . T C 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.764;DP=183;Dels=0.00;FS=6.026;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-1.577;QD=20.74;ReadPosRankSum=2.863;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:3,180:183:99:3795,429,0 chrIX 170156 . C A 4134.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.98;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4134,456,0 chrIX 170201 . A G 3964.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.8707;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=18.27;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:3964,468,0 chrIX 170432 . A T 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=179;Dels=0.00;FS=3.292;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.089;QD=21.13;ReadPosRankSum=1.613;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3782,429,0 chrIX 170717 . C T 4561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.730;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.528;QD=22.03;ReadPosRankSum=1.002;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4561,487,0 chrIX 170921 . A T 4234.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4234,462,0 chrIX 171065 . C T 4166.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.93;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4166,465,0 chrIX 171154 . T C 3931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=182;Dels=0.01;FS=0.000;HaplotypeScore=13.9692;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.915;QD=21.60;ReadPosRankSum=1.713;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:3931,435,0 chrIX 171278 . T C 2896 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=18.81;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2929,336,0 chrIX 171281 . A G 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;MQRankSum=-1.639;QD=18.93;ReadPosRankSum=1.709;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2854,327,0 chrIX 171517 . A G 2093 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.26;MQ0=0;QD=19.75;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2126,240,0 chrIX 171518 . G C 2060 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=0;QD=19.62;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2093,234,0 chrIX 171525 . T C 1792 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.38;MQ0=0;QD=17.40;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1825,207,0 chrIX 171535 . C T 1788 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.01;MQ0=0;QD=16.40;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1821,207,0 chrIX 171556 . T A 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.274;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;MQRankSum=-1.698;QD=16.72;ReadPosRankSum=1.698;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1738,192,0 chrIX 171558 . T C 1611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=104;Dels=0.00;FS=9.681;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;MQRankSum=-2.758;QD=15.49;ReadPosRankSum=2.933;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:99:1644,186,0 chrIX 171616 . T A 1746 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.44;MQ0=0;QD=15.59;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1779,195,0 chrIX 171627 . C T 1644 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.00;MQ0=0;QD=13.93;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1677,192,0 chrIX 171632 . G A 1628 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=92.3917;MLEAC=2;MLEAF=1.00;MQ=37.45;MQ0=0;QD=13.91;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1661,183,0 chrIX 171655 . T C 1722 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.0960;MLEAC=2;MLEAF=1.00;MQ=41.35;MQ0=0;QD=14.97;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1755,198,0 chrIX 171701 . G A 2411 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=18.98;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2444,273,0 chrIX 171711 . T A 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;MQRankSum=-0.885;QD=18.38;ReadPosRankSum=1.706;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2570,288,0 chrIX 171806 . A G 3445.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=24.43;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3445,387,0 chrIX 171999 . T C 4326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.283;DP=197;Dels=0.00;FS=17.708;HaplotypeScore=15.1055;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.678;QD=21.96;ReadPosRankSum=4.418;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:7,190:197:99:4326,510,0 chrIX 172044 . G A 4229.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=23.63;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4229,450,0 chrIX 172050 . T A 3716.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=21.86;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3716,414,0 chrIX 172074 . G A 2952 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=19.42;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2985,336,0 chrIX 172231 . G A 3859.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.44;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3859,435,0 chrIX 172433 . T C 3062 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.5077;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.41;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3095,354,0 chrIX 172693 . T C 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=141;Dels=0.00;FS=7.036;HaplotypeScore=11.9153;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.915;QD=21.62;ReadPosRankSum=2.345;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3081,348,0 chrIX 172731 . A G 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=150;Dels=0.00;FS=3.219;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.988;QD=21.46;ReadPosRankSum=1.709;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3252,372,0 chrIX 172920 . T C 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.530;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=-1.055;QD=21.93;ReadPosRankSum=1.680;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2994,348,0 chrIX 173267 . C T 2536 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.03;FS=0.000;HaplotypeScore=112.8537;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.96;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2569,282,0 chrIX 173363 . G T 3437.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.02;FS=0.000;HaplotypeScore=51.8182;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=20.58;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,159:163:99:3437,384,0 chrIX 173732 . G A 3192 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.30;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3225,348,0 chrIX 174017 . A G 4871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=220;Dels=0.00;FS=3.707;HaplotypeScore=18.2349;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-0.786;QD=22.14;ReadPosRankSum=1.684;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:1,215:220:99:4871,543,0 chrIX 174172 . A C 4918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=234;Dels=0.00;FS=2.979;HaplotypeScore=14.5999;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-1.417;QD=21.02;ReadPosRankSum=2.407;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:2,231:234:99:4918,555,0 chrIX 174252 . A G 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=204;Dels=0.00;FS=2.644;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=-0.114;QD=22.70;ReadPosRankSum=2.365;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4631,516,0 chrIX 174273 . A G 4317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=210;Dels=0.00;FS=2.512;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=-1.062;QD=20.56;ReadPosRankSum=2.957;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:3,207:210:99:4317,489,0 chrIX 174304 . T G 3791.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=19.74;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3791,438,0 chrIX 174345 . T A 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=155;Dels=0.00;FS=5.276;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;MQRankSum=0.860;QD=20.57;ReadPosRankSum=1.665;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3221,360,0 chrIX 174391 . T A 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=4.401;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=1.014;QD=21.86;ReadPosRankSum=1.655;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2984,321,0 chrIX 174414 . G A 3111 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=21.76;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3144,357,0 chrIX 174453 . A T 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=3.522;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;MQRankSum=-1.275;QD=22.22;ReadPosRankSum=1.708;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3233,360,0 chrIX 174511 . G C 3826.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=23.19;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3826,435,0 chrIX 174542 . C A 3427.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=20.64;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3427,375,0 chrIX 174546 . T G 3405.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.6008;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=20.03;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3405,378,0 chrIX 174626 . C T 2651 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;QD=19.07;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2684,291,0 chrIX 174641 . G A 2262 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;QD=17.27;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2295,261,0 chrIX 174643 . C T 2357 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.69;MQ0=0;QD=18.13;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2390,261,0 chrIX 174652 . G A 1996 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=39.83;MQ0=0;QD=15.24;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2029,228,0 chrIX 174680 . C A 1810 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.05;MQ0=0;QD=14.96;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1843,201,0 chrIX 174681 . G A 1794 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=14.47;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:1827,201,0 chrIX 174691 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=15.52;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2237,249,0 chrIX 174751 . G A 3600.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=21.43;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3600,405,0 chrIX 174904 . A C 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=39.95;MQ0=0;MQRankSum=1.365;QD=22.64;ReadPosRankSum=1.691;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1957,219,0 chrIX 175006 . A G 1660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.02;MQ0=0;MQRankSum=-2.226;QD=21.56;ReadPosRankSum=2.386;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1693,192,0 chrIX 175120 . C A 154.06 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=8.56;SB=-7.494e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:21:187,21,0 chrIX 175126 . A C 100.26 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=6.27;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:15:133,15,0 chrIX 175220 . A G 919 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;QD=15.58;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:952,108,0 chrIX 175232 . T A 1128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=3.590;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;MQRankSum=-1.245;QD=17.35;ReadPosRankSum=1.678;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1161,129,0 chrIX 175368 . A G 3124 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=20.42;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3157,354,0 chrIX 175374 . G C 2958 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=19.33;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,150:153:99:2991,333,0 chrIX 175484 . A G 4266.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.9145;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.83;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4266,486,0 chrIX 175568 . G A 3929.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.0757;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.35;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3929,435,0 chrIX 175751 . A G 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.807;DP=166;Dels=0.00;FS=2.930;HaplotypeScore=9.1576;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-0.244;QD=18.09;ReadPosRankSum=2.020;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3036,345,0 chrIX 175755 . T G 2740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.5802;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=0.776;QD=16.71;ReadPosRankSum=2.342;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:2,158:164:99:2773,324,0 chrIX 175785 . T C 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.179;DP=160;Dels=0.00;FS=8.777;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.420;QD=17.17;ReadPosRankSum=3.369;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:4,152:160:99:2781,312,0 chrIX 176261 . A G 3751.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.74;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3751,414,0 chrIX 176379 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.90;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3365,378,0 chrIX 176412 . C T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=18.45;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3376,372,0 chrIX 176421 . G T 3591.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=18.51;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3591,390,0 chrIX 176578 . C T 6164.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=18.6654;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.17;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:6164,675,0 chrIX 176678 . G A 5357.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=15.1639;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.37;SB=-2.743e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:5357,618,0 chrIX 176778 . G A 6634.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=20.3303;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.80;SB=-3.131e+03 GT:AD:DP:GQ:PL 1/1:0,314:319:99:6634,759,0 chrIX 177411 . A G 3181 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.56;MQ0=0;QD=21.79;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3214,372,0 chrIX 177448 . T C 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.798;QD=17.52;ReadPosRankSum=1.709;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:2731,315,0 chrIX 177586 . G A 4882.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,197:202:99:4882,543,0 chrIX 177658 . C G 4073.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=14.0545;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.50;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4073,465,0 chrIX 178160 . C T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.48;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4179,459,0 chrIX 178288 . A G 3834.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=22.0388;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.54;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3834,435,0 chrIX 179020 . C A 7045.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=17.7099;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.56;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,298:299:99:7045,789,0 chrIX 179065 . T C 6763.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=18.2636;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.54;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:0,313:314:99:6763,780,0 chrIX 179188 . G T 7835.01 PASS AC=2;AF=1.00;AN=2;DP=360;Dels=0.00;FS=0.000;HaplotypeScore=23.4252;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.76;SB=-4.584e+03 GT:AD:DP:GQ:PL 1/1:0,359:360:99:7835,882,0 chrIX 179273 . A G 5928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=312;Dels=0.00;FS=2.619;HaplotypeScore=21.6483;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.101;QD=19.00;ReadPosRankSum=2.410;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:2,309:312:99:5928,684,0 chrIX 179398 . G A 4433.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=16.7916;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.03;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4433,492,0 chrIX 180248 . C A 2681 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.86;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2714,303,0 chrIX 180349 . A T 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.0850;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.276;QD=22.65;ReadPosRankSum=2.366;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3329,375,0 chrIX 180360 . G A 2753 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.02;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2786,312,0 chrIX 180565 . T A 2572 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=24.26;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2605,288,0 chrIX 180792 . A T 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=3.531;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-0.286;QD=19.20;ReadPosRankSum=1.612;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2260,249,0 chrIX 180798 . C T 2244 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=18.39;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2277,255,0 chrIX 181236 . A G 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=3.502;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.371;QD=22.10;ReadPosRankSum=1.608;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2508,282,0 chrIX 181451 . G C 3021 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3054,345,0 chrIX 181566 . G A 3115 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3148,354,0 chrIX 181677 . A G 3198 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.1504;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3231,366,0 chrIX 181986 . C T 2237 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.30;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2270,252,0 chrIX 183064 . T G 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.147;QD=22.46;ReadPosRankSum=1.708;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3223,372,0 chrIX 183552 . G T 1917 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.84;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1950,213,0 chrIX 183553 . T C 1828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=93;Dels=0.00;FS=3.680;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-0.019;QD=19.66;ReadPosRankSum=1.694;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,90:93:99:1861,213,0 chrIX 183885 . T C 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.605;QD=23.24;ReadPosRankSum=1.705;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2961,345,0 chrIX 184585 . T A 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=3.644;HaplotypeScore=8.1094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.855;QD=22.82;ReadPosRankSum=1.604;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3719,402,0 chrIX 184665 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.8680;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.17;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3345,372,0 chrIX 184857 . T C 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.675;QD=23.57;ReadPosRankSum=1.710;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3654,411,0 chrIX 184925 . C A 3530.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.79;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3530,384,0 chrIX 184947 . T A 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=162;Dels=0.00;FS=2.905;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.468;QD=19.96;ReadPosRankSum=2.404;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3267,372,0 chrIX 185013 . T G 3350.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.7315;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.34;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:3350,375,0 chrIX 185152 . T A 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=4.117;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-1.559;QD=22.34;ReadPosRankSum=1.667;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3597,408,0 chrIX 185367 . T C 2919 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2952,348,0 chrIX 185487 . A G 4095.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.2028;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.14;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,181:185:99:4095,468,0 chrIX 185961 . A G 3864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.259;QD=21.95;ReadPosRankSum=1.672;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3864,453,0 chrIX 186053 . G A 3204 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.56;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3237,348,0 chrIX 186072 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.87;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3453,384,0 chrIX 186216 . G A 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.344;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.4386;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=1.214;QD=20.37;ReadPosRankSum=0.923;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2213,240,0 chrIX 186225 . T C 1968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=101;Dels=0.00;FS=9.113;HaplotypeScore=4.2645;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-0.261;QD=19.49;ReadPosRankSum=2.375;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:2,98:101:99:2001,228,0 chrIX 186485 . A G 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=124;Dels=0.00;FS=5.101;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.422;QD=20.86;ReadPosRankSum=1.704;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2620,300,0 chrIX 186691 . G A 5002.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.16;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5002,552,0 chrIX 186739 . G A 6140.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=22.9064;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.89;SB=-3.296e+03 GT:AD:DP:GQ:PL 1/1:0,254:257:99:6140,675,0 chrIX 187102 . T A 4526.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.3126;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.08;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4526,516,0 chrIX 187360 . A G 5448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=234;Dels=0.00;FS=3.421;HaplotypeScore=15.6981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.825;QD=23.28;ReadPosRankSum=1.643;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:5448,612,0 chrIX 187709 . T G 2532 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.02;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2565,294,0 chrIX 187753 . G A 2064 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.00;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2097,228,0 chrIX 187968 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.269;QD=23.77;ReadPosRankSum=1.629;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3269,363,0 chrIX 188599 . G A 5521.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=11.9468;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.57;SB=-3.215e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5521,618,0 chrIX 188822 . C G 4022.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=21.62;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4022,453,0 chrIX 188845 . G A 4439.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=23.12;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4439,489,0 chrIX 188870 . A T 3677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=180;Dels=0.00;FS=5.825;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-0.279;QD=20.43;ReadPosRankSum=2.916;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:3677,402,0 chrIX 188877 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=3.541;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.040;QD=19.89;ReadPosRankSum=1.712;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3460,399,0 chrIX 189176 . T A 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=196;Dels=0.00;FS=6.223;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;MQRankSum=-0.507;QD=20.59;ReadPosRankSum=2.412;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4036,444,0 chrIX 189194 . C G 3490.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=1.9532;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=17.45;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:3490,393,0 chrIX 189211 . C T 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;MQRankSum=0.055;QD=15.33;ReadPosRankSum=1.459;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:2961,311,0 chrIX 189215 . T C 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;MQRankSum=-0.613;QD=14.99;ReadPosRankSum=1.679;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:2957,333,0 chrIX 189258 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=15.27;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:2735,300,0 chrIX 189332 . C T 3417.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.6942;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.58;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3417,375,0 chrIX 189347 . T C 2928 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=19.39;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2961,348,0 chrIX 189367 . T C 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=4.279;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=-0.277;QD=20.02;ReadPosRankSum=1.709;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3076,342,0 chrIX 189449 . T C 3087 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=22.87;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3120,360,0 chrIX 189777 . A G 2779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.284;QD=22.78;ReadPosRankSum=1.704;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2812,321,0 chrIX 189818 . G A 2766 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.31;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2799,312,0 chrIX 189855 . G A 2022 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=18.38;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2055,231,0 chrIX 189886 . C T 1787 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.23;MQ0=0;QD=17.18;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1820,201,0 chrIX 189900 . A G 1702 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.32;MQ0=0;QD=15.06;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1735,198,0 chrIX 189903 . G T 1763 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;QD=15.20;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1796,198,0 chrIX 189923 . G A 1943 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=15.93;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:1976,216,0 chrIX 190035 . A C 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=144;Dels=0.00;FS=5.249;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-1.275;QD=22.89;ReadPosRankSum=1.708;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3296,372,0 chrIX 190065 . A G 2946 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=18.41;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:2979,345,0 chrIX 190069 . C T 3010 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.81;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3043,339,0 chrIX 190174 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.91;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3450,408,0 chrIX 190373 . C T 3452.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.17;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3452,381,0 chrIX 190433 . G A 2964 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.98;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2997,336,0 chrIX 190515 . T G 2523 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2556,285,0 chrIX 190788 . C A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3481,390,0 chrIX 190828 . G C 3336.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3336,384,0 chrIX 191174 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3421,375,0 chrIX 191287 . G A 3578.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.39;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3578,396,0 chrIX 191327 . A G 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.038;QD=21.80;ReadPosRankSum=1.655;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2998,330,0 chrIX 191573 . T C 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.098;QD=23.11;ReadPosRankSum=2.406;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2668,297,0 chrIX 192137 . C T 2504 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.41;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2537,279,0 chrIX 193262 . A G 4963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=244;Dels=0.00;FS=2.822;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.716;QD=20.34;ReadPosRankSum=2.409;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:2,239:244:99:4963,573,0 chrIX 193298 . T C 4350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.266;DP=192;Dels=0.00;FS=9.005;HaplotypeScore=16.7525;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.633;QD=22.66;ReadPosRankSum=3.414;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:4,185:192:99:4350,486,0 chrIX 193815 . A G 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.653;DP=143;Dels=0.00;FS=5.482;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.468;QD=20.40;ReadPosRankSum=2.922;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:2950,327,0 chrIX 194434 . C T 2491 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.24;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2524,282,0 chrIX 194643 . A G 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=128;Dels=0.00;FS=9.475;HaplotypeScore=7.5716;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.358;QD=22.99;ReadPosRankSum=2.392;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2976,333,0 chrIX 194952 . A G 3741.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.2679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3741,420,0 chrIX 195066 . G A 2731 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.54;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2764,306,0 chrIX 195082 . T C 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.140;DP=127;Dels=0.00;FS=2.999;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.010;QD=20.89;ReadPosRankSum=2.353;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2686,306,0 chrIX 195274 . C G 2531 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.41;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2564,297,0 chrIX 195521 . T A 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.722;QD=21.80;ReadPosRankSum=1.624;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2148,234,0 chrIX 195662 . A T 2686 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6112;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.77;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2719,297,0 chrIX 195700 . C T 2964 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.98;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2997,336,0 chrIX 195861 . A G 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;DP=128;Dels=0.00;FS=11.429;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-2.096;QD=23.62;ReadPosRankSum=2.944;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:3,123:128:99:3057,339,0 chrIX 196152 . C T 3672.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7681;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.84;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3672,405,0 chrIX 197573 . T A 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.100;QD=22.26;ReadPosRankSum=1.642;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2615,297,0 chrIX 197795 . T A 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.5733;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.559;QD=22.68;ReadPosRankSum=1.608;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3208,363,0 chrIX 198063 . C A 2846 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.93;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2879,312,0 chrIX 198073 . A G 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=145;Dels=0.00;FS=6.484;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-0.398;QD=18.77;ReadPosRankSum=2.382;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2755,318,0 chrIX 198329 . C T 4692.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.34;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4692,519,0 chrIX 199233 . C T 4018.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.06;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4018,435,0 chrIX 199422 . T C 3679.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.44;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3679,420,0 chrIX 199445 . T C 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.00;FS=7.707;HaplotypeScore=9.3357;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=1.024;QD=20.18;ReadPosRankSum=2.419;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3289,372,0 chrIX 199623 . T A 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.030;DP=169;Dels=0.00;FS=14.340;HaplotypeScore=7.0208;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=0.099;QD=19.10;ReadPosRankSum=3.355;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:4,165:169:99:3262,363,0 chrIX 199628 . C T 2928 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.0923;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=18.89;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:2961,336,0 chrIX 200296 . C T 2317 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.5229;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=22.07;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2350,255,0 chrIX 200335 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=21.49;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2354,258,0 chrIX 200346 . A G 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=0.534;QD=19.54;ReadPosRankSum=1.667;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2124,243,0 chrIX 200366 . G T 2026 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.5175;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=18.76;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2059,222,0 chrIX 200410 . C T 2060 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.07;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2093,237,0 chrIX 200428 . A C 2062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.534;QD=19.27;ReadPosRankSum=1.700;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2095,240,0 chrIX 200595 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.31;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2955,330,0 chrIX 200781 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.41;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3451,390,0 chrIX 201057 . T C 1992 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.64;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2025,228,0 chrIX 201431 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.84;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3338,375,0 chrIX 201525 . T C 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.755;QD=23.12;ReadPosRankSum=1.710;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3607,417,0 chrIX 201647 . C T 4134.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4134,447,0 chrIX 201914 . C T 4383.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.56;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4383,492,0 chrIX 201938 . A C 4717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=205;Dels=0.00;FS=3.074;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.194;QD=23.01;ReadPosRankSum=1.681;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4717,549,0 chrIX 202086 . G A 2281 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=17.02;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2314,261,0 chrIX 202091 . A G 2115 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=16.65;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2148,249,0 chrIX 202303 . C T 2954 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.6979;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.26;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2987,333,0 chrIX 202381 . A T 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=128;Dels=0.00;FS=7.383;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=1.374;QD=21.53;ReadPosRankSum=2.392;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2789,309,0 chrIX 202393 . G A 2700 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.77;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2733,312,0 chrIX 202695 . T G 5650.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=16.0614;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.04;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:0,282:282:99:5650,668,0 chrIX 202909 . C G 5340.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=18.2068;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.80;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,241:245:99:5340,594,0 chrIX 203744 . G A 4724.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.1776;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.74;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4724,519,0 chrIX 204156 . A T 4114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=3.534;HaplotypeScore=9.7598;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.394;QD=23.24;ReadPosRankSum=1.653;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4114,465,0 chrIX 204360 . A G 4505.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.0791;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.45;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4505,504,0 chrIX 204609 . A T 4448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=191;Dels=0.00;FS=3.033;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.422;QD=23.29;ReadPosRankSum=2.424;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4448,492,0 chrIX 204924 . C T 2433 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.45;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2466,276,0 chrIX 204927 . G A 2642 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.39;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2675,291,0 chrIX 204963 . G T 2510 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=20.57;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2543,282,0 chrIX 205180 . G T 1982 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.33;MQ0=0;QD=23.88;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2015,219,0 chrIX 205184 . G C 1773 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=0;QD=23.96;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1806,204,0 chrIX 205192 . G A 1440 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.27;MQ0=0;QD=21.18;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1473,171,0 chrIX 205590 . A C 712.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.065;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=1;MLEAF=0.500;MQ=17.20;MQ0=48;MQRankSum=-2.216;QD=2.48;ReadPosRankSum=0.147;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,133:287:99:742,0,1349 chrIX 205658 . A C 3646.01 filter AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=11.4096;MLEAC=2;MLEAF=1.00;MQ=18.50;MQ0=76;QD=10.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,347:349:99:3646,426,0 chrIX 206018 . G A 4215.01 filter AC=2;AF=1.00;AN=2;DP=410;Dels=0.00;FS=0.000;HaplotypeScore=17.0819;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=49;QD=10.28;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,408:410:99:4215,474,0 chrIX 206192 . C T 475 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=14.03;MQ0=69;QD=5.16;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:57:508,57,0 chrIX 206400 . G C 154.06 filter AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.38;MQ0=128;QD=1.08;SB=-7.442e-02 GT:AD:DP:GQ:PL 1/1:0,143:143:21:187,21,0 chrIX 206404 . C A 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.698;DP=168;Dels=0.00;FS=8.184;HaplotypeScore=7.2927;MLEAC=1;MLEAF=0.500;MQ=15.13;MQ0=128;MQRankSum=-3.779;QD=0.47;ReadPosRankSum=-1.881;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,80:168:99:109,0,243 chrIX 206430 . C T 889 filter AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=13.97;MQ0=185;QD=3.77;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,236:236:99:922,102,0 chrIX 206702 . T C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=4.53;MQ0=259;QD=0.08;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:6,257:265:6:52,6,0 chrIX 207324 . T C 47.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.770;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.29;MQ0=114;MQRankSum=-0.857;QD=0.35;ReadPosRankSum=2.227;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:3,133:136:9:80,9,0 chrIX 207338 . C A 304 filter AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=9.41;MQ0=153;QD=1.50;SB=-7.338e-03 GT:AD:DP:GQ:PL 1/1:0,201:202:39:337,39,0 chrIX 207537 . T C 70.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.017;DP=67;Dels=0.00;FS=15.441;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.15;MQ0=59;MQRankSum=-0.922;QD=1.05;ReadPosRankSum=2.017;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,63:67:12:103,12,0 chrIX 207567 . A G 3635.01 filter AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=20.31;MQ0=60;QD=15.21;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,233:239:99:3635,408,0 chrIX 207574 . G C 1284.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.966;DP=280;Dels=0.00;FS=42.564;HaplotypeScore=26.0265;MLEAC=1;MLEAF=0.500;MQ=21.19;MQ0=60;MQRankSum=0.842;QD=4.59;ReadPosRankSum=0.989;SB=-2.460e+02 GT:AD:DP:GQ:PL 0/1:162,115:280:99:1314,0,2025 chrIX 207669 . C T 3932.01 filter AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=8.9468;MLEAC=2;MLEAF=1.00;MQ=18.76;MQ0=88;QD=15.36;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,253:256:99:3932,432,0 chrIX 207762 . C G 278.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.35;MQ0=110;MQRankSum=0.587;QD=1.84;ReadPosRankSum=0.673;SB=-9.143e-03 GT:AD:DP:GQ:PL 0/1:60,91:151:29:308,0,29 chrIX 207786 . C T 105.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=11.21;MQ0=120;MQRankSum=-0.237;QD=0.63;ReadPosRankSum=-1.013;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,59:168:99:135,0,287 chrIX 207810 . A G 423 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=11.65;MQ0=148;MQRankSum=-0.955;QD=2.15;ReadPosRankSum=1.662;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:3,194:197:54:456,54,0 chrIX 207837 . C A 130.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=9.12;MQ0=146;MQRankSum=0.067;QD=0.82;ReadPosRankSum=1.179;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:5,153:159:18:163,18,0 chrIX 209019 . G A 11350.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.236;DP=669;Dels=0.00;FS=0.000;HaplotypeScore=18.5186;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=155;MQRankSum=-1.657;QD=16.97;ReadPosRankSum=0.031;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,665:669:99:11350,1308,0 chrIX 209091 . C T 12212.01 filter AC=2;AF=1.00;AN=2;DP=772;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=255;QD=15.82;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,771:772:99:12212,1315,0 chrIX 209166 . C T 14198.01 filter AC=2;AF=1.00;AN=2;DP=914;Dels=0.00;FS=0.000;HaplotypeScore=64.0949;MLEAC=2;MLEAF=1.00;MQ=34.88;MQ0=208;QD=15.53;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,910:914:99:14198,1573,0 chrIX 209259 . A G 6058.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.280;DP=470;Dels=0.00;FS=24.845;HaplotypeScore=17.4872;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=143;MQRankSum=-2.243;QD=12.89;ReadPosRankSum=5.575;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:11,459:470:99:6058,696,0 chrIX 209274 . G A 59.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490;DP=396;Dels=0.00;FS=1.429;HaplotypeScore=28.4432;MLEAC=1;MLEAF=0.500;MQ=23.50;MQ0=197;MQRankSum=-0.845;QD=0.15;ReadPosRankSum=-1.061;SB=-6.401e+01 GT:AD:DP:GQ:PL 0/1:319,77:396:89:89,0,2482 chrIX 209365 . T C 1265 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.203;DP=301;Dels=0.00;FS=41.851;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=16.06;MQ0=217;MQRankSum=-3.287;QD=4.20;ReadPosRankSum=3.266;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:6,295:301:99:1298,150,0 chrIX 209570 . T C 173.03 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.19;MQ0=27;QD=4.22;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:1,40:41:24:206,24,0 chrIX 209841 . T C 976 filter AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=14.00;MQ0=69;QD=6.46;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:1009,117,0 chrIX 209987 . A G 2165.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.754;DP=302;Dels=0.00;FS=12.904;HaplotypeScore=28.5792;MLEAC=1;MLEAF=0.500;MQ=23.22;MQ0=1;MQRankSum=1.274;QD=7.17;ReadPosRankSum=1.512;SB=-6.010e+02 GT:AD:DP:GQ:PL 0/1:156,145:302:99:2195,0,2442 chrIX 210176 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.46;MQ0=93;QD=0.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:96:6:54,6,0 chrIX 211105 . T C 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=170;Dels=0.00;FS=2.776;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.383;QD=22.00;ReadPosRankSum=2.377;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3740,432,0 chrIX 211502 . G A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.24;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:3972,429,0 chrIX 211982 . T C 3899.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.39;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:3899,459,0 chrIX 212110 . A G 2308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.787;QD=20.98;ReadPosRankSum=1.701;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2341,270,0 chrIX 212171 . A G 2474 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=19.95;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2507,288,0 chrIX 212190 . G A 2467 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.22;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2500,273,0 chrIX 212310 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.94;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2403,273,0 chrIX 212523 . A G 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=133;Dels=0.00;FS=7.404;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.192;QD=21.61;ReadPosRankSum=2.376;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2907,339,0 chrIX 212547 . G C 2733 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.38;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2766,309,0 chrIX 212552 . G C 2796 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.15;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2829,324,0 chrIX 212819 . C T 3930.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7671;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.85;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3930,441,0 chrIX 213953 . T C 3720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=174;Dels=0.00;FS=11.347;HaplotypeScore=16.6677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.320;QD=21.38;ReadPosRankSum=2.925;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3720,426,0 chrIX 214842 . T G 2890 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.25;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2923,330,0 chrIX 214890 . A T 2752 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=14.9425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2785,309,0 chrIX 214988 . C T 2704 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.46;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2737,300,0 chrIX 215033 . C T 3078 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.86;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3111,345,0 chrIX 215186 . A G 2791 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=13.6456;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.15;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2824,315,0 chrIX 215783 . G A 3704.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.69;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3704,405,0 chrIX 215993 . C T 3338.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.25;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3338,372,0 chrIX 216106 . A G 4031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=201;Dels=0.00;FS=3.019;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-1.339;QD=20.05;ReadPosRankSum=2.400;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:2,197:201:99:4031,447,0 chrIX 216122 . T C 3596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=192;Dels=0.00;FS=3.033;HaplotypeScore=9.7485;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=1.475;QD=18.73;ReadPosRankSum=2.411;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:2,187:192:99:3596,417,0 chrIX 216326 . A G 3352.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=23.77;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3352,375,0 chrIX 216395 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.803;QD=20.42;ReadPosRankSum=1.711;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3389,378,0 chrIX 216408 . A T 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.2475;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=1.387;QD=20.59;ReadPosRankSum=2.945;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3398,369,0 chrIX 216471 . G C 2255 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.27;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2288,258,0 chrIX 216864 . A G 3688.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.20;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3688,426,0 chrIX 217014 . A G 3786.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.2741;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.14;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3786,426,0 chrIX 217264 . T C 4200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=180;Dels=0.00;FS=12.992;HaplotypeScore=15.2264;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.393;QD=23.33;ReadPosRankSum=3.411;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:4,176:180:99:4200,471,0 chrIX 217329 . A G 4229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=203;Dels=0.00;FS=3.759;HaplotypeScore=5.8459;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.789;QD=20.83;ReadPosRankSum=1.698;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4229,483,0 chrIX 217335 . C T 4350.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.01;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4350,474,0 chrIX 217389 . A G 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=166;Dels=0.00;FS=3.034;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.733;QD=18.74;ReadPosRankSum=2.376;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3144,360,0 chrIX 217459 . T C 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=143;Dels=0.00;FS=8.349;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.095;QD=22.10;ReadPosRankSum=2.381;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3193,357,0 chrIX 217641 . A G 2422 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2455,276,0 chrIX 217682 . A G 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.5045;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.283;QD=21.40;ReadPosRankSum=1.700;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2344,270,0 chrIX 217875 . G A 4236.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4236,456,0 chrIX 218196 . T C 4783.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=18.1392;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.35;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,209:213:99:4783,549,0 chrIX 218229 . A G 4402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=213;Dels=0.00;FS=11.939;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-1.720;QD=20.67;ReadPosRankSum=2.392;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:2,210:213:99:4402,519,0 chrIX 218233 . G A 4261.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.10;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4261,495,0 chrIX 218274 . T C 4655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.613;QD=20.51;ReadPosRankSum=1.671;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4655,534,0 chrIX 218344 . C T 5285.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.98;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5285,585,0 chrIX 218409 . G A 6149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=11.8478;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.182;QD=23.56;ReadPosRankSum=-1.651;SB=-2.971e+03 GT:AD:DP:GQ:PL 1/1:1,257:261:99:6149,684,0 chrIX 218556 . A G 4001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.6942;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.247;QD=20.21;ReadPosRankSum=1.626;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4001,453,0 chrIX 218754 . T C 4421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.5521;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.735;QD=23.03;ReadPosRankSum=1.641;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4421,510,0 chrIX 218780 . A G 4105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=186;Dels=0.00;FS=5.429;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.178;QD=22.07;ReadPosRankSum=1.713;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4105,459,0 chrIX 218801 . A G 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=207;Dels=0.00;FS=4.605;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=0.161;QD=19.67;ReadPosRankSum=1.698;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,204:207:99:4072,465,0 chrIX 219135 . T G 6992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=311;Dels=0.00;FS=7.378;HaplotypeScore=9.7123;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.458;QD=22.48;ReadPosRankSum=2.362;SB=-3.449e+03 GT:AD:DP:GQ:PL 1/1:2,306:311:99:6992,792,0 chrIX 219186 . G A 6731.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=9.5674;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.62;SB=-3.193e+03 GT:AD:DP:GQ:PL 1/1:0,283:285:99:6731,735,0 chrIX 219459 . G T 4627.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=17.4956;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4627,510,0 chrIX 219851 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.48;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3126,339,0 chrIX 220569 . C G 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.911;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.571;QD=20.39;ReadPosRankSum=1.031;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3547,395,0 chrIX 220677 . A T 3658.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.8594;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.45;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3658,408,0 chrIX 220939 . G C 2187 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2220,252,0 chrIX 222311 . A T 4208.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.66;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4208,447,0 chrIX 222379 . G C 3006 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.2916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.17;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3039,342,0 chrIX 222583 . A G 2728 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.9084;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.06;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2761,315,0 chrIX 222742 . T C 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.492;QD=23.32;ReadPosRankSum=1.660;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3404,387,0 chrIX 223114 . A G 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=149;Dels=0.00;FS=6.290;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.673;QD=23.01;ReadPosRankSum=2.416;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3428,384,0 chrIX 223465 . C G 3467.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=20.27;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3467,396,0 chrIX 223474 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=20.56;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3331,387,0 chrIX 223504 . G A 2867 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.4840;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=18.03;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:2900,312,0 chrIX 223668 . A T 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=152;Dels=0.00;FS=3.035;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=-0.675;QD=19.98;ReadPosRankSum=2.352;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3070,339,0 chrIX 223669 . C T 3062 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=20.01;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3095,339,0 chrIX 223691 . C T 3127 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.04;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3160,345,0 chrIX 224249 . T C 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=135;Dels=0.00;FS=3.031;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.266;QD=22.83;ReadPosRankSum=2.395;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3115,354,0 chrIX 224455 . T C 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.085;DP=137;Dels=0.00;FS=9.175;HaplotypeScore=14.2897;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.238;QD=20.80;ReadPosRankSum=3.304;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:4,132:137:99:2883,324,0 chrIX 224632 . T C 2620 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.1559;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.83;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2653,306,0 chrIX 224666 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9311;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.87;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3256,351,0 chrIX 224705 . A G 3383.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.33;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3383,384,0 chrIX 224745 . T C 2939 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.44;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2972,339,0 chrIX 224827 . A G 2279 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.91;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2312,261,0 chrIX 224839 . G T 2390 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.13;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2423,267,0 chrIX 224875 . T C 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=118;Dels=0.00;FS=3.606;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=-1.525;QD=19.19;ReadPosRankSum=1.703;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2297,264,0 chrIX 224905 . T C 2340 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.3829;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=19.50;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2373,267,0 chrIX 224914 . A G 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=122;Dels=0.00;FS=2.850;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-0.313;QD=18.88;ReadPosRankSum=2.329;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2336,264,0 chrIX 224926 . C T 2593 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=21.25;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2626,297,0 chrIX 224976 . G A 1940 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=19.02;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1973,228,0 chrIX 225024 . A G 2197 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.89;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2230,246,0 chrIX 225363 . T G 2373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=106;Dels=0.00;FS=2.879;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.481;QD=22.39;ReadPosRankSum=2.403;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:2,103:106:99:2406,273,0 chrIX 225754 . G A 1565 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1598,180,0 chrIX 225864 . A T 1646 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.84;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1679,186,0 chrIX 225885 . C T 1676 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.19;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1709,192,0 chrIX 226086 . G T 2492 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=17.1050;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=22.45;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2525,273,0 chrIX 226144 . A G 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=1.174;QD=23.09;ReadPosRankSum=1.703;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2781,312,0 chrIX 226283 . G T 2280 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.92;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2313,255,0 chrIX 226398 . T G 918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=5.149;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;MQRankSum=-1.299;QD=12.75;ReadPosRankSum=1.684;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:951,108,0 chrIX 226464 . C T 1424 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=18.26;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1457,162,0 chrIX 226476 . G A 1637 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.42;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1670,186,0 chrIX 226523 . C T 1514 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.63;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1547,174,0 chrIX 226583 . C T 2262 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=20.75;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2295,243,0 chrIX 226591 . A G 2254 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=20.68;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2287,252,0 chrIX 226674 . C T 2389 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.63;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2422,267,0 chrIX 226854 . G A 2875 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.82;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2908,318,0 chrIX 227051 . G A 2282 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=21.33;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2315,252,0 chrIX 227053 . G A 2279 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=21.70;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2312,252,0 chrIX 227151 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.2732;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3110,345,0 chrIX 227301 . A T 2762 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.61;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2795,303,0 chrIX 227309 . C T 2718 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.91;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2751,306,0 chrIX 227464 . T C 3205.99 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6131;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.23;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3239,360,0 chrIX 227732 . A T 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=155;Dels=0.00;FS=2.875;HaplotypeScore=12.5358;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.056;QD=23.37;ReadPosRankSum=2.402;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3622,396,0 chrIX 227953 . G A 4045.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.85;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4045,438,0 chrIX 228015 . G A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.92;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3659,414,0 chrIX 228090 . G T 5261.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.4779;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.18;SB=-2.880e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5261,585,0 chrIX 228239 . T C 4742.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.85;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4742,546,0 chrIX 228423 . A T 2408 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=19.26;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2441,276,0 chrIX 228427 . C A 2590 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.72;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2623,291,0 chrIX 228430 . A C 2566 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=20.37;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2599,288,0 chrIX 228602 . G A 2630 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.74;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2663,306,0 chrIX 228699 . A G 2833 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.30;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2866,336,0 chrIX 228759 . C T 3497.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.56;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3497,384,0 chrIX 228786 . T C 3702.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.85;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3702,420,0 chrIX 228903 . A G 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=134;Dels=0.00;FS=2.693;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.550;QD=20.34;ReadPosRankSum=2.394;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:2,130:134:99:2759,315,0 chrIX 229515 . A G 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-0.933;QD=20.82;ReadPosRankSum=1.703;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2469,279,0 chrIX 229517 . T C 2525 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=21.96;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2558,288,0 chrIX 230147 . T C 2007 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.18;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:2040,225,0 chrIX 230680 . G A 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=162;Dels=0.00;FS=3.260;HaplotypeScore=9.4121;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.699;QD=22.40;ReadPosRankSum=1.495;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3628,405,0 chrIX 230953 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=146;Dels=0.00;FS=3.041;HaplotypeScore=8.0854;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.145;QD=22.94;ReadPosRankSum=2.313;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:2,142:146:99:3349,384,0 chrIX 230993 . C A 3465.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.35;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3465,384,0 chrIX 231138 . A G 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.710;DP=151;Dels=0.00;FS=5.939;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.601;QD=21.95;ReadPosRankSum=2.912;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:3,146:151:99:3314,378,0 chrIX 231300 . T C 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=105;Dels=0.00;FS=3.358;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.233;QD=23.15;ReadPosRankSum=1.699;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2464,273,0 chrIX 231324 . A G 2857 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.04;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2890,330,0 chrIX 231377 . G A 2899 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.76;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2932,321,0 chrIX 231757 . T C 4768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=18.5420;MLEAC=2;MLEAF=1.00;MQ=29.63;MQ0=0;MQRankSum=-1.732;QD=22.81;ReadPosRankSum=1.682;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4768,540,0 chrIX 232188 . T A 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=125;Dels=0.00;FS=2.650;HaplotypeScore=115.1918;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=-0.982;QD=22.14;ReadPosRankSum=2.370;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2800,303,0 chrIX 232253 . A C 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=134;Dels=0.00;FS=4.327;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-0.853;QD=21.92;ReadPosRankSum=1.705;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,129:134:99:2970,339,0 chrIX 232425 . G A 5514.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=22.88;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5514,597,0 chrIX 232438 . A G 4541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=262;Dels=0.00;FS=4.771;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=-1.623;QD=17.33;ReadPosRankSum=1.705;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:1,254:262:99:4541,536,0 chrIX 232454 . T C 5126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=18.2149;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-0.607;QD=17.26;ReadPosRankSum=2.408;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:2,295:297:99:5126,600,0 chrIX 232621 . G C 4311.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=14.3970;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=18.34;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:4311,501,0 chrIX 232759 . A G 4546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.685;DP=227;Dels=0.00;FS=9.259;HaplotypeScore=25.4013;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.112;QD=20.03;ReadPosRankSum=5.046;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:9,216:227:99:4546,510,0 chrIX 232800 . C T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=17.9293;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.24;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3579,393,0 chrIX 233049 . G A 1751 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=15.63;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:1784,207,0 chrIX 233111 . C T 2816 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.7111;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.33;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2849,321,0 chrIX 233343 . G A 2632 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.93;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2665,300,0 chrIX 234371 . A G 3149 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3182,369,0 chrIX 234893 . G T 2862 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7933;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=25.11;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2895,318,0 chrIX 234965 . T C 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.9947;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.058;QD=22.65;ReadPosRankSum=2.359;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:2,134:139:99:3181,363,0 chrIX 235235 . A G 2782 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.57;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2815,330,0 chrIX 235951 . C T 5320.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=6.1852;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.07;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5320,585,0 chrIX 236044 . G A 5173.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=21.4414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5173,561,0 chrIX 236267 . C T 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.109;QD=22.86;ReadPosRankSum=-0.600;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3452,354,0 chrIX 236624 . T C 3882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=17.1756;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.478;QD=21.93;ReadPosRankSum=1.712;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:3882,435,0 chrIX 236759 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.013;DP=156;Dels=0.00;FS=10.860;HaplotypeScore=4.6592;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.184;QD=21.85;ReadPosRankSum=4.069;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:6,150:156:99:3409,396,0 chrIX 237295 . T C 4111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=182;Dels=0.00;FS=3.334;HaplotypeScore=9.8322;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.426;QD=22.59;ReadPosRankSum=1.617;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4111,462,0 chrIX 237441 . G C 3186 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3219,360,0 chrIX 237506 . G A 3805.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.92;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3805,426,0 chrIX 237799 . A C 3727.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.92;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3727,417,0 chrIX 237829 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.18;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3350,381,0 chrIX 238765 . A G 5081.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5081,570,0 chrIX 238849 . G A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0227;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.23;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3396,375,0 chrIX 239011 . A G 4293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=206;Dels=0.00;FS=3.028;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.459;QD=20.84;ReadPosRankSum=2.378;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4293,495,0 chrIX 239176 . A G 4344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.229;QD=22.98;ReadPosRankSum=1.714;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4344,483,0 chrIX 239299 . T C 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=169;Dels=0.00;FS=5.980;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.174;QD=22.24;ReadPosRankSum=2.958;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:3,165:169:99:3758,426,0 chrIX 239431 . A G 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=169;Dels=0.00;FS=6.203;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=-0.763;QD=22.62;ReadPosRankSum=2.421;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3823,429,0 chrIX 239653 . C T 2448 SnpCluster AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1570;MLEAC=2;MLEAF=1.00;MQ=35.18;MQ0=0;QD=14.07;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,170:174:99:2481,279,0 chrIX 239659 . C T 2146 SnpCluster AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.85;MQ0=0;QD=13.25;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2179,249,0 chrIX 239662 . A T 2081 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=3.573;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.76;MQ0=0;MQRankSum=-1.545;QD=14.06;ReadPosRankSum=1.709;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2114,237,0 chrIX 239668 . A G 1475 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.702;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;MQRankSum=-0.658;QD=11.43;ReadPosRankSum=1.652;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:1508,174,0 chrIX 239670 . G T 1516 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.31;MQ0=0;QD=12.33;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1549,171,0 chrIX 239676 . C T 1444 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.45;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1477,162,0 chrIX 239677 . C T 1435 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.37;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1468,162,0 chrIX 239682 . G C 1103 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.03;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1136,135,0 chrIX 239683 . A G 1174 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.74;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1207,138,0 chrIX 239689 . T C 1136 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.96;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1169,129,0 chrIX 239707 . G A 726 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.37;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:81:759,81,0 chrIX 239746 . T C 834 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=4.337;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.395;QD=14.63;ReadPosRankSum=1.672;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:96:867,96,0 chrIX 239749 . C T 918 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.05;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:951,105,0 chrIX 239755 . A G 940 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=13.82;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:973,114,0 chrIX 239767 . G A 1189 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=65.7139;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=13.51;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1222,135,0 chrIX 239773 . G A 1322 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=12.96;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1355,150,0 chrIX 239775 . C T 1332 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.18;MQ0=0;QD=12.93;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1365,156,0 chrIX 239779 . G A 1414 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=0;QD=11.88;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1447,162,0 chrIX 239782 . G A 1554 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.10;MQ0=0;QD=12.24;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:1587,174,0 chrIX 239808 . A G 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=187;Dels=0.00;FS=11.903;HaplotypeScore=11.7558;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;MQRankSum=0.467;QD=14.36;ReadPosRankSum=2.962;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:3,180:187:99:2718,309,0 chrIX 240048 . T C 6228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=279;Dels=0.00;FS=2.932;HaplotypeScore=10.5919;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.752;QD=22.32;ReadPosRankSum=2.379;SB=-3.112e+03 GT:AD:DP:GQ:PL 1/1:2,277:279:99:6228,708,0 chrIX 240405 . G A 6628.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.73;SB=-3.270e+03 GT:AD:DP:GQ:PL 1/1:0,305:305:99:6628,762,0 chrIX 240808 . A G 5341.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.0435;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.43;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5341,591,0 chrIX 241858 . A G 4870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=16.9936;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.125;QD=21.55;ReadPosRankSum=1.743;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:4870,564,0 chrIX 243401 . T C 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.4580;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.687;QD=21.76;ReadPosRankSum=1.710;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3395,390,0 chrIX 243871 . T C 1875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.1392;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=1.913;QD=14.31;ReadPosRankSum=2.349;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:8,122:131:99:1908,213,0 chrIX 243873 . T A 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.562;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.2777;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=2.049;QD=14.28;ReadPosRankSum=0.562;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:1875,210,0 chrIX 244276 . T A 4854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.7662;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.133;QD=22.37;ReadPosRankSum=1.716;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:4854,534,0 chrIX 244519 . A T 4198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.3106;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.567;QD=21.86;ReadPosRankSum=1.640;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4198,456,0 chrIX 246015 . G A 50.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=6.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:9:83,9,0 chrIX 246759 . C A 5504.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=17.5517;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.61;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:5504,609,0 chrIX 247013 . G A 3870.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.11;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3870,420,0 chrIX 247032 . T C 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=3.757;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.942;QD=21.26;ReadPosRankSum=1.692;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:3700,408,0 chrIX 247121 . A G 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=0.166;QD=20.53;ReadPosRankSum=1.661;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3030,342,0 chrIX 247126 . G C 2988 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.19;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3021,339,0 chrIX 247840 . T G 31.08 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=122.7855;MLEAC=1;MLEAF=0.500;MQ=53.78;MQ0=0;MQRankSum=1.653;QD=0.23;ReadPosRankSum=1.283;SB=-1.497e+03 GT:AD:DP:GQ:PL 0/1:1,130:133:15:61,0,15 chrIX 248343 . T C 4920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=224;Dels=0.00;FS=4.189;HaplotypeScore=16.8673;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=0.427;QD=21.96;ReadPosRankSum=1.701;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:4920,567,0 chrIX 248657 . A T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=18.77;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3434,378,0 chrIX 248675 . T A 3728.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.72;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3728,426,0 chrIX 248948 . A C,T 23.11 LowQual;filter AC=1,1;AF=0.500,0.500;AN=2;DP=120;Dels=0.03;FS=0.000;HaplotypeScore=134.6969;MLEAC=1,1;MLEAF=0.500,0.500;MQ=42.78;MQ0=0;QD=0.19;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/2:0,22,95:117:33:81,41,35,39,0,33 chrIX 249005 . G A 3012 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=8.5598;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.77;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3045,333,0 chrIX 249524 . T C 3025 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.3895;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.17;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3058,360,0 chrIX 249665 . A T 2458 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.6854;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.07;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2491,276,0 chrIX 250194 . T C 4082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=174;Dels=0.00;FS=3.021;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.614;QD=23.46;ReadPosRankSum=2.365;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:4082,471,0 chrIX 250587 . C A 3957.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.12;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:3957,456,0 chrIX 250597 . G A 4232.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.35;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4232,462,0 chrIX 250644 . C G 4137.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=19.06;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:4137,471,0 chrIX 250881 . T C 4293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.2289;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-1.662;QD=21.79;ReadPosRankSum=1.714;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4293,498,0 chrIX 251065 . A G 4529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=226;Dels=0.00;FS=6.642;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.038;QD=20.04;ReadPosRankSum=2.417;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:2,223:226:99:4529,522,0 chrIX 253780 . C A 3907.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.2209;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.82;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3907,438,0 chrIX 254261 . T C 6019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.633;DP=255;Dels=0.00;FS=7.610;HaplotypeScore=15.2870;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.404;QD=23.60;ReadPosRankSum=3.719;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:5,248:255:99:6019,669,0 chrIX 254316 . G A 4981.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.61;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4981,546,0 chrIX 254924 . C G 3315.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.7203;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.72;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3315,378,0 chrIX 255654 . A C 4020.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.01;FS=0.000;HaplotypeScore=10.7080;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.50;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4020,459,0 chrIX 256128 . A G 1179 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.83;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1212,135,0 chrIX 256747 . A C 2620 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=21.30;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2653,306,0 chrIX 256921 . G A 3734.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.2298;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.63;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3734,414,0 chrIX 259223 . A C 3571.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=22.32;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3571,399,0 chrIX 259266 . C T 3679.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3679,414,0 chrIX 259701 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3051,336,0 chrIX 260167 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.81;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2770,306,0 chrIX 260232 . C T 2463 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.19;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2496,276,0 chrIX 260247 . A C 2470 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.58;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2503,288,0 chrIX 260291 . G A 2499 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=19.99;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2532,285,0 chrIX 260331 . A G 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=1.039;QD=21.03;ReadPosRankSum=1.672;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2451,273,0 chrIX 260350 . C T 2291 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=19.92;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2324,249,0 chrIX 260376 . C T 2591 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4353;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.56;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2624,291,0 chrIX 260488 . C T 3807.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.5017;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.39;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3807,417,0 chrIX 260930 . A G 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=3.716;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.823;QD=22.59;ReadPosRankSum=1.689;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3614,423,0 chrIX 261061 . C T 2865 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.8545;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.56;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2898,315,0 chrIX 262330 . C G 3101 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.26;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3134,360,0 chrIX 262342 . C A 3364.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.03;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3364,375,0 chrIX 262483 . A G 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=129;Dels=0.00;FS=3.023;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-0.410;QD=21.85;ReadPosRankSum=2.392;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2852,333,0 chrIX 262504 . T C 2901 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.98;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2934,333,0 chrIX 262630 . T A 3426.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.96;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3426,381,0 chrIX 263203 . A G 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.2081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.132;QD=21.21;ReadPosRankSum=1.713;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3902,456,0 chrIX 263455 . T C 2945 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.48;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2978,345,0 chrIX 263605 . T C 3682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=158;Dels=0.00;FS=2.945;HaplotypeScore=12.6066;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.180;QD=23.30;ReadPosRankSum=2.403;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3682,417,0 chrIX 263668 . T C 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=162;Dels=0.00;FS=2.897;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.679;QD=24.56;ReadPosRankSum=2.358;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3978,444,0 chrIX 263753 . C T 2868 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.58;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2901,318,0 chrIX 263911 . A G 4562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=194;Dels=0.00;FS=8.680;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.889;QD=23.52;ReadPosRankSum=2.398;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:2,190:194:99:4562,519,0 chrIX 264571 . A G 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=140;Dels=0.00;FS=2.616;HaplotypeScore=9.6611;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.577;QD=21.12;ReadPosRankSum=2.414;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:2990,342,0 chrIX 265450 . C T 5199.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=16.6910;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.66;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,237:240:99:5199,588,0 chrIX 265562 . A T 4721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=216;Dels=0.00;FS=3.093;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=1.160;QD=21.86;ReadPosRankSum=1.699;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4721,525,0 chrIX 265732 . A C 5131.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.69;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5131,591,0 chrIX 265787 . G A 6030.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=12.8206;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.74;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:0,251:254:99:6030,672,0 chrIX 266255 . G A 2621 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.97;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2654,291,0 chrIX 268466 . G T 4922.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=16.1423;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=19.93;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:4922,555,0 chrIX 268579 . A G 5154.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.31;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:5154,591,0 chrIX 268690 . A G 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=130;Dels=0.00;FS=2.659;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.029;QD=21.19;ReadPosRankSum=2.373;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2788,321,0 chrIX 269580 . T C 5416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=256;Dels=0.00;FS=6.319;HaplotypeScore=21.4264;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.560;QD=21.16;ReadPosRankSum=2.430;SB=-2.936e+03 GT:AD:DP:GQ:PL 1/1:2,250:256:99:5416,624,0 chrIX 269763 . C G 6664.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.89;SB=-3.236e+03 GT:AD:DP:GQ:PL 1/1:0,335:335:99:6664,785,0 chrIX 269976 . T C 8081.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=367;Dels=0.00;FS=6.128;HaplotypeScore=14.7882;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.111;QD=22.02;ReadPosRankSum=2.403;SB=-4.402e+03 GT:AD:DP:GQ:PL 1/1:2,364:367:99:8081,941,0 chrIX 270129 . T C 6069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=310;Dels=0.00;FS=6.409;HaplotypeScore=16.2887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.615;QD=19.58;ReadPosRankSum=2.426;SB=-3.723e+03 GT:AD:DP:GQ:PL 1/1:2,307:310:99:6069,696,0 chrIX 270192 . C T 6358.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-3.464e+03 GT:AD:DP:GQ:PL 1/1:0,313:315:99:6358,705,0 chrIX 270435 . A G 5348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.279;DP=259;Dels=0.00;FS=5.223;HaplotypeScore=15.8516;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.194;QD=20.65;ReadPosRankSum=3.380;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:4,255:259:99:5348,609,0 chrIX 270588 . C A 2945 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.5174;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.12;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2978,342,0 chrIX 270694 . T A 1904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.193;DP=134;Dels=0.01;FS=5.219;HaplotypeScore=119.9371;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-1.626;QD=14.21;ReadPosRankSum=3.392;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:4,129:133:99:1937,237,0 chrIX 270890 . A G 3375.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.5747;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.60;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3375,381,0 chrIX 271273 . T C 2392 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=1.102;QD=19.77;ReadPosRankSum=1.675;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2425,273,0 chrIX 271274 . T C 2303 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=19.19;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2336,270,0 chrIX 271280 . T C 2337 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=130;Dels=0.00;FS=2.815;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-1.107;QD=17.98;ReadPosRankSum=2.412;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2370,270,0 chrIX 271368 . T A 4237.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.3677;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=21.95;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4237,468,0 chrIX 271556 . T C 3442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.281;DP=157;Dels=0.00;FS=9.070;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.440;QD=21.92;ReadPosRankSum=3.348;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:4,153:157:99:3442,399,0 chrIX 271601 . A T 3794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=156;Dels=0.00;FS=6.749;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.032;QD=24.32;ReadPosRankSum=2.371;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3794,417,0 chrIX 272351 . T C 3275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=148;Dels=0.00;FS=2.906;HaplotypeScore=5.3516;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.423;QD=22.13;ReadPosRankSum=2.416;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3275,378,0 chrIX 272989 . T A 2737 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2770,300,0 chrIX 273183 . A C 4169.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.5856;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.42;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4169,471,0 chrIX 274203 . T C 3776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=17.3647;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.237;QD=21.58;ReadPosRankSum=1.712;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3776,429,0 chrIX 274263 . T C 4578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=198;Dels=0.00;FS=2.718;HaplotypeScore=15.7351;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=0.713;QD=23.12;ReadPosRankSum=2.425;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4578,504,0 chrIX 274299 . C A 4913.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.13;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4913,543,0 chrIX 274516 . C T 6202.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=15.3060;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.55;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:0,274:275:99:6202,670,0 chrIX 274686 . C T 7631.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.00;SB=-3.549e+03 GT:AD:DP:GQ:PL 1/1:0,316:318:99:7631,838,0 chrIX 274816 . C T 4553.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.3462;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.00;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4553,495,0 chrIX 274972 . A G 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.924;DP=175;Dels=0.00;FS=2.249;HaplotypeScore=14.7746;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.242;QD=16.71;ReadPosRankSum=4.153;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:6,169:175:99:2957,333,0 chrIX 275372 . A G 4103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=217;Dels=0.00;FS=3.030;HaplotypeScore=15.2098;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.394;QD=18.91;ReadPosRankSum=2.415;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:2,213:217:99:4103,480,0 chrIX 276234 . C T 8617.01 filter AC=2;AF=1.00;AN=2;DP=430;Dels=0.00;FS=0.000;HaplotypeScore=20.4013;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=20.04;SB=-4.561e+03 GT:AD:DP:GQ:PL 1/1:0,428:430:99:8617,993,0 chrIX 277716 . C A 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.6983;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.188;QD=24.16;ReadPosRankSum=1.167;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2256,246,0 chrIX 277755 . C G 2079 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=18.90;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2112,249,0 chrIX 277761 . A C 2083 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=18.43;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2116,249,0 chrIX 278070 . T C 2482 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.96;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2515,291,0 chrIX 278157 . T A 2626 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.07;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2659,300,0 chrIX 278371 . G A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3682,402,0 chrIX 278804 . G A 5387.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=12.2850;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.63;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5387,585,0 chrIX 278878 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=18.29;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3365,375,0 chrIX 278890 . A G 2779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.205;DP=167;Dels=0.00;FS=8.520;HaplotypeScore=6.7516;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-1.097;QD=16.64;ReadPosRankSum=3.374;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:4,161:167:99:2812,315,0 chrIX 278998 . G A 4299.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.99;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4299,462,0 chrIX 279163 . T C 4528.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.75;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4528,510,0 chrIX 279199 . C T 3868.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=15.6945;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.25;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3868,420,0 chrIX 279526 . T C 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=4.156;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.381;QD=22.17;ReadPosRankSum=1.707;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3093,360,0 chrIX 279602 . A G 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.683;DP=151;Dels=0.00;FS=11.337;HaplotypeScore=15.6068;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.899;QD=23.60;ReadPosRankSum=2.939;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:3,146:151:99:3564,402,0 chrIX 279818 . T C 3174 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.69;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3207,351,0 chrIX 280479 . T C 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=117;Dels=0.00;FS=4.172;HaplotypeScore=9.8505;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.286;QD=20.83;ReadPosRankSum=1.702;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:2470,279,0 chrIX 280877 . A G 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=142;Dels=0.00;FS=4.041;HaplotypeScore=12.2636;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.951;QD=21.77;ReadPosRankSum=1.708;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3124,360,0 chrIX 281795 . T C 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=153;Dels=0.00;FS=4.081;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.631;QD=22.34;ReadPosRankSum=1.709;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3418,381,0 chrIX 282530 . C T 2619 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.95;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2652,294,0 chrIX 282578 . A G 2529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=6.958;HaplotypeScore=5.9117;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.013;QD=22.38;ReadPosRankSum=2.406;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2562,291,0 chrIX 282798 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=3.430;HaplotypeScore=8.8639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.536;QD=23.78;ReadPosRankSum=1.708;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3353,378,0 chrIX 283278 . C T 3628.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3628,399,0 chrIX 283758 . T A 2346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=124;Dels=0.00;FS=4.667;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.437;QD=18.92;ReadPosRankSum=1.591;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2379,267,0 chrIX 283774 . T C 2265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.734;DP=112;Dels=0.00;FS=12.121;HaplotypeScore=5.0805;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=0.514;QD=20.22;ReadPosRankSum=2.679;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:3,107:112:99:2298,255,0 chrIX 283803 . A C 2254 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.77;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2287,258,0 chrIX 283818 . G T 2689 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=21.69;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2722,303,0 chrIX 283856 . T C 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=129;Dels=0.00;FS=3.040;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.740;QD=21.21;ReadPosRankSum=2.411;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2769,315,0 chrIX 283914 . G A 2432 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.16;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2465,282,0 chrIX 284086 . C T 2749 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.36;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2782,306,0 chrIX 284092 . A G 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=3.375;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=0.726;QD=19.01;ReadPosRankSum=1.676;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2409,273,0 chrIX 284643 . C T 5489.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=15.2264;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.06;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:1,235:238:99:5489,592,0 chrIX 285554 . A G 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.140;QD=22.40;ReadPosRankSum=1.685;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3337,381,0 chrIX 285783 . G A 3580.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.0737;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.96;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3580,408,0 chrIX 285890 . T G 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.374;DP=164;Dels=0.00;FS=233.541;HaplotypeScore=13.7235;MLEAC=1;MLEAF=0.500;MQ=57.13;MQ0=0;MQRankSum=0.729;QD=0.09;ReadPosRankSum=-4.237;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,47:164:44:44,0,2040 chrIX 285920 . T C 2355 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=17.71;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2388,270,0 chrIX 285923 . C G 2194 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=15.24;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,139:144:99:2227,255,0 chrIX 286108 . G A 5905.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=19.9511;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.34;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,249:253:99:5905,648,0 chrIX 286346 . G A 5187.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=15.5999;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=20.67;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5187,588,0 chrIX 286680 . G A 2805 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.09;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2838,318,0 chrIX 286696 . G A 2872 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.43;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2905,321,0 chrIX 286810 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.24;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3509,381,0 chrIX 286869 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.88;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3018,324,0 chrIX 287126 . T C 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=131;Dels=0.00;FS=2.797;HaplotypeScore=9.7815;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.086;QD=23.63;ReadPosRankSum=2.373;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:2,127:131:99:3128,334,0 chrIX 287156 . A G 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=5.082;HaplotypeScore=14.0004;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-1.159;QD=24.14;ReadPosRankSum=1.708;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3500,396,0 chrIX 287229 . A G 3882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=167;Dels=0.00;FS=6.317;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.114;QD=23.25;ReadPosRankSum=1.670;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3882,435,0 chrIX 287312 . G A 4217.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6574;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.10;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4217,468,0 chrIX 287402 . A G 3793.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.96;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3793,444,0 chrIX 287429 . A G 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.0341;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.412;QD=23.68;ReadPosRankSum=2.420;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3907,435,0 chrIX 287904 . T C 2855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=125;Dels=0.00;FS=5.254;HaplotypeScore=8.6669;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.369;QD=22.84;ReadPosRankSum=2.812;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:3,120:125:99:2888,324,0 chrIX 288084 . C T 3651.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.5184;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.98;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3651,402,0 chrIX 288099 . T A 2915 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=19.56;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2948,324,0 chrIX 288210 . C G 3052 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.6362;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3085,354,0 chrIX 288567 . A G 2223 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.7121;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.03;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2256,258,0 chrIX 288825 . A G 2389 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.25;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2422,288,0 chrIX 289127 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.96;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2968,318,0 chrIX 289162 . T A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.7871;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.34;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3597,405,0 chrIX 289276 . C T 4090.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4090,450,0 chrIX 289409 . G A 3978.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.99;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3978,438,0 chrIX 289540 . G A 4582.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4582,498,0 chrIX 289593 . G T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=16.6130;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.83;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3493,381,0 chrIX 289643 . G A 3196 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.67;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3229,354,0 chrIX 290108 . G C 4413.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4413,498,0 chrIX 290200 . A G 293.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;DP=168;Dels=0.00;FS=5.387;HaplotypeScore=130.3226;MLEAC=1;MLEAF=0.500;MQ=57.63;MQ0=0;MQRankSum=1.428;QD=1.74;ReadPosRankSum=-6.071;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,27:168:99:323,0,140 chrIX 290201 . A G 133.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;DP=166;Dels=0.00;FS=1.722;HaplotypeScore=130.3226;MLEAC=1;MLEAF=0.500;MQ=57.60;MQ0=0;MQRankSum=-1.833;QD=0.80;ReadPosRankSum=5.986;SB=-1.265e+03 GT:AD:DP:GQ:PL 0/1:27,139:166:99:163,0,281 chrIX 290288 . G A 4367.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.9915;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.98;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4367,471,0 chrIX 290346 . G T 3624.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.38;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3624,408,0 chrIX 290536 . C T 3846.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.5967;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.62;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3846,423,0 chrIX 290668 . A G 3221.02 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.91;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3254,369,0 chrIX 290902 . G A 4746.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.85;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4746,522,0 chrIX 291676 . T C 3720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=179;Dels=0.00;FS=6.244;HaplotypeScore=15.0762;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.311;QD=20.78;ReadPosRankSum=2.408;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3720,426,0 chrIX 291981 . C T 3120 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.8051;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.53;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3153,363,0 chrIX 292055 . C T 1891 filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.5402;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=18.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1924,216,0 chrIX 292071 . G A 1572 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;QD=17.66;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1605,180,0 chrIX 292307 . G A 1698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=5.546;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;MQRankSum=0.466;QD=16.33;ReadPosRankSum=1.033;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1731,189,0 chrIX 292345 . G T 1476 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=13.54;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1509,168,0 chrIX 292346 . T C 1461 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=13.40;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1494,171,0 chrIX 292353 . A C 1424 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=5.555;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;MQRankSum=-0.979;QD=12.38;ReadPosRankSum=1.702;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1457,171,0 chrIX 292364 . T C 1492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;MQRankSum=-1.732;QD=12.97;ReadPosRankSum=1.702;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1525,171,0 chrIX 292383 . G T 1693 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=14.35;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1726,192,0 chrIX 292764 . A G 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=163;Dels=0.00;FS=3.146;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.052;QD=21.41;ReadPosRankSum=1.711;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3490,393,0 chrIX 292870 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.181;DP=185;Dels=0.00;FS=5.251;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.320;QD=21.34;ReadPosRankSum=3.383;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:4,178:185:99:3948,447,0 chrIX 292989 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3680,396,0 chrIX 293533 . T C 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.493;QD=22.93;ReadPosRankSum=1.704;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2854,318,0 chrIX 293640 . T A 2828 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=23.76;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2861,321,0 chrIX 293664 . T C 2431 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=21.71;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2464,288,0 chrIX 293679 . A G 2455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=3.090;HaplotypeScore=5.4811;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;MQRankSum=-0.094;QD=22.32;ReadPosRankSum=1.669;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2488,288,0 chrIX 293712 . A G 1825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.968;DP=92;Dels=0.00;FS=2.812;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-0.656;QD=19.84;ReadPosRankSum=2.396;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1858,210,0 chrIX 293812 . C T 2966 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=21.97;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2999,324,0 chrIX 293922 . T C 1442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=-0.589;QD=14.42;ReadPosRankSum=1.697;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1475,171,0 chrIX 294090 . C T 2366 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=23.43;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2399,258,0 chrIX 294743 . T C 2237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.901;QD=22.37;ReadPosRankSum=1.663;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2270,264,0 chrIX 295197 . C A 3449.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.0465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3449,384,0 chrIX 295371 . G A 2458 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.34;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2491,285,0 chrIX 295914 . T C 1275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=60;Dels=0.00;FS=3.729;HaplotypeScore=7.8094;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.263;QD=21.25;ReadPosRankSum=1.674;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1308,153,0 chrIX 295934 . T C 1186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.091;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.577;QD=21.18;ReadPosRankSum=1.668;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:1,53:56:99:1219,116,0 chrIX 295958 . G A 1202 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.03;FS=0.000;HaplotypeScore=6.6657;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=19.08;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1235,132,0 chrIX 296620 . C T 4189.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.80;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4189,465,0 chrIX 296757 . T C 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=173;Dels=0.00;FS=5.867;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.169;QD=21.64;ReadPosRankSum=2.878;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3744,423,0 chrIX 297082 . A C 4878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.7084;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.552;QD=23.01;ReadPosRankSum=0.882;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4878,567,0 chrIX 297196 . T A 3921.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.01;FS=0.000;HaplotypeScore=9.1028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3921,429,0 chrIX 298465 . C A 4022.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4022,441,0 chrIX 298867 . G A 7277.01 PASS AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=18.5907;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=21.59;SB=-4.372e+03 GT:AD:DP:GQ:PL 1/1:0,336:337:99:7277,795,0 chrIX 299044 . T C 4301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=227;Dels=0.00;FS=5.688;HaplotypeScore=6.0951;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=0.092;QD=18.95;ReadPosRankSum=1.717;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4301,492,0 chrIX 299047 . G A 4349.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=6.8837;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=19.16;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4349,483,0 chrIX 299287 . T A 2751 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.13;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2784,303,0 chrIX 299898 . T G 787.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.493;DP=144;Dels=0.00;FS=277.016;HaplotypeScore=9.8616;MLEAC=1;MLEAF=0.500;MQ=57.89;MQ0=0;MQRankSum=1.048;QD=5.47;ReadPosRankSum=-9.447;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,64:144:99:817,0,1267 chrIX 299901 . C G 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.947;DP=106;Dels=0.00;FS=114.829;HaplotypeScore=11.3843;MLEAC=1;MLEAF=0.500;MQ=57.34;MQ0=0;MQRankSum=0.626;QD=0.15;ReadPosRankSum=-6.432;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,23:106:46:46,0,1354 chrIX 300468 . A T 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;DP=103;Dels=0.00;FS=152.659;HaplotypeScore=47.3589;MLEAC=1;MLEAF=0.500;MQ=28.89;MQ0=0;MQRankSum=-0.249;QD=0.36;ReadPosRankSum=3.333;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,57:103:67:67,0,852 chrIX 300472 . T C 125.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.935;DP=106;Dels=0.00;FS=164.627;HaplotypeScore=46.3924;MLEAC=1;MLEAF=0.500;MQ=28.76;MQ0=0;MQRankSum=-0.908;QD=1.18;ReadPosRankSum=4.822;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,60:106:99:155,0,717 chrIX 300475 . T G 973 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.680;DP=104;Dels=0.00;FS=2.471;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;MQRankSum=-0.291;QD=9.36;ReadPosRankSum=2.874;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:3,101:104:99:1006,114,0 chrIX 300482 . G A 939 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=1;QD=9.99;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:972,111,0 chrIX 300483 . G T 374.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.697;DP=95;Dels=0.00;FS=118.193;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=27.27;MQ0=1;MQRankSum=1.853;QD=3.94;ReadPosRankSum=6.201;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:31,64:95:99:404,0,302 chrIX 300505 . G C 603.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.685;DP=152;Dels=0.00;FS=72.261;HaplotypeScore=31.6408;MLEAC=1;MLEAF=0.500;MQ=27.66;MQ0=2;MQRankSum=2.189;QD=3.97;ReadPosRankSum=5.087;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,90:152:99:633,0,563 chrIX 300511 . C A 1050.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.839;DP=163;Dels=0.00;FS=32.463;HaplotypeScore=32.5982;MLEAC=1;MLEAF=0.500;MQ=27.68;MQ0=2;MQRankSum=2.471;QD=6.44;ReadPosRankSum=4.375;SB=-4.830e+02 GT:AD:DP:GQ:PL 0/1:48,115:163:99:1080,0,710 chrIX 300519 . C T 682.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.668;DP=174;Dels=0.00;FS=109.323;HaplotypeScore=28.2540;MLEAC=1;MLEAF=0.500;MQ=27.73;MQ0=2;MQRankSum=1.753;QD=3.92;ReadPosRankSum=2.699;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,96:174:99:712,0,1269 chrIX 300524 . T A 1196.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.634;DP=177;Dels=0.00;FS=42.949;HaplotypeScore=75.1515;MLEAC=1;MLEAF=0.500;MQ=27.71;MQ0=2;MQRankSum=1.115;QD=6.76;ReadPosRankSum=0.437;SB=-6.500e+02 GT:AD:DP:GQ:PL 0/1:51,126:177:99:1226,0,738 chrIX 300532 . T A 658.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.003;DP=180;Dels=0.00;FS=169.047;HaplotypeScore=162.2457;MLEAC=1;MLEAF=0.500;MQ=27.59;MQ0=2;MQRankSum=2.324;QD=3.66;ReadPosRankSum=-0.506;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,99:180:99:688,0,891 chrIX 300536 . T C 652.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.345;DP=178;Dels=0.00;FS=117.892;HaplotypeScore=183.9207;MLEAC=1;MLEAF=0.500;MQ=27.63;MQ0=2;MQRankSum=3.992;QD=3.66;ReadPosRankSum=-2.956;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,98:178:99:682,0,764 chrIX 300582 . T C 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;DP=170;Dels=0.00;FS=21.238;HaplotypeScore=2.9522;MLEAC=1;MLEAF=0.500;MQ=27.18;MQ0=2;MQRankSum=0.162;QD=0.45;ReadPosRankSum=-0.633;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,18:170:99:107,0,1770 chrIX 300591 . C A 1936 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.9628;MLEAC=2;MLEAF=1.00;MQ=27.04;MQ0=0;QD=13.63;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:1969,228,0 chrIX 300610 . T C 1615 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=0;QD=13.80;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1648,189,0 chrIX 300611 . T C 1629 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=0;MQRankSum=-1.732;QD=13.69;ReadPosRankSum=1.674;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1662,195,0 chrIX 300615 . T C 1724 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=134;Dels=0.00;FS=2.904;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=0;MQRankSum=-2.376;QD=12.87;ReadPosRankSum=2.413;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:1757,207,0 chrIX 300617 . T C 1819 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=29.33;MQ0=0;MQRankSum=-1.707;QD=13.28;ReadPosRankSum=1.707;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:1852,219,0 chrIX 300619 . T C 208.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.451;DP=138;Dels=0.00;FS=135.568;HaplotypeScore=5.9181;MLEAC=1;MLEAF=0.500;MQ=29.32;MQ0=0;MQRankSum=1.427;QD=1.51;ReadPosRankSum=2.164;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,29:138:99:238,0,1318 chrIX 300637 . G A 187.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.272;DP=154;Dels=0.00;FS=112.079;HaplotypeScore=4.3723;MLEAC=1;MLEAF=0.500;MQ=31.07;MQ0=0;MQRankSum=2.636;QD=1.21;ReadPosRankSum=0.243;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:123,31:154:99:217,0,1546 chrIX 301883 . A G 4085.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=198;Dels=0.00;FS=3.122;HaplotypeScore=7.5737;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.044;QD=20.63;ReadPosRankSum=1.679;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4085,471,0 chrIX 301893 . T C 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.703;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.3882;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;MQRankSum=-0.127;QD=18.99;ReadPosRankSum=2.137;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:3,203:206:99:3911,441,0 chrIX 301894 . C T 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.3882;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=1.370;QD=19.03;ReadPosRankSum=1.358;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:3939,447,0 chrIX 301970 . T A 4797.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=1.9025;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=20.24;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4797,543,0 chrIX 301993 . T G 4507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=224;Dels=0.00;FS=2.782;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=0.082;QD=20.12;ReadPosRankSum=2.384;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:4507,507,0 chrIX 302007 . C G 3925.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.8596;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=18.34;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,210:214:99:3925,453,0 chrIX 302019 . A G 3547.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=18.28;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3547,414,0 chrIX 302126 . C T 5813.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=23.16;SB=-3.232e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5813,648,0 chrIX 302140 . C T 5633.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=20.63;SB=-3.364e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:5633,639,0 chrIX 302183 . A G 5114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=261;Dels=0.00;FS=2.944;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=-0.269;QD=19.59;ReadPosRankSum=2.402;SB=-2.870e+03 GT:AD:DP:GQ:PL 1/1:2,258:261:99:5114,591,0 chrIX 302223 . C T 4425.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=17.2596;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.80;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4425,483,0 chrIX 302272 . G C 3111 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.4018;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=16.91;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3144,372,0 chrIX 302275 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=18.18;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3454,381,0 chrIX 302298 . A C 4138.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=18.64;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4138,477,0 chrIX 302344 . T A 4619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=243;Dels=0.00;FS=3.271;HaplotypeScore=13.9491;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=1.126;QD=19.01;ReadPosRankSum=1.718;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:4619,528,0 chrIX 302411 . A T 5126.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=15.6318;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.19;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5126,588,0 chrIX 302472 . T C 3480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=205;Dels=0.00;FS=2.685;HaplotypeScore=11.8969;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.419;QD=16.98;ReadPosRankSum=2.352;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:2,200:205:99:3480,381,0 chrIX 302871 . T G 4093.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.1973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4093,453,0 chrIX 303266 . T C 3875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=191;Dels=0.00;FS=4.359;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;MQRankSum=0.462;QD=20.29;ReadPosRankSum=1.696;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3875,447,0 chrIX 303276 . C T 3785.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.41;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3785,432,0 chrIX 303292 . A G 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=187;Dels=0.00;FS=2.765;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-0.453;QD=18.90;ReadPosRankSum=2.371;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3535,402,0 chrIX 303361 . A G 3957.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=17.3594;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.50;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3957,476,0 chrIX 303435 . A G 4608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=192;Dels=0.00;FS=4.060;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.641;QD=24.00;ReadPosRankSum=1.714;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4608,513,0 chrIX 304231 . C G 2726 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2759,315,0 chrIX 304371 . C G 3350.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7007;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.79;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3350,378,0 chrIX 304393 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.26;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3082,351,0 chrIX 304984 . C T 2787 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2554;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.60;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2820,318,0 chrIX 305089 . T C 3657.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.15;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3657,411,0 chrIX 305101 . T G 3342.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.42;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3342,378,0 chrIX 305620 . A G 1706 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1739,195,0 chrIX 305776 . T C 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.567;QD=23.46;ReadPosRankSum=1.667;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2543,288,0 chrIX 305977 . A T 4857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=196;Dels=0.00;FS=4.597;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.566;QD=24.78;ReadPosRankSum=1.697;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4857,531,0 chrIX 306037 . C A 4499.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=17.0776;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4499,501,0 chrIX 306076 . T C 3926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=190;Dels=0.00;FS=4.145;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.917;QD=20.66;ReadPosRankSum=1.714;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:3926,438,0 chrIX 306340 . A G 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.4414;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.466;QD=18.85;ReadPosRankSum=1.708;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2748,321,0 chrIX 306523 . A G 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=131;Dels=0.00;FS=6.535;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.460;QD=23.18;ReadPosRankSum=2.393;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3070,345,0 chrIX 306550 . A G 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.1330;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.631;QD=21.53;ReadPosRankSum=1.707;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3004,339,0 chrIX 306619 . G A 2641 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.96;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2674,303,0 chrIX 306652 . C T 3556.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.19;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3556,393,0 chrIX 306705 . G A 3626.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3626,399,0 chrIX 307120 . A G 2033 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=12.0247;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.54;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2066,234,0 chrIX 307231 . G A 2264 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.58;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2297,252,0 chrIX 307321 . A G 2452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=3.249;HaplotypeScore=8.7032;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.990;QD=21.70;ReadPosRankSum=1.701;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2485,279,0 chrIX 307366 . G A 1907 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.29;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1940,219,0 chrIX 307943 . G A 6461.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=15.3720;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.99;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:6461,697,0 chrIX 307976 . A C 5381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=246;Dels=0.00;FS=8.930;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.534;QD=21.87;ReadPosRankSum=3.418;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:4,242:246:99:5381,603,0 chrIX 308091 . T C 5857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=261;Dels=0.00;FS=3.021;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=2.393;QD=22.44;ReadPosRankSum=2.421;SB=-3.243e+03 GT:AD:DP:GQ:PL 1/1:2,258:261:99:5857,663,0 chrIX 308167 . G A 4063.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.32;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4063,462,0 chrIX 308369 . C T 2569 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3524;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.41;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2602,285,0 chrIX 308383 . C T 2293 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.27;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,115:119:99:2326,264,0 chrIX 308395 . C T 2304 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.04;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2337,267,0 chrIX 310412 . G C 3831.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3831,429,0 chrIX 310545 . T C 1972 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.03;FS=0.000;HaplotypeScore=38.0668;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=17.61;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2005,231,0 chrIX 311139 . T C 3328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-1.581;QD=20.80;ReadPosRankSum=1.710;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3328,393,0 chrIX 311143 . G A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.5409;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.46;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3417,381,0 chrIX 311489 . C T 5233.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.3251;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.23;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5233,567,0 chrIX 311518 . T C 4709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.930;QD=21.60;ReadPosRankSum=1.668;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:1,215:218:99:4709,537,0 chrIX 311545 . A G 4342.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.78;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4342,489,0 chrIX 311953 . T G 3353.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.66;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3353,372,0 chrIX 312013 . C T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.54;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3317,369,0 chrIX 312034 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.58;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3141,351,0 chrIX 312474 . A G 3109 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=21.2944;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.19;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3142,363,0 chrIX 312591 . A T 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.270;QD=21.82;ReadPosRankSum=1.669;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3600,408,0 chrIX 312613 . A T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.21;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3553,390,0 chrIX 312881 . G T 3645.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.22;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3645,411,0 chrIX 313567 . T C 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=215;Dels=0.00;FS=9.783;HaplotypeScore=19.3542;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.379;QD=21.64;ReadPosRankSum=2.958;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:3,212:215:99:4653,528,0 chrIX 313633 . T G 5331.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.59;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5331,618,0 chrIX 313898 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.1626;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.54;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3451,384,0 chrIX 314131 . T C 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.429;QD=21.63;ReadPosRankSum=1.656;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2996,333,0 chrIX 314742 . T C 4898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=219;Dels=0.00;FS=4.266;HaplotypeScore=16.2973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.372;QD=22.37;ReadPosRankSum=1.716;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4898,543,0 chrIX 314872 . G A 3895.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=22.5489;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.76;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3895,441,0 chrIX 315049 . T A 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=160;Dels=0.00;FS=8.278;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-0.591;QD=18.38;ReadPosRankSum=2.296;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:2974,333,0 chrIX 315075 . C G 2525 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0435;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=15.49;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:2558,291,0 chrIX 315079 . A G 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=164;Dels=0.00;FS=2.911;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-0.547;QD=14.29;ReadPosRankSum=2.420;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:2377,273,0 chrIX 315261 . C G 3143 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.53;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3176,363,0 chrIX 315406 . T A 2675 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2708,297,0 chrIX 315641 . T C 3961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=169;Dels=0.00;FS=2.709;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.287;QD=23.44;ReadPosRankSum=2.319;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3961,450,0 chrIX 315783 . C T 3944.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.91;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3944,435,0 chrIX 315806 . T C 4124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=190;Dels=0.00;FS=7.609;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.994;QD=21.71;ReadPosRankSum=2.385;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4124,468,0 chrIX 315923 . T C 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.726;QD=23.64;ReadPosRankSum=1.638;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3522,405,0 chrIX 316019 . T C 4000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=180;Dels=0.00;FS=6.079;HaplotypeScore=4.9893;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.112;QD=22.22;ReadPosRankSum=2.928;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:4000,450,0 chrIX 316046 . A G 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.956;DP=162;Dels=0.00;FS=5.956;HaplotypeScore=2.7675;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=0.156;QD=21.53;ReadPosRankSum=2.856;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:3488,381,0 chrIX 316055 . A C 3380.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=21.81;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3380,378,0 chrIX 316163 . A G 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.300;DP=137;Dels=0.00;FS=5.169;HaplotypeScore=11.9188;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=1;MQRankSum=-0.889;QD=19.85;ReadPosRankSum=3.392;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:4,130:137:99:2752,321,0 chrIX 316207 . C T 3340.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.9868;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=1;QD=21.14;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3340,375,0 chrIX 316244 . A T 107.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=142;Dels=0.01;FS=2.978;HaplotypeScore=123.2227;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=1;MQRankSum=-0.654;QD=0.76;ReadPosRankSum=2.415;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:15:140,15,0 chrIX 316273 . A G 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=124;Dels=0.00;FS=3.118;HaplotypeScore=6.6104;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-0.549;QD=21.08;ReadPosRankSum=1.704;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2647,303,0 chrIX 316351 . A T 1998 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.18;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2031,225,0 chrIX 316369 . T C 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.3094;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.824;QD=19.86;ReadPosRankSum=1.698;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2079,240,0 chrIX 316450 . C T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.38;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3513,399,0 chrIX 316577 . G C 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=139;Dels=0.00;FS=3.105;HaplotypeScore=6.3549;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.461;QD=21.30;ReadPosRankSum=1.632;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2994,333,0 chrIX 316645 . A G 2798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=139;Dels=0.00;FS=2.585;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-2.059;QD=20.13;ReadPosRankSum=2.891;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:3,135:139:99:2831,321,0 chrIX 316715 . A T 4471.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.66;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4471,495,0 chrIX 316929 . G C 3301.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.15;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3301,378,0 chrIX 316998 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.72;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2974,327,0 chrIX 317056 . C T 2866 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.39;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2899,330,0 chrIX 317145 . C T 3019 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.53;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3052,333,0 chrIX 317443 . A G 5772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=15.6700;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=3;MQRankSum=0.431;QD=20.40;ReadPosRankSum=1.720;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:1,277:283:99:5772,651,0 chrIX 318094 . A G 1642 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=25.26;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1675,186,0 chrIX 318119 . G A 1076 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=21.10;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1109,123,0 chrIX 318129 . C T 955 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=19.90;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:988,111,0 chrIX 318187 . G A 2432 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=21.91;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2465,276,0 chrIX 318254 . C T 3651.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.54;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3651,405,0 chrIX 318288 . C T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.03;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3250,351,0 chrIX 318316 . C T 3654.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=20.19;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3654,408,0 chrIX 318344 . A C 2985 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=17.16;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3018,348,0 chrIX 318368 . A G 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=5.954;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;MQRankSum=-1.355;QD=14.91;ReadPosRankSum=1.678;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:2910,333,0 chrIX 318383 . C G 2486 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=0;QD=11.84;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:2519,297,0 chrIX 318392 . A G 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=204;Dels=0.00;FS=4.480;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;MQRankSum=0.514;QD=12.30;ReadPosRankSum=1.681;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:2543,285,0 chrIX 318395 . G A 2461 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.0758;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;QD=11.89;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:2494,276,0 chrIX 318650 . G A 4687.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.50;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4687,522,0 chrIX 318694 . T A 4537.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.92;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4537,507,0 chrIX 319106 . C T 1906 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1939,213,0 chrIX 319209 . T C 2781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=131;Dels=0.00;FS=6.395;HaplotypeScore=8.0733;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.741;QD=21.23;ReadPosRankSum=2.412;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2814,318,0 chrIX 320609 . T C 2503 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.96;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2536,282,0 chrIX 321030 . C T 4045.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.60;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4045,450,0 chrIX 321261 . G A 4167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=16.3423;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.676;QD=22.16;ReadPosRankSum=0.708;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4167,459,0 chrIX 321421 . A G 5450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=228;Dels=0.00;FS=3.088;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.058;QD=23.90;ReadPosRankSum=1.717;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:1,225:228:99:5450,615,0 chrIX 321451 . G A 4946.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.22;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4946,552,0 chrIX 321763 . A G 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.333;QD=21.04;ReadPosRankSum=1.710;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3282,384,0 chrIX 322066 . G A 4187.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.3272;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.52;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4187,471,0 chrIX 322192 . T A 3858.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=21.67;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3858,426,0 chrIX 322202 . T C 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=172;Dels=0.00;FS=7.076;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=-0.740;QD=20.85;ReadPosRankSum=2.421;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3587,405,0 chrIX 322207 . G A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=20.99;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3484,387,0 chrIX 322286 . G A 4134.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.0960;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.97;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4134,447,0 chrIX 322437 . C T 4566.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=23.91;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4566,501,0 chrIX 322476 . C T 4131.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.21;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4131,456,0 chrIX 322620 . T C 3899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=233;Dels=0.00;FS=3.202;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=-0.358;QD=16.73;ReadPosRankSum=1.687;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:3899,450,0 chrIX 322623 . T C 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=0.325;QD=16.95;ReadPosRankSum=1.670;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:1,223:226:99:3830,444,0 chrIX 323202 . C T 4779.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.98;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4779,522,0 chrIX 323320 . G A 4016.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=21.83;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4016,438,0 chrIX 323343 . T C 3375.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=20.96;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3375,384,0 chrIX 323391 . T G 2948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=0.263;QD=18.66;ReadPosRankSum=1.688;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2981,333,0 chrIX 323398 . A G 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=168;Dels=0.00;FS=3.064;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=-0.211;QD=18.38;ReadPosRankSum=1.626;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,163:168:99:3121,348,0 chrIX 323883 . A G 3676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=179;Dels=0.00;FS=2.942;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.587;QD=20.54;ReadPosRankSum=2.367;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3676,426,0 chrIX 323994 . C G 3832.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3832,426,0 chrIX 324390 . T C 4066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=187;Dels=0.00;FS=7.516;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;MQRankSum=-2.108;QD=21.74;ReadPosRankSum=2.423;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4066,456,0 chrIX 324408 . C G 3583.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=20.47;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3583,411,0 chrIX 324424 . C A 3585.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=21.47;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3585,387,0 chrIX 324521 . A C 1690 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=2;QD=17.42;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1723,192,0 chrIX 324536 . G A 1393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=2;MQRankSum=0.748;QD=16.20;ReadPosRankSum=-0.836;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1426,162,0 chrIX 324559 . A G 1371 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;QD=16.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1404,159,0 chrIX 324573 . T C 1344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=16.075;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;MQRankSum=-0.706;QD=16.59;ReadPosRankSum=1.647;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1377,156,0 chrIX 324597 . C T 1456 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=19.41;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1489,162,0 chrIX 324627 . G T 1380 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=23.00;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1413,153,0 chrIX 325047 . C T 2053 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2086,228,0 chrIX 325448 . T A 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=3.456;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=1.035;QD=21.02;ReadPosRankSum=1.690;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3448,393,0 chrIX 325450 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.64;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3722,408,0 chrIX 326249 . A G 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=3.836;HaplotypeScore=16.4963;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.616;QD=22.24;ReadPosRankSum=1.713;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4003,468,0 chrIX 326657 . G A 3000 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.74;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3033,330,0 chrIX 327991 . A G 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=147;Dels=0.00;FS=2.423;HaplotypeScore=128.2426;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.034;QD=20.18;ReadPosRankSum=2.952;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:3,144:147:99:2999,339,0 chrIX 328167 . G A 2248 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.18;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2281,246,0 chrIX 329174 . G A 4086.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=17.2131;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.21;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4086,450,0 chrIX 331018 . C G 2888 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.08;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2921,342,0 chrIX 331210 . A G 2762 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=18.92;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2795,327,0 chrIX 331213 . T G 2653 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=18.30;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2686,309,0 chrIX 331270 . A G 3011 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=18.03;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3044,360,0 chrIX 331963 . C T 3281.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3281,354,0 chrIX 332459 . C T 2974 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3007,327,0 chrIX 332503 . C G 3298.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.07;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3298,372,0 chrIX 332870 . C A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.0504;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=21.15;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3384,372,0 chrIX 333050 . G T 4539.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.76;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4539,501,0 chrIX 333345 . T C 3457.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.8510;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.30;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3457,399,0 chrIX 334200 . A T 3933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.6529;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;MQRankSum=0.072;QD=17.72;ReadPosRankSum=1.684;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:3933,441,0 chrIX 334381 . G A 959.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.792;DP=232;Dels=0.00;FS=7.111;HaplotypeScore=66.8389;MLEAC=1;MLEAF=0.500;MQ=35.45;MQ0=0;MQRankSum=1.709;QD=4.13;ReadPosRankSum=8.575;SB=-1.754e+03 GT:AD:DP:GQ:PL 0/1:70,161:232:99:989,0,109 chrIX 334382 . C A 948.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.872;DP=233;Dels=0.00;FS=6.965;HaplotypeScore=67.6276;MLEAC=1;MLEAF=0.500;MQ=35.43;MQ0=0;MQRankSum=1.250;QD=4.07;ReadPosRankSum=7.977;SB=-1.760e+03 GT:AD:DP:GQ:PL 0/1:71,161:233:99:978,0,161 chrIX 334383 . T C,G 1216.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.920;DP=237;Dels=0.00;FS=9.603;HaplotypeScore=65.9653;MLEAC=1,1;MLEAF=0.500,0.500;MQ=35.98;MQ0=0;MQRankSum=-2.784;QD=5.13;ReadPosRankSum=2.970;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/2:3,73,161:237:99:1276,996,960,280,0,148 chrIX 334384 . T G 946.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;DP=237;Dels=0.00;FS=4.808;HaplotypeScore=69.9389;MLEAC=1;MLEAF=0.500;MQ=35.98;MQ0=0;MQRankSum=1.358;QD=3.99;ReadPosRankSum=6.774;SB=-1.731e+03 GT:AD:DP:GQ:PL 0/1:77,160:237:99:976,0,169 chrIX 334640 . T C 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=131;Dels=0.00;FS=2.910;HaplotypeScore=13.6085;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=1.887;QD=22.84;ReadPosRankSum=2.375;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3025,348,0 chrIX 334696 . T C 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.4454;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-1.027;QD=22.04;ReadPosRankSum=1.701;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2545,291,0 chrIX 334734 . C A 2585 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=14.9024;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.48;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2618,282,0 chrIX 334877 . A G 4632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=194;Dels=0.00;FS=4.047;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-1.624;QD=23.88;ReadPosRankSum=1.714;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4632,516,0 chrIX 334906 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=159;Dels=0.00;FS=7.037;HaplotypeScore=6.5547;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-1.522;QD=23.09;ReadPosRankSum=2.403;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3671,405,0 chrIX 334919 . T C 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=141;Dels=0.00;FS=2.978;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-0.968;QD=20.65;ReadPosRankSum=2.397;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2944,336,0 chrIX 335001 . G A 3302.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=21.17;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3302,369,0 chrIX 335022 . T A 3697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=199;Dels=0.00;FS=3.904;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;MQRankSum=0.688;QD=18.58;ReadPosRankSum=1.715;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:3697,405,0 chrIX 335035 . C A 3578.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;QD=16.96;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:3578,396,0 chrIX 335052 . A G 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=205;Dels=0.00;FS=2.909;HaplotypeScore=7.6642;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=0.869;QD=16.62;ReadPosRankSum=1.270;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:2,200:205:99:3407,396,0 chrIX 335079 . C G 3502.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=16.76;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:3502,399,0 chrIX 336156 . T C 3023 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=19.76;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3056,342,0 chrIX 336223 . T C 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=156;Dels=0.00;FS=11.561;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;MQRankSum=1.216;QD=19.78;ReadPosRankSum=2.876;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:3,151:156:99:3118,345,0 chrIX 336595 . T G 1458 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1491,177,0 chrIX 336673 . A C 1610 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.3404;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.68;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1643,189,0 chrIX 336731 . T G 93.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;MQRankSum=-1.093;QD=0.72;ReadPosRankSum=1.705;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:15:126,15,0 chrIX 336869 . A G 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=3.150;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.027;QD=20.21;ReadPosRankSum=1.677;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2600,294,0 chrIX 337030 . G A 3901.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.8860;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=24.08;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3901,426,0 chrIX 337083 . A T 2643 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.49;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2676,294,0 chrIX 337127 . C G 2299 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.54;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2332,270,0 chrIX 337182 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.0609;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.39;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2887,327,0 chrIX 337219 . T G 2983 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=138.9994;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=19.50;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3016,342,0 chrIX 337321 . C A 2310 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.5848;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=16.04;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2343,267,0 chrIX 337390 . G A 4565.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.01;FS=0.000;HaplotypeScore=22.2655;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=23.06;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4565,501,0 chrIX 337425 . G C 4516.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=16.7412;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.58;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4516,522,0 chrIX 337478 . G A 3706.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=22.19;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3706,417,0 chrIX 337519 . C T 4305.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=22.90;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4305,468,0 chrIX 337589 . C A 5452.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.30;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5452,603,0 chrIX 337621 . C T 4606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.612;DP=202;Dels=0.00;FS=5.250;HaplotypeScore=14.0279;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.646;QD=22.80;ReadPosRankSum=0.629;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4606,507,0 chrIX 337799 . C G 2822 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2855,321,0 chrIX 337905 . T A 2654 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=20.42;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2687,291,0 chrIX 337915 . A T 2711 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=19.64;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2744,306,0 chrIX 337948 . T C 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;MQRankSum=-0.035;QD=17.31;ReadPosRankSum=1.686;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:2647,306,0 chrIX 337953 . A G 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.586;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=-1.460;QD=17.64;ReadPosRankSum=1.709;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:2750,315,0 chrIX 338050 . A G 3186 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.10;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3219,360,0 chrIX 338818 . A G 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=147;Dels=0.00;FS=2.915;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.259;QD=21.12;ReadPosRankSum=2.399;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3138,360,0 chrIX 339179 . T C 2570 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=22.16;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2603,297,0 chrIX 339301 . A G 4449.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.0313;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=24.05;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4449,510,0 chrIX 339428 . C T 3307.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.47;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3307,369,0 chrIX 339595 . T C 4278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=201;Dels=0.00;FS=6.676;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.853;QD=21.28;ReadPosRankSum=2.376;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4278,495,0 chrIX 340799 . G A 4438.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4438,489,0 chrIX 340927 . A C 3201 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3234,357,0 chrIX 341514 . T G 1885 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=20.49;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1918,213,0 chrIX 341515 . G C 1878 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=20.19;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1911,213,0 chrIX 341595 . C A 1949 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.18;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1982,222,0 chrIX 341662 . C T 3021 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=23.79;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3054,339,0 chrIX 341686 . T C 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-1.172;QD=21.68;ReadPosRankSum=1.707;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2982,339,0 chrIX 341700 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=21.28;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3076,342,0 chrIX 341777 . A C 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=4.733;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=1.456;QD=22.26;ReadPosRankSum=1.701;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2571,294,0 chrIX 341828 . G A 2779 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.59;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2812,318,0 chrIX 341838 . A G 2812 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.7669;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.97;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2845,321,0 chrIX 341985 . A G 2461 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=22.37;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2494,282,0 chrIX 341987 . C A 2546 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=23.15;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2579,282,0 chrIX 341988 . G T 2594 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=22.96;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2627,285,0 chrIX 342151 . C T 2712 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.98;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2745,303,0 chrIX 342194 . C T 2313 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.03;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2346,261,0 chrIX 342466 . A G 2871 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.025;DP=137;Dels=0.00;FS=23.937;HaplotypeScore=5.5314;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=1.178;QD=20.96;ReadPosRankSum=3.837;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:7,130:137:99:2904,327,0 chrIX 342470 . T A 2768 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=1.843;QD=20.20;ReadPosRankSum=2.873;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:5,132:137:99:2801,309,0 chrIX 342473 . C T 3040 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.11;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3073,339,0 chrIX 342478 . G A 3074 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.80;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3107,339,0 chrIX 343172 . T C 4623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=219;Dels=0.00;FS=2.893;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-1.407;QD=21.11;ReadPosRankSum=2.405;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:4623,522,0 chrIX 343174 . A G 4533.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=2.3838;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.51;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:4533,507,0 chrIX 343874 . T C 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.552;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.203;QD=23.56;ReadPosRankSum=1.660;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3416,384,0 chrIX 344026 . G A 5444.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=24.52;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5444,594,0 chrIX 344070 . G A 5423.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=4.2752;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=23.18;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5423,591,0 chrIX 344094 . C T 5705.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=14.5594;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.69;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:5705,636,0 chrIX 344274 . G T 5556.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=8.0463;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.28;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:0,271:274:99:5556,618,0 chrIX 344292 . T G 5040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.973;DP=263;Dels=0.00;FS=12.320;HaplotypeScore=4.2735;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=0.688;QD=19.16;ReadPosRankSum=2.958;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:3,258:263:99:5040,573,0 chrIX 344547 . C T 3705.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=20.70;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3705,411,0 chrIX 344556 . G A 3096 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=19.47;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3129,339,0 chrIX 344691 . C T 4111.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=17.1492;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.19;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,190:194:99:4111,453,0 chrIX 344740 . C A 4100.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.0323;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=20.92;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4100,447,0 chrIX 344757 . G A 4155.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=21.87;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4155,459,0 chrIX 345192 . A C 3207 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.1223;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.67;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3240,369,0 chrIX 345247 . A C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=3.149;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.449;QD=21.06;ReadPosRankSum=1.689;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3349,393,0 chrIX 345325 . C T 3709.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3709,411,0 chrIX 345474 . T C 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=152;Dels=0.00;FS=6.895;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.043;QD=22.50;ReadPosRankSum=2.385;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3420,390,0 chrIX 345656 . A C 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=147;Dels=0.00;FS=6.544;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.288;QD=20.79;ReadPosRankSum=2.416;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3089,357,0 chrIX 345745 . T C 3070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.455;QD=18.95;ReadPosRankSum=1.602;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3103,348,0 chrIX 345823 . A G 2725 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.46;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2758,312,0 chrIX 345871 . T C 3664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=6.100;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-1.094;QD=22.07;ReadPosRankSum=2.375;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3664,405,0 chrIX 345893 . C T 3905.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.4008;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.94;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3905,429,0 chrIX 345992 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3508,405,0 chrIX 346155 . A T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.4964;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.86;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3250,366,0 chrIX 346531 . G T 3058 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.71;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3091,339,0 chrIX 346599 . G A 2410 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.31;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2443,270,0 chrIX 346744 . G A 2450 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.11;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2483,270,0 chrIX 346766 . A C 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=113;Dels=0.00;FS=4.364;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=1.299;QD=21.40;ReadPosRankSum=1.701;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2451,285,0 chrIX 346835 . A G 2141 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.39;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2174,243,0 chrIX 346859 . A G 1730 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=18.21;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1763,198,0 chrIX 346906 . G A 2482 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.77;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2515,282,0 chrIX 346999 . C G 3443.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.11;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3443,402,0 chrIX 347117 . A G 3068 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.60;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3101,348,0 chrIX 347270 . A T 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.331;QD=20.39;ReadPosRankSum=2.397;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1929,213,0 chrIX 347702 . A G 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=126;Dels=0.00;FS=2.913;HaplotypeScore=6.7791;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;MQRankSum=0.634;QD=23.05;ReadPosRankSum=2.372;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2937,330,0 chrIX 348431 . T C 4987.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.4227;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.41;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4987,555,0 chrIX 348722 . T C 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=3.354;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=-1.671;QD=21.08;ReadPosRankSum=1.692;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3605,402,0 chrIX 348726 . C T 3567.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=21.36;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3567,390,0 chrIX 348738 . C T 3274.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=21.12;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3274,366,0 chrIX 348957 . A G 2970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=150;Dels=0.00;FS=3.536;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=-0.686;QD=19.80;ReadPosRankSum=1.662;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3003,333,0 chrIX 348958 . T C 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=148;Dels=0.00;FS=5.867;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=-0.317;QD=20.38;ReadPosRankSum=2.924;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:3,143:148:99:3049,339,0 chrIX 349419 . C T 4040.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4040,441,0 chrIX 349460 . T C 2973 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.41;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3006,345,0 chrIX 349499 . C T 2579 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.67;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2612,288,0 chrIX 349907 . C T 1268 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.38;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1301,150,0 chrIX 349963 . T A 792 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=16.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:90:825,90,0 chrIX 350005 . A G 326 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.261;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.69;MQ0=0;MQRankSum=-1.261;QD=14.82;ReadPosRankSum=1.576;SB=-7.050e-03 GT:AD:DP:GQ:PL 1/1:1,21:22:42:359,42,0 chrIX 350012 . C T 319 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.13;MQ0=0;QD=16.79;SB=-7.578e-03 GT:AD:DP:GQ:PL 1/1:0,18:19:39:352,39,0 chrIX 350021 . G A 185.03 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=6.9280;MLEAC=2;MLEAF=1.00;MQ=33.20;MQ0=0;QD=14.23;SB=-3.878e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:24:218,24,0 chrIX 350044 . T C 230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.731;DP=19;Dels=0.00;FS=2.754;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-1.342;QD=12.11;ReadPosRankSum=3.194;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:5,14:19:30:263,30,0 chrIX 350094 . A T 1212 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.76;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1245,141,0 chrIX 350135 . A G 1871 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1904,219,0 chrIX 350183 . T A 1327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=1.029;QD=18.96;ReadPosRankSum=1.531;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1360,159,0 chrIX 350189 . G C 1360 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.92;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1393,159,0 chrIX 350262 . C A 1492 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.61;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1525,171,0 chrIX 350470 . G A 1435 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.66;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1468,162,0 chrIX 350513 . A G 1366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.531;QD=19.51;ReadPosRankSum=1.682;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1399,162,0 chrIX 350705 . C G 2465 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.04;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2498,285,0 chrIX 350729 . T C 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8836;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=1.371;QD=22.85;ReadPosRankSum=1.702;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2684,303,0 chrIX 351040 . C T 2859 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.34;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2892,312,0 chrIX 351362 . C T 2863 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.53;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2896,318,0 chrIX 351734 . G T 2298 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.89;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2331,261,0 chrIX 351895 . A G 3681.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.90;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3681,420,0 chrIX 351996 . G C 3104 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.71;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3137,357,0 chrIX 352871 . A G 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=11.5608;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.884;QD=22.14;ReadPosRankSum=1.661;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3277,375,0 chrIX 353168 . A G 4637.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=17.2274;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.98;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:4637,543,0 chrIX 353530 . T C 2744 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.31;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2777,315,0 chrIX 353978 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3339,378,0 chrIX 354377 . A C 3096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=0.073;QD=21.65;ReadPosRankSum=1.708;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3129,351,0 chrIX 354380 . T C 2977 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.11;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3010,339,0 chrIX 354832 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3458,378,0 chrIX 354945 . T C 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=155;Dels=0.00;FS=3.614;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.327;QD=21.99;ReadPosRankSum=1.710;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3408,390,0 chrIX 355241 . T A 2318 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9110;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.16;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2351,267,0 chrIX 355578 . T G 1260 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1293,150,0 chrIX 355640 . A C 329 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;MQRankSum=1.369;QD=17.32;ReadPosRankSum=1.552;SB=-7.475e-03 GT:AD:DP:GQ:PL 1/1:1,18:19:39:362,39,0 chrIX 355716 . A T 168.06 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:21:201,21,0 chrIX 356037 . C T 2357 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.57;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2390,258,0 chrIX 356143 . T C 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=3.147;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.375;QD=20.97;ReadPosRankSum=1.696;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2067,234,0 chrIX 356686 . G A 4006.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.8757;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4006,459,0 chrIX 357041 . T A 2970 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=22.16;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3003,333,0 chrIX 357174 . G A 2232 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=20.48;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2265,252,0 chrIX 357181 . A G 2107 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=19.51;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2140,243,0 chrIX 357197 . G T 2186 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=19.35;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2219,255,0 chrIX 357298 . G A 1169 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=18.27;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1202,132,0 chrIX 357302 . C T 1208 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=18.58;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1241,138,0 chrIX 357800 . C T 3292.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=16.7652;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.52;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3292,360,0 chrIX 357966 . T A 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=124;Dels=0.00;FS=3.621;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.880;QD=21.25;ReadPosRankSum=1.647;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2668,294,0 chrIX 358029 . C A 2687 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2720,306,0 chrIX 358276 . T C 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=143;Dels=0.00;FS=2.614;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.090;QD=22.24;ReadPosRankSum=2.397;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:3214,363,0 chrIX 358450 . A G 4360.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4360,501,0 chrIX 358570 . G A 2878 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=18.33;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2911,330,0 chrIX 358894 . C T 3338.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.7576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.87;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3338,372,0 chrIX 358980 . C T 2571 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=17.98;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2604,294,0 chrIX 358984 . T A 2531 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=18.61;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2564,288,0 chrIX 359077 . G T 2098 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5112;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.57;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2131,237,0 chrIX 359494 . C T 2862 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.36;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2895,327,0 chrIX 359599 . A G 4282.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.63;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4282,509,0 chrIX 359744 . G T 2450 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.44;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2483,282,0 chrIX 360413 . C A 4880.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=17.7652;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.02;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4880,534,0 chrIX 360493 . C T 4316.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.1606;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.96;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4316,486,0 chrIX 360682 . G A 3969.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.8241;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.55;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3969,429,0 chrIX 360722 . T G 4044.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.59;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4044,462,0 chrIX 360812 . T C 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.701;DP=186;Dels=0.00;FS=5.483;HaplotypeScore=14.4230;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.125;QD=21.69;ReadPosRankSum=2.962;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:3,182:186:99:4035,459,0 chrIX 360959 . C T 4734.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.1918;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.03;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4734,522,0 chrIX 361093 . G A 5175.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.8506;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.12;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5175,570,0 chrIX 361181 . A G 4893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=226;Dels=0.00;FS=2.967;HaplotypeScore=17.6588;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.631;QD=21.65;ReadPosRankSum=2.428;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:2,223:226:99:4893,564,0 chrIX 361254 . G C 5299.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=12.8937;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.74;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,229:233:99:5299,597,0 chrIX 361353 . G A 4385.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=19.23;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4385,483,0 chrIX 361360 . C A 4063.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=17.36;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:4063,453,0 chrIX 361396 . T C 4667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.760;DP=257;Dels=0.00;FS=5.457;HaplotypeScore=13.8191;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=-1.098;QD=18.16;ReadPosRankSum=2.973;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:3,252:257:99:4667,531,0 chrIX 361497 . A G 5576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.577;QD=22.48;ReadPosRankSum=1.676;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:1,245:248:99:5576,651,0 chrIX 361543 . A C 5296.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=10.3011;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.54;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5296,623,0 chrIX 361862 . G A 4174.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.4469;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.81;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4174,459,0 chrIX 361957 . G T 4178.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=23.87;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4178,471,0 chrIX 362047 . C T 3807.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.53;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3807,420,0 chrIX 362340 . C A 3070 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.62;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3103,345,0 chrIX 362381 . A C 3922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.417;QD=23.77;ReadPosRankSum=1.711;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3922,444,0 chrIX 362503 . C T 2767 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.68;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2800,300,0 chrIX 362523 . G A 2676 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.07;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2709,300,0 chrIX 362877 . G A 2393 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=12.7565;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.94;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2426,267,0 chrIX 363030 . A G 448 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.92;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:54:481,54,0 chrIX 363644 . A G 6199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=21.0068;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=2.289;QD=21.01;ReadPosRankSum=2.454;SB=-3.467e+03 GT:AD:DP:GQ:PL 1/1:3,290:295:99:6199,699,0 chrIX 363751 . C T 5422.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=10.6353;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.31;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5422,618,0 chrIX 363854 . T C 4697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=210;Dels=0.00;FS=4.649;HaplotypeScore=9.9189;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.726;QD=22.37;ReadPosRankSum=1.716;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4697,525,0 chrIX 364352 . C T 3014 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.01;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3047,330,0 chrIX 364487 . G A 2122 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2155,237,0 chrIX 364631 . T C 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.4770;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=1.379;QD=24.29;ReadPosRankSum=1.700;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2681,300,0 chrIX 364849 . A G 2445 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=18.95;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2478,282,0 chrIX 365116 . T C 2872 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=23.74;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2905,324,0 chrIX 366567 . C T 3038 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6689;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=23.02;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3071,339,0 chrIX 366585 . C T 2421 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=20.52;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2454,267,0 chrIX 366603 . C T 2171 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.21;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,109:113:99:2204,237,0 chrIX 367155 . A G 3732.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.0128;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.97;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3732,441,0 chrIX 367284 . T C 3777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=176;Dels=0.00;FS=3.832;HaplotypeScore=14.9846;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.438;QD=21.46;ReadPosRankSum=1.712;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3777,429,0 chrIX 367600 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=149;Dels=0.00;FS=6.061;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.669;QD=22.83;ReadPosRankSum=2.885;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3401,390,0 chrIX 367896 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.2006;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.71;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2440,264,0 chrIX 367929 . T A 2085 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.66;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2118,231,0 chrIX 368031 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2207,240,0 chrIX 368158 . T C 1714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-0.983;QD=18.23;ReadPosRankSum=2.397;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1747,201,0 chrIX 368159 . T C 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.783;QD=17.61;ReadPosRankSum=2.398;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1724,198,0 chrIX 368784 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.56;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3137,351,0 chrIX 369078 . T C 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=-1.117;QD=19.72;ReadPosRankSum=1.713;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3668,417,0 chrIX 369090 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-1.586;QD=18.91;ReadPosRankSum=1.696;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:3612,408,0 chrIX 369093 . T C 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=200;Dels=0.00;FS=6.065;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=-0.101;QD=17.48;ReadPosRankSum=2.814;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:3496,405,0 chrIX 369135 . G A 4194.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.2038;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=19.06;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4194,465,0 chrIX 369297 . C A 5233.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=14.5525;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.05;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:0,221:227:99:5233,588,0 chrIX 369452 . C A 6738.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.96;SB=-2.880e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:6738,730,0 chrIX 369589 . G A 5731.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=18.0651;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.74;SB=-2.823e+03 GT:AD:DP:GQ:PL 1/1:0,248:252:99:5731,642,0 chrIX 369671 . C T 5942.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=25.5026;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.22;SB=-3.428e+03 GT:AD:DP:GQ:PL 1/1:0,278:280:99:5942,657,0 chrIX 370023 . A T 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=168;Dels=0.00;FS=6.205;HaplotypeScore=8.9298;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=0.419;QD=21.88;ReadPosRankSum=2.361;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3675,414,0 chrIX 370356 . A G 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=119;Dels=0.00;FS=6.130;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.137;QD=23.57;ReadPosRankSum=2.941;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2838,324,0 chrIX 370388 . G A 2436 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=25.11;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2469,264,0 chrIX 370657 . T C 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.776;QD=22.46;ReadPosRankSum=1.706;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3043,348,0 chrIX 371225 . C A 4240.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4240,465,0 chrIX 371543 . G A 3751.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3751,411,0 chrIX 371627 . T C 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=3.128;HaplotypeScore=8.8201;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.254;QD=22.67;ReadPosRankSum=1.640;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3400,387,0 chrIX 371714 . G A 3933.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3933,429,0 chrIX 371807 . G A 2788 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.67;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2821,303,0 chrIX 371957 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.84;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2700,294,0 chrIX 372035 . T C 3116 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.64;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3149,354,0 chrIX 372078 . C A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.8775;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3559,387,0 chrIX 372203 . C T 3973.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.9585;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.97;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3973,441,0 chrIX 372251 . T C 3225.28 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.03;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3258,378,0 chrIX 372446 . G A 2967 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.6680;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.89;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3000,339,0 chrIX 372481 . A G 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-1.199;QD=17.90;ReadPosRankSum=1.708;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2593,277,0 chrIX 372491 . T G 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-0.403;QD=15.32;ReadPosRankSum=1.661;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:2300,270,0 chrIX 372678 . C A 3660.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.46;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3660,393,0 chrIX 373063 . A G 1004 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1180;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=15.45;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1037,117,0 chrIX 373113 . A G 1879 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=19.37;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1912,225,0 chrIX 373350 . C T 4080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.550;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.3130;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.632;QD=23.72;ReadPosRankSum=-1.386;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4080,427,0 chrIX 373695 . A C 4409.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.27;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4409,507,0 chrIX 373728 . C G 3591.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.8970;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.52;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,179:184:99:3591,414,0 chrIX 373876 . G A 3693.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.0632;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.52;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3693,414,0 chrIX 373971 . A G 2830 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.28;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2863,330,0 chrIX 374268 . T C 2241 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.34;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2274,267,0 chrIX 374287 . G C 2352 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.19;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2385,267,0 chrIX 374496 . C G 3384.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.17;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3384,387,0 chrIX 374861 . C T 3378.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.3743;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.52;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3378,372,0 chrIX 374898 . C G 1221.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;DP=157;Dels=0.00;FS=0.591;HaplotypeScore=7.0869;MLEAC=1;MLEAF=0.500;MQ=59.44;MQ0=0;MQRankSum=-0.768;QD=7.78;ReadPosRankSum=0.385;SB=-6.430e+02 GT:AD:DP:GQ:PL 0/1:81,74:157:99:1251,0,1309 chrIX 374992 . C A 3416.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6093;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.93;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3416,387,0 chrIX 375017 . G A 2957 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.74;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2990,342,0 chrIX 375200 . T C 2692 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=21.37;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2725,315,0 chrIX 375219 . T C 2599 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=21.66;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2632,297,0 chrIX 375220 . G C 2538 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.98;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2571,294,0 chrIX 375279 . C A 2110 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.2120;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.03;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2143,240,0 chrIX 376391 . A G 3793.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.9132;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.31;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3793,423,0 chrIX 376534 . T C 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.8766;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.598;QD=21.81;ReadPosRankSum=1.690;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3643,426,0 chrIX 376864 . T A 4317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=19.1297;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.314;QD=22.14;ReadPosRankSum=1.696;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4317,489,0 chrIX 377556 . C T 3485.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.8315;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.80;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3485,393,0 chrIX 377824 . G A 3841.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.6395;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.34;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3841,435,0 chrIX 378238 . C T 3976.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.85;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3976,432,0 chrIX 378749 . G A 6240.01 PASS AC=2;AF=1.00;AN=2;DP=359;Dels=0.00;FS=0.000;HaplotypeScore=24.4379;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=17.38;SB=-3.248e+03 GT:AD:DP:GQ:PL 1/1:0,357:359:99:6240,711,0 chrIX 379276 . A C 4106.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.69;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4106,462,0 chrIX 379313 . T C 3795.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.19;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3795,432,0 chrIX 379472 . C T 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=3.498;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.958;QD=22.13;ReadPosRankSum=0.726;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3983,435,0 chrIX 379493 . C G 3620.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.57;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:3620,414,0 chrIX 379529 . G A 3896.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.52;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3896,429,0 chrIX 379942 . A C 1414 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3716;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=13.09;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1447,165,0 chrIX 379944 . G C 1396 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9490;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=12.69;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1429,165,0 chrIX 380031 . A T 3176 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.61;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3209,357,0 chrIX 380325 . A G 3869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=187;Dels=0.00;FS=5.855;HaplotypeScore=17.4908;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.419;QD=20.69;ReadPosRankSum=2.962;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:3,182:187:99:3869,435,0 chrIX 380666 . A G 3688.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.35;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3688,417,0 chrIX 380768 . C T 2572 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=24.50;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2605,285,0 chrIX 380843 . A G 3640.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.95;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3640,411,0 chrIX 380934 . A G 1353 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=3.3868;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=10.49;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1386,165,0 chrIX 380958 . T C 772 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=252.8388;MLEAC=2;MLEAF=1.00;MQ=34.60;MQ0=0;QD=6.23;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,120:124:93:805,93,0 chrIX 380973 . A G 1257 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.1168;MLEAC=2;MLEAF=1.00;MQ=40.75;MQ0=0;QD=9.11;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:1290,150,0 chrIX 380999 . G A 2320 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=14.97;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2353,261,0 chrIX 381073 . G A 3735.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.66;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3735,411,0 chrIX 381084 . A C 3529.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.57;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3529,396,0 chrIX 381277 . T C 4152.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.9349;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=22.44;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4152,465,0 chrIX 381521 . A G 2697 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=20.75;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2730,315,0 chrIX 381525 . C G 2570 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=19.77;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2603,294,0 chrIX 381533 . A G 2650 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=19.78;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2683,309,0 chrIX 381607 . C T 4560.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.3330;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.51;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4560,501,0 chrIX 381696 . A G 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=16.0269;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-1.466;QD=20.33;ReadPosRankSum=1.705;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2696,309,0 chrIX 382331 . T C 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=4.478;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=0;MQRankSum=0.012;QD=20.32;ReadPosRankSum=1.708;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2939,327,0 chrIX 382343 . G A 2670 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=19.07;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2703,303,0 chrIX 382352 . G A 2602 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=37.94;MQ0=0;QD=18.20;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2635,291,0 chrIX 382367 . T C 2485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.01;FS=3.700;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=0;MQRankSum=-1.369;QD=17.26;ReadPosRankSum=1.708;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2518,282,0 chrIX 382388 . T G 1928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=130;Dels=0.00;FS=3.748;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;MQRankSum=-0.785;QD=14.83;ReadPosRankSum=1.705;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:1961,219,0 chrIX 382390 . G A 2027 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=41.63;MQ0=0;QD=15.24;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2060,228,0 chrIX 382403 . A G 2012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=129;Dels=0.00;FS=5.663;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;MQRankSum=0.768;QD=15.60;ReadPosRankSum=2.896;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:3,123:129:99:2045,228,0 chrIX 382528 . C T 5285.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=23.28;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5285,594,0 chrIX 382690 . T C 8379.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=371;Dels=0.00;FS=0.000;HaplotypeScore=28.0217;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=0.761;QD=22.58;ReadPosRankSum=1.713;SB=-3.375e+03 GT:AD:DP:GQ:PL 1/1:1,370:371:99:8379,966,0 chrIX 382781 . C T 8813.01 filter AC=2;AF=1.00;AN=2;DP=418;Dels=0.00;FS=0.000;HaplotypeScore=11.7215;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=21.08;SB=-5.238e+03 GT:AD:DP:GQ:PL 1/1:0,416:418:99:8813,987,0 chrIX 382792 . T C 8083.01 filter AC=2;AF=1.00;AN=2;DP=402;Dels=0.00;FS=0.000;HaplotypeScore=12.2155;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.11;SB=-4.849e+03 GT:AD:DP:GQ:PL 1/1:0,401:402:99:8083,938,0 chrIX 382915 . A T 1539 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.997;DP=371;Dels=0.00;FS=2.375;HaplotypeScore=477.4869;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=-0.496;QD=4.15;ReadPosRankSum=-14.596;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:216,154:371:99:1572,177,0 chrIX 382918 . C A,T 1096.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.106;DP=362;Dels=0.00;FS=3.729;HaplotypeScore=436.3927;MLEAC=1,1;MLEAF=0.500,0.500;MQ=53.44;MQ0=0;MQRankSum=1.357;QD=3.03;ReadPosRankSum=1.241;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/2:1,302,58:361:99:1156,699,639,456,0,367 chrIX 383027 . G A 5340.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=15.7187;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=20.46;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:5340,594,0 chrIX 383041 . C T 4774.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=2.7902;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=19.81;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,237:240:99:4774,516,0 chrIX 383061 . G T 4847.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=19.39;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:4847,531,0 chrIX 383079 . G A 4874.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=19.42;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:4874,523,0 chrIX 383176 . T C 4359.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.47;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,190:194:99:4359,498,0 chrIX 383369 . A G 2254 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=17.61;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2287,267,0 chrIX 383530 . G A 2176 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2209,240,0 chrIX 383892 . G C 395.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.260;DP=172;Dels=0.00;FS=249.954;HaplotypeScore=12.1218;MLEAC=1;MLEAF=0.500;MQ=57.18;MQ0=0;MQRankSum=-0.892;QD=2.30;ReadPosRankSum=-9.108;SB=0.037 GT:AD:DP:GQ:PL 0/1:106,65:172:99:425,0,1364 chrIX 384118 . A G 4855.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=19.90;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:4855,570,0 chrIX 384159 . G A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.98;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,181:185:99:4067,447,0 chrIX 384189 . T C 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=179;Dels=0.00;FS=7.050;HaplotypeScore=11.2868;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=0.246;QD=21.12;ReadPosRankSum=2.393;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:2,173:179:99:3780,435,0 chrIX 384218 . A G 4291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.904;QD=20.73;ReadPosRankSum=1.681;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4291,480,0 chrIX 384418 . T C 4413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=193;Dels=0.00;FS=2.981;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.414;QD=22.87;ReadPosRankSum=2.399;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4413,492,0 chrIX 384629 . A G 4783.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.56;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4783,531,0 chrIX 384665 . G A 4623.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.2471;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4623,525,0 chrIX 385125 . C T 4750.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.0097;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4750,522,0 chrIX 385422 . G C 4513.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=23.51;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4513,513,0 chrIX 385599 . T C 1202 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.276;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.7083;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;MQRankSum=-0.425;QD=10.54;ReadPosRankSum=-1.641;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1235,116,0 chrIX 385600 . T C 1176 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.407;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.7083;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-1.039;QD=10.23;ReadPosRankSum=-1.642;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1209,118,0 chrIX 385607 . A G 1035 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.137;DP=111;Dels=0.00;FS=2.504;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;MQRankSum=-0.427;QD=9.32;ReadPosRankSum=1.300;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:3,108:111:99:1068,102,0 chrIX 385724 . G A 2932 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.7751;MLEAC=2;MLEAF=1.00;MQ=38.18;MQ0=0;QD=22.05;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2965,345,0 chrIX 385892 . A C 3271.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=41.60;MQ0=0;QD=18.59;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3271,375,0 chrIX 385951 . C T 2134 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=13.25;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2167,243,0 chrIX 385961 . A G 2361 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.5681;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=13.89;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:2394,279,0 chrIX 386028 . T G 3607.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=23.42;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3607,414,0 chrIX 386051 . A G 3685.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=23.32;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3685,417,0 chrIX 386125 . A T 4170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.6960;MLEAC=2;MLEAF=1.00;MQ=41.15;MQ0=0;MQRankSum=-0.687;QD=21.83;ReadPosRankSum=1.714;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4170,462,0 chrIX 386244 . A G 1823 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.67;MQ0=0;QD=13.71;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1856,213,0 chrIX 386254 . T G 1556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.996;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.62;MQ0=0;MQRankSum=-1.353;QD=12.16;ReadPosRankSum=1.705;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:1589,183,0 chrIX 386266 . C T 1724 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=34.07;MQ0=0;QD=12.49;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1757,198,0 chrIX 386312 . C T 1810 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;QD=16.61;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1843,213,0 chrIX 386321 . C T 1759 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.89;MQ0=0;QD=18.91;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1792,213,0 chrIX 386334 . A T 1801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=91;Dels=0.03;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;MQRankSum=-0.551;QD=19.79;ReadPosRankSum=1.693;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1834,213,0 chrIX 386360 . G A 1640 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=20.00;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1673,192,0 chrIX 386386 . T C 1715 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=18.05;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1748,201,0 chrIX 386399 . G A 2002 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=17.72;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2035,231,0 chrIX 386447 . T G 2625 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=20.67;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2658,297,0 chrIX 386492 . G C 2095 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=17.75;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2128,249,0 chrIX 386511 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=91.6427;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;QD=13.49;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1517,177,0 chrIX 386561 . G C 991 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;QD=9.35;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1024,123,0 chrIX 386566 . G A 1155 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.98;MQ0=0;QD=10.04;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1188,135,0 chrIX 386589 . A G 1400 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.29;MQ0=0;QD=11.57;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1433,162,0 chrIX 386592 . G A 1365 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=39.09;MQ0=0;QD=11.57;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1398,156,0 chrIX 386665 . G T 2979 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.2657;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=20.27;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3012,336,0 chrIX 386872 . A G 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=1.399;QD=19.01;ReadPosRankSum=1.710;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3037,348,0 chrIX 387056 . G A 2965 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2998,330,0 chrIX 387099 . C G 1857 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1890,219,0 chrIX 387176 . G A 516 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=23.6633;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=7.70;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:8,57:67:63:549,63,0 chrIX 387224 . G A 2236 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.05;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2269,249,0 chrIX 387325 . A C 2863 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.47;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2896,333,0 chrIX 388181 . G C 2002 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.75;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2035,234,0 chrIX 388220 . A G 1383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.584;QD=19.76;ReadPosRankSum=1.633;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1416,168,0 chrIX 388455 . C T 2253 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2286,252,0 chrIX 388520 . A C 2530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=115;Dels=0.00;FS=3.941;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.820;QD=22.00;ReadPosRankSum=1.641;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2563,300,0 chrIX 388703 . G A 2113 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.0695;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.12;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2146,240,0 chrIX 389030 . C T 3031 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.29;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3064,345,0 chrIX 389094 . G T 3459.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.86;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3459,390,0 chrIX 389156 . C T 2873 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=21.93;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,127:131:99:2906,318,0 chrIX 389168 . T A 2633 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=22.90;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2666,294,0 chrIX 389212 . T C 1748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.01;FS=3.317;HaplotypeScore=7.5769;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-1.417;QD=19.64;ReadPosRankSum=1.653;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1781,201,0 chrIX 389259 . A G 322.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310;DP=90;Dels=0.00;FS=14.196;HaplotypeScore=56.0640;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-1.164;QD=3.58;ReadPosRankSum=-2.410;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:62,28:90:23:355,23,0 chrIX 389270 . A G 360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.286;DP=94;Dels=0.00;FS=1.276;HaplotypeScore=8.7376;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=1.592;QD=3.83;ReadPosRankSum=3.359;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:12,82:94:31:393,31,0 chrIX 389295 . C T 1934 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=13.0512;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=17.91;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1967,216,0 chrIX 389434 . A G 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=111;Dels=0.00;FS=8.507;HaplotypeScore=5.3408;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=-0.211;QD=15.06;ReadPosRankSum=2.405;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:1705,192,0 chrIX 389444 . T C 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3503;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;MQRankSum=-1.283;QD=16.31;ReadPosRankSum=1.476;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1794,201,0 chrIX 389512 . T A 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=128;Dels=0.00;FS=2.672;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-0.778;QD=23.72;ReadPosRankSum=2.411;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3069,330,0 chrIX 389745 . C T 6711.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=20.8555;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=23.71;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,282:283:99:6711,744,0 chrIX 389949 . T C 6229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=347;Dels=0.00;FS=9.572;HaplotypeScore=17.5302;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;MQRankSum=0.817;QD=17.95;ReadPosRankSum=2.962;SB=-4.223e+03 GT:AD:DP:GQ:PL 1/1:3,342:347:99:6229,705,0 chrIX 389968 . C T 5536.01 PASS AC=2;AF=1.00;AN=2;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.37;MQ0=0;QD=16.05;SB=-4.393e+03 GT:AD:DP:GQ:PL 1/1:0,343:345:99:5536,618,0 chrIX 390119 . T C 9719.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=418;Dels=0.00;FS=0.000;HaplotypeScore=30.6016;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.743;QD=23.25;ReadPosRankSum=1.217;SB=-5.101e+03 GT:AD:DP:GQ:PL 1/1:1,416:418:99:9719,1095,0 chrIX 390169 . G A 6894.01 PASS AC=2;AF=1.00;AN=2;DP=354;Dels=0.00;FS=0.000;HaplotypeScore=39.4245;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.47;SB=-3.192e+03 GT:AD:DP:GQ:PL 1/1:0,354:354:99:6894,800,0 chrIX 390207 . T C 7335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=349;Dels=0.00;FS=12.689;HaplotypeScore=15.5654;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=-0.221;QD=21.02;ReadPosRankSum=2.255;SB=-3.946e+03 GT:AD:DP:GQ:PL 1/1:4,339:349:99:7335,824,0 chrIX 390275 . A G 8302.01 filter AC=2;AF=1.00;AN=2;DP=392;Dels=0.00;FS=0.000;HaplotypeScore=29.4573;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.18;SB=-3.593e+03 GT:AD:DP:GQ:PL 1/1:0,392:392:99:8302,948,0 chrIX 390439 . G T 7038.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=14.1024;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.56;SB=-3.668e+03 GT:AD:DP:GQ:PL 1/1:0,310:312:99:7038,795,0 chrIX 390525 . T C 5440.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=15.0356;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.20;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5440,612,0 chrIX 390703 . T A 5696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=2;MQRankSum=-0.339;QD=21.02;ReadPosRankSum=2.898;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:6,265:271:99:5696,620,0 chrIX 390718 . T C 5746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=274;Dels=0.00;FS=3.023;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=2;MQRankSum=-0.475;QD=20.97;ReadPosRankSum=2.341;SB=-2.972e+03 GT:AD:DP:GQ:PL 1/1:2,271:274:99:5746,677,0 chrIX 390814 . A T 5232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=254;Dels=0.00;FS=3.169;HaplotypeScore=19.4876;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=1;MQRankSum=-0.490;QD=20.60;ReadPosRankSum=0.780;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:1,253:254:99:5232,594,0 chrIX 390856 . G A 5429.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=15.4127;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=1;QD=20.33;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:5429,618,0 chrIX 390899 . T G 6142.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=11.1155;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=1;QD=22.09;SB=-3.383e+03 GT:AD:DP:GQ:PL 1/1:0,276:278:99:6142,705,0 chrIX 390981 . T C 176.03 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.74;SB=-3.878e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:209,24,0 chrIX 391033 . A T 180.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;DP=139;Dels=0.00;FS=6.492;HaplotypeScore=32.6893;MLEAC=1;MLEAF=0.500;MQ=37.06;MQ0=0;MQRankSum=1.006;QD=1.30;ReadPosRankSum=-6.232;SB=-3.370e+02 GT:AD:DP:GQ:PL 0/1:55,84:139:99:210,0,836 chrIX 391113 . A T 2197.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;DP=385;Dels=0.00;FS=25.208;HaplotypeScore=21.5530;MLEAC=1;MLEAF=0.500;MQ=40.68;MQ0=4;MQRankSum=-4.495;QD=5.71;ReadPosRankSum=0.376;SB=-9.430e+02 GT:AD:DP:GQ:PL 0/1:235,149:385:99:2227,0,3344 chrIX 391126 . A G 3175.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.637;DP=340;Dels=0.00;FS=30.451;HaplotypeScore=28.6156;MLEAC=1;MLEAF=0.500;MQ=41.51;MQ0=4;MQRankSum=5.579;QD=9.34;ReadPosRankSum=0.886;SB=-1.715e+03 GT:AD:DP:GQ:PL 0/1:106,233:340:99:3205,0,1677 chrIX 391135 . A G 1048.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.843;DP=305;Dels=0.00;FS=55.654;HaplotypeScore=24.6609;MLEAC=1;MLEAF=0.500;MQ=42.23;MQ0=4;MQRankSum=-3.218;QD=3.44;ReadPosRankSum=-3.562;SB=-2.670e+02 GT:AD:DP:GQ:PL 0/1:220,85:305:99:1078,0,3293 chrIX 391147 . T G 2996.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.250;DP=254;Dels=0.00;FS=50.686;HaplotypeScore=9.8040;MLEAC=1;MLEAF=0.500;MQ=42.52;MQ0=4;MQRankSum=5.136;QD=11.80;ReadPosRankSum=3.190;SB=-1.098e+03 GT:AD:DP:GQ:PL 0/1:64,187:254:99:3026,0,677 chrIX 391153 . G A 4755.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=237;Dels=0.00;FS=7.893;HaplotypeScore=8.9171;MLEAC=2;MLEAF=1.00;MQ=42.66;MQ0=4;MQRankSum=1.361;QD=20.06;ReadPosRankSum=2.396;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:2,233:237:99:4755,540,0 chrIX 391198 . G A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.3887;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=2;QD=17.77;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3306,369,0 chrIX 391273 . A G 645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.317;DP=54;Dels=0.00;FS=3.260;HaplotypeScore=8.7738;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=2;MQRankSum=1.522;QD=11.94;ReadPosRankSum=3.106;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:14,40:54:42:678,42,0 chrIX 391276 . A G 488.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.039;DP=49;Dels=0.00;FS=8.646;HaplotypeScore=4.5025;MLEAC=1;MLEAF=0.500;MQ=26.10;MQ0=1;MQRankSum=1.202;QD=9.96;ReadPosRankSum=4.695;SB=-5.901e+01 GT:AD:DP:GQ:PL 0/1:21,28:49:99:518,0,140 chrIX 391288 . G A 305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;DP=55;Dels=0.00;FS=19.988;HaplotypeScore=200.9339;MLEAC=2;MLEAF=1.00;MQ=27.08;MQ0=2;MQRankSum=-1.183;QD=5.55;ReadPosRankSum=-4.902;SB=-4.000e+01 GT:AD:DP:GQ:PL 1/1:27,28:55:39:338,39,0 chrIX 391327 . G T 719.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.291;DP=102;Dels=0.00;FS=34.020;HaplotypeScore=335.2872;MLEAC=1;MLEAF=0.500;MQ=26.86;MQ0=1;MQRankSum=1.552;QD=7.05;ReadPosRankSum=-3.271;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,52:102:99:749,0,331 chrIX 391347 . C T 223.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;DP=134;Dels=0.00;FS=11.932;HaplotypeScore=84.6684;MLEAC=1;MLEAF=0.500;MQ=25.09;MQ0=3;MQRankSum=1.852;QD=1.66;ReadPosRankSum=-3.637;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:99,34:134:99:253,0,933 chrIX 391351 . A G 127.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.145;DP=150;Dels=0.00;FS=7.819;HaplotypeScore=42.3785;MLEAC=1;MLEAF=0.500;MQ=24.44;MQ0=4;MQRankSum=0.918;QD=0.85;ReadPosRankSum=2.011;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:112,38:150:99:157,0,1087 chrIX 391354 . G A 335.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;DP=155;Dels=0.00;FS=14.704;HaplotypeScore=82.8518;MLEAC=1;MLEAF=0.500;MQ=24.27;MQ0=5;MQRankSum=1.963;QD=2.16;ReadPosRankSum=-3.678;SB=-5.101e+01 GT:AD:DP:GQ:PL 0/1:104,50:155:99:365,0,854 chrIX 391363 . A G 349.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.962;DP=167;Dels=0.00;FS=21.220;HaplotypeScore=48.3725;MLEAC=1;MLEAF=0.500;MQ=23.30;MQ0=9;MQRankSum=-1.842;QD=2.09;ReadPosRankSum=3.074;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:110,57:167:99:379,0,959 chrIX 391372 . G T 1727 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.676;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.1240;MLEAC=2;MLEAF=1.00;MQ=23.44;MQ0=9;MQRankSum=-0.359;QD=9.98;ReadPosRankSum=1.479;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:1,172:173:99:1760,207,0 chrIX 391405 . A G 597.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.175;DP=202;Dels=0.00;FS=20.490;HaplotypeScore=17.6617;MLEAC=1;MLEAF=0.500;MQ=22.07;MQ0=18;MQRankSum=1.694;QD=2.96;ReadPosRankSum=5.302;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:115,87:202:99:627,0,663 chrIX 391408 . G A 613.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.126;DP=199;Dels=0.00;FS=17.083;HaplotypeScore=12.3209;MLEAC=1;MLEAF=0.500;MQ=22.18;MQ0=18;MQRankSum=3.021;QD=3.08;ReadPosRankSum=4.566;SB=-1.070e+02 GT:AD:DP:GQ:PL 0/1:115,84:199:99:643,0,679 chrIX 391411 . A G 695.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.696;DP=196;Dels=0.00;FS=17.779;HaplotypeScore=8.3340;MLEAC=1;MLEAF=0.500;MQ=22.50;MQ0=18;MQRankSum=-2.036;QD=3.55;ReadPosRankSum=-0.727;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:93,103:196:99:725,0,670 chrIX 391419 . T A 669.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;DP=199;Dels=0.00;FS=18.664;HaplotypeScore=19.5023;MLEAC=1;MLEAF=0.500;MQ=22.12;MQ0=17;MQRankSum=3.401;QD=3.36;ReadPosRankSum=-0.458;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/1:107,92:199:99:699,0,786 chrIX 391428 . C T 464.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;DP=185;Dels=0.00;FS=16.654;HaplotypeScore=35.3801;MLEAC=1;MLEAF=0.500;MQ=22.17;MQ0=18;MQRankSum=-1.116;QD=2.51;ReadPosRankSum=4.357;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:102,82:185:99:494,0,957 chrIX 391432 . A G 534.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.953;DP=182;Dels=0.00;FS=19.122;HaplotypeScore=33.9240;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=21;MQRankSum=1.265;QD=2.93;ReadPosRankSum=-5.228;SB=-1.000e+02 GT:AD:DP:GQ:PL 0/1:104,78:182:99:564,0,791 chrIX 391435 . G A 501.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.203;DP=177;Dels=0.00;FS=17.238;HaplotypeScore=33.9240;MLEAC=1;MLEAF=0.500;MQ=21.82;MQ0=21;MQRankSum=-0.846;QD=2.83;ReadPosRankSum=4.092;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:93,83:177:99:531,0,695 chrIX 391441 . A G 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.718;DP=166;Dels=0.00;FS=1.178;HaplotypeScore=34.9390;MLEAC=1;MLEAF=0.500;MQ=21.11;MQ0=25;MQRankSum=4.102;QD=0.23;ReadPosRankSum=3.770;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:147,18:166:69:69,0,1070 chrIX 391453 . G T 1405 filter AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=21.52;MQ0=21;QD=9.49;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1438,168,0 chrIX 391489 . A G 554.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.028;DP=133;Dels=0.00;FS=9.279;HaplotypeScore=26.8196;MLEAC=1;MLEAF=0.500;MQ=19.48;MQ0=23;MQRankSum=-1.501;QD=4.17;ReadPosRankSum=0.082;SB=-3.450e+02 GT:AD:DP:GQ:PL 0/1:69,63:133:99:584,0,435 chrIX 391498 . G T 759.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.084;DP=142;Dels=0.00;FS=10.083;HaplotypeScore=27.3151;MLEAC=1;MLEAF=0.500;MQ=18.75;MQ0=29;MQRankSum=-1.253;QD=5.35;ReadPosRankSum=-1.596;SB=-3.750e+02 GT:AD:DP:GQ:PL 0/1:43,97:142:99:789,0,150 chrIX 391534 . A G 441.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;DP=118;Dels=0.00;FS=6.740;HaplotypeScore=19.9903;MLEAC=1;MLEAF=0.500;MQ=17.10;MQ0=24;MQRankSum=-1.228;QD=3.74;ReadPosRankSum=6.885;SB=-2.130e+02 GT:AD:DP:GQ:PL 0/1:48,70:118:99:471,0,210 chrIX 391543 . G T 678 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.077;DP=106;Dels=0.00;FS=12.435;HaplotypeScore=12.9145;MLEAC=2;MLEAF=1.00;MQ=16.97;MQ0=24;MQRankSum=-0.997;QD=6.40;ReadPosRankSum=3.373;SB=-3.088e+02 GT:AD:DP:GQ:PL 1/1:11,94:106:34:711,34,0 chrIX 391582 . A G 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;DP=37;Dels=0.00;FS=16.815;HaplotypeScore=29.5055;MLEAC=1;MLEAF=0.500;MQ=16.53;MQ0=11;MQRankSum=1.041;QD=0.76;ReadPosRankSum=1.792;SB=-6.532e-03 GT:AD:DP:GQ:PL 0/1:29,8:37:52:58,0,52 chrIX 391612 . A G 124.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.332;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=12.7635;MLEAC=1;MLEAF=0.500;MQ=21.62;MQ0=6;MQRankSum=2.785;QD=1.22;ReadPosRankSum=1.395;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:26,76:102:88:154,0,88 chrIX 391615 . G A 189.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;DP=108;Dels=0.00;FS=1.766;HaplotypeScore=6.3172;MLEAC=1;MLEAF=0.500;MQ=21.68;MQ0=7;MQRankSum=2.851;QD=1.75;ReadPosRankSum=-0.616;SB=-1.109e+02 GT:AD:DP:GQ:PL 0/1:20,88:108:56:219,0,56 chrIX 391618 . A G 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.264;DP=128;Dels=0.00;FS=1.658;HaplotypeScore=4.5040;MLEAC=1;MLEAF=0.500;MQ=21.59;MQ0=9;MQRankSum=-2.983;QD=0.19;ReadPosRankSum=1.553;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:106,22:128:54:54,0,227 chrIX 391626 . T A 289.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.815;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=7.8971;MLEAC=1;MLEAF=0.500;MQ=21.49;MQ0=14;MQRankSum=2.062;QD=1.99;ReadPosRankSum=-0.164;SB=-1.760e+02 GT:AD:DP:GQ:PL 0/1:25,116:143:46:319,0,46 chrIX 391639 . A G 325.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;DP=171;Dels=0.00;FS=5.290;HaplotypeScore=25.3197;MLEAC=1;MLEAF=0.500;MQ=21.09;MQ0=20;MQRankSum=3.234;QD=1.90;ReadPosRankSum=0.722;SB=-1.760e+02 GT:AD:DP:GQ:PL 0/1:38,133:171:82:355,0,82 chrIX 391660 . G T 538 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.124;DP=192;Dels=0.00;FS=8.851;HaplotypeScore=6.3455;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=22;MQRankSum=-0.803;QD=2.80;ReadPosRankSum=5.714;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:42,150:192:47:571,47,0 chrIX 391693 . A G 89.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.592;DP=163;Dels=0.00;FS=1.031;HaplotypeScore=75.9745;MLEAC=1;MLEAF=0.500;MQ=21.05;MQ0=19;MQRankSum=0.427;QD=0.55;ReadPosRankSum=0.158;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:116,47:163:99:119,0,277 chrIX 391696 . A G 250.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.679;DP=146;Dels=0.00;FS=5.653;HaplotypeScore=120.1309;MLEAC=1;MLEAF=0.500;MQ=21.19;MQ0=18;MQRankSum=0.864;QD=1.71;ReadPosRankSum=-0.940;SB=-1.220e+02 GT:AD:DP:GQ:PL 0/1:57,89:146:99:280,0,101 chrIX 391705 . G T 144.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.500;DP=125;Dels=0.00;FS=19.377;HaplotypeScore=94.7630;MLEAC=1;MLEAF=0.500;MQ=21.79;MQ0=17;MQRankSum=-1.576;QD=1.15;ReadPosRankSum=2.321;SB=-4.600e+01 GT:AD:DP:GQ:PL 0/1:92,33:125:99:174,0,211 chrIX 391729 . A G 259.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;DP=99;Dels=0.00;FS=3.151;HaplotypeScore=15.1492;MLEAC=1;MLEAF=0.500;MQ=22.33;MQ0=5;MQRankSum=1.584;QD=2.62;ReadPosRankSum=1.584;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:37,62:99:99:289,0,332 chrIX 391741 . A G 173.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.692;DP=164;Dels=0.00;FS=29.224;HaplotypeScore=20.0740;MLEAC=1;MLEAF=0.500;MQ=22.11;MQ0=10;MQRankSum=-0.319;QD=1.05;ReadPosRankSum=1.019;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,35:164:99:203,0,792 chrIX 391750 . G T 2257 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=202;Dels=0.00;FS=3.811;HaplotypeScore=4.9928;MLEAC=2;MLEAF=1.00;MQ=23.56;MQ0=12;MQRankSum=0.963;QD=11.17;ReadPosRankSum=-1.651;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:3,199:202:99:2290,267,0 chrIX 391783 . A G 739.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.197;DP=225;Dels=0.00;FS=1.589;HaplotypeScore=10.0186;MLEAC=1;MLEAF=0.500;MQ=23.38;MQ0=12;MQRankSum=0.769;QD=3.28;ReadPosRankSum=3.868;SB=-2.890e+02 GT:AD:DP:GQ:PL 0/1:101,123:225:99:769,0,798 chrIX 391786 . G A 656.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.012;DP=224;Dels=0.00;FS=0.741;HaplotypeScore=10.0186;MLEAC=1;MLEAF=0.500;MQ=23.40;MQ0=12;MQRankSum=0.438;QD=2.93;ReadPosRankSum=4.190;SB=-3.000e+02 GT:AD:DP:GQ:PL 0/1:103,121:224:99:686,0,834 chrIX 391789 . A G 652.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670;DP=218;Dels=0.00;FS=3.757;HaplotypeScore=48.3282;MLEAC=1;MLEAF=0.500;MQ=23.41;MQ0=12;MQRankSum=-0.433;QD=2.99;ReadPosRankSum=-2.474;SB=-1.770e+02 GT:AD:DP:GQ:PL 0/1:132,86:218:99:682,0,789 chrIX 391797 . T A 1098.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.511;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=39.7050;MLEAC=1;MLEAF=0.500;MQ=23.61;MQ0=8;MQRankSum=-0.661;QD=5.25;ReadPosRankSum=2.900;SB=-4.360e+02 GT:AD:DP:GQ:PL 0/1:45,163:209:99:1128,0,370 chrIX 391806 . C T 149.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.888;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.2071;MLEAC=1;MLEAF=0.500;MQ=23.61;MQ0=7;MQRankSum=-0.450;QD=0.83;ReadPosRankSum=0.865;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:144,32:180:99:179,0,985 chrIX 391810 . A G 908.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.406;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.4637;MLEAC=1;MLEAF=0.500;MQ=23.55;MQ0=7;MQRankSum=1.141;QD=5.50;ReadPosRankSum=-0.759;SB=-3.770e+02 GT:AD:DP:GQ:PL 0/1:34,131:165:99:938,0,256 chrIX 391813 . G A 230.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.088;DP=162;Dels=0.00;FS=1.036;HaplotypeScore=4.1391;MLEAC=1;MLEAF=0.500;MQ=23.56;MQ0=7;MQRankSum=-0.951;QD=1.42;ReadPosRankSum=1.437;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:130,32:162:99:260,0,795 chrIX 391837 . G A 99.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.5413;MLEAC=1;MLEAF=0.500;MQ=22.78;MQ0=2;MQRankSum=-2.397;QD=1.98;ReadPosRankSum=2.343;SB=-1.591e+02 GT:AD:DP:GQ:PL 0/1:3,45:50:24:129,0,24 chrIX 391843 . A T 65.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.599;DP=33;Dels=0.00;FS=17.926;HaplotypeScore=6.4470;MLEAC=1;MLEAF=0.500;MQ=19.63;MQ0=5;MQRankSum=-2.446;QD=1.97;ReadPosRankSum=2.917;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:14,19:33:27:95,0,27 chrIX 391844 . G A 68.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;DP=35;Dels=0.00;FS=7.799;HaplotypeScore=9.1586;MLEAC=1;MLEAF=0.500;MQ=23.37;MQ0=4;MQRankSum=-1.500;QD=1.94;ReadPosRankSum=0.033;SB=-8.501e+01 GT:AD:DP:GQ:PL 0/1:7,21:35:27:98,0,27 chrIX 391855 . A G 437.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.425;DP=167;Dels=0.00;FS=4.121;HaplotypeScore=98.4746;MLEAC=1;MLEAF=0.500;MQ=32.27;MQ0=5;MQRankSum=-0.906;QD=2.62;ReadPosRankSum=-1.276;SB=-2.580e+02 GT:AD:DP:GQ:PL 0/1:88,74:167:99:467,0,797 chrIX 391864 . A G 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.134;DP=257;Dels=0.00;FS=13.211;HaplotypeScore=97.1069;MLEAC=1;MLEAF=0.500;MQ=31.41;MQ0=6;MQRankSum=1.215;QD=0.07;ReadPosRankSum=-1.693;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:220,33:257:47:47,0,2799 chrIX 391867 . A G 1145.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.653;DP=271;Dels=0.00;FS=3.703;HaplotypeScore=74.3447;MLEAC=1;MLEAF=0.500;MQ=31.34;MQ0=6;MQRankSum=1.749;QD=4.23;ReadPosRankSum=-0.942;SB=-3.610e+02 GT:AD:DP:GQ:PL 0/1:155,113:271:99:1175,0,1695 chrIX 391900 . A G 704.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.476;DP=636;Dels=0.00;FS=40.289;HaplotypeScore=66.9411;MLEAC=1;MLEAF=0.500;MQ=35.00;MQ0=13;MQRankSum=3.384;QD=1.11;ReadPosRankSum=-16.002;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:472,160:636:99:734,0,6298 chrIX 391912 . A G 5432.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.204;DP=742;Dels=0.00;FS=49.167;HaplotypeScore=48.6160;MLEAC=1;MLEAF=0.500;MQ=35.88;MQ0=13;MQRankSum=-4.868;QD=7.32;ReadPosRankSum=15.685;SB=-2.256e+03 GT:AD:DP:GQ:PL 0/1:257,483:742:99:5432,0,2364 chrIX 391933 . C T 13046.01 filter AC=2;AF=1.00;AN=2;DP=835;Dels=0.00;FS=0.000;HaplotypeScore=44.0252;MLEAC=2;MLEAF=1.00;MQ=34.72;MQ0=14;QD=15.62;SB=-6.597e+03 GT:AD:DP:GQ:PL 1/1:0,823:834:99:13046,1412,0 chrIX 391968 . T A 223.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;DP=838;Dels=0.00;FS=0.724;HaplotypeScore=46.3867;MLEAC=1;MLEAF=0.500;MQ=35.29;MQ0=11;MQRankSum=-2.679;QD=0.27;ReadPosRankSum=-1.180;SB=-2.080e+02 GT:AD:DP:GQ:PL 0/1:706,127:838:99:253,0,10131 chrIX 391984 . G A 10970.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.097;DP=697;Dels=0.00;FS=6.966;HaplotypeScore=70.9618;MLEAC=2;MLEAF=1.00;MQ=35.23;MQ0=11;MQRankSum=2.606;QD=15.74;ReadPosRankSum=-0.156;SB=-5.903e+03 GT:AD:DP:GQ:PL 1/1:21,676:697:99:10970,1051,0 chrIX 392002 . G T 7750.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=480;Dels=0.00;FS=0.000;HaplotypeScore=4.1664;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=12;MQRankSum=0.492;QD=16.15;ReadPosRankSum=1.221;SB=-3.903e+03 GT:AD:DP:GQ:PL 1/1:1,472:480:99:7750,872,0 chrIX 392035 . A G 1525.76 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;DP=206;Dels=0.04;FS=106.283;HaplotypeScore=76.7922;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=7;MQRankSum=-4.377;QD=7.41;ReadPosRankSum=1.154;SB=-3.268e+02 GT:AD:DP:GQ:PL 1/1:46,151:197:6:1557,6,0 chrIX 392038 . G A 1167 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=121;Dels=0.00;FS=22.977;HaplotypeScore=55.6073;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=7;MQRankSum=-2.851;QD=9.64;ReadPosRankSum=1.530;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:21,100:121:87:1200,87,0 chrIX 392049 . T A 307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.529;DP=30;Dels=0.03;FS=3.160;HaplotypeScore=14.5916;MLEAC=2;MLEAF=1.00;MQ=22.07;MQ0=3;MQRankSum=1.973;QD=10.23;ReadPosRankSum=1.203;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:3,25:29:45:340,45,0 chrIX 392062 . A G 162.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.418;DP=38;Dels=0.00;FS=8.023;HaplotypeScore=15.5116;MLEAC=1;MLEAF=0.500;MQ=20.35;MQ0=1;MQRankSum=0.356;QD=4.26;ReadPosRankSum=0.696;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:23,15:38:99:192,0,192 chrIX 392074 . G A 193.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.205;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=9.3412;MLEAC=1;MLEAF=0.500;MQ=18.94;MQ0=2;MQRankSum=0.506;QD=3.86;ReadPosRankSum=0.084;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,29:50:99:223,0,129 chrIX 392077 . G A 426 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=18.62;MQ0=2;MQRankSum=-1.039;QD=8.19;ReadPosRankSum=1.663;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:1,51:52:57:459,57,0 chrIX 392089 . G A 387.33 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.235;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=17.69;MQ0=3;MQRankSum=-1.627;QD=5.87;ReadPosRankSum=1.313;SB=-3.391e-01 GT:AD:DP:GQ:PL 1/1:2,64:66:14:420,14,0 chrIX 392095 . A T 486 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=17.69;MQ0=3;MQRankSum=-0.027;QD=7.36;ReadPosRankSum=1.677;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:1,65:66:66:519,66,0 chrIX 392096 . G A 502 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=17.70;MQ0=3;QD=7.72;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:66:535,66,0 chrIX 392103 . C T 177.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.162;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.7676;MLEAC=1;MLEAF=0.500;MQ=19.09;MQ0=7;MQRankSum=2.671;QD=1.70;ReadPosRankSum=-5.132;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,21:104:99:207,0,492 chrIX 392110 . G A 324.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=33.1936;MLEAC=1;MLEAF=0.500;MQ=20.08;MQ0=7;MQRankSum=3.257;QD=2.53;ReadPosRankSum=-6.619;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,37:128:99:354,0,589 chrIX 392119 . A G 291.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.266;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=41.8494;MLEAC=1;MLEAF=0.500;MQ=20.68;MQ0=9;MQRankSum=-3.142;QD=1.55;ReadPosRankSum=6.589;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:123,65:188:99:321,0,1251 chrIX 392128 . G T 2503 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.162;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=22.1809;MLEAC=2;MLEAF=1.00;MQ=21.22;MQ0=9;MQRankSum=1.237;QD=10.93;ReadPosRankSum=-3.050;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:19,210:229:99:2536,217,0 chrIX 392161 . A G 1731.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.770;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=15.0404;MLEAC=1;MLEAF=0.500;MQ=21.42;MQ0=19;MQRankSum=0.877;QD=5.18;ReadPosRankSum=4.345;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:144,190:334:99:1761,0,1279 chrIX 392164 . G A 1841.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.838;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=17.9602;MLEAC=1;MLEAF=0.500;MQ=21.74;MQ0=18;MQRankSum=0.784;QD=5.28;ReadPosRankSum=1.380;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,208:349:99:1871,0,1210 chrIX 392167 . A G 1319.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.813;DP=370;Dels=0.00;FS=0.000;HaplotypeScore=41.9581;MLEAC=1;MLEAF=0.500;MQ=21.80;MQ0=19;MQRankSum=-0.040;QD=3.56;ReadPosRankSum=1.353;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:234,136:370:99:1349,0,2065 chrIX 392175 . T A 2622.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.212;DP=425;Dels=0.02;FS=0.000;HaplotypeScore=42.6016;MLEAC=1;MLEAF=0.500;MQ=22.09;MQ0=17;MQRankSum=1.630;QD=6.17;ReadPosRankSum=1.320;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:149,268:417:99:2652,0,1390 chrIX 392184 . C T 1252.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;DP=444;Dels=0.00;FS=0.000;HaplotypeScore=33.2239;MLEAC=1;MLEAF=0.500;MQ=22.07;MQ0=18;MQRankSum=-1.438;QD=2.82;ReadPosRankSum=2.531;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:296,147:444:99:1282,0,2799 chrIX 392188 . A G 2330.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.448;DP=442;Dels=0.00;FS=0.000;HaplotypeScore=23.8055;MLEAC=1;MLEAF=0.500;MQ=22.10;MQ0=18;MQRankSum=1.931;QD=5.27;ReadPosRankSum=-1.505;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:173,269:442:99:2360,0,1589 chrIX 392191 . G A 1347.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.426;DP=435;Dels=0.00;FS=0.000;HaplotypeScore=39.9953;MLEAC=1;MLEAF=0.500;MQ=22.09;MQ0=18;MQRankSum=-0.605;QD=3.10;ReadPosRankSum=3.517;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:288,147:435:99:1377,0,2483 chrIX 392209 . G T 3973.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.940;DP=351;Dels=0.00;FS=0.000;HaplotypeScore=4.5255;MLEAC=2;MLEAF=1.00;MQ=21.87;MQ0=20;MQRankSum=1.498;QD=11.32;ReadPosRankSum=0.056;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,348:351:99:3973,467,0 chrIX 392242 . A G 861.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.835;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=34.6163;MLEAC=1;MLEAF=0.500;MQ=21.36;MQ0=22;MQRankSum=-0.986;QD=4.04;ReadPosRankSum=5.680;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,104:213:99:891,0,613 chrIX 392245 . G A 904.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.733;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=35.9834;MLEAC=1;MLEAF=0.500;MQ=21.29;MQ0=23;MQRankSum=-2.195;QD=4.48;ReadPosRankSum=5.116;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,108:202:99:934,0,520 chrIX 392248 . A G 159.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.808;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=35.1947;MLEAC=1;MLEAF=0.500;MQ=21.31;MQ0=22;MQRankSum=2.345;QD=0.82;ReadPosRankSum=-1.177;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:143,52:195:99:189,0,1036 chrIX 392256 . T A 536.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=1;MLEAF=0.500;MQ=20.33;MQ0=19;MQRankSum=-1.603;QD=4.92;ReadPosRankSum=1.891;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,79:109:93:566,0,93 chrIX 392434 . G A 14.91 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.375;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.67;MQ0=8;MQRankSum=-0.538;QD=0.40;ReadPosRankSum=1.375;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:5,31:37:6:46,6,0 chrIX 392445 . T A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.65;MQ0=15;QD=0.40;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,53:55:6:53,6,0 chrIX 392458 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.14;MQ0=15;MQRankSum=-2.295;QD=0.35;ReadPosRankSum=1.890;SB=1.57 GT:AD:DP:GQ:PL 1/1:6,57:63:6:53,6,0 chrIX 392479 . G T 88.26 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.59;MQ0=14;QD=1.18;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,75:75:15:121,15,0 chrIX 392512 . A G 23.10 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.715;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=22.28;MQ0=12;MQRankSum=1.376;QD=0.38;ReadPosRankSum=4.169;SB=-7.465e-02 GT:AD:DP:GQ:PL 0/1:42,19:61:15:53,0,15 chrIX 392515 . G A 23.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.353;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=22.47;MQ0=11;MQRankSum=1.674;QD=0.41;ReadPosRankSum=3.945;SB=-9.212e-02 GT:AD:DP:GQ:PL 0/1:38,18:56:14:53,0,14 chrIX 392526 . T A 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=20.86;MQ0=6;MQRankSum=2.696;QD=0.92;ReadPosRankSum=2.655;SB=2.03 GT:AD:DP:GQ:PL 1/1:21,15:36:9:65,9,0 chrIX 392539 . A G 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.126;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.9632;MLEAC=2;MLEAF=1.00;MQ=19.40;MQ0=3;MQRankSum=3.262;QD=1.22;ReadPosRankSum=3.147;SB=2.03 GT:AD:DP:GQ:PL 1/1:15,12:27:9:65,9,0 chrIX 392551 . G A 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.056;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.9601;MLEAC=2;MLEAF=1.00;MQ=18.91;MQ0=3;MQRankSum=3.423;QD=1.50;ReadPosRankSum=-1.395;SB=-6.491e-01 GT:AD:DP:GQ:PL 1/1:7,15:22:9:65,9,0 chrIX 392575 . A G 13.24 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=16.26;MQ0=6;MQRankSum=2.700;QD=0.70;ReadPosRankSum=-0.540;SB=-3.205e-02 GT:AD:DP:GQ:PL 0/1:9,10:19:19:43,0,19 chrIX 392602 . G A 209 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.51;MQ0=11;QD=3.87;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,53:54:30:242,30,0 chrIX 392629 . A G 79.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;DP=63;Dels=0.00;FS=26.315;HaplotypeScore=3.5347;MLEAC=1;MLEAF=0.500;MQ=16.82;MQ0=14;MQRankSum=2.383;QD=1.25;ReadPosRankSum=-0.430;SB=-6.501e+01 GT:AD:DP:GQ:PL 0/1:44,19:63:99:109,0,172 chrIX 392632 . G A 58.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;DP=60;Dels=0.00;FS=12.061;HaplotypeScore=3.5347;MLEAC=1;MLEAF=0.500;MQ=16.67;MQ0=14;MQRankSum=0.342;QD=0.97;ReadPosRankSum=-1.391;SB=-6.004e+01 GT:AD:DP:GQ:PL 0/1:40,20:60:88:88,0,175 chrIX 392635 . A G 139.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.948;DP=61;Dels=0.00;FS=11.106;HaplotypeScore=4.5214;MLEAC=1;MLEAF=0.500;MQ=16.54;MQ0=15;MQRankSum=-0.203;QD=2.28;ReadPosRankSum=2.399;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:21,40:61:68:169,0,68 chrIX 392643 . T A 78.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;DP=59;Dels=0.03;FS=24.870;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=16.14;MQ0=18;MQRankSum=2.192;QD=1.32;ReadPosRankSum=-2.339;SB=-7.950e+01 GT:AD:DP:GQ:PL 0/1:34,21:57:99:108,0,169 chrIX 392652 . C T 95.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.268;DP=67;Dels=0.00;FS=35.534;HaplotypeScore=7.7127;MLEAC=1;MLEAF=0.500;MQ=16.70;MQ0=20;MQRankSum=-1.826;QD=1.42;ReadPosRankSum=-0.663;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,33:67:99:125,0,135 chrIX 392656 . A G 99.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;DP=75;Dels=0.00;FS=6.833;HaplotypeScore=16.9260;MLEAC=1;MLEAF=0.500;MQ=18.60;MQ0=20;MQRankSum=1.201;QD=1.32;ReadPosRankSum=2.285;SB=-6.401e+01 GT:AD:DP:GQ:PL 0/1:52,22:75:99:129,0,172 chrIX 392659 . G A 79.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.968;DP=80;Dels=0.00;FS=34.211;HaplotypeScore=21.0386;MLEAC=1;MLEAF=0.500;MQ=19.92;MQ0=20;MQRankSum=-4.835;QD=0.99;ReadPosRankSum=3.514;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,28:80:99:109,0,320 chrIX 392677 . G T 109.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.156;DP=101;Dels=0.00;FS=34.408;HaplotypeScore=16.4337;MLEAC=1;MLEAF=0.500;MQ=24.71;MQ0=17;MQRankSum=-6.332;QD=1.08;ReadPosRankSum=-0.376;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,37:101:99:139,0,788 chrIX 392704 . A G 1679 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.312;DP=104;Dels=0.00;FS=4.359;HaplotypeScore=9.8068;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=10;MQRankSum=3.294;QD=16.14;ReadPosRankSum=2.942;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:6,94:104:99:1712,173,0 chrIX 392776 . A G 2111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=126;Dels=0.00;FS=3.035;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;MQRankSum=0.068;QD=16.75;ReadPosRankSum=2.352;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2144,263,0 chrIX 392779 . T C 2054 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=0;QD=17.26;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2087,254,0 chrIX 392805 . C G 1744 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.95;MQ0=0;QD=17.10;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1777,216,0 chrIX 393067 . A G 1678 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.8208;MLEAC=2;MLEAF=1.00;MQ=34.05;MQ0=0;QD=13.42;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:1711,195,0 chrIX 393106 . C T 2906 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=34.21;MQ0=0;QD=20.76;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2939,336,0 chrIX 393126 . T G 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=33.81;MQ0=0;MQRankSum=0.315;QD=21.38;ReadPosRankSum=1.680;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2877,339,0 chrIX 393156 . C A 2510 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.03;MQ0=0;QD=19.31;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2543,311,0 chrIX 393177 . G C 2250 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.05;MQ0=0;QD=17.44;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2283,275,0 chrIX 393181 . G A 2322 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=0;QD=18.58;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2355,281,0 chrIX 393186 . T A 2244 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;MQRankSum=-1.187;QD=17.53;ReadPosRankSum=1.705;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2277,272,0 chrIX 393280 . A G 4014.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=19.97;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4014,456,0 chrIX 393305 . G A 126.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.234;DP=278;Dels=0.00;FS=2.678;HaplotypeScore=16.5993;MLEAC=1;MLEAF=0.500;MQ=33.92;MQ0=0;MQRankSum=-0.451;QD=0.45;ReadPosRankSum=-11.234;SB=-1.014e+03 GT:AD:DP:GQ:PL 0/1:168,110:278:99:156,0,2627 chrIX 393324 . A G 1444.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.822;DP=290;Dels=0.00;FS=0.432;HaplotypeScore=12.4301;MLEAC=1;MLEAF=0.500;MQ=34.92;MQ0=0;MQRankSum=0.018;QD=4.98;ReadPosRankSum=-7.435;SB=-9.940e+02 GT:AD:DP:GQ:PL 0/1:166,123:290:99:1474,0,1093 chrIX 393335 . T C 940.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.972;DP=273;Dels=0.00;FS=2.831;HaplotypeScore=4.1141;MLEAC=1;MLEAF=0.500;MQ=32.89;MQ0=0;MQRankSum=-2.083;QD=3.44;ReadPosRankSum=-12.707;SB=-7.520e+02 GT:AD:DP:GQ:PL 0/1:180,91:273:99:970,0,1340 chrIX 393336 . T G 1279.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.010;DP=267;Dels=0.00;FS=3.620;HaplotypeScore=2.5367;MLEAC=1;MLEAF=0.500;MQ=32.65;MQ0=0;MQRankSum=2.715;QD=4.79;ReadPosRankSum=12.771;SB=-1.632e+03 GT:AD:DP:GQ:PL 0/1:88,179:267:99:1309,0,887 chrIX 393338 . T C 812.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.008;DP=269;Dels=0.00;FS=3.616;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=32.63;MQ0=0;MQRankSum=-1.456;QD=3.02;ReadPosRankSum=-12.376;SB=-6.320e+02 GT:AD:DP:GQ:PL 0/1:183,86:269:99:842,0,1360 chrIX 393359 . C T 2298 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.71;MQ0=0;QD=11.85;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:2331,258,0 chrIX 393395 . C G 2600 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=35.87;MQ0=0;QD=13.90;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:2633,309,0 chrIX 393403 . C T 2419 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.51;MQ0=0;QD=13.82;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,170:175:99:2452,276,0 chrIX 393406 . C T 2418 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.27;MQ0=0;QD=14.31;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2451,288,0 chrIX 393415 . A G 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;MQRankSum=1.644;QD=14.94;ReadPosRankSum=1.710;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2394,282,0 chrIX 393423 . T C 2417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=165;Dels=0.00;FS=3.786;HaplotypeScore=2.6688;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;MQRankSum=-1.144;QD=14.65;ReadPosRankSum=1.711;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2450,294,0 chrIX 393511 . C T 4092.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.2299;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=0;QD=21.54;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4092,450,0 chrIX 393516 . C T 4218.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.10;MQ0=0;QD=22.56;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4218,459,0 chrIX 393592 . T A 2604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.486;DP=142;Dels=0.00;FS=3.711;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=37.05;MQ0=0;MQRankSum=-1.585;QD=18.34;ReadPosRankSum=1.708;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2637,306,0 chrIX 393622 . C T 2064 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;QD=18.43;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2097,243,0 chrIX 393627 . T A 1843 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.99;MQ0=0;QD=16.17;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1876,216,0 chrIX 393657 . G A 1946 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=0;QD=16.92;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1979,225,0 chrIX 393659 . A G 1863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.367;DP=117;Dels=0.01;FS=5.275;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=0;MQRankSum=1.521;QD=15.92;ReadPosRankSum=3.382;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:4,112:116:99:1896,225,0 chrIX 393738 . C T 2353 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=11.7473;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;QD=18.67;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2386,267,0 chrIX 393745 . T G 2196 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=37.45;MQ0=0;QD=18.93;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2229,255,0 chrIX 393746 . A T 2216 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=37.45;MQ0=0;QD=19.10;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2249,255,0 chrIX 393794 . G A 1565 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=65.3847;MLEAC=2;MLEAF=1.00;MQ=35.83;MQ0=0;QD=14.76;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1598,174,0 chrIX 393799 . C T 1550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.181;DP=99;Dels=0.00;FS=3.018;HaplotypeScore=68.1207;MLEAC=2;MLEAF=1.00;MQ=35.32;MQ0=0;MQRankSum=1.778;QD=15.66;ReadPosRankSum=2.325;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1583,157,0 chrIX 393829 . T C 1927 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=18.71;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1960,216,0 chrIX 393886 . G C 2020 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;QD=21.72;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2053,234,0 chrIX 393889 . A C 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=3.100;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;MQRankSum=1.343;QD=21.43;ReadPosRankSum=1.697;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2133,243,0 chrIX 393931 . T A 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=88;Dels=0.01;FS=6.159;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=0;MQRankSum=-0.709;QD=17.64;ReadPosRankSum=2.919;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1585,174,0 chrIX 393945 . C T 1797 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=17.62;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1830,201,0 chrIX 393995 . A G 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.093;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;MQRankSum=0.061;QD=19.45;ReadPosRankSum=-1.241;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2776,330,0 chrIX 394021 . G T 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.104;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;MQRankSum=0.996;QD=22.04;ReadPosRankSum=-0.152;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3549,402,0 chrIX 394145 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=22.02;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3391,384,0 chrIX 394193 . A G 3890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=188;Dels=0.00;FS=3.447;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=1.622;QD=20.69;ReadPosRankSum=0.442;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3890,426,0 chrIX 394211 . T G 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.096;DP=199;Dels=0.00;FS=3.644;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.722;QD=20.15;ReadPosRankSum=-0.705;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4010,441,0 chrIX 394214 . G A 4298.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=21.38;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4298,471,0 chrIX 394371 . C G 4348.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=22.76;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4348,483,0 chrIX 394423 . T C 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.668;DP=200;Dels=0.00;FS=20.863;HaplotypeScore=10.4017;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.024;QD=21.11;ReadPosRankSum=3.700;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:5,193:200:99:4221,480,0 chrIX 394443 . C T 4407.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=23.32;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4407,477,0 chrIX 394583 . C T 3464.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=22.49;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3464,381,0 chrIX 394650 . T C 2797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=133;Dels=0.00;FS=7.878;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;MQRankSum=0.120;QD=21.03;ReadPosRankSum=2.413;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2830,315,0 chrIX 394651 . C T 2814 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=21.16;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2847,318,0 chrIX 394731 . G C 2687 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=10.0981;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=20.20;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2720,315,0 chrIX 394808 . A G 2135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=10.3769;MLEAC=2;MLEAF=1.00;MQ=41.89;MQ0=0;MQRankSum=-0.673;QD=17.50;ReadPosRankSum=1.703;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2168,243,0 chrIX 394840 . T C 472.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.556;DP=99;Dels=0.00;FS=19.370;HaplotypeScore=29.6835;MLEAC=1;MLEAF=0.500;MQ=37.62;MQ0=0;MQRankSum=-1.000;QD=4.77;ReadPosRankSum=-5.909;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:65,33:99:99:502,0,190 chrIX 394847 . T C 365 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.87;MQ0=0;QD=5.21;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:45:398,45,0 chrIX 394906 . A T 2297 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=21.27;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2330,252,0 chrIX 394958 . C G 1757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.395;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=109.6959;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;MQRankSum=1.088;QD=14.64;ReadPosRankSum=0.812;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,112:120:99:1790,213,0 chrIX 394992 . A G 1890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=9.620;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=-1.090;QD=16.58;ReadPosRankSum=2.407;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:1923,216,0 chrIX 395011 . T C 1769 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=14.74;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1802,201,0 chrIX 395026 . T G 1817 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=14.09;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1850,216,0 chrIX 395125 . A G 2966 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.82;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2999,339,0 chrIX 395422 . T A 4126.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=23.18;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4126,453,0 chrIX 395435 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=22.16;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3789,429,0 chrIX 395469 . T C 2929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=140;Dels=0.00;FS=3.577;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-0.187;QD=20.92;ReadPosRankSum=1.707;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2962,342,0 chrIX 395631 . G A 2855 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.3829;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=20.25;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2888,318,0 chrIX 395890 . G A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.79;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3327,366,0 chrIX 395916 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.99;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3068,336,0 chrIX 395951 . G A 2806 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8881;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.49;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2839,324,0 chrIX 396048 . A C 3662.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.0071;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.60;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3662,411,0 chrIX 396434 . C G 3272.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=16.0692;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.58;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3272,384,0 chrIX 396889 . C T 3429.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=19.94;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3429,372,0 chrIX 396902 . C T 2886 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=18.62;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:2919,324,0 chrIX 396906 . A G 2840 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=18.68;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2873,321,0 chrIX 397061 . C T 3200 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.7968;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.13;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3233,348,0 chrIX 397063 . T C 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=155;Dels=0.00;FS=6.579;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=0.345;QD=20.01;ReadPosRankSum=2.241;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:2,151:155:99:3134,348,0 chrIX 397113 . T A 2983 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.1085;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=19.25;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3016,342,0 chrIX 397178 . G A 152.06 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=115.2980;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=1.13;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:21:185,21,0 chrIX 397626 . A C 4877.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.58;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4877,567,0 chrIX 397837 . T C 5772.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=14.6123;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.29;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:5772,654,0 chrIX 398246 . T C 3969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=194;Dels=0.00;FS=3.889;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=0.481;QD=20.46;ReadPosRankSum=1.641;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:1,190:194:99:3969,441,0 chrIX 398250 . C T 3671.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=19.42;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3671,417,0 chrIX 398416 . C T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.72;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3317,372,0 chrIX 398457 . G C 2378 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=18.87;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2411,285,0 chrIX 398466 . T A 2608 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=19.46;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2641,294,0 chrIX 398482 . T G 2251 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.01;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2284,264,0 chrIX 398583 . G C 2650 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.90;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2683,303,0 chrIX 399239 . C T 3132 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=12.3819;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.21;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3165,351,0 chrIX 399287 . T C 2482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=3.765;HaplotypeScore=10.9094;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.778;QD=17.99;ReadPosRankSum=1.607;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2515,294,0 chrIX 399414 . A G 3990.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.17;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3990,471,0 chrIX 399545 . A T 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.686;QD=22.47;ReadPosRankSum=1.709;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3393,375,0 chrIX 399657 . A C 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=187;Dels=0.00;FS=6.185;HaplotypeScore=17.9066;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.190;QD=22.29;ReadPosRankSum=2.423;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4168,471,0 chrIX 400007 . T A,G 774.01 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.688;DP=319;Dels=0.01;FS=0.000;HaplotypeScore=213.8823;MLEAC=1,1;MLEAF=0.500,0.500;MQ=54.57;MQ0=3;MQRankSum=-0.430;QD=2.43;ReadPosRankSum=1.688;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/2:1,63,253:317:99:834,329,266,505,0,463 chrIX 401177 . T C 2328 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.56;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2361,273,0 chrIX 401181 . T C 2374 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.47;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2407,273,0 chrIX 401270 . C A 2447 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.6346;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.56;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2480,273,0 chrIX 401375 . C T 2543 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2398;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.84;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2576,291,0 chrIX 402055 . A G 5177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=246;Dels=0.00;FS=4.132;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=0.915;QD=21.04;ReadPosRankSum=1.619;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:1,245:246:99:5177,579,0 chrIX 402066 . C A 4574.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=19.46;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:4574,507,0 chrIX 402165 . T C 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.0208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.007;QD=20.17;ReadPosRankSum=1.712;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3470,390,0 chrIX 402823 . C T 2165 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.42;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2198,237,0 chrIX 402833 . A G 2100 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.19;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2133,246,0 chrIX 403232 . C T 3997.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.6134;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.37;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3997,447,0 chrIX 403261 . T C 3866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=3.570;HaplotypeScore=6.6071;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.713;QD=21.13;ReadPosRankSum=1.713;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3866,438,0 chrIX 403289 . A G 4507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.268;QD=21.46;ReadPosRankSum=1.682;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:4507,510,0 chrIX 403447 . C T 5166.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.81;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5166,564,0 chrIX 403510 . C T 5235.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.90;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5235,585,0 chrIX 403621 . C T 4902.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.79;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4902,540,0 chrIX 403622 . C T 4854.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.48;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:4854,540,0 chrIX 403638 . C A 4535.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.09;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4535,492,0 chrIX 403760 . A G 5368.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.54;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5368,600,0 chrIX 403814 . T C 4572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=194;Dels=0.00;FS=6.511;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.298;QD=23.57;ReadPosRankSum=2.398;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:2,190:194:99:4572,534,0 chrIX 403850 . G A 3767.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.16;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3767,426,0 chrIX 403943 . C T 5189.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.46;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5189,582,0 chrIX 403997 . G A 6018.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=21.2397;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.51;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:0,253:256:99:6018,660,0 chrIX 404522 . A G 4575.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.8058;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.33;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4575,534,0 chrIX 405278 . C G 3896.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.06;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3896,447,0 chrIX 405428 . T G 4528.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=16.5688;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.77;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4528,528,0 chrIX 405539 . A G 6621.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=12.1007;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.52;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,293:294:99:6621,759,0 chrIX 405590 . G T 6621.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.91;SB=-3.288e+03 GT:AD:DP:GQ:PL 1/1:0,288:289:99:6621,729,0 chrIX 405749 . A G 6018.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=15.9743;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.67;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,305:306:99:6018,710,0 chrIX 405812 . T G 4598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=232;Dels=0.00;FS=4.361;HaplotypeScore=6.9991;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.493;QD=19.82;ReadPosRankSum=1.702;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:4598,534,0 chrIX 405821 . C T 4548.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.55;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4548,495,0 chrIX 405854 . G A 3473.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.0197;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.18;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3473,387,0 chrIX 405945 . A G 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=158;Dels=0.00;FS=2.980;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-0.449;QD=22.18;ReadPosRankSum=2.387;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3505,396,0 chrIX 405973 . C T 3146 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.6366;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.55;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3179,345,0 chrIX 406173 . A G 1512 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=18.90;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1545,174,0 chrIX 406184 . G T 1195 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=17.84;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1228,135,0 chrIX 406186 . G C 1204 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=18.24;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1237,141,0 chrIX 406436 . T C 4901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.603;DP=220;Dels=0.00;FS=7.680;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.478;QD=22.28;ReadPosRankSum=3.781;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:5,215:220:99:4901,561,0 chrIX 407216 . G A 4530.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=16.7382;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.97;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4530,495,0 chrIX 407301 . C T 2944 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2473;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.49;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2977,324,0 chrIX 407554 . G T 4389.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.86;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4389,483,0 chrIX 407693 . A C 2727 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.14;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2760,312,0 chrIX 407727 . A G 3664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=3.367;HaplotypeScore=6.6145;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.703;QD=22.21;ReadPosRankSum=1.711;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3664,417,0 chrIX 408091 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=19.26;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3249,366,0 chrIX 408110 . T G 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.473;DP=181;Dels=0.00;FS=2.905;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.967;QD=18.28;ReadPosRankSum=0.281;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:3309,369,0 chrIX 408183 . T C 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=148;Dels=0.00;FS=2.951;HaplotypeScore=10.3772;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.410;QD=22.39;ReadPosRankSum=2.399;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3314,378,0 chrIX 408244 . A T 2628 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.66;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2661,303,0 chrIX 409106 . A T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0338;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.65;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3346,387,0 chrIX 409294 . C T 2256 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=14.4944;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.12;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,112:118:99:2289,252,0 chrIX 409838 . A G 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=3.554;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.841;QD=21.86;ReadPosRankSum=1.707;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:3049,357,0 chrIX 410111 . G A 3926.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0013;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.09;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3926,435,0 chrIX 410521 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=8.637;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.476;QD=23.76;ReadPosRankSum=2.306;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:2,135:139:99:3302,369,0 chrIX 410784 . T C 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=4.876;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.247;QD=18.80;ReadPosRankSum=1.677;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2402,276,0 chrIX 411094 . T C 4983.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.5890;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:4983,579,0 chrIX 411481 . T A 5001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.969;DP=223;Dels=0.00;FS=6.020;HaplotypeScore=15.6230;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.095;QD=22.43;ReadPosRankSum=2.960;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:3,220:223:99:5001,546,0 chrIX 411553 . A G 4479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=214;Dels=0.00;FS=2.956;HaplotypeScore=12.1599;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.773;QD=20.93;ReadPosRankSum=2.427;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:4479,527,0 chrIX 411969 . T C 2367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.02;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=0.016;QD=22.12;ReadPosRankSum=1.699;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2400,267,0 chrIX 411970 . T C 2319 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.02;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.67;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2352,270,0 chrIX 412153 . A T 1860 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.25;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1893,207,0 chrIX 412260 . G A 2303 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.74;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2336,255,0 chrIX 412381 . A G 1871 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1904,213,0 chrIX 412588 . A G 2606 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2639,294,0 chrIX 412645 . G T 3697.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3697,411,0 chrIX 414512 . G A 5055.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5055,570,0 chrIX 415609 . G T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.29;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3656,408,0 chrIX 415822 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=161;Dels=0.00;FS=2.844;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.021;QD=20.75;ReadPosRankSum=2.404;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3340,387,0 chrIX 415878 . C T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.59;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3457,396,0 chrIX 416240 . G A 4693.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.23;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4693,513,0 chrIX 416282 . T A 3045 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=19.65;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3078,342,0 chrIX 416283 . G A 3081 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=20.14;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3114,336,0 chrIX 416339 . C T 4086.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.97;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4086,453,0 chrIX 416380 . A G 5082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.233;DP=222;Dels=0.00;FS=8.426;HaplotypeScore=9.1368;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.892;QD=22.89;ReadPosRankSum=3.374;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:4,218:222:99:5082,567,0 chrIX 417395 . C T 4459.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4459,501,0 chrIX 417992 . C T 6299.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=15.6500;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.91;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:0,274:275:99:6299,693,0 chrIX 418028 . G A 5636.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.91;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5636,633,0 chrIX 418430 . T A 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=138;Dels=0.00;FS=3.108;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.269;QD=23.12;ReadPosRankSum=1.655;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3224,357,0 chrIX 418524 . A G 3058 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=162;Dels=0.00;FS=6.378;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;MQRankSum=-1.297;QD=18.88;ReadPosRankSum=2.404;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3091,345,0 chrIX 418530 . A G 2920 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=163;Dels=0.00;FS=6.431;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.09;MQ0=0;MQRankSum=-1.696;QD=17.91;ReadPosRankSum=2.284;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:2953,330,0 chrIX 418532 . A G 2563 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=16.43;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2596,300,0 chrIX 418547 . T A 2019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=40.71;MQ0=0;MQRankSum=-0.829;QD=14.22;ReadPosRankSum=1.683;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2052,219,0 chrIX 418559 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=13.16;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1875,204,0 chrIX 418859 . G T 5010.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.3408;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.77;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:5010,558,0 chrIX 419140 . C T 2354 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=18.39;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2387,270,0 chrIX 419141 . G A 2377 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=18.72;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2410,273,0 chrIX 419429 . A G 1255 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.57;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1288,144,0 chrIX 419495 . A G 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;DP=42;Dels=0.00;FS=13.702;HaplotypeScore=30.8031;MLEAC=1;MLEAF=0.500;MQ=54.25;MQ0=0;MQRankSum=-2.031;QD=0.38;ReadPosRankSum=-3.690;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:31,11:42:46:46,0,96 chrIX 419510 . A G 769 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=15.69;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:90:802,90,0 chrIX 419726 . G A 2876 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.97;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2909,321,0 chrIX 419811 . G A 4005.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.2564;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.13;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4005,441,0 chrIX 419999 . A G 4481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.9869;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.415;QD=20.94;ReadPosRankSum=1.716;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4481,513,0 chrIX 420167 . T G 3705.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.9948;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.73;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3705,429,0 chrIX 420215 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.57;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3263,378,0 chrIX 420788 . C G 2444 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=19.71;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,120:124:99:2477,276,0 chrIX 420791 . C T 2442 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=20.18;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2475,267,0 chrIX 420815 . G A 1857 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=17.69;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1890,204,0 chrIX 421475 . G A 6762.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=26.1134;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-3.538e+03 GT:AD:DP:GQ:PL 1/1:0,303:304:99:6762,747,0 chrIX 421593 . C T 5139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=242;Dels=0.00;FS=3.759;HaplotypeScore=19.3079;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.837;QD=21.24;ReadPosRankSum=1.472;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:1,240:242:99:5139,561,0 chrIX 422958 . G A 6189.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=13.4564;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:6189,687,0 chrIX 423571 . T C 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=25.8687;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;MQRankSum=-1.253;QD=22.72;ReadPosRankSum=1.710;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3635,417,0 chrIX 424169 . T C 5112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=219;Dels=0.00;FS=3.582;HaplotypeScore=9.9825;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.862;QD=23.34;ReadPosRankSum=1.653;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:5112,564,0 chrIX 424253 . A G 4510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.107;QD=22.00;ReadPosRankSum=1.698;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4510,510,0 chrIX 424322 . T C 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=165;Dels=0.00;FS=3.979;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.934;QD=20.94;ReadPosRankSum=1.690;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3455,390,0 chrIX 424518 . C A 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.079;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.1261;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.866;QD=22.70;ReadPosRankSum=0.105;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3029,309,0 chrIX 424571 . C T 2827 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.62;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2860,318,0 chrIX 424619 . A G 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=181;Dels=0.00;FS=5.344;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-1.129;QD=18.18;ReadPosRankSum=1.713;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:3290,384,0 chrIX 424625 . C T 3558.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=18.73;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3558,393,0 chrIX 424776 . A G 3778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=3.215;HaplotypeScore=9.2036;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;MQRankSum=-1.155;QD=21.47;ReadPosRankSum=1.633;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3778,423,0 chrIX 424793 . T C 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=182;Dels=0.00;FS=7.619;HaplotypeScore=4.3045;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;MQRankSum=-1.086;QD=19.54;ReadPosRankSum=2.342;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3557,405,0 chrIX 424866 . T C 4370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=220;Dels=0.00;FS=14.617;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-0.482;QD=19.86;ReadPosRankSum=2.959;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:3,216:220:99:4370,516,0 chrIX 425023 . G T 2767 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=16.57;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2800,312,0 chrIX 425056 . T C 3976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.041;QD=23.67;ReadPosRankSum=1.711;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3976,447,0 chrIX 425132 . G A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=22.09;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4242,474,0 chrIX 425137 . G T 4182.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=21.90;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4182,456,0 chrIX 425281 . G A 4122.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=24.68;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4122,441,0 chrIX 425440 . A G 4352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=192;Dels=0.00;FS=8.680;HaplotypeScore=6.8703;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.710;QD=22.67;ReadPosRankSum=2.373;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4352,498,0 chrIX 425460 . A G 4107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=4.150;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-1.370;QD=22.57;ReadPosRankSum=1.694;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4107,471,0 chrIX 425491 . G A 3740.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.67;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3740,411,0 chrIX 425513 . G A 3188 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.2257;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.11;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3221,363,0 chrIX 425605 . A G 4940.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.3589;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=20.93;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,233:236:99:4940,576,0 chrIX 425775 . T C 3474.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=20.68;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3474,413,0 chrIX 425807 . A T 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=160;Dels=0.00;FS=2.886;HaplotypeScore=7.2948;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=0;MQRankSum=-1.328;QD=17.62;ReadPosRankSum=2.342;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:2852,327,0 chrIX 425817 . A G 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=164;Dels=0.00;FS=2.830;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.30;MQ0=0;MQRankSum=-2.255;QD=18.48;ReadPosRankSum=2.360;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3064,360,0 chrIX 425829 . C T 3015 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=39.57;MQ0=0;QD=17.53;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3048,348,0 chrIX 425839 . C T 2729 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=41.35;MQ0=0;QD=15.68;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2762,321,0 chrIX 425847 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=43.27;MQ0=0;QD=16.76;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:2983,330,0 chrIX 425941 . C T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=21.93;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3312,369,0 chrIX 425954 . G A 2807 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.9655;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=19.77;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2840,318,0 chrIX 425973 . T C 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;MQRankSum=0.318;QD=17.80;ReadPosRankSum=1.685;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2650,318,0 chrIX 426001 . A G 2530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=144;Dels=0.00;FS=3.590;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;MQRankSum=-0.866;QD=17.57;ReadPosRankSum=1.708;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2563,297,0 chrIX 426032 . T C 2452 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=17.03;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2485,288,0 chrIX 426035 . T C 2517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;MQRankSum=-1.683;QD=17.73;ReadPosRankSum=1.708;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2550,285,0 chrIX 426091 . T G 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=136;Dels=0.00;FS=7.689;HaplotypeScore=11.3198;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;MQRankSum=-0.938;QD=18.63;ReadPosRankSum=2.413;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2567,297,0 chrIX 426151 . T A 2765 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=20.04;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2798,306,0 chrIX 426277 . C T 2970 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6572;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.68;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3003,324,0 chrIX 426339 . T C 3398.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.65;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3398,384,0 chrIX 426627 . C A 4325.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=18.0245;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.01;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4325,477,0 chrIX 427061 . A G 3318.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.7742;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3318,372,0 chrIX 427189 . A G 1918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.644;DP=88;Dels=0.00;FS=2.614;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.805;QD=21.80;ReadPosRankSum=2.874;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:3,85:88:99:1951,222,0 chrIX 427944 . G A 3940.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.02;FS=0.000;HaplotypeScore=26.6814;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.59;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3940,441,0 chrIX 428359 . A G 2725 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.1297;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=20.49;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,129:133:99:2758,318,0 chrIX 428391 . T C 2755 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.02;FS=0.000;HaplotypeScore=6.8317;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=18.74;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2788,321,0 chrIX 428393 . A G 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.6204;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=0.553;QD=19.26;ReadPosRankSum=1.660;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:2845,330,0 chrIX 428461 . C G 2736 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=21.05;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,126:130:99:2769,315,0 chrIX 428519 . A C 3580.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=23.25;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3580,411,0 chrIX 428656 . C G 1863 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=18.82;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1896,219,0 chrIX 428658 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=19.34;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1909,210,0 chrIX 428720 . T G 2270 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;MQRankSum=-0.624;QD=17.87;ReadPosRankSum=-0.291;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2303,258,0 chrIX 428722 . A G 2151 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=17.35;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2184,255,0 chrIX 428729 . C T 2410 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=17.99;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2443,267,0 chrIX 428868 . G A 2879 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.32;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2912,327,0 chrIX 428891 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.85;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3266,366,0 chrIX 428948 . C T 2995 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.35;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3028,336,0 chrIX 428983 . A C 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=4.150;HaplotypeScore=11.9459;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=0.879;QD=20.98;ReadPosRankSum=1.652;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2761,321,0 chrIX 429037 . T C 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=147;Dels=0.00;FS=2.849;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-1.129;QD=22.89;ReadPosRankSum=2.383;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3365,381,0 chrIX 429127 . T C 4305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=3.366;HaplotypeScore=5.0783;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.644;QD=22.54;ReadPosRankSum=1.714;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4305,480,0 chrIX 429153 . A G 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=181;Dels=0.00;FS=3.386;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.124;QD=20.57;ReadPosRankSum=1.694;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3724,420,0 chrIX 429223 . G A 3399.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.24;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3399,375,0 chrIX 429241 . T G 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=3.147;HaplotypeScore=5.8322;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-0.635;QD=19.26;ReadPosRankSum=1.689;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3173,372,0 chrIX 429417 . C T 3510.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.56;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3510,396,0 chrIX 429462 . T A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=22.82;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3400,378,0 chrIX 429465 . G A 3089 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.06;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3122,354,0 chrIX 430005 . C T 2044 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.7838;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.44;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2077,222,0 chrIX 430247 . G C 3618.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.1974;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.41;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:3618,408,0 chrIX 430497 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.61;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3754,411,0 chrIX 430585 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.97;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2689,318,0 chrIX 431755 . T C 6413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=290;Dels=0.00;FS=3.210;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=1;MQRankSum=0.354;QD=22.11;ReadPosRankSum=1.624;SB=-3.481e+03 GT:AD:DP:GQ:PL 1/1:1,289:290:99:6413,749,0 chrIX 431988 . A C 3001 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=179;Dels=0.00;FS=2.957;HaplotypeScore=15.1069;MLEAC=2;MLEAF=1.00;MQ=29.14;MQ0=15;MQRankSum=-2.434;QD=16.77;ReadPosRankSum=2.404;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:2,175:179:99:3034,342,0 chrIX 432102 . T A 826 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=103;Dels=0.00;FS=6.284;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=20.54;MQ0=35;MQRankSum=-1.630;QD=8.02;ReadPosRankSum=1.681;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:96:859,96,0 chrIX 432430 . C T 274.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.006;DP=183;Dels=0.00;FS=10.697;HaplotypeScore=11.7755;MLEAC=1;MLEAF=0.500;MQ=50.88;MQ0=4;MQRankSum=-8.462;QD=1.50;ReadPosRankSum=-1.290;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:145,38:183:99:304,0,2751 chrIX 432576 . G A 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.004;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=1;MLEAF=0.500;MQ=36.99;MQ0=21;MQRankSum=-3.636;QD=0.07;ReadPosRankSum=0.278;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,17:147:40:40,0,2330 chrIX 432639 . A G 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;DP=130;Dels=0.00;FS=3.607;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=41.26;MQ0=9;MQRankSum=-2.330;QD=0.34;ReadPosRankSum=-1.511;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:111,19:130:74:74,0,1891 chrIX 432664 . T C 1205 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.461;DP=112;Dels=0.00;FS=7.330;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=36.36;MQ0=14;MQRankSum=-0.634;QD=10.76;ReadPosRankSum=-1.829;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:8,101:112:37:1238,37,0 chrIX 432723 . T C 938 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.648;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=24.05;MQ0=17;MQRankSum=0.308;QD=9.29;ReadPosRankSum=1.223;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:7,94:101:70:971,70,0 chrIX 432771 . G A 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.950;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=27.05;MQ0=17;MQRankSum=-1.811;QD=0.21;ReadPosRankSum=-0.486;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,27:102:51:51,0,1220 chrIX 432859 . G A 580 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=19.83;MQ0=28;QD=9.67;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:69:613,69,0 chrIX 432897 . G A 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.719;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=1;MLEAF=0.500;MQ=20.98;MQ0=27;MQRankSum=-4.181;QD=0.40;ReadPosRankSum=0.711;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,27:81:62:62,0,462 chrIX 432908 . C T 603.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.248;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=21.58;MQ0=25;MQRankSum=4.493;QD=7.35;ReadPosRankSum=-0.694;SB=-6.547e-03 GT:AD:DP:GQ:PL 0/1:30,52:82:49:633,0,49 chrIX 432980 . G A 190.64 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.154;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=24.66;MQ0=4;MQRankSum=0.340;QD=7.63;ReadPosRankSum=1.021;SB=2.36 GT:AD:DP:GQ:PL 1/1:10,14:24:11:223,11,0 chrIX 432981 . G A 264 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.05;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=3;QD=12.00;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:30:297,30,0 chrIX 433072 . G A 1529 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=6;QD=17.99;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1562,171,0 chrIX 433105 . T C 2217 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=139;Dels=0.00;FS=9.647;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=8;MQRankSum=0.992;QD=15.95;ReadPosRankSum=2.900;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2250,258,0 chrIX 433113 . A C 2352 filter AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=35.40;MQ0=6;QD=16.22;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2385,279,0 chrIX 433182 . T C 743 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=4;MQRankSum=1.679;QD=10.61;ReadPosRankSum=1.679;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:93:776,93,0 chrIX 433202 . T C 374.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.597;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=3;MQRankSum=0.433;QD=9.37;ReadPosRankSum=2.946;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,34:40:9:407,9,0 chrIX 433213 . G A 430 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.97;MQ0=3;QD=11.62;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:57:463,57,0 chrIX 433253 . G A 632 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=2;QD=15.05;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:75:665,75,0 chrIX 433284 . T C 1064 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.115;DP=70;Dels=0.00;FS=12.742;HaplotypeScore=5.2693;MLEAC=2;MLEAF=1.00;MQ=39.87;MQ0=4;MQRankSum=1.487;QD=15.20;ReadPosRankSum=2.367;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:2,58:70:99:1097,123,0 chrIX 433359 . C A 967.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.290;DP=207;Dels=0.00;FS=20.326;HaplotypeScore=19.9011;MLEAC=1;MLEAF=0.500;MQ=28.62;MQ0=19;MQRankSum=-2.181;QD=4.67;ReadPosRankSum=2.693;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:114,93:207:99:997,0,1560 chrIX 433442 . A G 36.12 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.940;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=11.20;MQ0=13;MQRankSum=-0.124;QD=1.06;ReadPosRankSum=0.867;SB=-2.606e+01 GT:AD:DP:GQ:PL 0/1:7,27:34:13:66,0,13 chrIX 433471 . G A 105.26 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=15.70;MQ0=19;QD=1.95;SB=-1.541e+02 GT:AD:DP:GQ:PL 1/1:16,37:54:15:138,15,0 chrIX 433484 . A T 614 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.005;DP=68;Dels=0.00;FS=7.659;HaplotypeScore=8.6072;MLEAC=2;MLEAF=1.00;MQ=20.46;MQ0=18;MQRankSum=0.668;QD=9.03;ReadPosRankSum=0.718;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:18,50:68:69:647,69,0 chrIX 433485 . T C 164.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;DP=70;Dels=0.00;FS=33.374;HaplotypeScore=9.5012;MLEAC=1;MLEAF=0.500;MQ=20.46;MQ0=19;MQRankSum=1.321;QD=2.34;ReadPosRankSum=-1.765;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,13:70:99:194,0,261 chrIX 433486 . G A 610 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.322;DP=70;Dels=0.00;FS=7.659;HaplotypeScore=11.4256;MLEAC=2;MLEAF=1.00;MQ=20.46;MQ0=19;MQRankSum=0.668;QD=8.71;ReadPosRankSum=0.767;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:18,52:70:69:643,69,0 chrIX 433500 . A G 536.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.322;DP=122;Dels=0.00;FS=10.408;HaplotypeScore=13.4191;MLEAC=1;MLEAF=0.500;MQ=22.84;MQ0=23;MQRankSum=-1.396;QD=4.39;ReadPosRankSum=2.281;SB=-1.620e+02 GT:AD:DP:GQ:PL 0/1:55,67:122:99:566,0,474 chrIX 433507 . G C 455.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580;DP=137;Dels=0.00;FS=51.153;HaplotypeScore=6.7295;MLEAC=1;MLEAF=0.500;MQ=22.52;MQ0=28;MQRankSum=1.428;QD=3.32;ReadPosRankSum=-1.349;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,38:137:99:485,0,604 chrIX 433560 . T C 753.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;DP=188;Dels=0.00;FS=73.629;HaplotypeScore=63.9368;MLEAC=1;MLEAF=0.500;MQ=21.66;MQ0=22;MQRankSum=-1.671;QD=4.01;ReadPosRankSum=2.696;SB=-1.310e+02 GT:AD:DP:GQ:PL 0/1:69,119:188:99:783,0,547 chrIX 433561 . G T 759.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.947;DP=184;Dels=0.00;FS=92.015;HaplotypeScore=65.5142;MLEAC=1;MLEAF=0.500;MQ=21.65;MQ0=22;MQRankSum=-1.578;QD=4.13;ReadPosRankSum=2.809;SB=-1.400e+02 GT:AD:DP:GQ:PL 0/1:65,119:184:99:789,0,530 chrIX 433563 . C A 766.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.379;DP=183;Dels=0.00;FS=54.104;HaplotypeScore=66.6412;MLEAC=1;MLEAF=0.500;MQ=21.68;MQ0=22;MQRankSum=-1.667;QD=4.19;ReadPosRankSum=3.252;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/1:71,112:183:99:796,0,486 chrIX 433570 . A G 269.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;DP=203;Dels=0.00;FS=95.000;HaplotypeScore=194.3633;MLEAC=1;MLEAF=0.500;MQ=20.64;MQ0=21;MQRankSum=2.747;QD=1.33;ReadPosRankSum=-2.587;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:153,50:203:99:299,0,847 chrIX 433572 . A G 1414 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.612;DP=198;Dels=0.00;FS=6.557;HaplotypeScore=112.3539;MLEAC=2;MLEAF=1.00;MQ=20.60;MQ0=21;MQRankSum=1.012;QD=7.14;ReadPosRankSum=-0.091;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:3,194:198:99:1447,168,0 chrIX 433573 . G C 272.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;DP=206;Dels=0.00;FS=108.772;HaplotypeScore=114.7199;MLEAC=1;MLEAF=0.500;MQ=20.37;MQ0=21;MQRankSum=3.653;QD=1.32;ReadPosRankSum=-3.017;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:156,47:206:99:302,0,849 chrIX 433584 . T C 796.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;DP=207;Dels=0.00;FS=60.705;HaplotypeScore=50.7361;MLEAC=1;MLEAF=0.500;MQ=19.20;MQ0=18;MQRankSum=-0.717;QD=3.85;ReadPosRankSum=4.980;SB=-1.360e+02 GT:AD:DP:GQ:PL 0/1:39,168:207:68:826,0,68 chrIX 433610 . T A 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.853;DP=206;Dels=0.00;FS=54.360;HaplotypeScore=112.2840;MLEAC=1;MLEAF=0.500;MQ=16.91;MQ0=15;MQRankSum=-0.093;QD=0.33;ReadPosRankSum=4.090;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:89,117:206:97:97,0,502 chrIX 433645 . G A 1474.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.153;DP=265;Dels=0.00;FS=2.932;HaplotypeScore=44.7025;MLEAC=1;MLEAF=0.500;MQ=19.33;MQ0=21;MQRankSum=6.178;QD=5.56;ReadPosRankSum=-4.025;SB=-1.750e+02 GT:AD:DP:GQ:PL 0/1:143,121:265:99:1504,0,140 chrIX 433660 . A G 62.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.291;DP=233;Dels=0.00;FS=1.507;HaplotypeScore=6.2147;MLEAC=1;MLEAF=0.500;MQ=19.53;MQ0=24;MQRankSum=-4.189;QD=0.27;ReadPosRankSum=-4.334;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:140,93:233:92:92,0,1578 chrIX 433712 . T A 1634.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;DP=153;Dels=0.00;FS=12.340;HaplotypeScore=7.1416;MLEAC=1;MLEAF=0.500;MQ=21.53;MQ0=23;MQRankSum=1.250;QD=10.68;ReadPosRankSum=-6.111;SB=-1.139e+02 GT:AD:DP:GQ:PL 0/1:30,115:153:35:1664,0,35 chrIX 433724 . A T 1061 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.349;DP=97;Dels=0.00;FS=27.919;HaplotypeScore=20.4422;MLEAC=2;MLEAF=1.00;MQ=18.91;MQ0=30;MQRankSum=2.470;QD=10.94;ReadPosRankSum=2.975;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:10,87:97:99:1094,129,0 chrIX 433737 . G C 157.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;DP=103;Dels=0.00;FS=10.763;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=16.46;MQ0=31;MQRankSum=0.726;QD=1.52;ReadPosRankSum=3.082;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:78,23:103:99:187,0,319 chrIX 433770 . T A 839.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.7251;MLEAC=1;MLEAF=0.500;MQ=16.86;MQ0=26;MQRankSum=-0.384;QD=4.66;ReadPosRankSum=0.333;SB=-2.599e+01 GT:AD:DP:GQ:PL 0/1:45,135:180:99:869,0,107 chrIX 433783 . C T 970 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.988;DP=205;Dels=0.00;FS=27.778;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=16.41;MQ0=29;MQRankSum=1.093;QD=4.73;ReadPosRankSum=2.555;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:34,171:205:36:1003,36,0 chrIX 433814 . T A 220.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.742;DP=259;Dels=0.00;FS=45.952;HaplotypeScore=112.1886;MLEAC=1;MLEAF=0.500;MQ=17.13;MQ0=29;MQRankSum=2.969;QD=0.85;ReadPosRankSum=-5.944;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:207,40:259:99:250,0,1150 chrIX 433819 . A G 321.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.115;DP=268;Dels=0.00;FS=81.841;HaplotypeScore=98.3374;MLEAC=1;MLEAF=0.500;MQ=17.42;MQ0=28;MQRankSum=1.971;QD=1.20;ReadPosRankSum=-2.334;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:196,72:268:99:351,0,1080 chrIX 433823 . C A 374.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.377;DP=244;Dels=0.00;FS=99.048;HaplotypeScore=72.6099;MLEAC=1;MLEAF=0.500;MQ=17.15;MQ0=28;MQRankSum=0.064;QD=1.53;ReadPosRankSum=-0.929;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:159,84:244:99:404,0,855 chrIX 433825 . T C 373.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.413;DP=242;Dels=0.00;FS=72.578;HaplotypeScore=47.2742;MLEAC=1;MLEAF=0.500;MQ=17.11;MQ0=27;MQRankSum=2.590;QD=1.54;ReadPosRankSum=-0.270;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:172,69:242:99:403,0,832 chrIX 433842 . G A 775.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.227;DP=221;Dels=0.00;FS=43.878;HaplotypeScore=91.9299;MLEAC=1;MLEAF=0.500;MQ=18.13;MQ0=28;MQRankSum=7.791;QD=3.51;ReadPosRankSum=1.384;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:137,84:221:99:805,0,279 chrIX 433850 . T C 762.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;DP=212;Dels=0.00;FS=39.998;HaplotypeScore=131.2816;MLEAC=1;MLEAF=0.500;MQ=18.20;MQ0=27;MQRankSum=8.074;QD=3.59;ReadPosRankSum=5.808;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:127,85:212:99:792,0,208 chrIX 433851 . G A 839.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.653;DP=211;Dels=0.00;FS=57.981;HaplotypeScore=150.4165;MLEAC=1;MLEAF=0.500;MQ=18.22;MQ0=27;MQRankSum=6.124;QD=3.98;ReadPosRankSum=4.529;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:101,110:211:99:869,0,176 chrIX 433856 . T C 806.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.799;DP=204;Dels=0.00;FS=60.117;HaplotypeScore=170.7951;MLEAC=1;MLEAF=0.500;MQ=18.52;MQ0=27;MQRankSum=5.679;QD=3.95;ReadPosRankSum=5.212;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:89,111:204:99:836,0,168 chrIX 433868 . T A 702.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;DP=171;Dels=0.00;FS=54.801;HaplotypeScore=125.3293;MLEAC=1;MLEAF=0.500;MQ=18.94;MQ0=27;MQRankSum=6.914;QD=4.11;ReadPosRankSum=6.320;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:79,92:171:99:732,0,129 chrIX 433869 . G T 672.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.970;DP=165;Dels=0.00;FS=41.868;HaplotypeScore=147.6393;MLEAC=1;MLEAF=0.500;MQ=19.24;MQ0=24;MQRankSum=6.713;QD=4.07;ReadPosRankSum=6.108;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:73,91:165:99:702,0,123 chrIX 433870 . T C 684.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.933;DP=163;Dels=0.00;FS=43.775;HaplotypeScore=152.1998;MLEAC=1;MLEAF=0.500;MQ=19.27;MQ0=23;MQRankSum=6.250;QD=4.20;ReadPosRankSum=6.612;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:64,98:163:99:714,0,105 chrIX 433871 . T C 738.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.214;DP=162;Dels=0.00;FS=56.821;HaplotypeScore=139.3340;MLEAC=1;MLEAF=0.500;MQ=19.31;MQ0=23;MQRankSum=3.479;QD=4.56;ReadPosRankSum=4.575;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:48,114:162:99:768,0,102 chrIX 433879 . C T 966 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.328;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=95.6857;MLEAC=2;MLEAF=1.00;MQ=19.96;MQ0=24;MQRankSum=4.882;QD=6.57;ReadPosRankSum=1.942;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:40,93:147:91:999,91,0 chrIX 433882 . T C 941 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.490;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=74.5727;MLEAC=2;MLEAF=1.00;MQ=19.94;MQ0=24;MQRankSum=6.334;QD=6.36;ReadPosRankSum=2.877;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:52,95:148:95:974,95,0 chrIX 433912 . A T 331.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.507;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=17.7404;MLEAC=1;MLEAF=0.500;MQ=21.50;MQ0=7;MQRankSum=1.522;QD=4.19;ReadPosRankSum=-2.059;SB=-1.770e+00 GT:AD:DP:GQ:PL 0/1:10,50:79:10:361,0,10 chrIX 433927 . T C 113.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=17.83;MQ0=18;MQRankSum=0.562;QD=1.66;ReadPosRankSum=0.820;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,45:68:99:143,0,128 chrIX 434222 . T C 2155 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.17;MQ0=8;QD=21.13;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2188,246,0 chrIX 434276 . C T 4058.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=1;QD=21.47;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4058,456,0 chrIX 434368 . G A 2313 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=18.80;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2346,267,0 chrIX 434374 . A G 2179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.090;DP=125;Dels=0.00;FS=2.894;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;MQRankSum=0.730;QD=17.43;ReadPosRankSum=2.410;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:2,121:125:99:2212,252,0 chrIX 434422 . T C 2158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=117;Dels=0.00;FS=2.699;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=-0.909;QD=18.44;ReadPosRankSum=2.386;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:2,113:117:99:2191,243,0 chrIX 434452 . G A 3019 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.87;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3052,342,0 chrIX 434599 . G T 2623 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.33;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2656,288,0 chrIX 434615 . C T 2858 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=22.68;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2891,315,0 chrIX 434723 . C T 4002.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.1252;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.96;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4002,441,0 chrIX 434745 . G C 3589.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.01;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3589,405,0 chrIX 434926 . T A 4124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=177;Dels=0.00;FS=6.452;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-0.984;QD=23.30;ReadPosRankSum=2.408;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4124,459,0 chrIX 435081 . C G 192.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;QD=1.25;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:27:225,27,0 chrIX 435321 . G A 4980.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=22.23;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,221:224:99:4980,570,0 chrIX 435657 . G A 4911.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4911,534,0 chrIX 435753 . G A 4111.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.71;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4111,453,0 chrIX 435856 . C T 3319.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.2869;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.58;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3319,363,0 chrIX 436015 . G A 2884 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.45;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2917,318,0 chrIX 436215 . C T 3388.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9534;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.53;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3388,378,0 chrIX 436329 . C T 2979 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.13;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3012,348,0 chrIX 436394 . C G 3299.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.44;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3299,372,0 chrIX 436465 . A G 2565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.881;QD=21.37;ReadPosRankSum=1.673;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2598,291,0 chrIX 436717 . A G 2083 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.9845;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.11;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2116,243,0 chrIX 436849 . T C 2343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=3.218;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.700;QD=21.90;ReadPosRankSum=1.667;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2376,270,0 chrIX 436977 . C T 2471 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.04;FS=0.000;HaplotypeScore=12.9976;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.06;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2504,279,0 chrIX 437078 . C T 2637 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=23.54;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2670,294,0 chrIX 437271 . G A 2643 filter AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.5146;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=4;QD=18.88;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2676,297,0 chrIX 437293 . G A 2373 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.27;MQ0=0;QD=18.11;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2406,261,0 chrIX 437296 . G T 2317 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.27;MQ0=0;QD=17.69;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2350,264,0 chrIX 437312 . T G 2310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;MQRankSum=-1.581;QD=16.74;ReadPosRankSum=1.707;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2343,273,0 chrIX 437345 . C T 2724 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=2;QD=20.03;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2757,303,0 chrIX 437461 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=0;QD=23.71;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3272,378,0 chrIX 437639 . A G 1351 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=26.11;MQ0=14;MQRankSum=-1.841;QD=15.01;ReadPosRankSum=2.908;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,87:90:99:1384,159,0 chrIX 437667 . G A 1667 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=9;QD=19.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,80:87:99:1700,186,0 chrIX 437685 . C T 1480 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=27.36;MQ0=11;QD=17.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:9,77:87:99:1513,171,0 chrIX 437686 . A G 1515 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=11;MQRankSum=0.337;QD=17.22;ReadPosRankSum=1.597;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:10,78:88:99:1548,174,0 chrIX 437710 . G A 1444 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.843;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=22;MQRankSum=1.685;QD=15.04;ReadPosRankSum=1.498;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:18,78:96:99:1477,162,0 chrIX 437745 . G A 1275 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=26.97;MQ0=22;QD=14.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1308,141,0 chrIX 437755 . C T 1103 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=22;QD=13.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1136,123,0 chrIX 437772 . A T 752 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=19;QD=12.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,57:59:87:785,87,0 chrIX 437810 . T C 214.01 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.44;MQ0=4;QD=14.27;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:27:247,27,0 chrIX 437819 . T C 174.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=2;QD=14.50;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:24:207,24,0 chrIX 437821 . T C 140.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=2;QD=11.67;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:2,10:12:21:173,21,0 chrIX 437828 . C T 78.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=2;QD=9.81;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:2,6:8:12:111,12,0 chrIX 437829 . C T 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=2;QD=9.31;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:2,6:8:12:107,12,0 chrIX 438131 . A C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;QD=2.60;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:52,6,0 chrIX 438138 . C T 73.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.714;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;MQRankSum=1.327;QD=4.32;ReadPosRankSum=0.714;SB=-4.366e-01 GT:AD:DP:GQ:PL 1/1:1,16:17:12:106,12,0 chrIX 438147 . G A 190.01 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;QD=6.79;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:27:223,27,0 chrIX 438150 . T C 255 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.611;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.8936;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;MQRankSum=0.607;QD=7.50;ReadPosRankSum=2.793;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:3,31:34:33:288,33,0 chrIX 438158 . C T 616 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.083;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=6.6725;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;MQRankSum=1.588;QD=12.83;ReadPosRankSum=-0.794;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,47:48:69:649,69,0 chrIX 438162 . G A 579 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=11.13;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:69:612,69,0 chrIX 438164 . C G 618 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=11.88;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,51:52:72:651,72,0 chrIX 438297 . T C 160.03 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.49;MQ0=0;QD=17.78;SB=-2.197e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:24:193,24,0 chrIX 438330 . A G 1631 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=3;QD=22.65;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1664,183,0 chrIX 438399 . G A 683 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=19.3150;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=2;QD=12.89;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:84:716,84,0 chrIX 438410 . A G 123.98 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.905;DP=18;Dels=0.00;FS=1.987;HaplotypeScore=7.8651;MLEAC=1;MLEAF=0.500;MQ=25.00;MQ0=2;MQRankSum=-0.741;QD=6.89;ReadPosRankSum=1.799;SB=-7.272e+01 GT:AD:DP:GQ:PL 0/1:7,11:18:3:153,0,3 chrIX 438417 . T C 36.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=2.9796;MLEAC=2;MLEAF=1.00;MQ=20.14;MQ0=1;QD=5.28;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:69,9,0 chrIX 438432 . G A 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=4.9641;MLEAC=1;MLEAF=0.500;MQ=22.93;MQ0=0;MQRankSum=1.495;QD=1.89;ReadPosRankSum=-0.922;SB=-8.244e-03 GT:AD:DP:GQ:PL 0/1:5,2:7:31:43,0,31 chrIX 438438 . T A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=2.9779;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=1.72;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrIX 438440 . G C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=2.9779;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=1.72;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrIX 438443 . A G 64.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=9.22;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:97,12,0 chrIX 438445 . C T 64.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=9.22;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:97,12,0 chrIX 438449 . T C 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=2.9811;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=8.56;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:101,12,0 chrIX 438451 . A G 60.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=2.9811;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=7.56;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:93,12,0 chrIX 438456 . T G 60.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.589;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=3.9389;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;MQRankSum=-0.572;QD=7.56;ReadPosRankSum=1.589;SB=2.49 GT:AD:DP:GQ:PL 1/1:2,6:8:12:93,12,0 chrIX 438461 . C T 67.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=1.9788;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=8.44;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:100,12,0 chrIX 438482 . G A 42.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=6.14;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:75,9,0 chrIX 438589 . G A 75.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.280;DP=136;Dels=0.00;FS=56.505;HaplotypeScore=3.8936;MLEAC=2;MLEAF=1.00;MQ=11.20;MQ0=22;MQRankSum=4.498;QD=0.55;ReadPosRankSum=0.383;SB=-1.301e+01 GT:AD:DP:GQ:PL 1/1:121,15:136:15:108,15,0 chrIX 438608 . C A 95.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.649;DP=221;Dels=0.00;FS=55.008;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=12.70;MQ0=28;MQRankSum=4.309;QD=0.43;ReadPosRankSum=2.066;SB=-5.901e+01 GT:AD:DP:GQ:PL 0/1:204,17:221:99:125,0,117 chrIX 438609 . G A 112.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DP=223;Dels=0.00;FS=55.008;HaplotypeScore=3.3655;MLEAC=1;MLEAF=0.500;MQ=13.13;MQ0=28;MQRankSum=-4.238;QD=0.50;ReadPosRankSum=-2.124;SB=-7.601e+01 GT:AD:DP:GQ:PL 0/1:17,204:223:99:142,0,122 chrIX 438622 . G T 730 filter AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=12.8703;MLEAC=2;MLEAF=1.00;MQ=16.86;MQ0=28;QD=2.49;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,292:293:93:763,93,0 chrIX 438630 . G A 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;DP=338;Dels=0.00;FS=65.223;HaplotypeScore=8.2436;MLEAC=1;MLEAF=0.500;MQ=17.78;MQ0=28;MQRankSum=3.831;QD=0.04;ReadPosRankSum=1.622;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:320,17:338:43:43,0,735 chrIX 438696 . T C 1322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.684;DP=211;Dels=0.00;FS=21.056;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=1;MQRankSum=12.095;QD=6.27;ReadPosRankSum=4.981;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:116,95:211:99:1355,165,0 chrIX 438718 . T G 711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=1;MQRankSum=1.062;QD=6.35;ReadPosRankSum=1.621;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:1,61:112:87:744,87,0 chrIX 438731 . A G 202.19 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.061;DP=49;Dels=0.00;FS=2.652;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=1;MQRankSum=2.910;QD=4.13;ReadPosRankSum=4.268;SB=-6.319e+01 GT:AD:DP:GQ:PL 1/1:18,31:49:8:234,8,0 chrIX 438765 . A G 123.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=23;Dels=0.00;FS=8.846;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.08;MQ0=0;MQRankSum=0.678;QD=5.35;ReadPosRankSum=1.583;SB=-4.307e+01 GT:AD:DP:GQ:PL 1/1:1,22:23:21:156,21,0 chrIX 438773 . C T 98.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.862;DP=52;Dels=0.00;FS=1.605;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=18.70;MQ0=16;MQRankSum=1.829;QD=1.88;ReadPosRankSum=0.990;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:40,12:52:35:128,0,35 chrIX 438783 . C A 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.138;DP=117;Dels=0.00;FS=3.085;HaplotypeScore=12.7489;MLEAC=1;MLEAF=0.500;MQ=18.88;MQ0=23;MQRankSum=1.800;QD=0.27;ReadPosRankSum=2.385;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:107,9:117:61:61,0,371 chrIX 438797 . C T 1070.34 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.612;DP=209;Dels=0.00;FS=15.277;HaplotypeScore=14.8071;MLEAC=1;MLEAF=0.500;MQ=19.25;MQ0=23;MQRankSum=-3.611;QD=5.12;ReadPosRankSum=-1.441;SB=-1.540e+02 GT:AD:DP:GQ:PL 0/1:10,199:209:8:1100,0,8 chrIX 438831 . A T 362.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.459;DP=495;Dels=0.00;FS=28.088;HaplotypeScore=31.7030;MLEAC=1;MLEAF=0.500;MQ=23.00;MQ0=22;MQRankSum=4.712;QD=0.73;ReadPosRankSum=-1.113;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:421,74:495:99:392,0,3564 chrIX 438856 . G A 1352.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.023;DP=680;Dels=0.00;FS=91.360;HaplotypeScore=81.9829;MLEAC=1;MLEAF=0.500;MQ=24.35;MQ0=22;MQRankSum=6.721;QD=1.99;ReadPosRankSum=-1.816;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:546,126:680:99:1382,0,5092 chrIX 438878 . T A 1429.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.494;DP=696;Dels=0.00;FS=144.628;HaplotypeScore=47.8016;MLEAC=1;MLEAF=0.500;MQ=25.82;MQ0=0;MQRankSum=5.313;QD=2.05;ReadPosRankSum=1.772;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:570,126:696:99:1459,0,6895 chrIX 438909 . A T 1456.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.176;DP=510;Dels=0.00;FS=18.327;HaplotypeScore=50.8282;MLEAC=1;MLEAF=0.500;MQ=27.14;MQ0=0;MQRankSum=-2.989;QD=2.85;ReadPosRankSum=-0.484;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:357,153:510:99:1486,0,5919 chrIX 438951 . A G 3662.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=192;Dels=0.00;FS=19.704;HaplotypeScore=14.0194;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=4;MQRankSum=-2.629;QD=19.07;ReadPosRankSum=2.833;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:3,188:192:99:3662,423,0 chrIX 438952 . T C 121.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.146;DP=183;Dels=0.00;FS=12.870;HaplotypeScore=11.6534;MLEAC=1;MLEAF=0.500;MQ=26.49;MQ0=4;MQRankSum=-2.898;QD=0.66;ReadPosRankSum=2.549;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:146,33:183:99:151,0,2511 chrIX 438953 . A G 119.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.007;DP=177;Dels=0.00;FS=3.394;HaplotypeScore=10.8100;MLEAC=1;MLEAF=0.500;MQ=26.50;MQ0=4;MQRankSum=-3.755;QD=0.67;ReadPosRankSum=3.699;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:147,30:177:99:149,0,2373 chrIX 438972 . G A 187.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;DP=94;Dels=0.00;FS=0.956;HaplotypeScore=23.4697;MLEAC=1;MLEAF=0.500;MQ=25.40;MQ0=4;MQRankSum=-2.683;QD=1.99;ReadPosRankSum=1.730;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:71,23:94:99:217,0,1226 chrIX 438975 . G T 653.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.262;DP=81;Dels=0.00;FS=47.747;HaplotypeScore=15.7696;MLEAC=1;MLEAF=0.500;MQ=25.57;MQ0=4;MQRankSum=1.123;QD=8.06;ReadPosRankSum=-1.472;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:34,47:81:99:683,0,557 chrIX 438993 . A G 1065 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=58;Dels=0.00;FS=2.714;HaplotypeScore=15.3071;MLEAC=2;MLEAF=1.00;MQ=24.32;MQ0=4;MQRankSum=-0.847;QD=18.36;ReadPosRankSum=2.221;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1098,132,0 chrIX 439000 . G T 136.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.162;DP=75;Dels=0.00;FS=7.246;HaplotypeScore=21.3498;MLEAC=1;MLEAF=0.500;MQ=26.29;MQ0=4;MQRankSum=1.711;QD=1.81;ReadPosRankSum=5.909;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,15:75:99:166,0,952 chrIX 439001 . C T 521.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.231;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=23.3165;MLEAC=1;MLEAF=0.500;MQ=26.39;MQ0=4;MQRankSum=2.341;QD=7.04;ReadPosRankSum=-4.057;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:25,49:74:99:551,0,387 chrIX 439005 . G A 100.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.645;DP=94;Dels=0.00;FS=2.249;HaplotypeScore=24.3098;MLEAC=1;MLEAF=0.500;MQ=26.83;MQ0=4;MQRankSum=2.111;QD=1.06;ReadPosRankSum=6.074;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,15:94:99:130,0,1132 chrIX 439006 . T A 1014.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.309;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=22.3232;MLEAC=1;MLEAF=0.500;MQ=26.80;MQ0=4;MQRankSum=2.141;QD=10.90;ReadPosRankSum=-4.103;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:25,68:93:99:1044,0,328 chrIX 439011 . C T 1835 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8612;MLEAC=2;MLEAF=1.00;MQ=26.50;MQ0=5;QD=16.24;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1868,207,0 chrIX 439033 . C A 3739.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.875;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=14.5432;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=14;MQRankSum=0.119;QD=14.27;ReadPosRankSum=1.099;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:27,234:262:99:3739,174,0 chrIX 439034 . A G 3644.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.385;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=14.5432;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=14;MQRankSum=0.531;QD=13.91;ReadPosRankSum=2.448;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:29,233:262:99:3644,166,0 chrIX 439044 . T C 4437.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.478;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=10.1067;MLEAC=2;MLEAF=1.00;MQ=26.61;MQ0=16;MQRankSum=-1.891;QD=14.00;ReadPosRankSum=4.533;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:28,289:317:99:4437,252,0 chrIX 439054 . G A 5498.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=342;Dels=0.00;FS=154.626;HaplotypeScore=1.9559;MLEAC=2;MLEAF=1.00;MQ=26.78;MQ0=16;MQRankSum=4.271;QD=16.08;ReadPosRankSum=0.499;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:23,319:342:99:5498,612,0 chrIX 439055 . C T 5620.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.219;DP=342;Dels=0.00;FS=154.626;HaplotypeScore=1.9559;MLEAC=2;MLEAF=1.00;MQ=26.78;MQ0=16;MQRankSum=4.252;QD=16.43;ReadPosRankSum=0.336;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:23,319:342:99:5620,615,0 chrIX 439081 . T A 2963.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.297;DP=364;Dels=0.00;FS=0.000;HaplotypeScore=9.9679;MLEAC=1;MLEAF=0.500;MQ=26.24;MQ0=19;MQRankSum=5.483;QD=8.14;ReadPosRankSum=2.756;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:145,214:364:99:2993,0,1060 chrIX 439083 . C A 2894.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.178;DP=367;Dels=0.00;FS=7.889;HaplotypeScore=5.4787;MLEAC=1;MLEAF=0.500;MQ=26.18;MQ0=21;MQRankSum=4.809;QD=7.89;ReadPosRankSum=2.562;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:148,219:367:99:2924,0,905 chrIX 439084 . G T 2982.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.105;DP=369;Dels=0.00;FS=7.897;HaplotypeScore=5.4787;MLEAC=1;MLEAF=0.500;MQ=26.12;MQ0=22;MQRankSum=5.029;QD=8.08;ReadPosRankSum=2.487;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:149,220:369:99:3012,0,1009 chrIX 439087 . A T 2989.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.434;DP=378;Dels=0.00;FS=7.927;HaplotypeScore=10.7440;MLEAC=1;MLEAF=0.500;MQ=26.06;MQ0=25;MQRankSum=4.611;QD=7.91;ReadPosRankSum=2.195;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:158,220:378:99:3019,0,1229 chrIX 439088 . A T 2888.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;DP=379;Dels=0.00;FS=7.929;HaplotypeScore=11.5327;MLEAC=1;MLEAF=0.500;MQ=26.07;MQ0=25;MQRankSum=4.385;QD=7.62;ReadPosRankSum=1.861;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:160,219:379:99:2918,0,1239 chrIX 439095 . A G 2123.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.870;DP=347;Dels=0.00;FS=5.999;HaplotypeScore=8.9207;MLEAC=1;MLEAF=0.500;MQ=25.43;MQ0=31;MQRankSum=4.165;QD=6.12;ReadPosRankSum=4.571;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:177,169:347:99:2153,0,1372 chrIX 439096 . G A 2141.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.400;DP=339;Dels=0.00;FS=5.940;HaplotypeScore=2.6660;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=31;MQRankSum=4.989;QD=6.32;ReadPosRankSum=3.423;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:170,169:339:99:2171,0,1269 chrIX 439097 . G A 2316.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.486;DP=339;Dels=0.00;FS=5.940;HaplotypeScore=2.6660;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=31;MQRankSum=5.297;QD=6.83;ReadPosRankSum=2.901;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:170,169:339:99:2346,0,1291 chrIX 439100 . A G 2374.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.579;DP=344;Dels=0.00;FS=5.899;HaplotypeScore=1.8773;MLEAC=1;MLEAF=0.500;MQ=25.22;MQ0=32;MQRankSum=3.195;QD=6.90;ReadPosRankSum=1.199;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:169,173:344:99:2404,0,1373 chrIX 439126 . A G 1579.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.715;DP=197;Dels=0.00;FS=31.740;HaplotypeScore=15.1128;MLEAC=1;MLEAF=0.500;MQ=24.63;MQ0=21;MQRankSum=4.606;QD=8.02;ReadPosRankSum=-0.183;SB=-8.921e+00 GT:AD:DP:GQ:PL 0/1:50,147:197:56:1609,0,56 chrIX 439132 . A G 1379.10 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.843;DP=174;Dels=0.01;FS=2.306;HaplotypeScore=12.9514;MLEAC=2;MLEAF=1.00;MQ=24.34;MQ0=17;MQRankSum=3.293;QD=7.93;ReadPosRankSum=-0.431;SB=-1.051e+02 GT:AD:DP:GQ:PL 1/1:27,146:173:19:1412,19,0 chrIX 439139 . C T 787.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;DP=138;Dels=0.00;FS=32.876;HaplotypeScore=8.8033;MLEAC=1;MLEAF=0.500;MQ=23.21;MQ0=17;MQRankSum=2.938;QD=5.70;ReadPosRankSum=-3.620;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,92:138:99:817,0,168 chrIX 439150 . A G 588.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;DP=96;Dels=0.00;FS=27.673;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.12;MQ0=17;MQRankSum=3.392;QD=6.13;ReadPosRankSum=-4.185;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,50:96:99:618,0,169 chrIX 439158 . T G 843 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.6504;MLEAC=2;MLEAF=1.00;MQ=20.34;MQ0=17;QD=10.28;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:876,108,0 chrIX 439163 . A T 575.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.031;DP=75;Dels=0.00;FS=45.746;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=20.54;MQ0=17;MQRankSum=0.716;QD=7.67;ReadPosRankSum=-1.719;SB=-1.202e+01 GT:AD:DP:GQ:PL 0/1:24,51:75:35:605,0,35 chrIX 439176 . T C 16.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;DP=56;Dels=0.00;FS=49.821;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.27;MQ0=15;MQRankSum=-1.407;QD=0.29;ReadPosRankSum=1.659;SB=0.325 GT:AD:DP:GQ:PL 0/1:36,20:56:46:46,0,323 chrIX 439183 . T C 197.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DP=35;Dels=0.00;FS=41.289;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.28;MQ0=8;MQRankSum=0.780;QD=5.63;ReadPosRankSum=-0.531;SB=-1.102e+01 GT:AD:DP:GQ:PL 0/1:13,22:35:58:227,0,58 chrIX 439186 . C T 320 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=9.7340;MLEAC=2;MLEAF=1.00;MQ=19.66;MQ0=6;QD=10.67;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:45:353,45,0 chrIX 439194 . T A 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;DP=19;Dels=0.00;FS=2.218;HaplotypeScore=9.7271;MLEAC=1;MLEAF=0.500;MQ=22.89;MQ0=1;MQRankSum=0.328;QD=1.21;ReadPosRankSum=2.201;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:13,6:19:53:53,0,174 chrIX 439198 . A G 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;DP=19;Dels=0.00;FS=31.547;HaplotypeScore=10.7005;MLEAC=1;MLEAF=0.500;MQ=22.89;MQ0=1;MQRankSum=-2.760;QD=1.90;ReadPosRankSum=-1.380;SB=0.259 GT:AD:DP:GQ:PL 0/1:13,6:19:66:66,0,178 chrIX 439202 . T C 120.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;DP=18;Dels=0.00;FS=33.858;HaplotypeScore=13.0665;MLEAC=1;MLEAF=0.500;MQ=22.20;MQ0=0;MQRankSum=2.532;QD=6.67;ReadPosRankSum=3.154;SB=-1.400e+01 GT:AD:DP:GQ:PL 0/1:8,10:18:51:150,0,51 chrIX 439208 . C T 202 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=21.00;MQ0=1;QD=13.47;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:30:235,30,0 chrIX 439235 . A G 134.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=8.6826;MLEAC=2;MLEAF=1.00;MQ=14.62;MQ0=7;MQRankSum=-0.788;QD=3.35;ReadPosRankSum=1.523;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:1,39:40:21:167,21,0 chrIX 439236 . G A 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.851;DP=40;Dels=0.03;FS=10.891;HaplotypeScore=8.6826;MLEAC=1;MLEAF=0.500;MQ=14.62;MQ0=7;MQRankSum=1.371;QD=0.55;ReadPosRankSum=0.370;SB=0.015 GT:AD:DP:GQ:PL 0/1:31,8:39:52:52,0,90 chrIX 439241 . T C 89.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.111;DP=41;Dels=0.00;FS=9.342;HaplotypeScore=8.6826;MLEAC=1;MLEAF=0.500;MQ=15.14;MQ0=7;MQRankSum=3.189;QD=2.17;ReadPosRankSum=-0.780;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:24,17:41:38:119,0,38 chrIX 439242 . G A 41.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;DP=44;Dels=0.00;FS=10.889;HaplotypeScore=9.4712;MLEAC=1;MLEAF=0.500;MQ=15.49;MQ0=7;MQRankSum=2.887;QD=0.93;ReadPosRankSum=-0.321;SB=0.048 GT:AD:DP:GQ:PL 0/1:33,9:44:71:71,0,90 chrIX 439275 . G A 1328.79 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.400;DP=279;Dels=0.00;FS=2.106;HaplotypeScore=120.6030;MLEAC=2;MLEAF=1.00;MQ=18.92;MQ0=24;MQRankSum=-1.610;QD=4.76;ReadPosRankSum=3.230;SB=-1.328e+02 GT:AD:DP:GQ:PL 1/1:32,246:279:10:1361,10,0 chrIX 439278 . A G 448.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.711;DP=300;Dels=0.00;FS=27.482;HaplotypeScore=127.5272;MLEAC=1;MLEAF=0.500;MQ=18.68;MQ0=25;MQRankSum=-4.419;QD=1.49;ReadPosRankSum=-2.530;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:100,200:300:99:478,0,1110 chrIX 439281 . T G 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.645;DP=334;Dels=0.00;FS=2.855;HaplotypeScore=118.2627;MLEAC=1;MLEAF=0.500;MQ=18.55;MQ0=27;MQRankSum=-2.992;QD=0.16;ReadPosRankSum=2.036;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:231,103:334:82:82,0,1581 chrIX 439295 . G A 442.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.699;DP=437;Dels=0.00;FS=17.242;HaplotypeScore=43.2690;MLEAC=1;MLEAF=0.500;MQ=18.67;MQ0=33;MQRankSum=-1.193;QD=1.01;ReadPosRankSum=-1.071;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:293,143:437:99:472,0,1733 chrIX 439323 . A G 3217.04 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.073;DP=624;Dels=0.00;FS=0.000;HaplotypeScore=27.8753;MLEAC=2;MLEAF=1.00;MQ=19.36;MQ0=47;MQRankSum=0.352;QD=5.16;ReadPosRankSum=0.862;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:3,595:624:99:3250,401,0 chrIX 439331 . C T 3505.01 filter AC=2;AF=1.00;AN=2;DP=672;Dels=0.00;FS=0.000;HaplotypeScore=61.4406;MLEAC=2;MLEAF=1.00;MQ=19.67;MQ0=48;QD=5.22;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,672:672:99:3505,404,0 chrIX 439392 . G A 247.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;DP=358;Dels=0.00;FS=15.152;HaplotypeScore=533.7093;MLEAC=1;MLEAF=0.500;MQ=21.91;MQ0=20;MQRankSum=-0.806;QD=0.69;ReadPosRankSum=2.567;SB=-2.504e+01 GT:AD:DP:GQ:PL 0/1:297,61:358:99:277,0,240 chrIX 439396 . G A 64.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.854;DP=362;Dels=0.00;FS=4.670;HaplotypeScore=532.6084;MLEAC=1;MLEAF=0.500;MQ=21.86;MQ0=20;MQRankSum=6.646;QD=0.18;ReadPosRankSum=4.886;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:278,84:362:94:94,0,746 chrIX 439435 . C T 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.771;DP=160;Dels=0.00;FS=36.585;HaplotypeScore=204.7385;MLEAC=1;MLEAF=0.500;MQ=22.90;MQ0=5;MQRankSum=4.370;QD=0.31;ReadPosRankSum=0.497;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,51:160:80:80,0,377 chrIX 439442 . G T 147.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.847;DP=146;Dels=0.00;FS=21.208;HaplotypeScore=273.3571;MLEAC=1;MLEAF=0.500;MQ=22.86;MQ0=4;MQRankSum=-1.414;QD=1.01;ReadPosRankSum=0.967;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,27:146:99:177,0,227 chrIX 439447 . C T 72.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=226.8459;MLEAC=1;MLEAF=0.500;MQ=22.53;MQ0=4;MQRankSum=4.107;QD=0.61;ReadPosRankSum=1.750;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,56:118:99:102,0,208 chrIX 439449 . C A 326.02 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.160;DP=122;Dels=0.00;FS=281.658;HaplotypeScore=243.5298;MLEAC=2;MLEAF=1.00;MQ=22.75;MQ0=4;MQRankSum=5.372;QD=2.67;ReadPosRankSum=1.466;SB=-3.390e-02 GT:AD:DP:GQ:PL 1/1:31,85:122:25:359,25,0 chrIX 439451 . A C 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;DP=124;Dels=0.00;FS=112.492;HaplotypeScore=246.3482;MLEAC=1;MLEAF=0.500;MQ=22.87;MQ0=4;MQRankSum=4.953;QD=0.45;ReadPosRankSum=2.059;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,56:124:86:86,0,253 chrIX 439455 . G A 123.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;DP=130;Dels=0.00;FS=49.763;HaplotypeScore=118.7087;MLEAC=1;MLEAF=0.500;MQ=23.08;MQ0=4;MQRankSum=1.045;QD=0.95;ReadPosRankSum=1.864;SB=-3.190e+02 GT:AD:DP:GQ:PL 0/1:34,90:130:99:153,0,181 chrIX 439463 . T G 304 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.599;DP=127;Dels=0.00;FS=28.826;HaplotypeScore=106.2762;MLEAC=2;MLEAF=1.00;MQ=21.95;MQ0=4;MQRankSum=2.319;QD=2.39;ReadPosRankSum=6.599;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:17,110:127:39:337,39,0 chrIX 439465 . A G 428 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.05;FS=0.000;HaplotypeScore=162.9121;MLEAC=2;MLEAF=1.00;MQ=21.33;MQ0=4;QD=2.91;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,121:140:57:461,57,0 chrIX 439467 . A T 98.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.191;DP=180;Dels=0.04;FS=83.502;HaplotypeScore=158.7379;MLEAC=1;MLEAF=0.500;MQ=20.44;MQ0=10;MQRankSum=-1.778;QD=0.54;ReadPosRankSum=1.889;SB=-3.440e+02 GT:AD:DP:GQ:PL 0/1:84,80:173:99:128,0,295 chrIX 439497 . G A 2964.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.328;DP=684;Dels=0.01;FS=95.266;HaplotypeScore=491.7570;MLEAC=1;MLEAF=0.500;MQ=20.95;MQ0=27;MQRankSum=-0.186;QD=4.33;ReadPosRankSum=7.538;SB=-7.600e+02 GT:AD:DP:GQ:PL 0/1:435,232:680:99:2994,0,3015 chrIX 439505 . G C 4561.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.241;DP=959;Dels=0.00;FS=18.712;HaplotypeScore=489.4474;MLEAC=1;MLEAF=0.500;MQ=19.91;MQ0=33;MQRankSum=2.103;QD=4.76;ReadPosRankSum=3.469;SB=-1.934e+03 GT:AD:DP:GQ:PL 0/1:586,357:959:99:4561,0,3747 chrIX 439538 . G A 4474.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.971;DP=1000;DS;Dels=0.00;FS=19.354;HaplotypeScore=152.1189;MLEAC=1;MLEAF=0.500;MQ=20.48;MQ0=29;MQRankSum=3.960;QD=4.47;ReadPosRankSum=4.105;SB=-1.873e+03 GT:AD:DP:GQ:PL 0/1:660,332:1000:99:4474,0,6200 chrIX 439542 . A G 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.789;DP=1000;DS;Dels=0.00;FS=68.815;HaplotypeScore=370.1468;MLEAC=1;MLEAF=0.500;MQ=20.49;MQ0=28;MQRankSum=-0.216;QD=0.05;ReadPosRankSum=-0.415;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:882,106:1000:80:80,0,10918 chrIX 439551 . T C 5684.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.168;DP=1000;DS;Dels=0.00;FS=4.670;HaplotypeScore=332.2660;MLEAC=1;MLEAF=0.500;MQ=20.48;MQ0=27;MQRankSum=2.838;QD=5.68;ReadPosRankSum=0.880;SB=-1.896e+03 GT:AD:DP:GQ:PL 0/1:613,387:1000:99:5684,0,4004 chrIX 439565 . C G 1364.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.274;DP=893;DS;Dels=0.00;FS=0.654;HaplotypeScore=271.8949;MLEAC=1;MLEAF=0.500;MQ=20.64;MQ0=20;MQRankSum=8.357;QD=1.53;ReadPosRankSum=-4.653;SB=-6.310e+02 GT:AD:DP:GQ:PL 0/1:727,164:893:99:1394,0,8926 chrIX 439573 . T C 5499.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.530;DP=854;DS;Dels=0.00;FS=134.744;HaplotypeScore=232.7217;MLEAC=1;MLEAF=0.500;MQ=20.34;MQ0=15;MQRankSum=8.552;QD=6.44;ReadPosRankSum=-6.899;SB=-2.420e+03 GT:AD:DP:GQ:PL 0/1:452,399:854:99:5499,0,4233 chrIX 439590 . T G 2066.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.857;DP=716;DS;Dels=0.00;FS=172.567;HaplotypeScore=74.7498;MLEAC=1;MLEAF=0.500;MQ=20.44;MQ0=18;MQRankSum=-5.265;QD=2.89;ReadPosRankSum=-1.234;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:445,259:716:99:2096,0,6149 chrIX 439592 . G C 2045.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;DP=680;DS;Dels=0.00;FS=220.084;HaplotypeScore=103.3249;MLEAC=1;MLEAF=0.500;MQ=20.51;MQ0=16;MQRankSum=-7.294;QD=3.01;ReadPosRankSum=-1.594;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:428,230:680:99:2075,0,6057 chrIX 439608 . T C 6480.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.360;DP=378;DS;Dels=0.00;FS=10.220;HaplotypeScore=85.1539;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=9;MQRankSum=-1.711;QD=17.14;ReadPosRankSum=4.703;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:31,344:378:99:6480,677,0 chrIX 439616 . G A 257.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.115;DP=185;DS;Dels=0.00;FS=19.781;HaplotypeScore=45.7487;MLEAC=1;MLEAF=0.500;MQ=23.77;MQ0=8;MQRankSum=1.735;QD=1.39;ReadPosRankSum=-6.511;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,44:185:99:287,0,2252 chrIX 439626 . G A 1661.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.700;DP=172;DS;Dels=0.00;FS=2.314;HaplotypeScore=29.6668;MLEAC=1;MLEAF=0.500;MQ=24.33;MQ0=6;MQRankSum=-2.092;QD=9.66;ReadPosRankSum=6.691;SB=-3.300e+02 GT:AD:DP:GQ:PL 0/1:55,117:172:99:1691,0,534 chrIX 439639 . T C 327.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.587;DP=180;DS;Dels=0.00;FS=8.869;HaplotypeScore=57.7331;MLEAC=1;MLEAF=0.500;MQ=24.18;MQ0=5;MQRankSum=-5.635;QD=1.82;ReadPosRankSum=-2.557;SB=-1.650e+02 GT:AD:DP:GQ:PL 0/1:135,44:180:99:357,0,2098 chrIX 439670 . G A 116.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.267;DP=165;Dels=0.01;FS=26.007;HaplotypeScore=120.6401;MLEAC=1;MLEAF=0.500;MQ=23.15;MQ0=4;MQRankSum=1.468;QD=0.70;ReadPosRankSum=-1.594;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:131,33:164:99:146,0,1592 chrIX 439671 . G A 116.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.745;DP=166;Dels=0.02;FS=26.168;HaplotypeScore=118.8576;MLEAC=1;MLEAF=0.500;MQ=23.11;MQ0=4;MQRankSum=0.838;QD=0.70;ReadPosRankSum=-1.088;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,33:162:99:146,0,1579 chrIX 439672 . G C 804.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.630;DP=169;Dels=0.02;FS=76.300;HaplotypeScore=119.8470;MLEAC=1;MLEAF=0.500;MQ=23.06;MQ0=4;MQRankSum=-0.059;QD=4.76;ReadPosRankSum=-0.250;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,70:165:99:834,0,948 chrIX 439685 . C A 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.500;DP=336;Dels=0.01;FS=4.223;HaplotypeScore=184.0602;MLEAC=2;MLEAF=1.00;MQ=21.63;MQ0=0;MQRankSum=0.786;QD=8.02;ReadPosRankSum=1.292;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:8,325:333:99:2729,292,0 chrIX 439692 . A T 1369.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;DP=418;Dels=0.00;FS=46.552;HaplotypeScore=121.4801;MLEAC=1;MLEAF=0.500;MQ=21.31;MQ0=0;MQRankSum=-1.142;QD=3.28;ReadPosRankSum=2.432;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:188,184:418:99:1399,0,1636 chrIX 439700 . T G 5453.01 filter AC=2;AF=1.00;AN=2;DP=514;Dels=0.00;FS=0.000;HaplotypeScore=199.7775;MLEAC=2;MLEAF=1.00;MQ=20.79;MQ0=0;QD=10.61;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,511:514:99:5453,699,0 chrIX 439718 . G A 1711.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=14.432;DP=772;Dels=0.00;FS=4.809;HaplotypeScore=356.4507;MLEAC=1;MLEAF=0.500;MQ=20.83;MQ0=0;MQRankSum=4.622;QD=2.22;ReadPosRankSum=-8.176;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:536,236:772:99:1741,0,4650 chrIX 439722 . G A 809.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.788;DP=795;Dels=0.00;FS=3.600;HaplotypeScore=368.9831;MLEAC=1;MLEAF=0.500;MQ=20.72;MQ0=0;MQRankSum=-0.094;QD=1.02;ReadPosRankSum=3.683;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:689,106:795:99:839,0,3558 chrIX 439724 . A G 436.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.163;DP=796;Dels=0.00;FS=3.605;HaplotypeScore=361.3668;MLEAC=1;MLEAF=0.500;MQ=20.70;MQ0=0;MQRankSum=0.301;QD=0.55;ReadPosRankSum=5.501;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:690,106:796:99:466,0,6175 chrIX 439728 . A G 8799.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.839;DP=812;Dels=0.00;FS=0.000;HaplotypeScore=329.6701;MLEAC=2;MLEAF=1.00;MQ=20.64;MQ0=0;MQRankSum=-1.182;QD=10.84;ReadPosRankSum=2.609;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:5,807:812:99:8799,1135,0 chrIX 439739 . A G 4674.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.462;DP=680;Dels=0.00;FS=4.317;HaplotypeScore=863.9304;MLEAC=1;MLEAF=0.500;MQ=20.05;MQ0=0;MQRankSum=-0.871;QD=6.87;ReadPosRankSum=-2.214;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:140,539:680:99:4674,0,902 chrIX 439746 . G T 644.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;DP=640;Dels=0.00;FS=0.000;HaplotypeScore=553.0125;MLEAC=1;MLEAF=0.500;MQ=19.54;MQ0=0;MQRankSum=-2.082;QD=1.01;ReadPosRankSum=-1.824;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:301,70:640:99:674,0,1388 chrIX 439747 . A G 323.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.743;DP=667;Dels=0.00;FS=0.000;HaplotypeScore=553.0125;MLEAC=1;MLEAF=0.500;MQ=19.45;MQ0=0;MQRankSum=2.039;QD=0.48;ReadPosRankSum=-1.025;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:452,69:667:99:353,0,3635 chrIX 439750 . A T 7109.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.843;DP=672;Dels=0.00;FS=18.287;HaplotypeScore=293.5369;MLEAC=2;MLEAF=1.00;MQ=19.33;MQ0=0;MQRankSum=0.372;QD=10.58;ReadPosRankSum=3.697;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:5,667:672:99:7109,929,0 chrIX 439768 . G A 273.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.263;DP=701;Dels=0.00;FS=8.772;HaplotypeScore=284.8621;MLEAC=1;MLEAF=0.500;MQ=19.29;MQ0=0;MQRankSum=-0.905;QD=0.39;ReadPosRankSum=1.818;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:608,93:701:99:303,0,5417 chrIX 439771 . G T 2088.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.343;DP=676;Dels=0.00;FS=0.000;HaplotypeScore=924.9635;MLEAC=1;MLEAF=0.500;MQ=19.24;MQ0=0;MQRankSum=7.347;QD=3.09;ReadPosRankSum=2.507;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:428,248:676:99:2118,0,3544 chrIX 439772 . A T 438.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;DP=678;Dels=0.00;FS=0.000;HaplotypeScore=923.9901;MLEAC=1;MLEAF=0.500;MQ=19.23;MQ0=0;MQRankSum=1.636;QD=0.65;ReadPosRankSum=2.564;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:499,92:678:99:468,0,4373 chrIX 439785 . T C 1297.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.268;DP=453;Dels=0.00;FS=0.000;HaplotypeScore=1142.0298;MLEAC=1;MLEAF=0.500;MQ=19.94;MQ0=0;MQRankSum=-1.888;QD=2.86;ReadPosRankSum=-1.823;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:318,135:453:99:1327,0,587 chrIX 439786 . T C,G 2176.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.093;DP=445;Dels=0.00;FS=0.000;HaplotypeScore=1211.0103;MLEAC=1,1;MLEAF=0.500,0.500;MQ=19.85;MQ0=0;MQRankSum=4.491;QD=4.89;ReadPosRankSum=-1.072;SB=29.99 GT:AD:DP:GQ:PL 1/2:174,136,135:445:99:2236,1443,1341,793,0,575 chrIX 439794 . A G 4194.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.305;DP=430;Dels=0.00;FS=0.000;HaplotypeScore=224.9757;MLEAC=2;MLEAF=1.00;MQ=19.59;MQ0=0;MQRankSum=-0.569;QD=9.75;ReadPosRankSum=1.069;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:34,396:430:99:4194,177,0 chrIX 439796 . G A,T 2797.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=8.339;DP=427;Dels=0.00;FS=0.000;HaplotypeScore=98.0876;MLEAC=1,1;MLEAF=0.500,0.500;MQ=19.61;MQ0=0;MQRankSum=-8.010;QD=6.55;ReadPosRankSum=0.787;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:59,187,181:427:99:2857,969,1433,1216,0,1724 chrIX 439811 . G A 1156.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.701;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=402.6495;MLEAC=1;MLEAF=0.500;MQ=19.10;MQ0=0;MQRankSum=-3.006;QD=3.74;ReadPosRankSum=-5.039;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,167:309:99:1186,0,907 chrIX 439819 . G A 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.492;DP=244;Dels=0.03;FS=0.000;HaplotypeScore=587.4736;MLEAC=1;MLEAF=0.500;MQ=20.53;MQ0=0;MQRankSum=-1.407;QD=0.12;ReadPosRankSum=-2.112;SB=-1.950e+02 GT:AD:DP:GQ:PL 0/1:206,21:237:59:59,0,976 chrIX 439884 . T G 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=19.8910;MLEAC=1;MLEAF=0.500;MQ=23.13;MQ0=0;MQRankSum=0.091;QD=0.73;ReadPosRankSum=-1.828;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,10:60:74:74,0,617 chrIX 439886 . T G 437.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.893;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=17.9580;MLEAC=1;MLEAF=0.500;MQ=22.89;MQ0=0;MQRankSum=0.886;QD=8.92;ReadPosRankSum=1.477;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,29:49:99:467,0,111 chrM 818 . C A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.93;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:55,6,0 chrM 13976 . A G 22470.01 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=86.2242;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.47;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,977:1000:99:22470,2644,0 chrM 14205 . T A 21056.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.151;DP=1000;DS;Dels=0.00;FS=15.399;HaplotypeScore=80.6544;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.415;QD=21.06;ReadPosRankSum=3.347;SB=-1.021e+04 GT:AD:DP:GQ:PL 1/1:4,996:1000:99:21056,2331,0 chrM 15478 . C A 24313.01 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=54.3940;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.31;SB=-1.107e+04 GT:AD:DP:GQ:PL 1/1:0,994:1000:99:24313,2653,0 chrM 15898 . G A 10087.01 filter AC=2;AF=1.00;AN=2;DP=458;Dels=0.00;FS=0.000;HaplotypeScore=27.8301;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.02;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,454:458:99:10087,1113,0 chrM 15973 . C T 10345.01 filter AC=2;AF=1.00;AN=2;DP=446;Dels=0.00;FS=0.000;HaplotypeScore=22.1186;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.20;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,445:446:99:10345,1234,0 chrM 16444 . T C 10251.01 filter AC=2;AF=1.00;AN=2;DP=512;Dels=0.00;FS=0.000;HaplotypeScore=34.7517;MLEAC=2;MLEAF=1.00;MQ=37.68;MQ0=0;QD=20.02;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,502:512:99:10251,1184,0 chrM 19280 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrM 19330 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrM 19332 . G A 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=0;QD=13.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:58,6,0 chrM 20407 . T C 42.97 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.86;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:75,9,0 chrM 20934 . T G 18303.01 filter AC=2;AF=1.00;AN=2;DP=919;DS;Dels=0.00;FS=0.000;HaplotypeScore=54.9782;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=19.92;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,906:919:99:18303,2234,0 chrM 22604 . G A 679 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.58;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:712,78,0 chrM 23178 . A T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=7.93;ReadPosRankSum=-0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,2:3:6:55,6,0 chrM 23606 . A C 444 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.67;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:51:477,51,0 chrM 23618 . A G 406 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.30;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:51:439,51,0 chrM 23621 . C T 418 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.00;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:48:451,48,0 chrM 23623 . T C 418 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.00;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:48:451,48,0 chrM 26386 . T C 11535.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=479;Dels=0.00;FS=0.000;HaplotypeScore=18.9675;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;MQRankSum=-1.298;QD=24.08;ReadPosRankSum=1.725;SB=-4.984e+03 GT:AD:DP:GQ:PL 1/1:1,478:479:99:11535,1305,0 chrM 26539 . C T 8324.01 filter AC=2;AF=1.00;AN=2;DP=377;Dels=0.00;FS=0.000;HaplotypeScore=17.5191;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.08;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,371:377:99:8324,897,0 chrM 26570 . A G 4873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-1.021;QD=20.05;ReadPosRankSum=2.930;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:3,240:243:99:4873,590,0 chrM 26571 . A C 5071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-0.245;QD=21.13;ReadPosRankSum=1.718;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:1,239:240:99:5071,588,0 chrM 26581 . T C 4042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=242;Dels=0.00;FS=13.028;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-1.502;QD=16.70;ReadPosRankSum=1.718;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:1,240:242:99:4042,531,0 chrM 26709 . A T 2307 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.737;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=24.3944;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.646;QD=18.31;ReadPosRankSum=4.717;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,118:126:99:2340,246,0 chrM 28837 . C T 24760.01 filter AC=2;AF=1.00;AN=2;DP=993;DS;Dels=0.00;FS=0.000;HaplotypeScore=50.4155;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.93;SB=-4.030e+03 GT:AD:DP:GQ:PL 1/1:0,992:993:99:24760,2702,0 chrM 29015 . T A 20402.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.328;DP=983;DS;Dels=0.00;FS=19.590;HaplotypeScore=16.9114;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.142;QD=20.75;ReadPosRankSum=3.758;SB=-9.598e+03 GT:AD:DP:GQ:PL 1/1:7,976:983:99:20402,2213,0 chrM 29017 . C T 19820.01 filter AC=2;AF=1.00;AN=2;DP=986;DS;Dels=0.00;FS=0.000;HaplotypeScore=13.2963;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.10;SB=-8.977e+03 GT:AD:DP:GQ:PL 1/1:0,976:982:99:19820,2214,0 chrM 29091 . C G 19954.01 filter AC=2;AF=1.00;AN=2;DP=957;DS;Dels=0.00;FS=0.000;HaplotypeScore=71.9601;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.85;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,947:957:99:19954,2146,0 chrM 29134 . A C 10196.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.395;DP=781;DS;Dels=0.00;FS=0.000;HaplotypeScore=78.7652;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.058;QD=13.06;ReadPosRankSum=6.832;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:16,765:781:99:10196,1344,0 chrM 31850 . T C 1884 filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.0632;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,98:101:99:1917,225,0 chrM 36957 . G C 187.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.310;DP=96;DS;Dels=0.00;FS=7.601;HaplotypeScore=73.0246;MLEAC=1;MLEAF=0.500;MQ=31.90;MQ0=21;MQRankSum=-5.385;QD=1.95;ReadPosRankSum=-2.677;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,27:96:99:217,0,419 chrM 36960 . A G 77.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.977;DP=25;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=13;MQRankSum=-0.380;QD=3.09;ReadPosRankSum=0.689;SB=2.74 GT:AD:DP:GQ:PL 1/1:20,5:25:15:110,15,0 chrM 40573 . T A 106.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.123;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.86;MQ0=0;MQRankSum=0.163;QD=0.52;ReadPosRankSum=-4.793;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:8,195:203:99:136,0,176 chrM 40575 . T C 157.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.547;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.86;MQ0=0;MQRankSum=-0.279;QD=0.77;ReadPosRankSum=-4.615;SB=-3.800e+02 GT:AD:DP:GQ:PL 0/1:195,8:203:99:187,0,121 chrM 40580 . C T 79.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.620;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.86;MQ0=0;MQRankSum=0.292;QD=0.39;ReadPosRankSum=4.787;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:8,195:203:99:109,0,188 chrM 40581 . T C 91.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.793;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.86;MQ0=0;MQRankSum=-0.500;QD=0.45;ReadPosRankSum=4.787;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:8,195:203:99:121,0,195 chrM 40837 . A T 474 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.9628;MLEAC=2;MLEAF=1.00;MQ=31.02;MQ0=0;QD=9.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,18:50:54:507,54,0 chrM 40838 . A G 420 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=10.8715;MLEAC=2;MLEAF=1.00;MQ=33.25;MQ0=0;QD=5.12;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:54:453,54,0 chrM 40840 . G T 170.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;DP=135;Dels=0.00;FS=13.963;HaplotypeScore=10.8715;MLEAC=1;MLEAF=0.500;MQ=38.06;MQ0=0;MQRankSum=0.475;QD=1.26;ReadPosRankSum=-5.896;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,107:135:99:200,0,375 chrM 41442 . A G 556 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.20;MQ0=0;QD=16.35;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:63:589,63,0 chrM 41647 . A T 13037.01 filter AC=2;AF=1.00;AN=2;DP=516;Dels=0.00;FS=0.000;HaplotypeScore=42.3549;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.27;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,516:516:99:13037,1432,0 chrM 43514 . G C 13940.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=775;Dels=0.00;FS=0.000;HaplotypeScore=26.6768;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.714;QD=17.99;ReadPosRankSum=1.705;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:1,772:775:99:13940,1695,0 chrM 43686 . T A 52.97 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.24;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:85,9,0 chrM 44382 . G A 395 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.79;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:48:428,48,0 chrM 44400 . A T 408 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.67;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:48:441,48,0 chrM 44508 . C T 248 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=17.71;SB=-1.032e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:33:281,33,0 chrM 45688 . C T 63.51 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:12:96,12,0 chrM 51046 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrM 51084 . G T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrM 58551 . A T 49.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=7.14;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:82,9,0 chrM 59794 . A T 21205.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.707;DP=1000;DS;Dels=0.00;FS=25.771;HaplotypeScore=95.8638;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=-0.332;QD=21.21;ReadPosRankSum=3.314;SB=-5.511e+03 GT:AD:DP:GQ:PL 1/1:4,996:1000:99:21205,2339,0 chrM 60577 . A T 446 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.55;MQ0=0;QD=8.26;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:54:479,54,0 chrM 60578 . A T 467 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.42;MQ0=0;QD=6.49;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:57:500,57,0 chrM 61881 . G A 333 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=10.1482;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=0.33;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,997:1000:42:366,42,0 chrM 61903 . C T 2738 filter AC=2;AF=1.00;AN=2;DP=826;DS;Dels=0.00;FS=0.000;HaplotypeScore=6.9494;MLEAC=2;MLEAF=1.00;MQ=31.35;MQ0=0;QD=3.31;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:0,826:826:99:2771,309,0 chrM 72571 . A G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=7.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:47,6,0 chrM 74051 . T C 21678.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.069;DP=1000;DS;Dels=0.00;FS=36.840;HaplotypeScore=66.9573;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.270;QD=21.68;ReadPosRankSum=6.373;SB=-1.085e+04 GT:AD:DP:GQ:PL 1/1:14,980:1000:99:21678,2485,0 chrM 74225 . T A 22773.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=7.128;DP=1000;DS;Dels=0.00;FS=31.253;HaplotypeScore=98.2156;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;MQRankSum=2.474;QD=22.77;ReadPosRankSum=7.340;SB=-8.136e+03 GT:AD:DP:GQ:PL 1/1:19,981:1000:99:22773,2610,0 chrM 74327 . T C 17422.01 filter AC=2;AF=1.00;AN=2;DP=906;DS;Dels=0.00;FS=0.000;HaplotypeScore=35.8732;MLEAC=2;MLEAF=1.00;MQ=43.05;MQ0=0;QD=19.23;SB=-6.873e+03 GT:AD:DP:GQ:PL 1/1:0,895:906:99:17422,2102,0 chrM 74381 . T C 16256.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=983;DS;Dels=0.00;FS=0.000;HaplotypeScore=13.2605;MLEAC=2;MLEAF=1.00;MQ=30.34;MQ0=0;QD=16.54;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,982:983:99:16256,2155,0 chrM 74384 . T A 21489.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=972;DS;Dels=0.00;FS=0.000;HaplotypeScore=7.3521;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;QD=22.11;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,972:972:99:21489,2371,0 chrM 74390 . T C 17938.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=970;DS;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;MQRankSum=0.636;QD=18.49;ReadPosRankSum=-1.518;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:1,969:970:99:17938,2157,0 chrM 74415 . G C 17989.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=857;DS;Dels=0.00;FS=0.000;HaplotypeScore=3.8172;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=0;QD=20.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,856:856:99:17989,2016,0 chrM 74416 . C A 17817.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.872;DP=857;DS;Dels=0.00;FS=0.000;HaplotypeScore=3.8172;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=0;MQRankSum=-0.016;QD=20.79;ReadPosRankSum=1.837;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,855:857:99:17817,1978,0 chrM 74420 . T C 17802.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=993;DS;Dels=0.00;FS=0.000;HaplotypeScore=3.8172;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=0;QD=17.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,993:993:99:17802,2072,0 chrM 74423 . T A 18967.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=993;DS;Dels=0.00;FS=0.000;HaplotypeScore=205.4928;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=0;QD=19.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,992:993:99:18967,2003,0 chrM 74426 . G A 17317.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=953;DS;Dels=0.00;FS=0.000;HaplotypeScore=206.4822;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=0;QD=18.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,953:953:99:17317,1915,0 chrM 74441 . T A 390 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.937;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=26.7949;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.001;QD=0.39;ReadPosRankSum=0.473;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:2,996:999:48:423,48,0 chrM 74447 . A C 9084.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=499.0512;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,999:999:99:9084,1023,0 chrM 74450 . T C 8456.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=7.9671;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,1000:1000:99:8456,960,0 chrM 74462 . G A 7713.01 filter AC=2;AF=1.00;AN=2;DP=983;DS;Dels=0.00;FS=0.000;HaplotypeScore=6.3064;MLEAC=2;MLEAF=1.00;MQ=29.02;MQ0=0;QD=7.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,983:983:99:7713,870,0 chrM 74465 . C T 7379.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=987;DS;Dels=0.00;FS=0.000;HaplotypeScore=6.2276;MLEAC=2;MLEAF=1.00;MQ=29.01;MQ0=0;MQRankSum=0.128;QD=7.48;ReadPosRankSum=-0.535;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,986:987:99:7379,831,0 chrM 74521 . T A 3959.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=261;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=15.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:3959,441,0 chrM 74522 . T A 3905.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=261;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=14.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:3905,438,0 chrM 74524 . C T 4056.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=261;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=15.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:4056,441,0 chrM 74527 . A G 4190.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=261;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=16.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:4190,441,0 chrM 74536 . A G 2421 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.219;DP=190;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=-0.689;QD=12.74;ReadPosRankSum=6.219;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:14,176:190:99:2454,264,0 chrM 74545 . T A 788 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=9.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:821,99,0 chrM 74550 . A T 58.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.379;DP=45;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;MQRankSum=0.282;QD=1.30;ReadPosRankSum=4.379;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:8,37:45:12:91,12,0 chrM 74551 . A T 34.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=0;QD=0.95;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,37:37:9:67,9,0 chrM 75888 . G C 32.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=10.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:65,9,0 chrM 75889 . A G 35.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=11.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:68,9,0 chrM 75912 . A G 112.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;QD=18.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:145,18,0 chrM 75921 . A G 127.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;QD=21.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:160,18,0 chrM 79713 . C T 22319.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.209;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=122.8580;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.711;QD=22.32;ReadPosRankSum=0.696;SB=-1.215e+04 GT:AD:DP:GQ:PL 1/1:1,999:1000:99:22319,2393,0 chrV 159 . G A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=183.7506;MLEAC=2;MLEAF=1.00;MQ=17.25;MQ0=1;QD=0.19;SB=-1.773e+00 GT:AD:DP:GQ:PL 1/1:0,106:106:6:51,6,0 chrV 201 . A T 1117 filter AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=17.29;MQ0=48;QD=5.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:1150,129,0 chrV 239 . C G 1111 filter AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.66;MQ0=48;QD=7.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1144,132,0 chrV 263 . T A 828 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=16.70;MQ0=42;QD=7.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,109:109:96:861,96,0 chrV 478 . A G 138.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-6.084;DP=565;Dels=0.00;FS=26.092;HaplotypeScore=31.5472;MLEAC=2;MLEAF=1.00;MQ=7.20;MQ0=403;MQRankSum=3.963;QD=0.24;ReadPosRankSum=-1.972;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:378,181:565:21:171,21,0 chrV 486 . C T 155.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.021;DP=592;Dels=0.00;FS=71.092;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=5.58;MQ0=429;MQRankSum=-0.174;QD=0.26;ReadPosRankSum=-4.051;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:377,212:592:21:188,21,0 chrV 542 . G C 3031 filter AC=2;AF=1.00;AN=2;DP=840;Dels=0.00;FS=0.000;HaplotypeScore=4.0326;MLEAC=2;MLEAF=1.00;MQ=11.93;MQ0=262;QD=3.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,840:840:99:3064,336,0 chrV 600 . G A 2130 filter AC=2;AF=1.00;AN=2;DP=412;Dels=0.00;FS=0.000;HaplotypeScore=18.1662;MLEAC=2;MLEAF=1.00;MQ=16.83;MQ0=30;QD=5.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,410:412:99:2163,237,0 chrV 1497 . A T 855.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;DP=997;DS;Dels=0.00;FS=296.903;HaplotypeScore=31.6539;MLEAC=1;MLEAF=0.500;MQ=30.76;MQ0=102;MQRankSum=10.996;QD=0.86;ReadPosRankSum=-5.367;SB=-1.530e+02 GT:AD:DP:GQ:PL 0/1:760,234:997:99:885,0,11042 chrV 1573 . T C 212.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;DP=392;DS;Dels=0.00;FS=13.559;HaplotypeScore=127.7067;MLEAC=1;MLEAF=0.500;MQ=31.95;MQ0=10;MQRankSum=-7.690;QD=0.54;ReadPosRankSum=9.510;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:332,46:392:99:242,0,4719 chrV 1608 . T G 2637 filter AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=4;QD=17.24;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2670,315,0 chrV 1656 . G A 2022 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.488;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.7178;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=0;MQRankSum=1.445;QD=13.66;ReadPosRankSum=5.818;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:17,130:148:99:2055,185,0 chrV 1659 . A T 2069 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.549;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.8857;MLEAC=2;MLEAF=1.00;MQ=27.08;MQ0=0;MQRankSum=3.389;QD=14.27;ReadPosRankSum=4.834;SB=-6.502e-03 GT:AD:DP:GQ:PL 1/1:17,128:145:99:2102,185,0 chrV 1660 . G T 2070 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.707;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.8857;MLEAC=2;MLEAF=1.00;MQ=27.08;MQ0=0;MQRankSum=1.957;QD=14.28;ReadPosRankSum=4.440;SB=-6.497e-03 GT:AD:DP:GQ:PL 1/1:17,128:145:99:2103,185,0 chrV 1662 . A G 1979 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.481;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.8857;MLEAC=2;MLEAF=1.00;MQ=26.72;MQ0=0;MQRankSum=4.843;QD=13.11;ReadPosRankSum=4.720;SB=3.00 GT:AD:DP:GQ:PL 1/1:24,127:151:99:2012,187,0 chrV 1680 . T G 1458 filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5518;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=0;QD=9.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:1491,174,0 chrV 1698 . A G 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.497;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=25.34;MQ0=2;MQRankSum=0.570;QD=0.22;ReadPosRankSum=7.824;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,39:181:69:69,0,1280 chrV 1738 . A G 3186 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=6.6336;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=2;MQRankSum=1.558;QD=12.21;ReadPosRankSum=3.551;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,254:261:99:3219,346,0 chrV 1749 . A T 336.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;DP=280;Dels=0.00;FS=6.890;HaplotypeScore=32.6377;MLEAC=1;MLEAF=0.500;MQ=25.21;MQ0=4;MQRankSum=1.740;QD=1.20;ReadPosRankSum=-3.268;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:215,65:280:99:366,0,2476 chrV 1755 . G A 2420.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.180;DP=275;Dels=0.00;FS=22.411;HaplotypeScore=31.3606;MLEAC=1;MLEAF=0.500;MQ=25.27;MQ0=5;MQRankSum=2.625;QD=8.80;ReadPosRankSum=3.309;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,202:275:99:2450,0,302 chrV 1762 . A G 150.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.201;DP=281;Dels=0.00;FS=15.149;HaplotypeScore=29.4650;MLEAC=1;MLEAF=0.500;MQ=24.47;MQ0=18;MQRankSum=-1.928;QD=0.53;ReadPosRankSum=1.210;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:221,59:281:99:180,0,2527 chrV 1769 . T C 189.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;DP=293;Dels=0.00;FS=31.958;HaplotypeScore=33.8351;MLEAC=1;MLEAF=0.500;MQ=23.85;MQ0=35;MQRankSum=-2.266;QD=0.65;ReadPosRankSum=2.455;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:218,75:293:99:219,0,2366 chrV 1797 . G A 487.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.402;DP=683;Dels=0.00;FS=269.181;HaplotypeScore=79.3662;MLEAC=1;MLEAF=0.500;MQ=19.23;MQ0=252;MQRankSum=4.174;QD=0.71;ReadPosRankSum=0.628;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:612,61:683:99:517,0,2342 chrV 1815 . C T 1139.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.722;DP=893;Dels=0.00;FS=238.489;HaplotypeScore=395.1420;MLEAC=1;MLEAF=0.500;MQ=18.17;MQ0=418;MQRankSum=10.097;QD=1.28;ReadPosRankSum=-6.454;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:582,210:893:99:1169,0,1160 chrV 1819 . T C 2505.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.876;DP=996;DS;Dels=0.00;FS=44.084;HaplotypeScore=422.1927;MLEAC=1;MLEAF=0.500;MQ=18.36;MQ0=474;MQRankSum=11.216;QD=2.52;ReadPosRankSum=-10.179;SB=-1.259e+03 GT:AD:DP:GQ:PL 0/1:662,334:996:99:2535,0,500 chrV 1824 . G C 436.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.302;DP=997;DS;Dels=0.00;FS=131.456;HaplotypeScore=473.9417;MLEAC=1;MLEAF=0.500;MQ=18.72;MQ0=458;MQRankSum=4.054;QD=0.44;ReadPosRankSum=1.467;SB=-8.750e+02 GT:AD:DP:GQ:PL 0/1:798,169:997:99:466,0,3054 chrV 1828 . G A 517.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.259;DP=998;DS;Dels=0.00;FS=122.314;HaplotypeScore=294.3403;MLEAC=1;MLEAF=0.500;MQ=18.88;MQ0=460;MQRankSum=0.378;QD=0.52;ReadPosRankSum=4.130;SB=-8.170e+02 GT:AD:DP:GQ:PL 0/1:816,147:998:99:547,0,3426 chrV 1829 . A C 378.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.805;DP=998;DS;Dels=0.00;FS=133.053;HaplotypeScore=283.4070;MLEAC=1;MLEAF=0.500;MQ=18.79;MQ0=465;MQRankSum=0.904;QD=0.38;ReadPosRankSum=4.810;SB=-7.230e+02 GT:AD:DP:GQ:PL 0/1:826,146:998:99:408,0,3732 chrV 1836 . A G 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;DP=1000;DS;Dels=0.00;FS=42.255;HaplotypeScore=134.3679;MLEAC=1;MLEAF=0.500;MQ=18.67;MQ0=466;MQRankSum=1.944;QD=0.04;ReadPosRankSum=2.751;SB=-4.620e+02 GT:AD:DP:GQ:PL 0/1:819,148:1000:66:66,0,3708 chrV 1839 . T G 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.680;DP=1000;DS;Dels=0.00;FS=55.730;HaplotypeScore=112.0858;MLEAC=1;MLEAF=0.500;MQ=18.48;MQ0=474;MQRankSum=0.349;QD=0.01;ReadPosRankSum=2.609;SB=-4.690e+02 GT:AD:DP:GQ:PL 0/1:852,147:1000:40:40,0,4418 chrV 1870 . A G 881.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.451;DP=946;DS;Dels=0.00;FS=37.064;HaplotypeScore=46.2906;MLEAC=1;MLEAF=0.500;MQ=17.81;MQ0=496;MQRankSum=1.866;QD=0.93;ReadPosRankSum=5.413;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:817,129:946:99:911,0,3217 chrV 1887 . A C 1835.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;DP=860;DS;Dels=0.00;FS=42.517;HaplotypeScore=125.5736;MLEAC=1;MLEAF=0.500;MQ=16.33;MQ0=466;MQRankSum=7.751;QD=2.13;ReadPosRankSum=7.701;SB=-2.730e+02 GT:AD:DP:GQ:PL 0/1:657,189:860:99:1865,0,1479 chrV 1891 . C T 532.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.903;DP=960;DS;Dels=0.00;FS=125.337;HaplotypeScore=187.5693;MLEAC=1;MLEAF=0.500;MQ=19.45;MQ0=442;MQRankSum=1.063;QD=0.55;ReadPosRankSum=6.496;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:826,134:960:99:562,0,4427 chrV 2029 . A G 1471.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.233;DP=831;DS;Dels=0.00;FS=0.640;HaplotypeScore=26.9158;MLEAC=1;MLEAF=0.500;MQ=13.19;MQ0=629;MQRankSum=-2.870;QD=1.77;ReadPosRankSum=4.147;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:245,582:828:99:1501,0,515 chrV 2031 . C A 1143.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.401;DP=821;DS;Dels=0.00;FS=3.557;HaplotypeScore=22.2384;MLEAC=1;MLEAF=0.500;MQ=11.95;MQ0=645;MQRankSum=-2.886;QD=1.39;ReadPosRankSum=3.976;SB=-5.901e+01 GT:AD:DP:GQ:PL 0/1:238,580:818:99:1173,0,423 chrV 2107 . T G 6190.01 filter AC=2;AF=1.00;AN=2;DP=901;DS;Dels=0.00;FS=0.000;HaplotypeScore=5.6240;MLEAC=2;MLEAF=1.00;MQ=18.28;MQ0=504;QD=6.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,898:901:99:6190,731,0 chrV 2146 . T C 11492.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.209;DP=844;DS;Dels=0.00;FS=142.594;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=25.87;MQ0=128;MQRankSum=3.840;QD=13.62;ReadPosRankSum=4.181;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,823:844:99:11492,1296,0 chrV 6441 . C T 97.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.717;DP=11;Dels=0.00;FS=18.195;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=0;MQRankSum=2.637;QD=8.84;ReadPosRankSum=-1.932;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,6:11:15:130,15,0 chrV 6455 . C T 176.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.671;DP=17;Dels=0.00;FS=3.274;HaplotypeScore=10.7097;MLEAC=2;MLEAF=1.00;MQ=33.31;MQ0=0;MQRankSum=-0.522;QD=10.35;ReadPosRankSum=1.863;SB=-1.549e+02 GT:AD:DP:GQ:PL 1/1:2,15:17:24:209,24,0 chrV 6579 . T C 90.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.663;DP=228;Dels=0.00;FS=10.757;HaplotypeScore=60.9875;MLEAC=1;MLEAF=0.500;MQ=29.41;MQ0=1;MQRankSum=-0.610;QD=0.39;ReadPosRankSum=0.961;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,88:228:99:120,0,2561 chrV 6586 . A G 1038.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.383;DP=208;Dels=0.00;FS=22.628;HaplotypeScore=100.3806;MLEAC=1;MLEAF=0.500;MQ=29.34;MQ0=1;MQRankSum=-3.465;QD=4.99;ReadPosRankSum=-0.259;SB=-3.007e+00 GT:AD:DP:GQ:PL 0/1:68,140:208:99:1068,0,1244 chrV 6588 . T C 129.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.772;DP=207;Dels=0.00;FS=19.116;HaplotypeScore=98.4225;MLEAC=1;MLEAF=0.500;MQ=29.30;MQ0=1;MQRankSum=-0.882;QD=0.62;ReadPosRankSum=5.424;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:125,82:207:99:159,0,2216 chrV 6589 . A G 167.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DP=206;Dels=0.00;FS=19.174;HaplotypeScore=97.4560;MLEAC=1;MLEAF=0.500;MQ=29.30;MQ0=1;MQRankSum=-2.106;QD=0.81;ReadPosRankSum=5.594;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:124,82:206:99:197,0,1964 chrV 6594 . T C 239.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.540;DP=205;Dels=0.00;FS=1.624;HaplotypeScore=114.1897;MLEAC=1;MLEAF=0.500;MQ=29.45;MQ0=1;MQRankSum=-0.232;QD=1.17;ReadPosRankSum=-6.167;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:160,45:205:99:269,0,1863 chrV 6600 . A G 173.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.415;DP=193;Dels=0.01;FS=4.504;HaplotypeScore=4.4892;MLEAC=1;MLEAF=0.500;MQ=28.69;MQ0=1;MQRankSum=-1.914;QD=0.90;ReadPosRankSum=-6.767;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:158,34:192:99:203,0,1787 chrV 6611 . G C 2191 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=9.2010;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=1;QD=12.89;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2224,255,0 chrV 6614 . T C 326.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.185;DP=163;Dels=0.00;FS=24.421;HaplotypeScore=8.4123;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=1;MQRankSum=-1.408;QD=2.00;ReadPosRankSum=1.428;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,97:163:99:356,0,1356 chrV 6617 . C T 424.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.725;DP=158;Dels=0.00;FS=28.138;HaplotypeScore=7.6236;MLEAC=1;MLEAF=0.500;MQ=28.44;MQ0=1;MQRankSum=-2.622;QD=2.68;ReadPosRankSum=-0.911;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,102:158:99:454,0,1132 chrV 6658 . T C 91.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.272;DP=76;Dels=0.00;FS=5.004;HaplotypeScore=73.8165;MLEAC=1;MLEAF=0.500;MQ=29.37;MQ0=0;MQRankSum=-2.427;QD=1.20;ReadPosRankSum=1.112;SB=-8.401e+01 GT:AD:DP:GQ:PL 0/1:29,47:76:99:121,0,589 chrV 6674 . C T 132.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.045;DP=84;Dels=0.00;FS=35.079;HaplotypeScore=2.9444;MLEAC=1;MLEAF=0.500;MQ=27.21;MQ0=0;MQRankSum=-4.324;QD=1.57;ReadPosRankSum=1.360;SB=-1.440e+02 GT:AD:DP:GQ:PL 0/1:25,59:84:99:162,0,417 chrV 6677 . C G 124.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.507;DP=73;Dels=0.00;FS=24.178;HaplotypeScore=1.3670;MLEAC=1;MLEAF=0.500;MQ=26.80;MQ0=0;MQRankSum=-4.346;QD=1.70;ReadPosRankSum=1.449;SB=-1.400e+02 GT:AD:DP:GQ:PL 0/1:22,51:73:99:154,0,416 chrV 6678 . C T 135.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;DP=74;Dels=0.00;FS=27.043;HaplotypeScore=2.1557;MLEAC=1;MLEAF=0.500;MQ=26.96;MQ0=0;MQRankSum=-3.506;QD=1.82;ReadPosRankSum=1.390;SB=-1.450e+02 GT:AD:DP:GQ:PL 0/1:22,52:74:99:165,0,448 chrV 6682 . C T 159.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.946;DP=84;Dels=0.00;FS=25.260;HaplotypeScore=17.0620;MLEAC=1;MLEAF=0.500;MQ=27.26;MQ0=0;MQRankSum=-5.490;QD=1.89;ReadPosRankSum=0.668;SB=-3.530e+02 GT:AD:DP:GQ:PL 0/1:24,60:84:99:189,0,429 chrV 6683 . C T 153.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.064;DP=88;Dels=0.00;FS=21.540;HaplotypeScore=20.0275;MLEAC=1;MLEAF=0.500;MQ=27.91;MQ0=0;MQRankSum=-4.118;QD=1.74;ReadPosRankSum=0.014;SB=-4.100e+02 GT:AD:DP:GQ:PL 0/1:24,64:88:99:183,0,422 chrV 6704 . C A 216.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.217;DP=231;Dels=0.00;FS=18.249;HaplotypeScore=43.4984;MLEAC=1;MLEAF=0.500;MQ=32.37;MQ0=0;MQRankSum=3.194;QD=0.94;ReadPosRankSum=4.508;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:204,26:231:99:246,0,1994 chrV 6708 . A C 503.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.984;DP=252;Dels=0.00;FS=409.487;HaplotypeScore=45.9424;MLEAC=1;MLEAF=0.500;MQ=32.55;MQ0=0;MQRankSum=2.086;QD=2.00;ReadPosRankSum=1.907;SB=-9.502e+01 GT:AD:DP:GQ:PL 0/1:162,90:252:99:533,0,2188 chrV 6744 . G A 1222.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.988;DP=365;Dels=0.00;FS=338.661;HaplotypeScore=17.3909;MLEAC=1;MLEAF=0.500;MQ=36.68;MQ0=1;MQRankSum=-6.971;QD=3.35;ReadPosRankSum=7.472;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:225,139:365:99:1252,0,3212 chrV 6773 . T G 188.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.658;DP=359;Dels=0.00;FS=108.546;HaplotypeScore=77.3414;MLEAC=1;MLEAF=0.500;MQ=40.70;MQ0=1;MQRankSum=-4.175;QD=0.52;ReadPosRankSum=-4.098;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:296,63:359:99:218,0,5332 chrV 7660 . C T 3999.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.6214;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.16;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3999,447,0 chrV 7740 . G A 4261.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.1081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4261,474,0 chrV 8042 . C A 1991 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.62;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2024,225,0 chrV 8245 . G A 1893 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=22.01;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1926,207,0 chrV 8258 . T C 1836 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.86;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1869,210,0 chrV 8282 . A G 2162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=0.243;QD=20.21;ReadPosRankSum=1.700;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2195,249,0 chrV 8572 . A G 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=142;Dels=0.00;FS=6.208;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.244;QD=24.20;ReadPosRankSum=1.708;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3436,381,0 chrV 8630 . T C 2952 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2233;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.29;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2985,330,0 chrV 8932 . T C 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=3.380;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.919;QD=19.21;ReadPosRankSum=1.661;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1916,219,0 chrV 8946 . C T 2005 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=19.85;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2038,222,0 chrV 9054 . T C 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.879;QD=24.49;ReadPosRankSum=1.706;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3282,369,0 chrV 9111 . G T 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=3.522;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.220;QD=20.77;ReadPosRankSum=1.320;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2650,291,0 chrV 9542 . T C 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=3.753;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=1.340;QD=22.75;ReadPosRankSum=1.710;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3662,417,0 chrV 9556 . G A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.08;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3510,384,0 chrV 9596 . G A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.13;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3321,375,0 chrV 9763 . A G 3644.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.69;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3644,420,0 chrV 10621 . T C 4605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.553;QD=24.37;ReadPosRankSum=1.658;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4605,510,0 chrV 10731 . C T 3497.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.3118;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.27;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3497,384,0 chrV 10779 . T C 3376.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.51;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3376,396,0 chrV 10914 . T G 2979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.656;QD=21.90;ReadPosRankSum=1.681;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3012,345,0 chrV 11165 . T C 4449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.648;QD=24.85;ReadPosRankSum=1.713;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4449,492,0 chrV 11195 . T G 4397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-1.859;QD=22.78;ReadPosRankSum=1.297;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:4397,498,0 chrV 11210 . A G 4275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=198;Dels=0.00;FS=7.478;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=1.395;QD=21.59;ReadPosRankSum=2.388;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4275,480,0 chrV 11261 . T C 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=165;Dels=0.00;FS=3.024;HaplotypeScore=13.3347;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.656;QD=19.46;ReadPosRankSum=2.404;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3244,357,0 chrV 11322 . T G 3730.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=20.38;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3730,420,0 chrV 11331 . A T 3968.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=20.88;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3968,423,0 chrV 11349 . T C 3882.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=18.66;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:3882,447,0 chrV 11439 . C G 3744.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.29;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3744,423,0 chrV 11548 . A G 4275.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.2036;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.15;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4275,501,0 chrV 11659 . G A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6312;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.57;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3700,399,0 chrV 12036 . C A 3209 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.9324;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.92;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3242,345,0 chrV 12071 . A C 3838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=3.724;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.892;QD=23.26;ReadPosRankSum=1.711;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3838,438,0 chrV 12147 . T C 3480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.102;QD=24.17;ReadPosRankSum=1.684;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3480,387,0 chrV 12186 . G A 3000 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.62;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3033,327,0 chrV 12215 . T C 2487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=134;Dels=0.00;FS=2.979;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-2.170;QD=18.56;ReadPosRankSum=2.375;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:2,130:134:99:2520,282,0 chrV 12258 . A C 3501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.814;QD=20.96;ReadPosRankSum=1.711;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3501,399,0 chrV 12413 . A T 3501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=3.285;HaplotypeScore=5.8062;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-1.167;QD=23.82;ReadPosRankSum=1.638;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3501,387,0 chrV 12486 . A C 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=154;Dels=0.00;FS=3.125;HaplotypeScore=8.1426;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.427;QD=21.75;ReadPosRankSum=1.687;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3350,378,0 chrV 12590 . T C 4433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.5036;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=0.813;QD=22.62;ReadPosRankSum=1.697;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4433,501,0 chrV 12600 . C T 4311.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=21.77;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4311,489,0 chrV 12701 . A G 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=17.5013;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.540;QD=21.54;ReadPosRankSum=1.708;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3135,363,0 chrV 12937 . C T 3615.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=23.94;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3615,396,0 chrV 13167 . T G 3969.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.30;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3969,459,0 chrV 13307 . A G 3487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0725;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=-0.449;QD=21.39;ReadPosRankSum=1.689;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3487,387,0 chrV 13327 . G T 3164 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=20.28;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3197,345,0 chrV 13446 . T A 3305.01 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;QD=19.56;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3305,363,0 chrV 13447 . C T 3181 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.6722;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;QD=18.71;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3214,363,0 chrV 13452 . A T 3427.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=41.53;MQ0=0;MQRankSum=-1.207;QD=19.25;ReadPosRankSum=1.674;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3427,366,0 chrV 13454 . C T 3325.01 SnpCluster AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=41.53;MQ0=0;QD=18.68;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3325,360,0 chrV 13502 . T C 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=140.9324;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;MQRankSum=-1.222;QD=15.39;ReadPosRankSum=1.711;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:2541,285,0 chrV 13652 . A G 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=4.556;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-1.165;QD=23.06;ReadPosRankSum=1.673;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4104,477,0 chrV 14370 . T C 2996 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.03;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3029,342,0 chrV 14425 . C T 2290 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=22.02;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2323,255,0 chrV 14438 . T A 2307 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=20.97;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2340,255,0 chrV 14476 . G A 1916 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=20.83;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1949,216,0 chrV 14482 . A G 1943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=0.615;QD=20.67;ReadPosRankSum=1.695;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1976,225,0 chrV 14512 . C G 1938 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=20.62;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1971,222,0 chrV 14579 . T A 2146 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=21.68;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2179,237,0 chrV 14582 . T C 2002 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=21.07;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2035,240,0 chrV 14659 . A T 1756 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=24.73;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1789,198,0 chrV 14732 . A G 221 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=146.9092;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;QD=2.66;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:33:254,33,0 chrV 14785 . T A 1104 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3857;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=17.25;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1137,126,0 chrV 14798 . C T 892 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=14.39;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:925,102,0 chrV 14808 . A T 853 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=13.33;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:96:886,96,0 chrV 14875 . C T 2083 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=191.3686;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=19.11;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2116,237,0 chrV 14921 . T A 1411 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=16.60;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1444,156,0 chrV 14947 . T A 1093 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=10.3696;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=13.01;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1126,120,0 chrV 15022 . A C 2328 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.36;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2361,261,0 chrV 15054 . A T 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=1.051;QD=22.35;ReadPosRankSum=1.643;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2648,288,0 chrV 15121 . G A 2191 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=7.2153;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=23.56;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2224,240,0 chrV 15173 . C G 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=103.7170;MLEAC=1;MLEAF=0.500;MQ=54.18;MQ0=0;MQRankSum=1.370;QD=0.11;ReadPosRankSum=-4.267;SB=-9.601e+01 GT:AD:DP:GQ:PL 0/1:105,7:113:37:42,0,37 chrV 15174 . C T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.748;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=102.9283;MLEAC=1;MLEAF=0.500;MQ=54.41;MQ0=0;MQRankSum=-1.018;QD=0.12;ReadPosRankSum=3.976;SB=-1.178e+03 GT:AD:DP:GQ:PL 0/1:6,107:113:43:43,0,45 chrV 15198 . C G 2570 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=20.89;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2603,294,0 chrV 15479 . T C 3629.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.11;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3629,408,0 chrV 15541 . A G 2819 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=18.79;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2852,333,0 chrV 15562 . C G 2808 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;QD=16.33;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:2841,321,0 chrV 15565 . T C 2704 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=178;Dels=0.00;FS=10.025;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;MQRankSum=-1.537;QD=15.19;ReadPosRankSum=2.961;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:2737,312,0 chrV 15568 . G A 3001 SnpCluster AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;QD=16.58;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3034,327,0 chrV 15606 . A G 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=186;Dels=0.00;FS=2.751;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;MQRankSum=-0.997;QD=14.70;ReadPosRankSum=2.370;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:2767,315,0 chrV 15608 . C T 2911 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.6775;MLEAC=2;MLEAF=1.00;MQ=45.80;MQ0=0;QD=15.24;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:2944,324,0 chrV 15966 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3300,357,0 chrV 16323 . T C 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=3.515;HaplotypeScore=9.8210;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.212;QD=23.27;ReadPosRankSum=1.665;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3607,405,0 chrV 16942 . G C 3892.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.99;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3892,456,0 chrV 17065 . C T 3867.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.35;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3867,432,0 chrV 17311 . C T 3300.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=19.88;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3300,357,0 chrV 17320 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.06;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3316,360,0 chrV 17400 . T A 4135.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.8913;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.85;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4135,471,0 chrV 18172 . C A 1928 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.65;MQ0=0;QD=16.07;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1961,219,0 chrV 18174 . A T 1787 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.21;MQ0=0;QD=15.14;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1820,204,0 chrV 18178 . A C 1809 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.68;MQ0=0;QD=14.71;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1842,207,0 chrV 18182 . T C 1733 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=126;Dels=0.00;FS=2.956;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.20;MQ0=0;MQRankSum=-1.435;QD=13.75;ReadPosRankSum=2.411;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:1766,204,0 chrV 18193 . T C 1586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=137;Dels=0.00;FS=5.867;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.61;MQ0=0;MQRankSum=-2.228;QD=11.58;ReadPosRankSum=2.949;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:1619,183,0 chrV 18224 . C T 1614 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.54;MQ0=0;QD=12.04;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1647,177,0 chrV 18229 . C T 1466 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.58;MQ0=0;QD=12.02;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1499,162,0 chrV 18230 . C G 1389 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.11;MQ0=0;QD=11.20;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:1422,162,0 chrV 18232 . G A 1490 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.09;MQ0=0;QD=11.64;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:1523,168,0 chrV 18285 . A T 2227 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=18.87;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2260,246,0 chrV 18391 . C G 3809.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=22.15;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3809,450,0 chrV 18424 . C T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=22.63;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4005,435,0 chrV 18474 . T A 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=177;Dels=0.00;FS=2.892;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-0.705;QD=22.27;ReadPosRankSum=2.338;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3942,426,0 chrV 18721 . T G 2826 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.91;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2859,330,0 chrV 19144 . T C 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.1699;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.713;QD=22.32;ReadPosRankSum=1.656;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4084,462,0 chrV 19236 . C A 5036.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.09;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5036,549,0 chrV 19431 . C T 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.191;DP=107;Dels=0.00;FS=32.804;HaplotypeScore=88.9386;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=3.204;QD=16.96;ReadPosRankSum=1.401;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:5,101:107:99:1848,198,0 chrV 19630 . T C 259.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.646;DP=112;Dels=0.00;FS=80.769;HaplotypeScore=1.8583;MLEAC=1;MLEAF=0.500;MQ=22.82;MQ0=31;MQRankSum=3.553;QD=2.31;ReadPosRankSum=-2.658;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:52,59:112:99:289,0,952 chrV 19654 . A C 1879 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=164;Dels=0.00;FS=6.621;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=20.61;MQ0=36;MQRankSum=1.676;QD=11.46;ReadPosRankSum=1.704;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:1,159:164:99:1912,222,0 chrV 19717 . C A 3439.01 filter AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=3.4470;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=55;QD=13.49;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:3439,405,0 chrV 19786 . C T 1257 filter AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.2003;MLEAC=2;MLEAF=1.00;MQ=17.19;MQ0=109;QD=7.06;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,178:178:99:1290,141,0 chrV 19984 . A G 2839 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;DP=240;Dels=0.00;FS=2.186;HaplotypeScore=13.5342;MLEAC=2;MLEAF=1.00;MQ=27.53;MQ0=97;MQRankSum=-2.064;QD=11.83;ReadPosRankSum=0.120;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:3,237:240:99:2872,330,0 chrV 20368 . A G 1114 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.198;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=27.76;MQ0=6;MQRankSum=1.683;QD=14.66;ReadPosRankSum=1.683;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1147,108,0 chrV 20659 . T C 4009.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.020;DP=272;Dels=0.00;FS=15.217;HaplotypeScore=15.0735;MLEAC=2;MLEAF=1.00;MQ=19.04;MQ0=86;MQRankSum=0.821;QD=14.74;ReadPosRankSum=4.159;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:6,265:272:99:4009,465,0 chrV 20785 . T C 4049.01 filter AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=63;QD=15.82;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:4049,465,0 chrV 20807 . G A 2128 filter AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.61;MQ0=74;QD=11.89;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,179:179:99:2161,237,0 chrV 20824 . G A 832 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.31;MQ0=80;QD=6.45;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,129:129:99:865,99,0 chrV 20858 . C T 773 filter AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.01;MQ0=61;QD=5.33;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:90:806,90,0 chrV 20912 . C G 1976 filter AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.5084;MLEAC=2;MLEAF=1.00;MQ=19.85;MQ0=48;QD=9.23;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,213:214:99:2009,225,0 chrV 20941 . C T 1997 filter AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=21.23;MQ0=45;QD=11.03;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,174:181:99:2030,225,0 chrV 21001 . C T 2046 filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=27.49;MQ0=27;QD=14.93;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2079,234,0 chrV 21022 . A G 1845 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=114;Dels=0.00;FS=2.960;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=29.19;MQ0=19;MQRankSum=0.825;QD=16.18;ReadPosRankSum=2.397;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:1878,213,0 chrV 21110 . A T 639 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=7;QD=19.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:72:672,72,0 chrV 21153 . T C 840 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=47;Dels=0.00;FS=2.981;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.64;MQ0=8;MQRankSum=-1.942;QD=17.87;ReadPosRankSum=2.197;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:3,44:47:99:873,99,0 chrV 21320 . G A 1128 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=24.9823;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=1;QD=15.89;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1161,132,0 chrV 21891 . C T 6622.01 filter AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=17.7972;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=6;QD=23.07;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:6622,720,0 chrV 21951 . A G 3571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.643;DP=227;Dels=0.00;FS=21.896;HaplotypeScore=10.1671;MLEAC=2;MLEAF=1.00;MQ=36.42;MQ0=3;MQRankSum=-3.029;QD=15.73;ReadPosRankSum=3.657;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:5,222:227:99:3571,411,0 chrV 21990 . A G 2163 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.54;MQ0=11;QD=10.60;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:2196,252,0 chrV 21993 . A T 2034 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=200;Dels=0.00;FS=3.956;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=16;MQRankSum=0.772;QD=10.17;ReadPosRankSum=1.657;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:2067,240,0 chrV 21999 . G A 2105 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=25.41;MQ0=20;QD=10.02;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:2138,249,0 chrV 22302 . T G 467 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.58;MQ0=65;QD=4.86;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,96:96:60:500,60,0 chrV 22305 . A G 387 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.076;DP=94;Dels=0.00;FS=25.580;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.77;MQ0=68;MQRankSum=-3.150;QD=4.12;ReadPosRankSum=3.076;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:4,89:94:51:420,51,0 chrV 22341 . C T 729 filter AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.69;MQ0=47;QD=5.28;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:84:762,84,0 chrV 22377 . C T 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.840;DP=144;Dels=0.00;FS=84.281;HaplotypeScore=3.7218;MLEAC=1;MLEAF=0.500;MQ=24.70;MQ0=33;MQRankSum=-3.384;QD=0.20;ReadPosRankSum=-1.043;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,50:144:59:59,0,1146 chrV 22432 . G A 700.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.403;DP=191;Dels=0.00;FS=11.542;HaplotypeScore=10.4307;MLEAC=1;MLEAF=0.500;MQ=28.88;MQ0=19;MQRankSum=-5.842;QD=3.66;ReadPosRankSum=1.518;SB=-1.830e+02 GT:AD:DP:GQ:PL 0/1:101,86:191:99:730,0,1195 chrV 22542 . G C 1799 filter AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=22.97;MQ0=71;QD=9.88;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,181:182:99:1832,219,0 chrV 22581 . A G 860.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.027;DP=133;Dels=0.00;FS=78.143;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=23.31;MQ0=43;MQRankSum=4.411;QD=6.47;ReadPosRankSum=0.232;SB=-4.240e+02 GT:AD:DP:GQ:PL 0/1:54,79:133:99:890,0,231 chrV 22614 . C G 839 filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.92;MQ0=30;QD=5.75;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,144:146:99:872,99,0 chrV 22641 . C A 726 filter AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=20.65;MQ0=14;QD=4.62;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,157:157:84:759,84,0 chrV 22644 . T A 731 filter AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.8245;MLEAC=2;MLEAF=1.00;MQ=20.44;MQ0=16;QD=4.46;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,163:164:84:764,84,0 chrV 22665 . G A 546 filter AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.97;MQ0=26;QD=2.95;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,185:185:63:579,63,0 chrV 22671 . T C 498 filter AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.57;MQ0=30;QD=2.75;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,181:181:60:531,60,0 chrV 22746 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.47;MQ0=45;QD=0.37;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,54:54:6:51,6,0 chrV 22764 . T C 459 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=83;Dels=0.00;FS=5.465;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=18.37;MQ0=50;MQRankSum=-2.348;QD=5.53;ReadPosRankSum=2.787;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:57:492,57,0 chrV 23118 . G A 3421.01 filter AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=16.8578;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=7;QD=19.11;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3421,387,0 chrV 23151 . T C 3381.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.02;FS=0.000;HaplotypeScore=7.6316;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=3;QD=16.99;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3381,375,0 chrV 23160 . G A 3430.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=3;QD=16.98;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:3430,384,0 chrV 23192 . C T 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.165;DP=195;Dels=0.00;FS=19.346;HaplotypeScore=46.2687;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;MQRankSum=5.606;QD=13.94;ReadPosRankSum=5.449;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:14,181:195:99:2752,282,0 chrV 23309 . A G 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=173;Dels=0.00;FS=6.678;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.379;QD=22.01;ReadPosRankSum=2.407;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:3808,429,0 chrV 23494 . C T 4148.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.7889;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.57;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4148,444,0 chrV 23768 . C T 3980.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3980,426,0 chrV 24025 . G C 4359.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=19.4835;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.37;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4359,486,0 chrV 24135 . T C 3342.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.21;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3342,375,0 chrV 24232 . C T 2879 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=20.56;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2912,321,0 chrV 24670 . C T 4593.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.5416;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.55;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4593,510,0 chrV 24708 . T C 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=176;Dels=0.00;FS=2.021;HaplotypeScore=15.0012;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.235;QD=20.48;ReadPosRankSum=3.390;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:4,171:176:99:3605,402,0 chrV 24870 . G A 4133.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.09;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4133,447,0 chrV 24902 . G A 4311.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.7832;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.81;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4311,468,0 chrV 25057 . C T 3403.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.81;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3403,375,0 chrV 25084 . G C 3189 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=20.44;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3222,354,0 chrV 25106 . A G 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.379;QD=18.97;ReadPosRankSum=1.709;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2897,333,0 chrV 25120 . T A 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=154;Dels=0.00;FS=8.529;HaplotypeScore=7.5651;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-1.125;QD=19.10;ReadPosRankSum=2.370;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:2975,333,0 chrV 25279 . A T 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=1.306;QD=23.18;ReadPosRankSum=1.704;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2861,309,0 chrV 25313 . A G 2070 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=22.75;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2103,240,0 chrV 25625 . A T 3497.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.80;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3497,381,0 chrV 26020 . C T 3218.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.89;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3251,351,0 chrV 26265 . A C 5782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=247;Dels=0.00;FS=4.682;HaplotypeScore=18.8423;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=1.301;QD=23.41;ReadPosRankSum=1.675;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:1,240:247:99:5782,651,0 chrV 26313 . G T 4891.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.64;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:4891,552,0 chrV 26322 . C G 4666.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=18.81;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:4666,540,0 chrV 26444 . A G 5309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=261;Dels=0.00;FS=5.535;HaplotypeScore=18.7021;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.290;QD=20.34;ReadPosRankSum=2.934;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:3,257:261:99:5309,606,0 chrV 26594 . G A 4872.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.6592;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=23.65;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4872,525,0 chrV 26684 . C T 4352.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.30;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4352,468,0 chrV 26814 . A G 3683.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=21.79;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3683,414,0 chrV 27044 . C T 4422.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.2915;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.06;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,204:210:99:4422,504,0 chrV 27083 . C A 4959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=15.2128;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.795;QD=22.75;ReadPosRankSum=1.351;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4959,549,0 chrV 27116 . T C 4903.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.69;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:4903,570,0 chrV 27183 . C G 5251.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.35;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5251,600,0 chrV 27260 . G A 4214.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.6451;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.41;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4214,456,0 chrV 27345 . C G 3428.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.83;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3428,393,0 chrV 27364 . G A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.22;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3529,375,0 chrV 28097 . C T 3761.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3761,423,0 chrV 28151 . T C 3619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=174;Dels=0.00;FS=3.379;HaplotypeScore=16.2942;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.987;QD=20.80;ReadPosRankSum=1.712;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3619,417,0 chrV 28312 . A G 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=167;Dels=0.00;FS=7.790;HaplotypeScore=9.8695;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.733;QD=23.49;ReadPosRankSum=2.405;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3923,438,0 chrV 29294 . A G 3344.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.44;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3344,378,0 chrV 29517 . A G 2978 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.02;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3011,342,0 chrV 29688 . A G 2780 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4866;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2813,327,0 chrV 29815 . T C 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=139;Dels=0.00;FS=2.902;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.282;QD=22.94;ReadPosRankSum=2.397;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3222,360,0 chrV 29909 . C T 3956.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.7377;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3956,432,0 chrV 29962 . C T 4348.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4348,486,0 chrV 30156 . C T 4203.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.8751;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4203,465,0 chrV 30529 . A C 4459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=192;Dels=0.00;FS=3.900;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.467;QD=23.22;ReadPosRankSum=1.695;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,188:192:99:4459,516,0 chrV 31524 . T A 724 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:84:757,84,0 chrV 33672 . C A 2441 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.91;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2474,267,0 chrV 34154 . G A 3635.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.96;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3635,390,0 chrV 38716 . C T 3696.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.13;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3696,399,0 chrV 39001 . C G 3049 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.0111;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.94;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3082,348,0 chrV 39076 . T C 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=148;Dels=0.00;FS=2.967;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.159;QD=21.16;ReadPosRankSum=2.399;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3164,357,0 chrV 39651 . T A 3324.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8145;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.92;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3324,363,0 chrV 41432 . C G 5194.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=14.3974;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,244:248:99:5194,600,0 chrV 41545 . T C 5407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=278;Dels=0.00;FS=6.390;HaplotypeScore=21.6821;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.598;QD=19.45;ReadPosRankSum=2.343;SB=-3.248e+03 GT:AD:DP:GQ:PL 1/1:2,275:278:99:5407,609,0 chrV 42255 . C T 2182 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2215,240,0 chrV 42418 . G A 3055 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.92;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3088,351,0 chrV 42490 . G A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3674,399,0 chrV 42921 . G A 6599.01 PASS AC=2;AF=1.00;AN=2;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=22.7848;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.18;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,327:327:99:6599,735,0 chrV 43005 . C T 4737.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.22;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4737,516,0 chrV 43074 . T C 4699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=212;Dels=0.00;FS=3.019;HaplotypeScore=15.7914;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.239;QD=22.17;ReadPosRankSum=2.379;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:2,207:212:99:4699,534,0 chrV 43242 . C T 6407.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=16.5856;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.09;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:6407,694,0 chrV 43494 . A G 5829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=304;Dels=0.00;FS=2.778;HaplotypeScore=19.2851;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.409;QD=19.17;ReadPosRankSum=2.409;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:2,301:304:99:5829,675,0 chrV 43578 . A G 7202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=334;Dels=0.00;FS=3.427;HaplotypeScore=33.3500;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.982;QD=21.56;ReadPosRankSum=1.721;SB=-3.627e+03 GT:AD:DP:GQ:PL 1/1:1,327:334:99:7202,816,0 chrV 43744 . C T 4517.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=17.37;SB=-2.984e+03 GT:AD:DP:GQ:PL 1/1:0,257:260:99:4517,492,0 chrV 43746 . A G 4251.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-0.472;QD=16.04;ReadPosRankSum=1.693;SB=-2.944e+03 GT:AD:DP:GQ:PL 1/1:1,263:265:99:4251,495,0 chrV 43838 . A G 5676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.000;DP=299;Dels=0.00;FS=10.713;HaplotypeScore=24.2305;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.066;QD=18.98;ReadPosRankSum=4.124;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:6,293:299:99:5676,654,0 chrV 43959 . G A 5350.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.16;SB=-2.933e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5350,576,0 chrV 44568 . T C 5137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.331;DP=229;Dels=0.00;FS=12.389;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.019;QD=22.43;ReadPosRankSum=3.392;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:4,225:229:99:5137,579,0 chrV 44601 . T G 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=0.537;QD=20.00;ReadPosRankSum=1.687;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:4580,522,0 chrV 44613 . T C 4835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=14.7410;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-1.306;QD=19.65;ReadPosRankSum=1.661;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:1,243:246:99:4835,552,0 chrV 44763 . A G 4893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=212;Dels=0.00;FS=2.984;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.840;QD=23.08;ReadPosRankSum=2.403;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4893,549,0 chrV 44999 . C G 2984 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3017,345,0 chrV 45208 . T C 2757 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2790,312,0 chrV 45710 . A G 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.267;QD=19.69;ReadPosRankSum=1.686;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:2987,348,0 chrV 45816 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.31;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3334,384,0 chrV 45866 . A G 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=138;Dels=0.00;FS=6.100;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.478;QD=23.33;ReadPosRankSum=2.846;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:3,134:138:99:3253,363,0 chrV 45963 . T C 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=159;Dels=0.00;FS=6.160;HaplotypeScore=9.7269;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-0.941;QD=22.50;ReadPosRankSum=2.418;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3578,417,0 chrV 46022 . C T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.4959;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.76;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3764,417,0 chrV 46030 . C G 3311.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.36;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3311,384,0 chrV 46433 . A T 2140 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3481;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.77;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2173,234,0 chrV 46838 . G A 4259.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.40;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4259,465,0 chrV 46866 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=151;Dels=0.00;FS=2.227;HaplotypeScore=12.5752;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-0.980;QD=22.07;ReadPosRankSum=2.832;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:3,147:151:99:3332,375,0 chrV 46910 . A G 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-1.468;QD=22.38;ReadPosRankSum=1.626;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2965,342,0 chrV 46984 . C T 4264.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=2.4504;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.50;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4264,480,0 chrV 46989 . T C 4006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=204;Dels=0.00;FS=3.390;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.384;QD=19.64;ReadPosRankSum=1.698;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4006,465,0 chrV 47084 . G C 3103 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=18.15;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3136,351,0 chrV 47089 . T C 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-1.595;QD=18.11;ReadPosRankSum=1.693;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3239,369,0 chrV 47317 . A G 3660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.876;QD=20.33;ReadPosRankSum=2.422;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:2,176:180:99:3660,417,0 chrV 47503 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.85;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3266,363,0 chrV 48384 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.543;DP=154;Dels=0.00;FS=5.786;HaplotypeScore=13.5017;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.576;QD=21.27;ReadPosRankSum=2.954;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:3,149:154:99:3276,372,0 chrV 49397 . T C 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=183;Dels=0.00;FS=5.856;HaplotypeScore=16.0354;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.967;QD=15.44;ReadPosRankSum=1.713;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:2859,321,0 chrV 49718 . G A 3726.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.45;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3726,414,0 chrV 50125 . A T 4492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.500;QD=23.15;ReadPosRankSum=1.714;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4492,486,0 chrV 50151 . A C 3972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=179;Dels=0.00;FS=2.885;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.312;QD=22.19;ReadPosRankSum=2.422;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:2,175:179:99:3972,450,0 chrV 50838 . C T 2833 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2866,321,0 chrV 51579 . A G 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.213;DP=129;Dels=0.00;FS=12.952;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.550;QD=21.87;ReadPosRankSum=3.390;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:4,125:129:99:2854,324,0 chrV 51706 . T G 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=130;Dels=0.00;FS=3.040;HaplotypeScore=11.3242;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.012;QD=21.49;ReadPosRankSum=2.374;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2827,327,0 chrV 51780 . A G 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=136;Dels=0.00;FS=6.183;HaplotypeScore=8.1508;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.714;QD=22.42;ReadPosRankSum=2.413;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3082,357,0 chrV 51822 . C T 3193 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.81;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3226,360,0 chrV 52448 . A T 281 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=2.93;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:39:314,39,0 chrV 52928 . G A 4522.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.8288;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.50;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4522,498,0 chrV 53433 . G A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=23.48;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3358,357,0 chrV 53456 . G A 2676 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.26;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2709,294,0 chrV 53463 . A G 2340 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.9793;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=14.62;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,157:160:99:2373,264,0 chrV 53537 . G T 4563.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.5667;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=20.46;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4563,487,0 chrV 53618 . T G 5076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.417;QD=22.97;ReadPosRankSum=1.669;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:5076,567,0 chrV 53704 . T C 5557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=254;Dels=0.00;FS=5.706;HaplotypeScore=15.5036;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-1.198;QD=21.88;ReadPosRankSum=1.718;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,252:254:99:5557,624,0 chrV 54747 . C T 2600 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3257;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.01;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2633,288,0 chrV 55483 . G T 3667.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3667,396,0 chrV 55536 . C T 3060 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.08;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3093,339,0 chrV 55836 . G A 3566.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.7068;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.81;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3566,402,0 chrV 55841 . C T 3484.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.26;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3484,372,0 chrV 56129 . A C 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.642;QD=22.36;ReadPosRankSum=1.654;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:4025,459,0 chrV 56424 . A C 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.231;QD=22.92;ReadPosRankSum=1.641;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3506,399,0 chrV 57707 . G A 4040.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.0252;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4040,444,0 chrV 57855 . T A 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=166;Dels=0.00;FS=3.063;HaplotypeScore=17.6483;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.523;QD=20.10;ReadPosRankSum=1.690;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3337,378,0 chrV 58040 . T C 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=190;Dels=0.00;FS=3.057;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.577;QD=21.35;ReadPosRankSum=1.713;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:1,185:190:99:4056,459,0 chrV 58183 . A G 3898.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.40;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3898,441,0 chrV 60057 . A G 5687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=238;Dels=0.00;FS=6.805;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.088;QD=23.89;ReadPosRankSum=2.408;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:5687,648,0 chrV 60147 . G C 4180.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.6771;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.22;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:4180,486,0 chrV 60162 . C T 4495.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=21.82;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4495,504,0 chrV 60357 . T C 4729.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.02;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4729,546,0 chrV 60381 . A G 4216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=219;Dels=0.00;FS=3.477;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-1.636;QD=19.25;ReadPosRankSum=1.716;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:1,215:219:99:4216,489,0 chrV 61018 . G A 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.479;DP=127;Dels=0.01;FS=5.168;HaplotypeScore=103.5517;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;MQRankSum=3.515;QD=0.13;ReadPosRankSum=-5.253;SB=1.24 GT:AD:DP:GQ:PL 1/1:106,18:126:6:47,6,0 chrV 61194 . A G 2196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=118;Dels=0.01;FS=3.402;HaplotypeScore=102.7745;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=0.627;QD=18.61;ReadPosRankSum=1.702;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2229,258,0 chrV 61280 . C T 2632 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.02;FS=0.000;HaplotypeScore=10.8021;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.40;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2665,288,0 chrV 61456 . A G 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=132;Dels=0.00;FS=2.693;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-1.611;QD=21.61;ReadPosRankSum=2.412;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2885,330,0 chrV 61507 . C T 3199 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.1283;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.35;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3232,348,0 chrV 61667 . A G 1675 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.47;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1708,198,0 chrV 61799 . G A 2001 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=21.29;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2034,219,0 chrV 61807 . A G 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;MQRankSum=0.265;QD=21.41;ReadPosRankSum=1.888;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1724,198,0 chrV 61820 . A T 1520 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=21.71;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1553,174,0 chrV 61974 . T G 870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=47;Dels=0.00;FS=13.711;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=31.13;MQ0=0;MQRankSum=-1.511;QD=18.51;ReadPosRankSum=1.659;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,46:47:99:903,102,0 chrV 62025 . A T 1013 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;QD=24.71;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1046,114,0 chrV 62117 . T C 586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.456;DP=25;Dels=0.00;FS=10.969;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.91;MQ0=0;MQRankSum=1.595;QD=23.44;ReadPosRankSum=1.179;SB=-1.901e+01 GT:AD:DP:GQ:PL 1/1:1,24:25:69:619,69,0 chrV 62145 . T A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=15.55;MQ0=8;MQRankSum=1.026;QD=1.73;ReadPosRankSum=-1.026;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:10,2:12:6:52,6,0 chrV 62511 . C T 1341 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.5868;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;QD=17.42;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1374,150,0 chrV 62547 . A T 2254 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=20.49;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2287,258,0 chrV 62717 . C G 3356.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=23.31;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3356,372,0 chrV 62753 . T C 3085 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.1187;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=23.37;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3118,357,0 chrV 62817 . T C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.210;DP=149;Dels=0.00;FS=2.531;HaplotypeScore=140.0438;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=0.858;QD=0.11;ReadPosRankSum=-2.939;SB=-1.088e+02 GT:AD:DP:GQ:PL 1/1:146,3:149:6:48,6,0 chrV 62922 . A G 2717 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.74;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2750,315,0 chrV 62934 . A G 2584 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.19;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2617,297,0 chrV 62954 . A G 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-1.604;QD=20.10;ReadPosRankSum=1.706;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2747,303,0 chrV 63139 . G A 4387.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=18.2338;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.59;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4387,495,0 chrV 63253 . A C 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.312;QD=21.26;ReadPosRankSum=1.712;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:1,172:176:99:3741,429,0 chrV 63498 . G C 4454.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=21.73;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4454,495,0 chrV 63676 . C T 4231.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=18.5574;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.64;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,201:205:99:4231,462,0 chrV 63726 . A C 4205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=194;Dels=0.00;FS=3.879;HaplotypeScore=13.7614;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=1.068;QD=21.68;ReadPosRankSum=1.714;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4205,486,0 chrV 63847 . A C 4203.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.4945;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=4;MQRankSum=0.848;QD=19.83;ReadPosRankSum=0.575;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:2,209:212:99:4203,471,0 chrV 63934 . C T 5031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.011;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.2573;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=1.528;QD=22.76;ReadPosRankSum=0.541;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:5031,539,0 chrV 64152 . C A 1232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.889;DP=128;Dels=0.00;FS=31.319;HaplotypeScore=184.4559;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=1.461;QD=9.62;ReadPosRankSum=3.639;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:13,115:128:86:1265,86,0 chrV 64213 . A G 1967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=5.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.814;QD=16.67;ReadPosRankSum=1.673;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2000,237,0 chrV 64237 . C T 2642 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.02;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2675,300,0 chrV 64295 . T C 2115 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4008;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.72;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2148,240,0 chrV 64355 . A G 3109 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.6976;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.59;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3142,360,0 chrV 64403 . C T 4419.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.66;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4419,489,0 chrV 64421 . A T 4460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=204;Dels=0.00;FS=3.411;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=0.102;QD=21.86;ReadPosRankSum=1.664;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4460,501,0 chrV 64639 . G A 3005 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.78;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3038,339,0 chrV 64710 . T C 2502 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.03;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2535,288,0 chrV 64760 . G A 2528 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.18;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2561,279,0 chrV 64874 . A T 2894 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.1242;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2927,321,0 chrV 65190 . A G 1424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=1.197;QD=21.91;ReadPosRankSum=2.336;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1457,171,0 chrV 65210 . A G 1642 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.78;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1675,192,0 chrV 65284 . T C 978 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=21.6187;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=15.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1011,114,0 chrV 65418 . G A 2640 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.88;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2673,294,0 chrV 65622 . A G 4123.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.04;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4123,477,0 chrV 65952 . A G 3073 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9631;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3106,369,0 chrV 66105 . C T 4451.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.37;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4451,486,0 chrV 66168 . G A 3949.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.2469;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.09;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3949,435,0 chrV 66297 . A T 5247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=215;Dels=0.00;FS=6.414;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.600;QD=24.40;ReadPosRankSum=2.404;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:5247,567,0 chrV 66855 . A G 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.508;QD=20.21;ReadPosRankSum=1.643;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2377,276,0 chrV 67015 . A G 1916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.180;QD=20.17;ReadPosRankSum=2.372;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1949,222,0 chrV 67139 . C T 2022 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.2160;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.36;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2055,228,0 chrV 67311 . T C 2781 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.6957;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2814,321,0 chrV 67758 . G A 3873.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=20.94;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3873,432,0 chrV 67770 . T C 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=182;Dels=0.00;FS=6.087;HaplotypeScore=9.7268;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.365;QD=19.25;ReadPosRankSum=2.917;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:3504,396,0 chrV 68268 . A G 4810.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=19.7781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4810,561,0 chrV 68547 . G A 6343.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=16.9944;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.57;SB=-3.232e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:6343,685,0 chrV 68643 . A G 6061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=318;Dels=0.00;FS=13.863;HaplotypeScore=14.6587;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-0.386;QD=19.06;ReadPosRankSum=3.374;SB=-3.405e+03 GT:AD:DP:GQ:PL 1/1:4,314:318:99:6061,702,0 chrV 68702 . C G 5430.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=19.75;SB=-3.257e+03 GT:AD:DP:GQ:PL 1/1:0,272:275:99:5430,624,0 chrV 68714 . C G 4940.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=9.2626;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=17.77;SB=-3.293e+03 GT:AD:DP:GQ:PL 1/1:0,271:278:99:4940,558,0 chrV 68718 . T G 4734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=9.1354;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=-0.226;QD=17.15;ReadPosRankSum=1.694;SB=-3.235e+03 GT:AD:DP:GQ:PL 1/1:1,275:276:99:4734,546,0 chrV 68794 . G A 6368.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=14.8898;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=19.36;SB=-3.544e+03 GT:AD:DP:GQ:PL 1/1:0,328:329:99:6368,702,0 chrV 68798 . T G 6269.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=11.2953;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=18.94;SB=-3.577e+03 GT:AD:DP:GQ:PL 1/1:0,328:331:99:6269,723,0 chrV 68872 . G C 4914.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=17.4810;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=18.54;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,263:265:99:4914,576,0 chrV 68910 . T C 4854.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.83;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:4854,567,0 chrV 68945 . G T 5274.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=23.23;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5274,576,0 chrV 68996 . G A 4773.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=23.51;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4773,525,0 chrV 69011 . A C 4796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=210;Dels=0.00;FS=2.552;HaplotypeScore=7.4990;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;MQRankSum=0.737;QD=22.84;ReadPosRankSum=2.814;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:3,207:210:99:4796,552,0 chrV 69083 . T C 5126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=22.8612;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.068;QD=22.38;ReadPosRankSum=1.717;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5126,600,0 chrV 69202 . T G 1794 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.2885;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=15.20;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1827,216,0 chrV 69209 . A C 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=3.048;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;MQRankSum=-0.915;QD=12.92;ReadPosRankSum=2.366;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:2,115:119:99:1571,183,0 chrV 69229 . C T 1473 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.67;MQ0=0;QD=12.17;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1506,165,0 chrV 69251 . C T 1805 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=123.1151;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=11.72;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:1838,207,0 chrV 69310 . C T 4363.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.02;FS=0.000;HaplotypeScore=54.1222;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=16.98;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:4363,498,0 chrV 69459 . C T 3538.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=19.02;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3538,390,0 chrV 69468 . T C 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=190;Dels=0.00;FS=3.029;HaplotypeScore=8.1102;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;MQRankSum=-0.058;QD=18.13;ReadPosRankSum=2.346;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3445,399,0 chrV 69568 . T G 4081.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.15;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4081,480,0 chrV 69584 . C T 3887.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.5310;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=20.35;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:3887,426,0 chrV 69592 . G C 3542.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=18.84;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3542,417,0 chrV 69766 . A G 4302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.056;QD=23.38;ReadPosRankSum=1.638;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4302,501,0 chrV 69939 . A G 5704.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=25.5051;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.02;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5704,648,0 chrV 70005 . A G 5803.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.21;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5803,660,0 chrV 70113 . T C 6511.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=22.5435;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.47;SB=-3.672e+03 GT:AD:DP:GQ:PL 1/1:0,318:318:99:6511,750,0 chrV 70335 . A C 5440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=5.1702;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.062;QD=23.55;ReadPosRankSum=2.428;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:2,228:230:99:5440,597,0 chrV 70852 . T C 5749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=23.3354;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.612;QD=21.53;ReadPosRankSum=1.706;SB=-3.142e+03 GT:AD:DP:GQ:PL 1/1:1,262:267:99:5749,660,0 chrV 70912 . A G 5089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.753;DP=249;Dels=0.00;FS=10.305;HaplotypeScore=16.5298;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-2.292;QD=20.44;ReadPosRankSum=2.956;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:3,245:249:99:5089,597,0 chrV 70954 . A G 4546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=7.9536;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=0.330;QD=17.69;ReadPosRankSum=1.692;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:4546,534,0 chrV 70969 . A C 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=249;Dels=0.00;FS=5.543;HaplotypeScore=3.8056;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=0.215;QD=15.46;ReadPosRankSum=2.972;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:3,244:249:99:3849,444,0 chrV 70986 . C T 3453.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=15.28;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:3453,384,0 chrV 71062 . C T 3909.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=18.53;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:3909,438,0 chrV 71182 . G C 2885 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=19.23;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2918,330,0 chrV 71197 . T C 2744 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=19.06;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2777,315,0 chrV 71422 . A C 2892 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=24.10;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2925,330,0 chrV 71485 . G A 2764 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=20.63;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2797,315,0 chrV 71491 . T C 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=138;Dels=0.00;FS=2.794;HaplotypeScore=5.0577;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-1.319;QD=19.70;ReadPosRankSum=2.378;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:2752,321,0 chrV 71524 . A G 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=133;Dels=0.00;FS=12.292;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-0.458;QD=19.45;ReadPosRankSum=2.932;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:3,129:133:99:2620,291,0 chrV 71590 . C T 2379 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.16;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2412,273,0 chrV 71593 . A G 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.239;QD=19.51;ReadPosRankSum=1.523;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2296,261,0 chrV 71842 . T G 2405 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.69;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2438,276,0 chrV 71947 . T C 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.251;DP=119;Dels=0.00;FS=8.473;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.582;QD=23.07;ReadPosRankSum=3.384;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:4,115:119:99:2778,309,0 chrV 71982 . C T 3115 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.25;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3148,348,0 chrV 72016 . A G 2981 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.74;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,145:151:99:3014,342,0 chrV 72037 . A C 3340.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.27;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3340,378,0 chrV 72105 . C T 4360.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.55;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4360,471,0 chrV 72113 . T C 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.754;DP=235;Dels=0.00;FS=2.289;HaplotypeScore=10.8996;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-0.322;QD=17.70;ReadPosRankSum=3.820;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:5,230:235:99:4159,462,0 chrV 72502 . T C 5601.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=21.0383;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.38;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:5601,633,0 chrV 72694 . T G 4548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=9.8575;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-1.658;QD=19.35;ReadPosRankSum=1.687;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:1,232:235:99:4548,534,0 chrV 72712 . A C 4482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=242;Dels=0.00;FS=7.360;HaplotypeScore=13.2502;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.401;QD=18.52;ReadPosRankSum=2.409;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:2,240:242:99:4482,513,0 chrV 72790 . A G 6121.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=17.2731;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.94;SB=-3.267e+03 GT:AD:DP:GQ:PL 1/1:0,279:279:99:6121,716,0 chrV 72885 . C T 7058.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=19.1294;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.22;SB=-3.356e+03 GT:AD:DP:GQ:PL 1/1:0,303:304:99:7058,795,0 chrV 72990 . T G 6245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=302;Dels=0.00;FS=3.283;HaplotypeScore=15.8515;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.445;QD=20.68;ReadPosRankSum=1.697;SB=-3.609e+03 GT:AD:DP:GQ:PL 1/1:1,296:302:99:6245,717,0 chrV 73045 . A G 5907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=11.5480;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.241;QD=20.30;ReadPosRankSum=1.648;SB=-3.389e+03 GT:AD:DP:GQ:PL 1/1:1,288:291:99:5907,692,0 chrV 73131 . G A 6167.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=17.3285;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.51;SB=-3.175e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6167,672,0 chrV 75594 . C T 2590 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2623,285,0 chrV 76382 . A G 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=130;Dels=0.00;FS=6.261;HaplotypeScore=6.4989;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.410;QD=22.12;ReadPosRankSum=2.392;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2909,333,0 chrV 77829 . G A 1884 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1917,219,0 chrV 77902 . T C 2457 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2490,288,0 chrV 78092 . A G 4309.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.7832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4309,512,0 chrV 78155 . G A 4903.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.4704;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.15;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4903,540,0 chrV 78410 . G A 4663.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.4358;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.79;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4663,507,0 chrV 78595 . C G 2981 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.36;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,150:154:99:3014,354,0 chrV 79522 . A G 2022 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.85;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2055,234,0 chrV 79549 . C T 1406 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.68;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1439,159,0 chrV 79927 . A C 4439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.231;DP=207;Dels=0.00;FS=8.245;HaplotypeScore=15.5152;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.232;QD=21.44;ReadPosRankSum=3.384;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:4,202:207:99:4439,522,0 chrV 80081 . C T 3728.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.67;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3728,411,0 chrV 80278 . C G 2963 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2996,348,0 chrV 80430 . G A 4358.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.10;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4358,474,0 chrV 80633 . A G 5306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=246;Dels=0.00;FS=3.024;HaplotypeScore=16.9944;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.558;QD=21.57;ReadPosRankSum=2.419;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:2,242:246:99:5306,621,0 chrV 80728 . C G 3981.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.52;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3981,450,0 chrV 81163 . G A 1910 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.87;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1943,213,0 chrV 81576 . C T 4245.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=16.8065;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.70;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4245,465,0 chrV 82875 . T G 1500 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=14.3408;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=12.10;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:1533,174,0 chrV 82923 . A T 2525 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.70;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2558,270,0 chrV 83036 . C T 3661.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.88;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3661,402,0 chrV 84459 . G A 5766.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=13.5955;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.75;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5766,624,0 chrV 84562 . A G 2966 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.97;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2999,342,0 chrV 84797 . G A 2653 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.75;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2686,300,0 chrV 84821 . A G 2758 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.05;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2791,312,0 chrV 84925 . G A 762 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=94.7178;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=0;QD=6.63;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:87:795,87,0 chrV 84929 . C T 807 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=108.9633;MLEAC=2;MLEAF=1.00;MQ=35.80;MQ0=0;QD=6.51;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:90:840,90,0 chrV 85009 . G A 4294.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.25;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4294,465,0 chrV 85155 . C T 5606.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=24.06;SB=-3.139e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5606,609,0 chrV 85578 . C T 5512.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=21.4871;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,241:244:99:5512,598,0 chrV 85693 . T C 7086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=34.7170;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.829;QD=22.14;ReadPosRankSum=2.380;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:2,316:320:99:7086,827,0 chrV 86051 . A G 4553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=212;Dels=0.00;FS=2.770;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.871;QD=21.48;ReadPosRankSum=2.426;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:2,208:212:99:4553,507,0 chrV 86381 . C T 1774 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.03;FS=0.000;HaplotypeScore=9.1876;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=19.71;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1807,195,0 chrV 86464 . G T 972 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.68;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1005,114,0 chrV 86583 . A G 2215 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.32;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2248,252,0 chrV 86596 . T C 2417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=3.214;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.111;QD=21.77;ReadPosRankSum=1.573;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2450,288,0 chrV 86742 . A T 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.452;HaplotypeScore=8.7828;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-1.034;QD=22.53;ReadPosRankSum=1.676;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2827,312,0 chrV 86770 . A G 2750 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.7916;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.18;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2783,312,0 chrV 86861 . T C 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=130;Dels=0.00;FS=2.672;HaplotypeScore=9.5082;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.432;QD=22.86;ReadPosRankSum=2.334;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:3005,342,0 chrV 86888 . T C 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.751;DP=154;Dels=0.00;FS=7.669;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-0.398;QD=20.60;ReadPosRankSum=3.721;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:5,149:154:99:3206,357,0 chrV 86904 . T G 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.132;DP=171;Dels=0.00;FS=5.255;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-1.742;QD=18.71;ReadPosRankSum=3.316;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:4,167:171:99:3233,381,0 chrV 87165 . C T 5565.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=19.8330;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.35;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5565,606,0 chrV 87554 . T C 5826.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=24.5983;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.44;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,281:285:99:5826,678,0 chrV 87608 . C T 4440.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=6.2455;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=17.90;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:4440,498,0 chrV 87611 . C T 4174.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=17.18;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,240:243:99:4174,453,0 chrV 88061 . C T 4679.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.76;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4679,507,0 chrV 88121 . T C 3944.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.2295;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.34;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3944,459,0 chrV 88265 . C T 4810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.9910;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-0.259;QD=23.13;ReadPosRankSum=-1.565;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4810,519,0 chrV 88403 . A T 5487.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=9.7246;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.49;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5487,618,0 chrV 88481 . C G 5082.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.8384;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.81;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,229:233:99:5082,594,0 chrV 88539 . C T 4062.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=20.01;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4062,444,0 chrV 88547 . C T 4089.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.85;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4089,441,0 chrV 88700 . A G 4307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=198;Dels=0.00;FS=2.890;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.433;QD=21.75;ReadPosRankSum=2.412;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4307,495,0 chrV 88751 . C T 3621.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=15.9583;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.93;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3621,393,0 chrV 88976 . G A 3806.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3806,432,0 chrV 89321 . T C 7294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.542;DP=349;Dels=0.00;FS=7.484;HaplotypeScore=20.7297;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.737;QD=20.90;ReadPosRankSum=3.828;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:5,343:349:99:7294,846,0 chrV 89738 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.1576;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.23;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2967,324,0 chrV 89860 . G A 126.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.975;DP=111;Dels=0.00;FS=5.361;HaplotypeScore=95.3695;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-2.104;QD=1.14;ReadPosRankSum=-3.552;SB=-3.913e+01 GT:AD:DP:GQ:PL 1/1:103,8:111:18:159,18,0 chrV 89953 . G T 3803.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.62;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3803,414,0 chrV 90032 . G A 5606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.6145;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.467;QD=25.14;ReadPosRankSum=-0.324;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:2,218:223:99:5606,588,0 chrV 90218 . A C 5965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.939;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=14.3992;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.774;QD=21.93;ReadPosRankSum=3.008;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:4,266:272:99:5965,681,0 chrV 90503 . G A 3367.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6663;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.06;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3367,369,0 chrV 90830 . A G 3785.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.40;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3785,423,0 chrV 91109 . C T 4494.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.1314;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.78;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4494,501,0 chrV 91196 . C T 5203.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=6.8573;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.86;SB=-3.074e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5203,567,0 chrV 91214 . T C 4862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.515;DP=241;Dels=0.00;FS=3.029;HaplotypeScore=4.7776;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.138;QD=20.17;ReadPosRankSum=1.645;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:1,238:241:99:4862,558,0 chrV 91332 . C G 4657.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.18;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,204:210:99:4657,528,0 chrV 91512 . G A 4465.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.67;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4465,480,0 chrV 91637 . C T 5029.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5029,558,0 chrV 91715 . C T 4787.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.69;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4787,525,0 chrV 91751 . G A 4178.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4178,471,0 chrV 91977 . T C 3336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.003;DP=161;Dels=0.00;FS=9.187;HaplotypeScore=21.3688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.755;QD=20.72;ReadPosRankSum=3.383;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:4,157:161:99:3336,378,0 chrV 92582 . G A 6550.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=12.6942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,262:264:99:6550,712,0 chrV 92864 . A G 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=194;Dels=0.00;FS=2.820;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.172;QD=21.45;ReadPosRankSum=2.373;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4162,468,0 chrV 93590 . A G 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=3.326;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.313;QD=23.29;ReadPosRankSum=1.710;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3656,420,0 chrV 93878 . G C 2834 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.67;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2867,321,0 chrV 94089 . G A 2864 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=23.10;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2897,321,0 chrV 94351 . G A 1945 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.26;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1978,225,0 chrV 94534 . T A 2415 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.57;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2448,261,0 chrV 94559 . T C 2372 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.56;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2405,273,0 chrV 94592 . A G 2338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.667;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.820;QD=20.33;ReadPosRankSum=1.641;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2371,264,0 chrV 94725 . G A 3742.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.1314;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.30;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3742,423,0 chrV 95228 . C T 4667.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.1131;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.22;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4667,507,0 chrV 95237 . A G 4333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=201;Dels=0.00;FS=6.534;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.324;QD=21.56;ReadPosRankSum=2.388;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4333,498,0 chrV 95330 . G A 4762.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:4762,537,0 chrV 95441 . A G 4387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=194;Dels=0.00;FS=3.218;HaplotypeScore=18.1762;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=1.445;QD=22.61;ReadPosRankSum=1.714;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4387,492,0 chrV 95696 . C T 4058.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.80;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4058,441,0 chrV 95885 . C T 2436 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.5566;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.82;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2469,285,0 chrV 95918 . A G 2023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.204;QD=19.64;ReadPosRankSum=1.698;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2056,231,0 chrV 96109 . C T 3054 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3087,345,0 chrV 96260 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.8721;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.07;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3308,369,0 chrV 96428 . G A 2356 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.85;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2389,264,0 chrV 96439 . G T 2509 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.44;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2542,273,0 chrV 96491 . T C 2923 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.16;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2956,330,0 chrV 96764 . G T 2266 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2299,255,0 chrV 97220 . T G 3487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.4158;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.022;QD=22.35;ReadPosRankSum=1.665;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3487,396,0 chrV 97322 . C T 3296.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.60;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3296,360,0 chrV 97359 . A T 3218.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.60;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3251,357,0 chrV 97416 . G A 2723 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.79;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2756,309,0 chrV 97752 . A G 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.105;HaplotypeScore=4.3589;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.312;QD=18.22;ReadPosRankSum=1.707;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2566,297,0 chrV 97755 . T A 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.049;DP=142;Dels=0.00;FS=3.039;HaplotypeScore=3.5702;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-1.717;QD=18.25;ReadPosRankSum=1.247;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:2624,262,0 chrV 98270 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.44;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3559,390,0 chrV 98283 . A G 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=161;Dels=0.00;FS=3.021;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.069;QD=18.20;ReadPosRankSum=2.357;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:2964,342,0 chrV 98381 . T C 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.340;QD=21.98;ReadPosRankSum=1.711;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3736,426,0 chrV 98507 . T A 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=137;Dels=0.00;FS=3.042;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=1.086;QD=23.60;ReadPosRankSum=2.306;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3265,354,0 chrV 98854 . A G 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.807;DP=188;Dels=0.00;FS=12.097;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;MQRankSum=-1.466;QD=21.31;ReadPosRankSum=3.682;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:5,183:188:99:4007,453,0 chrV 98856 . A G 3775.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=20.63;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3775,438,0 chrV 98872 . T C 4161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=206;Dels=0.00;FS=11.019;HaplotypeScore=4.2448;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;MQRankSum=1.356;QD=20.20;ReadPosRankSum=2.927;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:3,203:206:99:4161,474,0 chrV 98893 . A G 4865.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=20.88;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4865,540,0 chrV 98906 . C G 5452.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=20.50;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:5452,621,0 chrV 98961 . C T 6904.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=25.4016;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=22.27;SB=-3.830e+03 GT:AD:DP:GQ:PL 1/1:0,306:310:99:6904,762,0 chrV 98997 . C T 5821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;MQRankSum=-1.440;QD=20.28;ReadPosRankSum=-0.383;SB=-3.069e+03 GT:AD:DP:GQ:PL 1/1:1,284:287:99:5821,642,0 chrV 98999 . G A 5769.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=20.39;SB=-3.025e+03 GT:AD:DP:GQ:PL 1/1:0,282:283:99:5769,633,0 chrV 99031 . A G 5422.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=16.5856;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=18.76;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:0,288:289:99:5422,624,0 chrV 99091 . C G 5523.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=6.2470;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=20.53;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,267:269:99:5523,633,0 chrV 99120 . G A 4176.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;QD=16.77;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:4176,471,0 chrV 99124 . C T 3919.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=15.25;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:3919,450,0 chrV 99132 . A G 3787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.430;DP=250;Dels=0.00;FS=6.730;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;MQRankSum=-1.513;QD=15.15;ReadPosRankSum=2.381;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:2,247:250:99:3787,446,0 chrV 99164 . A C 3594.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.54;MQ0=0;QD=13.07;SB=-3.400e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:3594,411,0 chrV 99167 . C T 3768.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=0;QD=13.96;SB=-3.615e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:3768,408,0 chrV 99179 . T C 4102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=277;Dels=0.00;FS=3.337;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=42.35;MQ0=0;MQRankSum=-0.866;QD=14.81;ReadPosRankSum=1.682;SB=-3.291e+03 GT:AD:DP:GQ:PL 1/1:1,276:277:99:4102,465,0 chrV 99237 . G A 6244.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=16.6716;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=20.88;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:0,298:299:99:6244,681,0 chrV 99302 . A G 5431.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=21.38;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5431,621,0 chrV 99312 . G T 5104.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=21.36;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5104,579,0 chrV 99441 . T G 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=174;Dels=0.00;FS=4.201;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.760;QD=20.64;ReadPosRankSum=1.712;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:3592,414,0 chrV 99522 . G A 4166.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.02;FS=0.000;HaplotypeScore=32.1667;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.47;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4166,471,0 chrV 99614 . A T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.0631;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.63;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3342,372,0 chrV 100074 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=22.63;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3575,384,0 chrV 100108 . A T 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=3.245;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=-1.641;QD=23.50;ReadPosRankSum=1.702;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2712,294,0 chrV 100213 . T A 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=85;Dels=0.00;FS=7.533;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=0.183;QD=22.09;ReadPosRankSum=1.651;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1911,207,0 chrV 100307 . T C 1503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=4.171;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;MQRankSum=0.064;QD=18.33;ReadPosRankSum=1.689;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1536,171,0 chrV 100312 . G C 1569 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.64;MQ0=0;QD=18.90;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1602,180,0 chrV 100352 . A G 1137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=84;Dels=0.00;FS=6.150;HaplotypeScore=7.0024;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;MQRankSum=-2.362;QD=13.54;ReadPosRankSum=2.917;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:3,81:84:99:1170,132,0 chrV 100360 . C T 1030 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=2.9531;MLEAC=2;MLEAF=1.00;MQ=29.66;MQ0=0;QD=14.51;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1063,117,0 chrV 100366 . T C 898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.546;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.9531;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=-1.477;QD=12.65;ReadPosRankSum=-0.295;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:931,108,0 chrV 100372 . A T 992 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.9866;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=13.97;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1025,111,0 chrV 100389 . T G 732 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=12.00;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:90:765,90,0 chrV 100391 . A G 788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=4.429;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;MQRankSum=0.199;QD=12.92;ReadPosRankSum=1.675;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:96:821,96,0 chrV 100400 . T A 841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.736;DP=66;Dels=0.00;FS=2.635;HaplotypeScore=2.9224;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=0;MQRankSum=-2.486;QD=12.74;ReadPosRankSum=2.861;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:3,62:66:99:874,99,0 chrV 100406 . T G 1009 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=39.02;MQ0=0;QD=14.84;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1042,120,0 chrV 100451 . A G 1282 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=19.13;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1315,147,0 chrV 100550 . T G 1304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.266;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.049;QD=18.63;ReadPosRankSum=1.683;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1337,153,0 chrV 100583 . A C 193.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.679;DP=81;Dels=0.00;FS=14.293;HaplotypeScore=15.8711;MLEAC=1;MLEAF=0.500;MQ=44.46;MQ0=0;MQRankSum=2.354;QD=2.38;ReadPosRankSum=-3.853;SB=-6.523e-03 GT:AD:DP:GQ:PL 0/1:67,14:81:58:223,0,58 chrV 100635 . T G 1952 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.6050;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=19.72;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1985,231,0 chrV 100681 . A T 2974 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.53;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3007,324,0 chrV 101285 . T A 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=115;Dels=0.00;FS=4.172;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.497;QD=21.28;ReadPosRankSum=1.581;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2480,267,0 chrV 101365 . T C 2772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=3.082;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.619;QD=22.72;ReadPosRankSum=1.675;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2805,315,0 chrV 101643 . T A 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=89;Dels=0.00;FS=6.484;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=0.448;QD=21.30;ReadPosRankSum=1.693;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1929,213,0 chrV 101687 . A G 1418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=73;Dels=0.00;FS=2.824;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.573;QD=19.42;ReadPosRankSum=2.381;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:2,69:73:99:1451,165,0 chrV 101819 . C T 1645 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1678,189,0 chrV 102020 . G A 4147.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.1924;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.30;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4147,453,0 chrV 102185 . T C 3176 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.4597;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.60;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3209,360,0 chrV 102203 . A G 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=165;Dels=0.00;FS=2.585;HaplotypeScore=5.9023;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.652;QD=20.03;ReadPosRankSum=1.250;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3305,375,0 chrV 102537 . G T 3938.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.72;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3938,423,0 chrV 102887 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=15.0629;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.381;QD=22.04;ReadPosRankSum=1.662;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3284,369,0 chrV 102999 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.64;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3381,369,0 chrV 103136 . A G 3294.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.41;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3294,369,0 chrV 103244 . G C 3109 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.6187;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.37;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3142,366,0 chrV 103272 . A T 3304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=145;Dels=0.00;FS=3.030;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=0.653;QD=22.79;ReadPosRankSum=2.365;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3304,357,0 chrV 103294 . A G 2880 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.15;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2913,327,0 chrV 103548 . G A 3599.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.99;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3599,387,0 chrV 103937 . A G 4010.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4010,465,0 chrV 104269 . T C 2344 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.93;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2377,261,0 chrV 104270 . T C 2314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=4.058;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=0.000;QD=20.66;ReadPosRankSum=1.701;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2347,264,0 chrV 104393 . G A 3136 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=15.9235;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.40;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3169,342,0 chrV 104648 . T A 2287 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.58;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2320,252,0 chrV 105087 . G A 3864.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.2972;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.56;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3864,414,0 chrV 105192 . G A 2924 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=20.17;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2957,324,0 chrV 105203 . G A 2971 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=20.49;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3004,327,0 chrV 105311 . A C 2572 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7440;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=19.48;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2605,285,0 chrV 105319 . T C 2280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=135;Dels=0.00;FS=3.027;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=-0.743;QD=16.89;ReadPosRankSum=2.413;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2313,264,0 chrV 105345 . G T 2276 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=17.92;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2309,246,0 chrV 105369 . C T 2288 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=17.60;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2321,252,0 chrV 105437 . G A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.68;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3529,390,0 chrV 105493 . A G 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=164;Dels=0.00;FS=8.054;HaplotypeScore=9.9331;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=0.221;QD=22.97;ReadPosRankSum=2.297;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:2,159:164:99:3767,426,0 chrV 105743 . G A 4030.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.46;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4030,435,0 chrV 105746 . A G 3993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=196;Dels=0.00;FS=3.078;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.933;QD=20.37;ReadPosRankSum=1.714;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:3993,447,0 chrV 105816 . A G 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=187;Dels=0.00;FS=7.251;HaplotypeScore=8.2458;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.601;QD=18.59;ReadPosRankSum=2.423;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:3476,390,0 chrV 105842 . G A 3923.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.2460;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.81;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:3923,441,0 chrV 105854 . G C 3997.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.9537;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.94;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:3997,465,0 chrV 106188 . G A 4553.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.01;FS=0.000;HaplotypeScore=15.6962;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.11;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4553,504,0 chrV 106333 . G T 4124.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.01;FS=0.000;HaplotypeScore=18.8762;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.41;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4124,462,0 chrV 106448 . T C 2872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=0.285;QD=19.67;ReadPosRankSum=1.708;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2905,327,0 chrV 106478 . G A 2691 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=18.18;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2724,297,0 chrV 106504 . G A 2256 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=16.35;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2289,246,0 chrV 106512 . A C 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=120.8386;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;MQRankSum=1.754;QD=13.65;ReadPosRankSum=3.853;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:6,134:140:99:1944,225,0 chrV 106597 . G A 1836 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=13.40;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1869,213,0 chrV 106607 . A G 1889 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;QD=14.31;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1922,219,0 chrV 106609 . A G 1766 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.52;MQ0=0;QD=13.28;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:1799,204,0 chrV 106618 . A G 1763 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;QD=12.96;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:1796,210,0 chrV 106822 . T C 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.8901;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-0.136;QD=22.16;ReadPosRankSum=1.669;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3656,414,0 chrV 106924 . C T 4157.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=17.8103;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.99;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4157,459,0 chrV 107341 . C G 3816.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.31;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3816,426,0 chrV 107574 . A G 4303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=219;Dels=0.00;FS=3.299;HaplotypeScore=5.4196;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.842;QD=19.65;ReadPosRankSum=1.716;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:4303,492,0 chrV 107580 . G T 4288.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.23;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4288,474,0 chrV 107634 . A G 4319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=8.9226;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.458;QD=19.28;ReadPosRankSum=1.685;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:4319,489,0 chrV 107814 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.007;DP=175;Dels=0.00;FS=2.563;HaplotypeScore=11.6670;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=1.804;QD=19.59;ReadPosRankSum=1.621;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3428,399,0 chrV 107929 . A G 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.015;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.159;QD=22.62;ReadPosRankSum=1.708;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3325,350,0 chrV 108381 . G T 1578 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.23;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1611,177,0 chrV 108750 . T C 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=110;Dels=0.00;FS=2.763;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.513;QD=22.41;ReadPosRankSum=2.404;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:2,106:110:99:2498,288,0 chrV 109005 . A G 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=206;Dels=0.00;FS=2.719;HaplotypeScore=17.5455;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.483;QD=19.47;ReadPosRankSum=2.426;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4011,459,0 chrV 109126 . C T 3760.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.50;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3760,405,0 chrV 109461 . G A 4085.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.57;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4085,441,0 chrV 109559 . G A 4402.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.1824;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4402,474,0 chrV 110594 . A T 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=4.097;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.230;QD=23.08;ReadPosRankSum=1.653;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3057,336,0 chrV 110916 . T C 3439.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.4912;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.05;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3439,381,0 chrV 110985 . G A 2915 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.70;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2948,327,0 chrV 111022 . A T 3058 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.08;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3091,342,0 chrV 111083 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=-0.119;QD=22.14;ReadPosRankSum=1.708;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3265,375,0 chrV 111334 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.99;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3267,369,0 chrV 111431 . G A 4435.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.3781;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.50;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4435,480,0 chrV 111615 . C T 3525.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.98;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3525,399,0 chrV 111780 . C T 3720.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.7224;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.54;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3720,405,0 chrV 112464 . A G 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=157;Dels=0.00;FS=2.891;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.524;QD=22.76;ReadPosRankSum=2.403;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3574,408,0 chrV 113013 . T C 3333.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3333,381,0 chrV 113079 . C T 2884 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,125:129:99:2917,318,0 chrV 113148 . G A 3641.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3641,396,0 chrV 113457 . A G 3689.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.20;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3689,420,0 chrV 113919 . A C 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.611;HaplotypeScore=6.3550;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.096;QD=24.43;ReadPosRankSum=1.709;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3615,408,0 chrV 113964 . C T 3765.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.83;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3765,417,0 chrV 114096 . G A 2886 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7498;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.47;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:2919,333,0 chrV 114726 . A G 2333 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.81;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2366,264,0 chrV 114867 . T C 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=3.900;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.962;QD=22.55;ReadPosRankSum=1.700;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2468,279,0 chrV 114984 . T C 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=3.488;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.516;QD=22.75;ReadPosRankSum=1.696;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2217,258,0 chrV 115024 . T C 1933 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=20.56;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1966,222,0 chrV 115035 . G A 1789 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.33;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1822,201,0 chrV 115090 . C T 2553 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.82;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2586,276,0 chrV 115542 . G C 3761.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.07;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3761,423,0 chrV 116577 . G A 3918.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.77;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3918,441,0 chrV 116848 . T G 3468.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.67;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3468,387,0 chrV 117072 . C T 2220 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.7589;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.00;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2253,246,0 chrV 117134 . T C 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=13.9835;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-2.137;QD=22.55;ReadPosRankSum=2.366;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2716,309,0 chrV 117174 . G A 3758.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.1009;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3758,402,0 chrV 117288 . T C 4167.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.80;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4167,462,0 chrV 117318 . C T 4384.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.6953;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.72;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4384,486,0 chrV 117889 . C T 4868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=206;Dels=0.00;FS=3.139;HaplotypeScore=12.1462;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.925;QD=23.63;ReadPosRankSum=0.942;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4868,528,0 chrV 118141 . A G 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=0.044;QD=17.21;ReadPosRankSum=1.688;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2717,306,0 chrV 118149 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=17.46;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2670,294,0 chrV 118211 . G A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=149.4402;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=0.12;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:6:51,6,0 chrV 118286 . T C 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=4.195;HaplotypeScore=5.6747;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=0.391;QD=19.58;ReadPosRankSum=1.710;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,154:158:99:3127,357,0 chrV 118301 . G A 3073 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.03;FS=0.000;HaplotypeScore=13.3734;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=20.08;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3106,339,0 chrV 118304 . A G 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=149;Dels=0.00;FS=2.876;HaplotypeScore=13.9641;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=0.404;QD=20.30;ReadPosRankSum=2.400;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3058,354,0 chrV 118388 . G T 1569 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=23.07;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1602,174,0 chrV 118421 . T C 1020 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;QD=18.21;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1053,126,0 chrV 118583 . T C 194.01 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=10.78;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,17:18:27:227,27,0 chrV 118743 . G A 3114 filter AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.5780;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,129:135:99:3147,363,0 chrV 119169 . T A 6023.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=15.0980;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=22.73;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:6023,657,0 chrV 119201 . C T 5237.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=18.5013;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=23.48;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5237,570,0 chrV 119334 . C T 4480.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=22.86;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4480,504,0 chrV 119379 . A G 3699.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.0143;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;QD=18.97;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3699,426,0 chrV 119394 . G A 3506.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=17.98;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3506,381,0 chrV 119407 . G A 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=197;Dels=0.00;FS=9.166;HaplotypeScore=5.0153;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;MQRankSum=-1.892;QD=14.97;ReadPosRankSum=2.552;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:3,192:197:99:2982,327,0 chrV 119409 . A G 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.074;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.0153;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;MQRankSum=-0.445;QD=14.69;ReadPosRankSum=3.832;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:6,189:195:99:2898,333,0 chrV 119453 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=17.26;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3332,390,0 chrV 119517 . T C 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=4.416;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.074;QD=21.12;ReadPosRankSum=1.714;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3970,465,0 chrV 119673 . A G 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=134;Dels=0.00;FS=2.890;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=1.987;QD=20.04;ReadPosRankSum=2.394;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2718,315,0 chrV 119706 . G A 2890 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.76;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2923,324,0 chrV 119741 . T A 2936 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.94;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2969,324,0 chrV 120078 . G C 2422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.1108;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-0.758;QD=14.50;ReadPosRankSum=1.667;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,159:167:99:2455,273,0 chrV 120081 . C G 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.764;DP=168;Dels=0.00;FS=10.814;HaplotypeScore=9.2162;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-1.717;QD=14.00;ReadPosRankSum=3.742;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:6,160:168:99:2385,279,0 chrV 120129 . A G 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=195;Dels=0.00;FS=11.542;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=0.036;QD=18.18;ReadPosRankSum=2.830;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:3,192:195:99:3546,411,0 chrV 120210 . G A 3534.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=21.55;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3534,384,0 chrV 120365 . A T 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.720;DP=126;Dels=0.00;FS=2.580;HaplotypeScore=113.0584;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;MQRankSum=-0.944;QD=18.74;ReadPosRankSum=2.944;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2394,276,0 chrV 120392 . T A 2728 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=20.36;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2761,306,0 chrV 120417 . A G 2311 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=17.78;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2344,264,0 chrV 120418 . A G 2317 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=17.82;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2350,264,0 chrV 120451 . G A 2477 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.3437;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=18.91;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2510,279,0 chrV 120795 . G A 4863.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.4470;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.38;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4863,531,0 chrV 120900 . A T 3783.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.9319;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.37;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3783,420,0 chrV 121032 . T C 3042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2263;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=1.360;QD=20.01;ReadPosRankSum=1.709;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3075,357,0 chrV 121077 . T C 3361.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=23.02;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3361,384,0 chrV 121289 . C T 2964 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=20.87;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2997,330,0 chrV 121304 . T C 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=149;Dels=0.00;FS=3.749;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;MQRankSum=-1.002;QD=18.50;ReadPosRankSum=1.614;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:2790,315,0 chrV 121308 . A T 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;MQRankSum=-0.561;QD=19.10;ReadPosRankSum=1.683;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2745,303,0 chrV 121351 . G A 2693 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.0442;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=18.83;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2726,306,0 chrV 121371 . T A 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.256;DP=147;Dels=0.00;FS=5.207;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=0.982;QD=20.67;ReadPosRankSum=3.387;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:4,143:147:99:3072,327,0 chrV 122148 . C T 2969 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3002,327,0 chrV 122229 . T C 1918 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.56;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1951,222,0 chrV 122325 . A C 2123 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2156,237,0 chrV 122712 . T C 2845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.902;QD=23.51;ReadPosRankSum=1.703;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2878,330,0 chrV 123266 . G A 4449.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.8562;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.14;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4449,489,0 chrV 123378 . T C 3661.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.88;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3661,402,0 chrV 123513 . C G 5565.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=21.5948;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.62;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,235:246:99:5565,627,0 chrV 123948 . G A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.19;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3453,390,0 chrV 123977 . G A 3394.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.6144;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.48;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3394,366,0 chrV 124202 . C T 3987.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.59;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3987,429,0 chrV 124517 . C T 3523.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.4580;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.75;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3523,378,0 chrV 124763 . T C 5068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=268;Dels=0.00;FS=2.968;HaplotypeScore=7.1556;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.097;QD=18.91;ReadPosRankSum=2.358;SB=-3.077e+03 GT:AD:DP:GQ:PL 1/1:2,265:268:99:5068,579,0 chrV 124970 . A G 5052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=244;Dels=0.00;FS=2.819;HaplotypeScore=17.1959;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-1.715;QD=20.70;ReadPosRankSum=2.409;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:2,242:244:99:5052,588,0 chrV 125141 . A G 4505.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.08;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4505,528,0 chrV 125211 . A T 3558.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.4017;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=20.45;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3558,399,0 chrV 125221 . C G 3157 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=17.54;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,175:180:99:3190,354,0 chrV 125222 . T C 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=179;Dels=0.00;FS=6.345;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;MQRankSum=-1.415;QD=17.72;ReadPosRankSum=2.408;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3205,357,0 chrV 125279 . C T 3169 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=6.1366;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=13.26;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,235:239:99:3202,354,0 chrV 125291 . T A 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.788;DP=237;Dels=0.00;FS=20.604;HaplotypeScore=2.9620;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;MQRankSum=-0.999;QD=13.43;ReadPosRankSum=3.788;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:5,232:237:99:3215,354,0 chrV 125295 . G T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=2.9620;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=14.37;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:3406,366,0 chrV 125368 . A T 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=160;Dels=0.00;FS=3.032;HaplotypeScore=6.7829;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=-0.194;QD=18.70;ReadPosRankSum=2.418;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3025,333,0 chrV 125388 . A G 2485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.369;DP=159;Dels=0.00;FS=12.672;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;MQRankSum=-0.611;QD=15.63;ReadPosRankSum=3.403;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:4,152:159:99:2518,288,0 chrV 125396 . G A 2808 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=16.71;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:2841,312,0 chrV 125566 . C G 3880.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.30;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,170:174:99:3880,444,0 chrV 125706 . G T 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=178;Dels=0.00;FS=3.261;HaplotypeScore=14.9408;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.545;QD=21.01;ReadPosRankSum=-0.311;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3739,408,0 chrV 125756 . T A 4081.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.55;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4081,441,0 chrV 126071 . G A 4102.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.2079;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.44;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4102,450,0 chrV 126254 . T C 3383.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.70;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3383,381,0 chrV 126316 . T G 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=129;Dels=0.00;FS=7.775;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.458;QD=21.36;ReadPosRankSum=2.412;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2788,318,0 chrV 126600 . C T 4159.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.46;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4159,456,0 chrV 126652 . A G 3519.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.10;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3519,387,0 chrV 127024 . G A 3993.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.43;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3993,435,0 chrV 127042 . T C 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=190;Dels=0.00;FS=2.885;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=-0.409;QD=19.02;ReadPosRankSum=2.424;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:3614,414,0 chrV 127050 . A G 3426.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=18.72;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3426,390,0 chrV 127286 . T C 5012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=234;Dels=0.00;FS=6.427;HaplotypeScore=10.0243;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.571;QD=21.42;ReadPosRankSum=2.332;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:2,228:234:99:5012,570,0 chrV 127447 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.86;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3547,402,0 chrV 127516 . C T 4135.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.0537;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.99;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4135,471,0 chrV 127548 . G T 4283.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4283,471,0 chrV 127687 . G C 3340.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.52;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3340,381,0 chrV 128953 . T C 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=124;Dels=0.00;FS=5.573;HaplotypeScore=10.5405;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.797;QD=21.14;ReadPosRankSum=2.846;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:99:2654,306,0 chrV 129112 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.34;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2740,294,0 chrV 129286 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.19;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2740,306,0 chrV 129322 . T C 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.575;QD=22.65;ReadPosRankSum=1.706;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3023,339,0 chrV 129481 . C T 3995.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.1479;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.07;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3995,450,0 chrV 129523 . A G 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=179;Dels=0.00;FS=3.479;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.945;QD=21.26;ReadPosRankSum=1.634;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,175:179:99:3806,447,0 chrV 129628 . A G 4461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=193;Dels=0.00;FS=2.820;HaplotypeScore=10.5337;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.274;QD=23.11;ReadPosRankSum=2.424;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4461,504,0 chrV 130108 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3699,405,0 chrV 130174 . T C 3185 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4989;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.27;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3218,363,0 chrV 130380 . T C 2597 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.39;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2630,303,0 chrV 130887 . G A 1913 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.99;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1946,216,0 chrV 131173 . C A 2099 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=18.74;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2132,228,0 chrV 131177 . A C 1930 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5983;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=17.39;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1963,225,0 chrV 131250 . T G 3145 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.11;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3178,360,0 chrV 131539 . G A 2488 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.90;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2521,285,0 chrV 131599 . T C 2187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=3.693;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=0.157;QD=19.88;ReadPosRankSum=1.638;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2220,249,0 chrV 132579 . T C 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.849;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=60.5236;MLEAC=1;MLEAF=0.500;MQ=32.72;MQ0=0;MQRankSum=-0.557;QD=0.18;ReadPosRankSum=5.367;SB=-8.580e+02 GT:AD:DP:GQ:PL 0/1:22,125:147:40:56,0,40 chrV 132691 . T C 3538.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.25;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3538,405,0 chrV 132767 . T A 5041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;MQRankSum=0.953;QD=25.21;ReadPosRankSum=1.697;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:5041,543,0 chrV 132795 . A G 4912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=209;Dels=0.00;FS=7.558;HaplotypeScore=14.6194;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;MQRankSum=0.967;QD=23.50;ReadPosRankSum=2.343;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:2,205:209:99:4912,555,0 chrV 133048 . T C 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=191;Dels=0.00;FS=4.122;HaplotypeScore=14.6697;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.633;QD=19.06;ReadPosRankSum=1.602;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,186:191:99:3641,417,0 chrV 133078 . T C 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=192;Dels=0.00;FS=7.812;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=1.652;QD=20.32;ReadPosRankSum=2.372;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:3902,438,0 chrV 133173 . G A 5039.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.5351;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.50;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5039,564,0 chrV 133566 . C T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.78;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3442,384,0 chrV 134484 . G A 6514.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=12.7880;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.43;SB=-3.449e+03 GT:AD:DP:GQ:PL 1/1:0,277:278:99:6514,703,0 chrV 134795 . T C 5531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=281;Dels=0.00;FS=5.193;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-1.140;QD=19.68;ReadPosRankSum=1.707;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:1,280:281:99:5531,618,0 chrV 134805 . C T 5475.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.08;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,284:287:99:5475,600,0 chrV 134844 . T G 4573.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=14.2785;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=18.51;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:4573,522,0 chrV 135358 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=21.76;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1730,198,0 chrV 135537 . C G 1561 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=21.99;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1594,180,0 chrV 135550 . T C 1373 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.71;MQ0=0;QD=21.45;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1406,156,0 chrV 135614 . G A,T 63.22 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.495;DP=8;Dels=0.00;FS=10.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=33.64;MQ0=1;MQRankSum=-0.922;QD=7.90;ReadPosRankSum=1.495;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:2,2,4:8:41:123,73,67,50,0,41 chrV 135650 . G T 133.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.05;MQ0=1;QD=16.64;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:18:166,18,0 chrV 135652 . G T 130.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.05;MQ0=1;QD=16.27;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:18:163,18,0 chrV 135654 . T A 131.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.50;MQ0=2;QD=14.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,7:9:18:164,18,0 chrV 135661 . T A 126.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.20;MQ0=3;QD=12.61;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:1,9:10:18:159,18,0 chrV 135859 . T C 56.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.881;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=14.16;MQ0=24;MQRankSum=1.652;QD=1.70;ReadPosRankSum=0.000;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:27,6:33:63:86,0,63 chrV 135940 . G A 16.15 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=3.9331;MLEAC=1;MLEAF=0.500;MQ=20.91;MQ0=3;MQRankSum=1.026;QD=2.31;ReadPosRankSum=1.026;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:5,2:7:18:46,0,18 chrV 136024 . T C 207.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=34.33;MQ0=0;MQRankSum=-2.148;QD=2.11;ReadPosRankSum=2.400;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:2,96:98:27:240,27,0 chrV 136185 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=24.21;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2745,306,0 chrV 136262 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.02;FS=0.000;HaplotypeScore=11.1718;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=21.29;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2950,318,0 chrV 136376 . C T 2593 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.43;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2626,285,0 chrV 136419 . T A 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=122;Dels=0.00;FS=3.119;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.732;QD=22.53;ReadPosRankSum=1.675;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2782,303,0 chrV 136461 . C G 2698 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.48;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2731,312,0 chrV 136581 . T C 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.336;QD=21.60;ReadPosRankSum=1.680;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2928,333,0 chrV 136691 . C T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=25.24;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3509,378,0 chrV 136730 . G A 2785 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.26;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2818,312,0 chrV 136755 . A G 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=150;Dels=0.00;FS=3.632;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.085;QD=20.29;ReadPosRankSum=1.709;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3077,354,0 chrV 137525 . A G 2378 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.8431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2411,276,0 chrV 137752 . C T 3003 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=16.3736;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=22.58;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3036,336,0 chrV 137844 . G A 2948 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=6.4868;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.00;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2981,333,0 chrV 137916 . G A 2985 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.5420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3018,324,0 chrV 138256 . G A 2696 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=19.97;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2729,294,0 chrV 138265 . C T 2517 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=18.37;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2550,276,0 chrV 138269 . T C 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.282;DP=139;Dels=0.00;FS=2.017;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=0.309;QD=17.10;ReadPosRankSum=3.219;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:4,135:139:99:2410,279,0 chrV 138369 . A G 3930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=175;Dels=0.00;FS=2.754;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.863;QD=22.46;ReadPosRankSum=2.379;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3930,444,0 chrV 138567 . G A 3765.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.68;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3765,411,0 chrV 138640 . G A 3849.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.64;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3849,417,0 chrV 138653 . T C 3440.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.23;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3440,390,0 chrV 138659 . A G 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.223;DP=156;Dels=0.00;FS=9.092;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.723;QD=19.90;ReadPosRankSum=3.403;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:4,152:156:99:3138,366,0 chrV 139176 . G T 5666.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=8.8678;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.61;SB=-3.127e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5666,615,0 chrV 139213 . G A 4814.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=17.8175;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.30;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,222:226:99:4814,546,0 chrV 139269 . A C 4427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=206;Dels=0.00;FS=3.017;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.387;QD=21.49;ReadPosRankSum=2.390;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4427,507,0 chrV 139492 . T G 5047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=207;Dels=0.00;FS=3.116;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.745;QD=24.38;ReadPosRankSum=1.699;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:5047,558,0 chrV 139659 . A G 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.400;QD=23.16;ReadPosRankSum=1.703;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2743,315,0 chrV 139852 . G A 1374 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.90;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1407,156,0 chrV 140109 . C T 1326 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.05;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1359,147,0 chrV 140298 . G A 1325 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.38;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1358,147,0 chrV 140379 . G T 1644 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=83.7336;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.68;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:1677,186,0 chrV 140430 . T A 1502 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=17.47;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1535,165,0 chrV 140686 . G C 3103 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=18.36;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,164:169:99:3136,366,0 chrV 140700 . C T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.38;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3342,357,0 chrV 140814 . G A 5102.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=16.5282;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.68;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5102,573,0 chrV 141117 . A G 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=114;Dels=0.00;FS=2.963;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-0.766;QD=20.01;ReadPosRankSum=2.407;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2314,261,0 chrV 141189 . G A 2746 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.88;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2779,303,0 chrV 141485 . G A 3130 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.7764;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.15;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3163,345,0 chrV 141527 . T C 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.01;FS=4.410;HaplotypeScore=17.2789;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.396;QD=21.18;ReadPosRankSum=1.705;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2765,318,0 chrV 141779 . T C 5179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.384;QD=24.20;ReadPosRankSum=2.381;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:5179,588,0 chrV 141826 . T C 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.015;QD=22.09;ReadPosRankSum=1.697;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4374,495,0 chrV 142188 . C T 3933.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.87;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3933,438,0 chrV 142227 . C T 3630.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.4814;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.87;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3630,399,0 chrV 142607 . C A 1880 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.2975;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.93;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1913,207,0 chrV 143292 . A G 3502.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=17.34;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:3502,402,0 chrV 143305 . A G 3142 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=16.54;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3175,369,0 chrV 143606 . T A 5584.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.15;SB=-2.920e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:5584,651,0 chrV 143676 . C T 5507.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=13.3130;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.43;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:5507,624,0 chrV 144159 . C T 3432.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3432,375,0 chrV 144265 . T C 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.8091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.653;QD=21.72;ReadPosRankSum=1.707;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3030,351,0 chrV 144303 . C G 3904.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.3185;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.57;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3904,432,0 chrV 144521 . A G 3850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.207;QD=23.33;ReadPosRankSum=1.711;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3850,429,0 chrV 145151 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3512,390,0 chrV 145413 . C G 2460 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2493,285,0 chrV 145503 . A G 2002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.335;QD=20.64;ReadPosRankSum=1.696;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2035,231,0 chrV 145541 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.51;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2689,294,0 chrV 145569 . C T 2356 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.61;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2389,267,0 chrV 145602 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.25;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1592,177,0 chrV 145635 . C T 1580 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1613,180,0 chrV 145745 . T G 2351 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2384,273,0 chrV 146273 . T C 4205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.361;QD=22.37;ReadPosRankSum=1.695;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4205,465,0 chrV 146717 . T C 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=3.843;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.463;QD=21.86;ReadPosRankSum=1.692;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3782,423,0 chrV 146845 . C G 3636.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.17;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3636,414,0 chrV 147605 . C T 2950 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2983,324,0 chrV 147672 . C T 2282 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.94;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2315,261,0 chrV 148485 . T C 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=4.713;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.702;QD=24.19;ReadPosRankSum=1.709;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3580,402,0 chrV 148773 . A G 4399.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4399,513,0 chrV 149990 . A C 2059 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=19.06;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2092,243,0 chrV 150005 . C T 2180 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.96;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2213,243,0 chrV 150086 . A G 2695 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.03;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2728,318,0 chrV 150304 . T C 3464.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.7415;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.94;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3464,393,0 chrV 150355 . A G 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=3.269;HaplotypeScore=9.4838;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.532;QD=22.49;ReadPosRankSum=1.703;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2754,318,0 chrV 150585 . A G 3411.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3411,381,0 chrV 151308 . A C 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=93;Dels=0.00;FS=3.774;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.726;QD=22.83;ReadPosRankSum=1.695;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2156,246,0 chrV 151441 . A G 2467 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.06;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2500,282,0 chrV 151454 . G A 2627 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=24.10;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2660,285,0 chrV 151518 . T G 1850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=91;Dels=0.00;FS=8.033;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.096;QD=20.33;ReadPosRankSum=2.395;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:2,88:91:99:1883,213,0 chrV 151653 . T A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.95;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3269,351,0 chrV 152027 . C T 149.06 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.63;SB=-2.794e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:21:182,21,0 chrV 152072 . A T 240 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=0;QD=12.63;SB=-1.518e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:30:273,30,0 chrV 152078 . G A 284 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=12.35;SB=-8.698e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:36:317,36,0 chrV 152115 . G A 343 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.16;MQ0=0;QD=7.46;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:39:376,39,0 chrV 152168 . C A 1182 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=15.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1215,132,0 chrV 152204 . A G 1458 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=17.78;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1491,165,0 chrV 152206 . G A 1480 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=17.01;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1513,165,0 chrV 152275 . T C 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-0.419;QD=21.30;ReadPosRankSum=1.676;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2674,300,0 chrV 152616 . G A 4353.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.9371;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=22.10;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4353,468,0 chrV 152630 . A T 3990.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.57;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3990,429,0 chrV 152800 . C T 2856 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.7406;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.85;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2889,321,0 chrV 152939 . A G 1396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=102;Dels=0.00;FS=7.033;HaplotypeScore=17.0958;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-0.013;QD=13.69;ReadPosRankSum=2.398;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:3,97:102:99:1429,171,0 chrV 153129 . A C 4640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=193;Dels=0.00;FS=8.557;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.004;QD=24.04;ReadPosRankSum=2.347;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4640,522,0 chrV 153241 . A G 3170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-0.106;QD=19.33;ReadPosRankSum=1.690;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3203,354,0 chrV 153249 . A T 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=164;Dels=0.00;FS=5.867;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.221;QD=19.23;ReadPosRankSum=2.933;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3186,345,0 chrV 153284 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.9552;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.871;QD=18.62;ReadPosRankSum=1.634;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3296,369,0 chrV 153551 . A G 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=130;Dels=0.00;FS=4.136;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-1.596;QD=21.29;ReadPosRankSum=1.650;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,126:130:99:2801,330,0 chrV 153804 . A G 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=189;Dels=0.00;FS=2.989;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=-0.656;QD=20.62;ReadPosRankSum=2.359;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:3898,441,0 chrV 153808 . A G 3909.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=21.02;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3909,444,0 chrV 153840 . G A 3063 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=17.40;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3096,333,0 chrV 153844 . G A 2948 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=17.04;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:2981,324,0 chrV 153951 . G A 3322.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.71;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3322,369,0 chrV 153952 . G C 3205.99 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.95;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3239,363,0 chrV 153989 . G T 3142 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.23;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3175,345,0 chrV 154345 . G C 2207 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.71;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2240,255,0 chrV 154354 . T C 2263 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.4443;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=19.34;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2296,258,0 chrV 154390 . C G 2485 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0273;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.26;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2518,282,0 chrV 154437 . C A 2587 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.10;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2620,288,0 chrV 154531 . T A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.04;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3365,375,0 chrV 154915 . A C 4301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.362;QD=23.50;ReadPosRankSum=1.713;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4301,480,0 chrV 155072 . A G 4146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=192;Dels=0.00;FS=9.518;HaplotypeScore=10.4671;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.120;QD=21.59;ReadPosRankSum=2.964;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:4146,483,0 chrV 155613 . A T 2615 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4514;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.74;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2648,288,0 chrV 155918 . G T 2479 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.7661;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=19.99;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2512,285,0 chrV 156713 . T A 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.866;QD=21.63;ReadPosRankSum=1.701;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2477,267,0 chrV 156762 . T C 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=130;Dels=0.00;FS=2.607;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.804;QD=21.53;ReadPosRankSum=2.355;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2832,321,0 chrV 156775 . A G 2879 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.0926;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.49;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2912,327,0 chrV 156904 . G C 4091.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.2185;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.85;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4091,462,0 chrV 157039 . A G 4983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=223;Dels=0.00;FS=11.620;HaplotypeScore=9.4905;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.176;QD=22.35;ReadPosRankSum=2.933;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:3,220:223:99:4983,576,0 chrV 157149 . G A 5059.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.8427;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.38;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5059,561,0 chrV 157238 . G A 4396.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.63;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4396,480,0 chrV 157328 . A T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.89;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3260,360,0 chrV 157488 . C T 1356 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.19;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1389,156,0 chrV 157503 . A G 1128 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.51;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1161,135,0 chrV 157537 . A T 910 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.96;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:943,102,0 chrV 158386 . T C 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=159;Dels=0.00;FS=3.017;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.869;QD=21.71;ReadPosRankSum=2.387;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3452,405,0 chrV 158484 . T A 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.488;QD=24.54;ReadPosRankSum=1.710;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3829,417,0 chrV 158705 . A G 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=196;Dels=0.00;FS=9.303;HaplotypeScore=14.1377;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.634;QD=21.03;ReadPosRankSum=1.150;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:3,192:196:99:4122,452,0 chrV 159092 . A G 2411 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=20.61;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2444,285,0 chrV 159381 . T C 5697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.978;QD=22.88;ReadPosRankSum=1.662;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,247:249:99:5697,645,0 chrV 159422 . T C 6984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.168;DP=317;Dels=0.00;FS=5.190;HaplotypeScore=13.4140;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.496;QD=22.03;ReadPosRankSum=3.400;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:4,311:317:99:6984,792,0 chrV 159475 . C A 7515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=8.5479;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.120;QD=22.37;ReadPosRankSum=1.597;SB=-4.165e+03 GT:AD:DP:GQ:PL 1/1:1,333:336:99:7515,852,0 chrV 159556 . T C 6074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=283;Dels=0.00;FS=4.018;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.668;QD=21.46;ReadPosRankSum=1.720;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:1,279:283:99:6074,687,0 chrV 159624 . G A 6736.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=20.2433;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.99;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:6736,730,0 chrV 159810 . G A 5278.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.95;SB=-2.959e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5278,576,0 chrV 159875 . A G 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.456;DP=188;Dels=0.00;FS=3.657;HaplotypeScore=20.4454;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.622;QD=20.78;ReadPosRankSum=1.714;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3907,459,0 chrV 160010 . T C 4508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=207;Dels=0.00;FS=9.356;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-1.133;QD=21.78;ReadPosRankSum=2.916;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:3,201:207:99:4508,504,0 chrV 160020 . G A 4126.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.83;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4126,459,0 chrV 160038 . T A 3832.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=20.60;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3832,432,0 chrV 160192 . A C 4806.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=21.4342;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.95;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4806,540,0 chrV 160239 . T G 3896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=3.245;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.760;QD=22.14;ReadPosRankSum=1.671;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:1,170:175:99:3896,438,0 chrV 160326 . A G 2909 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.9350;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.41;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2942,333,0 chrV 160481 . G A 4149.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.41;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4149,471,0 chrV 160729 . T C 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.187;DP=187;Dels=0.00;FS=14.627;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.948;QD=21.95;ReadPosRankSum=3.413;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:4,182:187:99:4104,471,0 chrV 160908 . C T 2344 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=16.05;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2377,258,0 chrV 160912 . T C 2186 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=15.39;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2219,252,0 chrV 161191 . G A 4334.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.2727;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.30;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4334,486,0 chrV 161419 . C T 3636.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.02;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3636,399,0 chrV 161422 . G A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.76;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3529,390,0 chrV 161767 . T A 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.2550;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.092;QD=22.46;ReadPosRankSum=1.703;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2706,306,0 chrV 161851 . C T 3476.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.33;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3476,387,0 chrV 161860 . A G 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=4.050;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-1.106;QD=20.31;ReadPosRankSum=1.665;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3181,354,0 chrV 161933 . A G 3015 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=16.0478;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.79;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,141:145:99:3048,360,0 chrV 162008 . T C 4085.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=175;Dels=0.00;FS=5.985;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.405;QD=23.34;ReadPosRankSum=2.902;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:4085,450,0 chrV 162250 . T C 4692.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.7558;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=22.45;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4692,543,0 chrV 162334 . A G 2483 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=12.05;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:2516,282,0 chrV 162458 . T C 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=177;Dels=0.00;FS=11.121;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.723;QD=19.87;ReadPosRankSum=2.407;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:2,173:177:99:3517,411,0 chrV 162474 . G A 3934.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.38;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3934,432,0 chrV 163269 . T C 4272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=192;Dels=0.00;FS=3.597;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.802;QD=22.25;ReadPosRankSum=1.696;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:4272,477,0 chrV 163290 . A G 4313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.413;DP=186;Dels=0.00;FS=8.872;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.023;QD=23.19;ReadPosRankSum=3.413;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:4,182:186:99:4313,480,0 chrV 164801 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.4541;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3145,351,0 chrV 165100 . A T 3419.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3419,372,0 chrV 165294 . G A 2855 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.30;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2888,327,0 chrV 165547 . T G 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=170;Dels=0.00;FS=2.835;HaplotypeScore=8.1023;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.955;QD=23.06;ReadPosRankSum=2.376;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:2,164:170:99:3920,453,0 chrV 165567 . G A 4097.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.24;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4097,441,0 chrV 165705 . C T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.22;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3755,426,0 chrV 165924 . G A 3317.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.86;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3317,369,0 chrV 166080 . G T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.88;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3295,357,0 chrV 166204 . T G 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.0934;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.172;QD=22.05;ReadPosRankSum=1.712;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3792,426,0 chrV 166918 . T C 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=152;Dels=0.00;FS=9.836;HaplotypeScore=12.8429;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.554;QD=22.21;ReadPosRankSum=2.368;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3376,375,0 chrV 167641 . A C 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.086;QD=23.27;ReadPosRankSum=1.647;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3770,426,0 chrV 168779 . C T 3327.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=23.43;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3327,366,0 chrV 168930 . G A 2600 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.4220;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.00;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2633,291,0 chrV 168990 . A G 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=141;Dels=0.00;FS=5.878;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.607;QD=19.62;ReadPosRankSum=2.936;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:2799,327,0 chrV 169005 . A G 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=145;Dels=0.00;FS=5.932;HaplotypeScore=5.1308;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.924;QD=19.46;ReadPosRankSum=2.924;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:2854,330,0 chrV 169109 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=9.6362;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3262,360,0 chrV 169164 . G A 2769 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.07;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2802,309,0 chrV 169431 . C T 2022 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.98;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2055,222,0 chrV 169452 . G A 1633 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=19.21;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1666,189,0 chrV 169464 . T C 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=3.233;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.563;QD=17.31;ReadPosRankSum=1.689;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1418,162,0 chrV 169611 . A G 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.00;FS=4.028;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.259;QD=22.23;ReadPosRankSum=1.706;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3034,357,0 chrV 169674 . T C 2757 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.97;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2790,312,0 chrV 169761 . A G 3053 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0027;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.96;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3086,348,0 chrV 171017 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=176;Dels=0.00;FS=5.465;HaplotypeScore=13.7883;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.472;QD=19.49;ReadPosRankSum=1.712;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3431,390,0 chrV 171549 . A G 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=153;Dels=0.00;FS=5.006;HaplotypeScore=8.8075;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.664;QD=22.64;ReadPosRankSum=1.709;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3464,399,0 chrV 171591 . A G 3318.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.37;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3318,372,0 chrV 171972 . G A 3631.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.87;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3631,390,0 chrV 173217 . T G 3408.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3408,387,0 chrV 173402 . C T 3624.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.08;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3624,396,0 chrV 173562 . C T 3103 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.43;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3136,342,0 chrV 173645 . C T 3007 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=19.40;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3040,336,0 chrV 173765 . C T 2121 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.39;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2154,237,0 chrV 173841 . C T 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=0.093;QD=21.67;ReadPosRankSum=1.516;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2460,267,0 chrV 173853 . T C 2444 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7440;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=21.63;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2477,279,0 chrV 173889 . G A 2082 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=17.07;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2115,237,0 chrV 173893 . C A 2147 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=16.91;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2180,240,0 chrV 173989 . A G 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.6221;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.391;QD=23.51;ReadPosRankSum=2.392;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:3089,354,0 chrV 174075 . T A 3406.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=23.82;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3406,384,0 chrV 174633 . G A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.5088;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.48;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3645,417,0 chrV 174650 . C T 3904.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.9032;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.57;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3904,420,0 chrV 174700 . C A 3649.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=20.3049;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=19.62;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:3649,405,0 chrV 174777 . G C 3547.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.4916;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.50;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,160:165:99:3547,408,0 chrV 174794 . A G 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=3.570;HaplotypeScore=11.5574;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=0.457;QD=20.70;ReadPosRankSum=1.675;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:3808,438,0 chrV 175003 . T C 4055.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.3651;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.07;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4055,453,0 chrV 175045 . T G 3706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=194;Dels=0.01;FS=4.569;HaplotypeScore=12.1621;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-1.237;QD=19.10;ReadPosRankSum=1.714;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,188:193:99:3706,423,0 chrV 175154 . A G 4573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=199;Dels=0.01;FS=5.770;HaplotypeScore=31.3665;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=-0.750;QD=22.98;ReadPosRankSum=2.352;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:3,194:197:99:4573,510,0 chrV 175314 . C G 5006.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=22.86;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5006,582,0 chrV 175352 . A G 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;MQRankSum=-0.661;QD=21.05;ReadPosRankSum=1.618;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3233,375,0 chrV 175361 . G A 2682 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.78;MQ0=0;QD=20.32;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2715,303,0 chrV 175373 . T G 1969 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.27;MQ0=0;QD=17.90;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2002,231,0 chrV 175376 . C T 1778 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.10;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1811,198,0 chrV 175379 . A G 1524 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;MQRankSum=1.295;QD=16.04;ReadPosRankSum=1.696;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1557,177,0 chrV 175383 . T C 1295 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.70;MQ0=0;QD=15.99;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1328,156,0 chrV 175384 . C A 1365 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.25;MQ0=0;QD=16.65;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1398,153,0 chrV 175385 . T A 1361 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=14.293;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.24;MQ0=0;MQRankSum=0.014;QD=15.83;ReadPosRankSum=2.335;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1394,156,0 chrV 175389 . T C 1473 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.142;DP=112;Dels=0.00;FS=11.850;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=32.73;MQ0=0;MQRankSum=-0.736;QD=13.15;ReadPosRankSum=2.362;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1506,165,0 chrV 175491 . G A 5045.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=19.40;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5045,564,0 chrV 175496 . T C 4443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=253;Dels=0.00;FS=4.329;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=0.605;QD=17.56;ReadPosRankSum=1.718;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,251:253:99:4443,527,0 chrV 175565 . G A 1224 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;QD=11.23;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1257,147,0 chrV 175575 . A G 1105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=103;Dels=0.00;FS=8.506;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.72;MQ0=0;MQRankSum=-1.542;QD=10.73;ReadPosRankSum=2.330;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1138,132,0 chrV 175587 . T A 932 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.50;MQ0=0;QD=12.26;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:965,117,0 chrV 175593 . T A 772 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.28;MQ0=0;QD=12.45;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:805,99,0 chrV 175595 . T C 760 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.28;MQ0=0;QD=12.26;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:793,99,0 chrV 175646 . A T 626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=88;Dels=0.00;FS=8.875;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=32.56;MQ0=0;MQRankSum=1.666;QD=7.11;ReadPosRankSum=2.394;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:75:659,75,0 chrV 175655 . C T 590 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.82;MQ0=0;QD=6.63;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:72:623,72,0 chrV 175674 . T C 872 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=2;QD=8.47;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:905,102,0 chrV 175700 . T C 859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.951;DP=149;Dels=0.00;FS=1.074;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=3;MQRankSum=-3.785;QD=5.77;ReadPosRankSum=5.666;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:14,135:149:34:892,34,0 chrV 175736 . T C 2674 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.344;DP=223;Dels=0.00;FS=38.915;HaplotypeScore=19.9567;MLEAC=2;MLEAF=1.00;MQ=44.89;MQ0=6;MQRankSum=3.227;QD=11.99;ReadPosRankSum=-4.552;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:10,211:223:99:2707,309,0 chrV 175772 . T C 674.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.784;DP=204;Dels=0.00;FS=3.396;HaplotypeScore=14.9480;MLEAC=1;MLEAF=0.500;MQ=45.85;MQ0=3;MQRankSum=2.688;QD=3.30;ReadPosRankSum=1.860;SB=-4.630e+02 GT:AD:DP:GQ:PL 0/1:117,86:204:99:704,0,1521 chrV 175781 . C T 1482.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.425;DP=189;Dels=0.00;FS=25.993;HaplotypeScore=7.6981;MLEAC=1;MLEAF=0.500;MQ=47.91;MQ0=4;MQRankSum=-0.001;QD=7.84;ReadPosRankSum=2.180;SB=-2.320e+02 GT:AD:DP:GQ:PL 0/1:91,98:189:99:1512,0,836 chrV 175826 . C T 577.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.637;DP=95;Dels=0.00;FS=7.897;HaplotypeScore=8.1811;MLEAC=1;MLEAF=0.500;MQ=41.13;MQ0=0;MQRankSum=-4.623;QD=6.07;ReadPosRankSum=4.943;SB=-4.990e+02 GT:AD:DP:GQ:PL 0/1:30,63:95:99:607,0,434 chrV 175827 . A T 588.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.774;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.6037;MLEAC=1;MLEAF=0.500;MQ=41.01;MQ0=0;MQRankSum=-4.758;QD=6.61;ReadPosRankSum=6.827;SB=-4.930e+02 GT:AD:DP:GQ:PL 0/1:32,57:89:99:618,0,359 chrV 175831 . A G 61.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;DP=90;Dels=0.00;FS=10.960;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=36.91;MQ0=0;MQRankSum=3.000;QD=0.68;ReadPosRankSum=-4.608;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,17:90:91:91,0,692 chrV 175832 . A T 38.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.075;DP=85;Dels=0.00;FS=10.359;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=34.52;MQ0=0;MQRankSum=3.070;QD=0.45;ReadPosRankSum=-3.319;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,11:85:68:68,0,703 chrV 175839 . A T 765 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.064;DP=87;Dels=0.00;FS=3.995;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=0;MQRankSum=0.119;QD=8.79;ReadPosRankSum=3.547;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:5,82:87:71:798,71,0 chrV 175840 . T C 753 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;QD=9.07;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:96:786,96,0 chrV 175841 . A T 794 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=9.13;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:827,99,0 chrV 175842 . A T 802 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=0;QD=9.11;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:96:835,96,0 chrV 176447 . A G 4147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=178;Dels=0.00;FS=3.008;HaplotypeScore=10.2303;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.173;QD=23.30;ReadPosRankSum=2.394;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4147,471,0 chrV 177073 . G A 2340 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=19.83;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2373,255,0 chrV 177079 . G A 2330 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.26;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2363,261,0 chrV 177351 . C T 3159 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.89;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3192,345,0 chrV 177453 . T A 3816.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=23.27;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3816,429,0 chrV 177489 . T C 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.0479;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.931;QD=22.77;ReadPosRankSum=1.652;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3939,438,0 chrV 177849 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.99;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3298,372,0 chrV 178044 . A G 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.0159;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.314;QD=18.17;ReadPosRankSum=1.712;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3231,360,0 chrV 178086 . T C 4275.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.75;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4275,486,0 chrV 178287 . T C 3883.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.84;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3883,444,0 chrV 178671 . T A 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.030;DP=135;Dels=0.00;FS=8.718;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.318;QD=19.80;ReadPosRankSum=3.315;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:4,131:135:99:2706,312,0 chrV 178691 . G A 3024 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=21.60;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3057,345,0 chrV 178728 . T A 2659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=0.231;QD=17.73;ReadPosRankSum=1.709;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2692,294,0 chrV 178729 . A C 2588 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=16.81;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2621,297,0 chrV 178786 . T C 3682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=190;Dels=0.00;FS=6.613;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=0.860;QD=19.38;ReadPosRankSum=2.398;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3682,414,0 chrV 178894 . T G 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=176;Dels=0.00;FS=3.370;HaplotypeScore=10.4546;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=1.653;QD=23.23;ReadPosRankSum=1.712;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4088,471,0 chrV 179014 . A G 3319.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=20.36;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3319,384,0 chrV 179020 . A G 3174 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=19.35;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3207,366,0 chrV 179042 . G A 2816 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=18.05;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2849,303,0 chrV 179058 . A C 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=166;Dels=0.00;FS=3.254;HaplotypeScore=9.6130;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;MQRankSum=0.451;QD=15.82;ReadPosRankSum=1.711;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:2659,306,0 chrV 179137 . C T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.35;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3458,378,0 chrV 179143 . G T 3414.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=19.85;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3414,381,0 chrV 179334 . T C 4474.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.93;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4474,507,0 chrV 179359 . C T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.87;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3796,426,0 chrV 179485 . A G 3271.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=19.95;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3271,372,0 chrV 179488 . C A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.07;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3414,366,0 chrV 179545 . A G 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.616;QD=21.05;ReadPosRankSum=1.686;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3170,357,0 chrV 179605 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.6997;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.88;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4060,465,0 chrV 179647 . T C 3681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=162;Dels=0.00;FS=5.838;HaplotypeScore=16.3870;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.006;QD=22.72;ReadPosRankSum=2.956;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:3681,423,0 chrV 179788 . G A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.36;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3846,432,0 chrV 179823 . C A 3927.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.3504;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.57;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3927,426,0 chrV 180139 . T C 3738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=157;Dels=0.00;FS=5.350;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.686;QD=23.81;ReadPosRankSum=2.891;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3738,420,0 chrV 180216 . A G 4497.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.6731;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.92;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4497,504,0 chrV 180460 . C T 6114.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=11.4270;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.23;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:6114,672,0 chrV 181108 . C T 3045 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.42;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3078,345,0 chrV 181135 . T C 2576 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.60;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2609,297,0 chrV 181486 . G A 3776.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.9114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3776,426,0 chrV 181705 . T C 4137.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.98;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4137,459,0 chrV 182014 . A G 4044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=3.334;HaplotypeScore=11.5540;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.560;QD=22.22;ReadPosRankSum=1.675;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4044,474,0 chrV 182044 . G C 4915.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=15.0082;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.86;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4915,567,0 chrV 182242 . G A 4536.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.26;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4536,489,0 chrV 182338 . T C 2074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.366;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=-1.632;QD=19.75;ReadPosRankSum=1.399;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2107,243,0 chrV 182340 . A T 2222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=107;Dels=0.00;FS=6.144;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.886;QD=20.77;ReadPosRankSum=2.243;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2255,246,0 chrV 182381 . A T 2426 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.47;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2459,270,0 chrV 182404 . T C 2577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.169;QD=19.38;ReadPosRankSum=1.706;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2610,303,0 chrV 182701 . A G 3840.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3840,426,0 chrV 182839 . G A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3616,399,0 chrV 183270 . G A 3125 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.40;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3158,342,0 chrV 183277 . A T 2849 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.06;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2882,330,0 chrV 183424 . A G 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=161;Dels=0.00;FS=3.291;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.039;QD=21.14;ReadPosRankSum=1.710;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3403,393,0 chrV 183549 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.57;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3498,387,0 chrV 183617 . A G 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=142;Dels=0.00;FS=5.649;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.693;QD=22.26;ReadPosRankSum=2.950;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:3,138:142:99:3194,369,0 chrV 183864 . T C 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=0.796;QD=17.72;ReadPosRankSum=2.371;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:2833,312,0 chrV 183869 . A G 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=4.719;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=-1.210;QD=15.97;ReadPosRankSum=1.711;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:2700,315,0 chrV 183910 . C G 3149 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.5156;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=17.21;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3182,363,0 chrV 183957 . A G 4432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=195;Dels=0.00;FS=3.924;HaplotypeScore=10.3329;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.222;QD=22.73;ReadPosRankSum=1.714;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4432,504,0 chrV 184027 . A G 4880.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.13;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4880,549,0 chrV 184268 . T C 4660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=219;Dels=0.00;FS=4.554;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=1.554;QD=21.28;ReadPosRankSum=1.635;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,213:219:99:4660,549,0 chrV 184291 . A C 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.524;DP=186;Dels=0.00;FS=10.797;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.528;QD=21.82;ReadPosRankSum=3.780;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:5,179:186:99:4059,456,0 chrV 184684 . T C 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=3.047;HaplotypeScore=10.9376;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.523;QD=23.24;ReadPosRankSum=2.388;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2845,318,0 chrV 185755 . C T 2943 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2976,324,0 chrV 185983 . T C 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=114;Dels=0.00;FS=6.379;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.593;QD=21.61;ReadPosRankSum=2.340;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:2,110:114:99:2497,288,0 chrV 186279 . G C 3901.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3901,438,0 chrV 186424 . A G 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-1.563;QD=20.47;ReadPosRankSum=1.684;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2980,342,0 chrV 186591 . C T 2499 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=21.18;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2532,273,0 chrV 186610 . C T 2275 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5577;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=17.50;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2308,255,0 chrV 186622 . T C 2172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=136;Dels=0.00;FS=5.978;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;MQRankSum=-0.785;QD=15.97;ReadPosRankSum=2.919;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2205,252,0 chrV 186649 . A G 2446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=158;Dels=0.00;FS=3.791;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.504;QD=15.48;ReadPosRankSum=1.688;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2479,288,0 chrV 186791 . T G 2965 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=22.81;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2998,342,0 chrV 186812 . A G 3040 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=23.21;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3073,351,0 chrV 187027 . T C 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=144;Dels=0.00;FS=2.573;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-1.716;QD=21.54;ReadPosRankSum=2.936;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:3,139:144:99:3135,363,0 chrV 187071 . G T 4199.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.56;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4199,450,0 chrV 187124 . T C 5537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.968;DP=222;Dels=0.00;FS=2.448;HaplotypeScore=10.3322;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.213;QD=24.94;ReadPosRankSum=2.914;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:3,219:222:99:5537,612,0 chrV 187156 . C T 5339.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.0257;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.16;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5339,597,0 chrV 187246 . G A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.61;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3609,405,0 chrV 187268 . C T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.43;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3791,411,0 chrV 187309 . A C 4451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.345;DP=215;Dels=0.00;FS=2.383;HaplotypeScore=17.1407;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.202;QD=20.70;ReadPosRankSum=3.394;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:4,209:215:99:4451,492,0 chrV 187357 . G A 5169.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.67;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5169,564,0 chrV 187466 . G A 2207 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=20.82;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2240,252,0 chrV 187482 . T A 2071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=0.553;QD=22.03;ReadPosRankSum=1.622;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2104,228,0 chrV 187519 . T C 1919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=102;Dels=0.00;FS=3.854;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;MQRankSum=0.577;QD=18.81;ReadPosRankSum=1.562;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1952,228,0 chrV 187559 . C T 2516 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=21.88;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2549,294,0 chrV 187567 . G C 2244 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=21.17;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2277,258,0 chrV 187598 . T C 2240 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;QD=21.54;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2273,264,0 chrV 187631 . A G 1571 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.20;MQ0=0;QD=17.65;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1604,189,0 chrV 187642 . T C 1519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=4.030;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.44;MQ0=0;MQRankSum=-0.121;QD=17.26;ReadPosRankSum=1.692;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,85:88:99:1552,180,0 chrV 187648 . G A 1580 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=0;QD=17.95;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1613,183,0 chrV 187679 . C T 1711 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=18.20;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1744,192,0 chrV 187705 . A G 1780 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;QD=18.74;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1813,204,0 chrV 187751 . A T 1812 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.11;MQ0=0;QD=21.07;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1845,198,0 chrV 187774 . T A 1435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=82;Dels=0.00;FS=10.211;HaplotypeScore=62.1632;MLEAC=2;MLEAF=1.00;MQ=32.71;MQ0=0;MQRankSum=-2.470;QD=17.50;ReadPosRankSum=2.791;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1468,171,0 chrV 187805 . C T 1027 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.01;MQ0=0;QD=13.51;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1060,126,0 chrV 187817 . T A 924 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.58;MQ0=0;QD=12.32;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:957,117,0 chrV 187824 . C G 933 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.97;MQ0=0;QD=11.24;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:966,120,0 chrV 187838 . A G 1222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.751;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;MQRankSum=0.340;QD=11.98;ReadPosRankSum=1.698;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1255,147,0 chrV 187885 . T C 1796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=143;Dels=0.00;FS=5.298;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.42;MQ0=0;MQRankSum=0.514;QD=12.56;ReadPosRankSum=2.951;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:1829,210,0 chrV 187939 . A G 1434 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=33.65;MQ0=0;QD=10.86;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:1467,168,0 chrV 188016 . T C 2134 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=18.24;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2167,249,0 chrV 188018 . T C 2252 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=18.77;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2285,258,0 chrV 188040 . G A 2142 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;QD=15.30;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2175,252,0 chrV 188051 . C T 2472 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=15.55;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2505,282,0 chrV 188435 . A G 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=134;Dels=0.00;FS=2.833;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.192;QD=22.31;ReadPosRankSum=2.412;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:2,129:134:99:3022,345,0 chrV 188732 . T C 4257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=187;Dels=0.00;FS=6.527;HaplotypeScore=10.1615;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=0.482;QD=22.76;ReadPosRankSum=2.344;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:4257,489,0 chrV 188774 . G A 4575.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.99;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4575,498,0 chrV 188775 . C T 4708.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=21.40;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4708,504,0 chrV 188873 . G A 3634.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.01;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3634,402,0 chrV 189662 . A G 3823.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.89;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3823,453,0 chrV 190070 . A G 5548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=18.1762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.326;QD=21.50;ReadPosRankSum=1.678;SB=-2.946e+03 GT:AD:DP:GQ:PL 1/1:1,256:258:99:5548,624,0 chrV 190355 . C T 4866.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.02;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4866,549,0 chrV 191683 . G A 4360.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.83;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4360,480,0 chrV 192057 . G A 7471.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=21.7275;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,307:308:99:7471,808,0 chrV 192719 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.7242;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.95;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:3611,399,0 chrV 194625 . T A 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=158;Dels=0.00;FS=11.291;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.446;QD=22.13;ReadPosRankSum=2.917;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3496,378,0 chrV 194646 . T G 3152 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=19.70;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3185,357,0 chrV 194680 . A C 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.5996;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=0.674;QD=17.15;ReadPosRankSum=1.670;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:2897,336,0 chrV 194686 . A G 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=165;Dels=0.00;FS=5.867;HaplotypeScore=13.3850;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-1.288;QD=16.88;ReadPosRankSum=2.957;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:2818,324,0 chrV 195746 . A G 5315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=249;Dels=0.00;FS=3.002;HaplotypeScore=8.5063;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.432;QD=21.35;ReadPosRankSum=2.390;SB=-2.963e+03 GT:AD:DP:GQ:PL 1/1:2,245:249:99:5315,600,0 chrV 195765 . A G 4958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.167;DP=256;Dels=0.00;FS=12.493;HaplotypeScore=20.1748;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.516;QD=19.37;ReadPosRankSum=3.379;SB=-2.938e+03 GT:AD:DP:GQ:PL 1/1:4,251:256:99:4958,582,0 chrV 195830 . T G 5235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=17.1683;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-0.106;QD=19.39;ReadPosRankSum=1.924;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:2,264:270:99:5235,620,0 chrV 195872 . G C 4659.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=19.09;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:4659,513,0 chrV 195875 . T C 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=247;Dels=0.00;FS=3.781;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=0.803;QD=17.81;ReadPosRankSum=1.690;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:1,245:247:99:4400,501,0 chrV 195975 . T C 4676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=255;Dels=0.00;FS=3.096;HaplotypeScore=6.3842;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=-0.156;QD=18.34;ReadPosRankSum=1.718;SB=-3.195e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:4676,525,0 chrV 195985 . G T 4644.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=8.0730;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=17.93;SB=-3.064e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:4644,519,0 chrV 196106 . T C 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=17.7956;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=1.101;QD=21.67;ReadPosRankSum=1.715;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4400,513,0 chrV 196190 . A G 4369.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=19.86;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4369,498,0 chrV 196196 . G A 4282.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=19.46;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:4282,492,0 chrV 196271 . C T 4358.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=22.0171;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.06;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4358,468,0 chrV 196352 . T C 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=175;Dels=0.00;FS=8.072;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;MQRankSum=-0.812;QD=15.70;ReadPosRankSum=2.379;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:2780,333,0 chrV 196355 . T C 2822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=4.091;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;MQRankSum=-1.693;QD=15.85;ReadPosRankSum=1.713;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:2855,330,0 chrV 196385 . A G 2449 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=15.50;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2482,288,0 chrV 196391 . G A 2246 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.60;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2279,255,0 chrV 196478 . T C 2408 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=19.58;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2441,279,0 chrV 196526 . C T 3154 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=21.75;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3187,339,0 chrV 196529 . A T 2860 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=20.58;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2893,330,0 chrV 196554 . T C 2523 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=20.18;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2556,291,0 chrV 196708 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.64;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2229,252,0 chrV 196832 . C T 2729 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.93;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2762,306,0 chrV 196983 . T C 2636 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.61;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2669,300,0 chrV 196986 . C T 2628 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=21.37;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2661,294,0 chrV 197103 . T C 3933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=161;Dels=0.00;FS=3.036;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.114;QD=24.43;ReadPosRankSum=2.404;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3933,450,0 chrV 197145 . G A 3502.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.50;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3502,381,0 chrV 197322 . A G 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.452;QD=22.01;ReadPosRankSum=1.707;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:3115,348,0 chrV 197352 . T C 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=152;Dels=0.00;FS=3.245;HaplotypeScore=9.4518;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.752;QD=22.82;ReadPosRankSum=1.709;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3469,390,0 chrV 197415 . A G 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=160;Dels=0.00;FS=3.010;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.407;QD=23.46;ReadPosRankSum=1.710;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3754,438,0 chrV 197493 . G A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3520,378,0 chrV 197724 . T C 2755 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2788,315,0 chrV 197916 . C A 3116 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.26;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3149,354,0 chrV 198126 . G A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3467,375,0 chrV 198431 . A C 2069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.098;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.143;QD=20.90;ReadPosRankSum=2.400;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2102,237,0 chrV 198538 . T C 1826 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.54;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1859,213,0 chrV 198667 . G T 1755 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=25.43;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1788,195,0 chrV 198865 . A G 2469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.315;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.028;QD=20.92;ReadPosRankSum=1.703;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2502,282,0 chrV 198880 . G A 2579 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=19.99;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2612,285,0 chrV 199099 . C T 3814.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.1426;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.98;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3814,429,0 chrV 199206 . G C 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=0.011;QD=23.48;ReadPosRankSum=0.527;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3781,404,0 chrV 199231 . C T 4204.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.48;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4204,465,0 chrV 199252 . T C 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=187;Dels=0.00;FS=2.719;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=-1.767;QD=18.99;ReadPosRankSum=2.397;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3551,411,0 chrV 199270 . A G 3413.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=18.45;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,181:185:99:3413,390,0 chrV 199328 . T C 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=183;Dels=0.00;FS=2.959;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.924;QD=19.62;ReadPosRankSum=2.396;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:3591,399,0 chrV 199354 . G A 4746.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.39;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4746,519,0 chrV 199589 . C T 4084.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.02;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4084,441,0 chrV 200053 . T C 3811.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.1249;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.82;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3811,432,0 chrV 200245 . G A 4056.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.6882;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.86;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4056,453,0 chrV 200350 . C T 4229.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.63;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4229,468,0 chrV 200800 . A G 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=183;Dels=0.00;FS=8.139;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.584;QD=22.68;ReadPosRankSum=2.396;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4150,489,0 chrV 200851 . G A 5447.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.82;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:5447,588,0 chrV 202232 . G A 3829.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3319;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3829,414,0 chrV 202834 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.26;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3303,360,0 chrV 203211 . A G 3742.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=20.67;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3742,420,0 chrV 203226 . T C 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=0.711;QD=17.38;ReadPosRankSum=1.696;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3303,384,0 chrV 203238 . C T 3405.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=18.21;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3405,378,0 chrV 203277 . T C 3512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=196;Dels=0.00;FS=3.838;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-1.220;QD=17.92;ReadPosRankSum=1.679;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:3512,405,0 chrV 203403 . G A 4868.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.3064;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.52;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4868,525,0 chrV 203996 . A G 4246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=198;Dels=0.00;FS=3.025;HaplotypeScore=16.5180;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.034;QD=21.44;ReadPosRankSum=2.399;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:4246,477,0 chrV 204069 . T C 4209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.505;QD=24.05;ReadPosRankSum=1.692;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4209,474,0 chrV 204096 . A G 4133.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.19;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4133,465,0 chrV 205086 . T G 4966.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.4127;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.11;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4966,552,0 chrV 205373 . T C 5216.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=17.3435;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.92;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5216,603,0 chrV 206276 . T C 3444.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.2100;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=19.68;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3444,393,0 chrV 206288 . T C 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=174;Dels=0.00;FS=7.113;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.278;QD=19.17;ReadPosRankSum=2.421;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3335,381,0 chrV 206411 . G A 4451.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=19.0826;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.71;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4451,501,0 chrV 206666 . G T 3924.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.9774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.65;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3924,438,0 chrV 206836 . G C 3698.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.83;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3698,420,0 chrV 207285 . A C 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.093;QD=21.55;ReadPosRankSum=1.705;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2835,318,0 chrV 207755 . T C 2148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.263;QD=22.37;ReadPosRankSum=1.588;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2181,249,0 chrV 209273 . G A 5515.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=14.3423;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5515,612,0 chrV 210066 . G A 5467.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=18.2515;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.67;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5467,591,0 chrV 210347 . A G 3501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=169;Dels=0.00;FS=2.962;HaplotypeScore=16.8543;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.285;QD=20.72;ReadPosRankSum=2.406;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3501,390,0 chrV 211770 . C A 2835 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=18.90;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2868,321,0 chrV 212069 . G T 2680 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.71;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2713,300,0 chrV 212585 . C A 2669 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.06;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2702,294,0 chrV 212901 . A G 4026.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.7206;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4026,456,0 chrV 213180 . G C 2320 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2353,264,0 chrV 213556 . T C 4595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=200;Dels=0.00;FS=2.907;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.823;QD=22.98;ReadPosRankSum=2.400;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4595,519,0 chrV 213832 . T C 4195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.031;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.0752;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=2.313;QD=21.08;ReadPosRankSum=2.375;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4195,495,0 chrV 213949 . C T 3889.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3889,429,0 chrV 214752 . G T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.73;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3520,393,0 chrV 214893 . C T 4381.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.8557;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.07;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4381,477,0 chrV 214935 . C T 5146.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=16.3800;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.74;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5146,555,0 chrV 215059 . G C 4325.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.6880;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.51;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4325,492,0 chrV 215084 . G A 4731.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.02;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4731,522,0 chrV 215137 . T C 4393.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.5592;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.41;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4393,492,0 chrV 215203 . G A 3286.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=18.89;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3286,357,0 chrV 215227 . A G 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.716;DP=169;Dels=0.00;FS=10.972;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-0.645;QD=18.18;ReadPosRankSum=3.753;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:5,164:169:99:3105,348,0 chrV 215441 . A G 4414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=195;Dels=0.00;FS=3.433;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.089;QD=22.64;ReadPosRankSum=1.679;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4414,504,0 chrV 215513 . G A 4329.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.60;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4329,486,0 chrV 216589 . C G 3819.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.82;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3819,444,0 chrV 216618 . G C 3425.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.76;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3425,396,0 chrV 216640 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.8818;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.20;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3414,369,0 chrV 216696 . C T 3886.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.01;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3886,417,0 chrV 216724 . C T 3697.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.09;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3697,399,0 chrV 216733 . C T 3763.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.23;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3763,408,0 chrV 217039 . T C 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.5696;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.818;QD=21.71;ReadPosRankSum=1.708;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3181,366,0 chrV 217204 . T C 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.439;QD=21.08;ReadPosRankSum=1.705;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2774,321,0 chrV 217279 . T G 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.451;QD=22.72;ReadPosRankSum=1.710;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3635,411,0 chrV 217294 . T A 3636.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.16;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3636,390,0 chrV 217418 . G A 3109 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.21;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3142,342,0 chrV 217471 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.37;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3142,354,0 chrV 217536 . A G 2496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.667;DP=112;Dels=0.00;FS=5.872;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.108;QD=22.29;ReadPosRankSum=2.847;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2529,285,0 chrV 217777 . T C 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=92;Dels=0.00;FS=7.230;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.564;QD=17.36;ReadPosRankSum=2.367;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:2,87:92:99:1630,192,0 chrV 218012 . G A 3585.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.59;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3585,387,0 chrV 218253 . A C 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=163;Dels=0.00;FS=3.797;HaplotypeScore=9.4417;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.711;QD=21.66;ReadPosRankSum=0.648;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3530,414,0 chrV 218489 . C G 3052 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.12;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3085,345,0 chrV 219028 . G A 3152 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=21.01;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3185,354,0 chrV 219029 . G A 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=4.023;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=0.337;QD=21.17;ReadPosRankSum=1.709;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3188,330,0 chrV 219147 . G A 2963 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.43;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2996,333,0 chrV 219160 . C A 2786 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.04;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2819,306,0 chrV 219230 . T C 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=136;Dels=0.00;FS=3.075;HaplotypeScore=8.7495;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=0.535;QD=21.96;ReadPosRankSum=1.707;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3019,348,0 chrV 219256 . C T 2854 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=22.30;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2887,321,0 chrV 219281 . G A 2621 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.99;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2654,285,0 chrV 219306 . C T 2857 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.64;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2890,318,0 chrV 219365 . T C 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.7001;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-0.144;QD=21.40;ReadPosRankSum=1.684;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3136,351,0 chrV 219410 . A T 3041 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.36;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3074,339,0 chrV 219603 . C T 2873 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.38;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2906,321,0 chrV 219608 . T C 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=0.192;QD=18.28;ReadPosRankSum=1.706;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2537,288,0 chrV 219959 . G A 923 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=11.3153;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=3.55;SB=-2.933e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:956,105,0 chrV 219979 . A C 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=280;Dels=0.00;FS=2.814;HaplotypeScore=6.3226;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=-2.123;QD=9.32;ReadPosRankSum=2.432;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:2,277:280:99:2644,306,0 chrV 219988 . C G 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.363;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=1.455;QD=11.00;ReadPosRankSum=1.350;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:1,262:264:99:2937,342,0 chrV 220073 . T C 4415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=218;Dels=0.00;FS=4.576;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.111;QD=20.25;ReadPosRankSum=1.716;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4415,501,0 chrV 220108 . C T 3913.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=20.4223;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.07;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,191:195:99:3913,423,0 chrV 220406 . G A 4050.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.8341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4050,450,0 chrV 220889 . G A 3069 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.90;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3102,342,0 chrV 220973 . A G 2654 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.09;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2687,309,0 chrV 220993 . T G 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=146;Dels=0.00;FS=6.111;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-0.636;QD=19.42;ReadPosRankSum=2.416;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:2869,321,0 chrV 221538 . T G 3669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.209;QD=23.08;ReadPosRankSum=1.710;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3669,420,0 chrV 221578 . C T 4089.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.6993;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=24.05;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4089,447,0 chrV 221686 . C T 3797.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.58;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3797,423,0 chrV 221810 . C A 2723 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=107.0996;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.88;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2756,300,0 chrV 221826 . A C 300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=123.2236;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=-0.968;QD=2.05;ReadPosRankSum=1.708;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:45:333,45,0 chrV 221992 . T G 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.789;DP=154;Dels=0.00;FS=5.161;HaplotypeScore=14.1407;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.744;QD=23.55;ReadPosRankSum=1.755;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:4,150:154:99:3626,387,0 chrV 222196 . C T 5659.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.35;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:5659,627,0 chrV 222207 . A G 5568.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=10.2551;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.85;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:5568,630,0 chrV 222282 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=181;Dels=0.00;FS=9.074;HaplotypeScore=9.6739;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.550;QD=17.86;ReadPosRankSum=1.730;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3266,381,0 chrV 222293 . A C 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=178;Dels=0.01;FS=0.000;HaplotypeScore=5.2823;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=-1.142;QD=18.03;ReadPosRankSum=1.673;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3243,363,0 chrV 222321 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.5890;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=18.98;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3260,363,0 chrV 222394 . A G 4427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.713;QD=21.08;ReadPosRankSum=2.426;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4427,489,0 chrV 222430 . A G 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.739;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.9834;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=1.036;QD=18.22;ReadPosRankSum=2.954;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:3572,411,0 chrV 222592 . T A 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=141;Dels=0.00;FS=2.945;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.438;QD=22.02;ReadPosRankSum=2.415;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3138,345,0 chrV 222851 . T C 3895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=3.626;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.027;QD=20.50;ReadPosRankSum=1.695;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:3895,453,0 chrV 222941 . G A 3110 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=20.33;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3143,348,0 chrV 223004 . G A 2636 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.5436;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=19.38;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2669,297,0 chrV 223022 . G C 2337 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=19.47;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2370,267,0 chrV 223038 . C T 2359 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=19.66;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2392,258,0 chrV 223147 . A T 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.096;DP=82;Dels=0.00;FS=48.525;HaplotypeScore=4.2354;MLEAC=1;MLEAF=0.500;MQ=48.18;MQ0=0;MQRankSum=1.637;QD=0.41;ReadPosRankSum=-3.295;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,10:82:64:64,0,406 chrV 223164 . C T 791 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.03;FS=0.000;HaplotypeScore=21.0627;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=10.69;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:93:824,93,0 chrV 223173 . G A 1010 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.4328;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=13.12;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1043,117,0 chrV 223251 . T C 1513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=0.409;QD=16.81;ReadPosRankSum=1.693;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1546,180,0 chrV 223252 . C A 1601 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=17.99;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1634,183,0 chrV 223685 . G A 6309.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=14.2313;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.17;SB=-3.234e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:6309,696,0 chrV 224276 . A G 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=183;Dels=0.00;FS=6.792;HaplotypeScore=8.1639;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.356;QD=21.44;ReadPosRankSum=2.423;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3924,465,0 chrV 224681 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.14;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3432,375,0 chrV 225229 . C T 2177 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.93;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2210,246,0 chrV 225494 . G A 803 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=14.34;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:96:836,96,0 chrV 225496 . A G 822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=5.721;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=0.433;QD=14.68;ReadPosRankSum=1.670;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:855,99,0 chrV 225778 . A G 144.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.791;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=0.791;QD=13.10;ReadPosRankSum=1.423;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,10:11:21:177,21,0 chrV 226692 . G T 3114 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=22.09;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3147,342,0 chrV 226704 . C T 2655 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.24;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2688,303,0 chrV 226861 . C T 2075 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.75;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,96:100:99:2108,228,0 chrV 227104 . A G 2157 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=21.79;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2190,243,0 chrV 227105 . C T 2180 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=22.02;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2213,240,0 chrV 227242 . T C 2455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.515;QD=22.12;ReadPosRankSum=1.701;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2488,288,0 chrV 227272 . G A 2457 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.54;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2490,270,0 chrV 227327 . T C 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=3.395;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=-0.617;QD=20.82;ReadPosRankSum=1.703;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2510,282,0 chrV 227341 . T C 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=3.191;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=0.493;QD=21.20;ReadPosRankSum=1.676;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2641,291,0 chrV 227401 . A G 2726 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.65;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2759,318,0 chrV 227534 . T C 2574 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=22.98;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2607,297,0 chrV 227552 . T C 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=3.229;HaplotypeScore=4.8411;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.653;QD=22.08;ReadPosRankSum=1.675;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2727,312,0 chrV 227640 . T C 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=122;Dels=0.00;FS=3.621;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.114;QD=20.35;ReadPosRankSum=1.704;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2516,288,0 chrV 227836 . G A 2514 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.65;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2547,285,0 chrV 227885 . A T 2434 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.35;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2467,267,0 chrV 228004 . G T 2538 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=13.5746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2571,285,0 chrV 228112 . G A 3050 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.20;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3083,351,0 chrV 228115 . A C 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=3.820;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-1.473;QD=20.96;ReadPosRankSum=1.709;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3135,348,0 chrV 228367 . A T 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.081;QD=21.56;ReadPosRankSum=1.288;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2556,266,0 chrV 228481 . A G 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=125;Dels=0.00;FS=6.310;HaplotypeScore=14.7565;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-1.173;QD=23.15;ReadPosRankSum=1.648;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2927,327,0 chrV 228711 . A G 3993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.7696;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.938;QD=19.29;ReadPosRankSum=1.698;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:3993,456,0 chrV 228738 . G A 3807.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.1357;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.14;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3807,417,0 chrV 228774 . A G 4587.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.1501;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.33;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4587,519,0 chrV 229119 . A G 5571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=248;Dels=0.00;FS=3.010;HaplotypeScore=15.1628;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.285;QD=22.46;ReadPosRankSum=1.718;SB=-3.148e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:5571,615,0 chrV 229256 . T C 4960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.100;DP=241;Dels=0.00;FS=10.759;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=-1.325;QD=20.58;ReadPosRankSum=4.058;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:6,234:241:99:4960,558,0 chrV 229265 . A G 4993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=242;Dels=0.00;FS=3.846;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=0.938;QD=20.63;ReadPosRankSum=1.718;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:1,239:242:99:4993,582,0 chrV 229493 . C T 4479.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=21.4728;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.39;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:4479,486,0 chrV 229569 . T C 4640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=218;Dels=0.00;FS=5.990;HaplotypeScore=14.5922;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=0.307;QD=21.28;ReadPosRankSum=2.940;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:3,213:218:99:4640,537,0 chrV 229595 . A G 4376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=205;Dels=0.00;FS=3.722;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-1.191;QD=21.35;ReadPosRankSum=1.715;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4376,501,0 chrV 229616 . C T 4791.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.39;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4791,528,0 chrV 229778 . C T 4264.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.4506;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.50;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4264,468,0 chrV 229809 . C T 4777.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.0244;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.23;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4777,531,0 chrV 229938 . T C 6098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=283;Dels=0.00;FS=5.917;HaplotypeScore=27.8578;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.617;QD=21.55;ReadPosRankSum=2.975;SB=-3.089e+03 GT:AD:DP:GQ:PL 1/1:3,275:283:99:6098,699,0 chrV 230340 . G A 5837.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=18.5465;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.27;SB=-3.287e+03 GT:AD:DP:GQ:PL 1/1:0,287:288:99:5837,666,0 chrV 230406 . T C 5484.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=12.0376;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=18.04;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,303:304:99:5484,642,0 chrV 230421 . C T 5865.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=6.7718;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=18.74;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,312:313:99:5865,642,0 chrV 230583 . A G 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.127;DP=154;Dels=0.00;FS=8.208;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.520;QD=17.10;ReadPosRankSum=3.379;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:4,149:154:99:2667,312,0 chrV 230884 . C T 3567.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.62;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3567,390,0 chrV 230909 . G A 3513.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.96;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3513,378,0 chrV 231027 . A T 3604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.168;DP=162;Dels=0.00;FS=8.998;HaplotypeScore=12.7838;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.556;QD=22.25;ReadPosRankSum=3.405;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:4,158:162:99:3604,396,0 chrV 231096 . C G 4317.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.48;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4317,504,0 chrV 231382 . G A 4567.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.85;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4567,504,0 chrV 231408 . C T 4484.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.53;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4484,486,0 chrV 231438 . T C 3930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=197;Dels=0.00;FS=3.032;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.913;QD=19.95;ReadPosRankSum=2.412;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:2,193:197:99:3930,450,0 chrV 231687 . T C 2782 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.57;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2815,309,0 chrV 231721 . G A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3283,363,0 chrV 231889 . G A 2465 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.61;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2498,288,0 chrV 232000 . A G 2840 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.6703;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.86;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2873,336,0 chrV 232348 . A G 1700 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=18.68;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1733,201,0 chrV 232364 . G C 1713 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=18.62;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1746,201,0 chrV 232392 . G A 2366 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.71;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2399,261,0 chrV 232534 . T C 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.690;QD=20.78;ReadPosRankSum=1.704;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2589,285,0 chrV 232580 . T C 2726 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.16;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2759,324,0 chrV 232869 . A T 5309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=217;Dels=0.00;FS=3.153;HaplotypeScore=8.2850;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.982;QD=24.47;ReadPosRankSum=1.716;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:5309,574,0 chrV 232891 . A G 4697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=212;Dels=0.00;FS=3.031;HaplotypeScore=10.6314;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-0.605;QD=22.16;ReadPosRankSum=1.715;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:4697,546,0 chrV 233195 . T C 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=129;Dels=0.00;FS=3.018;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=1.047;QD=22.57;ReadPosRankSum=2.411;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2944,327,0 chrV 233255 . T C 2701 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.09;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2734,315,0 chrV 233356 . A G 2242 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.20;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2275,255,0 chrV 233420 . C T 2298 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.15;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2331,261,0 chrV 233433 . T C 2168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=3.960;HaplotypeScore=5.1273;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.237;QD=19.36;ReadPosRankSum=1.701;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2201,246,0 chrV 233476 . G A 2456 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.74;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2489,270,0 chrV 233546 . T C 2322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.532;QD=22.33;ReadPosRankSum=1.666;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2355,270,0 chrV 233852 . G A 3343.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.7828;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.88;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3343,360,0 chrV 234209 . G C 3928.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.52;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,163:167:99:3928,435,0 chrV 234239 . G A 3454.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.34;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3454,372,0 chrV 234299 . T C 2933 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.9967;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.57;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2966,342,0 chrV 234626 . T C 4677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.965;DP=203;Dels=0.00;FS=2.577;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.075;QD=23.04;ReadPosRankSum=2.945;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:3,198:203:99:4677,525,0 chrV 234654 . G A 4336.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.7967;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.58;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4336,486,0 chrV 234749 . G A 4409.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4409,486,0 chrV 234931 . G A 3649.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=18.3963;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.66;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3649,393,0 chrV 235485 . A G 3419.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=22.35;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3419,390,0 chrV 235495 . T C 3479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=5.276;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-1.553;QD=22.45;ReadPosRankSum=1.687;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3479,387,0 chrV 235773 . A G 3104 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.99;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3137,351,0 chrV 235812 . A G 2878 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.1315;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2911,324,0 chrV 236202 . A G 9523.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.330;DP=440;Dels=0.00;FS=9.075;HaplotypeScore=25.6482;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.282;QD=21.64;ReadPosRankSum=3.338;SB=-5.309e+03 GT:AD:DP:GQ:PL 1/1:7,433:440:99:9523,1092,0 chrV 236637 . G A 5491.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=17.4367;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.96;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:5491,630,0 chrV 236672 . G A 5897.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=16.6558;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.59;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,258:261:99:5897,631,0 chrV 237393 . G A 2474 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.12;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2507,279,0 chrV 237481 . G C 2342 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.19;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2375,276,0 chrV 238052 . C T 3945.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.92;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3945,426,0 chrV 238604 . A G 2150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=3.424;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.592;QD=21.72;ReadPosRankSum=1.697;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2183,243,0 chrV 238676 . C T 2192 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.49;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2225,246,0 chrV 239036 . T C 2440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.371;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.609;QD=21.59;ReadPosRankSum=1.671;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2473,276,0 chrV 239078 . G T 2283 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.57;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2316,249,0 chrV 239206 . T C 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=126;Dels=0.00;FS=3.645;HaplotypeScore=13.4339;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.621;QD=23.01;ReadPosRankSum=1.649;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2932,333,0 chrV 239238 . C T 2807 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.20;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2840,306,0 chrV 239577 . G A 2869 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.79;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2902,336,0 chrV 239600 . C T 2825 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.56;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2858,309,0 chrV 239782 . C T 3004 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2602;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.44;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3037,330,0 chrV 239810 . G C 3155 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.32;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:3188,363,0 chrV 239875 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=23.48;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3593,414,0 chrV 240009 . C T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.3991;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.73;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3610,405,0 chrV 240035 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=22.76;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3300,372,0 chrV 240086 . C T 2843 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=18.95;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2876,315,0 chrV 240087 . C A 2748 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=18.32;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2781,312,0 chrV 240100 . T G 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=163;Dels=0.00;FS=9.862;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=-1.105;QD=17.33;ReadPosRankSum=2.957;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:2857,330,0 chrV 240196 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.6925;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.09;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3358,381,0 chrV 240293 . C T 5021.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=23.57;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:5021,546,0 chrV 240396 . T A 4118.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.618;QD=22.50;ReadPosRankSum=1.694;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4118,474,0 chrV 240731 . G A 5666.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.94;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:5666,615,0 chrV 240764 . G A 6711.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=22.8799;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.60;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,296:297:99:6711,747,0 chrV 240893 . T C 5408.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=14.5519;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=21.89;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5408,633,0 chrV 241047 . A G 5077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.643;DP=271;Dels=0.00;FS=7.732;HaplotypeScore=14.1668;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=1.005;QD=18.73;ReadPosRankSum=3.770;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:5,266:271:99:5077,579,0 chrV 241059 . G A 4815.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=4.2861;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=18.74;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:4815,543,0 chrV 241084 . G A 4301.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=3.4883;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=18.15;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:4301,459,0 chrV 241109 . G A 3552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.307;DP=214;Dels=0.00;FS=4.513;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=0.670;QD=16.60;ReadPosRankSum=-1.471;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:3552,372,0 chrV 241256 . A G 3379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2496;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-1.231;QD=21.25;ReadPosRankSum=1.710;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3379,399,0 chrV 241325 . G A 3198 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=14.4132;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.52;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3231,351,0 chrV 241371 . A G 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.1134;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.997;QD=22.90;ReadPosRankSum=1.685;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3343,378,0 chrV 241522 . C T 2462 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.3109;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.85;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2495,279,0 chrV 241647 . A G 1768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.739;DP=90;Dels=0.01;FS=5.890;HaplotypeScore=17.6155;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-1.262;QD=19.64;ReadPosRankSum=1.762;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:3,86:89:99:1801,188,0 chrV 241759 . C T 1464 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.87;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1497,162,0 chrV 241777 . T C 1262 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.12;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1295,147,0 chrV 241799 . C A 1245 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=21.84;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1278,141,0 chrV 241800 . C G 1252 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=21.22;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1285,147,0 chrV 241849 . G A 1165 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=19.42;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1198,129,0 chrV 241893 . A T 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;DP=51;Dels=0.00;FS=7.466;HaplotypeScore=14.1459;MLEAC=1;MLEAF=0.500;MQ=39.98;MQ0=0;MQRankSum=-0.950;QD=0.32;ReadPosRankSum=-2.821;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,6:51:46:46,0,153 chrV 241921 . C A 1019 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=15.68;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1052,114,0 chrV 241980 . G A 2879 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=23.03;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2912,312,0 chrV 242159 . T C 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=183;Dels=0.00;FS=3.028;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=1.000;QD=19.95;ReadPosRankSum=2.369;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3651,426,0 chrV 242167 . G A 4098.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0411;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=20.49;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4098,447,0 chrV 242361 . C G 5773.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.33;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,282:284:99:5773,666,0 chrV 242385 . A T 4979.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=18.72;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:4979,540,0 chrV 242413 . T C 4165.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=4.6447;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=15.78;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:4165,471,0 chrV 242456 . A G 2534 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.0877;MLEAC=2;MLEAF=1.00;MQ=31.20;MQ0=0;QD=12.18;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:2567,285,0 chrV 242461 . T A 2613 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=30.09;MQ0=0;QD=12.15;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:2646,285,0 chrV 242472 . T C 2639 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.99;MQ0=0;QD=11.83;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:2672,318,0 chrV 242481 . G A 3503.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=40.16;MQ0=0;QD=14.84;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:3503,378,0 chrV 242516 . C T 4258.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=15.21;SB=-3.264e+03 GT:AD:DP:GQ:PL 1/1:0,280:280:99:4258,465,0 chrV 242526 . T C 4796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=308;Dels=0.00;FS=3.015;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-1.127;QD=15.57;ReadPosRankSum=2.402;SB=-3.982e+03 GT:AD:DP:GQ:PL 1/1:2,306:308:99:4796,534,0 chrV 242692 . G A 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;DP=218;Dels=0.00;FS=5.171;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=46.30;MQ0=0;MQRankSum=0.044;QD=0.11;ReadPosRankSum=-3.380;SB=-1.820e+02 GT:AD:DP:GQ:PL 0/1:214,4:218:31:55,0,31 chrV 242693 . G A 105.13 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;QD=0.48;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:18:138,18,0 chrV 242834 . G A 3277.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=15.1313;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.99;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3277,363,0 chrV 242907 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.1396;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=20.04;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3406,375,0 chrV 242916 . G A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=19.64;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3437,378,0 chrV 242940 . A T 3275.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=19.49;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3275,354,0 chrV 243090 . C G 4203.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.61;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4203,489,0 chrV 243157 . A C 3814.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.57;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3814,438,0 chrV 243299 . T C 3978.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.1187;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=22.10;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3978,444,0 chrV 243371 . T C 4225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=23.9585;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.606;QD=21.89;ReadPosRankSum=1.696;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4225,492,0 chrV 243786 . A T 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;DP=23;Dels=0.00;FS=50.171;HaplotypeScore=6.6640;MLEAC=1;MLEAF=0.500;MQ=55.86;MQ0=0;MQRankSum=0.462;QD=0.49;ReadPosRankSum=-0.523;SB=-8.884e-01 GT:AD:DP:GQ:PL 0/1:11,12:23:41:41,0,105 chrV 243892 . A T 2799 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2832,312,0 chrV 243969 . A G 2306 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.83;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2339,258,0 chrV 243981 . G A 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=8.109;HaplotypeScore=4.2726;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-0.189;QD=22.42;ReadPosRankSum=1.638;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:1,109:113:99:2567,279,0 chrV 244286 . C T 3445.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.9700;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.63;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3445,375,0 chrV 244404 . T A 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.719;DP=169;Dels=0.00;FS=10.962;HaplotypeScore=15.6479;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=0.012;QD=20.90;ReadPosRankSum=2.958;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3532,393,0 chrV 244611 . G A 3094 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.7969;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.79;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3127,351,0 chrV 244650 . C T 2826 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=20.19;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2859,309,0 chrV 244656 . A G 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=144;Dels=0.00;FS=2.993;HaplotypeScore=5.2149;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=0.009;QD=19.95;ReadPosRankSum=2.381;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:2906,327,0 chrV 244845 . G A 2763 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3857;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=21.42;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2796,306,0 chrV 244851 . G C 2640 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=19.13;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2673,315,0 chrV 244872 . T C 2840 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=20.00;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2873,330,0 chrV 245743 . T C 3776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=19.7170;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.430;QD=21.95;ReadPosRankSum=1.712;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3776,420,0 chrV 245792 . A G 4089.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.4416;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=20.76;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4089,462,0 chrV 245814 . G C 3702.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=19.28;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3702,417,0 chrV 245832 . C T 3652.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.9783;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=18.54;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3652,408,0 chrV 245855 . G C 3439.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=16.69;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:3439,390,0 chrV 245861 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=16.33;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3185,363,0 chrV 245940 . G A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.45;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3354,372,0 chrV 245987 . A G 4336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.1419;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-0.778;QD=22.01;ReadPosRankSum=1.714;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4336,486,0 chrV 246194 . T C 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=194;Dels=0.00;FS=3.025;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-0.209;QD=18.47;ReadPosRankSum=2.146;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:3584,408,0 chrV 246195 . C T 3648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=197;Dels=0.00;FS=3.021;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=1.635;QD=18.52;ReadPosRankSum=2.074;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:3648,408,0 chrV 246498 . A C 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=149;Dels=0.00;FS=2.656;HaplotypeScore=8.3885;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=-0.553;QD=21.36;ReadPosRankSum=2.400;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3215,363,0 chrV 246515 . G C 2854 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=19.55;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2887,321,0 chrV 246542 . C G 2839 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=19.85;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2872,324,0 chrV 246564 . A T 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=0.410;QD=19.09;ReadPosRankSum=2.370;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2381,261,0 chrV 246588 . T C 2153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=4.925;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=0.045;QD=18.56;ReadPosRankSum=1.702;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2186,255,0 chrV 246604 . T C 2099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=114;Dels=0.00;FS=4.364;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-1.547;QD=18.41;ReadPosRankSum=1.670;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2132,246,0 chrV 246625 . T G 1946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=109;Dels=0.00;FS=3.802;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=0.770;QD=17.85;ReadPosRankSum=1.668;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:1979,228,0 chrV 246716 . C T 2447 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.1038;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.25;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2480,276,0 chrV 246845 . G C 2615 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.02;FS=0.000;HaplotypeScore=10.2578;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=19.81;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2648,303,0 chrV 246906 . G A 2408 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.7145;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=17.84;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2441,267,0 chrV 246907 . G A 2400 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.1156;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.91;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2433,264,0 chrV 247147 . G A 3964.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.5840;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.78;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3964,438,0 chrV 247282 . T C 2760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=150;Dels=0.00;FS=3.709;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.889;QD=18.40;ReadPosRankSum=1.685;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:2793,315,0 chrV 247381 . G T 3883.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3883,420,0 chrV 247618 . G A 3132 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3165,348,0 chrV 248281 . C T 3809.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.7833;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=18.67;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3809,426,0 chrV 248286 . A G 3704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=208;Dels=0.00;FS=3.017;HaplotypeScore=6.0144;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;MQRankSum=1.175;QD=17.81;ReadPosRankSum=2.391;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:3704,429,0 chrV 248691 . T G 3462.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.21;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3462,396,0 chrV 248822 . A G 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=-0.458;QD=22.99;ReadPosRankSum=1.667;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2470,273,0 chrV 248829 . G T 2239 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=22.17;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2272,246,0 chrV 248843 . A T 2382 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=22.26;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2415,264,0 chrV 248879 . G A 2305 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3804;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=21.75;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2338,255,0 chrV 248974 . T C 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=113;Dels=0.00;FS=3.168;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.186;QD=22.88;ReadPosRankSum=1.670;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2618,297,0 chrV 249041 . A G 43.97 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=0.55;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:9:76,9,0 chrV 249123 . G A 2594 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=21.09;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2627,282,0 chrV 249135 . T A 2654 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=20.57;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2687,288,0 chrV 249157 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=18.93;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2570,285,0 chrV 249177 . T C 2278 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=17.66;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2311,267,0 chrV 249496 . A C 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=157;Dels=0.00;FS=2.992;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=0.606;QD=22.32;ReadPosRankSum=2.355;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3505,396,0 chrV 249511 . T C 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=3.353;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=1.272;QD=21.13;ReadPosRankSum=1.710;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3339,390,0 chrV 249613 . C T 3763.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.4978;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=24.12;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3763,423,0 chrV 249705 . C A 3089 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.6036;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;QD=23.95;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3122,348,0 chrV 249798 . G T 1117 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1150,123,0 chrV 249807 . C G 861 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:894,102,0 chrV 249809 . G A 849 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:96:882,96,0 chrV 249825 . T C 620 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.54;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:75:653,75,0 chrV 249834 . T A 849 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:96:882,96,0 chrV 249845 . T G 805 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:96:838,96,0 chrV 249884 . G A 788 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=14.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:90:821,90,0 chrV 249887 . T C 753 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=13.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:90:786,90,0 chrV 249901 . G A 781 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=18.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:87:814,87,0 chrV 249912 . T A 570 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.427;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;MQRankSum=-0.306;QD=16.76;ReadPosRankSum=1.427;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:1,33:34:66:603,66,0 chrV 249917 . A T 470 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;MQRankSum=1.139;QD=13.43;ReadPosRankSum=1.634;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:1,34:35:54:503,54,0 chrV 250059 . A G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.50;MQ0=6;QD=2.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,2:8:6:50,6,0 chrV 250078 . T C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.68;MQ0=2;QD=5.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:52,6,0 chrV 250082 . G A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.18;MQ0=2;QD=4.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:6:56,6,0 chrV 250125 . C T 16.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;DP=14;Dels=0.00;FS=6.532;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=14.21;MQ0=5;MQRankSum=0.762;QD=1.16;ReadPosRankSum=0.762;SB=-1.357e+00 GT:AD:DP:GQ:PL 0/1:3,11:14:13:46,0,13 chrV 250263 . A C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=9.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:51,6,0 chrV 250508 . A T 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=112;Dels=0.00;FS=5.177;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=0.959;QD=20.18;ReadPosRankSum=1.608;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2293,252,0 chrV 250547 . C A 2486 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.03;FS=0.000;HaplotypeScore=12.2158;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.07;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2519,282,0 chrV 250573 . G A 3183 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.58;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3216,351,0 chrV 250605 . T C 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=133;Dels=0.00;FS=2.579;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.947;QD=22.07;ReadPosRankSum=2.357;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2968,339,0 chrV 250692 . T C 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-0.122;QD=23.79;ReadPosRankSum=1.659;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3378,396,0 chrV 251006 . C G 3501.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.03;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3501,405,0 chrV 251232 . G A 2293 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9429;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.48;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2326,252,0 chrV 251267 . C T 2336 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6983;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=20.67;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2369,264,0 chrV 251273 . A G 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.762;DP=115;Dels=0.01;FS=18.015;HaplotypeScore=9.2002;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=-0.197;QD=19.13;ReadPosRankSum=3.762;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:5,107:114:99:2233,246,0 chrV 251309 . G A 2570 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=19.32;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2603,285,0 chrV 251322 . C T 2461 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.08;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2494,276,0 chrV 251581 . T C 918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.01;FS=3.680;HaplotypeScore=9.9177;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.041;QD=10.67;ReadPosRankSum=1.650;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:951,114,0 chrV 251605 . T G 1603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.7884;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-1.137;QD=15.27;ReadPosRankSum=2.286;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:1636,186,0 chrV 251700 . T C 2797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.2248;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=-0.494;QD=21.68;ReadPosRankSum=2.392;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:2,125:129:99:2830,321,0 chrV 251702 . A G 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.668;HaplotypeScore=4.2248;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=0.189;QD=22.84;ReadPosRankSum=1.678;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2956,330,0 chrV 251719 . G T 2946 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=23.02;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2979,327,0 chrV 251721 . G A 3007 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=23.13;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3040,327,0 chrV 251925 . T A 3443.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=23.26;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3443,387,0 chrV 251970 . T C 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.8825;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=0.125;QD=23.66;ReadPosRankSum=1.687;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3668,414,0 chrV 252072 . G A 3603.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.19;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3603,390,0 chrV 252078 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.73;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3399,369,0 chrV 252103 . C A 2887 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=18.16;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2920,333,0 chrV 253377 . G A 4537.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4537,495,0 chrV 253643 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.36;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3508,378,0 chrV 253920 . T G 38.97 filter AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=116.9015;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=0.32;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:9:71,9,0 chrV 253929 . T C 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=0.363;QD=18.67;ReadPosRankSum=1.704;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2348,270,0 chrV 254021 . T G 3357.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.09;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3357,393,0 chrV 254085 . T C 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=150;Dels=0.00;FS=6.167;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.680;QD=20.61;ReadPosRankSum=2.351;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3125,348,0 chrV 254274 . T A 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.039;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.509;QD=22.27;ReadPosRankSum=1.709;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3408,384,0 chrV 254391 . G A 4026.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=21.5958;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=23.54;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4026,444,0 chrV 254589 . G A 4122.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4122,441,0 chrV 254651 . G T 3660.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.02;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3660,399,0 chrV 254694 . G A 3589.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.15;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3589,387,0 chrV 254754 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.50;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2801,312,0 chrV 254864 . A C 3038 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.1691;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.01;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3071,354,0 chrV 254950 . A T 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.670;QD=22.71;ReadPosRankSum=1.701;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2576,276,0 chrV 255120 . A C 3476.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.48;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3476,396,0 chrV 255255 . T C 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=176;Dels=0.00;FS=3.680;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.158;QD=20.96;ReadPosRankSum=1.692;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3689,435,0 chrV 255344 . G A 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=167;Dels=0.00;FS=3.876;HaplotypeScore=15.8790;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.167;QD=22.52;ReadPosRankSum=1.085;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3761,414,0 chrV 255444 . T G 2886 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2919,330,0 chrV 255834 . A G 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.9421;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.462;QD=22.49;ReadPosRankSum=1.658;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3227,378,0 chrV 255918 . G T 3084 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3117,339,0 chrV 256048 . G C 2506 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.24;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2539,282,0 chrV 256101 . T C 1668 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=17.20;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1701,192,0 chrV 256159 . T C 1731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=90;Dels=0.00;FS=12.804;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.328;QD=19.23;ReadPosRankSum=2.368;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1764,195,0 chrV 256810 . A G 4744.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.38;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4744,558,0 chrV 257632 . C T 5115.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=15.5504;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.83;SB=-2.950e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5115,552,0 chrV 258361 . A G 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.468;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.000;QD=23.50;ReadPosRankSum=1.703;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2876,324,0 chrV 258489 . C T 2517 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.08;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2550,279,0 chrV 258531 . G T 2660 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.74;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2693,294,0 chrV 258552 . A G 2811 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.31;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2844,324,0 chrV 258644 . G A 3047 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9360;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.62;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3080,345,0 chrV 258666 . G A 3295.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.68;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3295,366,0 chrV 258720 . C T 3515.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.28;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3515,378,0 chrV 259303 . A G 5667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=241;Dels=0.00;FS=3.271;HaplotypeScore=16.2284;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.602;QD=23.51;ReadPosRankSum=1.718;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:1,239:241:99:5667,642,0 chrV 259415 . C G 5190.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=20.6517;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.27;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5190,576,0 chrV 259466 . T C 4902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=223;Dels=0.00;FS=10.006;HaplotypeScore=18.9283;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.068;QD=21.98;ReadPosRankSum=2.969;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:3,220:223:99:4902,546,0 chrV 259547 . T C 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=174;Dels=0.00;FS=5.082;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=1.712;QD=21.95;ReadPosRankSum=1.712;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3819,444,0 chrV 259762 . T A 1807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=0.559;QD=20.77;ReadPosRankSum=0.530;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1840,198,0 chrV 259785 . G A 1512 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=18.00;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1545,174,0 chrV 259803 . T A 1658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=81;Dels=0.00;FS=6.085;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;MQRankSum=-0.063;QD=20.47;ReadPosRankSum=2.788;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1691,183,0 chrV 259945 . A G 2617 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;QD=16.06;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2650,297,0 chrV 260054 . A G 2390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=151;Dels=0.00;FS=3.037;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;MQRankSum=0.855;QD=15.83;ReadPosRankSum=2.416;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:2,146:151:99:2423,279,0 chrV 260078 . T C 3064 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.1436;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=19.90;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3097,360,0 chrV 260106 . G C 3457.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.12;MQ0=0;QD=20.34;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3457,399,0 chrV 260120 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;QD=20.08;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3635,399,0 chrV 260126 . T C 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.01;FS=5.097;HaplotypeScore=7.8215;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;MQRankSum=-0.821;QD=17.96;ReadPosRankSum=1.679;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3520,399,0 chrV 260269 . C T 2949 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.01;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2982,327,0 chrV 260327 . A G 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=135;Dels=0.00;FS=3.278;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=1.680;QD=22.10;ReadPosRankSum=1.706;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3016,339,0 chrV 260511 . C T 2722 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.88;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2755,297,0 chrV 260734 . T C 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.137;DP=126;Dels=0.00;FS=2.699;HaplotypeScore=9.8198;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.869;QD=22.29;ReadPosRankSum=2.333;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2842,315,0 chrV 260905 . C T 3298.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.97;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3298,360,0 chrV 261117 . G T 2947 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.50;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2980,342,0 chrV 261193 . A T 2367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=101;Dels=0.00;FS=7.895;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.792;QD=23.44;ReadPosRankSum=2.401;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2400,261,0 chrV 261299 . C T 2210 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.46;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2243,249,0 chrV 261345 . A C 1039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=0.260;QD=12.83;ReadPosRankSum=1.689;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1072,123,0 chrV 261429 . G A 1311 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=19.28;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1344,153,0 chrV 261462 . T A 466 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.4490;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=8.96;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:54:499,54,0 chrV 261787 . G A 2891 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=20.08;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2924,324,0 chrV 261965 . C T 5040.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.01;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5040,561,0 chrV 262023 . A G 3912.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.3833;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=20.92;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3912,462,0 chrV 262033 . T A 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=-0.068;QD=20.82;ReadPosRankSum=1.713;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3748,420,0 chrV 262042 . C T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.0132;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=21.05;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3810,414,0 chrV 262166 . A G 4969.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.3470;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.18;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4969,558,0 chrV 262212 . A G 5364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=248;Dels=0.00;FS=6.064;HaplotypeScore=17.4755;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.258;QD=21.63;ReadPosRankSum=2.955;SB=-3.054e+03 GT:AD:DP:GQ:PL 1/1:3,243:248:99:5364,591,0 chrV 262462 . A T 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.362;QD=20.98;ReadPosRankSum=1.693;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3735,423,0 chrV 262655 . T C 2281 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.04;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2314,264,0 chrV 262739 . C T 3173 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.19;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3206,354,0 chrV 262777 . T C 3776.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.45;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3776,429,0 chrV 262797 . T C 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.9816;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=-1.327;QD=21.91;ReadPosRankSum=1.692;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3768,429,0 chrV 262844 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.07;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3109,345,0 chrV 262877 . A G 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=145;Dels=0.00;FS=3.195;HaplotypeScore=8.2926;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.144;QD=21.23;ReadPosRankSum=1.708;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3112,363,0 chrV 262951 . T G 4567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=207;Dels=0.00;FS=3.382;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=1.347;QD=22.06;ReadPosRankSum=1.699;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4567,522,0 chrV 262975 . C G 4378.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.57;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,198:203:99:4378,492,0 chrV 263493 . G A 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=1.439;QD=23.67;ReadPosRankSum=0.499;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2826,309,0 chrV 263549 . T C 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.6475;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.307;QD=22.38;ReadPosRankSum=1.699;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2405,273,0 chrV 263735 . A C 2428 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.68;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2461,282,0 chrV 264464 . C T 3009 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.80;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3042,333,0 chrV 264478 . G A 2980 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=19.23;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3013,336,0 chrV 264522 . T A 2990 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.34;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3023,330,0 chrV 264534 . G A 2988 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.47;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3021,330,0 chrV 264668 . G A 2085 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.18;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2118,231,0 chrV 264738 . G T 1702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.048;DP=85;Dels=0.04;FS=3.644;HaplotypeScore=11.4655;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.748;QD=20.02;ReadPosRankSum=-0.834;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1735,186,0 chrV 265447 . C T 5158.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=14.2367;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.03;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5158,561,0 chrV 265533 . T C 3625.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.0575;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.71;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3625,420,0 chrV 265623 . C T 3706.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.9248;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.74;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3706,399,0 chrV 265681 . G T 3983.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.25;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3983,441,0 chrV 265809 . C T 2089 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.76;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2122,231,0 chrV 265870 . T G 2452 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.51;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2485,288,0 chrV 265876 . G A 2428 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.48;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2461,273,0 chrV 265937 . T C 1081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.164;DP=70;Dels=0.00;FS=9.294;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.125;QD=15.44;ReadPosRankSum=2.379;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:2,67:70:99:1114,129,0 chrV 265995 . T C 1304 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=17.39;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1337,159,0 chrV 265997 . G A 1494 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.40;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1527,168,0 chrV 266029 . T C 1863 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=18.45;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1896,216,0 chrV 266122 . A G 1758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=5.191;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.957;QD=23.13;ReadPosRankSum=1.687;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1791,201,0 chrV 266266 . C T 1741 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.3477;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=17.59;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1774,198,0 chrV 266704 . G A 5344.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=20.88;SB=-2.975e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5344,582,0 chrV 266707 . A G 5149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.825;DP=258;Dels=0.00;FS=11.240;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=-1.083;QD=19.96;ReadPosRankSum=3.776;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:5,253:258:99:5149,579,0 chrV 266722 . C A 5656.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.26;SB=-3.173e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:5656,606,0 chrV 266814 . A G 5019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=235;Dels=0.00;FS=2.943;HaplotypeScore=13.7459;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.507;QD=21.36;ReadPosRankSum=2.408;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:2,233:235:99:5019,564,0 chrV 266836 . G A 4437.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.0800;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.64;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4437,495,0 chrV 266932 . T C 4902.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.361;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=8.2975;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=11;MQRankSum=1.480;QD=20.26;ReadPosRankSum=0.619;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:10,229:242:99:4902,552,0 chrV 267010 . C T 4593.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.6390;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.08;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4593,510,0 chrV 267067 . G A 4666.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.57;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4666,510,0 chrV 267146 . G C 4729.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.10;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4729,540,0 chrV 267318 . T C 4918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.439;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=22.5078;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.040;QD=22.35;ReadPosRankSum=0.615;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:1,216:220:99:4918,553,0 chrV 267673 . G A 4855.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.40;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4855,525,0 chrV 267884 . A G 4454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.5868;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.781;QD=22.84;ReadPosRankSum=1.714;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4454,495,0 chrV 268231 . C T 1555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.025;QD=22.21;ReadPosRankSum=-1.732;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1588,180,0 chrV 268692 . C T 3334.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2350;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.84;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3334,369,0 chrV 268713 . C T 3018 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.04;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3051,330,0 chrV 268979 . T C 2219 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=21.97;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2252,255,0 chrV 269034 . A C 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;MQRankSum=-0.149;QD=19.28;ReadPosRankSum=1.702;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2269,258,0 chrV 269057 . A G 1978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=110;Dels=0.00;FS=6.071;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;MQRankSum=-1.780;QD=17.98;ReadPosRankSum=2.936;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:3,107:110:99:2011,222,0 chrV 269064 . C T 1846 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.80;MQ0=0;QD=17.09;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1879,204,0 chrV 269076 . T C 1372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=3.051;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.48;MQ0=0;MQRankSum=0.405;QD=12.82;ReadPosRankSum=-0.146;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1405,162,0 chrV 269099 . C T 723 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.03;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=31.93;MQ0=0;QD=7.30;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:81:756,81,0 chrV 269109 . T A 810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=97;Dels=0.00;FS=3.957;HaplotypeScore=3.6335;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=0;MQRankSum=-0.946;QD=8.35;ReadPosRankSum=1.696;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:93:843,93,0 chrV 269123 . G C 925 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=9.64;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:958,111,0 chrV 269126 . G T 978 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=33.46;MQ0=0;QD=9.88;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1011,108,0 chrV 269141 . A G 1252 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1209;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=12.04;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1285,150,0 chrV 269226 . G A 2335 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.5776;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=20.30;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2368,261,0 chrV 269239 . T C 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=0.383;QD=20.50;ReadPosRankSum=1.701;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2349,267,0 chrV 269314 . A G 1814 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=19.93;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1847,216,0 chrV 269407 . A G 3149 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=23.33;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3182,372,0 chrV 269898 . A C 1918 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.55;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1951,222,0 chrV 269917 . C G 2062 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.26;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2095,243,0 chrV 269982 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.19;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2955,327,0 chrV 270049 . A T 3640.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.00;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3640,396,0 chrV 270213 . A T 5065.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.6094;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.47;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5065,552,0 chrV 270284 . C T 3428.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.16;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3428,375,0 chrV 270466 . C A 2382 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=2.9492;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=19.69;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2415,261,0 chrV 270483 . T A 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=3.823;HaplotypeScore=4.6272;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-0.831;QD=18.63;ReadPosRankSum=1.676;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2324,252,0 chrV 271135 . T A 5253.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.7916;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=23.88;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5253,573,0 chrV 271177 . C T 4100.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=21.24;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4100,456,0 chrV 271185 . C T 4171.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=21.84;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4171,456,0 chrV 271202 . T C 3659.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=20.22;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3659,417,0 chrV 271319 . T C 2386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=5.192;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=0.335;QD=19.88;ReadPosRankSum=1.674;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2419,276,0 chrV 271332 . A G 2050 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=39.62;MQ0=0;MQRankSum=-0.808;QD=19.34;ReadPosRankSum=1.699;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2083,240,0 chrV 271333 . T A 2130 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=5.160;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=39.38;MQ0=0;MQRankSum=-0.841;QD=20.29;ReadPosRankSum=1.666;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2163,240,0 chrV 271334 . T C 1975 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=5.160;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=39.38;MQ0=0;MQRankSum=-1.633;QD=18.81;ReadPosRankSum=1.633;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2008,240,0 chrV 271367 . G A 1773 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;QD=15.42;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1806,201,0 chrV 271374 . G A 1922 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=16.57;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:1955,219,0 chrV 271409 . G A 2437 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=18.60;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2470,267,0 chrV 271489 . T C 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=1.173;QD=19.52;ReadPosRankSum=1.695;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1868,216,0 chrV 271540 . T C 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.5897;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.946;QD=23.55;ReadPosRankSum=1.674;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2835,324,0 chrV 271596 . G A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=114.9166;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=0.18;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:6:54,6,0 chrV 271636 . C T 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=5.826;HaplotypeScore=14.0262;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-1.619;QD=18.97;ReadPosRankSum=1.596;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2935,321,0 chrV 271694 . G A 5404.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.70;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5404,579,0 chrV 271934 . T C 5609.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.08;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,249:254:99:5609,627,0 chrV 272025 . C T 3760.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.4983;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.65;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3760,423,0 chrV 272169 . T C 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=147;Dels=0.00;FS=3.030;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.314;QD=22.86;ReadPosRankSum=2.348;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:3361,378,0 chrV 272259 . T C 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=-1.229;QD=20.63;ReadPosRankSum=2.417;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3148,354,0 chrV 272269 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=19.15;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3058,345,0 chrV 272475 . G A 4397.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.7715;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.64;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4397,474,0 chrV 273522 . C G 3672.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.84;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3672,408,0 chrV 273596 . G C 3651.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=15.2609;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.96;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3651,408,0 chrV 273721 . T A 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.642;QD=24.86;ReadPosRankSum=1.710;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3829,417,0 chrV 274193 . G A 3085 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.88;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3118,342,0 chrV 274322 . G A 2932 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2965,330,0 chrV 274459 . T G 4629.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.11;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4629,510,0 chrV 275286 . T C 3087 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.37;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3120,348,0 chrV 275769 . G A 4291.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.03;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4291,471,0 chrV 276209 . C A 4654.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=16.5293;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.62;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4654,504,0 chrV 276240 . G A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.5697;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.58;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3366,381,0 chrV 276585 . T C 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=141;Dels=0.00;FS=2.817;HaplotypeScore=10.0563;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.500;QD=22.67;ReadPosRankSum=2.309;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3230,375,0 chrV 276619 . G T 2756 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.41;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2789,318,0 chrV 276637 . C T 2959 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=20.99;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2992,330,0 chrV 276708 . C T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.70;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3609,390,0 chrV 276757 . T C 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=3.563;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=1.383;QD=19.74;ReadPosRankSum=1.710;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3171,366,0 chrV 276799 . A C 2744 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.06;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2777,324,0 chrV 276940 . T A 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=147;Dels=0.00;FS=3.070;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-1.732;QD=20.82;ReadPosRankSum=1.708;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3093,345,0 chrV 276998 . C T 3968.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=21.92;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3968,435,0 chrV 277003 . C T 3958.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.28;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3958,429,0 chrV 277931 . A G 1026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=158;Dels=0.00;FS=7.304;HaplotypeScore=8.8316;MLEAC=2;MLEAF=1.00;MQ=25.50;MQ0=1;MQRankSum=-2.262;QD=6.49;ReadPosRankSum=2.371;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:2,156:158:99:1059,123,0 chrV 277947 . A G 127.13 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.75;MQ0=1;QD=0.88;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,144:144:18:160,18,0 chrV 277954 . G A 183.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=13.35;MQ0=2;QD=1.33;SB=-3.878e-02 GT:AD:DP:GQ:PL 1/1:0,138:138:24:216,24,0 chrV 277956 . A G 220 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=141;Dels=0.00;FS=10.122;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=13.77;MQ0=3;MQRankSum=-0.336;QD=1.56;ReadPosRankSum=2.891;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:3,138:141:30:253,30,0 chrV 277969 . T C 928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=2;MQRankSum=-1.371;QD=5.62;ReadPosRankSum=1.711;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:1,164:165:99:961,111,0 chrV 277972 . C T 1144 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=2;QD=6.81;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,168:168:99:1177,129,0 chrV 278110 . G C 2197 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;QD=13.99;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2230,255,0 chrV 278270 . A G 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=118;Dels=0.00;FS=3.780;HaplotypeScore=94.7810;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;MQRankSum=1.643;QD=18.16;ReadPosRankSum=1.673;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2176,243,0 chrV 278456 . C T 4572.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.57;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4572,498,0 chrV 278472 . C T 4825.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=23.77;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4825,528,0 chrV 279216 . T C 4432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.5457;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-0.265;QD=22.38;ReadPosRankSum=1.697;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4432,495,0 chrV 279222 . G A 4114.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=20.99;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4114,465,0 chrV 279267 . G A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.35;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3800,423,0 chrV 279303 . C T 3982.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.89;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3982,444,0 chrV 279413 . A G 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.743;DP=168;Dels=0.00;FS=5.744;HaplotypeScore=7.1244;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=1.389;QD=19.55;ReadPosRankSum=2.898;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3285,372,0 chrV 279422 . T C 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=3.774;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=0.816;QD=19.28;ReadPosRankSum=1.710;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3022,348,0 chrV 279481 . A G 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=164;Dels=0.00;FS=3.000;HaplotypeScore=12.9903;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-1.711;QD=20.79;ReadPosRankSum=2.419;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3410,381,0 chrV 279726 . A T 2683 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.6265;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.33;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2716,300,0 chrV 279883 . G A 3072 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.19;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3105,333,0 chrV 279907 . C T 3325.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.58;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3325,369,0 chrV 280038 . G A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=20.71;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3582,411,0 chrV 280050 . A G 3516.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.44;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3516,402,0 chrV 280218 . C T 4624.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.68;SB=-2.904e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4624,507,0 chrV 280223 . G A 4578.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=3.0430;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.08;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:0,236:240:99:4578,495,0 chrV 280539 . G A 4923.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.90;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4923,543,0 chrV 280780 . T C 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.196;DP=127;Dels=0.00;FS=8.081;HaplotypeScore=5.7342;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.439;QD=22.87;ReadPosRankSum=2.372;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2937,330,0 chrV 280826 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.13;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2689,300,0 chrV 280959 . C T 2650 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.8328;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.63;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2683,318,0 chrV 281045 . G A 3490.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.81;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3490,399,0 chrV 281180 . A G 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=1.212;QD=22.59;ReadPosRankSum=1.714;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4359,486,0 chrV 281222 . C T 4570.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.62;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4570,504,0 chrV 281418 . C T 4011.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=22.79;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4011,429,0 chrV 281429 . A G 3680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=171;Dels=0.00;FS=6.097;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=0.381;QD=21.52;ReadPosRankSum=2.378;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3680,423,0 chrV 281587 . A G 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.1373;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-1.043;QD=22.39;ReadPosRankSum=1.692;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3829,438,0 chrV 281641 . A G 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=133;Dels=0.01;FS=5.848;HaplotypeScore=8.7755;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-1.192;QD=19.65;ReadPosRankSum=2.870;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:3,128:132:99:2647,297,0 chrV 281645 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=19.59;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2580,279,0 chrV 281802 . T C 2670 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.25;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2703,309,0 chrV 281939 . T C 3203 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.9483;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.35;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3236,366,0 chrV 282084 . T C 2921 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.01;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2954,342,0 chrV 282225 . T C 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=5.197;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.247;QD=22.12;ReadPosRankSum=1.713;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4025,468,0 chrV 282297 . C T 2334 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.66;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2367,270,0 chrV 282737 . A C 5503.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.3381;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.12;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5503,639,0 chrV 282873 . C G 4365.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.93;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4365,486,0 chrV 283424 . T C 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.123;DP=151;Dels=0.00;FS=8.518;HaplotypeScore=10.2204;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.083;QD=20.45;ReadPosRankSum=2.787;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:4,147:151:99:3121,336,0 chrV 283533 . T G 3651.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.5365;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.73;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3651,408,0 chrV 284148 . A G 2886 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=23.09;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2919,327,0 chrV 284163 . C T 2796 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=24.74;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2829,303,0 chrV 284185 . T C 2152 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.7474;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.50;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2185,246,0 chrV 284190 . A T 2220 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=22.89;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2253,243,0 chrV 284262 . G A 1658 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1691,183,0 chrV 284601 . T A 2194 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.16;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2227,237,0 chrV 284613 . T C 2226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.449;QD=20.61;ReadPosRankSum=1.668;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2259,261,0 chrV 284680 . G A 3402.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=15.2344;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.09;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3402,369,0 chrV 285118 . T C 5084.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.2754;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.80;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5084,585,0 chrV 285220 . T G 4159.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.3658;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4159,465,0 chrV 285738 . T C 4106.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.7387;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4106,474,0 chrV 286660 . G A 3766.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.69;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3766,414,0 chrV 286762 . G A 4129.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.9315;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.32;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4129,453,0 chrV 286882 . A G 3013 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.37;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3046,342,0 chrV 286966 . G T 2693 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.95;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2726,306,0 chrV 286967 . G A 2780 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.14;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2813,309,0 chrV 287299 . G T 2683 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.55;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2716,300,0 chrV 287375 . C T 3107 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.85;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3140,354,0 chrV 287548 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9158;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.965;QD=24.47;ReadPosRankSum=-0.866;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3426,369,0 chrV 287597 . T C 2665 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=20.66;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2698,300,0 chrV 287599 . T G 2513 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=19.63;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2546,291,0 chrV 287659 . G A 2243 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=17.25;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2276,252,0 chrV 287674 . G A 1991 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=16.45;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2024,228,0 chrV 287796 . G A 2538 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.94;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2571,288,0 chrV 287802 . A G 2439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-0.540;QD=19.51;ReadPosRankSum=1.704;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2472,276,0 chrV 287979 . A C 2423 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.44;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2456,276,0 chrV 288301 . T C 2717 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.56;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2750,312,0 chrV 288331 . C G 2717 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=19.27;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2750,309,0 chrV 288341 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.10;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2967,324,0 chrV 288745 . A G 3538.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3145;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=22.39;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3538,399,0 chrV 289034 . G A 4859.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=16.3709;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.59;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4859,537,0 chrV 289087 . C G 3779.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.01;FS=0.000;HaplotypeScore=2.5981;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=21.11;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3779,432,0 chrV 289088 . G T 3966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.760;DP=179;Dels=0.00;FS=3.021;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;MQRankSum=0.738;QD=22.16;ReadPosRankSum=0.959;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3966,435,0 chrV 289221 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=174;Dels=0.00;FS=2.575;HaplotypeScore=15.8757;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=1.908;QD=18.58;ReadPosRankSum=2.937;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3267,372,0 chrV 289706 . T C 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.728;DP=181;Dels=0.00;FS=6.074;HaplotypeScore=11.4416;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;MQRankSum=1.472;QD=13.97;ReadPosRankSum=2.895;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:3,178:181:99:2561,300,0 chrV 289772 . C T 4136.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=21.10;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4136,453,0 chrV 289889 . G A 1092 filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.8025;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=7;QD=9.58;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,111:114:99:1125,123,0 chrV 289908 . A G 836 filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=19.99;MQ0=6;QD=7.89;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:96:869,96,0 chrV 289958 . C T 2353 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=6;QD=18.67;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2386,261,0 chrV 290192 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.6839;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=3;QD=22.74;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3366,366,0 chrV 290352 . T C 3421.01 filter AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=6;QD=21.25;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3421,387,0 chrV 290434 . G A 4239.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.9109;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.81;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4239,483,0 chrV 290513 . T C 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=160;Dels=0.00;FS=2.796;HaplotypeScore=7.3763;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.822;QD=22.06;ReadPosRankSum=2.388;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3530,380,0 chrV 290805 . G A 3066 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3099,342,0 chrV 291235 . G A 6407.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.42;SB=-2.831e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:6407,691,0 chrV 291268 . C A 6076.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=13.3214;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.46;SB=-2.983e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:6076,672,0 chrV 291339 . A G 6246.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=13.3765;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.39;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:6246,708,0 chrV 291478 . A G 4755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.505;QD=21.32;ReadPosRankSum=1.685;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:4755,546,0 chrV 291807 . T A 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=138;Dels=0.00;FS=11.426;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.102;QD=22.17;ReadPosRankSum=2.832;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3093,336,0 chrV 291988 . A G 2596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=118;Dels=0.00;FS=9.259;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.491;QD=22.00;ReadPosRankSum=2.906;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:3,114:118:99:2629,291,0 chrV 292045 . C T 2542 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2575,276,0 chrV 292512 . A G 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.480;QD=21.44;ReadPosRankSum=1.690;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3538,411,0 chrV 292816 . G A 2505 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.12;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2538,282,0 chrV 293229 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.29;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3263,351,0 chrV 293301 . G A 3718.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3718,399,0 chrV 293965 . A C 3114 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.34;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3147,366,0 chrV 293991 . G C 3001 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=18.87;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3034,351,0 chrV 294027 . A G 4068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=205;Dels=0.00;FS=6.128;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.175;QD=19.84;ReadPosRankSum=2.425;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:4068,480,0 chrV 294104 . C T 3648.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.5034;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=19.20;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3648,417,0 chrV 294112 . A G 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=191;Dels=0.00;FS=7.482;HaplotypeScore=8.7506;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.392;QD=18.93;ReadPosRankSum=2.372;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3616,408,0 chrV 294185 . C G 4805.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.3579;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.45;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4805,540,0 chrV 294460 . G A 3757.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.93;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3757,405,0 chrV 294714 . T G 2310 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.33;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2343,264,0 chrV 294872 . T C 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.334;QD=19.39;ReadPosRankSum=1.637;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2166,243,0 chrV 295241 . C T 1759 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=14.1873;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=17.95;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1792,195,0 chrV 295268 . T A 1902 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.13;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1935,219,0 chrV 295407 . A G 3013 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.49;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3046,357,0 chrV 295850 . G A 4673.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.5714;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.47;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4673,510,0 chrV 296063 . A T 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=160;Dels=0.00;FS=7.599;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.361;QD=22.72;ReadPosRankSum=2.357;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3635,405,0 chrV 296453 . C T 2926 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.41;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2959,330,0 chrV 296561 . A G 2875 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.83;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2908,330,0 chrV 296564 . T C 2734 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=18.35;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2767,324,0 chrV 296669 . A G 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=177;Dels=0.00;FS=3.516;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-1.091;QD=21.63;ReadPosRankSum=1.712;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:1,172:177:99:3829,438,0 chrV 296675 . C T 3888.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.84;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3888,432,0 chrV 296717 . A G 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-1.287;QD=19.32;ReadPosRankSum=0.994;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3086,360,0 chrV 296867 . T C 4302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=200;Dels=0.00;FS=3.031;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=1.046;QD=21.51;ReadPosRankSum=2.425;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:2,194:200:99:4302,492,0 chrV 297170 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.68;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3254,354,0 chrV 297515 . G A 4019.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.72;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4019,435,0 chrV 297527 . G C 3623.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=20.24;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3623,411,0 chrV 297816 . G A 2750 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.83;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2783,312,0 chrV 297869 . T C 1570 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.62;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1603,180,0 chrV 298006 . T C 1411 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=16.60;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1444,174,0 chrV 298190 . A G 1571 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1604,180,0 chrV 298538 . T C 2848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.8077;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.279;QD=22.97;ReadPosRankSum=1.676;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2881,318,0 chrV 298743 . A G 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=136;Dels=0.00;FS=2.937;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.375;QD=22.01;ReadPosRankSum=0.246;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3027,348,0 chrV 298831 . A G 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=137;Dels=0.00;FS=8.618;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.486;QD=21.45;ReadPosRankSum=2.413;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:2,132:137:99:2971,339,0 chrV 299183 . G T 4083.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.9014;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=19.92;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4083,453,0 chrV 299186 . C T 3909.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=19.55;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3909,438,0 chrV 299219 . C T 3038 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=18.30;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,162:166:99:3071,342,0 chrV 299237 . G A 2650 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=16.77;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2683,297,0 chrV 299795 . T C 4506.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.6979;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=20.96;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4506,519,0 chrV 299873 . A C 2818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.616;DP=146;Dels=0.00;FS=5.756;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.546;QD=19.30;ReadPosRankSum=2.923;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:3,141:146:99:2851,324,0 chrV 300056 . T A 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.160;QD=22.78;ReadPosRankSum=2.193;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2653,288,0 chrV 300738 . G A 5257.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=16.5153;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.36;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5257,606,0 chrV 300974 . C T 5168.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.47;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:5168,570,0 chrV 301091 . G A 3958.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.0176;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.36;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3958,441,0 chrV 301720 . G C 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.044;DP=119;Dels=0.00;FS=3.200;HaplotypeScore=8.4704;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;MQRankSum=0.962;QD=21.63;ReadPosRankSum=1.051;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2607,291,0 chrV 301830 . G C 2320 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.31;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2353,264,0 chrV 301864 . C T 2383 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.54;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2416,264,0 chrV 301867 . C A 2422 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=21.06;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2455,270,0 chrV 301899 . C T 2338 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.33;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2371,255,0 chrV 301990 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.42;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3272,366,0 chrV 302509 . T C 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.177;DP=162;Dels=0.00;FS=6.605;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.008;QD=22.79;ReadPosRankSum=2.389;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3692,426,0 chrV 302655 . T C 4410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=184;Dels=0.00;FS=6.083;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.039;QD=23.97;ReadPosRankSum=2.918;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:3,180:184:99:4410,486,0 chrV 302863 . C A 5417.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.86;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5417,588,0 chrV 303052 . A C 5172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.971;DP=244;Dels=0.00;FS=5.901;HaplotypeScore=19.0078;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.701;QD=21.20;ReadPosRankSum=2.963;SB=-2.864e+03 GT:AD:DP:GQ:PL 1/1:3,239:244:99:5172,591,0 chrV 303277 . T A 3356.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=10.5973;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.79;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3356,363,0 chrV 303423 . A T 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=120;Dels=0.00;FS=6.098;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=0.975;QD=19.40;ReadPosRankSum=2.068;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2361,252,0 chrV 303424 . A T 2308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-1.532;QD=19.07;ReadPosRankSum=1.646;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2341,252,0 chrV 303521 . T C 2321 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=16.1218;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=19.18;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2354,279,0 chrV 304049 . C T 4091.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4091,444,0 chrV 304224 . T C 4470.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=16.3397;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.39;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4470,498,0 chrV 304272 . T C 4327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.7358;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=1.648;QD=20.90;ReadPosRankSum=1.648;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:1,204:207:99:4327,510,0 chrV 304383 . G A 4982.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.79;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4982,540,0 chrV 304530 . A G 3727.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.72;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3727,426,0 chrV 304533 . T C 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=191;Dels=0.00;FS=6.370;HaplotypeScore=4.3148;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-1.048;QD=20.48;ReadPosRankSum=2.424;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3911,441,0 chrV 304839 . C T 3372.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.2099;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=17.84;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3372,378,0 chrV 304884 . C T 3803.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=16.8557;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.13;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:3803,429,0 chrV 304936 . C T 4266.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.01;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4266,465,0 chrV 304998 . C T 3483.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.3474;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.50;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3483,381,0 chrV 305019 . T C 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.9171;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.987;QD=21.40;ReadPosRankSum=1.712;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3723,420,0 chrV 305715 . C A 51.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.420;DP=90;Dels=0.00;FS=10.630;HaplotypeScore=19.8169;MLEAC=1;MLEAF=0.500;MQ=47.48;MQ0=0;MQRankSum=-0.106;QD=0.57;ReadPosRankSum=-2.122;SB=-2.140e+02 GT:AD:DP:GQ:PL 0/1:63,27:90:81:81,0,279 chrV 305720 . C A 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;DP=89;Dels=0.00;FS=62.259;HaplotypeScore=22.3061;MLEAC=1;MLEAF=0.500;MQ=48.29;MQ0=0;MQRankSum=0.438;QD=0.36;ReadPosRankSum=-0.631;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,12:89:62:62,0,326 chrV 305860 . T C 1162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;MQRankSum=-0.188;QD=19.69;ReadPosRankSum=2.367;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1195,138,0 chrV 305933 . T C 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=102.1996;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=-1.732;QD=19.03;ReadPosRankSum=1.701;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2145,249,0 chrV 306002 . A G 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=122;Dels=0.00;FS=7.626;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=1.220;QD=19.93;ReadPosRankSum=2.409;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2465,279,0 chrV 306017 . C A 2697 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.3961;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=21.58;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2730,294,0 chrV 306386 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.83;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2887,321,0 chrV 306610 . A G 2137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=107;Dels=0.00;FS=6.311;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.806;QD=19.97;ReadPosRankSum=2.381;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2170,255,0 chrV 306738 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.54;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3235,348,0 chrV 307315 . C T 1988 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.85;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:2021,222,0 chrV 307541 . C T 3115 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=24.34;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3148,339,0 chrV 307607 . C T 2879 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=19.99;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2912,324,0 chrV 307619 . C T 2788 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=19.36;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2821,309,0 chrV 308135 . G A 2463 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.87;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2496,273,0 chrV 308152 . C T 2490 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.23;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2523,267,0 chrV 308205 . G T 2356 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=21.81;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2389,264,0 chrV 308434 . C T 3585.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.22;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3585,384,0 chrV 308551 . A G 2542 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.11;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2575,303,0 chrV 308710 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.9786;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.50;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2871,318,0 chrV 308835 . T C 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.690;DP=160;Dels=0.00;FS=5.500;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=-0.551;QD=22.14;ReadPosRankSum=2.956;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:3,156:160:99:3542,411,0 chrV 308891 . A G 4362.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.97;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4362,489,0 chrV 309004 . G A 3221.02 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.8769;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=19.17;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3254,360,0 chrV 309040 . A G 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;MQRankSum=0.342;QD=15.79;ReadPosRankSum=1.712;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:2765,321,0 chrV 309130 . C G 3788.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.52;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3788,444,0 chrV 309170 . A G 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=186;Dels=0.00;FS=2.992;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-1.916;QD=20.08;ReadPosRankSum=2.396;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:2,182:186:99:3735,432,0 chrV 309310 . T C 5171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.566;QD=22.48;ReadPosRankSum=1.702;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5171,600,0 chrV 310099 . T A 3295.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.59;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3295,354,0 chrV 310165 . C T 2622 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.17;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2655,288,0 chrV 310175 . C T 2665 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.19;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2698,294,0 chrV 310493 . A G 4601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=203;Dels=0.00;FS=2.948;HaplotypeScore=19.1410;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.115;QD=22.67;ReadPosRankSum=2.413;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:4601,522,0 chrV 310540 . A G 4302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.260;QD=21.73;ReadPosRankSum=1.715;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4302,486,0 chrV 310796 . A G 5151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=21.0656;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.077;QD=22.30;ReadPosRankSum=1.671;SB=-2.789e+03 GT:AD:DP:GQ:PL 1/1:1,225:231:99:5151,582,0 chrV 310837 . C T 5680.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.57;SB=-3.104e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5680,618,0 chrV 311266 . A C 6341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=275;Dels=0.00;FS=2.765;HaplotypeScore=18.1593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.130;QD=23.06;ReadPosRankSum=2.369;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:2,273:275:99:6341,711,0 chrV 311316 . A G 6681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.179;DP=305;Dels=0.00;FS=8.979;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.643;QD=21.90;ReadPosRankSum=3.398;SB=-3.424e+03 GT:AD:DP:GQ:PL 1/1:4,298:305:99:6681,774,0 chrV 311515 . T C 4603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=222;Dels=0.00;FS=5.055;HaplotypeScore=12.6887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.666;QD=20.73;ReadPosRankSum=1.701;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:4603,510,0 chrV 311837 . A G 3473.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=21.05;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3473,381,0 chrV 311842 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.92;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3347,372,0 chrV 311969 . A C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=157;Dels=0.00;FS=10.089;HaplotypeScore=11.5425;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.253;QD=20.59;ReadPosRankSum=2.916;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:3,152:157:99:3265,366,0 chrV 312007 . T C 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;MQRankSum=-0.148;QD=15.59;ReadPosRankSum=1.690;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:2589,297,0 chrV 312017 . T C 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.128;DP=174;Dels=0.00;FS=5.255;HaplotypeScore=16.3840;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;MQRankSum=-0.949;QD=15.74;ReadPosRankSum=3.339;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:4,170:174:99:2771,315,0 chrV 312058 . T C 3201 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.8334;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=17.30;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3234,366,0 chrV 312115 . G A 2646 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.7347;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=20.35;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2679,288,0 chrV 312117 . T A 2682 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.364;HaplotypeScore=3.4742;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=0.595;QD=20.79;ReadPosRankSum=1.651;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2715,297,0 chrV 312125 . C T 2749 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8187;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.36;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2782,306,0 chrV 312176 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.7086;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.33;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3268,357,0 chrV 312427 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.52;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2950,324,0 chrV 312465 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.889;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-1.513;QD=23.51;ReadPosRankSum=1.708;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3338,375,0 chrV 312495 . A T 2827 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=20.64;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2860,312,0 chrV 312496 . A G 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=4.175;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=-1.375;QD=20.11;ReadPosRankSum=1.656;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2768,315,0 chrV 312677 . G A 5305.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=25.38;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5305,576,0 chrV 312726 . C A 4728.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=21.79;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4728,513,0 chrV 312731 . G A 4764.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.4585;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=21.46;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:1,218:222:99:4764,513,0 chrV 312786 . A G 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=193;Dels=0.00;FS=6.046;HaplotypeScore=11.0676;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-1.500;QD=19.21;ReadPosRankSum=2.963;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:3,188:193:99:3708,414,0 chrV 312810 . C T 4054.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=20.47;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4054,435,0 chrV 312834 . C T 4876.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.4249;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.37;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4876,531,0 chrV 312966 . G C 5628.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=16.9688;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=21.24;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:0,262:265:99:5628,636,0 chrV 313070 . G A 6137.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=16.0974;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.97;SB=-3.099e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:6137,661,0 chrV 313206 . C A 7406.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=18.7529;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.05;SB=-3.905e+03 GT:AD:DP:GQ:PL 1/1:0,307:308:99:7406,796,0 chrV 313344 . G C 4097.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.23;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4097,474,0 chrV 313487 . T A 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=4.745;HaplotypeScore=9.4093;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.697;QD=22.20;ReadPosRankSum=1.669;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3641,396,0 chrV 313556 . A G 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.1436;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=1.109;QD=20.37;ReadPosRankSum=1.707;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2865,324,0 chrV 313588 . A G 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=143;Dels=0.00;FS=3.005;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.266;QD=20.99;ReadPosRankSum=2.364;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3035,339,0 chrV 313619 . T C 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=133;Dels=0.00;FS=6.667;HaplotypeScore=8.1382;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.767;QD=20.56;ReadPosRankSum=2.357;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2768,312,0 chrV 313660 . C T 2807 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.46;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2840,315,0 chrV 313793 . A T 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.524;DP=115;Dels=0.00;FS=2.904;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=0.695;QD=18.28;ReadPosRankSum=-0.439;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2135,231,0 chrV 313810 . A G 2433 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=19.94;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2466,285,0 chrV 313858 . A C 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=129;Dels=0.00;FS=3.112;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=0.765;QD=22.46;ReadPosRankSum=1.329;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2930,311,0 chrV 313914 . T C 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=-1.453;QD=22.13;ReadPosRankSum=1.704;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2822,312,0 chrV 313933 . A G 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=120;Dels=0.00;FS=9.822;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=0.134;QD=18.89;ReadPosRankSum=2.942;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2300,264,0 chrV 313937 . A G 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=119;Dels=0.00;FS=9.836;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;MQRankSum=0.000;QD=19.80;ReadPosRankSum=2.889;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2389,270,0 chrV 313976 . T C 1915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=6.8926;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;MQRankSum=0.247;QD=16.51;ReadPosRankSum=1.701;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,111:115:99:1948,222,0 chrV 313993 . C T 2396 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=18.29;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2429,261,0 chrV 314032 . A C 2496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=4.097;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=-0.648;QD=19.05;ReadPosRankSum=1.706;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2529,282,0 chrV 314046 . A G 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.550;DP=136;Dels=0.00;FS=7.208;HaplotypeScore=119.0115;MLEAC=1;MLEAF=0.500;MQ=48.94;MQ0=0;MQRankSum=0.651;QD=0.29;ReadPosRankSum=-4.734;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:125,10:136:69:69,0,99 chrV 314047 . A G 64.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.979;DP=138;Dels=0.00;FS=9.228;HaplotypeScore=120.5889;MLEAC=1;MLEAF=0.500;MQ=49.12;MQ0=0;MQRankSum=0.527;QD=0.46;ReadPosRankSum=5.220;SB=-1.413e+03 GT:AD:DP:GQ:PL 0/1:11,125:138:70:94,0,70 chrV 314099 . A T 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.722;HaplotypeScore=126.1975;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=1.607;QD=18.71;ReadPosRankSum=1.707;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2634,285,0 chrV 314127 . T C 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-1.405;QD=20.09;ReadPosRankSum=1.694;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3617,411,0 chrV 314160 . C T 4129.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.01;FS=0.000;HaplotypeScore=10.2599;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=21.85;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4129,456,0 chrV 314589 . C T 3901.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8181;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.66;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3901,426,0 chrV 314947 . C G 3228.29 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3262,366,0 chrV 314979 . C T 4229.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.36;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4229,468,0 chrV 315077 . T C 5688.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5688,642,0 chrV 315278 . C T 4968.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=13.7405;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.32;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,230:233:99:4968,540,0 chrV 315416 . C T 4584.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4584,498,0 chrV 315976 . T A 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=129;Dels=0.00;FS=6.401;HaplotypeScore=11.8913;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-0.886;QD=22.59;ReadPosRankSum=2.412;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2947,318,0 chrV 316010 . G A 2430 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=22.29;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2463,273,0 chrV 316022 . A G 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=3.771;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.680;QD=19.96;ReadPosRankSum=1.670;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2269,258,0 chrV 316219 . A G 1805 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.23;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1838,210,0 chrV 316222 . C T 1906 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.85;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1939,210,0 chrV 316678 . G A 1865 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=16.65;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1898,213,0 chrV 316681 . G C 1683 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=15.44;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1716,198,0 chrV 317040 . A G 3858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=163;Dels=0.00;FS=3.371;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.052;QD=23.67;ReadPosRankSum=1.711;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3858,435,0 chrV 317203 . G A 4609.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.6432;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:4609,501,0 chrV 317359 . A G 3554.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.11;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3554,411,0 chrV 317416 . G A 4551.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.5272;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.99;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4551,489,0 chrV 317740 . G C 3660.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.03;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,169:174:99:3660,429,0 chrV 317773 . G A 3603.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.1748;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.83;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3603,402,0 chrV 317776 . A C 3610.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3756;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.99;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3610,405,0 chrV 318309 . T C 3110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=148;Dels=0.00;FS=3.650;HaplotypeScore=13.6254;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.210;QD=21.01;ReadPosRankSum=1.708;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3143,360,0 chrV 318532 . G T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.56;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3609,396,0 chrV 318646 . A G 1800 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.18;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1833,207,0 chrV 318778 . T C 1956 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.11;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,105:108:99:1989,234,0 chrV 319971 . G A 3712.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.75;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3712,402,0 chrV 320053 . G A 3866.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.4194;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.74;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3866,423,0 chrV 320301 . T C 4061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.722;QD=21.15;ReadPosRankSum=1.696;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4061,471,0 chrV 320500 . C T 4558.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.04;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4558,489,0 chrV 320724 . A G 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.483;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=16.6146;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.707;QD=20.73;ReadPosRankSum=1.159;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:2976,333,0 chrV 320982 . T A 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=3.252;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.023;QD=24.12;ReadPosRankSum=1.662;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3570,387,0 chrV 321044 . C T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.70;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3310,360,0 chrV 321086 . G A 2889 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.68;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2922,321,0 chrV 321111 . C T 2724 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.33;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2757,300,0 chrV 321201 . G A 3835.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=16.4733;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.83;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3835,432,0 chrV 321401 . T C 3567.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.43;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3567,408,0 chrV 321483 . T C 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=137;Dels=0.00;FS=3.450;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.399;QD=22.33;ReadPosRankSum=1.706;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3092,363,0 chrV 321624 . G T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.63;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3426,372,0 chrV 321779 . A G 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=137;Dels=0.00;FS=2.975;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=0.673;QD=20.36;ReadPosRankSum=2.324;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2823,315,0 chrV 321783 . C T 2951 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=21.23;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2984,324,0 chrV 321832 . G A 2750 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.64;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2783,309,0 chrV 321873 . T C 2681 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.5470;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.62;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,125:130:99:2714,315,0 chrV 321889 . T C 2486 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.05;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2519,285,0 chrV 321901 . G T 2624 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=19.58;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2657,297,0 chrV 321936 . T A 2546 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=17.93;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2579,291,0 chrV 321958 . T C 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.492;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;MQRankSum=-1.732;QD=17.88;ReadPosRankSum=0.000;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2357,248,0 chrV 321977 . A G 2243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;MQRankSum=-0.549;QD=17.94;ReadPosRankSum=1.676;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2276,261,0 chrV 321991 . G A 2175 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=17.40;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:2208,249,0 chrV 322202 . C T 2681 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=20.95;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2714,306,0 chrV 322210 . A T 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=-1.732;QD=21.52;ReadPosRankSum=1.704;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2659,288,0 chrV 322554 . G C 2669 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=16.9428;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2702,309,0 chrV 322875 . T C 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=151;Dels=0.00;FS=3.035;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.124;QD=21.71;ReadPosRankSum=2.417;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3278,369,0 chrV 323837 . A G 5019.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.1835;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.31;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:5019,561,0 chrV 323885 . G A 4947.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.4851;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.08;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4947,549,0 chrV 324121 . A G 1769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-1.279;QD=20.81;ReadPosRankSum=1.691;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1802,201,0 chrV 324122 . C G 1744 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.76;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1777,201,0 chrV 324202 . A T 1312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=3.452;HaplotypeScore=7.6285;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.621;QD=21.16;ReadPosRankSum=0.894;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1345,144,0 chrV 325001 . C G 4372.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.6903;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.19;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:4372,510,0 chrV 325346 . A G 6094.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.80;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,292:293:99:6094,687,0 chrV 325661 . T C 3600.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3600,405,0 chrV 325941 . T A 1956 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1989,213,0 chrV 326507 . A G 3700.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=21.1737;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.02;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3700,429,0 chrV 326711 . T C 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=189;Dels=0.00;FS=3.033;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.398;QD=22.01;ReadPosRankSum=0.542;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4160,452,0 chrV 326990 . C T 3123 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.02;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3156,345,0 chrV 326999 . C T 3010 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.20;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3043,327,0 chrV 327059 . A G 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.5316;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.739;QD=19.84;ReadPosRankSum=1.711;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3274,369,0 chrV 327269 . C T 5710.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=18.1387;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.30;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5710,619,0 chrV 327363 . A C 4419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.814;DP=213;Dels=0.00;FS=12.248;HaplotypeScore=17.4951;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.073;QD=20.75;ReadPosRankSum=3.717;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:5,205:213:99:4419,492,0 chrV 327452 . C T 4786.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.2263;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.90;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:4786,525,0 chrV 327970 . G A 2290 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.91;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2323,255,0 chrV 328157 . G A 1896 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.84;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1929,213,0 chrV 328176 . C G 1787 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.54;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1820,207,0 chrV 328266 . A T 1728 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.585;DP=98;Dels=0.03;FS=8.670;HaplotypeScore=23.2230;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;MQRankSum=-0.139;QD=17.63;ReadPosRankSum=2.196;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:4,91:95:99:1761,192,0 chrV 328271 . G A 1518 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=22.4321;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;MQRankSum=0.685;QD=17.45;ReadPosRankSum=0.604;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1551,171,0 chrV 328273 . C G 1391 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.02;FS=0.000;HaplotypeScore=22.4321;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=16.17;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1424,162,0 chrV 328773 . A G 5795.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=10.5521;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.55;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5795,639,0 chrV 328850 . G A 6033.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=18.5704;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.85;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:0,261:264:99:6033,657,0 chrV 329070 . G A 7007.01 PASS AC=2;AF=1.00;AN=2;DP=342;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.49;SB=-3.837e+03 GT:AD:DP:GQ:PL 1/1:0,342:342:99:7007,786,0 chrV 329079 . T C 6933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=353;Dels=0.00;FS=7.562;HaplotypeScore=13.9923;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.123;QD=19.64;ReadPosRankSum=2.407;SB=-3.442e+03 GT:AD:DP:GQ:PL 1/1:2,347:353:99:6933,777,0 chrV 329202 . A G 6485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=337;Dels=0.00;FS=2.549;HaplotypeScore=23.5260;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=2.314;QD=19.24;ReadPosRankSum=2.949;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:3,333:337:99:6485,747,0 chrV 329469 . T C 4219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=189;Dels=0.00;FS=3.574;HaplotypeScore=8.7165;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.852;QD=22.32;ReadPosRankSum=1.714;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4219,477,0 chrV 329730 . C T 4802.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4802,534,0 chrV 330290 . G A 2722 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.31;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2755,303,0 chrV 330361 . T C 2327 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.16;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2360,267,0 chrV 330553 . A G 2626 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=117.7821;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=19.60;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2659,300,0 chrV 332219 . T C 3881.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.24;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3881,444,0 chrV 332460 . C T 3819.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3300;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.87;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3819,414,0 chrV 332482 . G A 3848.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.18;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3848,423,0 chrV 333114 . A G 1699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=83;Dels=0.00;FS=3.064;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=1.007;QD=20.47;ReadPosRankSum=2.390;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:2,80:83:99:1732,204,0 chrV 333160 . A T 1985 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.02;FS=0.000;HaplotypeScore=10.0981;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.05;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2018,225,0 chrV 333164 . T C 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.696;DP=114;Dels=0.00;FS=2.363;HaplotypeScore=8.9146;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.303;QD=19.12;ReadPosRankSum=2.603;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:4,109:114:99:2213,255,0 chrV 333251 . G A 3410.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=25.45;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3410,366,0 chrV 333299 . G T 2120 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=21.41;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2153,234,0 chrV 333308 . C T 1934 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=19.34;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1967,216,0 chrV 333317 . C G 1752 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=17.52;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1785,201,0 chrV 333398 . T C 4271.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.6185;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.04;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4271,503,0 chrV 333669 . C G 4487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.4460;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.331;QD=20.58;ReadPosRankSum=1.508;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:1,215:218:99:4487,504,0 chrV 333688 . A G 4093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=205;Dels=0.00;FS=5.933;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.345;QD=19.97;ReadPosRankSum=2.877;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:3,201:205:99:4093,480,0 chrV 333734 . C T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.0451;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.46;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3796,423,0 chrV 334031 . A G 4346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=187;Dels=0.00;FS=6.377;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.793;QD=23.24;ReadPosRankSum=0.532;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4346,480,0 chrV 334115 . A G 5657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=253;Dels=0.00;FS=3.462;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.993;QD=22.36;ReadPosRankSum=1.691;SB=-2.972e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:5657,660,0 chrV 334175 . A C 4850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=220;Dels=0.00;FS=3.151;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.767;QD=22.05;ReadPosRankSum=1.685;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:4850,549,0 chrV 334216 . C T 4710.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.0968;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.31;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4710,519,0 chrV 334274 . T G 5028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=255;Dels=0.00;FS=3.023;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.672;QD=19.72;ReadPosRankSum=2.343;SB=-3.072e+03 GT:AD:DP:GQ:PL 1/1:2,252:255:99:5028,579,0 chrV 334331 . T C 6478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=298;Dels=0.00;FS=5.993;HaplotypeScore=18.1305;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.488;QD=21.74;ReadPosRankSum=2.949;SB=-3.391e+03 GT:AD:DP:GQ:PL 1/1:3,293:298:99:6478,741,0 chrV 334391 . C T 7731.01 PASS AC=2;AF=1.00;AN=2;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=20.0226;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.64;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:0,326:327:99:7731,835,0 chrV 334730 . G A 8434.01 filter AC=2;AF=1.00;AN=2;DP=396;Dels=0.00;FS=0.000;HaplotypeScore=37.3897;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.30;SB=-4.188e+03 GT:AD:DP:GQ:PL 1/1:0,396:396:99:8434,951,0 chrV 334790 . G A 6901.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=27.7157;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.12;SB=-3.759e+03 GT:AD:DP:GQ:PL 1/1:0,311:312:99:6901,748,0 chrV 334853 . T C 7054.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=8.1573;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.87;SB=-3.669e+03 GT:AD:DP:GQ:PL 1/1:0,338:338:99:7054,786,0 chrV 334871 . A G 6493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=332;Dels=0.00;FS=2.848;HaplotypeScore=13.1445;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.241;QD=19.56;ReadPosRankSum=2.435;SB=-3.289e+03 GT:AD:DP:GQ:PL 1/1:2,329:332:99:6493,738,0 chrV 335278 . G C 5618.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=14.8964;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.96;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,265:268:99:5618,665,0 chrV 335310 . C G 5593.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=18.1533;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.51;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,255:260:99:5593,633,0 chrV 335812 . T C 6489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=288;Dels=0.00;FS=2.570;HaplotypeScore=15.2062;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.563;QD=22.53;ReadPosRankSum=2.927;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:3,285:288:99:6489,738,0 chrV 335874 . C T 6325.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=12.0300;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.35;SB=-3.366e+03 GT:AD:DP:GQ:PL 1/1:0,282:283:99:6325,699,0 chrV 336186 . A G 4682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=244;Dels=0.00;FS=6.258;HaplotypeScore=24.2730;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.046;QD=19.19;ReadPosRankSum=2.399;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:2,241:244:99:4682,563,0 chrV 336237 . G A 5843.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=24.4724;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.22;SB=-3.190e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:5843,645,0 chrV 336295 . T C 6070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=307;Dels=0.00;FS=10.342;HaplotypeScore=28.9220;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.376;QD=19.77;ReadPosRankSum=2.970;SB=-3.160e+03 GT:AD:DP:GQ:PL 1/1:3,301:307:99:6070,678,0 chrV 336549 . C T 5502.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=15.9036;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.16;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:1,256:260:99:5502,606,0 chrV 336702 . A G 6168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=274;Dels=0.00;FS=10.090;HaplotypeScore=16.2718;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.372;QD=22.51;ReadPosRankSum=2.959;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:3,269:274:99:6168,690,0 chrV 336939 . T C 4558.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=14.8659;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.07;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:4558,522,0 chrV 337281 . G C 2441 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.22;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2474,285,0 chrV 337672 . T C 1990 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.6978;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=20.73;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2023,231,0 chrV 338308 . A G 3407.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.6575;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.99;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3407,387,0 chrV 338516 . C A 4397.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.29;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4397,477,0 chrV 338773 . A T 6356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=281;Dels=0.00;FS=3.518;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.449;QD=22.62;ReadPosRankSum=1.695;SB=-3.190e+03 GT:AD:DP:GQ:PL 1/1:1,280:281:99:6356,702,0 chrV 339244 . A G 4231.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.92;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4231,486,0 chrV 339301 . A G 4502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=203;Dels=0.00;FS=6.129;HaplotypeScore=12.0604;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.504;QD=22.18;ReadPosRankSum=2.413;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:4502,519,0 chrV 339355 . T C 4069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.175;QD=21.42;ReadPosRankSum=0.873;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4069,477,0 chrV 339555 . C T 2438 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;QD=23.44;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2471,264,0 chrV 339635 . T G 1674 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.67;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1707,195,0 chrV 339855 . T C 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.213;QD=24.37;ReadPosRankSum=1.702;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2836,324,0 chrV 339960 . A G 2735 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.86;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2768,309,0 chrV 340292 . T C 5622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.323;DP=254;Dels=0.00;FS=9.002;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.937;QD=22.13;ReadPosRankSum=3.385;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:4,248:254:99:5622,648,0 chrV 340779 . G A 3370.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3370,387,0 chrV 341106 . G A 4890.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=25.5807;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.64;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4890,555,0 chrV 341688 . A G 4549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=206;Dels=0.00;FS=3.751;HaplotypeScore=10.8021;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.511;QD=22.08;ReadPosRankSum=1.698;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:1,203:206:99:4549,531,0 chrV 342057 . C T 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.265;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.2286;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.479;QD=21.87;ReadPosRankSum=-1.070;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3893,407,0 chrV 342686 . A G 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.712;DP=156;Dels=0.00;FS=15.776;HaplotypeScore=13.9321;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-0.228;QD=19.80;ReadPosRankSum=3.742;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:5,150:156:99:3122,357,0 chrV 342731 . C A 2721 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=21.6106;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.72;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2754,306,0 chrV 342762 . A T 2915 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.9179;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.32;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2948,315,0 chrV 342869 . T C 4576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.4020;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-1.292;QD=24.21;ReadPosRankSum=1.714;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4576,519,0 chrV 343116 . C T 4301.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.50;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4301,459,0 chrV 343118 . G A 4123.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=22.65;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4123,456,0 chrV 343350 . C T 2650 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.08;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2683,294,0 chrV 343584 . T G 3497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7229;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.520;QD=23.63;ReadPosRankSum=1.709;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3497,396,0 chrV 343865 . C T 2873 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2906,324,0 chrV 344031 . T C 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=16.9236;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.584;QD=20.73;ReadPosRankSum=1.713;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3772,441,0 chrV 344076 . G A 4017.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.83;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4017,438,0 chrV 344574 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.0929;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3381,372,0 chrV 345204 . G A 2494 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.88;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2527,285,0 chrV 345228 . T A 2449 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.78;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2482,270,0 chrV 345278 . A G 2022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=15.0854;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.017;QD=20.02;ReadPosRankSum=1.664;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2055,234,0 chrV 345729 . C T 2824 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.2748;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;QD=19.08;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2857,309,0 chrV 345732 . C T 2746 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.4712;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=17.95;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2779,309,0 chrV 345740 . G A 2695 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.6971;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=17.85;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2728,294,0 chrV 345774 . A G 2172 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;QD=14.58;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2205,249,0 chrV 345777 . C T 2271 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=15.45;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2304,249,0 chrV 346317 . C T 4138.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.49;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4138,453,0 chrV 346332 . A G 4155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=195;Dels=0.00;FS=7.948;HaplotypeScore=8.5346;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.652;QD=21.31;ReadPosRankSum=2.412;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4155,459,0 chrV 346425 . A G 4438.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.99;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4438,513,0 chrV 346614 . G A 4691.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.57;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4691,513,0 chrV 346707 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=19.89;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3659,405,0 chrV 346966 . C T 4143.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.92;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4143,447,0 chrV 346971 . T A 4215.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.56;SB=-2.762e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4215,453,0 chrV 347145 . C G 3934.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.61;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3934,450,0 chrV 347202 . T A 4018.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.50;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4018,435,0 chrV 347283 . G A 2973 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=22.9784;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.50;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3006,336,0 chrV 347367 . T C 4255.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.38;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4255,483,0 chrV 347565 . C T 4097.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.28;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4097,441,0 chrV 347954 . A G 3690.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.9815;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.71;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3690,426,0 chrV 348010 . G C 3047 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=20.73;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3080,360,0 chrV 348013 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=155;Dels=0.00;FS=10.004;HaplotypeScore=5.1490;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-0.222;QD=20.86;ReadPosRankSum=2.863;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:3,151:155:99:3265,366,0 chrV 348050 . C G 3893.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.5950;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.27;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3893,450,0 chrV 348231 . T A 2827 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=3.878;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=-1.541;QD=22.26;ReadPosRankSum=1.705;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2860,312,0 chrV 348234 . C T 2772 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=20.69;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2805,303,0 chrV 348237 . A T 2774 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=138;Dels=0.00;FS=3.009;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=-0.828;QD=20.10;ReadPosRankSum=2.414;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2807,306,0 chrV 348378 . A C 2533 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.94;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2566,300,0 chrV 348419 . A G 2775 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.5912;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.68;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2808,315,0 chrV 348570 . A G 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=3.034;HaplotypeScore=14.3383;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.481;QD=21.70;ReadPosRankSum=2.412;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2897,330,0 chrV 348697 . G T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=6.2065;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=0.14;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:6:53,6,0 chrV 348780 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.93;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3553,399,0 chrV 348897 . A G 4850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=223;Dels=0.00;FS=9.211;HaplotypeScore=16.7490;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.046;QD=21.75;ReadPosRankSum=2.922;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:3,217:223:99:4850,561,0 chrV 349284 . C T 4669.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=9.6882;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=19.45;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:4669,531,0 chrV 349414 . G A 3688.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=17.82;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3688,405,0 chrV 349434 . C T 4492.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.6588;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.88;SB=-2.828e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4492,483,0 chrV 349710 . G A 5999.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=8.5432;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=19.67;SB=-3.220e+03 GT:AD:DP:GQ:PL 1/1:0,303:305:99:5999,666,0 chrV 349715 . T C 5827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.833;DP=314;Dels=0.00;FS=20.722;HaplotypeScore=7.2577;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=1.116;QD=18.56;ReadPosRankSum=3.808;SB=-3.127e+03 GT:AD:DP:GQ:PL 1/1:5,306:314:99:5827,657,0 chrV 350100 . A G 5085.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=5.3946;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.71;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5085,602,0 chrV 350115 . G C 5342.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=10.0996;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=18.61;SB=-3.233e+03 GT:AD:DP:GQ:PL 1/1:0,284:287:99:5342,632,0 chrV 350516 . T C 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-1.568;QD=21.99;ReadPosRankSum=1.671;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3716,423,0 chrV 350543 . G A 4406.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.59;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4406,474,0 chrV 350741 . C T 4126.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.65;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4126,450,0 chrV 350747 . T C 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-0.610;QD=19.39;ReadPosRankSum=1.683;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4072,453,0 chrV 351233 . C T 2805 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.75;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2838,306,0 chrV 351279 . A G 3419.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.43;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3419,399,0 chrV 351873 . G A 4018.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.3393;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=22.08;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4018,432,0 chrV 352270 . T C 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=157;Dels=0.00;FS=6.071;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.327;QD=19.38;ReadPosRankSum=2.889;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:3,151:157:99:3076,351,0 chrV 352273 . A G 2917 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.94;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2950,342,0 chrV 352394 . A G 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.691;QD=21.30;ReadPosRankSum=1.691;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3600,411,0 chrV 352574 . T A 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=148;Dels=0.00;FS=6.662;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.457;QD=23.55;ReadPosRankSum=2.416;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3485,384,0 chrV 352751 . A T 4204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=174;Dels=0.00;FS=4.017;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;MQRankSum=1.652;QD=24.16;ReadPosRankSum=1.712;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4204,456,0 chrV 353407 . C T 1983 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.6417;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.79;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2016,222,0 chrV 353446 . T G 2186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.745;DP=99;Dels=0.00;FS=5.928;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=1.480;QD=22.08;ReadPosRankSum=2.766;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:3,96:99:99:2219,255,0 chrV 353499 . G T 2935 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.58;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2968,321,0 chrV 353561 . G A 2647 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=23.02;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2680,291,0 chrV 353583 . C A 2554 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.76;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2587,288,0 chrV 353654 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.59;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2879,315,0 chrV 353683 . G A 3122 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.0679;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.13;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3155,360,0 chrV 353807 . T C 2268 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.60;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2301,264,0 chrV 353817 . G A 2337 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.32;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2370,258,0 chrV 353854 . C A 2776 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.1222;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.83;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2809,318,0 chrV 353975 . T C 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=122;Dels=0.00;FS=3.155;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.306;QD=22.25;ReadPosRankSum=1.675;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2748,306,0 chrV 354038 . A G 3277.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.8759;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.27;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3277,363,0 chrV 354103 . T C 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=3.305;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=1.100;QD=21.23;ReadPosRankSum=1.682;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2942,336,0 chrV 354265 . C T 2455 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.0520;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=23.83;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2488,276,0 chrV 354297 . A T 2094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;MQRankSum=-1.309;QD=23.27;ReadPosRankSum=1.694;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2127,231,0 chrV 354325 . A G 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=40.16;MQ0=0;MQRankSum=-0.949;QD=19.01;ReadPosRankSum=1.691;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1630,186,0 chrV 354752 . A C 492 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=32.76;MQ0=0;QD=6.47;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:60:525,60,0 chrV 354800 . G A 2130 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.26;MQ0=0;QD=20.29;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2163,240,0 chrV 354813 . G C 2294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.299;DP=113;Dels=0.00;FS=2.796;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=33.97;MQ0=0;MQRankSum=0.743;QD=20.30;ReadPosRankSum=1.873;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:2,109:113:99:2327,267,0 chrV 354838 . C A 2903 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=36.52;MQ0=0;QD=21.83;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2936,336,0 chrV 354899 . T C 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=47.13;MQ0=0;MQRankSum=-0.841;QD=22.32;ReadPosRankSum=2.391;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3749,426,0 chrV 355019 . T C 2336 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=190.8622;MLEAC=2;MLEAF=1.00;MQ=36.85;MQ0=0;QD=16.57;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2369,267,0 chrV 355038 . G T 1884 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=102.8736;MLEAC=2;MLEAF=1.00;MQ=36.36;MQ0=0;QD=13.65;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1917,213,0 chrV 355275 . A G 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=111;Dels=0.03;FS=3.042;HaplotypeScore=52.7129;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=1.184;QD=16.22;ReadPosRankSum=2.403;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:2,103:108:99:1833,210,0 chrV 355503 . C T 3735.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.49;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3735,420,0 chrV 355527 . G A 4102.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.79;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4102,444,0 chrV 355825 . T G 3886.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=4.583;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.603;QD=21.35;ReadPosRankSum=1.713;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3886,444,0 chrV 355867 . T C 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.978;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.9793;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.376;QD=19.87;ReadPosRankSum=2.182;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:2,145:149:99:2993,354,0 chrV 356119 . C T 3302.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3302,357,0 chrV 356220 . A G 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=3.104;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.012;QD=23.40;ReadPosRankSum=1.708;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3300,369,0 chrV 356332 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3380,363,0 chrV 356363 . C T 2970 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.15;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3003,327,0 chrV 356423 . T C 3874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.563;QD=23.77;ReadPosRankSum=1.690;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3874,432,0 chrV 356575 . T C 3511.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.36;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3511,396,0 chrV 356665 . G A 2681 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2714,291,0 chrV 356837 . A G 4796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=4.980;HaplotypeScore=9.1750;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.191;QD=24.85;ReadPosRankSum=1.714;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4796,534,0 chrV 356891 . T C 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=162;Dels=0.00;FS=2.697;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.159;QD=22.35;ReadPosRankSum=2.359;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3621,423,0 chrV 357566 . G A 2903 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.7771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2936,330,0 chrV 357733 . C T 2756 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.36;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2789,306,0 chrV 357830 . C A 1705 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=18.6177;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=17.95;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1738,192,0 chrV 357876 . C T 1982 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.65;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2015,219,0 chrV 358004 . A G 2579 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=24.10;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2612,297,0 chrV 358073 . T A 3369.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.96;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3369,366,0 chrV 358357 . G A 9714.01 filter AC=2;AF=1.00;AN=2;DP=429;Dels=0.00;FS=0.000;HaplotypeScore=16.3407;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.64;SB=-4.464e+03 GT:AD:DP:GQ:PL 1/1:0,428:429:99:9714,1054,0 chrV 359239 . C T 3825.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.0639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3825,417,0 chrV 359292 . C T 3937.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.61;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3937,444,0 chrV 360247 . A G 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.666;QD=21.19;ReadPosRankSum=1.699;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2237,255,0 chrV 360318 . C A 2067 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2100,231,0 chrV 360460 . A T 2749 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=9.8422;MLEAC=2;MLEAF=1.00;MQ=61.01;MQ0=0;QD=23.50;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2782,312,0 chrV 360556 . A G 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=5.351;HaplotypeScore=7.7547;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;MQRankSum=-1.126;QD=23.62;ReadPosRankSum=1.617;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2891,330,0 chrV 361213 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.9839;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.78;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3972,432,0 chrV 361243 . T C 4274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.539;QD=23.23;ReadPosRankSum=1.694;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4274,492,0 chrV 361905 . G T 4456.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.5647;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.39;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4456,486,0 chrV 361960 . A G 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=170;Dels=0.00;FS=3.029;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.502;QD=21.48;ReadPosRankSum=2.377;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3652,411,0 chrV 362084 . A T 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.9491;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.785;QD=21.76;ReadPosRankSum=1.711;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3504,381,0 chrV 362194 . C T 3054 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=22.13;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3087,330,0 chrV 362205 . A G 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-1.455;QD=20.18;ReadPosRankSum=1.677;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2555,297,0 chrV 362296 . T C 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;MQRankSum=0.142;QD=17.74;ReadPosRankSum=1.710;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:2872,318,0 chrV 362305 . G A 2980 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=42.51;MQ0=0;QD=18.06;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3013,324,0 chrV 362334 . G A 1943 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=33.97;MQ0=0;QD=12.95;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:1976,219,0 chrV 362343 . G A 1858 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;QD=13.18;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1891,204,0 chrV 362344 . A T 1785 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;QD=12.66;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1818,204,0 chrV 362389 . A G 2468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.031;DP=179;Dels=0.00;FS=5.428;HaplotypeScore=6.0937;MLEAC=2;MLEAF=1.00;MQ=38.94;MQ0=0;MQRankSum=-0.662;QD=13.79;ReadPosRankSum=0.292;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:2501,291,0 chrV 362397 . G T 2821 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=14.85;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:2854,315,0 chrV 362438 . T A 4830.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=7.9917;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=21.47;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4830,525,0 chrV 362609 . C T 5539.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.01;FS=0.000;HaplotypeScore=20.3688;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;QD=21.98;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5539,624,0 chrV 362681 . T G 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=199;Dels=0.00;FS=6.822;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;MQRankSum=0.006;QD=16.06;ReadPosRankSum=2.400;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:3228,357,0 chrV 362682 . G C 3183 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=15.53;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:3216,366,0 chrV 362739 . T C 4661.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.00;SB=-2.826e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4661,522,0 chrV 362788 . G A 4112.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=23.10;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4112,468,0 chrV 362832 . C T 3487.01 SnpCluster AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=21.66;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3487,381,0 chrV 362834 . A T 3225.28 SnpCluster AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=20.03;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3258,369,0 chrV 362837 . G A 3539.01 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;QD=20.82;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3539,387,0 chrV 362962 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=4.231;HaplotypeScore=10.0747;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-0.401;QD=21.85;ReadPosRankSum=1.686;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3300,372,0 chrV 363002 . C T 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=175;Dels=0.00;FS=3.622;HaplotypeScore=9.8469;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=0.525;QD=21.54;ReadPosRankSum=1.198;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3770,398,0 chrV 363015 . C T 3557.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=20.56;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3557,405,0 chrV 363023 . T C 3498.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=20.34;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3498,396,0 chrV 363243 . T C 3699.01 filter AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=8;QD=23.41;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3699,420,0 chrV 363833 . T C 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;MQRankSum=-0.114;QD=21.04;ReadPosRankSum=1.682;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2915,342,0 chrV 364048 . T C 2917 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=18.94;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2950,336,0 chrV 364059 . T A 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=4.532;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=-0.076;QD=18.55;ReadPosRankSum=1.645;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2982,321,0 chrV 364082 . C T 2855 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=17.41;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:2888,330,0 chrV 364150 . C T 2889 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2922,318,0 chrV 364196 . G A 2662 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2695,294,0 chrV 364435 . A G 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=124;Dels=0.00;FS=3.119;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.014;QD=21.41;ReadPosRankSum=1.675;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2688,300,0 chrV 364465 . G A 2671 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.2386;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.68;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2704,300,0 chrV 364548 . A G 3648.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.97;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3648,434,0 chrV 365839 . T C 3862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=174;Dels=0.00;FS=2.921;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.079;QD=22.20;ReadPosRankSum=2.421;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:3862,441,0 chrV 365978 . C T 4554.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.0491;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4554,489,0 chrV 366285 . G A 4847.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.24;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4847,528,0 chrV 366434 . C T 2981 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.08;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3014,324,0 chrV 366524 . A T 3046 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3079,330,0 chrV 366566 . C T 2769 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.02;FS=0.000;HaplotypeScore=19.6878;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.64;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2802,300,0 chrV 366971 . C A 5911.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.33;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5911,642,0 chrV 367485 . G A 4135.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.47;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4135,468,0 chrV 367664 . G A 4614.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.08;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4614,495,0 chrV 367786 . G A 3900.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.7148;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.08;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3900,423,0 chrV 368184 . C T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3415,375,0 chrV 368706 . A G 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=155;Dels=0.00;FS=6.071;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.797;QD=22.03;ReadPosRankSum=2.915;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:3,151:155:99:3415,384,0 chrV 368771 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.08;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3347,372,0 chrV 368857 . T G 3086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=131;Dels=0.00;FS=3.037;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.811;QD=23.56;ReadPosRankSum=2.412;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3119,360,0 chrV 369110 . A G 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=153;Dels=0.00;FS=6.108;HaplotypeScore=5.9046;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.317;QD=19.63;ReadPosRankSum=2.417;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:3036,348,0 chrV 369120 . C T 2968 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.33;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3001,324,0 chrV 369437 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.3107;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.75;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2968,336,0 chrV 369472 . T G 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=150;Dels=0.00;FS=2.583;HaplotypeScore=8.1341;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.993;QD=22.76;ReadPosRankSum=2.900;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:3414,390,0 chrV 369527 . C T 2926 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.75;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2959,330,0 chrV 369538 . G A 2964 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.32;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2997,321,0 chrV 369566 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.04;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2831,312,0 chrV 369728 . C T 2877 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.96;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2910,327,0 chrV 369869 . T C 2990 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3023,345,0 chrV 370026 . G A 3640.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=24.43;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3640,393,0 chrV 370253 . G A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=22.77;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4076,456,0 chrV 370268 . A T 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=174;Dels=0.00;FS=6.011;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;MQRankSum=-0.994;QD=21.59;ReadPosRankSum=2.948;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3757,420,0 chrV 370286 . A G 3637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=172;Dels=0.00;FS=5.803;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=0.129;QD=21.15;ReadPosRankSum=2.959;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:3637,411,0 chrV 370316 . T C 2993 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=20.64;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3026,339,0 chrV 370346 . C T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=22.93;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3393,366,0 chrV 370367 . C T 3540.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=22.99;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3540,384,0 chrV 370417 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=196;Dels=0.00;FS=3.124;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;MQRankSum=-1.445;QD=16.50;ReadPosRankSum=1.714;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:1,192:196:99:3268,378,0 chrV 370435 . T G 3031 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;QD=16.04;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:3064,354,0 chrV 370455 . A G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.68;MQ0=0;MQRankSum=-1.242;QD=15.36;ReadPosRankSum=1.695;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:2783,315,0 chrV 370463 . G A 2674 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.67;MQ0=0;QD=15.82;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:2707,306,0 chrV 370471 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;QD=15.19;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2373,261,0 chrV 370573 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=23.96;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3498,381,0 chrV 370590 . A G 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.719;QD=21.69;ReadPosRankSum=1.626;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2853,333,0 chrV 370598 . A G 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=-1.261;QD=21.87;ReadPosRankSum=1.704;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2810,321,0 chrV 370611 . A G 2672 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.2635;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=20.24;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2705,309,0 chrV 370718 . C T 2747 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=19.35;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2780,312,0 chrV 370727 . C T 2741 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=20.01;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2774,303,0 chrV 370746 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=20.10;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2968,324,0 chrV 370850 . C T 2617 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.81;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2650,294,0 chrV 370893 . A T 3130 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=21.44;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3163,348,0 chrV 370904 . A G 2773 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=18.12;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2806,324,0 chrV 370913 . T C 2573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;MQRankSum=-0.337;QD=17.27;ReadPosRankSum=1.639;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2606,306,0 chrV 370940 . T C 2743 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=17.93;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2776,327,0 chrV 371069 . T C 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=160;Dels=0.00;FS=3.206;HaplotypeScore=11.3035;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.490;QD=19.79;ReadPosRankSum=1.710;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3199,375,0 chrV 371210 . C T 3175 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=20.75;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3208,348,0 chrV 371216 . G A 3188 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=21.25;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3221,348,0 chrV 371288 . A G 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.442;QD=20.30;ReadPosRankSum=1.684;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2997,351,0 chrV 371302 . T C 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=3.830;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.165;QD=21.40;ReadPosRankSum=1.710;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3360,384,0 chrV 371398 . G A 3140 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.43;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3173,345,0 chrV 371820 . G A 2451 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.78;MQ0=0;QD=19.30;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2484,270,0 chrV 371824 . C T 2444 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.46;MQ0=0;QD=18.80;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2477,270,0 chrV 371829 . T A 2332 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=16.54;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2365,258,0 chrV 371849 . C T 2227 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=0;QD=15.79;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2260,243,0 chrV 371856 . T G 1930 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.37;MQ0=0;QD=13.40;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:1963,228,0 chrV 371859 . C T 1991 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;QD=13.36;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2024,219,0 chrV 371986 . T C 1944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=5.030;HaplotypeScore=11.9198;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.129;QD=16.07;ReadPosRankSum=1.618;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1977,219,0 chrV 372248 . T A 1642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=1.124;QD=22.19;ReadPosRankSum=1.639;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1675,180,0 chrV 372263 . A G 1450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=4.533;HaplotypeScore=67.0931;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-0.708;QD=20.14;ReadPosRankSum=1.683;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1483,174,0 chrV 372276 . T A 1549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-0.375;QD=20.93;ReadPosRankSum=1.545;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1582,168,0 chrV 372487 . T C 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=99;Dels=0.00;FS=2.781;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-1.281;QD=23.46;ReadPosRankSum=2.400;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2356,270,0 chrV 372822 . A T 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.405;QD=20.93;ReadPosRankSum=1.700;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2272,252,0 chrV 372836 . C T 2324 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.52;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2357,255,0 chrV 373232 . T C 2043 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.70;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2076,240,0 chrV 373400 . T A 2723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=3.6007;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=0.302;QD=21.44;ReadPosRankSum=1.650;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2756,294,0 chrV 373407 . A G 2633 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.9227;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=20.10;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2666,297,0 chrV 373416 . G C 2838 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.4243;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=19.18;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2871,321,0 chrV 373688 . C T 6050.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=16.7136;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.00;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:6050,672,0 chrV 373736 . A G 5463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=255;Dels=0.00;FS=5.219;HaplotypeScore=16.0151;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.108;QD=21.42;ReadPosRankSum=2.940;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:3,248:255:99:5463,615,0 chrV 374562 . T A 4242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=178;Dels=0.00;FS=11.902;HaplotypeScore=19.7554;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.503;QD=23.83;ReadPosRankSum=2.915;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:4242,465,0 chrV 374738 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.5547;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.65;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3068,339,0 chrV 374835 . A G 1749 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=15.62;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1782,198,0 chrV 374887 . T C 2033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=126;Dels=0.00;FS=4.213;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;MQRankSum=-0.447;QD=16.13;ReadPosRankSum=1.620;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2066,237,0 chrV 374891 . C T 2134 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=17.35;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2167,231,0 chrV 374909 . T C 1945 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=16.07;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1978,231,0 chrV 374915 . T G 1952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=3.632;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-1.443;QD=16.27;ReadPosRankSum=1.703;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1985,219,0 chrV 375017 . C A 2294 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=24.67;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2327,249,0 chrV 375429 . C T 3388.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.29;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3388,369,0 chrV 375717 . T C 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.505;QD=22.18;ReadPosRankSum=1.704;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2761,309,0 chrV 375822 . C G 3030 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.90;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3063,357,0 chrV 376001 . G T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.20;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3330,381,0 chrV 376050 . A G 2756 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.59;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2789,315,0 chrV 376073 . C T 3042 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.57;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3075,342,0 chrV 376103 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.06;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3331,393,0 chrV 376178 . C G 2775 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.40;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2808,333,0 chrV 376204 . T C 2469 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.40;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2502,279,0 chrV 376275 . G A 3143 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.11;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3176,342,0 chrV 376375 . T C 3937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8807;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.492;QD=24.30;ReadPosRankSum=1.710;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3937,441,0 chrV 376468 . A C 2445 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.40;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2478,285,0 chrV 376885 . A G 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=3.623;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-1.048;QD=21.61;ReadPosRankSum=1.709;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3307,372,0 chrV 376886 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.689;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-0.866;QD=20.99;ReadPosRankSum=1.709;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3268,366,0 chrV 377025 . T C 3762.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.3762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3762,420,0 chrV 377102 . T C 3688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=3.280;HaplotypeScore=9.5744;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.981;QD=22.22;ReadPosRankSum=1.690;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3688,408,0 chrV 377190 . T C 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=160;Dels=0.00;FS=6.794;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.363;QD=21.06;ReadPosRankSum=2.419;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3370,384,0 chrV 377281 . C T 3984.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=19.4669;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.08;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3984,444,0 chrV 377456 . T C 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=3.465;HaplotypeScore=8.5636;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-1.145;QD=19.73;ReadPosRankSum=1.712;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3413,384,0 chrV 377465 . T C 3324.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.01;FS=0.000;HaplotypeScore=4.4222;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=18.47;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3324,372,0 chrV 377471 . C T 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.135;DP=181;Dels=0.00;FS=3.415;HaplotypeScore=8.9738;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-0.751;QD=19.03;ReadPosRankSum=1.174;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3444,375,0 chrV 377804 . G A 4659.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=23.89;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4659,510,0 chrV 377999 . A G 4547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;MQRankSum=-0.983;QD=20.48;ReadPosRankSum=1.670;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:4547,510,0 chrV 378036 . A C 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;MQRankSum=-1.521;QD=17.81;ReadPosRankSum=1.700;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:3830,447,0 chrV 378046 . T C 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=221;Dels=0.00;FS=5.391;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;MQRankSum=-1.192;QD=18.07;ReadPosRankSum=1.653;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,218:221:99:3994,447,0 chrV 378074 . T C 3105 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=16.78;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3138,354,0 chrV 378075 . A T 3211.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;MQRankSum=-0.223;QD=17.27;ReadPosRankSum=1.658;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3245,354,0 chrV 378110 . C T 3744.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.69;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3744,405,0 chrV 378265 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=-0.992;QD=17.94;ReadPosRankSum=2.422;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:2,175:180:99:3264,369,0 chrV 378269 . G A 3498.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=18.71;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3498,384,0 chrV 378297 . T C 3201 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=17.21;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3234,366,0 chrV 378395 . A C 5277.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.14;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5277,603,0 chrV 378586 . C T 4131.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.5277;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.57;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4131,456,0 chrV 379332 . C A 5746.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=15.8463;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.98;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5746,636,0 chrV 379879 . T C 5480.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=8.1740;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.84;SB=-3.111e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:5480,615,0 chrV 379893 . G A 5411.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=4.3621;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=20.89;SB=-3.191e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5411,591,0 chrV 379980 . G A 4805.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=17.4177;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.36;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4805,531,0 chrV 380064 . C T 5174.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.69;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:5174,570,0 chrV 380502 . G A 4245.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=25.42;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4245,456,0 chrV 380871 . C T 5269.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5269,582,0 chrV 381423 . G A 4111.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.84;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4111,471,0 chrV 381575 . A G 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.742;QD=22.41;ReadPosRankSum=1.711;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3653,411,0 chrV 381719 . T C 3769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.433;QD=23.12;ReadPosRankSum=1.711;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3769,420,0 chrV 381852 . T G 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=165;Dels=0.00;FS=2.972;HaplotypeScore=18.0737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.041;QD=22.48;ReadPosRankSum=2.390;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3709,423,0 chrV 382325 . G A 392 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=8.17;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:48:425,48,0 chrV 382350 . T C 701 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=12.98;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:81:734,81,0 chrV 382366 . A G 842 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=15.04;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:875,99,0 chrV 382369 . C G 874 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;QD=15.89;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:907,102,0 chrV 382384 . A G 1036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.81;MQ0=0;MQRankSum=1.072;QD=16.19;ReadPosRankSum=1.677;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1069,120,0 chrV 382388 . A G 1020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;MQRankSum=1.267;QD=15.22;ReadPosRankSum=1.681;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1053,123,0 chrV 382470 . C T 1613 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.04;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1646,183,0 chrV 382516 . T C 769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=13.4642;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=0.752;QD=12.82;ReadPosRankSum=1.536;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:1,56:60:90:802,90,0 chrV 382763 . A T 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=4.138;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.528;QD=24.11;ReadPosRankSum=1.709;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3689,405,0 chrV 383480 . C T 4033.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.44;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4033,444,0 chrV 383543 . T G 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.951;QD=21.50;ReadPosRankSum=1.706;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2893,339,0 chrV 383774 . T C 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=16.3532;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.221;QD=19.96;ReadPosRankSum=1.665;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3166,363,0 chrV 383903 . G A 3601.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3601,402,0 chrV 383986 . A G 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.727;DP=166;Dels=0.00;FS=6.093;HaplotypeScore=14.5201;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.327;QD=23.80;ReadPosRankSum=2.958;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3950,438,0 chrV 384035 . A G 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.755;DP=152;Dels=0.00;FS=9.650;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.073;QD=21.53;ReadPosRankSum=2.927;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3273,360,0 chrV 384158 . G A 3046 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3079,336,0 chrV 384497 . G A 3719.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.7953;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.75;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3719,423,0 chrV 385085 . T C 2325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=103;Dels=0.00;FS=3.184;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=0.815;QD=22.57;ReadPosRankSum=1.664;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2358,267,0 chrV 385325 . C T 3368.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.45;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3368,372,0 chrV 385358 . T C 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.286;DP=173;Dels=0.00;FS=9.112;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.966;QD=21.14;ReadPosRankSum=3.408;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:4,167:173:99:3657,420,0 chrV 385591 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.205;DP=153;Dels=0.00;FS=3.030;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.968;QD=21.78;ReadPosRankSum=2.385;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:3332,384,0 chrV 385850 . G A 4742.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4742,510,0 chrV 385956 . C T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3571,387,0 chrV 386230 . A G 2610 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=13.0924;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.93;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2643,294,0 chrV 386408 . T C 2776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=135;Dels=0.00;FS=10.175;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.397;QD=20.56;ReadPosRankSum=2.840;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:3,129:135:99:2809,315,0 chrV 386462 . A G 2781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;MQRankSum=-0.051;QD=20.45;ReadPosRankSum=1.707;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2814,321,0 chrV 386486 . T C 2692 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=0;QD=19.79;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2725,309,0 chrV 386503 . G A 2212 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.53;MQ0=0;QD=17.56;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2245,246,0 chrV 386508 . C T 2194 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.08;MQ0=0;QD=16.50;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2227,243,0 chrV 386529 . C T 1950 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=13.93;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1983,222,0 chrV 386588 . T C 4307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=0.477;QD=21.86;ReadPosRankSum=1.697;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4307,486,0 chrV 386623 . G A 4543.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.69;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4543,495,0 chrV 386670 . A G 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=143;Dels=0.00;FS=3.104;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.430;QD=19.63;ReadPosRankSum=1.708;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:2840,321,0 chrV 386692 . C T 2474 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.33;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2507,285,0 chrV 386715 . C T 2782 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=19.87;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:2815,312,0 chrV 386773 . T C 3580.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.4295;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.46;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3580,399,0 chrV 386824 . A G 3750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=15.9200;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.180;QD=20.38;ReadPosRankSum=2.396;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3750,426,0 chrV 386884 . A T 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=170;Dels=0.00;FS=8.806;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.614;QD=24.25;ReadPosRankSum=2.363;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4122,453,0 chrV 386938 . A T 4525.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.82;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4525,507,0 chrV 386965 . C T 3877.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.81;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3877,432,0 chrV 387039 . A T 2472 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.26;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2505,270,0 chrV 387052 . T G 2355 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=17.98;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2388,267,0 chrV 387055 . A G 2398 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=17.50;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2431,285,0 chrV 387086 . G A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.24;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3583,384,0 chrV 387188 . T C 2979 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.23;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3012,339,0 chrV 387212 . C T 2779 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=22.59;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2812,312,0 chrV 387695 . T A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.1382;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.74;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3298,357,0 chrV 388012 . T C 1910 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1943,222,0 chrV 388237 . T A 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.626;QD=23.15;ReadPosRankSum=1.626;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3066,333,0 chrV 388541 . G A 4695.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.8252;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.15;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4695,516,0 chrV 388556 . C G 4149.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.6132;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.39;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,207:214:99:4149,474,0 chrV 388646 . A T 6309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=254;Dels=0.00;FS=4.754;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.409;QD=24.84;ReadPosRankSum=1.718;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:1,253:254:99:6309,705,0 chrV 388982 . G A 3585.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.5833;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.90;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3585,393,0 chrV 389531 . A G 4802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.572;QD=23.31;ReadPosRankSum=1.682;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4802,546,0 chrV 389561 . G C 3681.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.68;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3681,426,0 chrV 389576 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=19.25;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3273,381,0 chrV 389810 . A G 5158.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.1652;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.67;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5158,579,0 chrV 389822 . C T 5020.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.83;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:5020,561,0 chrV 389903 . C T 3753.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.60;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3753,411,0 chrV 389989 . G A 4013.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.5844;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.47;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4013,438,0 chrV 390061 . G T 2980 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.8629;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.29;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3013,327,0 chrV 390093 . G A 2546 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.58;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2579,285,0 chrV 390437 . C T 1379 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.62;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1412,153,0 chrV 390575 . T C 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.115;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.742;QD=23.44;ReadPosRankSum=1.691;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,83:85:99:2025,231,0 chrV 390667 . T C 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.040;QD=20.72;ReadPosRankSum=2.418;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3244,360,0 chrV 390851 . C A 6529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=13.6813;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.300;QD=23.66;ReadPosRankSum=2.405;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:2,272:276:99:6529,706,0 chrV 391040 . T C 6513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=325;Dels=0.00;FS=3.535;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=0.965;QD=20.04;ReadPosRankSum=1.711;SB=-3.656e+03 GT:AD:DP:GQ:PL 1/1:1,324:325:99:6513,750,0 chrV 391055 . G T 6612.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=12.6633;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.16;SB=-3.859e+03 GT:AD:DP:GQ:PL 1/1:0,325:328:99:6612,729,0 chrV 391100 . A G 6732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.746;DP=322;Dels=0.00;FS=12.054;HaplotypeScore=16.3293;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.203;QD=20.91;ReadPosRankSum=3.819;SB=-3.811e+03 GT:AD:DP:GQ:PL 1/1:5,314:322:99:6732,768,0 chrV 391292 . C T 6286.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.94;SB=-3.196e+03 GT:AD:DP:GQ:PL 1/1:0,270:274:99:6286,687,0 chrV 391516 . C T 3902.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=20.22;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:3902,423,0 chrV 391523 . C T 3843.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.0877;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=20.23;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3843,423,0 chrV 391589 . G A 3839.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.33;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3839,417,0 chrV 391709 . A G 3648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.626;DP=180;Dels=0.00;FS=6.094;HaplotypeScore=14.3310;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.894;QD=20.27;ReadPosRankSum=2.950;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:3648,423,0 chrV 391914 . T C 4220.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.9931;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.49;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4220,477,0 chrV 392090 . A G 4771.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=15.1697;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.83;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4771,534,0 chrV 392252 . T C 4068.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.5999;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.87;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4068,456,0 chrV 392305 . C T 3478.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=20.83;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3478,396,0 chrV 392310 . G A 3567.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=21.23;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3567,384,0 chrV 392813 . T C 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=2.936;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.155;QD=22.55;ReadPosRankSum=2.408;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2717,312,0 chrV 392867 . G A 2866 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.88;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2899,312,0 chrV 393117 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.601;QD=21.42;ReadPosRankSum=1.710;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3406,381,0 chrV 393341 . A G 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.1805;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.333;QD=22.21;ReadPosRankSum=1.709;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:1,150:155:99:3443,381,0 chrV 393557 . A G 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=170;Dels=0.00;FS=3.671;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.671;QD=22.39;ReadPosRankSum=1.712;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3807,444,0 chrV 393589 . C T 3769.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.41;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3769,417,0 chrV 393855 . A G 2818 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=23.10;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2851,324,0 chrV 393902 . A G 2213 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.13;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2246,252,0 chrV 394021 . C T 2307 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.17;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2340,258,0 chrV 394072 . T C 1214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.077;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=51.6235;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.200;QD=13.80;ReadPosRankSum=2.531;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:7,81:88:99:1247,147,0 chrV 394083 . T A 139.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.577;DP=93;Dels=0.00;FS=13.226;HaplotypeScore=61.8917;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=2.400;QD=1.50;ReadPosRankSum=-0.280;SB=-8.131e+02 GT:AD:DP:GQ:PL 1/1:8,85:93:21:172,21,0 chrV 394357 . A G 3703.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.29;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3703,435,0 chrV 394774 . A G 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=3.995;HaplotypeScore=8.3362;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.506;QD=22.02;ReadPosRankSum=1.682;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3072,342,0 chrV 394875 . T C 3203 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=21.50;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3236,360,0 chrV 395075 . A G 2217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.592;QD=22.17;ReadPosRankSum=1.697;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2250,255,0 chrV 395227 . C G 2064 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.3925;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=14.74;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2097,237,0 chrV 395254 . A T 2607 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=18.10;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2640,294,0 chrV 395447 . C T 5818.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.14;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5818,619,0 chrV 395670 . T C 5216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.281;DP=263;Dels=0.00;FS=4.511;HaplotypeScore=19.0614;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.322;QD=19.83;ReadPosRankSum=2.656;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:4,258:263:99:5216,588,0 chrV 395714 . T G 5741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=267;Dels=0.00;FS=6.691;HaplotypeScore=17.1843;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.845;QD=21.50;ReadPosRankSum=2.431;SB=-3.247e+03 GT:AD:DP:GQ:PL 1/1:2,262:267:99:5741,639,0 chrV 395786 . C T 5170.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=15.1857;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.36;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5170,579,0 chrV 395813 . C T 4844.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.25;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4844,528,0 chrV 396138 . C T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.66;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3726,399,0 chrV 396464 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=3.7084;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.75;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3468,384,0 chrV 396489 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.501;QD=23.53;ReadPosRankSum=1.687;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3576,405,0 chrV 396945 . T A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.98;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4077,456,0 chrV 397105 . T G 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=153;Dels=0.00;FS=7.858;HaplotypeScore=10.3451;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.729;QD=19.92;ReadPosRankSum=2.384;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:2,148:153:99:3080,360,0 chrV 397401 . A G 4487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=205;Dels=0.00;FS=6.040;HaplotypeScore=14.1101;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.030;QD=21.89;ReadPosRankSum=2.936;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:3,201:205:99:4487,510,0 chrV 397753 . T G 2546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=2.911;HaplotypeScore=6.9444;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.956;QD=22.73;ReadPosRankSum=2.406;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2579,291,0 chrV 397892 . G A 2400 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2433,261,0 chrV 398321 . T C 6066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=261;Dels=0.00;FS=2.939;HaplotypeScore=19.5275;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.867;QD=23.24;ReadPosRankSum=2.431;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:2,257:261:99:6066,666,0 chrV 398928 . A G 3498.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.4484;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.07;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3498,399,0 chrV 398975 . T G 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=145;Dels=0.00;FS=6.484;HaplotypeScore=14.2687;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=-1.636;QD=21.49;ReadPosRankSum=2.399;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3149,357,0 chrV 400005 . A G 7271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.434;DP=318;Dels=0.00;FS=6.399;HaplotypeScore=10.8200;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.383;QD=22.86;ReadPosRankSum=2.372;SB=-3.981e+03 GT:AD:DP:GQ:PL 1/1:2,315:318:99:7271,813,0 chrV 400033 . C T 7607.01 PASS AC=2;AF=1.00;AN=2;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=12.5568;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.05;SB=-4.176e+03 GT:AD:DP:GQ:PL 1/1:0,344:345:99:7607,837,0 chrV 400481 . T C 5831.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=17.7473;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.52;SB=-3.046e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:5831,648,0 chrV 400856 . C T 6943.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=24.0610;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.36;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:0,323:325:99:6943,751,0 chrV 400890 . G A 6697.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=26.1097;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.53;SB=-3.179e+03 GT:AD:DP:GQ:PL 1/1:0,311:311:99:6697,741,0 chrV 401545 . A G 5518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=230;Dels=0.00;FS=3.536;HaplotypeScore=15.5527;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.760;QD=23.99;ReadPosRankSum=1.686;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:1,227:230:99:5518,618,0 chrV 401662 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3493,390,0 chrV 402148 . G A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=23.35;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3409,384,0 chrV 402168 . C T 3421.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=22.96;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3421,381,0 chrV 402268 . T A 4344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.155;DP=189;Dels=0.00;FS=5.250;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-1.446;QD=22.98;ReadPosRankSum=3.358;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:4,185:189:99:4344,480,0 chrV 402320 . T A 4040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.462;DP=225;Dels=0.00;FS=13.261;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=0.000;QD=17.96;ReadPosRankSum=4.468;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:7,217:225:99:4040,438,0 chrV 402321 . T C 3881.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=17.25;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:3881,441,0 chrV 402400 . A T 4819.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.21;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4819,531,0 chrV 402722 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3116,339,0 chrV 403012 . C A 2520 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.77;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2553,291,0 chrV 403054 . A G 2378 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.86;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2411,285,0 chrV 403078 . G A 2883 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.04;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2916,312,0 chrV 403133 . G A 3882.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.18;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3882,432,0 chrV 403557 . T C 3814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.506;DP=176;Dels=0.00;FS=11.885;HaplotypeScore=7.4273;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=0.264;QD=21.67;ReadPosRankSum=3.730;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:5,170:176:99:3814,441,0 chrV 403765 . G T 3105 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=19.78;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3138,354,0 chrV 403778 . T C 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=160;Dels=0.00;FS=3.912;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-0.909;QD=18.77;ReadPosRankSum=1.689;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3037,342,0 chrV 403825 . A G 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=0.789;QD=19.14;ReadPosRankSum=1.709;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2846,324,0 chrV 404317 . T C 3375.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.3750;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.28;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3375,375,0 chrV 404530 . A T 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;MQRankSum=-0.866;QD=10.88;ReadPosRankSum=1.670;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1252,144,0 chrV 404541 . G A 1501 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=12.30;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:1534,171,0 chrV 404924 . T G 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.041;QD=19.95;ReadPosRankSum=1.711;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3352,381,0 chrV 406216 . T C 3801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=163;Dels=0.00;FS=3.345;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=0.278;QD=23.32;ReadPosRankSum=1.668;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3801,432,0 chrV 406492 . G C 2511 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.02;FS=0.000;HaplotypeScore=45.3462;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.93;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,118:123:99:2544,288,0 chrV 406631 . A G 2278 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.01;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2311,264,0 chrV 406750 . C T 2182 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=21.60;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2215,249,0 chrV 406753 . G A 2240 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=22.63;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2273,249,0 chrV 406754 . G A 2283 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=23.30;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2316,252,0 chrV 406935 . G T 1707 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=24.04;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1740,186,0 chrV 407018 . C T 1905 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=22.15;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1938,210,0 chrV 407063 . C T 1347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.200;DP=78;Dels=0.00;FS=3.977;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.979;QD=17.27;ReadPosRankSum=-0.523;SB=-6.265e+02 GT:AD:DP:GQ:PL 1/1:6,71:78:99:1380,150,0 chrV 407153 . T A 1386 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=16.50;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1419,159,0 chrV 407199 . T C 1919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=-0.635;QD=15.86;ReadPosRankSum=1.703;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:1,119:121:99:1952,222,0 chrV 407205 . T C 2134 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=17.64;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2167,246,0 chrV 407419 . T C 4294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=0.719;QD=22.02;ReadPosRankSum=1.679;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4294,489,0 chrV 407957 . G T 4063.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4063,441,0 chrV 408144 . C G 3370.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.08;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3370,381,0 chrV 408389 . G A 3548.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.2619;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.97;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3548,396,0 chrV 408467 . G A 2582 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.70;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2615,285,0 chrV 408947 . G A 2382 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.85;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2415,276,0 chrV 408950 . T C 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-1.063;QD=19.55;ReadPosRankSum=1.674;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2360,276,0 chrV 409144 . C T 2960 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.12;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2993,327,0 chrV 409183 . G A 2470 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.86;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2503,273,0 chrV 409209 . A G 2608 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.73;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2641,303,0 chrV 409300 . T C 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.5945;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.413;QD=22.82;ReadPosRankSum=1.687;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3537,393,0 chrV 409327 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6781;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-0.043;QD=21.69;ReadPosRankSum=1.710;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3471,390,0 chrV 409394 . A G 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.753;QD=24.20;ReadPosRankSum=1.707;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3339,369,0 chrV 410518 . C T 3355.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.96;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3355,369,0 chrV 410947 . G A 6502.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.58;SB=-3.143e+03 GT:AD:DP:GQ:PL 1/1:0,314:316:99:6502,709,0 chrV 412867 . G A 1644 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.83;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1677,183,0 chrV 413111 . T C 1100 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.37;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1133,129,0 chrV 413129 . G A 971 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=20.23;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1004,108,0 chrV 413160 . G A 743 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=18.12;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:87:776,87,0 chrV 413233 . G A 1540 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1573,171,0 chrV 413281 . T A 1971 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.2921;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2004,228,0 chrV 414190 . T A 4285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=3.131;HaplotypeScore=8.2203;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.634;QD=23.42;ReadPosRankSum=1.675;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4285,465,0 chrV 414243 . A G 3171 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.0066;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.43;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3204,360,0 chrV 414269 . T G 2976 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.81;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3009,348,0 chrV 414436 . A T 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=143;Dels=0.00;FS=3.492;HaplotypeScore=132.2345;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=0.812;QD=0.11;ReadPosRankSum=1.684;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:6:47,6,0 chrV 414642 . T C 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=187;Dels=0.00;FS=2.872;HaplotypeScore=11.1666;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.007;QD=22.26;ReadPosRankSum=2.410;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:4163,474,0 chrV 414720 . C T 5133.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.44;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5133,567,0 chrV 414780 . T C 5214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.897;QD=23.17;ReadPosRankSum=1.639;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:5214,597,0 chrV 415070 . G A 6493.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=14.8677;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.05;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:6493,714,0 chrV 415310 . T C 4845.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.1582;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.53;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,232:236:99:4845,570,0 chrV 415411 . C A 3145 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.30;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3178,348,0 chrV 415657 . G T 2249 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.72;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2282,255,0 chrV 415894 . A C 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=137;Dels=0.00;FS=8.136;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.117;QD=22.47;ReadPosRankSum=2.414;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3112,357,0 chrV 416544 . C T 3856.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=24.10;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3856,417,0 chrV 416576 . C T 3720.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=22.41;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3720,402,0 chrV 416582 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=21.37;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3675,399,0 chrV 416792 . C T 3495.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.98;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3495,378,0 chrV 416927 . C A 3516.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.28;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3516,384,0 chrV 417320 . A G 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.567;DP=158;Dels=0.00;FS=2.777;HaplotypeScore=15.3323;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.391;QD=21.60;ReadPosRankSum=2.418;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:2,152:158:99:3413,381,0 chrV 417511 . G A 4564.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.0776;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.71;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4564,495,0 chrV 417748 . G A 3295.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.8881;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.23;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3295,357,0 chrV 417790 . A G 3008 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.06;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3041,339,0 chrV 417910 . T C 3072 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.19;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3105,354,0 chrV 418504 . A G 2133 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2166,243,0 chrV 418703 . T C 2745 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.87;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2778,324,0 chrV 418792 . G A 3537.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=14.1172;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.39;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3537,381,0 chrV 418868 . A G 3959.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=18.85;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:3959,453,0 chrV 418874 . G A 4147.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=19.65;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4147,450,0 chrV 419104 . A G 5045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.342;DP=223;Dels=0.00;FS=9.124;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.548;QD=22.62;ReadPosRankSum=3.397;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:4,217:223:99:5045,570,0 chrV 419206 . G T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3764,411,0 chrV 419536 . T G 2800 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2833,318,0 chrV 419568 . G A 2038 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.16;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2071,228,0 chrV 419631 . T G 1594 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=13.62;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1627,183,0 chrV 419827 . T A 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.3288;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.713;QD=23.90;ReadPosRankSum=1.664;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3656,396,0 chrV 420003 . T A 4200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=184;Dels=0.00;FS=3.510;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.546;QD=22.83;ReadPosRankSum=1.713;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4200,462,0 chrV 420040 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=162;Dels=0.00;FS=3.065;HaplotypeScore=16.7544;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-0.693;QD=21.17;ReadPosRankSum=1.624;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3430,387,0 chrV 420175 . T C 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=176;Dels=0.00;FS=9.257;HaplotypeScore=9.9567;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=1.669;QD=22.29;ReadPosRankSum=2.914;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:3923,450,0 chrV 420199 . T C 3682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.263;DP=169;Dels=0.00;FS=8.980;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-0.522;QD=21.79;ReadPosRankSum=3.408;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:4,165:169:99:3682,420,0 chrV 420266 . T C 4260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=201;Dels=0.00;FS=6.031;HaplotypeScore=9.6782;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=1.025;QD=21.19;ReadPosRankSum=2.965;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:4260,477,0 chrV 420279 . A G 3961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=3.171;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=1.068;QD=20.52;ReadPosRankSum=1.714;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:3961,456,0 chrV 420292 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.07;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3853,435,0 chrV 420376 . A G 3927.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.4523;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.00;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3927,456,0 chrV 420432 . A G 4260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.2922;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.512;QD=22.07;ReadPosRankSum=1.678;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4260,477,0 chrV 420478 . C A 4846.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.9072;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=23.87;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4846,534,0 chrV 420596 . C A 4776.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=23.64;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4776,525,0 chrV 420619 . T C 4128.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.3777;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.17;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4128,477,0 chrV 421040 . C T 1972 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.05;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2005,219,0 chrV 421115 . T C 1726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.9195;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.716;QD=22.71;ReadPosRankSum=1.640;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1759,201,0 chrV 421423 . A T 4052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=183;Dels=0.00;FS=3.229;HaplotypeScore=11.3500;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.237;QD=22.14;ReadPosRankSum=1.713;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4052,447,0 chrV 421634 . A G 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.760;DP=156;Dels=0.00;FS=2.575;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.578;QD=21.91;ReadPosRankSum=2.942;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:3,152:156:99:3418,393,0 chrV 422000 . G A 3322.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.76;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3322,360,0 chrV 422021 . C T 4112.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.0135;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.46;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4112,462,0 chrV 422226 . A C 5134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.859;QD=21.39;ReadPosRankSum=1.703;SB=-2.913e+03 GT:AD:DP:GQ:PL 1/1:1,237:240:99:5134,576,0 chrV 422255 . T C 4895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=228;Dels=0.00;FS=3.895;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.003;QD=21.47;ReadPosRankSum=1.686;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:4895,561,0 chrV 422567 . T C 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.7374;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.619;QD=23.25;ReadPosRankSum=1.709;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3558,414,0 chrV 422613 . G C 2879 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.33;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2912,330,0 chrV 422645 . A G 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.064;QD=20.82;ReadPosRankSum=1.706;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2886,321,0 chrV 423131 . G A 2947 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.2652;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.36;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2980,324,0 chrV 423233 . G C 2582 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.52;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2615,297,0 chrV 423827 . A G 3224.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.757;DP=153;Dels=0.00;FS=5.590;HaplotypeScore=9.0387;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.888;QD=21.07;ReadPosRankSum=2.941;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3257,378,0 chrV 423857 . G A 3203 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=14.1998;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.79;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3236,351,0 chrV 424482 . G A 2366 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.66;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2399,261,0 chrV 424681 . A T 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.263;DP=146;Dels=0.02;FS=9.111;HaplotypeScore=15.5982;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.116;QD=16.27;ReadPosRankSum=3.299;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:4,139:143:99:2408,264,0 chrV 425002 . G A 1643 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=21.91;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1676,183,0 chrV 425334 . A G 4425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.537;QD=22.01;ReadPosRankSum=1.697;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4425,495,0 chrV 425386 . A C 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=189;Dels=0.00;FS=2.578;HaplotypeScore=15.7076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.835;QD=19.74;ReadPosRankSum=2.942;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:3,186:189:99:3730,432,0 chrV 425833 . G C 2529 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2838;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.43;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2562,297,0 chrV 425902 . G A 2581 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9237;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.98;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2614,288,0 chrV 425923 . T C 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=129;Dels=0.00;FS=7.450;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.410;QD=21.19;ReadPosRankSum=2.412;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2767,315,0 chrV 426215 . T C 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.359;DP=157;Dels=0.00;FS=9.191;HaplotypeScore=13.2525;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.507;QD=21.96;ReadPosRankSum=3.314;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:4,153:157:99:3447,384,0 chrV 426331 . C A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.66;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3347,369,0 chrV 426332 . A T 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.257;DP=164;Dels=0.00;FS=12.421;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=-1.082;QD=20.27;ReadPosRankSum=3.171;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:4,160:164:99:3324,369,0 chrV 426357 . G T 2939 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.34;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2972,318,0 chrV 426384 . T G 2799 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.9410;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=17.60;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:2832,336,0 chrV 426433 . A G 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.5594;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.526;QD=20.78;ReadPosRankSum=1.711;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3511,402,0 chrV 426583 . C A 3954.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.99;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3954,450,0 chrV 426630 . C G 4264.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.05;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,180:185:99:4264,477,0 chrV 426952 . C T 3738.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.99;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3738,411,0 chrV 426961 . T C 3306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.904;DP=163;Dels=0.00;FS=7.976;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=0.220;QD=20.28;ReadPosRankSum=2.408;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:4,159:163:99:3306,357,0 chrV 427478 . G C 5737.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.68;SB=-3.017e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5737,657,0 chrV 427684 . A G 3974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.504;DP=202;Dels=0.00;FS=7.950;HaplotypeScore=26.2311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.413;QD=19.67;ReadPosRankSum=3.787;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:5,194:202:99:3974,453,0 chrV 427920 . A G 2715 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.11;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2748,318,0 chrV 428222 . G A 4334.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=24.08;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4334,471,0 chrV 428230 . T C 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=180;Dels=0.00;FS=2.692;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-0.322;QD=21.24;ReadPosRankSum=2.422;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3824,444,0 chrV 428251 . T G 3608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=178;Dels=0.00;FS=2.928;HaplotypeScore=8.2414;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=-0.090;QD=20.27;ReadPosRankSum=2.394;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3608,414,0 chrV 428311 . C T 4427.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.1643;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.47;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4427,486,0 chrV 428860 . T C 3441.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8811;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.79;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3441,387,0 chrV 428948 . A G 3812.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.42;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3812,441,0 chrV 429245 . G A 3463.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=25.28;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3463,378,0 chrV 429460 . A C 3294.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.09;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3294,369,0 chrV 429466 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=21.26;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3699,393,0 chrV 429593 . T A 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.661;DP=169;Dels=0.00;FS=11.785;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.173;QD=19.36;ReadPosRankSum=2.899;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3271,357,0 chrV 429823 . A T 3572.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.35;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3572,396,0 chrV 429889 . T C 3720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=159;Dels=0.00;FS=2.870;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.743;QD=23.40;ReadPosRankSum=2.403;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3720,411,0 chrV 430454 . A T 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=149;Dels=0.00;FS=2.876;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.872;QD=17.71;ReadPosRankSum=2.384;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2672,303,0 chrV 430620 . T G 1897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=3.821;HaplotypeScore=7.3302;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.658;QD=19.97;ReadPosRankSum=1.695;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1930,225,0 chrV 430899 . T C 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.006;QD=22.08;ReadPosRankSum=1.699;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2374,264,0 chrV 431114 . G A 2701 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=12.4840;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.51;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2734,297,0 chrV 431224 . C T 3586.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.99;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3586,396,0 chrV 431571 . G A 521.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.116;DP=68;Dels=0.00;FS=11.812;HaplotypeScore=4.3077;MLEAC=1;MLEAF=0.500;MQ=17.30;MQ0=4;MQRankSum=1.672;QD=7.66;ReadPosRankSum=-0.471;SB=-2.210e+02 GT:AD:DP:GQ:PL 0/1:21,47:68:76:551,0,76 chrV 431815 . C T 131.79 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=12.9753;MLEAC=1;MLEAF=0.500;MQ=17.97;MQ0=3;MQRankSum=-0.783;QD=4.71;ReadPosRankSum=-0.052;SB=-2.434e+01 GT:AD:DP:GQ:PL 0/1:2,25:28:4:161,0,4 chrV 431836 . C T 681 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=39.11;MQ0=0;QD=6.42;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:81:714,81,0 chrV 431930 . C T 3957.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=23.69;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3957,432,0 chrV 431986 . G C 3932.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.4322;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=24.12;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3932,444,0 chrV 432695 . G A 3566.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.93;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3566,381,0 chrV 433179 . T A 193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.215;DP=59;Dels=0.00;FS=9.333;HaplotypeScore=29.7268;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;MQRankSum=-1.531;QD=3.27;ReadPosRankSum=-3.629;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:23,36:59:27:226,27,0 chrV 434403 . A T 1522 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=18.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1555,168,0 chrV 434405 . A G 1469 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=18.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1502,171,0 chrV 434623 . T C 2386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=117;Dels=0.00;FS=6.702;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=1.377;QD=20.39;ReadPosRankSum=1.643;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2419,285,0 chrV 434860 . C T 879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=3;MQRankSum=0.454;QD=10.10;ReadPosRankSum=1.196;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:4,83:87:99:912,102,0 chrV 434869 . A G 761 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=3;QD=9.88;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:3,74:77:93:794,93,0 chrV 434924 . T C 786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.810;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.99;MQ0=1;MQRankSum=-0.162;QD=11.23;ReadPosRankSum=2.898;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:4,66:70:96:819,96,0 chrV 434928 . A G 795 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.76;MQ0=0;QD=11.36;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,67:70:96:828,96,0 chrV 434949 . G A 1543 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=35.89;MQ0=0;QD=19.29;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1576,174,0 chrV 434979 . T C 1863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=99;Dels=0.00;FS=6.018;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=0;MQRankSum=-2.660;QD=18.82;ReadPosRankSum=2.867;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:3,95:99:99:1896,216,0 chrV 434981 . T A 2018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.80;MQ0=0;MQRankSum=-1.664;QD=19.98;ReadPosRankSum=1.698;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2051,222,0 chrV 435085 . T A 3501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=158;Dels=0.00;FS=3.004;HaplotypeScore=10.8751;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;MQRankSum=-1.734;QD=22.16;ReadPosRankSum=2.387;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3501,396,0 chrV 435140 . C T 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=125;Dels=0.00;FS=3.487;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;MQRankSum=-1.261;QD=22.18;ReadPosRankSum=-1.261;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2806,295,0 chrV 435174 . A G 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=146;Dels=0.00;FS=8.157;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;MQRankSum=1.670;QD=18.08;ReadPosRankSum=2.382;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:2672,312,0 chrV 435194 . G C 2456 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=0;QD=17.54;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2489,288,0 chrV 435213 . C G 2254 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=15.99;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2287,264,0 chrV 435221 . G T 2253 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=15.65;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2286,261,0 chrV 435243 . G A 2706 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=17.24;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2739,303,0 chrV 435309 . T A 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0748;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.083;QD=21.09;ReadPosRankSum=1.299;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3374,378,0 chrV 435596 . C G 2707 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=22.01;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2740,315,0 chrV 435632 . G A 2850 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=23.55;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2883,309,0 chrV 435665 . C T 2911 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=22.39;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2944,318,0 chrV 435836 . T A 1832 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.31;MQ0=0;QD=20.36;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1865,207,0 chrV 435844 . A C 1753 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=37.82;MQ0=0;QD=20.15;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1786,201,0 chrV 435858 . A G 1406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;MQRankSum=-1.605;QD=19.26;ReadPosRankSum=2.382;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1439,165,0 chrV 435863 . A T 1241 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.15;MQ0=0;QD=18.80;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1274,144,0 chrV 435886 . G A 1012 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=21.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1045,111,0 chrV 436418 . C T 841 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.16;MQ0=0;QD=10.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:96:874,96,0 chrV 436499 . A G 1694 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=16.94;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1727,198,0 chrV 436528 . T C 2282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;MQRankSum=-1.549;QD=17.42;ReadPosRankSum=2.018;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2315,258,0 chrV 436536 . T G 2392 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=17.21;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2425,276,0 chrV 436897 . T C 3166 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3199,366,0 chrV 437231 . C T 2250 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.96;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2283,249,0 chrV 437241 . G A 1852 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.35;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1885,210,0 chrV 437378 . T C 3226.07 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.36;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3259,369,0 chrV 437901 . C T 3577.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=16.6243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3577,390,0 chrV 438038 . A G 3164 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3197,354,0 chrV 438230 . T A 4040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-0.980;QD=23.09;ReadPosRankSum=1.692;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4040,453,0 chrV 438396 . G A 4659.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.39;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4659,501,0 chrV 438514 . G C 2825 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.89;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2858,324,0 chrV 438579 . C T 4273.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.48;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4273,480,0 chrV 438623 . A C 3580.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.55;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3580,399,0 chrV 438674 . T C 2043 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.64;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2076,234,0 chrV 438684 . C A 2021 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.62;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2054,225,0 chrV 438836 . A C 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.02;FS=3.556;HaplotypeScore=26.5464;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-1.050;QD=19.37;ReadPosRankSum=1.678;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2532,294,0 chrV 438849 . T C 2558 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=18.81;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2591,291,0 chrV 438887 . A G 1929 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=17.86;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1962,219,0 chrV 438946 . G C 1491 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=12.97;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1524,174,0 chrV 439039 . C T 3194 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.31;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3227,348,0 chrV 439206 . T C 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=139;Dels=0.00;FS=2.589;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-1.790;QD=21.53;ReadPosRankSum=2.950;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3025,342,0 chrV 439254 . C T 3768.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.91;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3768,411,0 chrV 439255 . A G 3572.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.01;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3572,414,0 chrV 439285 . C T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.06;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3290,366,0 chrV 439581 . C T 4958.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4958,540,0 chrV 439909 . T C 2835 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.54;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2868,324,0 chrV 440428 . C G 3955.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.61;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3955,450,0 chrV 440826 . G A 3982.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3982,435,0 chrV 441237 . T C 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.723;QD=22.29;ReadPosRankSum=2.412;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2997,342,0 chrV 441329 . C T 2280 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.35;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2313,252,0 chrV 441415 . C T 3787.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.67;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3787,411,0 chrV 441532 . G T 4314.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.07;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4314,474,0 chrV 441625 . C T 3672.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=23.24;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3672,411,0 chrV 441679 . T C 4390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=192;Dels=0.00;FS=6.607;HaplotypeScore=9.4272;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.055;QD=22.86;ReadPosRankSum=2.347;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4390,501,0 chrV 441820 . T C 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=4.568;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.878;QD=21.32;ReadPosRankSum=1.566;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3167,354,0 chrV 441843 . A G 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=0.546;QD=19.66;ReadPosRankSum=1.686;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2963,348,0 chrV 441870 . T A 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=4.050;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=0.503;QD=19.97;ReadPosRankSum=1.710;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3128,336,0 chrV 441880 . G A 3215.99 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.26;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3249,351,0 chrV 441963 . T C 2866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.9307;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.660;QD=22.57;ReadPosRankSum=1.595;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2899,327,0 chrV 442269 . C A 4104.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.3426;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.83;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4104,462,0 chrV 442411 . T G 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=176;Dels=0.00;FS=3.018;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=0.554;QD=20.36;ReadPosRankSum=2.422;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3584,423,0 chrV 442510 . A G 4222.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=18.36;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:4222,486,0 chrV 442511 . A G 4378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=230;Dels=0.00;FS=7.283;HaplotypeScore=6.0882;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-0.244;QD=19.03;ReadPosRankSum=2.384;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:2,226:230:99:4378,486,0 chrV 442662 . C T 4943.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.6420;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.27;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4943,534,0 chrV 442663 . C T 4929.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=1.8533;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=22.30;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:4929,534,0 chrV 442915 . A G 2816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=131;Dels=0.00;FS=3.027;HaplotypeScore=11.5180;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.009;QD=21.50;ReadPosRankSum=2.242;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2849,318,0 chrV 443051 . T C 2539 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.87;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2572,288,0 chrV 443089 . A G 2918 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=22.27;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2951,333,0 chrV 443290 . T G 1946 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=43.51;MQ0=0;QD=22.63;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1979,234,0 chrV 443296 . T C 1747 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=0;QD=22.40;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1780,207,0 chrV 443322 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.32;MQ0=0;QD=22.33;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1507,171,0 chrV 443323 . A G 1449 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;QD=22.29;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1482,171,0 chrV 449650 . G A 448 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=0;QD=23.58;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:51:481,51,0 chrV 449685 . T C 422 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=0;QD=22.21;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:51:455,51,0 chrV 449726 . C A 209.01 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=14.93;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:27:242,27,0 chrV 450260 . C T 184.03 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6000;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;QD=2.24;SB=-2.504e+01 GT:AD:DP:GQ:PL 1/1:0,82:82:24:217,24,0 chrV 450386 . C T 1828 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=21.26;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1861,207,0 chrV 450644 . A G 3619.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.93;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3619,408,0 chrV 450716 . G T 3835.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.69;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3835,423,0 chrV 451138 . A G 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=3.310;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.722;QD=23.08;ReadPosRankSum=1.703;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2803,312,0 chrV 451909 . A G 4649.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.2504;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.24;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4649,540,0 chrV 452483 . A C 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=4.132;HaplotypeScore=14.4075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.060;QD=22.53;ReadPosRankSum=1.660;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3312,384,0 chrV 452746 . G A 3905.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.81;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3905,441,0 chrV 452827 . T C 2995 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.35;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3028,336,0 chrV 452934 . A G 3295.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.26;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3295,390,0 chrV 452954 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.79;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3256,375,0 chrV 453437 . G C 3537.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6432;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.12;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3537,405,0 chrV 453661 . A G 4325.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=22.41;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4325,504,0 chrV 453675 . T G 4546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-0.884;QD=23.19;ReadPosRankSum=1.697;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4546,507,0 chrV 453740 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.9859;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.23;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3006,327,0 chrV 453798 . C T 3170 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8863;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3203,351,0 chrV 453920 . T C 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=147;Dels=0.00;FS=10.980;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.576;QD=19.29;ReadPosRankSum=2.910;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:3,142:147:99:2868,336,0 chrV 454019 . C T 2732 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2765,303,0 chrV 454337 . G A 3280.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=16.1037;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.62;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3280,351,0 chrV 454541 . G A 5116.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=18.8402;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.36;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5116,570,0 chrV 454697 . A C 5153.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.1845;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.80;SB=-2.900e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5153,576,0 chrV 454979 . A G 2364 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.38;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2397,276,0 chrV 455275 . G A 1928 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1961,216,0 chrV 455575 . A G 3658.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3658,411,0 chrV 455676 . T C 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.754;DP=135;Dels=0.00;FS=5.746;HaplotypeScore=12.9289;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=-0.097;QD=20.22;ReadPosRankSum=2.948;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:2763,315,0 chrV 455960 . C T 3296.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.58;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3296,369,0 chrV 456048 . C T 3022 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.39;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3055,333,0 chrV 456087 . A G 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=144;Dels=0.00;FS=3.030;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=-0.834;QD=20.10;ReadPosRankSum=2.415;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:2928,333,0 chrV 456116 . A T 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.342;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.382;QD=18.56;ReadPosRankSum=1.707;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2557,285,0 chrV 456140 . G A 2813 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.40;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2846,312,0 chrV 456278 . C A 3829.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.9420;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.93;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3829,414,0 chrV 456505 . C T 3650.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.50;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3650,396,0 chrV 456690 . C T 4100.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4100,444,0 chrV 457376 . C G 4512.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.42;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:4512,507,0 chrV 457524 . T A 5019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=1.268;QD=24.01;ReadPosRankSum=1.682;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:5019,543,0 chrV 457575 . A G 4774.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.94;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4774,549,0 chrV 457596 . T C 4907.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=19.79;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:4907,558,0 chrV 457604 . G A 4989.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.88;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:4989,555,0 chrV 457805 . T C 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=3.556;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-0.570;QD=22.29;ReadPosRankSum=1.668;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3589,402,0 chrV 457840 . C T 4014.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=24.63;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4014,432,0 chrV 457989 . G A 3278.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.08;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3278,366,0 chrV 458048 . G C 2719 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=17.89;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2752,318,0 chrV 458057 . C A 2934 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.34;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:2967,327,0 chrV 458086 . G A 3326.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=18.90;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3326,360,0 chrV 458181 . C G 4545.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.8074;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.19;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4545,522,0 chrV 458406 . A G 4380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.320;DP=199;Dels=0.00;FS=7.961;HaplotypeScore=14.6647;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.504;QD=22.01;ReadPosRankSum=3.346;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:4,195:199:99:4380,513,0 chrV 458604 . A T 2493 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.18;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2526,270,0 chrV 458610 . A G 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-0.307;QD=19.03;ReadPosRankSum=1.704;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2393,273,0 chrV 458640 . T C 2435 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=19.48;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2468,279,0 chrV 458865 . G A 5059.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.5082;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.68;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:5059,552,0 chrV 458964 . A G 4458.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4458,507,0 chrV 459185 . A G 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.153;QD=19.76;ReadPosRankSum=2.362;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3360,384,0 chrV 459496 . G A 3461.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=17.5539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3461,378,0 chrV 459578 . A G 3537.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.39;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3537,402,0 chrV 459697 . C T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.8017;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.65;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3330,366,0 chrV 459740 . C T 3155 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.9591;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.76;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3188,357,0 chrV 459953 . T C 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=132;Dels=0.00;FS=2.591;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.626;QD=23.77;ReadPosRankSum=2.932;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:3171,351,0 chrV 460003 . C G 2946 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.9055;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=18.19;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,158:162:99:2979,345,0 chrV 460008 . T C 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=-0.782;QD=17.68;ReadPosRankSum=1.711;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:2933,342,0 chrV 460044 . G A 3701.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=18.05;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:3701,420,0 chrV 460131 . A G 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=204;Dels=0.00;FS=8.164;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.415;QD=20.75;ReadPosRankSum=2.329;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4234,492,0 chrV 460182 . A G 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=195;Dels=0.00;FS=3.169;HaplotypeScore=14.5524;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=1.093;QD=18.27;ReadPosRankSum=1.679;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:3563,408,0 chrV 460225 . A G 4069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.415;DP=197;Dels=0.00;FS=8.576;HaplotypeScore=7.9121;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-1.367;QD=20.65;ReadPosRankSum=3.415;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:4,193:197:99:4069,459,0 chrV 460455 . T C 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.752;DP=142;Dels=0.00;FS=6.090;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.419;QD=21.82;ReadPosRankSum=2.922;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3131,360,0 chrV 460898 . A G 5648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=266;Dels=0.00;FS=3.026;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;MQRankSum=0.494;QD=21.23;ReadPosRankSum=2.394;SB=-3.275e+03 GT:AD:DP:GQ:PL 1/1:2,264:266:99:5648,660,0 chrV 460955 . G A 4930.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.21;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4930,546,0 chrV 461043 . T A 6291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=293;Dels=0.00;FS=6.620;HaplotypeScore=18.5906;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.440;QD=21.47;ReadPosRankSum=2.391;SB=-3.654e+03 GT:AD:DP:GQ:PL 1/1:2,291:293:99:6291,687,0 chrV 461351 . G A 5982.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.46;SB=-3.306e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5982,643,0 chrV 462462 . G A 2630 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=11.2310;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.67;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2663,300,0 chrV 462614 . A G 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=153;Dels=0.00;FS=4.576;HaplotypeScore=13.6122;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.775;QD=22.65;ReadPosRankSum=1.709;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3465,390,0 chrV 462961 . T C 139.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.297;DP=137;Dels=0.00;FS=2.804;HaplotypeScore=108.9916;MLEAC=1;MLEAF=0.500;MQ=48.92;MQ0=0;MQRankSum=5.513;QD=1.01;ReadPosRankSum=-1.598;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:91,46:137:99:169,0,146 chrV 463004 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.2484;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.12;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3085,342,0 chrV 463157 . G A 4990.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.05;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,231:237:99:4990,558,0 chrV 464103 . C T 3551.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.76;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3551,393,0 chrV 464164 . G A 5317.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.6294;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.12;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5317,600,0 chrV 464192 . A G 5027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=223;Dels=0.00;FS=6.951;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.160;QD=22.54;ReadPosRankSum=2.383;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:5027,555,0 chrV 464291 . T C 4066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=211;Dels=0.00;FS=5.940;HaplotypeScore=15.7855;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-0.995;QD=19.27;ReadPosRankSum=2.938;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:3,207:211:99:4066,456,0 chrV 464304 . C G 4238.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.09;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4238,483,0 chrV 464494 . G A 5746.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.80;SB=-3.248e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:5746,622,0 chrV 464736 . C T 4473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.401;DP=200;Dels=0.00;FS=3.495;HaplotypeScore=18.1137;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.715;QD=22.37;ReadPosRankSum=-0.722;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4473,468,0 chrV 464776 . G A 4270.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.01;FS=0.000;HaplotypeScore=15.0309;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.24;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4270,477,0 chrV 464956 . T C 2793 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.09;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2826,324,0 chrV 464985 . C T 3000 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.28;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3033,327,0 chrV 465018 . G A 1804 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.02;FS=0.000;HaplotypeScore=14.7971;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=15.03;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:1837,198,0 chrV 465109 . T C 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=141;Dels=0.00;FS=5.582;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.493;QD=24.17;ReadPosRankSum=2.922;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:3408,384,0 chrV 465291 . A G 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.785;QD=23.72;ReadPosRankSum=1.686;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3582,399,0 chrV 465644 . A G 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=3.750;HaplotypeScore=7.4639;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-1.607;QD=20.90;ReadPosRankSum=1.690;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3470,399,0 chrV 465653 . C A 3753.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.0460;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.08;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3753,414,0 chrV 465743 . G A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.2906;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.01;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3405,372,0 chrV 465932 . A G 2182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=103;Dels=0.00;FS=2.905;HaplotypeScore=8.3303;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.681;QD=21.18;ReadPosRankSum=2.354;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2215,246,0 chrV 466246 . G T 2883 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2916,321,0 chrV 466688 . G A 2892 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.95;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2925,315,0 chrV 466781 . C T 3132 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3165,351,0 chrV 466823 . G C 2875 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.83;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2908,339,0 chrV 467219 . G A 4725.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.05;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4725,507,0 chrV 467312 . G A 5194.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.29;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5194,582,0 chrV 467489 . C T 4969.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=17.2520;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.38;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4969,549,0 chrV 467523 . G A 5602.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=7.8243;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.44;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5602,606,0 chrV 467553 . T C 5164.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.2649;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.34;SB=-3.001e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5164,585,0 chrV 468752 . C G 4542.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=14.1092;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.22;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4542,510,0 chrV 468838 . A G 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.206;QD=20.10;ReadPosRankSum=2.389;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:2,160:164:99:3297,369,0 chrV 468932 . A T 3615.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.0958;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=23.47;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3615,390,0 chrV 469002 . C T 2985 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.3012;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=18.20;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3018,342,0 chrV 469007 . C T 3225.28 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=18.4116;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=19.31;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,163:167:99:3258,357,0 chrV 469111 . A C 2798 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=19.30;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2831,321,0 chrV 469112 . T C 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;MQRankSum=0.096;QD=19.09;ReadPosRankSum=1.684;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2782,312,0 chrV 469145 . T C 2359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=153;Dels=0.00;FS=6.222;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;MQRankSum=-1.470;QD=15.42;ReadPosRankSum=2.385;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2392,282,0 chrV 469150 . T G 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=3.302;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;MQRankSum=0.247;QD=15.44;ReadPosRankSum=1.642;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2411,282,0 chrV 469292 . G A 4048.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.5006;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=23.00;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4048,441,0 chrV 469325 . G A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.01;FS=0.000;HaplotypeScore=20.1584;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=20.59;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,170:175:99:3645,408,0 chrV 469327 . A G 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.715;DP=180;Dels=0.01;FS=1.801;HaplotypeScore=22.1372;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=-0.352;QD=20.13;ReadPosRankSum=3.565;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:5,173:178:99:3624,411,0 chrV 469412 . C T 2183 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=0;QD=19.15;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2216,249,0 chrV 469422 . T C 1714 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.47;MQ0=0;QD=18.04;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1747,201,0 chrV 469423 . T C 1699 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.85;MQ0=0;QD=17.88;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1732,198,0 chrV 469424 . T C 1650 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.85;MQ0=0;QD=17.37;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1683,198,0 chrV 469454 . A G 1856 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;QD=18.02;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1889,216,0 chrV 469975 . C T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3239,354,0 chrV 470193 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3094,351,0 chrV 470268 . C T 3834.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0855;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3834,423,0 chrV 471051 . A G 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.542;QD=21.95;ReadPosRankSum=1.669;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3622,405,0 chrV 471372 . G A 5027.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.8273;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.06;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5027,561,0 chrV 471501 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-0.622;QD=20.91;ReadPosRankSum=1.675;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3785,429,0 chrV 471507 . G A 3714.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=21.22;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3714,408,0 chrV 471549 . C T 2601 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=7.3611;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=17.46;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2634,285,0 chrV 471586 . T C 3660.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.0479;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.89;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3660,426,0 chrV 471618 . T C 3888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=185;Dels=0.00;FS=6.284;HaplotypeScore=13.8090;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.471;QD=21.02;ReadPosRankSum=2.396;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3888,444,0 chrV 471723 . T C 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=163;Dels=0.00;FS=3.201;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=0.372;QD=22.35;ReadPosRankSum=1.690;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3643,420,0 chrV 471807 . C T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.2541;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.79;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3770,423,0 chrV 471885 . A T 6009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.724;DP=258;Dels=0.00;FS=12.967;HaplotypeScore=21.2657;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.786;QD=23.29;ReadPosRankSum=2.879;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:3,255:258:99:6009,660,0 chrV 471936 . G A 4745.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.37;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:4745,522,0 chrV 471939 . G C 4127.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=3.2707;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=16.12;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,249:256:99:4127,486,0 chrV 472051 . C T 6760.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=11.6979;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.97;SB=-3.542e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:6760,727,0 chrV 472093 . C T 6815.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=21.16;SB=-3.787e+03 GT:AD:DP:GQ:PL 1/1:0,322:322:99:6815,739,0 chrV 472109 . T C 6185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.365;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=7.3376;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=0.904;QD=19.27;ReadPosRankSum=0.650;SB=-3.633e+03 GT:AD:DP:GQ:PL 1/1:2,317:321:99:6185,681,0 chrV 472245 . A G 5109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.662;DP=274;Dels=0.00;FS=7.937;HaplotypeScore=18.0048;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-0.329;QD=18.65;ReadPosRankSum=3.799;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:5,268:274:99:5109,594,0 chrV 472446 . G A 1553 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=11.50;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1586,177,0 chrV 472453 . G A 1658 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1278;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=13.06;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1691,189,0 chrV 472577 . C T 3750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.101;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=1.108;QD=21.68;ReadPosRankSum=-0.423;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3750,394,0 chrV 472664 . G A 4457.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=25.04;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4457,474,0 chrV 472738 . T C 3851.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.7090;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=21.63;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3851,432,0 chrV 472753 . A T 3172 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=18.55;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3205,351,0 chrV 472756 . A G 3042 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=17.89;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3075,351,0 chrV 473281 . T C 7132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=354;Dels=0.00;FS=2.982;HaplotypeScore=36.2224;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.627;QD=20.15;ReadPosRankSum=2.338;SB=-3.794e+03 GT:AD:DP:GQ:PL 1/1:2,350:354:99:7132,828,0 chrV 473419 . G A 7166.01 PASS AC=2;AF=1.00;AN=2;DP=347;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.65;SB=-3.855e+03 GT:AD:DP:GQ:PL 1/1:0,345:347:99:7166,810,0 chrV 473455 . C T 7254.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=18.0521;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.98;SB=-4.055e+03 GT:AD:DP:GQ:PL 1/1:0,330:330:99:7254,778,0 chrV 473482 . A G 7173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=331;Dels=0.00;FS=2.915;HaplotypeScore=14.1499;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=1.769;QD=21.67;ReadPosRankSum=2.375;SB=-3.394e+03 GT:AD:DP:GQ:PL 1/1:2,326:331:99:7173,831,0 chrV 473821 . G A 4443.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=22.10;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4443,483,0 chrV 473890 . G C 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.392;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.4869;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.521;QD=14.54;ReadPosRankSum=3.020;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:4,202:208:99:3058,360,0 chrV 473893 . C G 3076 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.01;FS=0.000;HaplotypeScore=10.4303;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=14.58;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,204:209:99:3109,351,0 chrV 473950 . C T 5723.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=20.4465;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=19.80;SB=-3.323e+03 GT:AD:DP:GQ:PL 1/1:0,287:289:99:5723,630,0 chrV 474020 . A G 6503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.706;DP=321;Dels=0.00;FS=19.967;HaplotypeScore=16.0995;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=-0.956;QD=20.26;ReadPosRankSum=3.834;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:5,313:321:99:6503,744,0 chrV 474031 . C T 6213.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=19.91;SB=-2.746e+03 GT:AD:DP:GQ:PL 1/1:0,311:312:99:6213,684,0 chrV 474077 . T C 5997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=306;Dels=0.00;FS=2.375;HaplotypeScore=25.8002;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-0.687;QD=19.60;ReadPosRankSum=3.352;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:4,300:306:99:5997,690,0 chrV 474191 . T C 5998.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=374;Dels=0.00;FS=3.153;HaplotypeScore=22.8554;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-1.189;QD=16.04;ReadPosRankSum=1.676;SB=-4.587e+03 GT:AD:DP:GQ:PL 1/1:1,369:374:99:5998,675,0 chrV 474245 . A G 6751.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=377;Dels=0.00;FS=0.000;HaplotypeScore=17.2596;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=0.308;QD=17.91;ReadPosRankSum=1.723;SB=-4.246e+03 GT:AD:DP:GQ:PL 1/1:1,376:377:99:6751,791,0 chrV 474267 . A G 6976.01 filter AC=2;AF=1.00;AN=2;DP=382;Dels=0.00;FS=0.000;HaplotypeScore=2.7374;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=18.26;SB=-4.543e+03 GT:AD:DP:GQ:PL 1/1:0,379:382:99:6976,795,0 chrV 474268 . T C 7127.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=386;Dels=0.00;FS=3.241;HaplotypeScore=3.5261;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;MQRankSum=-0.251;QD=18.46;ReadPosRankSum=1.714;SB=-4.782e+03 GT:AD:DP:GQ:PL 1/1:1,385:386:99:7127,789,0 chrV 474470 . A G 9126.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=388;Dels=0.00;FS=10.125;HaplotypeScore=15.9169;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.488;QD=23.52;ReadPosRankSum=2.971;SB=-4.608e+03 GT:AD:DP:GQ:PL 1/1:3,383:388:99:9126,1006,0 chrV 474506 . C T 7563.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=30.9758;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.734;QD=20.89;ReadPosRankSum=0.024;SB=-4.283e+03 GT:AD:DP:GQ:PL 1/1:1,360:362:99:7563,823,0 chrV 474569 . G A 5687.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=19.5387;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=17.29;SB=-3.716e+03 GT:AD:DP:GQ:PL 1/1:0,327:329:99:5687,621,0 chrV 474623 . A G 7116.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=364;Dels=0.00;FS=2.958;HaplotypeScore=21.1850;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.352;QD=19.55;ReadPosRankSum=2.436;SB=-3.957e+03 GT:AD:DP:GQ:PL 1/1:2,360:364:99:7116,822,0 chrV 474722 . A G 3949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=252;Dels=0.00;FS=2.568;HaplotypeScore=23.4389;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-1.948;QD=15.67;ReadPosRankSum=2.940;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:3,247:252:99:3949,462,0 chrV 474743 . A G 4279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=246;Dels=0.00;FS=2.650;HaplotypeScore=9.0244;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=1.045;QD=17.39;ReadPosRankSum=2.409;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:2,241:246:99:4279,474,0 chrV 474824 . G C 5743.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=14.2848;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.73;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:0,274:277:99:5743,654,0 chrV 474860 . G A 5926.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=22.2105;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.87;SB=-3.510e+03 GT:AD:DP:GQ:PL 1/1:0,268:271:99:5926,642,0 chrV 475014 . C T 3856.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=21.7080;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.81;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3856,432,0 chrV 475088 . A C 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=234;Dels=0.00;FS=5.769;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.091;QD=17.08;ReadPosRankSum=2.935;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:3,229:234:99:3996,456,0 chrV 475151 . G C 3436.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=16.93;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,197:203:99:3436,396,0 chrV 475154 . G A 3592.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=18.42;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3592,393,0 chrV 475496 . T C 4991.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.88;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:4991,576,0 chrV 475583 . A G 5978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.174;DP=275;Dels=0.00;FS=14.112;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.094;QD=21.74;ReadPosRankSum=3.397;SB=-2.891e+03 GT:AD:DP:GQ:PL 1/1:4,269:275:99:5978,678,0 chrV 475620 . C T 5218.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=16.1928;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.74;SB=-2.868e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5218,570,0 chrV 475649 . C T 4814.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=13.7405;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.78;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4814,531,0 chrV 476027 . T C 3681.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.28;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3681,423,0 chrV 476048 . A G 3622.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.31;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3622,411,0 chrV 476144 . G A 3897.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.66;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3897,426,0 chrV 476183 . A G 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.7387;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.753;QD=20.79;ReadPosRankSum=1.707;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2923,333,0 chrV 476227 . G A 1955 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.58;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1988,219,0 chrV 476296 . A T 2546 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.36;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2579,276,0 chrV 476465 . T C 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.965;QD=23.36;ReadPosRankSum=1.679;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3116,357,0 chrV 476681 . T C 4085.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.34;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4085,465,0 chrV 476809 . G A 4100.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.43;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4100,435,0 chrV 476888 . C T 3309.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.46;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3309,369,0 chrV 476891 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.58;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3264,369,0 chrV 477110 . G A 2740 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=13.7438;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=22.46;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2773,297,0 chrV 477331 . T G 2709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-1.577;QD=19.92;ReadPosRankSum=1.706;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:2742,318,0 chrV 477332 . T C 2881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=2.932;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-1.113;QD=20.88;ReadPosRankSum=2.361;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2914,324,0 chrV 477380 . T C 2554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=148;Dels=0.00;FS=2.995;HaplotypeScore=8.0765;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.477;QD=17.26;ReadPosRankSum=2.149;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2587,311,0 chrV 477413 . G A 2775 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.8254;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.51;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2808,306,0 chrV 477476 . C T 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.014;QD=22.11;ReadPosRankSum=-0.690;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2753,303,0 chrV 477503 . A G 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-1.656;QD=21.27;ReadPosRankSum=1.707;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2947,336,0 chrV 477635 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.5850;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.90;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2770,312,0 chrV 477784 . G A 2279 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.34;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2312,252,0 chrV 477836 . A G 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-1.431;QD=20.71;ReadPosRankSum=1.702;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2415,276,0 chrV 478040 . A C 2467 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=20.39;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2500,282,0 chrV 478049 . G A 2458 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.20;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2491,282,0 chrV 478610 . C T 2234 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2267,249,0 chrV 478997 . T G 2436 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2469,279,0 chrV 479084 . A G 2170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=105;Dels=0.00;FS=3.020;HaplotypeScore=5.9160;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.254;QD=20.67;ReadPosRankSum=2.379;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2203,258,0 chrV 479237 . T C 3100 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.85;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3133,357,0 chrV 479528 . A G 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=119;Dels=0.00;FS=3.010;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=0.382;QD=22.18;ReadPosRankSum=2.326;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2673,303,0 chrV 479546 . A G 2512 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.66;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2545,288,0 chrV 479720 . C T 2856 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=21.16;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2889,321,0 chrV 479721 . A G 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=134;Dels=0.00;FS=7.782;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-0.560;QD=20.57;ReadPosRankSum=2.376;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2789,321,0 chrV 479743 . G A 2710 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.07;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2743,297,0 chrV 479834 . T C 2546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=4.030;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-1.490;QD=19.74;ReadPosRankSum=1.652;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2579,300,0 chrV 479849 . T C 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=134;Dels=0.00;FS=9.096;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.305;QD=20.21;ReadPosRankSum=2.320;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2741,315,0 chrV 480036 . A G 2465 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.43;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2498,297,0 chrV 480365 . A G 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=159;Dels=0.00;FS=3.038;HaplotypeScore=8.2830;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.151;QD=23.38;ReadPosRankSum=2.419;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3718,429,0 chrV 480402 . T C 4065.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.21;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4065,456,0 chrV 480485 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=151;Dels=0.00;FS=7.185;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.769;QD=22.85;ReadPosRankSum=2.383;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:2,146:151:99:3450,393,0 chrV 480557 . C G 3654.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.5612;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.70;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3654,420,0 chrV 480751 . T C 3604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.261;DP=162;Dels=0.00;FS=8.899;HaplotypeScore=16.0259;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.402;QD=22.25;ReadPosRankSum=3.371;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:4,155:162:99:3604,414,0 chrV 481268 . C A 3865.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.34;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,169:173:99:3865,432,0 chrV 481448 . T C 3511.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3511,399,0 chrV 481543 . C T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4999;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.87;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3564,396,0 chrV 481570 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=3.245;HaplotypeScore=4.3460;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.342;QD=21.13;ReadPosRankSum=1.709;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3267,366,0 chrV 481664 . C T 3121 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.0810;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.78;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3154,342,0 chrV 481740 . T C 3972.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.5953;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.57;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3972,435,0 chrV 482159 . A G 5189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.561;DP=247;Dels=0.00;FS=15.504;HaplotypeScore=19.5822;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.991;QD=21.01;ReadPosRankSum=3.803;SB=-2.905e+03 GT:AD:DP:GQ:PL 1/1:5,240:247:99:5189,606,0 chrV 482268 . C T 6860.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=21.0988;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.18;SB=-2.966e+03 GT:AD:DP:GQ:PL 1/1:0,296:296:99:6860,745,0 chrV 482384 . G C 5134.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.32;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5134,597,0 chrV 482408 . A G 5201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-0.539;QD=21.49;ReadPosRankSum=1.718;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5201,576,0 chrV 482461 . C G 5923.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.38;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:0,274:277:99:5923,669,0 chrV 482745 . G A 4601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.0342;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.310;QD=22.33;ReadPosRankSum=-0.161;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4601,490,0 chrV 482896 . G A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.01;FS=0.000;HaplotypeScore=21.6776;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.38;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3445,375,0 chrV 483535 . A T 4327.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.8605;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.32;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4327,480,0 chrV 483728 . C T 5040.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5040,546,0 chrV 483871 . A G 5312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=235;Dels=0.00;FS=5.991;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.688;QD=22.60;ReadPosRankSum=2.902;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:3,232:235:99:5312,603,0 chrV 484002 . T C 4499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.698;DP=228;Dels=0.00;FS=10.261;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.185;QD=19.73;ReadPosRankSum=2.942;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:3,220:228:99:4499,525,0 chrV 484306 . T A 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=134;Dels=0.00;FS=4.837;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.698;QD=19.34;ReadPosRankSum=1.680;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2625,294,0 chrV 484412 . G C 2932 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.1125;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2965,333,0 chrV 484694 . G A 3963.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.14;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3963,450,0 chrV 484910 . A G 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.783;QD=20.21;ReadPosRankSum=1.566;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,145:149:99:3044,351,0 chrV 484935 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=156;Dels=0.00;FS=2.820;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=1.340;QD=21.72;ReadPosRankSum=2.418;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3389,390,0 chrV 485189 . G A 3522.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.64;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3522,387,0 chrV 485599 . T C 3871.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3871,435,0 chrV 485939 . G A 3333.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3333,366,0 chrV 486292 . G A 3140 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3173,348,0 chrV 486330 . A T 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.424;QD=24.60;ReadPosRankSum=1.709;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3714,405,0 chrV 486470 . A G 2686 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2719,312,0 chrV 486812 . A G 2041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=105;Dels=0.00;FS=2.963;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.333;QD=19.44;ReadPosRankSum=2.403;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2074,237,0 chrV 486863 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=22.73;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2715,306,0 chrV 486920 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3032,327,0 chrV 486986 . T A 2684 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.7160;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.18;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2717,309,0 chrV 487436 . T G 1932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=96;Dels=0.00;FS=3.199;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;MQRankSum=0.811;QD=20.12;ReadPosRankSum=1.695;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,93:96:99:1965,222,0 chrV 487480 . C T 1719 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=13.12;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1752,195,0 chrV 487689 . A C 2393 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=40.69;MQ0=0;QD=19.46;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2426,273,0 chrV 487750 . A G 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=33.13;MQ0=0;MQRankSum=1.386;QD=20.39;ReadPosRankSum=1.697;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4077,465,0 chrV 487792 . G C 2139 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=31.44;MQ0=0;QD=19.81;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2172,246,0 chrV 487833 . G T 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;DP=12;Dels=0.00;FS=2.808;HaplotypeScore=14.5277;MLEAC=1;MLEAF=0.500;MQ=26.84;MQ0=0;MQRankSum=0.248;QD=3.00;ReadPosRankSum=1.422;SB=-1.396e+01 GT:AD:DP:GQ:PL 0/1:6,3:12:41:66,0,41 chrV 488007 . C T 22.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.793;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.41;MQ0=26;MQRankSum=2.059;QD=0.49;ReadPosRankSum=0.731;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,2:45:16:52,0,16 chrV 488073 . A C 10.45 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=9.5279;MLEAC=1;MLEAF=0.500;MQ=14.79;MQ0=0;MQRankSum=0.760;QD=0.35;ReadPosRankSum=-0.069;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,3:30:18:40,0,18 chrV 488195 . G C 419 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.53;MQ0=0;QD=5.37;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:51:452,51,0 chrV 488211 . T G 1033 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.21;MQ0=0;QD=10.23;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1066,120,0 chrV 488214 . A G 1068 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.59;MQ0=0;QD=10.47;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1101,129,0 chrV 488358 . T C 2263 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;QD=21.76;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2296,261,0 chrV 488527 . T G 2155 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=21.77;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2188,243,0 chrV 488534 . A G 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=3.057;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.317;QD=19.96;ReadPosRankSum=1.620;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,92:95:99:1929,216,0 chrV 488644 . C T 1989 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=25.50;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2022,219,0 chrV 488650 . T C 1993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-1.310;QD=24.30;ReadPosRankSum=1.225;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:2026,219,0 chrV 488835 . G A 2334 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.88;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2367,255,0 chrV 488899 . G A 2289 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.43;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2322,255,0 chrV 489026 . A G 4505.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.10;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,191:195:99:4505,516,0 chrV 489617 . G C 3080 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=16.3840;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.40;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3113,360,0 chrV 489658 . C G 2901 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.7176;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.15;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2934,339,0 chrV 489814 . A G 3584.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=21.59;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3584,408,0 chrV 489819 . C T 3670.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=21.59;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3670,411,0 chrV 489879 . C T 2728 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=17.27;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2761,303,0 chrV 489888 . G A 2640 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=18.08;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2673,288,0 chrV 489897 . T C 2721 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=17.78;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2754,303,0 chrV 490102 . G A 5990.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=11.6452;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=22.27;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5990,690,0 chrV 490207 . A G 5204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=273;Dels=0.00;FS=3.793;HaplotypeScore=12.4368;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=0.539;QD=19.06;ReadPosRankSum=1.719;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:1,272:273:99:5204,612,0 chrV 490291 . G A 7466.01 filter AC=2;AF=1.00;AN=2;DP=406;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=18.39;SB=-5.165e+03 GT:AD:DP:GQ:PL 1/1:0,406:406:99:7466,820,0 chrV 490294 . A G 7287.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=418;Dels=0.00;FS=3.010;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;MQRankSum=1.463;QD=17.43;ReadPosRankSum=2.438;SB=-5.282e+03 GT:AD:DP:GQ:PL 1/1:2,413:418:99:7287,816,0 chrV 490306 . A G 7399.01 filter AC=2;AF=1.00;AN=2;DP=401;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=18.45;SB=-4.991e+03 GT:AD:DP:GQ:PL 1/1:0,401:401:99:7399,828,0 chrV 490456 . A G 6037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.261;DP=291;Dels=0.00;FS=2.872;HaplotypeScore=17.0717;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=0.670;QD=20.75;ReadPosRankSum=0.291;SB=-2.933e+03 GT:AD:DP:GQ:PL 1/1:2,289:291:99:6037,673,0 chrV 490516 . A C 6627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=22.9193;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=1.323;QD=20.97;ReadPosRankSum=1.699;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:1,312:316:99:6627,776,0 chrV 490694 . T C 4307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=192;Dels=0.00;FS=9.058;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.160;QD=22.43;ReadPosRankSum=2.424;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4307,495,0 chrV 491135 . G A 4207.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4207,477,0 chrV 491222 . G A 3529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=3.480;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-0.466;QD=22.20;ReadPosRankSum=1.532;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,155:159:99:3529,399,0 chrV 491262 . T C 2930 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.0911;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=18.90;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2963,345,0 chrV 491274 . T C 2737 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.27;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2770,324,0 chrV 491424 . G A 3133 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.75;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3166,345,0 chrV 491506 . C T 2526 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.37;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2559,279,0 chrV 491522 . C T 3127 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5230;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.27;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3160,354,0 chrV 491556 . T C 3008 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=18.57;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3041,339,0 chrV 491806 . T C 2787 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.3426;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.60;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,124:129:99:2820,327,0 chrV 492048 . T C 1599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.999;DP=110;Dels=0.00;FS=33.731;HaplotypeScore=16.3011;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=3.133;QD=14.54;ReadPosRankSum=1.959;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:7,102:110:99:1632,186,0 chrV 492095 . G T 2140 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.32;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2173,234,0 chrV 492163 . A G 1054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=56;Dels=0.00;FS=4.393;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=0.094;QD=18.82;ReadPosRankSum=1.669;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1087,120,0 chrV 492200 . T C 918 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=15.30;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:951,111,0 chrV 492293 . A G 2303 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=13.3522;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;QD=21.73;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2336,276,0 chrV 498178 . G A 449 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=3;QD=7.36;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:3,58:61:54:482,54,0 chrV 498203 . G A 413 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=2;QD=6.66;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:1,61:62:48:446,48,0 chrV 498463 . T C 157.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.538;QD=9.27;ReadPosRankSum=1.614;SB=-2.911e+00 GT:AD:DP:GQ:PL 1/1:3,13:17:2:187,2,0 chrV 498517 . G A 142.06 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;QD=17.76;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:21:175,21,0 chrV 498530 . A G 375 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.39;MQ0=0;QD=18.75;SB=-6.648e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:48:408,48,0 chrV 498534 . G A 473 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.93;MQ0=0;QD=18.92;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:54:506,54,0 chrV 498571 . A G 800 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=17.02;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:833,96,0 chrV 498634 . C T 710 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=22.19;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:78:743,78,0 chrV 498872 . C T 2422 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=26.62;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2455,267,0 chrV 498934 . G A 1665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=65.1873;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;MQRankSum=-0.282;QD=19.14;ReadPosRankSum=1.571;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1698,195,0 chrV 498959 . T C 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=94;Dels=0.00;FS=7.268;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;MQRankSum=-1.821;QD=19.33;ReadPosRankSum=2.371;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1850,189,0 chrV 499228 . T C 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=149;Dels=0.00;FS=2.814;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.324;QD=22.70;ReadPosRankSum=2.416;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3382,384,0 chrV 499333 . T G 3963.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.02;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3963,447,0 chrV 499353 . T G 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=206;Dels=0.00;FS=2.961;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=-0.391;QD=20.21;ReadPosRankSum=2.377;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:2,202:206:99:4163,468,0 chrV 499401 . A T 5544.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.83;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5544,609,0 chrV 499569 . T C 3891.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.7074;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=18.98;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:3891,438,0 chrV 499617 . A G 4191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=15.0508;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.143;QD=17.99;ReadPosRankSum=2.418;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:4191,483,0 chrV 499824 . G A 3031 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.32;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3064,336,0 chrV 499904 . G A 3702.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3702,405,0 chrV 500489 . A G 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=115;Dels=0.00;FS=2.974;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.530;QD=22.23;ReadPosRankSum=2.407;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2589,291,0 chrV 500567 . G T 2528 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.85;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2561,285,0 chrV 500606 . T A 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.132;QD=21.42;ReadPosRankSum=2.415;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3053,345,0 chrV 500783 . G T 3847.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.1121;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.98;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3847,420,0 chrV 500798 . T C 3620.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.11;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3620,417,0 chrV 500804 . G A 3770.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.53;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:3770,414,0 chrV 500850 . A G 3774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=0.823;QD=18.32;ReadPosRankSum=1.715;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:1,201:206:99:3774,429,0 chrV 500985 . T C 4307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.276;DP=213;Dels=0.00;FS=12.860;HaplotypeScore=21.1850;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.784;QD=20.22;ReadPosRankSum=3.385;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:4,204:213:99:4307,492,0 chrV 501338 . C T 2729 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.8697;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.83;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2762,297,0 chrV 501719 . A T 3851.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.7263;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3851,429,0 chrV 501812 . C T 4861.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.04;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4861,525,0 chrV 501989 . T G 5077.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.9987;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.07;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5077,576,0 chrV 502169 . T G 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.703;DP=160;Dels=0.00;FS=11.775;HaplotypeScore=22.0831;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.589;QD=20.77;ReadPosRankSum=2.956;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:3,156:160:99:3323,381,0 chrV 502277 . G A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0209;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.27;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3318,366,0 chrV 502307 . A T 3287.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.63;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3287,360,0 chrV 502591 . T C 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.3877;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.460;QD=20.44;ReadPosRankSum=1.664;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3161,363,0 chrV 502670 . C T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.37;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4060,447,0 chrV 502906 . A G 3531.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.88;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3531,405,0 chrV 502911 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=18.38;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3401,390,0 chrV 502995 . T A 3957.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.4271;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.87;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3957,426,0 chrV 503237 . T C 5499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=255;Dels=0.00;FS=5.472;HaplotypeScore=15.9402;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.237;QD=21.56;ReadPosRankSum=2.972;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:3,251:255:99:5499,639,0 chrV 503411 . A G 5654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=281;Dels=0.00;FS=2.950;HaplotypeScore=17.0166;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.356;QD=20.12;ReadPosRankSum=2.379;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:2,277:281:99:5654,665,0 chrV 503840 . T C 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=4.060;HaplotypeScore=9.7913;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=0.436;QD=20.48;ReadPosRankSum=1.690;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,162:166:99:3400,399,0 chrV 503864 . T C 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=149;Dels=0.00;FS=7.379;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=0.421;QD=20.40;ReadPosRankSum=2.384;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3073,351,0 chrV 503909 . T A 2222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=16.0869;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.275;QD=17.63;ReadPosRankSum=1.650;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2255,255,0 chrV 504008 . G A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=24.21;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3486,384,0 chrV 504037 . A T 3587.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=22.56;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3587,387,0 chrV 504050 . C T 3156 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=21.18;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3189,345,0 chrV 504185 . G A 4836.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=21.40;SB=-2.894e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4836,522,0 chrV 504211 . A C 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=224;Dels=0.00;FS=10.015;HaplotypeScore=5.0025;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=-0.368;QD=17.87;ReadPosRankSum=2.968;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:3,218:224:99:4003,444,0 chrV 504218 . A G 3933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=218;Dels=0.00;FS=3.680;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=-0.088;QD=18.04;ReadPosRankSum=1.716;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:3933,441,0 chrV 504280 . G C 3276.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=18.00;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3276,381,0 chrV 504319 . C A 2885 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;QD=17.70;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2918,324,0 chrV 504324 . T C 2544 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=16.41;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2577,309,0 chrV 504333 . G A 2470 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=16.36;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2503,273,0 chrV 504352 . C T 2918 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=17.27;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2951,324,0 chrV 504566 . C T 3835.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=22.83;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3835,429,0 chrV 504586 . C T 3542.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.68;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3542,387,0 chrV 504601 . T A 3668.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.1569;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.01;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3668,408,0 chrV 504710 . T C 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=193;Dels=0.00;FS=6.511;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=-1.030;QD=17.96;ReadPosRankSum=2.386;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:3466,390,0 chrV 504711 . A T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=18.70;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3571,393,0 chrV 504934 . C T 4214.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.66;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4214,471,0 chrV 505198 . G A 2946 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.82;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2979,321,0 chrV 505221 . C A 3073 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.90;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3106,351,0 chrV 505472 . G A 4343.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.82;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4343,477,0 chrV 505580 . T C 4171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=206;Dels=0.00;FS=8.385;HaplotypeScore=15.0602;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.077;QD=20.25;ReadPosRankSum=2.413;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:2,202:206:99:4171,489,0 chrV 505622 . T C 3865.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.1172;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.34;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3865,456,0 chrV 506537 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.023;DP=160;Dels=0.00;FS=2.825;HaplotypeScore=16.9625;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.651;QD=21.26;ReadPosRankSum=1.761;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:2,155:160:99:3401,371,0 chrV 506870 . G A 4765.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.2593;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=25.21;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4765,510,0 chrV 507153 . C A 3003 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.30;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3036,333,0 chrV 508179 . A G 3798.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3798,438,0 chrV 508274 . T C 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.688;QD=23.36;ReadPosRankSum=1.685;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3457,399,0 chrV 508409 . C T 4036.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.2469;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.20;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4036,450,0 chrV 508494 . T C 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=3.394;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.951;QD=20.46;ReadPosRankSum=1.683;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2959,333,0 chrV 508532 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=166;Dels=0.00;FS=2.636;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.603;QD=19.45;ReadPosRankSum=2.360;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3261,375,0 chrV 508586 . C T 3180 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9356;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.08;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3213,351,0 chrV 508632 . C G 2982 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7722;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.25;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3015,342,0 chrV 508911 . A G 3395.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.25;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3395,387,0 chrV 509075 . T C 3439.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=21.23;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3439,396,0 chrV 509188 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.4946;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3153,342,0 chrV 509583 . A G 4629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.566;QD=22.25;ReadPosRankSum=1.715;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4629,531,0 chrV 509654 . G A 4283.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.2917;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.31;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4283,471,0 chrV 509902 . G T 3137 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.07;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3170,348,0 chrV 509938 . C T 2981 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.4927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3014,342,0 chrV 510112 . G A 1956 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.26;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1989,219,0 chrV 510191 . G A 1649 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1682,186,0 chrV 511431 . T C 4550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=209;Dels=0.00;FS=3.247;HaplotypeScore=13.5468;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.393;QD=21.77;ReadPosRankSum=1.682;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4550,534,0 chrV 511509 . T C 5150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.149;QD=23.30;ReadPosRankSum=1.716;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:5150,591,0 chrV 511653 . C T 4309.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.82;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4309,477,0 chrV 511800 . T C 4334.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.1510;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.79;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,215:219:99:4334,507,0 chrV 511824 . C T 4200.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.8311;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.32;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4200,459,0 chrV 511858 . G A 4138.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.59;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4138,453,0 chrV 512058 . C T 2504 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.40;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2537,276,0 chrV 512130 . C T 2503 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2536,279,0 chrV 512508 . C A 2955 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.73;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2988,324,0 chrV 512664 . C G 3045 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.91;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3078,357,0 chrV 513154 . G A 4726.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.5386;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.40;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4726,528,0 chrV 513385 . G A 3673.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.4776;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.99;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3673,399,0 chrV 513424 . A T 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.005;DP=177;Dels=0.00;FS=7.849;HaplotypeScore=15.1121;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.396;QD=20.82;ReadPosRankSum=2.408;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3686,411,0 chrV 513469 . A G 3713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=177;Dels=0.00;FS=3.655;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.816;QD=20.98;ReadPosRankSum=1.712;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:3713,429,0 chrV 513481 . G A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.45;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3749,399,0 chrV 513508 . G C 3024 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.16;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3057,348,0 chrV 513778 . C T 4675.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.10;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4675,525,0 chrV 513941 . G A 4523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.560;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.0587;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.456;QD=22.50;ReadPosRankSum=-0.129;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4523,475,0 chrV 514288 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3456,396,0 chrV 514323 . G A 3418.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3418,369,0 chrV 514549 . T C 3875.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.8515;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.40;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3875,444,0 chrV 514855 . A G 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.135;DP=156;Dels=0.00;FS=2.834;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.276;QD=23.06;ReadPosRankSum=2.418;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3598,402,0 chrV 515086 . T G 2055 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.10;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2088,237,0 chrV 515176 . A G 2799 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0625;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.70;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2832,324,0 chrV 515321 . C A 3476.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.65;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3476,381,0 chrV 515785 . T C 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=148;Dels=0.00;FS=3.011;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.109;QD=21.55;ReadPosRankSum=2.399;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3222,369,0 chrV 515827 . A G 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.892;QD=22.90;ReadPosRankSum=1.680;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3079,342,0 chrV 515965 . T C 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=179;Dels=0.00;FS=2.859;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.304;QD=23.18;ReadPosRankSum=2.422;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:4149,471,0 chrV 516235 . A T 4751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=217;Dels=0.00;FS=2.891;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.107;QD=21.89;ReadPosRankSum=2.427;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:4751,508,0 chrV 517529 . T C 2183 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=93.2772;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=15.59;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2216,261,0 chrV 518044 . G A 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.8770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.773;QD=22.82;ReadPosRankSum=-0.213;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2999,314,0 chrV 518464 . G A 3957.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.69;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3957,432,0 chrV 519649 . C T 4560.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=22.24;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4560,507,0 chrV 519704 . C A 3716.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.86;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3716,402,0 chrV 519715 . G A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=20.82;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3561,399,0 chrV 520101 . A T 4456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=190;Dels=0.00;FS=6.613;HaplotypeScore=15.7029;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.286;QD=23.45;ReadPosRankSum=2.424;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4456,486,0 chrV 520470 . G T 3695.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.8944;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.81;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3695,402,0 chrV 520557 . C T 2978 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.06;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3011,327,0 chrV 520915 . A T 1496 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1529,168,0 chrV 521007 . T A 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.653;QD=25.89;ReadPosRankSum=1.706;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3391,366,0 chrV 521308 . T C 2081 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.14;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2114,243,0 chrV 521361 . G T 2667 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.81;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2700,291,0 chrV 521398 . A G 2111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.371;QD=21.54;ReadPosRankSum=1.624;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,95:98:99:2144,240,0 chrV 521557 . T A 2815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.0650;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.477;QD=23.07;ReadPosRankSum=1.704;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2848,321,0 chrV 521676 . A G 2764 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.11;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2797,318,0 chrV 521706 . G A 2787 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.7448;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.94;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2820,306,0 chrV 522421 . A G 5197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=233;Dels=0.00;FS=3.588;HaplotypeScore=15.1362;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.468;QD=22.30;ReadPosRankSum=1.717;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:5197,600,0 chrV 522484 . A G 4823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=225;Dels=0.00;FS=2.861;HaplotypeScore=12.7854;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-0.271;QD=21.44;ReadPosRankSum=2.416;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:2,221:225:99:4823,534,0 chrV 522683 . C A 3061 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=19.01;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3094,345,0 chrV 522685 . T C 2922 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=17.82;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2955,336,0 chrV 522702 . G A 2852 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=1.7172;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=16.68;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:2885,315,0 chrV 522704 . A T 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.947;DP=171;Dels=0.00;FS=2.982;HaplotypeScore=1.7172;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;MQRankSum=0.869;QD=16.61;ReadPosRankSum=0.855;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:2873,312,0 chrV 522739 . A C 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.752;DP=171;Dels=0.01;FS=8.020;HaplotypeScore=7.6820;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=-1.755;QD=15.13;ReadPosRankSum=3.706;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:5,163:169:99:2620,309,0 chrV 523179 . A G 2307 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=24.03;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2340,261,0 chrV 523260 . C A 3483.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.6225;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.76;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3483,384,0 chrV 523592 . A G 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.428;QD=22.50;ReadPosRankSum=1.671;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3847,444,0 chrV 523683 . T C 3117 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3150,354,0 chrV 524101 . A T 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.0960;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.595;QD=21.43;ReadPosRankSum=1.650;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2754,309,0 chrV 524394 . G A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.64;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3577,387,0 chrV 524877 . G A 3151 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.6853;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3184,348,0 chrV 524961 . C T 4140.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4140,447,0 chrV 525075 . G A 4448.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4448,504,0 chrV 525282 . A G 3960.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.2338;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:3960,441,0 chrV 525399 . C T 4310.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.63;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4310,468,0 chrV 525645 . G A 3540.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3540,381,0 chrV 526712 . A T 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=105;Dels=0.03;FS=11.434;HaplotypeScore=10.3762;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;MQRankSum=0.079;QD=20.94;ReadPosRankSum=2.911;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:3,99:102:99:2232,243,0 chrV 526956 . T C 1530 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1563,180,0 chrV 527192 . T C 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=141;Dels=0.00;FS=2.650;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.340;QD=24.13;ReadPosRankSum=2.362;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3403,387,0 chrV 527435 . C T 3875.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.5514;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3875,423,0 chrV 527627 . G A 2620 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.48;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2653,294,0 chrV 529325 . G A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.4524;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.56;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3385,369,0 chrV 529484 . G T 2445 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.1135;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2478,267,0 chrV 529707 . T G 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.866;QD=22.69;ReadPosRankSum=1.685;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3358,396,0 chrV 530063 . C T 3514.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.6410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3514,393,0 chrV 530348 . C T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3764,426,0 chrV 530663 . T C 4288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=189;Dels=0.00;FS=3.300;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.074;QD=22.69;ReadPosRankSum=1.676;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:1,185:189:99:4288,477,0 chrV 530754 . G A 4172.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.9130;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.54;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4172,456,0 chrV 531187 . A G 3666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=172;Dels=0.00;FS=5.702;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.982;QD=21.31;ReadPosRankSum=2.959;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:3,167:172:99:3666,408,0 chrV 531300 . T A 4061.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.01;FS=0.000;HaplotypeScore=6.7882;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.44;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4061,453,0 chrV 531723 . T A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3414,372,0 chrV 531999 . T A 2279 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2312,255,0 chrV 532728 . T C 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=179;Dels=0.00;FS=3.210;HaplotypeScore=10.3300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.156;QD=22.02;ReadPosRankSum=1.693;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3942,447,0 chrV 533214 . C T 4537.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.9533;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.80;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4537,504,0 chrV 533244 . C A 4455.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.57;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4455,495,0 chrV 533502 . T G 4246.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.71;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4246,477,0 chrV 533726 . T A 4634.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=19.7895;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4634,504,0 chrV 534290 . A G 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.433;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.5613;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.336;QD=21.26;ReadPosRankSum=1.657;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3009,333,0 chrV 534807 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.98;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2407,267,0 chrV 535209 . T C 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=140;Dels=0.00;FS=2.879;HaplotypeScore=6.6104;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.876;QD=21.34;ReadPosRankSum=2.397;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:3020,339,0 chrV 535342 . T C 4155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=181;Dels=0.00;FS=2.683;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.798;QD=22.96;ReadPosRankSum=2.395;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4155,471,0 chrV 535431 . T A 3787.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.68;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3787,414,0 chrV 535583 . A G 3860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=179;Dels=0.00;FS=2.975;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.501;QD=21.56;ReadPosRankSum=2.381;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3860,438,0 chrV 535636 . T A 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=159;Dels=0.00;FS=10.795;HaplotypeScore=11.9110;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.006;QD=21.55;ReadPosRankSum=2.817;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:3427,381,0 chrV 535680 . G A 3166 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.25;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3199,345,0 chrV 536075 . C T 3492.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.3048;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.97;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3492,381,0 chrV 536254 . T A 3715.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.23;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3715,408,0 chrV 536255 . T G 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.019;QD=20.97;ReadPosRankSum=1.692;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3670,408,0 chrV 536413 . G A 6373.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=15.0215;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.23;SB=-3.316e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:6373,705,0 chrV 536698 . C T 3850.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.48;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3850,435,0 chrV 536714 . T C 4004.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=20.22;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4004,450,0 chrV 536854 . T C 3750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=171;Dels=0.00;FS=6.309;HaplotypeScore=13.5453;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.051;QD=21.93;ReadPosRankSum=2.406;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3750,429,0 chrV 537238 . G A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.12;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3376,375,0 chrV 537264 . C T 2922 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.97;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2955,324,0 chrV 537307 . C T 3042 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.42;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3075,348,0 chrV 537709 . G C 4116.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.12;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4116,465,0 chrV 537801 . A C 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=135;Dels=0.00;FS=4.195;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.259;QD=21.88;ReadPosRankSum=1.706;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2987,342,0 chrV 538885 . G C 4052.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.14;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4052,450,0 chrV 538899 . T C 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=182;Dels=0.00;FS=11.136;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=1.260;QD=21.01;ReadPosRankSum=2.962;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:3824,441,0 chrV 538976 . C T 3666.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.50;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3666,402,0 chrV 539053 . G C 3562.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.0034;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.59;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3562,402,0 chrV 539462 . T G 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.295;DP=161;Dels=0.00;FS=12.885;HaplotypeScore=19.6470;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.694;QD=21.20;ReadPosRankSum=3.404;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:4,156:161:99:3413,396,0 chrV 540205 . T C 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.128;QD=23.40;ReadPosRankSum=1.680;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3122,357,0 chrV 540352 . A G 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=158;Dels=0.00;FS=3.474;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.789;QD=21.40;ReadPosRankSum=0.153;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3381,378,0 chrV 540409 . C A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.1430;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3436,372,0 chrV 541194 . T C 2806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=143;Dels=0.00;FS=7.176;HaplotypeScore=14.5447;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.212;QD=19.62;ReadPosRankSum=2.397;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:2839,327,0 chrV 541501 . C T 1804 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=16.9336;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=14.09;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:1837,207,0 chrV 541518 . T C 1398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.385;DP=147;Dels=0.00;FS=20.663;HaplotypeScore=6.0716;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-0.392;QD=9.51;ReadPosRankSum=2.665;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:6,139:147:99:1431,171,0 chrV 541873 . G A 4680.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.05;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4680,501,0 chrV 541980 . C T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3446,378,0 chrV 542225 . G A 2635 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.72;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2668,294,0 chrV 542331 . C A 2860 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2893,318,0 chrV 542582 . A G 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=174;Dels=0.00;FS=3.215;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.652;QD=22.79;ReadPosRankSum=1.712;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3965,456,0 chrV 542706 . G C 3826.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=20.35;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3826,432,0 chrV 542715 . C G 3822.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=19.50;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3822,429,0 chrV 542721 . T A 3590.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=18.99;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3590,396,0 chrV 542730 . G A 3335.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.8077;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=17.65;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3335,366,0 chrV 542808 . T A 3435.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.02;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3435,387,0 chrV 542893 . A G 3598.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.6629;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.21;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3598,417,0 chrV 542939 . G A 3139 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.4675;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.52;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3172,351,0 chrV 542994 . G A 3086 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=18.82;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3119,354,0 chrV 543054 . A G 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=159;Dels=0.00;FS=6.276;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.055;QD=22.38;ReadPosRankSum=2.355;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:2,154:159:99:3559,399,0 chrV 543103 . T C 3454.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3454,381,0 chrV 543417 . C T 2664 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.44;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2697,291,0 chrV 543765 . C T 2954 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.9324;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.38;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2987,327,0 chrV 543969 . G T 3002 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.85;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3035,333,0 chrV 543977 . A G 2907 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.33;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2940,339,0 chrV 544042 . G A 3351.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.1100;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.19;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3351,381,0 chrV 544279 . C T 4366.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.09;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4366,471,0 chrV 544296 . A G 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=211;Dels=0.00;FS=7.332;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=0.401;QD=20.01;ReadPosRankSum=2.356;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:4223,483,0 chrV 545025 . G T 4172.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=22.67;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4172,456,0 chrV 545109 . A G 4791.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.49;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4791,549,0 chrV 545266 . C G 1342 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=12.90;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1375,156,0 chrV 545269 . T C 1440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=5.189;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-1.319;QD=13.21;ReadPosRankSum=1.383;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1473,171,0 chrV 545526 . A C 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.743;DP=140;Dels=0.00;FS=6.172;HaplotypeScore=9.4213;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.713;QD=21.79;ReadPosRankSum=1.831;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:3,134:140:99:3084,351,0 chrV 545850 . G A 4120.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.6737;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=20.00;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4120,450,0 chrV 545863 . T C 3610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.312;DP=201;Dels=0.00;FS=16.881;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-0.829;QD=17.96;ReadPosRankSum=3.417;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:4,197:201:99:3610,429,0 chrV 546069 . A C 4076.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.52;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4076,459,0 chrV 546108 . C T 3895.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.0298;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.64;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3895,426,0 chrV 546141 . T A 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.6084;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.182;QD=20.86;ReadPosRankSum=1.714;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3964,447,0 chrV 546329 . C T 2699 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.76;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2732,297,0 chrV 546390 . C T 3078 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=18.32;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3111,345,0 chrV 546421 . T C 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=141;Dels=0.00;FS=8.068;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.430;QD=15.62;ReadPosRankSum=1.708;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2235,267,0 chrV 546436 . G A 2066 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.0829;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=16.40;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2099,231,0 chrV 546545 . T C 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.587;QD=22.83;ReadPosRankSum=2.412;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:2,130:133:99:3070,360,0 chrV 546721 . T C 4033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=183;Dels=0.00;FS=2.965;HaplotypeScore=10.5383;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.752;QD=22.04;ReadPosRankSum=2.423;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4033,468,0 chrV 546766 . T G 5083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=210;Dels=0.00;FS=3.028;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.579;QD=24.20;ReadPosRankSum=2.379;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:5083,570,0 chrV 546932 . C T 4708.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4708,510,0 chrV 547317 . T C 4819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=226;Dels=0.00;FS=4.733;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.598;QD=21.32;ReadPosRankSum=1.686;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4819,567,0 chrV 547377 . G C 4848.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=12.9745;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.28;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:4848,572,0 chrV 547434 . G A 4520.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=18.3792;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.73;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4520,495,0 chrV 548061 . T C 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=169;Dels=0.00;FS=6.571;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=1.629;QD=21.05;ReadPosRankSum=1.711;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3557,396,0 chrV 548298 . A G 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=105;Dels=0.00;FS=6.317;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-1.981;QD=20.62;ReadPosRankSum=2.309;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2198,243,0 chrV 548318 . G A 2064 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=20.85;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2097,228,0 chrV 548325 . A G 2201 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.57;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2234,246,0 chrV 548345 . A G 2428 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.74;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2461,276,0 chrV 548562 . A T 2136 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.47;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2169,246,0 chrV 549585 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=19.77;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2129,228,0 chrV 549589 . T A 2087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=3.811;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;MQRankSum=-0.635;QD=20.66;ReadPosRankSum=1.698;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2120,228,0 chrV 549631 . A G 2021 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.25;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2054,243,0 chrV 549645 . T C 2248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=1.009;QD=19.55;ReadPosRankSum=1.642;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2281,261,0 chrV 549690 . A C 2522 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.32;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2555,291,0 chrV 550011 . C T 4055.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.2308;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.28;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4055,438,0 chrV 550834 . C T 2344 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.98;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2377,255,0 chrV 550949 . C A 3977.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.26;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3977,447,0 chrV 551107 . T G 1875 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.1842;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=13.20;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1908,216,0 chrV 551114 . C T 1927 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=13.29;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:1960,219,0 chrV 551411 . T C 4104.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.06;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4104,480,0 chrV 551830 . C T 3556.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.6927;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.92;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3556,396,0 chrV 553150 . A G 2388 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.53;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2421,270,0 chrV 553226 . T C 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=102;Dels=0.00;FS=6.821;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.355;QD=22.83;ReadPosRankSum=1.698;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2362,270,0 chrV 553411 . G A 2426 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.67;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2459,264,0 chrV 553849 . C T 4161.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.91;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4161,456,0 chrV 555089 . A T 4095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=4.285;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.568;QD=24.23;ReadPosRankSum=1.691;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4095,444,0 chrV 555123 . C A 3599.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.22;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3599,393,0 chrV 555234 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.82;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3011,327,0 chrV 555337 . T C 1633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.179;DP=101;Dels=0.00;FS=3.054;HaplotypeScore=24.6055;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.365;QD=16.17;ReadPosRankSum=2.396;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:2,92:101:99:1666,192,0 chrV 555415 . A T 1796 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1829,198,0 chrV 555528 . T C 1546 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.82;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1579,186,0 chrV 555535 . T C 1567 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.62;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1600,180,0 chrV 555788 . G C 3373.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.59;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,138:143:99:3373,393,0 chrV 555914 . T C 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.290;DP=175;Dels=0.00;FS=8.111;HaplotypeScore=19.1263;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.534;QD=22.94;ReadPosRankSum=3.360;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:4,171:175:99:4014,453,0 chrV 555951 . C T 4554.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.1936;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.89;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4554,498,0 chrV 556125 . G T 4115.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4115,444,0 chrV 556205 . A C 4491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.266;QD=23.27;ReadPosRankSum=2.424;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4491,495,0 chrV 556281 . G A 2923 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2956,318,0 chrV 556662 . C T 3999.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.61;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3999,438,0 chrV 556791 . G A 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.201;QD=21.96;ReadPosRankSum=0.201;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3996,450,0 chrV 557076 . T C 2975 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.56;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3008,345,0 chrV 557148 . A G 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.2027;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.709;QD=21.57;ReadPosRankSum=1.709;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3300,381,0 chrV 557265 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.51;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3136,342,0 chrV 557316 . A C 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=133;Dels=0.00;FS=3.581;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-0.533;QD=21.35;ReadPosRankSum=1.679;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,129:133:99:2872,321,0 chrV 557520 . T G 4030.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.0182;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=19.38;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4030,453,0 chrV 557523 . A G 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=202;Dels=0.00;FS=9.079;HaplotypeScore=8.2295;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.470;QD=18.88;ReadPosRankSum=2.376;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:3813,435,0 chrV 557574 . G C 2911 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=16.08;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:2944,342,0 chrV 557616 . C T 3873.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.5531;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.17;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3873,441,0 chrV 557805 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.0828;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.407;QD=21.55;ReadPosRankSum=1.709;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3269,381,0 chrV 557877 . T C 3592.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0509;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.32;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3592,402,0 chrV 558046 . G A 3917.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.33;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3917,429,0 chrV 558441 . T A 3595.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3595,390,0 chrV 558849 . C T 2346 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2379,267,0 chrV 559099 . A G 4126.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.1426;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.63;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4126,480,0 chrV 559384 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.4198;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=23.46;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3800,408,0 chrV 559558 . C T 3137 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3170,351,0 chrV 559600 . G A 3486.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.3075;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.35;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3486,390,0 chrV 559693 . G T 2841 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.04;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2874,312,0 chrV 559696 . T C 2665 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=19.17;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2698,312,0 chrV 559831 . T C 3738.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.73;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3738,426,0 chrV 559862 . T C 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=3.212;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.650;QD=21.99;ReadPosRankSum=1.712;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3893,441,0 chrV 560686 . A G 3634.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.0976;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.50;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3634,414,0 chrV 560715 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=162;Dels=0.00;FS=7.450;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-1.904;QD=20.45;ReadPosRankSum=2.268;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3313,372,0 chrV 560761 . C G 4242.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.1982;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.68;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:4242,489,0 chrV 561858 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.8308;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.24;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2171,240,0 chrV 561967 . C T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.8987;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.94;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3328,366,0 chrV 562315 . T C 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-0.298;QD=19.51;ReadPosRankSum=1.710;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3115,360,0 chrV 562557 . T C 4633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.344;DP=254;Dels=0.00;FS=8.161;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.417;QD=18.24;ReadPosRankSum=3.185;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:4,249:254:99:4633,512,0 chrV 562559 . C T 4837.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.01;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=18.97;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:4837,531,0 chrV 562933 . G A 3151 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=24.05;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3184,345,0 chrV 562999 . A G 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.254;QD=17.31;ReadPosRankSum=1.518;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2024,237,0 chrV 563000 . G A 2157 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=19.09;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2190,240,0 chrV 563066 . A G 2111 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.10;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2144,240,0 chrV 563222 . G A 2281 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.04;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2314,252,0 chrV 563358 . G T 2527 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.36;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2560,276,0 chrV 563414 . C T 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;DP=104;Dels=0.00;FS=3.181;HaplotypeScore=7.3663;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.333;QD=21.68;ReadPosRankSum=0.633;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2288,239,0 chrV 563448 . T C 2574 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2607,297,0 chrV 563513 . A G 2482 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.96;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2515,288,0 chrV 564052 . T C 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-0.783;QD=19.67;ReadPosRankSum=1.708;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2925,339,0 chrV 564065 . A G 2765 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.2330;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=19.20;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2798,321,0 chrV 564381 . A G 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=135;Dels=0.00;FS=2.654;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.191;QD=19.81;ReadPosRankSum=2.359;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2707,315,0 chrV 564397 . C T 2860 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.00;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2893,318,0 chrV 564617 . G C 1029 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=19.42;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1062,123,0 chrV 566370 . C T 8337.01 PASS AC=2;AF=1.00;AN=2;DP=359;Dels=0.00;FS=0.000;HaplotypeScore=13.3347;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.22;SB=-3.435e+03 GT:AD:DP:GQ:PL 1/1:0,358:359:99:8337,901,0 chrV 566726 . T C 459.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.807;DP=250;Dels=0.01;FS=135.179;HaplotypeScore=36.7278;MLEAC=1;MLEAF=0.500;MQ=54.25;MQ0=0;MQRankSum=-10.550;QD=1.84;ReadPosRankSum=-4.558;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:197,51:248:99:489,0,3768 chrV 566759 . C A 2764.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.999;DP=298;Dels=0.00;FS=205.196;HaplotypeScore=25.3087;MLEAC=1;MLEAF=0.500;MQ=47.42;MQ0=0;MQRankSum=-13.755;QD=9.28;ReadPosRankSum=3.439;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:156,135:298:99:2794,0,2746 chrV 566778 . A T 3748.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166;DP=360;Dels=0.00;FS=182.295;HaplotypeScore=35.1111;MLEAC=1;MLEAF=0.500;MQ=45.63;MQ0=0;MQRankSum=-14.693;QD=10.41;ReadPosRankSum=5.293;SB=-7.701e+01 GT:AD:DP:GQ:PL 0/1:178,182:360:99:3748,0,3243 chrV 566839 . G T 1821.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.090;DP=290;Dels=0.00;FS=78.910;HaplotypeScore=14.2764;MLEAC=1;MLEAF=0.500;MQ=48.46;MQ0=5;MQRankSum=-14.098;QD=6.28;ReadPosRankSum=0.302;SB=-1.510e+02 GT:AD:DP:GQ:PL 0/1:164,125:290:99:1851,0,3167 chrV 566930 . T A 1664.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.932;DP=208;Dels=0.00;FS=144.468;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=48.32;MQ0=0;MQRankSum=-12.414;QD=8.00;ReadPosRankSum=-5.079;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:113,95:208:99:1694,0,2333 chrV 567774 . A G 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.94;MQ0=0;MQRankSum=-1.272;QD=14.63;ReadPosRankSum=1.162;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2345,267,0 chrV 567779 . G A 2233 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.40;MQ0=0;QD=14.50;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2266,246,0 chrV 567798 . C A 1985 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.78;MQ0=0;QD=13.50;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2018,219,0 chrV 567800 . C G 1839 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.05;MQ0=0;QD=12.43;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:1872,216,0 chrV 567815 . C T 37.08 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.311;DP=158;Dels=0.00;FS=2.613;HaplotypeScore=3.8660;MLEAC=1;MLEAF=0.500;MQ=34.18;MQ0=0;MQRankSum=0.007;QD=0.23;ReadPosRankSum=5.315;SB=-1.837e+03 GT:AD:DP:GQ:PL 0/1:11,147:158:15:67,0,15 chrV 567819 . G A 1850 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=36.69;MQ0=0;QD=11.78;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:1883,210,0 chrV 568383 . A G 7625.01 PASS AC=2;AF=1.00;AN=2;DP=348;Dels=0.00;FS=0.000;HaplotypeScore=25.0736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-3.711e+03 GT:AD:DP:GQ:PL 1/1:0,347:348:99:7625,861,0 chrV 568673 . C A 6190.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=13.4192;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.76;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:0,269:272:99:6190,681,0 chrV 568718 . C G 5301.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=14.0961;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.12;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,248:251:99:5301,609,0 chrV 569619 . C T 339.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.226;DP=373;Dels=0.00;FS=461.756;HaplotypeScore=71.4186;MLEAC=1;MLEAF=0.500;MQ=44.37;MQ0=0;MQRankSum=-16.307;QD=0.91;ReadPosRankSum=-1.803;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:202,170:372:99:369,0,3566 chrV 569627 . G A 579.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.640;DP=409;Dels=0.00;FS=480.695;HaplotypeScore=93.8980;MLEAC=1;MLEAF=0.500;MQ=42.71;MQ0=0;MQRankSum=-16.885;QD=1.42;ReadPosRankSum=-2.176;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:193,216:409:99:609,0,3525 chrV 569657 . A G 433.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;DP=510;Dels=0.00;FS=449.861;HaplotypeScore=99.5161;MLEAC=1;MLEAF=0.500;MQ=39.69;MQ0=0;MQRankSum=-15.620;QD=0.85;ReadPosRankSum=2.907;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:225,223:510:99:463,0,3594 chrV 569670 . T C 264.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.713;DP=567;Dels=0.00;FS=84.319;HaplotypeScore=72.9809;MLEAC=1;MLEAF=0.500;MQ=38.43;MQ0=0;MQRankSum=-2.907;QD=0.47;ReadPosRankSum=1.259;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:441,123:567:99:294,0,4765 chrV 569672 . G T 90.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.249;DP=572;Dels=0.00;FS=98.482;HaplotypeScore=326.0302;MLEAC=1;MLEAF=0.500;MQ=38.81;MQ0=0;MQRankSum=-0.220;QD=0.16;ReadPosRankSum=-0.534;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:479,90:572:99:120,0,4918 chrV 569681 . A G 1284.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.291;DP=616;Dels=0.00;FS=324.107;HaplotypeScore=218.5583;MLEAC=1;MLEAF=0.500;MQ=38.99;MQ0=0;MQRankSum=-16.238;QD=2.08;ReadPosRankSum=-0.518;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:324,288:616:99:1314,0,5061 chrV 569682 . C A 191.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.785;DP=618;Dels=0.00;FS=104.724;HaplotypeScore=216.5902;MLEAC=1;MLEAF=0.500;MQ=38.61;MQ0=0;MQRankSum=-0.699;QD=0.31;ReadPosRankSum=3.477;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:514,104:618:99:221,0,5870 chrV 569706 . A T 2936.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.553;DP=683;Dels=0.00;FS=677.119;HaplotypeScore=265.7586;MLEAC=1;MLEAF=0.500;MQ=39.61;MQ0=0;MQRankSum=-20.966;QD=4.30;ReadPosRankSum=0.512;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:218,465:683:99:2966,0,4346 chrV 569712 . G T 2913.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.057;DP=686;Dels=0.00;FS=662.609;HaplotypeScore=272.0504;MLEAC=1;MLEAF=0.500;MQ=39.89;MQ0=0;MQRankSum=-19.661;QD=4.25;ReadPosRankSum=2.017;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:237,449:686:99:2943,0,4358 chrV 569714 . T C 1593.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.235;DP=690;Dels=0.00;FS=407.779;HaplotypeScore=274.4164;MLEAC=1;MLEAF=0.500;MQ=39.69;MQ0=0;MQRankSum=-16.734;QD=2.31;ReadPosRankSum=1.911;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:367,321:690:99:1623,0,5931 chrV 569715 . G A 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.418;DP=695;Dels=0.00;FS=65.584;HaplotypeScore=394.4287;MLEAC=1;MLEAF=0.500;MQ=39.51;MQ0=0;MQRankSum=-1.256;QD=0.01;ReadPosRankSum=0.949;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:587,108:695:40:40,0,7222 chrV 569719 . A T 2934.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.066;DP=710;Dels=0.00;FS=644.088;HaplotypeScore=476.6779;MLEAC=1;MLEAF=0.500;MQ=39.01;MQ0=2;MQRankSum=-18.290;QD=4.13;ReadPosRankSum=-0.038;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:251,459:710:99:2964,0,4907 chrV 569725 . T A 1797.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.066;DP=693;Dels=0.00;FS=326.662;HaplotypeScore=366.2061;MLEAC=1;MLEAF=0.500;MQ=39.04;MQ0=6;MQRankSum=-15.157;QD=2.59;ReadPosRankSum=2.256;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:369,307:693:99:1827,0,6249 chrV 569806 . G A 1423.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.096;DP=1000;DS;Dels=0.00;FS=224.724;HaplotypeScore=170.3079;MLEAC=1;MLEAF=0.500;MQ=30.43;MQ0=36;MQRankSum=-5.412;QD=1.42;ReadPosRankSum=2.971;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:705,281:998:99:1453,0,7149 chrV 569818 . G T 743.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.331;DP=1000;DS;Dels=0.00;FS=98.011;HaplotypeScore=176.2374;MLEAC=1;MLEAF=0.500;MQ=30.60;MQ0=34;MQRankSum=-2.405;QD=0.74;ReadPosRankSum=5.990;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:876,122:1000:99:773,0,8983 chrV 569835 . A G 1731.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;DP=1000;DS;Dels=0.00;FS=30.460;HaplotypeScore=251.0939;MLEAC=1;MLEAF=0.500;MQ=31.18;MQ0=26;MQRankSum=-5.419;QD=1.73;ReadPosRankSum=2.217;SB=-3.280e+02 GT:AD:DP:GQ:PL 0/1:778,200:1000:99:1761,0,6596 chrV 569845 . G A 2199.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.525;DP=1000;DS;Dels=0.00;FS=1.791;HaplotypeScore=309.6307;MLEAC=1;MLEAF=0.500;MQ=30.21;MQ0=22;MQRankSum=-3.951;QD=2.20;ReadPosRankSum=-2.554;SB=-8.710e+02 GT:AD:DP:GQ:PL 0/1:705,253:997:99:2229,0,6457 chrV 569968 . C G 200.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.077;DP=1000;DS;Dels=0.00;FS=65.732;HaplotypeScore=504.9933;MLEAC=1;MLEAF=0.500;MQ=34.77;MQ0=14;MQRankSum=-1.827;QD=0.20;ReadPosRankSum=-2.079;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:857,125:1000:99:230,0,10152 chrV 569976 . A G 765.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.267;DP=1000;DS;Dels=0.00;FS=163.963;HaplotypeScore=453.3609;MLEAC=1;MLEAF=0.500;MQ=34.39;MQ0=15;MQRankSum=0.940;QD=0.77;ReadPosRankSum=-3.191;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:811,151:1000:99:795,0,9697 chrV 570002 . A G 1778.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;DP=1000;DS;Dels=0.00;FS=75.723;HaplotypeScore=270.7726;MLEAC=1;MLEAF=0.500;MQ=35.07;MQ0=10;MQRankSum=-6.441;QD=1.78;ReadPosRankSum=-3.987;SB=-1.446e+03 GT:AD:DP:GQ:PL 0/1:656,340:1000:99:1808,0,8087 chrV 570039 . C T 2079.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.486;DP=970;DS;Dels=0.00;FS=448.530;HaplotypeScore=692.7706;MLEAC=1;MLEAF=0.500;MQ=36.44;MQ0=22;MQRankSum=-16.361;QD=2.14;ReadPosRankSum=-1.686;SB=-1.601e+03 GT:AD:DP:GQ:PL 0/1:467,501:970:99:2109,0,7150 chrV 570041 . C T 6309.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.639;DP=988;DS;Dels=0.00;FS=14.943;HaplotypeScore=714.1036;MLEAC=1;MLEAF=0.500;MQ=37.06;MQ0=23;MQRankSum=-21.727;QD=6.39;ReadPosRankSum=2.915;SB=-4.446e+03 GT:AD:DP:GQ:PL 0/1:249,737:988:99:6309,0,3632 chrV 570042 . G A 5372.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.317;DP=1000;DS;Dels=0.00;FS=2.995;HaplotypeScore=720.7087;MLEAC=1;MLEAF=0.500;MQ=37.01;MQ0=22;MQRankSum=-19.505;QD=5.37;ReadPosRankSum=4.061;SB=-3.492e+03 GT:AD:DP:GQ:PL 0/1:356,637:1000:99:5372,0,4399 chrV 570044 . G A 793.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.434;DP=1000;DS;Dels=0.00;FS=137.596;HaplotypeScore=744.9595;MLEAC=1;MLEAF=0.500;MQ=36.69;MQ0=22;MQRankSum=-11.097;QD=0.79;ReadPosRankSum=5.376;SB=-9.600e+02 GT:AD:DP:GQ:PL 0/1:667,323:1000:99:823,0,8586 chrV 570100 . A G 482.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.128;DP=1000;DS;Dels=0.00;FS=45.941;HaplotypeScore=361.2290;MLEAC=1;MLEAF=0.500;MQ=37.28;MQ0=15;MQRankSum=-7.157;QD=0.48;ReadPosRankSum=4.545;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:844,153:1000:99:512,0,11965 chrV 570109 . G C 4551.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.232;DP=946;DS;Dels=0.00;FS=583.374;HaplotypeScore=366.3584;MLEAC=1;MLEAF=0.500;MQ=38.82;MQ0=9;MQRankSum=-13.159;QD=4.81;ReadPosRankSum=-0.099;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:506,437:946:99:4551,0,8465 chrV 570111 . C G 4633.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.160;DP=975;DS;Dels=0.00;FS=589.525;HaplotypeScore=250.4305;MLEAC=1;MLEAF=0.500;MQ=38.98;MQ0=9;MQRankSum=-13.464;QD=4.75;ReadPosRankSum=0.255;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:523,445:975:99:4633,0,8502 chrV 570116 . T G 3413.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.690;DP=986;DS;Dels=0.00;FS=546.197;HaplotypeScore=358.1904;MLEAC=1;MLEAF=0.500;MQ=38.46;MQ0=7;MQRankSum=-12.084;QD=3.46;ReadPosRankSum=1.788;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:597,388:986:99:3413,0,9535 chrV 570118 . G C 3188.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.308;DP=1000;DS;Dels=0.00;FS=525.278;HaplotypeScore=426.1456;MLEAC=1;MLEAF=0.500;MQ=38.37;MQ0=7;MQRankSum=-8.709;QD=3.19;ReadPosRankSum=2.551;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:609,386:1000:99:3218,0,9581 chrV 570134 . T C 5696.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;DP=1000;DS;Dels=0.00;FS=588.018;HaplotypeScore=533.4724;MLEAC=1;MLEAF=0.500;MQ=39.38;MQ0=11;MQRankSum=-12.876;QD=5.70;ReadPosRankSum=1.561;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:487,511:1000:99:5696,0,7270 chrV 570138 . G A 3334.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.434;DP=994;DS;Dels=0.00;FS=380.138;HaplotypeScore=719.0964;MLEAC=1;MLEAF=0.500;MQ=39.05;MQ0=17;MQRankSum=-8.827;QD=3.35;ReadPosRankSum=3.843;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:637,349:994:99:3334,0,10193 chrV 570147 . G A 1652.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.726;DP=977;DS;Dels=0.00;FS=6.355;HaplotypeScore=564.9143;MLEAC=1;MLEAF=0.500;MQ=38.15;MQ0=22;MQRankSum=-8.669;QD=1.69;ReadPosRankSum=-0.501;SB=-2.310e+02 GT:AD:DP:GQ:PL 0/1:718,253:975:99:1682,0,10529 chrV 570165 . T C 3200.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;DP=1000;DS;Dels=0.00;FS=196.751;HaplotypeScore=74.6751;MLEAC=1;MLEAF=0.500;MQ=36.61;MQ0=42;MQRankSum=-6.744;QD=3.20;ReadPosRankSum=2.585;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:653,341:1000:99:3230,0,8342 chrV 570180 . G T 3908.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.849;DP=1000;DS;Dels=0.00;FS=249.049;HaplotypeScore=46.4864;MLEAC=1;MLEAF=0.500;MQ=35.97;MQ0=42;MQRankSum=-6.584;QD=3.91;ReadPosRankSum=0.895;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:652,347:1000:99:3908,0,8424 chrV 570186 . G C 3091.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-17.004;DP=1000;DS;Dels=0.00;FS=243.084;HaplotypeScore=291.9391;MLEAC=1;MLEAF=0.500;MQ=36.10;MQ0=42;MQRankSum=-6.415;QD=3.09;ReadPosRankSum=3.337;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:672,321:1000:99:3121,0,9326 chrV 570194 . G A 2979.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.776;DP=997;DS;Dels=0.00;FS=126.776;HaplotypeScore=332.2548;MLEAC=1;MLEAF=0.500;MQ=35.99;MQ0=42;MQRankSum=-7.007;QD=2.99;ReadPosRankSum=-0.346;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:718,276:997:99:3009,0,9611 chrV 570209 . G A 3015.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.503;DP=999;DS;Dels=0.00;FS=99.370;HaplotypeScore=468.4958;MLEAC=1;MLEAF=0.500;MQ=36.80;MQ0=42;MQRankSum=-7.933;QD=3.02;ReadPosRankSum=7.223;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:626,260:997:99:3045,0,8955 chrV 570218 . G A 3092.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.007;DP=997;DS;Dels=0.04;FS=40.902;HaplotypeScore=438.9819;MLEAC=1;MLEAF=0.500;MQ=37.45;MQ0=39;MQRankSum=-12.104;QD=3.10;ReadPosRankSum=0.465;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:584,377:962:99:3122,0,9176 chrV 570229 . G A 2950.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.193;DP=981;DS;Dels=0.00;FS=18.892;HaplotypeScore=365.7252;MLEAC=1;MLEAF=0.500;MQ=38.05;MQ0=33;MQRankSum=-11.739;QD=3.01;ReadPosRankSum=5.255;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:638,339:981:99:2980,0,8942 chrV 570235 . G A 3101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;DP=948;DS;Dels=0.00;FS=203.665;HaplotypeScore=372.1130;MLEAC=1;MLEAF=0.500;MQ=38.72;MQ0=28;MQRankSum=-10.750;QD=3.27;ReadPosRankSum=3.831;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:624,319:948:99:3131,0,8440 chrV 570498 . C T 1766.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.576;DP=468;Dels=0.00;FS=309.608;HaplotypeScore=28.1775;MLEAC=1;MLEAF=0.500;MQ=20.34;MQ0=52;MQRankSum=11.960;QD=3.77;ReadPosRankSum=0.913;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:306,161:468:99:1796,0,2930 chrVI 918 . T C 655.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.843;DP=789;Dels=0.00;FS=53.258;HaplotypeScore=187.3663;MLEAC=1;MLEAF=0.500;MQ=19.84;MQ0=156;MQRankSum=-12.843;QD=0.83;ReadPosRankSum=-6.752;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:317,472:789:99:685,0,2882 chrVI 986 . C T 6284.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.566;DP=971;DS;Dels=0.00;FS=301.246;HaplotypeScore=16.3293;MLEAC=1;MLEAF=0.500;MQ=28.21;MQ0=129;MQRankSum=7.281;QD=6.47;ReadPosRankSum=4.418;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:461,505:971:99:6284,0,4164 chrVI 990 . T C 6037.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-14.972;DP=966;DS;Dels=0.00;FS=324.387;HaplotypeScore=37.0362;MLEAC=1;MLEAF=0.500;MQ=28.09;MQ0=136;MQRankSum=7.160;QD=6.25;ReadPosRankSum=3.077;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:465,497:966:99:6037,0,4682 chrVI 1107 . G A 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.780;DP=418;Dels=0.00;FS=0.000;HaplotypeScore=62.6640;MLEAC=1;MLEAF=0.500;MQ=19.53;MQ0=109;MQRankSum=3.046;QD=0.05;ReadPosRankSum=-7.071;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:367,51:418:51:51,0,1733 chrVI 1148 . G A 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.327;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=1;MLEAF=0.500;MQ=14.70;MQ0=26;MQRankSum=0.209;QD=0.09;ReadPosRankSum=10.445;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,93:226:50:50,0,255 chrVI 1152 . C G 564 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.792;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=14.73;MQ0=27;MQRankSum=2.491;QD=2.43;ReadPosRankSum=-8.260;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:81,150:232:69:597,69,0 chrVI 1154 . G C 777 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.99;MQ0=29;QD=3.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,162:236:93:810,93,0 chrVI 1236 . A G 5648.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.936;DP=728;Dels=0.00;FS=0.000;HaplotypeScore=4.4982;MLEAC=1;MLEAF=0.500;MQ=23.51;MQ0=127;MQRankSum=2.374;QD=7.76;ReadPosRankSum=1.575;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:153,575:728:99:5648,0,539 chrVI 1238 . C A 5714.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.510;DP=714;Dels=0.00;FS=0.000;HaplotypeScore=12.9483;MLEAC=1;MLEAF=0.500;MQ=23.71;MQ0=123;MQRankSum=1.578;QD=8.00;ReadPosRankSum=0.454;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:140,574:714:99:5714,0,453 chrVI 1247 . A C 4719.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;DP=618;Dels=0.00;FS=0.000;HaplotypeScore=23.6837;MLEAC=1;MLEAF=0.500;MQ=23.75;MQ0=115;MQRankSum=1.383;QD=7.64;ReadPosRankSum=4.012;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,479:618:99:4719,0,471 chrVI 1251 . G A 4540.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.426;DP=530;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=1;MLEAF=0.500;MQ=23.66;MQ0=98;MQRankSum=0.399;QD=8.57;ReadPosRankSum=2.284;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,418:530:99:4540,0,350 chrVI 1291 . C T 605 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=26.24;MQ0=3;QD=11.20;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,46:54:72:638,72,0 chrVI 4838 . C A 77.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.641;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=20.0765;MLEAC=2;MLEAF=1.00;MQ=26.15;MQ0=0;MQRankSum=0.264;QD=2.21;ReadPosRankSum=2.301;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:3,31:34:12:110,12,0 chrVI 4847 . A T 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=43.4059;MLEAC=1;MLEAF=0.500;MQ=26.44;MQ0=0;MQRankSum=-0.117;QD=0.77;ReadPosRankSum=0.587;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,21:43:63:63,0,71 chrVI 4850 . C T 117.13 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=73.2700;MLEAC=2;MLEAF=1.00;MQ=26.44;MQ0=0;QD=2.72;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,43:43:18:150,18,0 chrVI 4861 . T A 43.97 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=93.7899;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=0;QD=0.98;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,45:45:9:76,9,0 chrVI 4892 . G A 120.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.279;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=66.0317;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=0;MQRankSum=1.409;QD=2.00;ReadPosRankSum=0.369;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:2,55:60:18:153,18,0 chrVI 5135 . A C 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=1;MLEAF=0.500;MQ=26.32;MQ0=0;MQRankSum=0.358;QD=2.08;ReadPosRankSum=0.358;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:3,2:5:40:40,0,42 chrVI 5188 . T C 76.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:109,12,0 chrVI 5207 . T C 74.51 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.33;MQ0=5;QD=8.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:12:107,12,0 chrVI 5344 . T C 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.26;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:56,6,0 chrVI 5352 . T C 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.49;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:82,9,0 chrVI 5357 . C A 31.12 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;QD=7.78;SB=17.64 GT:AD:DP:GQ:PL 1/1:0,2:4:6:62,6,0 chrVI 5362 . C T 18.10 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.68;MQ0=2;MQRankSum=0.000;QD=3.02;ReadPosRankSum=-1.026;SB=-3.363e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:19:48,0,19 chrVI 5379 . A C 51.97 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=3.4712;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=6;QD=4.33;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,10:12:9:84,9,0 chrVI 5383 . C T 50.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=19;Dels=0.00;FS=11.553;HaplotypeScore=11.6572;MLEAC=2;MLEAF=1.00;MQ=21.67;MQ0=6;MQRankSum=-0.231;QD=2.68;ReadPosRankSum=2.700;SB=2.44 GT:AD:DP:GQ:PL 1/1:15,4:19:9:83,9,0 chrVI 5404 . T A 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;DP=32;Dels=0.00;FS=7.404;HaplotypeScore=3.8924;MLEAC=1;MLEAF=0.500;MQ=15.89;MQ0=20;MQRankSum=0.740;QD=0.81;ReadPosRankSum=-0.925;SB=0.205 GT:AD:DP:GQ:PL 0/1:29,3:32:56:56,0,135 chrVI 5410 . T A 216.01 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.9715;MLEAC=2;MLEAF=1.00;MQ=15.65;MQ0=21;QD=6.55;SB=-1.059e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:27:249,27,0 chrVI 5472 . T C 125.13 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.78;MQ0=19;QD=4.47;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:3,24:28:18:158,18,0 chrVI 5517 . C G 38.97 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.06;MQ0=0;QD=2.29;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:71,9,0 chrVI 5527 . C T 79.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;QD=4.97;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:112,12,0 chrVI 5529 . C G 78.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;QD=4.91;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:111,12,0 chrVI 5530 . A G 76.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;QD=4.78;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:109,12,0 chrVI 5531 . A C 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;QD=4.66;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:107,12,0 chrVI 5540 . C G 70.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;QD=4.41;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:103,12,0 chrVI 5542 . A G 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;QD=4.28;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:101,12,0 chrVI 5543 . T C 70.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;QD=4.41;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:103,12,0 chrVI 5546 . C T 76.51 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=4.25;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:12:109,12,0 chrVI 5553 . A G 75.51 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=4.20;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:12:108,12,0 chrVI 5554 . G C 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=4.08;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:12:106,12,0 chrVI 5569 . T A 189.03 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.65;MQ0=2;QD=7.00;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:2,25:27:24:222,24,0 chrVI 5581 . C T 219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.7819;MLEAC=2;MLEAF=1.00;MQ=26.54;MQ0=3;MQRankSum=0.456;QD=9.52;ReadPosRankSum=1.552;SB=-1.179e+02 GT:AD:DP:GQ:PL 1/1:1,22:23:27:252,27,0 chrVI 5591 . A T 158.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.541;DP=39;Dels=0.00;FS=2.476;HaplotypeScore=1.9497;MLEAC=1;MLEAF=0.500;MQ=26.92;MQ0=3;MQRankSum=0.209;QD=4.05;ReadPosRankSum=0.057;SB=-1.430e+02 GT:AD:DP:GQ:PL 0/1:11,28:39:24:188,0,24 chrVI 5596 . G A 133.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=27.62;MQ0=3;MQRankSum=1.436;QD=1.75;ReadPosRankSum=-2.078;SB=-1.360e+02 GT:AD:DP:GQ:PL 0/1:13,63:76:23:163,0,23 chrVI 5605 . C A 415 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=4;QD=3.46;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:51:448,51,0 chrVI 5622 . C A 261.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.523;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.14;MQ0=4;MQRankSum=2.464;QD=1.61;ReadPosRankSum=-0.789;SB=-1.417e+02 GT:AD:DP:GQ:PL 0/1:25,137:162:99:291,0,138 chrVI 5625 . T C 506 filter AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=4;QD=2.72;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:2,184:186:63:539,63,0 chrVI 5635 . T C 110.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.177;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.19;MQ0=4;MQRankSum=-1.714;QD=0.59;ReadPosRankSum=0.500;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:164,23:187:99:140,0,295 chrVI 5644 . C T 229.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.144;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=28.12;MQ0=5;MQRankSum=1.356;QD=1.21;ReadPosRankSum=0.423;SB=-1.010e+02 GT:AD:DP:GQ:PL 0/1:27,163:190:99:259,0,144 chrVI 5645 . G A 252.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.189;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=28.12;MQ0=5;MQRankSum=1.745;QD=1.33;ReadPosRankSum=0.080;SB=-1.410e+02 GT:AD:DP:GQ:PL 0/1:27,162:190:99:282,0,137 chrVI 5650 . T C 205.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.734;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=28.12;MQ0=5;MQRankSum=2.268;QD=1.08;ReadPosRankSum=-0.243;SB=-1.010e+02 GT:AD:DP:GQ:PL 0/1:26,164:190:99:235,0,156 chrVI 5656 . A G 197.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.684;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=28.26;MQ0=3;MQRankSum=1.529;QD=1.06;ReadPosRankSum=0.487;SB=-5.102e+01 GT:AD:DP:GQ:PL 0/1:26,160:186:99:227,0,100 chrVI 5667 . T C 376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.6406;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=3;MQRankSum=1.597;QD=2.04;ReadPosRankSum=1.713;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:2,182:184:48:409,48,0 chrVI 5670 . T C 96.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.447;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.5984;MLEAC=1;MLEAF=0.500;MQ=28.14;MQ0=3;MQRankSum=-1.906;QD=0.52;ReadPosRankSum=-1.190;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:161,24:185:99:126,0,200 chrVI 5682 . A G 120.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;DP=162;Dels=0.00;FS=71.267;HaplotypeScore=34.7915;MLEAC=1;MLEAF=0.500;MQ=28.10;MQ0=3;MQRankSum=1.109;QD=0.74;ReadPosRankSum=1.509;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:32,129:162:99:150,0,281 chrVI 5688 . G T 386 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=25.0696;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=3;QD=2.99;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,107:129:45:419,45,0 chrVI 5731 . C T 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.456;DP=67;Dels=0.00;FS=35.966;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.20;MQ0=2;MQRankSum=2.054;QD=0.20;ReadPosRankSum=-4.499;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,20:67:43:43,0,617 chrVI 5734 . C G 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;DP=68;Dels=0.00;FS=32.189;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=26.80;MQ0=2;MQRankSum=1.175;QD=0.19;ReadPosRankSum=-3.880;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,19:68:43:43,0,619 chrVI 5735 . C T 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.419;DP=68;Dels=0.00;FS=32.189;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=26.80;MQ0=2;MQRankSum=1.827;QD=0.21;ReadPosRankSum=-3.781;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,19:68:44:44,0,639 chrVI 5739 . C T 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.058;DP=72;Dels=0.00;FS=27.901;HaplotypeScore=6.8567;MLEAC=1;MLEAF=0.500;MQ=26.19;MQ0=2;MQRankSum=2.206;QD=0.24;ReadPosRankSum=-2.509;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,19:72:47:47,0,631 chrVI 5740 . C T 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.055;DP=72;Dels=0.00;FS=27.901;HaplotypeScore=6.8567;MLEAC=1;MLEAF=0.500;MQ=26.19;MQ0=2;MQRankSum=1.479;QD=0.20;ReadPosRankSum=-2.483;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,19:72:44:44,0,628 chrVI 5761 . A C 783.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.558;DP=209;Dels=0.00;FS=102.673;HaplotypeScore=43.4449;MLEAC=1;MLEAF=0.500;MQ=24.95;MQ0=9;MQRankSum=-0.623;QD=3.75;ReadPosRankSum=-2.739;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,143:209:99:813,0,706 chrVI 5764 . C T 2038 filter AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=49.6616;MLEAC=2;MLEAF=1.00;MQ=24.74;MQ0=13;QD=8.67;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,233:235:99:2071,231,0 chrVI 5786 . G A 4949.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.259;DP=423;Dels=0.00;FS=12.351;HaplotypeScore=47.5762;MLEAC=2;MLEAF=1.00;MQ=37.87;MQ0=18;MQRankSum=4.048;QD=11.70;ReadPosRankSum=0.229;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:32,384:423:99:4949,367,0 chrVI 5879 . T C 273.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.705;DP=577;Dels=0.00;FS=11.581;HaplotypeScore=39.0521;MLEAC=1;MLEAF=0.500;MQ=51.08;MQ0=2;MQRankSum=-5.232;QD=0.47;ReadPosRankSum=-2.931;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:466,107:577:99:303,0,9818 chrVI 6102 . G A 4675.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.915;DP=1000;DS;Dels=0.00;FS=1.586;HaplotypeScore=230.3998;MLEAC=1;MLEAF=0.500;MQ=40.56;MQ0=0;MQRankSum=0.711;QD=4.68;ReadPosRankSum=0.696;SB=-1.850e+03 GT:AD:DP:GQ:PL 0/1:598,398:1000:99:4675,0,8041 chrVI 6136 . G A 4750.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.942;DP=972;DS;Dels=0.00;FS=4.948;HaplotypeScore=171.4035;MLEAC=1;MLEAF=0.500;MQ=42.74;MQ0=0;MQRankSum=4.363;QD=4.89;ReadPosRankSum=-0.780;SB=-1.402e+03 GT:AD:DP:GQ:PL 0/1:593,376:972:99:4750,0,7643 chrVI 6181 . T C 10772.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;DP=912;DS;Dels=0.00;FS=53.716;HaplotypeScore=139.1462;MLEAC=1;MLEAF=0.500;MQ=39.97;MQ0=2;MQRankSum=7.513;QD=11.81;ReadPosRankSum=2.212;SB=-2.350e+03 GT:AD:DP:GQ:PL 0/1:213,693:912:99:10772,0,1601 chrVI 6189 . C T 437.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.032;DP=894;DS;Dels=0.00;FS=2.886;HaplotypeScore=115.6762;MLEAC=1;MLEAF=0.500;MQ=38.37;MQ0=2;MQRankSum=-3.387;QD=0.49;ReadPosRankSum=0.258;SB=-3.290e+02 GT:AD:DP:GQ:PL 0/1:752,132:894:99:467,0,10326 chrVI 6201 . A G 1138.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;DP=839;DS;Dels=0.00;FS=15.275;HaplotypeScore=37.7305;MLEAC=1;MLEAF=0.500;MQ=35.93;MQ0=2;MQRankSum=-1.665;QD=1.36;ReadPosRankSum=3.574;SB=-2.530e+02 GT:AD:DP:GQ:PL 0/1:672,167:839:99:1168,0,8251 chrVI 6203 . C G 1079.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.243;DP=817;DS;Dels=0.00;FS=17.259;HaplotypeScore=36.8365;MLEAC=1;MLEAF=0.500;MQ=35.29;MQ0=2;MQRankSum=-0.212;QD=1.32;ReadPosRankSum=3.588;SB=-2.150e+02 GT:AD:DP:GQ:PL 0/1:648,162:817:99:1109,0,8011 chrVI 6204 . T C 979.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.236;DP=812;DS;Dels=0.00;FS=13.267;HaplotypeScore=31.3704;MLEAC=1;MLEAF=0.500;MQ=34.97;MQ0=2;MQRankSum=-0.389;QD=1.21;ReadPosRankSum=4.113;SB=-2.090e+02 GT:AD:DP:GQ:PL 0/1:661,150:812:99:1009,0,8175 chrVI 6216 . C T 1348.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.383;DP=780;Dels=0.00;FS=14.050;HaplotypeScore=86.8163;MLEAC=1;MLEAF=0.500;MQ=31.56;MQ0=3;MQRankSum=1.598;QD=1.73;ReadPosRankSum=0.803;SB=-1.380e+02 GT:AD:DP:GQ:PL 0/1:613,161:780:99:1378,0,6790 chrVI 6232 . C T 8394.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.721;DP=649;Dels=0.00;FS=0.000;HaplotypeScore=25.1952;MLEAC=2;MLEAF=1.00;MQ=25.31;MQ0=3;MQRankSum=-0.189;QD=12.93;ReadPosRankSum=0.887;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,645:648:99:8394,965,0 chrVI 6233 . T G 8103.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.393;DP=648;Dels=0.00;FS=7.164;HaplotypeScore=23.6179;MLEAC=2;MLEAF=1.00;MQ=25.20;MQ0=3;MQRankSum=-0.428;QD=12.50;ReadPosRankSum=1.295;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:2,634:648:99:8103,956,0 chrVI 6248 . T C 4148.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.284;DP=591;Dels=0.00;FS=3.039;HaplotypeScore=27.6582;MLEAC=1;MLEAF=0.500;MQ=22.65;MQ0=5;MQRankSum=-9.433;QD=7.02;ReadPosRankSum=3.790;SB=-3.000e+02 GT:AD:DP:GQ:PL 0/1:92,499:591:99:4148,0,516 chrVI 6249 . A T 4079.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;DP=590;Dels=0.00;FS=3.116;HaplotypeScore=27.6582;MLEAC=1;MLEAF=0.500;MQ=22.69;MQ0=5;MQRankSum=-9.351;QD=6.91;ReadPosRankSum=3.822;SB=-3.000e+02 GT:AD:DP:GQ:PL 0/1:96,494:590:99:4079,0,684 chrVI 6258 . G T 6325.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.025;DP=657;Dels=0.00;FS=0.000;HaplotypeScore=19.9244;MLEAC=2;MLEAF=1.00;MQ=23.86;MQ0=6;MQRankSum=0.548;QD=9.63;ReadPosRankSum=1.820;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:4,650:657:99:6325,707,0 chrVI 6294 . A G 6497.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.900;DP=712;Dels=0.00;FS=0.000;HaplotypeScore=24.6210;MLEAC=2;MLEAF=1.00;MQ=23.02;MQ0=12;MQRankSum=1.963;QD=9.13;ReadPosRankSum=4.380;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:12,700:712:99:6497,696,0 chrVI 6336 . G A 2425.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.499;DP=615;Dels=0.00;FS=354.799;HaplotypeScore=45.3202;MLEAC=1;MLEAF=0.500;MQ=21.44;MQ0=10;MQRankSum=-7.447;QD=3.94;ReadPosRankSum=-1.230;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,516:615:99:2455,0,1265 chrVI 6351 . A G 3431.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.578;DP=504;Dels=0.00;FS=2.118;HaplotypeScore=6.1832;MLEAC=2;MLEAF=1.00;MQ=20.11;MQ0=8;MQRankSum=-4.453;QD=6.81;ReadPosRankSum=5.674;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:11,493:504:99:3431,399,0 chrVI 6354 . C A 3506.01 filter AC=2;AF=1.00;AN=2;DP=482;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=19.09;MQ0=7;QD=7.27;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,482:482:99:3506,402,0 chrVI 6372 . A G 879.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.569;DP=384;Dels=0.00;FS=210.412;HaplotypeScore=2.6711;MLEAC=1;MLEAF=0.500;MQ=21.31;MQ0=2;MQRankSum=8.646;QD=2.29;ReadPosRankSum=5.050;SB=-5.030e+02 GT:AD:DP:GQ:PL 0/1:314,70:384:99:909,0,1965 chrVI 6384 . C T 1953.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.553;DP=261;Dels=0.00;FS=165.306;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=24.88;MQ0=0;MQRankSum=-4.049;QD=7.48;ReadPosRankSum=0.176;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,197:261:99:1983,0,859 chrVI 6386 . C T 1966.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.424;DP=259;Dels=0.00;FS=168.932;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=24.89;MQ0=0;MQRankSum=-4.567;QD=7.59;ReadPosRankSum=0.275;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,197:259:99:1996,0,826 chrVI 6402 . C T 1740.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.398;DP=157;Dels=0.00;FS=68.384;HaplotypeScore=4.1212;MLEAC=1;MLEAF=0.500;MQ=28.00;MQ0=0;MQRankSum=0.599;QD=11.08;ReadPosRankSum=0.742;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,120:157:99:1770,0,317 chrVI 6417 . T C 215.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;DP=77;Dels=0.00;FS=5.528;HaplotypeScore=122.0508;MLEAC=1;MLEAF=0.500;MQ=29.26;MQ0=0;MQRankSum=1.316;QD=2.79;ReadPosRankSum=-3.003;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:54,21:77:29:245,0,29 chrVI 6434 . A C 130.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.083;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;MQRankSum=-2.237;QD=2.24;ReadPosRankSum=2.546;SB=-2.207e+01 GT:AD:DP:GQ:PL 1/1:4,9:58:18:163,18,0 chrVI 6441 . C A 81.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.670;DP=41;Dels=0.00;FS=8.239;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=25.61;MQ0=1;MQRankSum=2.178;QD=1.99;ReadPosRankSum=-0.663;SB=-1.951e+01 GT:AD:DP:GQ:PL 1/1:35,6:41:12:114,12,0 chrVI 6444 . A G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.167;DP=34;Dels=0.00;FS=10.142;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=24.51;MQ0=3;MQRankSum=0.702;QD=0.64;ReadPosRankSum=1.370;SB=1.24 GT:AD:DP:GQ:PL 1/1:31,3:34:6:53,6,0 chrVI 6445 . A G 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.446;DP=32;Dels=0.00;FS=9.700;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=24.37;MQ0=4;MQRankSum=0.223;QD=0.65;ReadPosRankSum=1.263;SB=1.24 GT:AD:DP:GQ:PL 1/1:29,3:32:6:52,6,0 chrVI 6446 . A G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.371;DP=32;Dels=0.00;FS=9.700;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=24.37;MQ0=4;MQRankSum=0.446;QD=0.68;ReadPosRankSum=1.188;SB=-6.759e+00 GT:AD:DP:GQ:PL 1/1:29,3:32:6:53,6,0 chrVI 6447 . A G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.193;DP=31;Dels=0.00;FS=9.542;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=4;MQRankSum=0.810;QD=0.64;ReadPosRankSum=1.119;SB=-1.759e+00 GT:AD:DP:GQ:PL 1/1:28,3:31:6:51,6,0 chrVI 6448 . A T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.818;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=23.65;MQ0=4;MQRankSum=0.818;QD=0.73;ReadPosRankSum=1.203;SB=1.24 GT:AD:DP:GQ:PL 1/1:28,2:30:6:53,6,0 chrVI 6455 . A G 93.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=3.9092;MLEAC=2;MLEAF=1.00;MQ=23.07;MQ0=4;QD=4.24;SB=-2.227e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:15:126,15,0 chrVI 6467 . A G 85.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.202;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=19.65;MQ0=6;MQRankSum=0.495;QD=4.26;ReadPosRankSum=0.071;SB=2.74 GT:AD:DP:GQ:PL 1/1:10,10:20:15:118,15,0 chrVI 6474 . T G 82.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=5.7853;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=7;QD=3.74;SB=-2.707e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:15:115,15,0 chrVI 6481 . A G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.197;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=7.7263;MLEAC=2;MLEAF=1.00;MQ=19.62;MQ0=7;MQRankSum=3.014;QD=0.84;ReadPosRankSum=1.362;SB=1.24 GT:AD:DP:GQ:PL 1/1:15,11:26:6:53,6,0 chrVI 6482 . G T 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=7.7263;MLEAC=2;MLEAF=1.00;MQ=19.62;MQ0=7;MQRankSum=2.931;QD=0.65;ReadPosRankSum=1.115;SB=1.24 GT:AD:DP:GQ:PL 1/1:15,11:26:6:48,6,0 chrVI 6491 . T C 158.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=20.77;MQ0=7;QD=5.27;SB=-4.095e-02 GT:AD:DP:GQ:PL 1/1:0,30:30:24:191,24,0 chrVI 6499 . T C 185.01 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.94;MQ0=8;QD=5.44;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,34:34:27:218,27,0 chrVI 6516 . C G 307 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.374;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.71;MQ0=8;MQRankSum=1.685;QD=7.14;ReadPosRankSum=-1.167;SB=-6.632e-03 GT:AD:DP:GQ:PL 1/1:12,31:43:42:340,42,0 chrVI 6522 . A C 306 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.229;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=21.79;MQ0=8;MQRankSum=0.961;QD=6.95;ReadPosRankSum=-0.778;SB=-6.377e-03 GT:AD:DP:GQ:PL 1/1:13,31:44:42:339,42,0 chrVI 6526 . G A 311 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.151;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=21.26;MQ0=8;MQRankSum=1.208;QD=7.77;ReadPosRankSum=-0.854;SB=6.677e-03 GT:AD:DP:GQ:PL 1/1:12,27:40:42:344,42,0 chrVI 6528 . A G 299 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.623;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=21.26;MQ0=8;MQRankSum=1.453;QD=7.47;ReadPosRankSum=0.415;SB=0.010 GT:AD:DP:GQ:PL 1/1:13,27:40:42:332,42,0 chrVI 6529 . G A 303 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.076;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=21.26;MQ0=8;MQRankSum=1.142;QD=7.57;ReadPosRankSum=0.467;SB=1.19 GT:AD:DP:GQ:PL 1/1:13,27:40:42:336,42,0 chrVI 6530 . C A 306 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.038;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=21.26;MQ0=8;MQRankSum=1.557;QD=7.65;ReadPosRankSum=0.519;SB=1.45 GT:AD:DP:GQ:PL 1/1:13,27:40:42:339,42,0 chrVI 6533 . T G 298 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.022;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=22.70;MQ0=6;MQRankSum=1.840;QD=6.48;ReadPosRankSum=-0.286;SB=1.610e-03 GT:AD:DP:GQ:PL 1/1:11,35:46:42:331,42,0 chrVI 6540 . T G 262 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.864;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=23.19;MQ0=4;MQRankSum=1.727;QD=6.24;ReadPosRankSum=0.302;SB=2.221e-03 GT:AD:DP:GQ:PL 1/1:9,33:42:36:295,36,0 chrVI 6541 . T A 263 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.734;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=23.19;MQ0=4;MQRankSum=1.166;QD=6.26;ReadPosRankSum=0.432;SB=2.221e-03 GT:AD:DP:GQ:PL 1/1:9,33:42:36:296,36,0 chrVI 6542 . T G 256 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.814;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=23.19;MQ0=4;MQRankSum=1.641;QD=6.10;ReadPosRankSum=0.216;SB=0.019 GT:AD:DP:GQ:PL 1/1:9,33:42:36:289,36,0 chrVI 6547 . A C 180.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=1;MLEAF=0.500;MQ=23.50;MQ0=4;MQRankSum=2.546;QD=3.91;ReadPosRankSum=1.073;SB=0.626 GT:AD:DP:GQ:PL 0/1:12,34:46:26:210,0,26 chrVI 6554 . T G 260 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.350;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.8135;MLEAC=2;MLEAF=1.00;MQ=24.32;MQ0=3;MQRankSum=1.309;QD=6.05;ReadPosRankSum=1.227;SB=-5.955e-03 GT:AD:DP:GQ:PL 1/1:8,35:43:36:293,36,0 chrVI 6556 . A C 263 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.818;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.8135;MLEAC=2;MLEAF=1.00;MQ=24.32;MQ0=3;MQRankSum=2.208;QD=6.12;ReadPosRankSum=1.595;SB=-3.224e-03 GT:AD:DP:GQ:PL 1/1:8,35:43:36:296,36,0 chrVI 6563 . C T 271 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.83;MQ0=1;QD=6.77;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:36:304,36,0 chrVI 6587 . A G 156.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=25.02;MQ0=1;MQRankSum=0.133;QD=5.78;ReadPosRankSum=0.667;SB=-2.204e+01 GT:AD:DP:GQ:PL 1/1:1,26:27:24:189,24,0 chrVI 6594 . C G 70.79 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.341;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=1;MLEAF=0.500;MQ=24.75;MQ0=1;MQRankSum=-0.628;QD=3.08;ReadPosRankSum=-0.286;SB=-2.516e+01 GT:AD:DP:GQ:PL 0/1:3,20:23:4:100,0,4 chrVI 7466 . A C 407 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.97;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:48:440,48,0 chrVI 7472 . G A 456 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=4;QD=11.12;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,37:41:54:489,54,0 chrVI 7488 . G A 460.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.153;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=1;MLEAF=0.500;MQ=23.95;MQ0=6;MQRankSum=0.336;QD=6.57;ReadPosRankSum=-1.517;SB=-7.206e-03 GT:AD:DP:GQ:PL 0/1:20,44:70:35:490,0,35 chrVI 7520 . T C 818.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=1;MLEAF=0.500;MQ=19.54;MQ0=21;MQRankSum=-0.551;QD=4.96;ReadPosRankSum=2.382;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,113:165:99:848,0,128 chrVI 7575 . C G 1117.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=19.7170;MLEAC=1;MLEAF=0.500;MQ=16.01;MQ0=59;MQRankSum=-4.004;QD=4.12;ReadPosRankSum=-3.944;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,214:271:99:1147,0,241 chrVI 7619 . A T 652.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.185;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=13.64;MQ0=77;MQRankSum=-5.405;QD=2.41;ReadPosRankSum=2.763;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:39,232:271:99:682,0,174 chrVI 7643 . G C 876 filter AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=14.98;MQ0=62;QD=3.60;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,240:243:99:909,108,0 chrVI 7717 . G A 628.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.167;DP=294;Dels=0.00;FS=7.605;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=22.13;MQ0=32;MQRankSum=1.751;QD=2.14;ReadPosRankSum=-0.957;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:228,64:294:99:658,0,2591 chrVI 7834 . A G 4419.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-14.770;DP=555;Dels=0.00;FS=997.977;HaplotypeScore=34.2223;MLEAC=1;MLEAF=0.500;MQ=23.39;MQ0=58;MQRankSum=4.764;QD=7.96;ReadPosRankSum=-0.931;SB=-4.802e+01 GT:AD:DP:GQ:PL 0/1:281,273:554:99:4419,0,3293 chrVI 7887 . T G 400.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.984;DP=291;Dels=0.00;FS=513.346;HaplotypeScore=7.8165;MLEAC=1;MLEAF=0.500;MQ=18.86;MQ0=103;MQRankSum=-7.516;QD=1.37;ReadPosRankSum=6.967;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:150,141:291:99:430,0,1823 chrVI 7892 . A G 365.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.916;DP=269;Dels=0.00;FS=418.787;HaplotypeScore=4.2919;MLEAC=1;MLEAF=0.500;MQ=18.92;MQ0=100;MQRankSum=-8.284;QD=1.36;ReadPosRankSum=6.634;SB=-3.006e+00 GT:AD:DP:GQ:PL 0/1:142,126:269:99:395,0,1433 chrVI 8038 . C T 1929 filter AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=19.0314;MLEAC=2;MLEAF=1.00;MQ=18.71;MQ0=67;QD=7.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,244:248:99:1962,228,0 chrVI 8186 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.11;MQ0=8;QD=1.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:10:6:51,6,0 chrVI 8262 . G A 1008 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.53;MQ0=57;QD=10.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1041,114,0 chrVI 8323 . C T 1954 filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=26.8038;MLEAC=2;MLEAF=1.00;MQ=25.23;MQ0=16;QD=14.26;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1987,225,0 chrVI 8530 . G A 1720 filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=20.90;MQ0=22;QD=13.23;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1753,195,0 chrVI 8532 . A G 1625 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.76;MQ0=23;MQRankSum=-2.073;QD=12.13;ReadPosRankSum=2.317;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:3,131:134:99:1658,189,0 chrVI 8569 . A C 1998 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.2209;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=25;MQRankSum=0.569;QD=11.68;ReadPosRankSum=1.708;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:1,170:171:99:2031,228,0 chrVI 8661 . A G 319 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.88;MQ0=27;QD=4.09;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,77:78:39:352,39,0 chrVI 8668 . A C 300 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=22.40;MQ0=29;QD=3.95;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:39:333,39,0 chrVI 8753 . T C 2168 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=10;MQRankSum=1.291;QD=11.66;ReadPosRankSum=2.422;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:2,184:186:99:2201,246,0 chrVI 8759 . T G 2284 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=9;MQRankSum=-0.009;QD=11.65;ReadPosRankSum=1.714;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:1,195:196:99:2317,258,0 chrVI 8776 . T C 2314 filter AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=6;QD=11.18;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,207:207:99:2347,267,0 chrVI 8787 . T C 2149 filter AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=6;QD=10.48;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:1,204:205:99:2182,240,0 chrVI 8801 . A G 1597 filter AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=5;QD=8.97;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:1,177:178:99:1630,186,0 chrVI 8837 . G C 205.01 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.36;MQ0=2;QD=3.66;SB=-5.302e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:27:238,27,0 chrVI 8849 . G C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.82;MQ0=2;QD=0.88;SB=-2.776e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:6:55,6,0 chrVI 8869 . T C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.87;MQ0=3;QD=1.98;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:6:55,6,0 chrVI 8893 . A G 282 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.76;MQ0=3;QD=15.67;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:36:315,36,0 chrVI 8910 . C A 1351 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.74;MQ0=8;QD=21.44;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1384,150,0 chrVI 8922 . G A 2093 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.68;MQ0=10;QD=21.36;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2126,228,0 chrVI 8939 . C G 3562.01 filter AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.4106;MLEAC=2;MLEAF=1.00;MQ=32.16;MQ0=14;QD=20.12;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,171:177:99:3562,399,0 chrVI 9052 . T C 960 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=20.11;MQ0=5;QD=12.31;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,77:78:99:993,117,0 chrVI 9067 . G C 172.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.273;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=17.66;MQ0=5;MQRankSum=-0.579;QD=7.82;ReadPosRankSum=1.273;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,19:22:3:202,3,0 chrVI 9106 . T G 237 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=14;Dels=0.00;FS=11.461;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;MQRankSum=1.488;QD=16.93;ReadPosRankSum=1.240;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:1,13:14:30:270,30,0 chrVI 9205 . G A 1241 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.67;MQ0=63;QD=9.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1274,135,0 chrVI 9210 . T C 1030 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.79;MQ0=58;QD=8.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1063,120,0 chrVI 9225 . T C 649 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.235;DP=87;Dels=0.00;FS=50.489;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.06;MQ0=45;MQRankSum=2.549;QD=7.46;ReadPosRankSum=3.235;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,82:87:81:682,81,0 chrVI 9286 . G A 76.51 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.38;MQ0=38;QD=1.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:12:109,12,0 chrVI 10430 . T G 1856 filter AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=16.33;MQ0=151;QD=7.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:1889,210,0 chrVI 10580 . A G 1790 filter AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=11.6076;MLEAC=2;MLEAF=1.00;MQ=15.72;MQ0=169;QD=6.39;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,278:280:99:1823,213,0 chrVI 10669 . A G 2249 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=243;Dels=0.00;FS=6.107;HaplotypeScore=19.9991;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=107;MQRankSum=0.652;QD=9.26;ReadPosRankSum=2.948;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:3,240:243:99:2282,255,0 chrVI 10690 . A T 801 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.180;DP=141;Dels=0.00;FS=46.663;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.65;MQ0=107;MQRankSum=1.310;QD=5.68;ReadPosRankSum=3.180;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,137:141:90:834,90,0 chrVI 10843 . C T 1147 filter AC=2;AF=1.00;AN=2;DP=203;Dels=0.02;FS=0.000;HaplotypeScore=5.2885;MLEAC=2;MLEAF=1.00;MQ=17.58;MQ0=91;QD=5.65;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,194:199:99:1180,129,0 chrVI 10844 . C T 1144 filter AC=2;AF=1.00;AN=2;DP=197;Dels=0.02;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=17.67;MQ0=88;QD=5.81;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,192:193:99:1177,129,0 chrVI 10940 . T C 1346 filter AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=20.37;MQ0=71;QD=9.28;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:1,143:145:99:1379,153,0 chrVI 10955 . G A 853 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.67;MQ0=65;QD=7.23;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:96:886,96,0 chrVI 10993 . G A 154.06 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.74;MQ0=36;QD=2.48;SB=-5.494e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:21:187,21,0 chrVI 11006 . A G 95.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=50;Dels=0.00;FS=14.523;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.68;MQ0=15;MQRankSum=-1.457;QD=1.91;ReadPosRankSum=2.310;SB=-7.924e+01 GT:AD:DP:GQ:PL 1/1:2,48:50:15:128,15,0 chrVI 11023 . G A 123.13 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.69;MQ0=13;QD=2.32;SB=-1.031e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:18:156,18,0 chrVI 11034 . A G 424 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=29.27;MQ0=14;QD=6.24;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:54:457,54,0 chrVI 11064 . A G 2352 filter AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=125.2437;MLEAC=2;MLEAF=1.00;MQ=37.41;MQ0=10;QD=11.94;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,192:197:99:2385,273,0 chrVI 11104 . G A 2264 filter AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=5.4811;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=36;QD=9.09;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:2297,255,0 chrVI 11107 . C T 2346 filter AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=9.4245;MLEAC=2;MLEAF=1.00;MQ=30.40;MQ0=41;QD=9.06;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:2379,267,0 chrVI 11260 . T C 3350.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.773;DP=262;Dels=0.01;FS=18.583;HaplotypeScore=7.9786;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=56;MQRankSum=1.697;QD=12.79;ReadPosRankSum=2.835;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:5,252:259:99:3350,387,0 chrVI 11277 . T C 4778.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=314;Dels=0.00;FS=7.698;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=29.32;MQ0=42;MQRankSum=0.973;QD=15.22;ReadPosRankSum=2.404;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:2,311:314:99:4778,543,0 chrVI 11305 . G T 5881.01 filter AC=2;AF=1.00;AN=2;DP=384;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=21;QD=15.32;SB=-3.317e+03 GT:AD:DP:GQ:PL 1/1:0,383:384:99:5881,669,0 chrVI 11309 . C T 6702.01 filter AC=2;AF=1.00;AN=2;DP=388;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=31.96;MQ0=12;QD=17.27;SB=-3.550e+03 GT:AD:DP:GQ:PL 1/1:0,388:388:99:6702,741,0 chrVI 11404 . A G 3134 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=467;Dels=0.00;FS=16.275;HaplotypeScore=35.7892;MLEAC=2;MLEAF=1.00;MQ=15.28;MQ0=192;MQRankSum=-2.724;QD=6.71;ReadPosRankSum=2.938;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:4,461:467:99:3167,366,0 chrVI 11547 . G A 2547 filter AC=2;AF=1.00;AN=2;DP=364;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=16.22;MQ0=190;QD=7.00;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,363:364:99:2580,285,0 chrVI 11581 . T C 2203 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.019;DP=443;Dels=0.00;FS=31.799;HaplotypeScore=25.2611;MLEAC=2;MLEAF=1.00;MQ=14.65;MQ0=284;MQRankSum=-0.235;QD=4.97;ReadPosRankSum=4.450;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:8,432:443:99:2236,255,0 chrVI 11630 . C T 13033.01 filter AC=2;AF=1.00;AN=2;DP=714;Dels=0.00;FS=0.000;HaplotypeScore=28.8680;MLEAC=2;MLEAF=1.00;MQ=20.38;MQ0=160;QD=18.25;SB=-7.199e+03 GT:AD:DP:GQ:PL 1/1:0,714:714:99:13033,1447,0 chrVI 12085 . A G 3395.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.670;DP=267;Dels=0.00;FS=9.388;HaplotypeScore=17.1868;MLEAC=2;MLEAF=1.00;MQ=21.94;MQ0=81;MQRankSum=0.054;QD=12.72;ReadPosRankSum=2.919;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:3,264:267:99:3395,393,0 chrVI 12112 . C T 397.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.193;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=12.90;MQ0=83;MQRankSum=-0.771;QD=3.82;ReadPosRankSum=0.000;SB=-2.699e+01 GT:AD:DP:GQ:PL 1/1:1,100:104:27:430,27,0 chrVI 12139 . C T 564 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.42;MQ0=10;QD=17.62;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:63:597,63,0 chrVI 12151 . A G 531 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=20.71;MQ0=32;QD=8.17;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:2,61:65:63:564,63,0 chrVI 12416 . T A 9402.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.203;DP=405;Dels=0.00;FS=14.235;HaplotypeScore=1.8583;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=9;MQRankSum=1.356;QD=23.21;ReadPosRankSum=4.203;SB=-4.576e+03 GT:AD:DP:GQ:PL 1/1:6,399:405:99:9402,1027,0 chrVI 12436 . G A 10500.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=448;Dels=0.00;FS=0.000;HaplotypeScore=2.8681;MLEAC=2;MLEAF=1.00;MQ=36.10;MQ0=21;MQRankSum=-0.732;QD=23.44;ReadPosRankSum=0.681;SB=-5.507e+03 GT:AD:DP:GQ:PL 1/1:2,444:446:99:10500,1089,0 chrVI 12450 . A G 9016.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.841;DP=436;Dels=0.00;FS=12.113;HaplotypeScore=1.9601;MLEAC=2;MLEAF=1.00;MQ=34.80;MQ0=52;MQRankSum=-1.359;QD=20.68;ReadPosRankSum=3.841;SB=-4.834e+03 GT:AD:DP:GQ:PL 1/1:7,425:436:99:9016,1029,0 chrVI 12535 . C G 420 filter AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.73;MQ0=221;QD=1.72;SB=-6.584e-03 GT:AD:DP:GQ:PL 1/1:0,241:244:51:453,51,0 chrVI 13013 . T C 1087.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.669;DP=468;Dels=0.00;FS=0.631;HaplotypeScore=4.9447;MLEAC=1;MLEAF=0.500;MQ=10.78;MQ0=298;MQRankSum=-1.103;QD=2.32;ReadPosRankSum=2.134;SB=-2.230e+02 GT:AD:DP:GQ:PL 0/1:174,294:468:99:1117,0,431 chrVI 13396 . C T 687 filter AC=2;AF=1.00;AN=2;DP=445;DS;Dels=0.00;FS=0.000;HaplotypeScore=7.2473;MLEAC=2;MLEAF=1.00;MQ=8.81;MQ0=350;QD=1.54;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,437:445:93:720,93,0 chrVI 13603 . G T 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;DP=491;Dels=0.00;FS=19.313;HaplotypeScore=13.5235;MLEAC=1;MLEAF=0.500;MQ=4.35;MQ0=457;MQRankSum=2.389;QD=0.05;ReadPosRankSum=-0.210;SB=-5.149e-03 GT:AD:DP:GQ:PL 0/1:358,131:491:53:53,0,78 chrVI 13997 . G T 2188 filter AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.9942;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=38;QD=11.96;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,179:183:99:2221,243,0 chrVI 15354 . A G 2932 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2965,330,0 chrVI 15708 . T C 3511.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.1628;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3511,402,0 chrVI 15971 . A T 2259 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.35;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2292,249,0 chrVI 16075 . C A 2612 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.41;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2645,285,0 chrVI 16654 . G A 2614 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2647,285,0 chrVI 16824 . A C 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=159;Dels=0.00;FS=8.960;HaplotypeScore=14.1761;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.162;QD=23.00;ReadPosRankSum=2.388;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3657,417,0 chrVI 17210 . A C 4606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.917;QD=22.36;ReadPosRankSum=1.664;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:1,203:206:99:4606,525,0 chrVI 17394 . C T 4031.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.5926;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.26;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4031,427,0 chrVI 17399 . A G 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-1.321;QD=18.49;ReadPosRankSum=1.714;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3588,414,0 chrVI 17653 . A G 2823 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.58;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2856,318,0 chrVI 17963 . C T 4592.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.5601;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.08;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4592,504,0 chrVI 17987 . C T 3968.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.80;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3968,435,0 chrVI 18011 . C T 3316.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=19.39;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3316,363,0 chrVI 18128 . A G 4000.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=16.4963;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.20;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4000,453,0 chrVI 18281 . C T 4317.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.98;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4317,456,0 chrVI 18339 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.1879;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.42;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3598,399,0 chrVI 18546 . A G 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=136;Dels=0.00;FS=3.039;HaplotypeScore=9.1314;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.949;QD=21.53;ReadPosRankSum=2.359;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2961,342,0 chrVI 18731 . C T 3009 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6954;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.07;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3042,333,0 chrVI 18810 . G C 2908 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.72;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2941,330,0 chrVI 18856 . A G 2373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=108;Dels=0.00;FS=6.932;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.244;QD=21.97;ReadPosRankSum=2.403;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:2,104:108:99:2406,270,0 chrVI 19004 . A G 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=127;Dels=0.00;FS=2.580;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.088;QD=20.24;ReadPosRankSum=2.896;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:3,123:127:99:2603,297,0 chrVI 19068 . A G 2448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=1.295;QD=23.77;ReadPosRankSum=1.665;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2481,276,0 chrVI 19095 . A G 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=1.005;QD=23.11;ReadPosRankSum=1.697;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2390,267,0 chrVI 19183 . C T 2423 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=23.52;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2456,264,0 chrVI 19346 . C T 1845 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=19.63;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1878,207,0 chrVI 19392 . T C 1984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.596;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=-0.488;QD=19.26;ReadPosRankSum=1.564;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2017,231,0 chrVI 19414 . G A 1848 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=19.45;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1881,210,0 chrVI 19498 . G A 2244 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.6855;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=24.39;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2277,249,0 chrVI 19590 . G A 1710 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.66;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1743,195,0 chrVI 19604 . A T 1623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=88;Dels=0.00;FS=6.592;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=-1.090;QD=18.44;ReadPosRankSum=2.365;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1656,180,0 chrVI 19605 . A G 1529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=3.274;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;MQRankSum=0.346;QD=17.78;ReadPosRankSum=1.651;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1562,180,0 chrVI 19616 . C T 1606 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;QD=18.46;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1639,177,0 chrVI 19711 . C T 1850 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.67;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1883,201,0 chrVI 19923 . T C 2270 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=22.93;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2303,252,0 chrVI 19942 . A G 2154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=3.872;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=0.450;QD=21.54;ReadPosRankSum=1.697;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2187,249,0 chrVI 20049 . A G 3015 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=23.74;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3048,342,0 chrVI 20122 . A G 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=3.078;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-1.279;QD=23.43;ReadPosRankSum=1.705;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3102,348,0 chrVI 20162 . T C 2660 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=21.80;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2693,297,0 chrVI 20170 . A G 2641 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.6545;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=22.38;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2674,294,0 chrVI 20266 . T G 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;DP=83;Dels=0.00;FS=20.355;HaplotypeScore=202.0183;MLEAC=1;MLEAF=0.500;MQ=42.87;MQ0=0;MQRankSum=0.840;QD=0.25;ReadPosRankSum=-2.124;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,3:83:51:51,0,131 chrVI 20268 . G A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.346;DP=85;Dels=0.00;FS=20.829;HaplotypeScore=200.0672;MLEAC=1;MLEAF=0.500;MQ=42.98;MQ0=0;MQRankSum=1.012;QD=0.14;ReadPosRankSum=-2.489;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,3:85:42:42,0,177 chrVI 20288 . G C 1672 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=20.14;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1705,189,0 chrVI 20296 . C A 1755 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=21.14;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1788,195,0 chrVI 20390 . A G 2051 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=23.31;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2084,231,0 chrVI 20451 . A G 1375 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=19.64;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1408,162,0 chrVI 20567 . A C 691 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.82;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:81:724,81,0 chrVI 20569 . G A 686 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.72;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:78:719,78,0 chrVI 20573 . T A 693 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.14;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:78:726,78,0 chrVI 20574 . G A 684 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.96;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:78:717,78,0 chrVI 20580 . T C 673 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.02;FS=3.245;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=29.81;MQ0=0;MQRankSum=1.246;QD=11.60;ReadPosRankSum=1.672;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:78:706,78,0 chrVI 20595 . A T 972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=66;Dels=0.05;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=35.48;MQ0=0;MQRankSum=0.907;QD=14.73;ReadPosRankSum=1.677;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1005,111,0 chrVI 20636 . C T 1237 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=60.5398;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=18.19;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1270,135,0 chrVI 20729 . T G 2116 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=23.51;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2149,240,0 chrVI 20768 . C T 1761 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=20.01;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1794,195,0 chrVI 20774 . T C 1459 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;QD=18.47;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1492,168,0 chrVI 20817 . T C 1563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;MQRankSum=-0.265;QD=18.39;ReadPosRankSum=1.691;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1596,180,0 chrVI 20856 . A C 1924 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=15.77;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:1957,225,0 chrVI 20866 . G A 2299 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=17.55;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2332,249,0 chrVI 20921 . T C 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=19.0495;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-1.506;QD=18.34;ReadPosRankSum=1.707;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2601,297,0 chrVI 21123 . A T 4055.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=23.99;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4055,438,0 chrVI 21171 . A T 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.773;DP=147;Dels=0.00;FS=9.489;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.959;QD=22.90;ReadPosRankSum=2.938;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3367,366,0 chrVI 21247 . G A 3829.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.76;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3829,405,0 chrVI 21267 . A G 3719.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.01;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3719,414,0 chrVI 21408 . G A 3359.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.5747;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3359,372,0 chrVI 21480 . A G 3843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=182;Dels=0.00;FS=6.068;HaplotypeScore=10.6410;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.277;QD=21.12;ReadPosRankSum=2.961;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:3,175:182:99:3843,441,0 chrVI 21594 . G T 4194.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.53;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4194,459,0 chrVI 21939 . T C 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=186;Dels=0.00;FS=3.610;HaplotypeScore=19.3504;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.471;QD=20.65;ReadPosRankSum=1.713;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3840,435,0 chrVI 22014 . C T 3894.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.28;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3894,420,0 chrVI 22204 . C G 3452.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.80;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3452,396,0 chrVI 22311 . C A 3225.28 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.9815;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=17.06;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3258,351,0 chrVI 22399 . C A 4054.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.8765;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.27;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4054,435,0 chrVI 24134 . T C 4660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=210;Dels=0.00;FS=6.426;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.605;QD=22.19;ReadPosRankSum=2.414;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:4660,519,0 chrVI 24214 . G T 5428.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=19.9543;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.07;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5428,591,0 chrVI 24311 . C T 4700.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.93;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4700,513,0 chrVI 24368 . G A 3908.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.7105;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.46;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3908,432,0 chrVI 24565 . T G 3619.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0585;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=20.11;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3619,417,0 chrVI 24574 . C T 3118 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=17.42;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3151,348,0 chrVI 24577 . T C 3459.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=18.11;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3459,384,0 chrVI 24682 . T C 5569.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=14.1482;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.73;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5569,639,0 chrVI 24900 . A G 4958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=217;Dels=0.00;FS=2.935;HaplotypeScore=20.4496;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.995;QD=22.85;ReadPosRankSum=2.427;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:4958,552,0 chrVI 25147 . A G 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.2867;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.009;QD=20.81;ReadPosRankSum=2.312;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3029,345,0 chrVI 25192 . G A 2722 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.72;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2755,297,0 chrVI 25195 . C T 2664 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=18.89;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2697,291,0 chrVI 25276 . C A 2521 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=12.5076;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=23.78;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2554,276,0 chrVI 25531 . T C 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=92;Dels=0.00;FS=3.056;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;MQRankSum=-1.325;QD=16.71;ReadPosRankSum=2.209;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1570,177,0 chrVI 25542 . G A 1824 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=18.80;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1857,201,0 chrVI 25547 . T G 1754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=3.050;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;MQRankSum=-0.792;QD=17.37;ReadPosRankSum=2.352;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1787,198,0 chrVI 25593 . A C 2501 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.3643;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.54;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2534,285,0 chrVI 25771 . G A 2431 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.04;FS=0.000;HaplotypeScore=19.9410;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;QD=21.71;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2464,261,0 chrVI 25858 . G A 2238 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=19.81;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2271,243,0 chrVI 25860 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=19.65;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2234,249,0 chrVI 25898 . A G 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=3.832;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;MQRankSum=-1.653;QD=18.84;ReadPosRankSum=1.692;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1672,186,0 chrVI 25946 . C T 1575 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=0;QD=14.06;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1608,174,0 chrVI 25962 . G A 1414 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.56;MQ0=0;QD=12.62;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1447,159,0 chrVI 25963 . A G 1380 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;QD=12.21;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1413,159,0 chrVI 25966 . A T 1470 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=34.50;MQ0=0;QD=11.95;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1503,165,0 chrVI 25976 . A T 1714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=145;Dels=0.00;FS=11.626;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=38.27;MQ0=0;MQRankSum=0.285;QD=11.82;ReadPosRankSum=2.952;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:1747,192,0 chrVI 26029 . A G 2816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=152;Dels=0.00;FS=7.973;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;MQRankSum=-0.671;QD=18.53;ReadPosRankSum=2.385;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2849,318,0 chrVI 26058 . G A 2782 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=17.28;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2815,312,0 chrVI 26062 . T C 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=163;Dels=0.00;FS=5.463;HaplotypeScore=4.7689;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;MQRankSum=-1.537;QD=18.04;ReadPosRankSum=2.932;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:2973,339,0 chrVI 26111 . C G 2656 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9820;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=18.32;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2689,303,0 chrVI 26127 . C T 2731 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.71;MQ0=0;QD=17.51;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2764,309,0 chrVI 26156 . G T 3112 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=116.3851;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=0;QD=19.21;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3145,345,0 chrVI 26216 . T C 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=176;Dels=0.00;FS=7.050;HaplotypeScore=14.5196;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=0.063;QD=17.98;ReadPosRankSum=2.295;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3198,360,0 chrVI 26364 . T A 3168 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8581;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.98;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3201,357,0 chrVI 26443 . C G 3546.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7440;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.88;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3546,393,0 chrVI 26594 . A T 24.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=152;Dels=0.00;FS=6.895;HaplotypeScore=140.7395;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=-1.253;QD=0.16;ReadPosRankSum=2.385;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:6:56,6,0 chrVI 26601 . G A 3001 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=19.36;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3034,333,0 chrVI 26701 . A C 2541 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.35;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2574,291,0 chrVI 26740 . C A 2930 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=20.35;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2963,327,0 chrVI 26765 . A C 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.503;QD=22.45;ReadPosRankSum=1.905;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3368,372,0 chrVI 27008 . G A 3690.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.78;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3690,411,0 chrVI 28373 . G A 4383.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.3919;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.22;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4383,474,0 chrVI 29161 . T G 4510.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.9468;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.11;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4510,510,0 chrVI 29440 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=23.51;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3409,384,0 chrVI 29449 . G A 3023 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=24.38;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3056,330,0 chrVI 29452 . G A 2756 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=21.36;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2789,306,0 chrVI 29637 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=17.98;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:2946,318,0 chrVI 29670 . G A 1906 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.95;MQ0=0;QD=15.50;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1939,210,0 chrVI 29678 . G A 1765 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.59;MQ0=0;QD=15.09;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1798,198,0 chrVI 29683 . G T 1646 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;QD=13.95;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1679,180,0 chrVI 29691 . G T 1515 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.9722;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;QD=13.53;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1548,171,0 chrVI 29703 . C G 1617 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=0;QD=13.15;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1650,189,0 chrVI 29729 . T A 2527 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=17.07;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2560,279,0 chrVI 29733 . G C 2431 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=14.91;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2464,285,0 chrVI 29769 . T C 2871 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=16.13;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:2904,336,0 chrVI 29775 . A G 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;MQRankSum=1.268;QD=16.83;ReadPosRankSum=1.713;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3046,345,0 chrVI 29838 . A T 315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=80.0135;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;MQRankSum=-0.192;QD=2.46;ReadPosRankSum=1.705;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:39:348,39,0 chrVI 29933 . A C 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=138;Dels=0.00;FS=10.689;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;MQRankSum=2.052;QD=21.17;ReadPosRankSum=2.948;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:3,132:138:99:2954,330,0 chrVI 30616 . T C 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=168;Dels=0.00;FS=15.714;HaplotypeScore=14.8181;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.719;QD=22.40;ReadPosRankSum=2.898;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3763,429,0 chrVI 30960 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7141;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.30;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3021,324,0 chrVI 31760 . C T 3966.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.33;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3966,435,0 chrVI 31946 . A C 3786.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.67;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3786,423,0 chrVI 32155 . A G 2410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-0.852;QD=18.68;ReadPosRankSum=1.622;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,125:129:99:2443,276,0 chrVI 32162 . G A 2579 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.15;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2612,279,0 chrVI 32198 . T C 2214 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=19.25;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2247,252,0 chrVI 32230 . C T 2702 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.90;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2735,294,0 chrVI 32523 . A G 2444 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=208.2392;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=20.71;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2477,270,0 chrVI 32539 . T C 2285 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.87;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2318,258,0 chrVI 32698 . G A 2354 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.60;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2387,258,0 chrVI 32785 . G T 3172 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.32;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3205,348,0 chrVI 34508 . G A 3058 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.25;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3091,336,0 chrVI 34667 . T A 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=3.171;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.669;QD=20.83;ReadPosRankSum=1.701;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2324,261,0 chrVI 34741 . T G 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2569;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.016;QD=22.09;ReadPosRankSum=1.703;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2728,312,0 chrVI 34793 . T C 3969.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.20;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3969,444,0 chrVI 34967 . T C 4529.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.87;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4529,510,0 chrVI 35202 . G A 5252.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.9110;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.14;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:5252,567,0 chrVI 35310 . G A 5796.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=6.7068;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=20.55;SB=-3.643e+03 GT:AD:DP:GQ:PL 1/1:0,280:282:99:5796,630,0 chrVI 35313 . C T 5585.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=6.3565;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=20.16;SB=-3.533e+03 GT:AD:DP:GQ:PL 1/1:0,273:277:99:5585,604,0 chrVI 35514 . A G 4880.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.79;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4880,546,0 chrVI 35662 . T C 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=161;Dels=0.00;FS=3.176;HaplotypeScore=16.1423;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.953;QD=19.43;ReadPosRankSum=1.667;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3161,357,0 chrVI 35789 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=18.30;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3331,384,0 chrVI 35905 . A C 2347 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=20.41;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2380,267,0 chrVI 35915 . C T 2453 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=21.15;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2486,267,0 chrVI 35940 . A T 2794 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.17;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2827,303,0 chrVI 35968 . G A 2904 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.45;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2937,315,0 chrVI 36075 . A G 2577 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.81;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2610,291,0 chrVI 36198 . G A 3218.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.75;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3251,351,0 chrVI 36358 . T C 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=162;Dels=0.00;FS=3.021;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.842;QD=23.23;ReadPosRankSum=2.374;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3763,423,0 chrVI 36568 . G A 2750 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2783,297,0 chrVI 36925 . G T 2914 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.0764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2947,327,0 chrVI 37497 . A G 2668 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=20.68;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2701,297,0 chrVI 37504 . T C 2660 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.15;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2693,300,0 chrVI 37537 . A G 2614 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=16.97;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2647,291,0 chrVI 37545 . G A 2547 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.72;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:2580,276,0 chrVI 37588 . C A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.51;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3671,393,0 chrVI 38137 . A T 3342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=139;Dels=0.00;FS=7.725;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.561;QD=24.04;ReadPosRankSum=2.396;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3342,363,0 chrVI 38255 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2803,306,0 chrVI 38909 . A G 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=150;Dels=0.00;FS=3.921;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-0.328;QD=19.05;ReadPosRankSum=1.709;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:2890,324,0 chrVI 38918 . T C 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-1.288;QD=19.03;ReadPosRankSum=1.665;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3021,342,0 chrVI 39374 . C T 2874 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.98;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2907,315,0 chrVI 39488 . G A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.8034;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.41;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4065,441,0 chrVI 40139 . A G 3916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.433;QD=22.38;ReadPosRankSum=1.712;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3916,450,0 chrVI 40189 . A G 3458.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7953;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.05;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3458,381,0 chrVI 40232 . A C 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.140;DP=145;Dels=0.00;FS=2.908;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.421;QD=19.85;ReadPosRankSum=2.415;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:2911,321,0 chrVI 40564 . C T 3710.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.8248;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3710,405,0 chrVI 40603 . T C 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=178;Dels=0.00;FS=8.479;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.103;QD=19.24;ReadPosRankSum=2.422;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3424,381,0 chrVI 40771 . G A 2780 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9791;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2813,300,0 chrVI 40841 . G A 2582 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.7278;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.69;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2615,288,0 chrVI 41032 . G A 2848 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2881,309,0 chrVI 41132 . G A 3007 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.68;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3040,339,0 chrVI 41461 . A C 4045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=3.163;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.692;QD=23.11;ReadPosRankSum=1.712;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4045,456,0 chrVI 41500 . G A 3957.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.41;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3957,429,0 chrVI 41688 . G A 3697.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.16;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3697,402,0 chrVI 41791 . A G 2455 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.46;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2488,276,0 chrVI 42346 . A G 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.255;DP=164;Dels=0.00;FS=8.409;HaplotypeScore=16.9191;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.338;QD=20.47;ReadPosRankSum=3.363;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:4,159:164:99:3357,387,0 chrVI 42562 . T C 1805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=82;Dels=0.00;FS=4.461;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.535;QD=22.01;ReadPosRankSum=1.647;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1838,207,0 chrVI 42633 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=23.84;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1797,198,0 chrVI 42842 . G A 2994 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.4585;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.85;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,127:131:99:3027,339,0 chrVI 42901 . T C 3153 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.3728;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.85;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3186,360,0 chrVI 43072 . A G 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4098;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.656;QD=23.81;ReadPosRankSum=1.689;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3834,426,0 chrVI 43129 . T C 3498.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.00;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3498,390,0 chrVI 43169 . C T 3870.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.4868;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.04;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3870,420,0 chrVI 43198 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.46;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3824,426,0 chrVI 43673 . G A 4237.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.68;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4237,453,0 chrVI 43907 . G A 4425.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.41;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4425,483,0 chrVI 43976 . A G 4095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=186;Dels=0.00;FS=2.997;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.631;QD=22.02;ReadPosRankSum=2.383;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4095,471,0 chrVI 44192 . A G 3838.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=18.0557;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.85;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3838,435,0 chrVI 44724 . A G 5409.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.73;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5409,621,0 chrVI 44748 . T C 4989.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.14;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:4989,561,0 chrVI 44770 . T C 4749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=236;Dels=0.00;FS=3.009;HaplotypeScore=8.3931;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=-1.233;QD=20.12;ReadPosRankSum=2.408;SB=-3.017e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:4749,522,0 chrVI 44835 . T C 4511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=254;Dels=0.00;FS=11.657;HaplotypeScore=8.4600;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.417;QD=17.76;ReadPosRankSum=2.925;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:3,250:254:99:4511,519,0 chrVI 44841 . C T 4978.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=20.66;SB=-2.790e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:4978,537,0 chrVI 45217 . A G 5265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=249;Dels=0.00;FS=5.819;HaplotypeScore=15.2721;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.286;QD=21.14;ReadPosRankSum=2.875;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:3,246:249:99:5265,594,0 chrVI 45941 . T C 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=230;Dels=0.00;FS=6.925;HaplotypeScore=16.9580;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.447;QD=19.68;ReadPosRankSum=2.428;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:2,226:230:99:4527,507,0 chrVI 46778 . A G 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.3234;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.081;QD=21.54;ReadPosRankSum=1.714;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4157,465,0 chrVI 46863 . T C 3133 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.01;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.10;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3166,360,0 chrVI 46872 . C T 3075 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=18.52;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3108,333,0 chrVI 47034 . A G 4486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=3.732;HaplotypeScore=17.8070;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.601;QD=22.89;ReadPosRankSum=1.714;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4486,501,0 chrVI 47833 . T C 5091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;MQRankSum=0.163;QD=23.90;ReadPosRankSum=1.699;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:5091,570,0 chrVI 48016 . T A 3296.01 SnpCluster AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=34.53;MQ0=0;QD=14.46;SB=-3.031e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:3296,360,0 chrVI 48019 . A T 2962 SnpCluster AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=34.30;MQ0=0;QD=13.22;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:2995,336,0 chrVI 48022 . A C 2620 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=220;Dels=0.00;FS=3.007;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.71;MQ0=0;MQRankSum=-0.329;QD=11.91;ReadPosRankSum=2.427;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:2653,306,0 chrVI 48036 . G C 2322 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;QD=10.90;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:2355,264,0 chrVI 48049 . G C 2531 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=37.59;MQ0=0;QD=11.66;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:2564,288,0 chrVI 48052 . G T 2739 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=38.52;MQ0=0;QD=12.51;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:2772,300,0 chrVI 48096 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=17.73;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3635,405,0 chrVI 49768 . G C 2785 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.75;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2818,315,0 chrVI 49774 . C T 2921 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=20.28;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2954,318,0 chrVI 49838 . A T 3510.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.40;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3510,381,0 chrVI 50410 . T C 5391.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=13.7262;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.34;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5391,597,0 chrVI 50512 . G A 4900.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.5478;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.02;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4900,528,0 chrVI 50685 . T C 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=4.519;HaplotypeScore=6.6413;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.113;QD=20.44;ReadPosRankSum=1.676;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:3781,417,0 chrVI 50708 . C T 3736.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.4585;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.42;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3736,405,0 chrVI 50825 . C T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3703,396,0 chrVI 51333 . A G 3800.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.68;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3800,426,0 chrVI 51603 . G A 3876.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.21;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3876,423,0 chrVI 52648 . T C 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=5.010;HaplotypeScore=18.4156;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.629;QD=21.15;ReadPosRankSum=1.670;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3553,408,0 chrVI 52838 . G A 2033 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.64;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2066,222,0 chrVI 53077 . T A 1974 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2007,216,0 chrVI 54858 . A G 1938 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.78;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1971,222,0 chrVI 55864 . A G 5318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=27.6074;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.275;QD=18.79;ReadPosRankSum=2.939;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:3,279:283:99:5318,606,0 chrVI 56298 . C T 4645.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8015;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.97;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4645,496,0 chrVI 56854 . G A 6308.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=17.2303;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.68;SB=-3.606e+03 GT:AD:DP:GQ:PL 1/1:0,291:291:99:6308,685,0 chrVI 57870 . A G 550 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.15;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:66:583,66,0 chrVI 58170 . T C 1510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.027;QD=23.23;ReadPosRankSum=1.679;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1543,174,0 chrVI 61622 . T C 5192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=14.0639;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.079;QD=23.71;ReadPosRankSum=1.716;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:5192,579,0 chrVI 63394 . C G 4605.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.38;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,220:226:99:4605,531,0 chrVI 63602 . A T 4932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=216;Dels=0.00;FS=3.031;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.461;QD=22.83;ReadPosRankSum=2.381;SB=-2.804e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:4932,537,0 chrVI 64032 . G A 2525 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.9834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2558,279,0 chrVI 64279 . G A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3294,363,0 chrVI 64321 . A G 3647.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3647,411,0 chrVI 64442 . G C 4189.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.02;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4189,468,0 chrVI 64877 . T C 2814 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.88;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2847,321,0 chrVI 65029 . T A 2601 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8128;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.98;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2634,282,0 chrVI 65065 . A G 2598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.389;QD=21.30;ReadPosRankSum=1.703;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2631,300,0 chrVI 65094 . C T 2632 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2630;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.50;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2665,285,0 chrVI 65123 . A T 2282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.4996;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=1.512;QD=20.75;ReadPosRankSum=1.228;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2315,261,0 chrVI 65183 . C T 3180 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.27;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3213,351,0 chrVI 65500 . A G 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=208;Dels=0.00;FS=3.617;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-1.314;QD=20.08;ReadPosRankSum=1.699;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4176,468,0 chrVI 65504 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=19.04;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3828,432,0 chrVI 65802 . T G 4354.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=19.8424;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.06;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4354,489,0 chrVI 66118 . A G 4230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=183;Dels=0.00;FS=12.265;HaplotypeScore=15.1219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.984;QD=23.11;ReadPosRankSum=2.962;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:3,180:183:99:4230,477,0 chrVI 66151 . A G 4954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=209;Dels=0.00;FS=4.488;HaplotypeScore=14.4789;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.066;QD=23.70;ReadPosRankSum=1.715;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4954,552,0 chrVI 66190 . T C 4728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.699;DP=210;Dels=0.01;FS=7.825;HaplotypeScore=39.5782;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.630;QD=22.51;ReadPosRankSum=3.752;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:5,201:208:99:4728,531,0 chrVI 66355 . C G 4338.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.9625;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.80;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,195:199:99:4338,495,0 chrVI 66607 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2526;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.34;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3160,348,0 chrVI 66647 . A C 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=155;Dels=0.00;FS=8.472;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.490;QD=22.16;ReadPosRankSum=2.417;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:2,151:155:99:3435,390,0 chrVI 66666 . G A 3723.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.02;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3723,396,0 chrVI 66782 . C T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=14.7746;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.19;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3250,351,0 chrVI 67030 . A C 3772.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=20.39;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,181:185:99:3772,435,0 chrVI 67042 . A C 4030.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.2452;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.15;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4030,453,0 chrVI 67330 . G A 4767.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.1303;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.47;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4767,525,0 chrVI 67471 . G A 4181.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.8247;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.45;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4181,453,0 chrVI 67732 . C A 3009 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=22.12;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3042,327,0 chrVI 67738 . A G 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-1.437;QD=19.77;ReadPosRankSum=1.708;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,140:144:99:2880,324,0 chrVI 68194 . C T 4316.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=21.16;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4316,465,0 chrVI 68200 . A G 3966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=211;Dels=0.00;FS=4.856;HaplotypeScore=9.1975;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=-0.067;QD=18.80;ReadPosRankSum=1.566;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,207:211:99:3966,441,0 chrVI 68236 . G A 4376.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=18.46;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:4376,501,0 chrVI 68323 . A G 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=204;Dels=0.00;FS=3.369;HaplotypeScore=5.9544;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.257;QD=18.50;ReadPosRankSum=1.715;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:3775,432,0 chrVI 68326 . A G 3846.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=18.95;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3846,432,0 chrVI 68375 . A G 4421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=230;Dels=0.00;FS=2.935;HaplotypeScore=12.8921;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=0.197;QD=19.22;ReadPosRankSum=2.343;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:2,228:230:99:4421,498,0 chrVI 68557 . G A 3315.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=22.86;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3315,357,0 chrVI 68669 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=18.37;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1760,189,0 chrVI 68671 . T G 1559 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=16.95;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1592,183,0 chrVI 68758 . T C 1307 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.76;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1340,147,0 chrVI 68816 . A G 681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.633;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.572;QD=18.92;ReadPosRankSum=2.805;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:3,33:36:78:714,78,0 chrVI 68825 . A G 785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=-0.702;QD=21.22;ReadPosRankSum=1.639;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:93:818,93,0 chrVI 68888 . A G 663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=-1.733;QD=22.86;ReadPosRankSum=1.614;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:1,28:29:75:696,75,0 chrVI 68994 . A G 581 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=25.26;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:69:614,69,0 chrVI 69208 . G A 2295 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=23.18;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2328,249,0 chrVI 69214 . T G 2230 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.44;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2263,252,0 chrVI 69321 . G C 4163.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.4346;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=22.87;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,178:182:99:4163,465,0 chrVI 69412 . A G 3963.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=24.02;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3963,441,0 chrVI 69547 . G A 3194 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=19.24;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3227,369,0 chrVI 69559 . T C 2858 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=17.75;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:2891,324,0 chrVI 69586 . A G 2293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;MQRankSum=-0.449;QD=14.15;ReadPosRankSum=1.689;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:2326,261,0 chrVI 69598 . T A 2178 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;QD=13.12;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2211,249,0 chrVI 69625 . C T 1773 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=11.29;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:1806,195,0 chrVI 69634 . G A 1716 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=11.07;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,150:155:99:1749,192,0 chrVI 69682 . C T 3013 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=18.48;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3046,327,0 chrVI 69706 . G C 3279.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.24;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3279,372,0 chrVI 69817 . T C 5010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=17.9964;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.598;QD=21.97;ReadPosRankSum=1.717;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:1,225:228:99:5010,564,0 chrVI 70057 . C T 4317.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.9888;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.14;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4317,462,0 chrVI 70237 . G A 4055.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4055,447,0 chrVI 70957 . T C 2577 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.43;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2610,288,0 chrVI 71470 . G A 5677.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=20.87;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:5677,612,0 chrVI 71473 . T C 5092.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=18.93;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,268:269:99:5092,594,0 chrVI 71500 . G A 5045.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=18.75;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:0,265:269:99:5045,549,0 chrVI 71509 . G A 5057.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=18.39;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:5057,558,0 chrVI 71596 . C T 5348.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=18.1656;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5348,600,0 chrVI 71702 . A G 4305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-1.017;QD=22.78;ReadPosRankSum=1.695;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4305,495,0 chrVI 71733 . G A 4410.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.9200;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.62;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4410,474,0 chrVI 72064 . C T 3692.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.9065;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3692,399,0 chrVI 72397 . C T 5036.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=22.58;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5036,555,0 chrVI 72412 . T A 5221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=3.1346;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.885;QD=22.80;ReadPosRankSum=1.672;SB=-3.010e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5221,579,0 chrVI 72490 . A G 5262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=14.1014;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-1.233;QD=20.96;ReadPosRankSum=1.704;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:1,249:251:99:5262,606,0 chrVI 72553 . C T 5091.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.70;SB=-3.216e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5091,544,0 chrVI 72559 . C A 4718.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.34;SB=-3.144e+03 GT:AD:DP:GQ:PL 1/1:0,241:244:99:4718,516,0 chrVI 72794 . C G 4480.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.86;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4480,504,0 chrVI 73033 . T C 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=173;Dels=0.00;FS=6.075;HaplotypeScore=8.2321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.843;QD=20.59;ReadPosRankSum=2.913;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3562,405,0 chrVI 73288 . G A 2041 filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2074,228,0 chrVI 74497 . G A 132.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301;DP=121;Dels=0.00;FS=1.819;HaplotypeScore=5.7489;MLEAC=1;MLEAF=0.500;MQ=53.15;MQ0=0;MQRankSum=0.584;QD=1.09;ReadPosRankSum=-5.933;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:93,28:121:99:162,0,497 chrVI 74499 . G A 582.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.603;DP=123;Dels=0.00;FS=0.898;HaplotypeScore=5.5642;MLEAC=1;MLEAF=0.500;MQ=53.48;MQ0=0;MQRankSum=1.773;QD=4.73;ReadPosRankSum=6.861;SB=-8.780e+02 GT:AD:DP:GQ:PL 0/1:27,96:123:38:612,0,38 chrVI 74661 . C G 2110 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=10.3487;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=22.45;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2143,240,0 chrVI 74825 . A C 1632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.424;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;MQRankSum=-1.372;QD=17.00;ReadPosRankSum=2.347;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1665,174,0 chrVI 74844 . A G 1372 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;QD=14.75;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1405,162,0 chrVI 74850 . A T 1322 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=15.20;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1355,156,0 chrVI 74858 . A G 1320 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=15.90;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1353,156,0 chrVI 74862 . A G 1285 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=15.48;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1318,153,0 chrVI 75054 . A G 1862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=5.903;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;MQRankSum=-1.192;QD=16.93;ReadPosRankSum=1.637;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:1895,213,0 chrVI 75055 . A T 1824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=5.980;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;MQRankSum=-0.340;QD=17.05;ReadPosRankSum=1.700;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1857,204,0 chrVI 75069 . G A 1574 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.83;MQ0=0;QD=13.69;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1607,177,0 chrVI 75101 . A G 1661 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=40.20;MQ0=0;QD=10.19;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,160:163:99:1694,189,0 chrVI 75434 . C T 5958.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.64;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,247:252:99:5958,645,0 chrVI 75453 . C T 6039.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=23.8398;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.20;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:6039,663,0 chrVI 76021 . A G 2342 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.52;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2375,267,0 chrVI 76047 . T C 2315 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.15;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2348,261,0 chrVI 76126 . T C 2145 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.49;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2178,252,0 chrVI 76268 . G T 2510 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.61;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2543,273,0 chrVI 76442 . G A 1597 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1630,180,0 chrVI 76807 . T C 4305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=15.3731;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.167;QD=21.74;ReadPosRankSum=1.714;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4305,480,0 chrVI 76851 . G A 3875.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.9558;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=22.14;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3875,423,0 chrVI 76860 . C T 3739.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.4670;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.74;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3739,399,0 chrVI 76914 . T C 3731.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.9653;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.17;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3731,417,0 chrVI 77256 . G A 6357.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.64;SB=-3.218e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:6357,693,0 chrVI 77650 . A C 5434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=235;Dels=0.00;FS=10.891;HaplotypeScore=17.0635;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.712;QD=23.12;ReadPosRankSum=2.961;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:3,231:235:99:5434,606,0 chrVI 77736 . A G 4726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=213;Dels=0.00;FS=6.767;HaplotypeScore=11.4208;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.075;QD=22.19;ReadPosRankSum=2.415;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4726,537,0 chrVI 77976 . G A 2454 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=19.95;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2487,267,0 chrVI 78202 . A G 5554.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=23.84;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5554,645,0 chrVI 78249 . C T 6388.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=10.7115;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=23.93;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:6388,694,0 chrVI 78568 . A G 5342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=232;Dels=0.00;FS=3.222;HaplotypeScore=13.6930;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.442;QD=23.03;ReadPosRankSum=1.702;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:5342,600,0 chrVI 78750 . G A 4000.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.94;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4000,435,0 chrVI 78805 . G T 3574.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3574,393,0 chrVI 78930 . A G 4490.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.9616;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.14;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4490,501,0 chrVI 79343 . G C 3591.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.87;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:3591,405,0 chrVI 79488 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5224;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.24;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3603,405,0 chrVI 79755 . T C 4560.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=19.32;SB=-2.762e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:4560,504,0 chrVI 79758 . T C 4431.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=18.70;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:0,234:237:99:4431,495,0 chrVI 79809 . A G 4443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=233;Dels=0.00;FS=6.305;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.216;QD=19.07;ReadPosRankSum=2.397;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:4443,495,0 chrVI 80049 . G A 4194.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.56;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4194,453,0 chrVI 80232 . T C 2945 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=22.14;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2978,333,0 chrVI 80328 . T A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=24.30;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3354,360,0 chrVI 81803 . C T 4078.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.4172;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.42;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4078,435,0 chrVI 81880 . C G 3108 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.2543;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3141,354,0 chrVI 83900 . T C 2082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.098;DP=98;Dels=0.00;FS=2.834;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.746;QD=21.24;ReadPosRankSum=0.590;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2115,217,0 chrVI 84334 . A C 2555 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.22;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2588,297,0 chrVI 85356 . T C 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=168;Dels=0.00;FS=2.876;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-0.599;QD=19.63;ReadPosRankSum=2.405;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3297,366,0 chrVI 85362 . C G 3121 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=18.47;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3154,357,0 chrVI 85688 . G C 3275.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3275,366,0 chrVI 86721 . G T 4364.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4364,466,0 chrVI 87400 . C T 2548 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.38;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2581,279,0 chrVI 88396 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=146;Dels=0.00;FS=5.706;HaplotypeScore=11.1208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.269;QD=22.11;ReadPosRankSum=2.952;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3262,369,0 chrVI 89126 . C T 4342.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.5982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.13;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4342,465,0 chrVI 90659 . C T 3815.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3815,420,0 chrVI 90736 . G C 2775 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.3637;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.56;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2808,312,0 chrVI 90767 . C T 2991 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.52;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3024,324,0 chrVI 92236 . A G 3160 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=22.73;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3193,354,0 chrVI 92421 . T C 479 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.74;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,26:27:63:512,63,0 chrVI 92446 . A G 129.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.473;DP=37;Dels=0.00;FS=12.324;HaplotypeScore=12.8305;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;MQRankSum=-0.974;QD=3.49;ReadPosRankSum=-2.866;SB=-2.141e+02 GT:AD:DP:GQ:PL 1/1:3,34:37:18:162,18,0 chrVI 92462 . G A 833 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=11.57;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:90:866,90,0 chrVI 92476 . G A 1182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.259;DP=145;Dels=0.00;FS=4.869;HaplotypeScore=46.1730;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.836;QD=8.15;ReadPosRankSum=2.877;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:19,122:145:99:1215,138,0 chrVI 92487 . C A 392.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.417;DP=161;Dels=0.00;FS=12.502;HaplotypeScore=59.2825;MLEAC=1;MLEAF=0.500;MQ=30.05;MQ0=0;MQRankSum=0.507;QD=2.43;ReadPosRankSum=0.207;SB=-8.270e+02 GT:AD:DP:GQ:PL 0/1:69,92:161:99:422,0,681 chrVI 92502 . G A 1643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.447;DP=180;Dels=0.00;FS=6.079;HaplotypeScore=92.0575;MLEAC=2;MLEAF=1.00;MQ=30.39;MQ0=0;MQRankSum=1.062;QD=9.13;ReadPosRankSum=2.883;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:1676,186,0 chrVI 92510 . G T 912.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.008;DP=210;Dels=0.00;FS=19.248;HaplotypeScore=198.0135;MLEAC=1;MLEAF=0.500;MQ=31.22;MQ0=0;MQRankSum=0.132;QD=4.34;ReadPosRankSum=1.911;SB=-3.030e+02 GT:AD:DP:GQ:PL 0/1:142,68:210:99:942,0,595 chrVI 92517 . A C 220.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.259;DP=220;Dels=0.00;FS=9.787;HaplotypeScore=80.5746;MLEAC=1;MLEAF=0.500;MQ=31.88;MQ0=0;MQRankSum=-0.502;QD=1.00;ReadPosRankSum=-2.631;SB=-1.730e+02 GT:AD:DP:GQ:PL 0/1:170,49:220:99:250,0,1538 chrVI 92534 . A G 1737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-6.137;DP=200;Dels=0.00;FS=19.521;HaplotypeScore=140.3095;MLEAC=2;MLEAF=1.00;MQ=33.25;MQ0=0;MQRankSum=0.382;QD=8.68;ReadPosRankSum=7.920;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:32,168:200:99:1770,201,0 chrVI 92559 . A G 676.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.438;DP=140;Dels=0.00;FS=18.158;HaplotypeScore=63.0581;MLEAC=1;MLEAF=0.500;MQ=34.00;MQ0=0;MQRankSum=-0.491;QD=4.83;ReadPosRankSum=-1.117;SB=-4.830e+02 GT:AD:DP:GQ:PL 0/1:56,84:140:99:706,0,499 chrVI 92570 . A G 1703 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.9681;MLEAC=2;MLEAF=1.00;MQ=33.99;MQ0=0;QD=12.61;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1736,198,0 chrVI 92573 . A G 1415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.167;DP=135;Dels=0.00;FS=4.819;HaplotypeScore=1.9681;MLEAC=2;MLEAF=1.00;MQ=33.99;MQ0=0;MQRankSum=-0.073;QD=10.48;ReadPosRankSum=-2.408;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:19,116:135:83:1448,83,0 chrVI 92605 . T C 1307 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.40;MQ0=0;QD=14.21;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1340,159,0 chrVI 92623 . T G 1383 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.36;MQ0=0;QD=16.27;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1416,168,0 chrVI 92735 . T A 481 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.009;DP=138;Dels=0.00;FS=4.155;HaplotypeScore=211.9946;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;MQRankSum=2.661;QD=3.49;ReadPosRankSum=-7.331;SB=3.00 GT:AD:DP:GQ:PL 1/1:109,28:138:60:514,60,0 chrVI 92770 . G A 2215 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=18.16;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2248,246,0 chrVI 92797 . T C 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=0.109;QD=17.59;ReadPosRankSum=1.576;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1986,225,0 chrVI 93077 . A C 4575.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=17.8963;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.89;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:0,227:230:99:4575,519,0 chrVI 93184 . A C 5107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=217;Dels=0.00;FS=7.730;HaplotypeScore=13.8139;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=1.858;QD=23.53;ReadPosRankSum=2.404;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:5107,573,0 chrVI 93235 . A G 3697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.827;QD=21.01;ReadPosRankSum=1.712;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3697,414,0 chrVI 93244 . C G 3287.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.8367;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=19.45;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,163:169:99:3287,378,0 chrVI 93280 . C T 2695 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=16.23;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:2728,303,0 chrVI 93846 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.017;DP=158;Dels=0.00;FS=3.643;HaplotypeScore=11.2879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.129;QD=21.28;ReadPosRankSum=-0.101;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3363,340,0 chrVI 94111 . G A 4149.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.0493;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.44;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4149,459,0 chrVI 95002 . G A 1489 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.09;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1522,162,0 chrVI 95248 . T A 780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.080;DP=67;Dels=0.04;FS=4.778;HaplotypeScore=38.7361;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=-0.638;QD=11.64;ReadPosRankSum=4.872;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:10,54:64:67:813,67,0 chrVI 95249 . T A 776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.733;DP=66;Dels=0.03;FS=2.328;HaplotypeScore=33.6255;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=0.558;QD=11.76;ReadPosRankSum=4.035;SB=-2.159e+02 GT:AD:DP:GQ:PL 1/1:7,57:64:67:809,67,0 chrVI 95387 . G C 2278 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.90;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2311,258,0 chrVI 95585 . T A 5531.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=20.64;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:5531,618,0 chrVI 95601 . T C 4436.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=17.53;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:4436,495,0 chrVI 95627 . A G 3465.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=13.13;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:3465,393,0 chrVI 95632 . G A 3413.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=8.6326;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=12.59;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:3413,372,0 chrVI 96502 . T C 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=9.809;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.673;QD=20.14;ReadPosRankSum=2.376;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3343,381,0 chrVI 97235 . T C 5410.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=17.0757;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.22;SB=-2.877e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5410,624,0 chrVI 97308 . G A 3935.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.1910;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=16.74;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:3935,426,0 chrVI 97759 . C A 1804 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.27;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1837,198,0 chrVI 97778 . A G 2006 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.26;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2039,228,0 chrVI 97975 . C T 3441.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.4539;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.41;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3441,387,0 chrVI 98578 . A T 2342 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=21.10;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2375,258,0 chrVI 98590 . A C 2251 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=20.28;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2284,258,0 chrVI 98654 . C G 1759 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;QD=18.13;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1792,201,0 chrVI 98671 . A G 1751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;MQRankSum=-1.270;QD=16.68;ReadPosRankSum=1.699;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1784,201,0 chrVI 98692 . C G 1619 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.81;MQ0=0;QD=14.08;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1652,189,0 chrVI 98744 . T C 531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=107;Dels=0.00;FS=6.088;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=37.46;MQ0=0;MQRankSum=-2.312;QD=4.96;ReadPosRankSum=2.897;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:3,104:107:63:564,63,0 chrVI 98747 . A T 630 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=38.10;MQ0=0;QD=5.62;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:69:663,69,0 chrVI 98785 . C T 1485 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=13.50;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1518,162,0 chrVI 98877 . T C 2244 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=21.79;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2277,252,0 chrVI 98885 . A T 2175 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;QD=19.95;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2208,249,0 chrVI 98938 . G A 1715 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.7919;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=19.49;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1748,192,0 chrVI 99039 . A G 1553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=1.176;QD=19.17;ReadPosRankSum=1.689;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1586,177,0 chrVI 99131 . T C 1487 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.65;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1520,174,0 chrVI 99555 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7776;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=23.60;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3611,387,0 chrVI 99594 . G A 3784.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.4408;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=22.52;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3784,417,0 chrVI 99734 . A G 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=184;Dels=0.00;FS=12.658;HaplotypeScore=20.5782;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.624;QD=23.73;ReadPosRankSum=2.382;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:4367,486,0 chrVI 99800 . C G 5063.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.8267;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.40;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,220:226:99:5063,561,0 chrVI 99817 . G A 4959.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.7758;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.64;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4959,531,0 chrVI 99895 . G A 5021.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.5876;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.46;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:5021,538,0 chrVI 100094 . C T 4805.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.67;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4805,513,0 chrVI 100276 . G T 3274.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3274,363,0 chrVI 100338 . T C 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=142;Dels=0.00;FS=11.166;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;MQRankSum=0.130;QD=21.58;ReadPosRankSum=2.892;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:3,137:142:99:3098,348,0 chrVI 100526 . G A 2738 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.82;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2771,312,0 chrVI 100715 . G A 2406 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.91;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2439,267,0 chrVI 100737 . T G 1815 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.39;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1848,207,0 chrVI 100756 . A G 1513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.444;DP=81;Dels=0.00;FS=7.684;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.834;QD=18.68;ReadPosRankSum=3.248;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:5,76:81:99:1546,174,0 chrVI 100827 . T C 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.469;QD=22.50;ReadPosRankSum=1.700;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2441,273,0 chrVI 100853 . T C 2622 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.5195;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.41;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2655,300,0 chrVI 100887 . G A 2614 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.34;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2647,291,0 chrVI 100932 . G A 2743 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.2728;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.43;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2776,309,0 chrVI 100946 . A C 2711 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.1620;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.79;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2744,309,0 chrVI 101107 . C T 4049.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.40;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4049,438,0 chrVI 101204 . G A 2412 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=19.93;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2445,261,0 chrVI 101210 . C T 2254 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=18.48;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2287,243,0 chrVI 101264 . A T 2758 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=21.05;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2791,297,0 chrVI 101295 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.80;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2933,321,0 chrVI 101296 . G A 3020 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=22.21;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3053,324,0 chrVI 101331 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.49;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2741,291,0 chrVI 101826 . G A 3963.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.4485;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.26;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3963,423,0 chrVI 101859 . G A 4191.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.6012;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.83;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4191,453,0 chrVI 101913 . A G 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.500;QD=20.53;ReadPosRankSum=1.709;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3092,357,0 chrVI 102880 . A T 6248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=278;Dels=0.00;FS=6.195;HaplotypeScore=19.1335;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.165;QD=22.47;ReadPosRankSum=2.370;SB=-3.548e+03 GT:AD:DP:GQ:PL 1/1:2,276:278:99:6248,684,0 chrVI 103503 . A G 4056.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=20.28;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4056,462,0 chrVI 103509 . C T 4321.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=20.58;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4321,468,0 chrVI 103545 . A G 3346.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;MQRankSum=-0.853;QD=16.56;ReadPosRankSum=1.715;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:3346,375,0 chrVI 103548 . G A 3427.01 SnpCluster AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=16.56;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:3427,372,0 chrVI 103553 . G A 3468.01 SnpCluster AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=16.59;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:3468,381,0 chrVI 103865 . A C 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.915;QD=18.62;ReadPosRankSum=1.654;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1690,189,0 chrVI 104321 . C A 3719.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.82;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3719,399,0 chrVI 104597 . T A 90.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.898;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=9.7185;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;MQRankSum=-0.787;QD=3.11;ReadPosRankSum=2.268;SB=-2.203e+02 GT:AD:DP:GQ:PL 1/1:2,26:28:15:123,15,0 chrVI 105370 . A G 7998.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.400;DP=366;Dels=0.00;FS=14.310;HaplotypeScore=30.2147;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.117;QD=21.85;ReadPosRankSum=3.347;SB=-4.049e+03 GT:AD:DP:GQ:PL 1/1:4,361:366:99:7998,921,0 chrVI 105427 . A G 7512.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=373;Dels=0.00;FS=0.000;HaplotypeScore=21.5462;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.391;QD=20.14;ReadPosRankSum=1.704;SB=-3.549e+03 GT:AD:DP:GQ:PL 1/1:1,371:373:99:7512,852,0 chrVI 106494 . C G 3138 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.26;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3171,357,0 chrVI 106792 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.4017;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2950,327,0 chrVI 106837 . C T 3651.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=60.91;MQ0=0;QD=25.71;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3651,396,0 chrVI 107101 . T A 2737 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.80;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2770,297,0 chrVI 107408 . T C 3944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=3.215;HaplotypeScore=10.8042;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.378;QD=22.54;ReadPosRankSum=1.712;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3944,453,0 chrVI 107743 . G A 1351 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.44;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1384,150,0 chrVI 108206 . C T 4039.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.3434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.56;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4039,441,0 chrVI 108272 . G A 2991 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.9501;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=18.35;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3024,342,0 chrVI 108299 . T C 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=0.702;QD=21.56;ReadPosRankSum=1.710;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3407,387,0 chrVI 108416 . C T 4625.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.2055;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.24;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4625,507,0 chrVI 108452 . A G 4757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=230;Dels=0.00;FS=12.977;HaplotypeScore=22.7481;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.617;QD=20.68;ReadPosRankSum=2.969;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:3,221:230:99:4757,552,0 chrVI 108518 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=19.90;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:3800,408,0 chrVI 108528 . T C 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-1.117;QD=17.64;ReadPosRankSum=1.662;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3476,393,0 chrVI 108536 . G A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=16.19;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3287,363,0 chrVI 108637 . C A 4339.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.48;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4339,468,0 chrVI 108834 . G C 2917 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.45;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2950,336,0 chrVI 109006 . C T 3211.99 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.31;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3245,354,0 chrVI 109031 . C T 2906 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.35;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2939,324,0 chrVI 109247 . T C 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.355;QD=22.54;ReadPosRankSum=1.661;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3314,375,0 chrVI 109402 . A C 3469.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.68;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3469,387,0 chrVI 109415 . G A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.1342;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.22;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,162:166:99:3523,378,0 chrVI 109958 . G A 3774.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.46;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3774,411,0 chrVI 110137 . G A 1772 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.1861;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=14.41;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:1805,201,0 chrVI 110330 . G T 1983 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=18.71;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2016,222,0 chrVI 110354 . A G 2692 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.71;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2725,300,0 chrVI 110405 . C T 3041 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.21;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3074,336,0 chrVI 110435 . C T 2472 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.32;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2505,264,0 chrVI 110527 . C G 2818 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=24.29;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2851,318,0 chrVI 110590 . T C 4383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=190;Dels=0.00;FS=2.791;HaplotypeScore=13.8809;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-1.371;QD=23.07;ReadPosRankSum=2.411;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4383,507,0 chrVI 110650 . C T 4482.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.68;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4482,475,0 chrVI 110685 . C T 3687.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.43;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3687,396,0 chrVI 110796 . G A 4106.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=20.84;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4106,447,0 chrVI 110814 . G T 3918.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=19.49;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3918,435,0 chrVI 111075 . A G 2404 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.90;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2437,273,0 chrVI 111162 . A G 2493 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.52;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2526,285,0 chrVI 111258 . T A 1839 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.77;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1872,198,0 chrVI 111264 . A C 1696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=3.663;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.322;QD=19.72;ReadPosRankSum=1.692;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1729,195,0 chrVI 111289 . G T 1528 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.19;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1561,171,0 chrVI 111378 . T A 2550 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.39;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2583,285,0 chrVI 111480 . T C 2036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.190;DP=102;Dels=0.00;FS=1.885;HaplotypeScore=21.1628;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.114;QD=19.96;ReadPosRankSum=-0.484;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:4,96:102:99:2069,234,0 chrVI 111571 . T A 2960 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7751;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=24.07;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2993,324,0 chrVI 111627 . T C 2518 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.89;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2551,285,0 chrVI 111687 . A G 3498.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=23.64;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3498,393,0 chrVI 111757 . C G 3124 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.03;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3157,354,0 chrVI 111847 . G A 3699.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.8079;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.41;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3699,396,0 chrVI 111948 . T C 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=0.370;QD=21.33;ReadPosRankSum=1.703;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,117:121:99:2614,291,0 chrVI 111956 . A G 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.080;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;MQRankSum=-0.467;QD=19.87;ReadPosRankSum=1.705;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2576,294,0 chrVI 111983 . C G 2854 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.53;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2887,321,0 chrVI 112069 . C T 2568 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.53;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2601,276,0 chrVI 112143 . T C 1109 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=18.18;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1142,132,0 chrVI 112154 . T C 1236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=7.056;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;MQRankSum=-0.052;QD=18.73;ReadPosRankSum=1.680;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1269,144,0 chrVI 112159 . A T 1506 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=20.08;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1539,168,0 chrVI 112214 . A G 1944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=0.304;QD=20.04;ReadPosRankSum=1.625;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1977,225,0 chrVI 112246 . G A 1556 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6671;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=19.45;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1589,174,0 chrVI 112349 . T C 1827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.6737;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-1.312;QD=19.03;ReadPosRankSum=2.925;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:3,91:96:99:1860,213,0 chrVI 112383 . C T 2343 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.69;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2376,258,0 chrVI 112417 . A G 1725 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=10.8493;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.54;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1758,192,0 chrVI 112425 . A G 1572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=9.345;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=0.765;QD=18.07;ReadPosRankSum=1.611;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1605,183,0 chrVI 112435 . A G 1497 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=18.95;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1530,171,0 chrVI 112767 . C T 3835.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.19;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3835,420,0 chrVI 112897 . A C 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.8685;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.227;QD=21.09;ReadPosRankSum=1.660;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,144:148:99:3155,363,0 chrVI 112984 . T C 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.1208;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.414;QD=19.78;ReadPosRankSum=1.680;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:2723,306,0 chrVI 113076 . C A 2438 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=12.8091;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.49;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2471,270,0 chrVI 113124 . G A 3101 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4599;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3134,342,0 chrVI 113238 . C T 2953 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=22.20;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2986,324,0 chrVI 113247 . T C 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.065;QD=21.63;ReadPosRankSum=1.706;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2910,324,0 chrVI 113328 . C T 4175.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.72;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4175,447,0 chrVI 113586 . C A 4309.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.04;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4309,477,0 chrVI 113778 . T C 2843 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.88;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2876,330,0 chrVI 113799 . C T 3088 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.75;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3121,333,0 chrVI 113847 . G A 3470.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=15.2770;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.82;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3470,375,0 chrVI 113910 . A G 3059 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.33;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3092,345,0 chrVI 114171 . A T 1912 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=14.6047;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.38;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1945,216,0 chrVI 114251 . T C 2105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.875;QD=20.64;ReadPosRankSum=1.698;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2138,240,0 chrVI 114275 . C G 2140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=0.352;QD=17.40;ReadPosRankSum=1.619;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2173,240,0 chrVI 114277 . T C 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=0.541;QD=16.90;ReadPosRankSum=1.705;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2213,252,0 chrVI 114340 . T C 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=170;Dels=0.00;FS=2.653;HaplotypeScore=9.3983;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.313;QD=20.85;ReadPosRankSum=2.406;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3544,399,0 chrVI 114541 . T C 4303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=205;Dels=0.00;FS=6.620;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.151;QD=20.99;ReadPosRankSum=2.425;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:2,201:205:99:4303,486,0 chrVI 114918 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.22;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3100,339,0 chrVI 115048 . A G 4223.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.7724;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.83;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4223,486,0 chrVI 115088 . T C 4503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=2.242;QD=22.29;ReadPosRankSum=2.425;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:4503,504,0 chrVI 115119 . T C 3924.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=3.7075;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=18.42;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,213:213:99:3924,450,0 chrVI 115181 . G A 1943 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.05;FS=0.000;HaplotypeScore=102.6261;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;QD=7.96;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,229:233:99:1976,216,0 chrVI 115235 . C T 8626.01 filter AC=2;AF=1.00;AN=2;DP=443;Dels=0.00;FS=0.000;HaplotypeScore=16.2467;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=19.47;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,443:443:99:8626,969,0 chrVI 115291 . C T 12025.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=492;Dels=0.00;FS=18.554;HaplotypeScore=35.5152;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.138;QD=24.44;ReadPosRankSum=2.368;SB=-3.081e+03 GT:AD:DP:GQ:PL 1/1:3,488:492:99:12025,1315,0 chrVI 115411 . A C 10499.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.160;DP=518;Dels=0.00;FS=7.355;HaplotypeScore=22.9934;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=1.811;QD=20.27;ReadPosRankSum=4.188;SB=-4.356e+03 GT:AD:DP:GQ:PL 1/1:6,510:518:99:10499,1200,0 chrVI 115494 . C G 9174.01 filter AC=2;AF=1.00;AN=2;DP=452;Dels=0.00;FS=0.000;HaplotypeScore=33.7288;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.30;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:1,446:452:99:9174,1041,0 chrVI 116037 . A G 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=188;Dels=0.00;FS=7.204;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.312;QD=21.98;ReadPosRankSum=2.423;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:2,183:188:99:4133,446,0 chrVI 116045 . T C 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.272;DP=204;Dels=0.00;FS=7.965;HaplotypeScore=12.5017;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-0.877;QD=20.53;ReadPosRankSum=3.357;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:4,200:204:99:4189,474,0 chrVI 116186 . C T 4742.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.0233;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.95;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4742,513,0 chrVI 116660 . T C 4680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=246;Dels=0.00;FS=14.640;HaplotypeScore=13.1523;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.642;QD=19.02;ReadPosRankSum=2.971;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:3,241:246:99:4680,528,0 chrVI 116752 . C T 4192.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.68;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4192,453,0 chrVI 116839 . G C 2691 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.61;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2724,303,0 chrVI 117560 . A G 4074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=189;Dels=0.00;FS=8.684;HaplotypeScore=13.8876;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=1;MQRankSum=-1.472;QD=21.56;ReadPosRankSum=2.800;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:5,184:189:99:4074,441,0 chrVI 117667 . A G 2913 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.634;DP=179;Dels=0.00;FS=74.594;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=36.84;MQ0=9;MQRankSum=4.741;QD=16.27;ReadPosRankSum=-2.173;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:31,148:179:55:2946,55,0 chrVI 117833 . G A 3576.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.9395;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=21.94;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3576,393,0 chrVI 118346 . A G 2312 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.89;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2345,255,0 chrVI 118499 . T C 2598 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.21;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2631,291,0 chrVI 118550 . C T 1723 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.51;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1756,192,0 chrVI 118563 . C A 1548 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.21;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1581,171,0 chrVI 118682 . T C 2051 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.59;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2084,237,0 chrVI 118701 . T C 2017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=3.303;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-0.038;QD=21.69;ReadPosRankSum=1.694;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2050,228,0 chrVI 118737 . C T 1778 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.17;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1811,198,0 chrVI 118792 . C A 2155 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.94;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2188,237,0 chrVI 118855 . T C 1954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=6.7193;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-1.398;QD=23.26;ReadPosRankSum=1.690;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1987,222,0 chrVI 119224 . G C 3003 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.0526;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.45;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3036,339,0 chrVI 119266 . C A 2523 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=18.97;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2556,282,0 chrVI 119276 . A G 2081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.388;DP=129;Dels=0.00;FS=15.539;HaplotypeScore=73.2573;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=-1.269;QD=16.13;ReadPosRankSum=3.332;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:4,123:129:99:2114,240,0 chrVI 119328 . T C 2231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.9316;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=1.112;QD=17.99;ReadPosRankSum=1.676;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2264,258,0 chrVI 119414 . G A 4128.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=25.02;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4128,441,0 chrVI 119659 . C T 3911.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.99;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3911,420,0 chrVI 119755 . G A 3629.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.03;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3629,387,0 chrVI 120163 . A G 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.480;QD=22.50;ReadPosRankSum=1.674;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2711,303,0 chrVI 120204 . T C 2612 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.1639;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.32;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2645,297,0 chrVI 120376 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.34;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2735,294,0 chrVI 120550 . C T 2699 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2732,297,0 chrVI 121054 . G A 4116.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.2485;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.87;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4116,441,0 chrVI 121195 . A G 4191.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.53;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4191,480,0 chrVI 121393 . A T 4364.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.1588;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.24;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4364,471,0 chrVI 121761 . T A 2578 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.0454;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.09;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2611,279,0 chrVI 122266 . T C 2577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=127;Dels=0.00;FS=2.850;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.920;QD=20.29;ReadPosRankSum=2.411;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2610,291,0 chrVI 124471 . T C 5009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=220;Dels=0.00;FS=3.021;HaplotypeScore=12.2400;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.171;QD=22.77;ReadPosRankSum=2.394;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:5009,573,0 chrVI 128175 . T C 4009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=178;Dels=0.00;FS=2.954;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.705;QD=22.52;ReadPosRankSum=2.408;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:4009,453,0 chrVI 128353 . G A 3950.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.83;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3950,423,0 chrVI 129074 . C T 2525 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2558,276,0 chrVI 130039 . G C 3348.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.26;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3348,372,0 chrVI 130852 . T C 5245.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=16.8941;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.21;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,222:226:99:5245,582,0 chrVI 131087 . T C 2098 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2627;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.05;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2131,234,0 chrVI 131200 . C T 1821 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1854,207,0 chrVI 131646 . T C 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.157;DP=152;Dels=0.00;FS=3.038;HaplotypeScore=9.8862;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.229;QD=21.93;ReadPosRankSum=1.066;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3333,353,0 chrVI 133255 . A G 3531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.732;QD=22.78;ReadPosRankSum=1.710;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3531,396,0 chrVI 133441 . A G 3647.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.38;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3647,411,0 chrVI 134123 . T G 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=159;Dels=0.00;FS=8.028;HaplotypeScore=10.1885;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.957;QD=22.22;ReadPosRankSum=2.418;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3533,396,0 chrVI 134929 . A G 3127 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.1461;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3160,354,0 chrVI 135041 . T C 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=161;Dels=0.00;FS=3.468;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.650;QD=22.01;ReadPosRankSum=1.710;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3544,396,0 chrVI 135481 . G A 2645 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.42;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2678,291,0 chrVI 135529 . T C 2361 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.71;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2394,273,0 chrVI 135660 . A C 3551.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3551,396,0 chrVI 135874 . G A 3653.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.88;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3653,396,0 chrVI 136273 . G T 2860 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.88;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2893,321,0 chrVI 136413 . T G 3376.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3376,375,0 chrVI 137579 . A C 3549.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.77;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3549,402,0 chrVI 143746 . T A 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.30;MQ0=101;QD=0.21;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:100,10:110:6:54,6,0 chrVI 143748 . G A 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.33;MQ0=100;QD=0.21;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:94,15:109:6:54,6,0 chrVI 143749 . C T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.45;MQ0=97;QD=0.22;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:96,9:106:6:55,6,0 chrVI 143750 . A G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.49;MQ0=96;QD=0.23;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:96,9:105:6:55,6,0 chrVI 143757 . C A 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.48;MQ0=88;QD=0.22;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:87,21:108:6:55,6,0 chrVI 143762 . A G 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.90;MQ0=81;QD=0.48;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:81,20:101:9:81,9,0 chrVI 143763 . T A 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.90;MQ0=81;QD=0.49;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:81,20:101:9:82,9,0 chrVI 143765 . G A 53.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.10;MQ0=78;QD=0.55;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:78,20:98:9:86,9,0 chrVI 143795 . T C 52.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.579;DP=85;Dels=0.00;FS=34.661;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.98;MQ0=58;MQRankSum=0.887;QD=0.62;ReadPosRankSum=2.739;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:60,24:85:9:85,9,0 chrVI 143802 . A G 50.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.816;DP=78;Dels=0.00;FS=34.661;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.69;MQ0=51;MQRankSum=0.887;QD=0.65;ReadPosRankSum=1.659;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:54,24:78:9:83,9,0 chrVI 143803 . C T 53.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.507;DP=77;Dels=0.00;FS=34.661;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.79;MQ0=50;MQRankSum=0.887;QD=0.70;ReadPosRankSum=1.582;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:53,24:77:9:86,9,0 chrVI 143808 . C A 51.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.347;DP=69;Dels=0.00;FS=34.661;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.74;MQ0=42;MQRankSum=0.887;QD=0.75;ReadPosRankSum=0.579;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:44,25:69:9:84,9,0 chrVI 143811 . A T 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=65;Dels=0.00;FS=34.661;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.28;MQ0=38;MQRankSum=0.887;QD=0.66;ReadPosRankSum=-0.501;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:41,24:65:9:75,9,0 chrVI 143829 . A C 48.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.741;DP=29;Dels=0.00;FS=30.569;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=23.36;MQ0=9;MQRankSum=0.847;QD=1.69;ReadPosRankSum=-2.752;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:12,17:29:9:81,9,0 chrVI 144681 . T A 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.112;QD=23.21;ReadPosRankSum=2.948;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:3,132:135:99:3166,345,0 chrVI 145636 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.475;QD=22.49;ReadPosRankSum=1.709;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3329,372,0 chrVI 146335 . A T 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=114;Dels=0.00;FS=9.148;HaplotypeScore=13.2925;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.549;QD=23.83;ReadPosRankSum=2.903;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2750,291,0 chrVI 147171 . C G 3133 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.22;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3166,357,0 chrVI 147466 . G A 5203.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.44;SB=-2.902e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5203,564,0 chrVI 147986 . G A 2964 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.9681;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.80;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2997,327,0 chrVI 148358 . G A 2134 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.70;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2167,231,0 chrVI 148573 . G A 51.97 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=6.50;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:84,9,0 chrVI 148854 . A G 2109 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.52;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2142,243,0 chrVI 149450 . C T 4056.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.58;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4056,435,0 chrVI 149493 . A G 4820.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.3919;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.34;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4820,537,0 chrVI 149833 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3160,336,0 chrVI 153323 . T A 4532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=0.471;QD=22.00;ReadPosRankSum=1.715;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4532,489,0 chrVI 153342 . A G 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=202;Dels=0.00;FS=3.347;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=-0.664;QD=19.01;ReadPosRankSum=1.698;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:3840,432,0 chrVI 153360 . A G 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=226;Dels=0.00;FS=4.177;HaplotypeScore=4.3203;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=-0.346;QD=15.84;ReadPosRankSum=1.686;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:3580,402,0 chrVI 153368 . G A 3663.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=8.9704;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=15.46;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:3663,399,0 chrVI 153440 . G A 4721.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=14.0375;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=18.88;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:4721,516,0 chrVI 153974 . G A 3145 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=21.11;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3178,333,0 chrVI 153977 . T C 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=153;Dels=0.00;FS=2.957;HaplotypeScore=4.1213;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=1.100;QD=19.34;ReadPosRankSum=2.417;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2992,330,0 chrVI 155241 . T G 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.072;QD=22.25;ReadPosRankSum=1.666;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2369,273,0 chrVI 156651 . G A 3965.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3965,426,0 chrVI 156928 . C T 4635.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.2384;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.77;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4635,495,0 chrVI 157155 . G A 4608.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.7884;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.39;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4608,498,0 chrVI 157913 . G A 2355 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.03;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2388,267,0 chrVI 158008 . T C 1810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=93;Dels=0.00;FS=2.912;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.781;QD=19.46;ReadPosRankSum=2.344;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1843,207,0 chrVI 158086 . T C 3324.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.57;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3324,372,0 chrVI 158322 . A G 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=149;Dels=0.00;FS=9.571;HaplotypeScore=9.6201;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.399;QD=23.02;ReadPosRankSum=2.912;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3430,381,0 chrVI 159554 . A G 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=3.610;HaplotypeScore=7.7865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.425;QD=23.94;ReadPosRankSum=1.704;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:3049,339,0 chrVI 159841 . T C 4125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=3.330;HaplotypeScore=6.5971;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.805;QD=22.54;ReadPosRankSum=1.713;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4125,468,0 chrVI 161287 . T A 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=3.476;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.117;QD=24.34;ReadPosRankSum=1.703;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2929,318,0 chrVI 161565 . A G 1843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.235;QD=22.75;ReadPosRankSum=1.689;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1876,210,0 chrVI 161630 . G A 1834 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.45;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1867,201,0 chrVI 161715 . A G 1974 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.99;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2007,225,0 chrVI 161895 . C T 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=129;Dels=0.00;FS=2.947;HaplotypeScore=11.8899;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=2.411;QD=22.43;ReadPosRankSum=-0.397;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:2,125:129:99:2927,300,0 chrVI 161967 . G C 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.223;DP=136;Dels=0.00;FS=3.701;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=1.707;QD=22.70;ReadPosRankSum=-0.102;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3120,351,0 chrVI 162872 . A G 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=162;Dels=0.00;FS=2.897;HaplotypeScore=8.4738;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.237;QD=22.25;ReadPosRankSum=2.404;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3605,402,0 chrVI 164557 . A G 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.109;QD=21.13;ReadPosRankSum=1.657;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2991,345,0 chrVI 165245 . A G 3273.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.2723;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.89;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3273,366,0 chrVI 166855 . C T 2962 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.08;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2995,321,0 chrVI 167410 . A G 1301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.376;QD=18.86;ReadPosRankSum=1.630;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1334,150,0 chrVI 168665 . A G 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=140;Dels=0.00;FS=2.869;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.764;QD=22.88;ReadPosRankSum=2.362;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3236,363,0 chrVI 168728 . A G 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=130;Dels=0.00;FS=2.785;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.917;QD=22.38;ReadPosRankSum=2.374;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2942,327,0 chrVI 168886 . A T 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.4692;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.637;QD=22.14;ReadPosRankSum=-0.779;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2468,270,0 chrVI 169392 . A G 3465.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=22.95;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3465,384,0 chrVI 169531 . A T 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=130;Dels=0.00;FS=3.027;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-0.993;QD=22.76;ReadPosRankSum=2.412;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2992,321,0 chrVI 169586 . T C 2062 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=36.69;MQ0=0;MQRankSum=1.585;QD=14.62;ReadPosRankSum=1.708;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2095,237,0 chrVI 169591 . T C 1875 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=0;QD=14.53;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:1908,216,0 chrVI 169592 . T C 1899 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.34;MQ0=0;MQRankSum=0.336;QD=14.72;ReadPosRankSum=1.652;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:1932,216,0 chrVI 169609 . C T 1532 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=12.56;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1565,168,0 chrVI 169614 . A G 1423 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=11.57;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1456,165,0 chrVI 169617 . T C 1345 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=11.70;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1378,153,0 chrVI 169618 . G A 1397 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=12.15;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1430,153,0 chrVI 169635 . A G 1393 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=10.88;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1426,159,0 chrVI 169641 . G A 1360 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.24;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1393,150,0 chrVI 169642 . C T 1343 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.10;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1376,150,0 chrVI 169649 . T G 1237 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.06;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1270,144,0 chrVI 169653 . G A 1304 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=179.7705;MLEAC=2;MLEAF=1.00;MQ=29.76;MQ0=0;QD=10.52;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1337,144,0 chrVI 169872 . A G 5882.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=11.7874;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=23.81;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,242:247:99:5882,654,0 chrVI 169900 . A C 5658.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=7.4730;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=23.38;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5658,639,0 chrVI 170021 . G A 4693.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.3080;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4693,499,0 chrVI 170209 . G A 4069.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4980;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4069,447,0 chrVI 170497 . T C 3944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.7746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.647;QD=24.20;ReadPosRankSum=1.668;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3944,444,0 chrVI 170686 . T C 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=162;Dels=0.00;FS=9.700;HaplotypeScore=12.6034;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.769;QD=22.40;ReadPosRankSum=2.919;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:3628,389,0 chrVI 171023 . A G 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.974;DP=153;Dels=0.00;FS=7.575;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.581;QD=23.25;ReadPosRankSum=2.384;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:2,148:153:99:3558,393,0 chrVI 171434 . C T 3660.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3660,390,0 chrVI 172612 . A G 3027 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.2862;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.88;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3060,342,0 chrVI 173233 . A G 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.352;QD=21.97;ReadPosRankSum=1.708;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3241,360,0 chrVI 173376 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.42;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2625,282,0 chrVI 173398 . C T 2591 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.90;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2624,279,0 chrVI 173500 . C T 3422.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.8469;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.62;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3422,366,0 chrVI 173599 . C T 3924.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.1019;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.37;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3924,429,0 chrVI 175153 . T C 3918.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.1620;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.26;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3918,438,0 chrVI 175342 . C A 2906 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=21.2574;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=18.28;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:2939,324,0 chrVI 175594 . A G 4340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=212;Dels=0.00;FS=4.105;HaplotypeScore=5.7197;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=0.796;QD=20.47;ReadPosRankSum=1.683;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4340,483,0 chrVI 175597 . G A 4216.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.0883;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=19.70;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,209:214:99:4216,471,0 chrVI 176340 . T C 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=3.632;HaplotypeScore=12.9305;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.478;QD=19.22;ReadPosRankSum=1.709;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:2935,330,0 chrVI 176884 . G A 2962 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2995,333,0 chrVI 177453 . A G 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.942;QD=19.73;ReadPosRankSum=1.671;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3393,387,0 chrVI 177516 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=23.28;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3468,372,0 chrVI 177750 . T A 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=3.430;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-1.687;QD=20.36;ReadPosRankSum=1.687;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3128,342,0 chrVI 177753 . T C 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=154;Dels=0.00;FS=6.397;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=1.077;QD=19.23;ReadPosRankSum=2.402;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:2994,336,0 chrVI 177798 . G A 3141 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.01;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3174,348,0 chrVI 177999 . T C 3480.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=19.89;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3480,387,0 chrVI 178043 . T C 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.891;DP=163;Dels=0.00;FS=14.693;HaplotypeScore=13.0002;MLEAC=2;MLEAF=1.00;MQ=38.46;MQ0=0;MQRankSum=2.703;QD=15.79;ReadPosRankSum=3.326;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:8,153:163:99:2607,291,0 chrVI 178052 . T C 2459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.290;DP=155;Dels=0.00;FS=15.179;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=37.05;MQ0=0;MQRankSum=3.364;QD=15.86;ReadPosRankSum=3.058;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:11,141:155:99:2492,276,0 chrVI 178054 . A T 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.696;DP=153;Dels=0.00;FS=34.481;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;MQRankSum=4.632;QD=16.17;ReadPosRankSum=3.057;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:12,141:153:99:2507,273,0 chrVI 178063 . G A 2530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.052;DP=164;Dels=0.00;FS=38.456;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=0;MQRankSum=5.425;QD=15.43;ReadPosRankSum=1.723;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:15,149:164:99:2563,276,0 chrVI 178083 . A G 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.731;DP=168;Dels=0.00;FS=46.625;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.36;MQ0=0;MQRankSum=6.803;QD=15.52;ReadPosRankSum=-0.792;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:18,150:168:99:2640,297,0 chrVI 178120 . A C 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.361;DP=203;Dels=0.00;FS=34.952;HaplotypeScore=12.4991;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=6.626;QD=16.59;ReadPosRankSum=-0.831;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:16,184:203:99:3368,378,0 chrVI 178237 . T C 2700 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.0451;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=1;QD=17.42;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2733,306,0 chrVI 178394 . T C 3480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=161;Dels=0.00;FS=7.731;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-0.668;QD=21.61;ReadPosRankSum=2.419;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3480,384,0 chrVI 178425 . G C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.21;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3269,363,0 chrVI 179064 . T C 3391.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.0728;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.33;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3391,378,0 chrVI 179094 . A G 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=149;Dels=0.00;FS=2.690;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.429;QD=18.79;ReadPosRankSum=2.349;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:2,144:149:99:2832,324,0 chrVI 179981 . T C 4300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=198;Dels=0.00;FS=3.429;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.760;QD=21.72;ReadPosRankSum=1.714;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4300,489,0 chrVI 180152 . C T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=17.5159;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.42;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3477,375,0 chrVI 180324 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.03;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2809,309,0 chrVI 180531 . C T 3068 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.45;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3101,330,0 chrVI 180546 . T C 3185 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.67;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3218,360,0 chrVI 180611 . G T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.51;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3399,375,0 chrVI 180627 . A G 3282.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.59;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3282,378,0 chrVI 180656 . C G 2997 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.26;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3030,342,0 chrVI 180840 . T C 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=134;Dels=0.00;FS=4.078;HaplotypeScore=9.7657;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-1.628;QD=22.80;ReadPosRankSum=1.680;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3088,342,0 chrVI 180970 . G T 1715 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=77.1210;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=18.44;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1748,192,0 chrVI 180971 . G A 1670 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=77.9097;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=17.58;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1703,192,0 chrVI 181059 . T C 2274 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.86;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2307,264,0 chrVI 181094 . A C 1869 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.6691;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=18.15;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1902,216,0 chrVI 181154 . A C 1847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;MQRankSum=0.033;QD=17.76;ReadPosRankSum=1.666;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1880,210,0 chrVI 181190 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3249;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=21.11;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2207,231,0 chrVI 181197 . C A 2182 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=21.82;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2215,240,0 chrVI 181248 . G A 1902 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=19.41;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1935,213,0 chrVI 181351 . G C 2972 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=21.08;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3005,342,0 chrVI 181357 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=21.12;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2969,324,0 chrVI 181370 . A G 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=148;Dels=0.00;FS=14.405;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;MQRankSum=-1.283;QD=17.76;ReadPosRankSum=2.911;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:3,143:148:99:2661,300,0 chrVI 181376 . G A 2836 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=19.56;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2869,309,0 chrVI 181417 . T A 2541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.291;DP=137;Dels=0.00;FS=2.425;HaplotypeScore=10.7163;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;MQRankSum=-1.359;QD=18.55;ReadPosRankSum=3.394;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:4,133:137:99:2574,285,0 chrVI 181494 . G A 4953.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.14;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4953,532,0 chrVI 181559 . T G 3999.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.9360;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=21.16;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3999,453,0 chrVI 181586 . A G 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=153;Dels=0.00;FS=2.991;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=0.639;QD=20.16;ReadPosRankSum=2.336;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3118,354,0 chrVI 181596 . T G 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=164;Dels=0.00;FS=7.684;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=-1.386;QD=18.85;ReadPosRankSum=2.375;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3124,351,0 chrVI 181692 . A G 4246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.278;DP=183;Dels=0.00;FS=5.225;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-0.625;QD=23.20;ReadPosRankSum=3.402;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:4,179:183:99:4246,474,0 chrVI 181733 . T G 3415.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.39;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3415,390,0 chrVI 181766 . A G 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.277;DP=137;Dels=0.00;FS=8.378;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.798;QD=22.64;ReadPosRankSum=3.341;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:4,132:137:99:3135,354,0 chrVI 181817 . A G 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=124;Dels=0.00;FS=5.879;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.320;QD=21.66;ReadPosRankSum=2.910;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:3,120:124:99:2719,309,0 chrVI 181852 . A G 2742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.9568;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.145;QD=20.77;ReadPosRankSum=1.706;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2775,318,0 chrVI 181971 . G C 2475 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=17.43;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2508,285,0 chrVI 181998 . T A 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=144;Dels=0.00;FS=2.576;HaplotypeScore=11.6907;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-1.218;QD=19.09;ReadPosRankSum=2.923;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:4,140:144:99:2782,306,0 chrVI 182036 . T C 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=137;Dels=0.00;FS=2.711;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.172;QD=21.85;ReadPosRankSum=2.341;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3026,345,0 chrVI 182063 . T A 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.592;QD=21.90;ReadPosRankSum=1.676;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2771,312,0 chrVI 182354 . T C 5220.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=221;Dels=0.00;FS=2.716;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.546;QD=23.62;ReadPosRankSum=2.427;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:2,218:221:99:5220,585,0 chrVI 182440 . C T 5343.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.29;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5343,603,0 chrVI 182459 . A G 5975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=283;Dels=0.00;FS=9.313;HaplotypeScore=20.7804;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.168;QD=21.11;ReadPosRankSum=2.918;SB=-3.544e+03 GT:AD:DP:GQ:PL 1/1:3,278:283:99:5975,684,0 chrVI 182769 . A G 4600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.4531;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.728;QD=22.01;ReadPosRankSum=1.699;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4600,525,0 chrVI 182910 . A G 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;MQRankSum=0.561;QD=9.49;ReadPosRankSum=1.699;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:1,206:207:99:1997,219,0 chrVI 182992 . C T 1822 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=84.7744;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.18;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1855,204,0 chrVI 183446 . C T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=18.20;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:3967,423,0 chrVI 183467 . A G 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=216;Dels=0.00;FS=5.342;HaplotypeScore=4.9589;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;MQRankSum=-1.304;QD=17.01;ReadPosRankSum=2.967;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:3,212:216:99:3675,411,0 chrVI 183476 . A G 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.166;DP=204;Dels=0.00;FS=10.791;HaplotypeScore=3.4250;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=-2.467;QD=17.65;ReadPosRankSum=4.054;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:6,198:204:99:3600,405,0 chrVI 183482 . C T 3522.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=18.06;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3522,381,0 chrVI 183764 . G A 6694.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=7.4261;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.82;SB=-3.097e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:6694,709,0 chrVI 183941 . A G 6791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=348;Dels=0.00;FS=6.764;HaplotypeScore=22.0831;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-1.019;QD=19.51;ReadPosRankSum=2.400;SB=-3.562e+03 GT:AD:DP:GQ:PL 1/1:2,346:348:99:6791,797,0 chrVI 184000 . C G 5533.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=20.5513;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=19.90;SB=-3.007e+03 GT:AD:DP:GQ:PL 1/1:0,274:278:99:5533,618,0 chrVI 184083 . G A 5094.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=16.4565;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.49;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5094,558,0 chrVI 184158 . T C 5971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=316;Dels=0.00;FS=3.616;HaplotypeScore=12.0142;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=-1.644;QD=18.90;ReadPosRankSum=1.721;SB=-3.593e+03 GT:AD:DP:GQ:PL 1/1:1,314:316:99:5971,681,0 chrVI 184168 . C T 6537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=334;Dels=0.00;FS=3.568;HaplotypeScore=11.3345;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;MQRankSum=-0.522;QD=19.57;ReadPosRankSum=0.365;SB=-3.886e+03 GT:AD:DP:GQ:PL 1/1:1,331:334:99:6537,691,0 chrVI 184225 . T C 3655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=242;Dels=0.00;FS=3.028;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=44.12;MQ0=0;MQRankSum=-0.759;QD=15.10;ReadPosRankSum=2.399;SB=-2.956e+03 GT:AD:DP:GQ:PL 1/1:2,239:242:99:3655,423,0 chrVI 184226 . T G 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;MQRankSum=-0.411;QD=14.87;ReadPosRankSum=1.703;SB=-2.904e+03 GT:AD:DP:GQ:PL 1/1:1,235:239:99:3555,405,0 chrVI 184277 . C T 3857.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=16.55;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:3857,414,0 chrVI 184289 . C G 3690.01 SnpCluster AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=17.08;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:3690,411,0 chrVI 184291 . T C 3677.01 SnpCluster AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=16.49;SB=-2.797e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:3677,408,0 chrVI 184295 . C T 4020.01 SnpCluster AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=17.33;SB=-2.988e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:4020,432,0 chrVI 184476 . C T 6843.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=22.8151;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=23.68;SB=-3.201e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:6843,742,0 chrVI 184513 . A T 6899.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=14.3970;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.92;SB=-3.340e+03 GT:AD:DP:GQ:PL 1/1:0,301:301:99:6899,748,0 chrVI 184798 . C T 5940.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=22.1443;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.37;SB=-3.204e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:5940,645,0 chrVI 184844 . T A 5964.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=21.3147;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.45;SB=-3.208e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:5964,660,0 chrVI 184878 . G A 6718.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=15.7274;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.57;SB=-3.535e+03 GT:AD:DP:GQ:PL 1/1:0,284:285:99:6718,724,0 chrVI 185002 . C T 6624.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=27.7269;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-3.262e+03 GT:AD:DP:GQ:PL 1/1:0,313:314:99:6624,732,0 chrVI 185546 . G A 7412.01 PASS AC=2;AF=1.00;AN=2;DP=351;Dels=0.00;FS=0.000;HaplotypeScore=17.6223;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.12;SB=-4.516e+03 GT:AD:DP:GQ:PL 1/1:0,348:351:99:7412,807,0 chrVI 186111 . T C 2468 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.7978;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=16.45;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2501,294,0 chrVI 186936 . T C 3589.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3589,402,0 chrVI 187771 . G A 2177 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.1269;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.19;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2210,234,0 chrVI 188023 . T C 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.364;DP=155;Dels=0.00;FS=10.176;HaplotypeScore=8.8189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.219;QD=22.10;ReadPosRankSum=4.390;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:7,148:155:99:3426,384,0 chrVI 188077 . C T 3737.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3737,399,0 chrVI 188203 . C T 3645.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.64;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3645,399,0 chrVI 188423 . C T 2992 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=21.37;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3025,339,0 chrVI 188428 . T G 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=0.543;QD=20.26;ReadPosRankSum=1.680;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2768,315,0 chrVI 188704 . G A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=24.34;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3822,414,0 chrVI 189156 . G T 5861.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.98;SB=-2.839e+03 GT:AD:DP:GQ:PL 1/1:0,253:255:99:5861,648,0 chrVI 189828 . A C 3207 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.24;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3240,360,0 chrVI 189847 . G A 3140 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.36;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3173,345,0 chrVI 190072 . T C 4144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=184;Dels=0.00;FS=3.058;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.094;QD=22.52;ReadPosRankSum=1.713;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4144,474,0 chrVI 190129 . A G 3751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.189;DP=179;Dels=0.00;FS=3.004;HaplotypeScore=13.5589;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.981;QD=20.96;ReadPosRankSum=2.395;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3751,420,0 chrVI 190170 . T C 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.556;QD=21.41;ReadPosRankSum=1.711;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3575,405,0 chrVI 190306 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.3048;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.78;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3082,330,0 chrVI 190339 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.4937;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.720;QD=22.66;ReadPosRankSum=1.687;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3512,370,0 chrVI 190534 . A T 2467 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.43;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2500,267,0 chrVI 190627 . G A 2031 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.16;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2064,222,0 chrVI 190798 . T C 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.915;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.000;QD=21.92;ReadPosRankSum=-0.588;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2357,247,0 chrVI 190849 . C T 2558 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.25;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2591,282,0 chrVI 191180 . C T 3686.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.2873;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.18;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3686,396,0 chrVI 191355 . A G 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.701;QD=21.67;ReadPosRankSum=1.701;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2460,273,0 chrVI 191409 . A T 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=3.146;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=-0.160;QD=21.44;ReadPosRankSum=1.599;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2820,300,0 chrVI 191439 . G A 2319 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=17.98;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2352,255,0 chrVI 191446 . T C 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=2.939;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;MQRankSum=-0.722;QD=16.96;ReadPosRankSum=2.409;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2085,240,0 chrVI 191655 . T C 3209 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;QD=21.98;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3242,363,0 chrVI 191830 . T C 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=187;Dels=0.00;FS=2.695;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;MQRankSum=1.675;QD=15.80;ReadPosRankSum=2.384;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:2988,336,0 chrVI 191847 . G T 3666.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.39;MQ0=0;QD=16.66;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:3666,393,0 chrVI 191857 . T A 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;MQRankSum=-0.891;QD=15.64;ReadPosRankSum=1.718;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:3800,414,0 chrVI 191860 . T C 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.393;DP=256;Dels=0.00;FS=2.371;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;MQRankSum=-2.175;QD=14.23;ReadPosRankSum=3.393;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:4,252:256:99:3643,414,0 chrVI 191885 . G A 5455.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=17.54;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,308:311:99:5455,589,0 chrVI 191914 . T C 5908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=3.5500;MLEAC=2;MLEAF=1.00;MQ=49.98;MQ0=0;MQRankSum=-0.246;QD=19.50;ReadPosRankSum=1.721;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:1,302:303:99:5908,654,0 chrVI 191945 . T C 5527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.963;DP=246;Dels=0.00;FS=2.567;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=2.302;QD=22.47;ReadPosRankSum=2.972;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:3,243:246:99:5527,633,0 chrVI 191977 . C T 5098.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.1859;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=25.49;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5098,549,0 chrVI 192288 . T C 5163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.669;QD=23.58;ReadPosRankSum=1.685;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:5163,573,0 chrVI 192497 . C T 4980.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=16.3800;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.84;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4980,534,0 chrVI 192534 . A G 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=163;Dels=0.00;FS=5.798;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-1.550;QD=21.01;ReadPosRankSum=2.945;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3424,384,0 chrVI 192551 . T A 2818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.663;DP=158;Dels=0.00;FS=10.902;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.586;QD=17.84;ReadPosRankSum=2.866;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:2851,309,0 chrVI 192564 . A G 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.316;DP=147;Dels=0.00;FS=18.670;HaplotypeScore=8.0428;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-2.242;QD=19.19;ReadPosRankSum=4.452;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:7,140:147:99:2854,321,0 chrVI 192732 . T C 3613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=157;Dels=0.00;FS=2.959;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-1.086;QD=23.01;ReadPosRankSum=2.386;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:3613,402,0 chrVI 192850 . A C 3651.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.23;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3651,414,0 chrVI 192937 . A G 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=164;Dels=0.00;FS=2.935;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=2.118;QD=21.96;ReadPosRankSum=2.419;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3602,405,0 chrVI 193023 . G A 4191.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.78;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4191,456,0 chrVI 193039 . G A 3798.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.58;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3798,420,0 chrVI 193175 . G A 3130 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=15.1064;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=19.69;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3163,363,0 chrVI 193303 . G A 3416.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=20.33;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3416,378,0 chrVI 193319 . A G 2696 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=17.62;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2729,321,0 chrVI 193344 . A G 1696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.686;DP=118;Dels=0.00;FS=7.505;HaplotypeScore=7.5096;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=0.236;QD=14.37;ReadPosRankSum=3.766;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:5,112:118:99:1729,195,0 chrVI 193346 . A C 1713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.0889;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;MQRankSum=0.278;QD=15.03;ReadPosRankSum=1.701;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,111:114:99:1746,195,0 chrVI 193410 . C T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.9361;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.75;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3457,363,0 chrVI 193560 . A G 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=163;Dels=0.00;FS=11.250;HaplotypeScore=9.9220;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.415;QD=23.21;ReadPosRankSum=2.389;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3783,423,0 chrVI 193711 . A G 4422.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.03;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4422,498,0 chrVI 193734 . T C 4441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.414;DP=191;Dels=0.00;FS=15.759;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.846;QD=23.25;ReadPosRankSum=3.378;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:4,187:191:99:4441,504,0 chrVI 193858 . T C 3702.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.71;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3702,417,0 chrVI 193872 . T A 3933.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.73;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3933,429,0 chrVI 194092 . A T 6989.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=24.35;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:6989,754,0 chrVI 194109 . A G 5651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=248;Dels=0.00;FS=4.307;HaplotypeScore=8.0958;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;MQRankSum=0.042;QD=22.79;ReadPosRankSum=1.662;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:5651,636,0 chrVI 194162 . A G 4036.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=2.9332;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=18.95;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4036,459,0 chrVI 194177 . A G 4291.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=19.96;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4291,486,0 chrVI 194182 . T C 4407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=222;Dels=0.00;FS=6.361;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=1.001;QD=19.85;ReadPosRankSum=2.427;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:4407,498,0 chrVI 194288 . C G 5446.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=13.2277;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=20.71;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,260:263:99:5446,612,0 chrVI 194310 . A G 4356.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=236;Dels=0.00;FS=2.574;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;MQRankSum=-0.774;QD=18.46;ReadPosRankSum=2.911;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:3,233:236:99:4356,489,0 chrVI 194319 . C T 4531.01 SnpCluster AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=19.12;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4531,483,0 chrVI 194320 . G C 4207.01 SnpCluster AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=17.75;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:4207,474,0 chrVI 194505 . T A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=22.88;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3259,351,0 chrVI 194593 . G T 2374 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.8338;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=18.40;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2407,261,0 chrVI 195150 . T A 4498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=200;Dels=0.00;FS=5.723;HaplotypeScore=19.8672;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.583;QD=22.49;ReadPosRankSum=1.356;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:4498,471,0 chrVI 195375 . T C 7122.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=11.3793;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=21.07;SB=-3.358e+03 GT:AD:DP:GQ:PL 1/1:0,337:338:99:7122,813,0 chrVI 195395 . G A 7241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=329;Dels=0.00;FS=3.214;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=1.171;QD=22.01;ReadPosRankSum=-1.033;SB=-4.104e+03 GT:AD:DP:GQ:PL 1/1:1,327:329:99:7241,775,0 chrVI 195471 . T C 7011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=307;Dels=0.00;FS=2.268;HaplotypeScore=17.6938;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.606;QD=22.84;ReadPosRankSum=1.493;SB=-3.442e+03 GT:AD:DP:GQ:PL 1/1:3,300:307:99:7011,792,0 chrVI 195505 . T C 7796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=334;Dels=0.00;FS=3.763;HaplotypeScore=13.3980;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.628;QD=23.34;ReadPosRankSum=1.701;SB=-3.500e+03 GT:AD:DP:GQ:PL 1/1:1,332:334:99:7796,867,0 chrVI 195636 . T A 6682.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=13.1764;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.65;SB=-3.596e+03 GT:AD:DP:GQ:PL 1/1:0,295:295:99:6682,738,0 chrVI 195711 . A G 6027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=262;Dels=0.00;FS=6.343;HaplotypeScore=12.9903;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.660;QD=23.00;ReadPosRankSum=2.374;SB=-3.241e+03 GT:AD:DP:GQ:PL 1/1:2,259:262:99:6027,672,0 chrVI 196194 . T C 3650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=-0.924;QD=22.39;ReadPosRankSum=1.711;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3650,411,0 chrVI 196491 . A T 2351 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.39;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2384,258,0 chrVI 196563 . C T 3685.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=25.59;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3685,393,0 chrVI 196604 . T G 2655 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=22.31;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2688,303,0 chrVI 196660 . T C 2068 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.2272;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.15;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2101,231,0 chrVI 196793 . G C 3342.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.4476;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=21.02;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3342,378,0 chrVI 196797 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=22.35;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3330,360,0 chrVI 196820 . C T 2475 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=17.55;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2508,273,0 chrVI 196830 . G A 2106 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2929;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=16.33;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,124:129:99:2139,231,0 chrVI 197325 . C A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3496,390,0 chrVI 197441 . G A 2748 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.8508;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.34;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2781,309,0 chrVI 197507 . T A 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=131;Dels=0.00;FS=2.952;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.817;QD=23.43;ReadPosRankSum=2.375;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3102,336,0 chrVI 198703 . T C 4229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.006;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=19.8861;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.034;QD=20.73;ReadPosRankSum=1.954;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4229,454,0 chrVI 199207 . G A 3028 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.26;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3061,333,0 chrVI 199246 . T C 2906 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.46;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2939,339,0 chrVI 199316 . C T 2444 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=21.82;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2477,264,0 chrVI 199448 . A T 1927 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=18.71;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1960,219,0 chrVI 199469 . C A 2153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.095;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6649;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=2.604;QD=19.05;ReadPosRankSum=0.782;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:6,106:113:99:2186,237,0 chrVI 199556 . G T 1468 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.17;MQ0=0;QD=14.39;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1501,165,0 chrVI 199559 . G A 1325 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.90;MQ0=0;QD=13.12;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1358,150,0 chrVI 199563 . C T 1348 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.52;MQ0=0;QD=13.35;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1381,153,0 chrVI 199576 . A C 1189 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.09;MQ0=0;QD=12.13;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1222,141,0 chrVI 199586 . G C 1450 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.45;MQ0=0;QD=14.95;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1483,168,0 chrVI 199793 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=22.77;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2492,270,0 chrVI 199828 . G C 2556 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.66;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2589,291,0 chrVI 200199 . G A 2033 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6212;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=20.13;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2066,219,0 chrVI 200200 . G A 2003 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6212;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=19.83;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2036,222,0 chrVI 200563 . G A 2491 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2524,273,0 chrVI 200644 . C T 2364 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2397,270,0 chrVI 200839 . C T 2261 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2294,249,0 chrVI 201185 . T C 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.1249;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.935;QD=24.94;ReadPosRankSum=1.707;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3492,387,0 chrVI 201458 . A G 3615.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3615,399,0 chrVI 201908 . A G 2011 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.66;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2044,237,0 chrVI 201948 . C T 2193 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=20.69;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2226,240,0 chrVI 201955 . A C 1862 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=16.93;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1895,216,0 chrVI 201959 . T C 1901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;MQRankSum=-0.015;QD=16.53;ReadPosRankSum=1.702;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1934,216,0 chrVI 202150 . G C 3756.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=15.8222;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=22.09;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3756,423,0 chrVI 202421 . A G 4815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=227;Dels=0.00;FS=3.999;HaplotypeScore=9.2751;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=0.935;QD=21.21;ReadPosRankSum=1.717;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4815,540,0 chrVI 202437 . G A 5104.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=11.5092;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=20.42;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,247:250:99:5104,564,0 chrVI 202686 . G A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.5840;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=19.27;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3565,390,0 chrVI 202731 . T A 4459.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.41;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4459,480,0 chrVI 202770 . C T 3957.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.5063;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.51;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3957,429,0 chrVI 202836 . C A 3570.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.03;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3570,387,0 chrVI 202885 . G A 3816.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=18.8280;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.19;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3816,432,0 chrVI 202970 . A G 3500.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.3126;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.58;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3500,393,0 chrVI 203623 . G A 2474 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=21.89;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2507,267,0 chrVI 203665 . A G 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=126;Dels=0.00;FS=9.182;HaplotypeScore=7.3302;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;MQRankSum=0.397;QD=20.43;ReadPosRankSum=3.347;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:4,122:126:99:2607,294,0 chrVI 203808 . G C 4651.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=18.5443;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.49;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4651,528,0 chrVI 203845 . A G 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=4.798;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.451;QD=25.00;ReadPosRankSum=1.667;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:4025,453,0 chrVI 204006 . G C 3531.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.11;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3531,405,0 chrVI 204061 . T C 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=185;Dels=0.00;FS=3.457;HaplotypeScore=16.1373;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.847;QD=19.05;ReadPosRankSum=1.713;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:3524,396,0 chrVI 204274 . G A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.90;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4077,430,0 chrVI 204282 . G C 3931.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.9656;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.60;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3931,441,0 chrVI 204345 . G C 5041.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.6359;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.45;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,232:235:99:5041,579,0 chrVI 204676 . T C 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=190;Dels=0.00;FS=7.499;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-0.500;QD=21.60;ReadPosRankSum=2.411;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4104,462,0 chrVI 204767 . A G 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=165;Dels=0.00;FS=2.554;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-1.055;QD=18.68;ReadPosRankSum=2.909;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3116,351,0 chrVI 204770 . G C 3146 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.84;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3179,357,0 chrVI 204826 . A G 3415.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;QD=19.51;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3415,381,0 chrVI 204894 . G T 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.718;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=91.1457;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;MQRankSum=-1.648;QD=17.95;ReadPosRankSum=1.676;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2277,249,0 chrVI 204918 . T A 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=121;Dels=0.00;FS=2.785;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;MQRankSum=-1.588;QD=13.98;ReadPosRankSum=2.408;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:1724,186,0 chrVI 205045 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=25.51;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3196,348,0 chrVI 205105 . G C 2790 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=22.14;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2823,315,0 chrVI 205293 . C T 3142 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.5702;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.10;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3175,342,0 chrVI 205974 . C T 3374.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3374,378,0 chrVI 207745 . C G 4476.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=16.2870;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.16;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,217:222:99:4476,513,0 chrVI 208668 . T C 3853.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.7464;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.76;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3853,441,0 chrVI 209238 . A C 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=162;Dels=0.00;FS=5.792;HaplotypeScore=12.4213;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.519;QD=20.93;ReadPosRankSum=2.944;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:3391,375,0 chrVI 209679 . G A 4733.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.40;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4733,510,0 chrVI 210003 . T C 2037 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.79;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2070,237,0 chrVI 210359 . T A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.479;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.555;QD=1.00;ReadPosRankSum=-2.589;SB=1.24 GT:AD:DP:GQ:PL 1/1:3,9:12:6:43,6,0 chrVI 210496 . C A 2487 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.2322;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;QD=17.89;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2520,282,0 chrVI 210664 . G A 2495 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=24.95;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2528,267,0 chrVI 210719 . G A 2324 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=21.13;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2357,261,0 chrVI 210741 . T A 2411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=3.551;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=1.264;QD=21.72;ReadPosRankSum=1.202;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2444,273,0 chrVI 211652 . T C 5945.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=19.8216;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.64;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,287:288:99:5945,663,0 chrVI 211965 . C G 4209.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4209,480,0 chrVI 212106 . T C 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=186;Dels=0.00;FS=5.619;HaplotypeScore=10.4053;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-0.378;QD=16.78;ReadPosRankSum=2.897;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:3155,354,0 chrVI 212115 . A T 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=187;Dels=0.00;FS=4.085;HaplotypeScore=7.3658;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=1.602;QD=18.48;ReadPosRankSum=1.658;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3455,372,0 chrVI 212520 . A G 6546.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=19.7403;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.46;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,277:279:99:6546,735,0 chrVI 212583 . G A 8230.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=12.5388;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.79;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,343:346:99:8230,915,0 chrVI 212940 . A G 4651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=13.1964;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.253;QD=20.58;ReadPosRankSum=1.717;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,223:226:99:4651,525,0 chrVI 213181 . G A 3998.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=19.1263;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.59;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3998,426,0 chrVI 213216 . A G 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.961;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=17.1590;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=2.357;QD=21.91;ReadPosRankSum=2.278;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:2,184:190:99:4162,462,0 chrVI 213465 . C T 3829.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.8748;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.64;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3829,408,0 chrVI 213776 . T C 4760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=222;Dels=0.00;FS=6.011;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.575;QD=21.44;ReadPosRankSum=2.941;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:3,217:222:99:4760,543,0 chrVI 214462 . A G 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=179;Dels=0.00;FS=7.149;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.617;QD=22.01;ReadPosRankSum=2.380;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:2,175:179:99:3939,438,0 chrVI 214532 . G A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.19;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3306,360,0 chrVI 214589 . A G 3696.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.1941;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.13;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3696,414,0 chrVI 214720 . C T 3590.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=15.0815;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.30;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3590,399,0 chrVI 214843 . C T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.0155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3402,372,0 chrVI 215006 . A G 2941 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4556;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.42;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2974,336,0 chrVI 215378 . C G 3171 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.15;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3204,366,0 chrVI 215586 . T A 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.586;QD=23.71;ReadPosRankSum=1.706;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3186,345,0 chrVI 215801 . T C 3972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=175;Dels=0.00;FS=2.984;HaplotypeScore=13.3771;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.060;QD=22.70;ReadPosRankSum=2.407;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3972,453,0 chrVI 216017 . A G 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=197;Dels=0.00;FS=2.664;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.157;QD=22.14;ReadPosRankSum=2.337;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:4362,495,0 chrVI 216152 . C T 3869.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3869,426,0 chrVI 216508 . C T 1623 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=19.32;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1656,180,0 chrVI 216513 . G A 1687 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;QD=19.39;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1720,183,0 chrVI 216519 . C A 1409 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=15.66;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1442,159,0 chrVI 216530 . C A 1358 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=15.79;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1391,150,0 chrVI 216563 . C T 1413 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;QD=16.24;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1446,159,0 chrVI 216585 . A T 1805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=101;Dels=0.00;FS=7.256;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=-1.664;QD=17.87;ReadPosRankSum=1.664;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1838,201,0 chrVI 216633 . C A 2904 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.69;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2937,324,0 chrVI 216972 . T A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.78;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3281,354,0 chrVI 217173 . G A 3449.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.30;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3449,381,0 chrVI 217258 . C G 2786 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=22.65;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2819,318,0 chrVI 217299 . C T 2810 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.22;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2843,309,0 chrVI 217312 . A C 3012 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.21;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3045,339,0 chrVI 217387 . C T 3029 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=18.1009;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.33;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3062,333,0 chrVI 217578 . A T 2886 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=25.10;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2919,315,0 chrVI 218127 . G A 3108 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.5540;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.73;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3141,336,0 chrVI 218244 . C T 2623 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.23;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2656,288,0 chrVI 218274 . T C 3066 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.38;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3099,348,0 chrVI 218594 . T C 3196 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.51;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3229,357,0 chrVI 218607 . T A 2819 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.28;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2852,315,0 chrVI 218781 . C T 3820.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.5457;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.33;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3820,408,0 chrVI 219393 . T A 3092 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.42;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3125,342,0 chrVI 219786 . G A 4128.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.8378;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4128,450,0 chrVI 220148 . C T 5804.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=14.8662;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=24.28;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:0,234:239:99:5804,616,0 chrVI 220253 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.01;FS=0.000;HaplotypeScore=10.9488;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=19.98;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3877,414,0 chrVI 220309 . G A 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.851;DP=169;Dels=0.00;FS=7.965;HaplotypeScore=124.8776;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=0.605;QD=20.62;ReadPosRankSum=1.650;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3485,381,0 chrVI 221044 . A G 6323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.191;DP=290;Dels=0.00;FS=6.769;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.331;QD=21.80;ReadPosRankSum=2.398;SB=-3.040e+03 GT:AD:DP:GQ:PL 1/1:2,283:290:99:6323,711,0 chrVI 221384 . A T 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=4.030;HaplotypeScore=12.9760;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.363;QD=23.39;ReadPosRankSum=1.692;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4046,435,0 chrVI 221492 . A T 5163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=231;Dels=0.00;FS=9.971;HaplotypeScore=20.7830;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.091;QD=22.35;ReadPosRankSum=2.267;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:5163,551,0 chrVI 221528 . C G 6278.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=17.0799;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.25;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,266:270:99:6278,708,0 chrVI 221849 . G A 3669.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=43.88;MQ0=0;QD=21.21;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3669,399,0 chrVI 221860 . T G 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=165;Dels=0.00;FS=6.332;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=0;MQRankSum=0.163;QD=18.98;ReadPosRankSum=1.710;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,158:165:99:3164,357,0 chrVI 221877 . A G 2226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=134;Dels=0.01;FS=2.555;HaplotypeScore=3.8165;MLEAC=2;MLEAF=1.00;MQ=40.04;MQ0=0;MQRankSum=-2.084;QD=16.61;ReadPosRankSum=2.947;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2259,255,0 chrVI 221898 . C T 2124 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;QD=16.47;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2157,240,0 chrVI 221904 . G A 2101 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.4328;MLEAC=2;MLEAF=1.00;MQ=41.30;MQ0=0;QD=15.68;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2134,231,0 chrVI 222095 . T C 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.336;DP=186;Dels=0.00;FS=2.365;HaplotypeScore=15.1976;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=0.755;QD=23.52;ReadPosRankSum=3.403;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:4,180:186:99:4374,492,0 chrVI 222306 . A G 5010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=225;Dels=0.00;FS=2.925;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-0.082;QD=22.27;ReadPosRankSum=2.428;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5010,558,0 chrVI 222369 . G A 4524.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=8.6423;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=19.67;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4524,501,0 chrVI 222373 . C G 4149.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.8273;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=19.30;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4149,474,0 chrVI 222408 . G T 2739 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5084;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=16.80;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2772,300,0 chrVI 222435 . A G 1817 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;QD=12.80;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1850,207,0 chrVI 222453 . C A 1994 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=13.66;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2027,222,0 chrVI 222456 . C T 2020 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;QD=14.23;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2053,222,0 chrVI 222477 . T C 2678 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.1150;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=16.13;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2711,300,0 chrVI 222543 . G A 4709.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.2893;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.08;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4709,513,0 chrVI 222612 . T A 4455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=197;Dels=0.00;FS=2.978;HaplotypeScore=13.9034;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.119;QD=22.61;ReadPosRankSum=2.387;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4455,495,0 chrVI 222725 . T C 7660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.352;DP=322;Dels=0.00;FS=5.070;HaplotypeScore=34.2215;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-1.354;QD=23.79;ReadPosRankSum=3.418;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:4,314:322:99:7660,858,0 chrVI 222866 . G C 6664.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.14;SB=-3.805e+03 GT:AD:DP:GQ:PL 1/1:0,300:301:99:6664,747,0 chrVI 222940 . T C 5249.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=12.7492;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.27;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:5249,588,0 chrVI 223291 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=25.27;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3192,360,0 chrVI 223531 . C T 4310.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.23;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4310,480,0 chrVI 223558 . T G 4000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=3.847;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.821;QD=20.41;ReadPosRankSum=1.661;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:4000,456,0 chrVI 223580 . G A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.49;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3494,381,0 chrVI 223620 . C T 2583 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.8997;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=18.72;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2616,285,0 chrVI 223985 . C A 1075 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=38.9304;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.06;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1108,120,0 chrVI 224053 . A G 1308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.0208;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.671;QD=21.10;ReadPosRankSum=1.676;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1341,150,0 chrVI 224085 . T C 1744 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=11.6124;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=23.89;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1777,198,0 chrVI 224143 . T C 837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;MQRankSum=0.000;QD=23.25;ReadPosRankSum=-0.481;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,35:36:77:870,77,0 chrVI 224426 . G A 5859.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=25.47;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5859,642,0 chrVI 224590 . A T 5879.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=348;Dels=0.00;FS=3.812;HaplotypeScore=8.5107;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=0.443;QD=16.89;ReadPosRankSum=1.712;SB=-3.666e+03 GT:AD:DP:GQ:PL 1/1:1,347:348:99:5879,637,0 chrVI 224593 . A G 5055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=331;Dels=0.00;FS=2.403;HaplotypeScore=4.7118;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=0.790;QD=15.27;ReadPosRankSum=1.362;SB=-3.463e+03 GT:AD:DP:GQ:PL 1/1:3,327:330:99:5055,568,0 chrVI 224612 . T C 4175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=341;Dels=0.00;FS=3.018;HaplotypeScore=13.3602;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-0.693;QD=12.24;ReadPosRankSum=2.312;SB=-4.255e+03 GT:AD:DP:GQ:PL 1/1:2,337:341:99:4175,477,0 chrVI 224816 . T A 6736.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.01;FS=0.000;HaplotypeScore=22.2275;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.12;SB=-3.049e+03 GT:AD:DP:GQ:PL 1/1:0,317:317:99:6736,727,0 chrVI 225030 . A C 7768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=352;Dels=0.00;FS=9.202;HaplotypeScore=20.0558;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=0.157;QD=22.07;ReadPosRankSum=2.429;SB=-3.194e+03 GT:AD:DP:GQ:PL 1/1:2,349:352:99:7768,873,0 chrVI 225259 . A C 6736.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.723;DP=380;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.247;QD=17.73;ReadPosRankSum=1.714;SB=-4.511e+03 GT:AD:DP:GQ:PL 1/1:1,378:380:99:6736,753,0 chrVI 225264 . C G 6264.01 filter AC=2;AF=1.00;AN=2;DP=374;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=16.75;SB=-4.481e+03 GT:AD:DP:GQ:PL 1/1:0,371:374:99:6264,702,0 chrVI 225483 . C T 5494.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=31.8332;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=20.50;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:0,266:268:99:5494,600,0 chrVI 225547 . T C 7408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=327;Dels=0.00;FS=5.552;HaplotypeScore=27.3273;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.978;QD=22.65;ReadPosRankSum=1.584;SB=-3.239e+03 GT:AD:DP:GQ:PL 1/1:3,319:327:99:7408,823,0 chrVI 226036 . G C 5522.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=22.7583;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.86;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:0,273:278:99:5522,630,0 chrVI 226217 . G A 6748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.171;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=21.3881;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.374;QD=24.19;ReadPosRankSum=-1.483;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:1,277:279:99:6748,716,0 chrVI 226791 . G A 1867 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=21.46;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1900,204,0 chrVI 226794 . G A 1903 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=21.38;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1936,216,0 chrVI 226804 . C A 1932 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=21.00;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1965,210,0 chrVI 226881 . A T 3916.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.17;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3916,420,0 chrVI 226930 . A G 4182.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.333;DP=197;Dels=0.02;FS=20.019;HaplotypeScore=10.5609;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.990;QD=21.23;ReadPosRankSum=3.406;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:4,189:193:99:4182,480,0 chrVI 227693 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.54;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2873,309,0 chrVI 228093 . C T 4560.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=18.2611;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.92;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:4560,498,0 chrVI 228845 . T C 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=3.750;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.021;QD=21.04;ReadPosRankSum=1.690;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3513,399,0 chrVI 229320 . G A 4709.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=18.9516;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.42;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4709,507,0 chrVI 229517 . T C 4143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=219;Dels=0.00;FS=3.030;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=0.277;QD=18.92;ReadPosRankSum=1.716;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4143,462,0 chrVI 229520 . A G 3972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=-1.669;QD=18.22;ReadPosRankSum=1.684;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:3972,459,0 chrVI 229838 . T A 4256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=4.042;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.534;QD=24.32;ReadPosRankSum=1.712;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4256,454,0 chrVI 230333 . T C 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=4.978;HaplotypeScore=9.6978;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.067;QD=21.14;ReadPosRankSum=1.705;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2781,315,0 chrVI 231775 . A G 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=140;Dels=0.00;FS=3.074;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.180;QD=22.30;ReadPosRankSum=1.707;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:3155,351,0 chrVI 232392 . G T 3370.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.06;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3370,372,0 chrVI 233791 . A C 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=0.458;QD=20.41;ReadPosRankSum=1.699;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2196,246,0 chrVI 233804 . A G 2286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-1.702;QD=19.71;ReadPosRankSum=1.702;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2319,261,0 chrVI 233830 . T C 2183 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.2679;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=19.32;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2216,246,0 chrVI 234009 . A C 2421 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=24.21;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2454,276,0 chrVI 234085 . G C 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.513;DP=110;Dels=0.00;FS=3.345;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.545;QD=20.82;ReadPosRankSum=-1.668;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2323,243,0 chrVI 234160 . G A 2871 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.7121;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.97;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2904,321,0 chrVI 234292 . G A 3804.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.0584;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3804,414,0 chrVI 235342 . A G 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=3.053;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.463;QD=22.72;ReadPosRankSum=1.665;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2396,270,0 chrVI 235420 . T C 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.232;QD=22.78;ReadPosRankSum=1.650;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2926,330,0 chrVI 235446 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.52;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3458,372,0 chrVI 235489 . C T 3902.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=25.34;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3902,423,0 chrVI 236954 . G A 3679.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.1435;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.30;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3679,405,0 chrVI 238621 . A G 4327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=201;Dels=0.00;FS=5.991;HaplotypeScore=15.5244;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.803;QD=21.53;ReadPosRankSum=2.945;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:3,196:201:99:4327,489,0 chrVI 238707 . A G 4158.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=177;Dels=0.00;FS=7.376;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.534;QD=23.49;ReadPosRankSum=2.311;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4158,462,0 chrVI 239478 . G A 3758.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.06;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3758,402,0 chrVI 239639 . C G 2355 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.54;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2388,267,0 chrVI 239696 . A G 2685 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.0259;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.19;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2718,303,0 chrVI 239828 . G T 1810 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=25.49;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1843,198,0 chrVI 239854 . T C 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=4.281;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.267;QD=23.13;ReadPosRankSum=1.681;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1606,183,0 chrVI 239891 . G T 2108 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=12.1012;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.29;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2141,237,0 chrVI 239986 . G A 3204 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3237,351,0 chrVI 241183 . C T 5440.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=14.8176;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.65;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5440,594,0 chrVI 241977 . G A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.5742;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=25.73;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3294,351,0 chrVI 242045 . G T 2672 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.27;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2705,288,0 chrVI 243032 . A G 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.577;QD=19.91;ReadPosRankSum=1.614;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2363,270,0 chrVI 243163 . T C 2637 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.27;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2670,306,0 chrVI 243423 . C T 5199.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=15.1683;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.85;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5199,570,0 chrVI 243783 . C T 5961.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=11.5930;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.41;SB=-3.448e+03 GT:AD:DP:GQ:PL 1/1:0,262:266:99:5961,631,0 chrVI 243805 . T G 5116.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=22.34;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5116,576,0 chrVI 243833 . C T 3716.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.0392;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=20.31;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3716,405,0 chrVI 243850 . C G 3088 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=18.60;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3121,351,0 chrVI 244123 . T C 2713 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.1175;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.80;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2746,309,0 chrVI 244267 . G C 2456 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=17.80;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,134:138:99:2489,291,0 chrVI 244268 . C A 2625 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.30;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2658,288,0 chrVI 244420 . C T 3533.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.67;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3533,375,0 chrVI 244444 . A T 3838.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.68;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3838,417,0 chrVI 244843 . G A 4120.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=20.6634;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4120,444,0 chrVI 244891 . T C 4069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.191;DP=191;Dels=0.00;FS=3.021;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.304;QD=21.30;ReadPosRankSum=2.424;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4069,459,0 chrVI 245376 . C T 2679 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=18.73;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:2712,297,0 chrVI 245396 . T C 2501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.83;MQ0=0;MQRankSum=0.623;QD=16.90;ReadPosRankSum=2.416;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2534,279,0 chrVI 245404 . G A 2727 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;QD=17.59;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2760,294,0 chrVI 245419 . C T 2500 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.18;MQ0=0;QD=16.23;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2533,282,0 chrVI 245429 . T C 2307 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.13;MQ0=0;QD=14.69;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2340,264,0 chrVI 245438 . T C 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=168;Dels=0.00;FS=6.052;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=0;MQRankSum=-2.455;QD=15.39;ReadPosRankSum=2.934;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:2618,291,0 chrVI 245484 . T G 2869 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=19.39;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2902,324,0 chrVI 245505 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=19.83;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2968,321,0 chrVI 245636 . G A 3759.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=22.64;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3759,408,0 chrVI 245661 . G A 3315.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=21.81;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3315,357,0 chrVI 245864 . C T 2553 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.2942;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.59;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2586,279,0 chrVI 245900 . T C 1710 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.66;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1743,201,0 chrVI 245910 . G A 1706 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.06;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1739,189,0 chrVI 245962 . T A 957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.860;DP=67;Dels=0.03;FS=6.148;HaplotypeScore=14.4080;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=2.110;QD=14.28;ReadPosRankSum=0.641;SB=-7.549e+02 GT:AD:DP:GQ:PL 1/1:3,62:65:92:990,92,0 chrVI 246000 . C T 2115 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=17.0449;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.95;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2148,240,0 chrVI 246034 . A T 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=5.033;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-1.378;QD=23.78;ReadPosRankSum=1.656;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3281,357,0 chrVI 246259 . A C 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.6927;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-0.036;QD=20.13;ReadPosRankSum=1.714;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:3865,429,0 chrVI 246293 . G A 3978.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.40;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:3978,432,0 chrVI 246301 . T C 3734.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=17.87;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:3734,423,0 chrVI 246335 . G T 4908.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.37;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:4908,523,0 chrVI 246533 . C T 3833.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.6707;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.90;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3833,414,0 chrVI 246625 . G A 4646.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.23;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4646,501,0 chrVI 246733 . T G 3619.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=17.4107;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3619,408,0 chrVI 246893 . A G 2974 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.4920;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=22.88;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3007,333,0 chrVI 247017 . G A 3184 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4604;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.27;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3217,345,0 chrVI 247084 . T C 2831 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.20;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2864,315,0 chrVI 247274 . A G 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=4.337;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-0.768;QD=19.56;ReadPosRankSum=1.680;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2635,297,0 chrVI 247277 . G C 2595 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=19.81;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2628,297,0 chrVI 247300 . T C 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.391;QD=17.81;ReadPosRankSum=1.704;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2241,252,0 chrVI 247354 . G A 2054 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=18.02;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2087,225,0 chrVI 247549 . A G 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=3.726;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.039;QD=23.22;ReadPosRankSum=1.704;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2935,324,0 chrVI 247588 . A G 2181 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.59;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2214,243,0 chrVI 247915 . A G 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=3.129;HaplotypeScore=8.6130;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.866;QD=21.00;ReadPosRankSum=1.685;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3162,363,0 chrVI 248365 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.33;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3406,381,0 chrVI 248493 . A T 4121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.253;DP=179;Dels=0.00;FS=4.943;HaplotypeScore=13.8781;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=2.066;QD=23.02;ReadPosRankSum=2.939;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:4,174:179:99:4121,450,0 chrVI 248645 . C T 4679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.7836;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=1.714;QD=24.12;ReadPosRankSum=0.565;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4679,510,0 chrVI 248756 . G A 4613.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=24.03;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4613,501,0 chrVI 248790 . C G 4361.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=22.60;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4361,480,0 chrVI 248810 . C T 3565.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.22;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3565,399,0 chrVI 248816 . C T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.63;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3342,363,0 chrVI 248849 . T C 3347.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.18;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3347,375,0 chrVI 249354 . C T 4972.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.25;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4972,546,0 chrVI 249566 . T C 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=198;Dels=0.00;FS=3.914;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.484;QD=21.01;ReadPosRankSum=1.714;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4160,465,0 chrVI 249791 . C G 4064.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.6402;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.70;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4064,450,0 chrVI 249889 . T G 3002 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.1636;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.15;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3035,345,0 chrVI 249999 . C T 2330 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=17.01;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2363,261,0 chrVI 250073 . T C 2481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=3.105;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=0.312;QD=17.85;ReadPosRankSum=1.707;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2514,282,0 chrVI 250283 . T C 3768.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=22.70;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3768,420,0 chrVI 250303 . G C 3738.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=20.21;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3738,426,0 chrVI 250952 . A G 4650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=212;Dels=0.00;FS=10.009;HaplotypeScore=6.7153;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.343;QD=21.93;ReadPosRankSum=2.403;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:2,209:212:99:4650,540,0 chrVI 250973 . A T 4702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=212;Dels=0.00;FS=4.918;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.371;QD=22.18;ReadPosRankSum=1.683;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4702,519,0 chrVI 251006 . C G 4793.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=18.5719;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.21;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,220:226:99:4793,534,0 chrVI 251165 . A G 5622.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.2461;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.58;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5622,639,0 chrVI 251609 . G A 4870.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.8322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4870,522,0 chrVI 251816 . T C 4144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=3.601;HaplotypeScore=8.0364;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.617;QD=22.64;ReadPosRankSum=1.713;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:4144,459,0 chrVI 252169 . G C 2283 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=20.20;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2316,261,0 chrVI 252203 . A G 2440 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.18;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2473,279,0 chrVI 252230 . C T 2184 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.60;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2217,246,0 chrVI 252281 . A G 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=-0.773;QD=19.21;ReadPosRankSum=1.705;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2530,282,0 chrVI 252300 . C T 2229 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=101.1527;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=17.98;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2262,243,0 chrVI 252323 . C T 1977 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=16.61;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2010,213,0 chrVI 252348 . C T 1635 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=14.86;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1668,183,0 chrVI 252383 . G T 2369 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.25;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2402,264,0 chrVI 252493 . G T 3819.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=24.32;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3819,417,0 chrVI 252549 . T C 4203.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.231;DP=187;Dels=0.00;FS=5.248;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-0.997;QD=22.48;ReadPosRankSum=3.412;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:4,179:187:99:4203,480,0 chrVI 252657 . T C 4261.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.41;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4261,477,0 chrVI 253095 . C T 3641.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3641,390,0 chrVI 253134 . T C 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=3.431;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.066;QD=21.93;ReadPosRankSum=1.705;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2906,324,0 chrVI 253197 . G A 2908 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.85;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2941,318,0 chrVI 253476 . G A 1278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.402;DP=65;Dels=0.00;FS=3.080;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.622;QD=19.66;ReadPosRankSum=1.512;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1311,141,0 chrVI 253673 . T G 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.200;QD=21.56;ReadPosRankSum=2.855;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:3,143:147:99:3202,369,0 chrVI 253709 . T G 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.162;QD=19.51;ReadPosRankSum=1.657;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2764,321,0 chrVI 253927 . G A 4706.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=19.1870;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.89;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4706,510,0 chrVI 254049 . C G 5435.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.63;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5435,606,0 chrVI 254081 . C T 4610.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.4009;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.89;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4610,498,0 chrVI 254393 . T G 4399.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=18.41;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:4399,492,0 chrVI 254401 . T C 4521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=243;Dels=0.00;FS=3.346;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;MQRankSum=0.072;QD=18.60;ReadPosRankSum=1.718;SB=-2.946e+03 GT:AD:DP:GQ:PL 1/1:1,241:243:99:4521,504,0 chrVI 254411 . A G 4103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;MQRankSum=0.101;QD=17.10;ReadPosRankSum=1.703;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:1,239:240:99:4103,471,0 chrVI 254423 . A G 3934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.397;DP=247;Dels=0.00;FS=8.678;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=1.056;QD=15.93;ReadPosRankSum=3.404;SB=-2.723e+03 GT:AD:DP:GQ:PL 1/1:4,241:247:99:3934,444,0 chrVI 254453 . T C 3973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=249;Dels=0.00;FS=3.134;HaplotypeScore=13.4520;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;MQRankSum=-1.523;QD=15.96;ReadPosRankSum=1.635;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:3973,441,0 chrVI 254504 . A G 6017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=282;Dels=0.00;FS=6.065;HaplotypeScore=18.1747;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=-0.221;QD=21.34;ReadPosRankSum=2.968;SB=-3.410e+03 GT:AD:DP:GQ:PL 1/1:3,279:282:99:6017,687,0 chrVI 254752 . T C 4684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=233;Dels=0.00;FS=3.630;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=0.335;QD=20.10;ReadPosRankSum=1.717;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:4684,525,0 chrVI 254764 . A G 4233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=223;Dels=0.00;FS=5.612;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=0.851;QD=18.98;ReadPosRankSum=2.933;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:3,220:223:99:4233,471,0 chrVI 254774 . T C 3966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=222;Dels=0.00;FS=7.585;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=-1.863;QD=17.86;ReadPosRankSum=2.405;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:3966,447,0 chrVI 254882 . C T 5005.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.3179;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.95;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5005,558,0 chrVI 254963 . C T 3713.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.71;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3713,399,0 chrVI 255149 . C T 2849 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.3613;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.64;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2882,312,0 chrVI 255164 . G A 2582 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.86;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2615,285,0 chrVI 255240 . T C 2181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=3.826;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=-0.203;QD=19.65;ReadPosRankSum=1.701;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2214,249,0 chrVI 255242 . C T 2359 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.69;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2392,261,0 chrVI 255371 . C T 1710 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.6128;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=18.00;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1743,186,0 chrVI 255417 . C T 1746 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=17.46;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1779,198,0 chrVI 255420 . T C 1710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.157;DP=103;Dels=0.00;FS=3.043;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;MQRankSum=-0.938;QD=16.60;ReadPosRankSum=2.401;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:2,99:103:99:1743,195,0 chrVI 255483 . C T 2342 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=21.29;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2375,252,0 chrVI 255870 . C T 2971 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.55;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:3004,324,0 chrVI 255905 . A T 2515 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.26;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2548,273,0 chrVI 255981 . G C 2304 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.20;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2337,261,0 chrVI 255999 . A G 2136 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=16.31;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2169,249,0 chrVI 256052 . C T 2566 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.02;FS=0.000;HaplotypeScore=15.0270;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=16.14;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2599,282,0 chrVI 256212 . C T 3327.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.2409;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=22.48;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3327,360,0 chrVI 256262 . T G 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=147;Dels=0.00;FS=3.289;HaplotypeScore=17.4842;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.609;QD=20.49;ReadPosRankSum=1.708;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3045,345,0 chrVI 256338 . A T 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=152;Dels=0.00;FS=3.001;HaplotypeScore=119.7466;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-0.926;QD=18.73;ReadPosRankSum=2.335;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2880,306,0 chrVI 256430 . A G 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=170;Dels=0.00;FS=8.185;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-1.014;QD=20.29;ReadPosRankSum=2.420;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:2,164:170:99:3449,399,0 chrVI 256435 . T C 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;MQRankSum=0.668;QD=20.52;ReadPosRankSum=1.690;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3448,393,0 chrVI 256599 . T A 3057 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.16;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3090,345,0 chrVI 256744 . A G 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=149;Dels=0.00;FS=3.603;HaplotypeScore=8.8137;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.500;QD=22.41;ReadPosRankSum=1.686;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3339,372,0 chrVI 257074 . A G 2393 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.4832;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=18.84;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2426,279,0 chrVI 257077 . C A 2509 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.1252;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.72;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2542,282,0 chrVI 257096 . T C 2539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.2657;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.848;QD=17.51;ReadPosRankSum=1.708;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2572,294,0 chrVI 257160 . G C 2754 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=18.12;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:2787,318,0 chrVI 257172 . G A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.12;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3358,372,0 chrVI 257253 . G A 4623.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.7293;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.72;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4623,498,0 chrVI 257303 . A T 4529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.4962;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-1.309;QD=25.16;ReadPosRankSum=1.694;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4529,492,0 chrVI 257344 . G A 4427.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.9723;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.19;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4427,477,0 chrVI 257425 . C A 5085.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.80;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5085,549,0 chrVI 257686 . C T 4292.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.71;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4292,465,0 chrVI 257833 . A G 3518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=-0.752;QD=21.99;ReadPosRankSum=1.667;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3518,399,0 chrVI 257852 . G A 3521.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=22.72;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3521,387,0 chrVI 257882 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.4728;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=0.329;QD=21.85;ReadPosRankSum=1.666;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3496,396,0 chrVI 257913 . C T 3834.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.38;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3834,411,0 chrVI 258075 . C T 1931 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;QD=13.60;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1964,213,0 chrVI 258087 . G A 1954 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.10;MQ0=0;QD=12.94;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:1987,219,0 chrVI 258094 . C T 1831 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;QD=12.37;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1864,213,0 chrVI 258145 . C T 3032 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=19.07;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3065,348,0 chrVI 258210 . G A 3901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.9936;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;MQRankSum=0.557;QD=23.08;ReadPosRankSum=0.701;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3901,417,0 chrVI 258414 . A G 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.707;DP=168;Dels=0.00;FS=6.082;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-0.299;QD=18.79;ReadPosRankSum=2.934;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:3190,357,0 chrVI 258423 . C T 3313.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.20;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3313,360,0 chrVI 258520 . C T 3428.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=23.32;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3428,378,0 chrVI 258551 . C A 3791.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=24.15;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3791,411,0 chrVI 258613 . A C 4178.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.46;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4178,471,0 chrVI 258651 . T C 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=183;Dels=0.00;FS=6.092;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-2.369;QD=22.13;ReadPosRankSum=2.382;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4049,465,0 chrVI 258878 . G A 4883.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.2289;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.29;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4883,528,0 chrVI 258983 . C T 5512.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=18.2099;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=23.76;SB=-2.937e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5512,600,0 chrVI 259027 . G A 4984.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.80;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4984,537,0 chrVI 259091 . G A 4290.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=15.6935;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.57;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4290,454,0 chrVI 259181 . A C 4562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=209;Dels=0.00;FS=2.872;HaplotypeScore=10.6137;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.289;QD=21.83;ReadPosRankSum=2.426;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:2,206:209:99:4562,525,0 chrVI 259296 . G A 4898.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.9782;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.21;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:4898,534,0 chrVI 259497 . G A 5291.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=16.7111;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.00;SB=-2.886e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5291,591,0 chrVI 259916 . T G 2628 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=41.94;MQ0=0;QD=19.32;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2661,306,0 chrVI 259924 . T C 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.529;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;MQRankSum=-0.756;QD=19.11;ReadPosRankSum=1.683;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2747,309,0 chrVI 259943 . A G 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.780;DP=134;Dels=0.00;FS=11.268;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;MQRankSum=-2.782;QD=17.52;ReadPosRankSum=3.780;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:5,129:134:99:2381,273,0 chrVI 259953 . T A 2225 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=68.5190;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=0;QD=18.39;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2258,243,0 chrVI 260009 . G A 2245 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0721;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.03;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2278,246,0 chrVI 260044 . T G 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=-0.166;QD=20.71;ReadPosRankSum=2.649;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:3,143:147:99:3077,345,0 chrVI 260087 . G A 2833 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.83;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2866,324,0 chrVI 260191 . C T 3521.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=24.62;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3521,378,0 chrVI 260374 . C A 3464.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.02;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.14;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3464,372,0 chrVI 260396 . T C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=166;Dels=0.00;FS=3.021;HaplotypeScore=3.5017;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=0.781;QD=19.37;ReadPosRankSum=2.404;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:2,160:166:99:3248,357,0 chrVI 260870 . A G 2085 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.67;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,102:106:99:2118,234,0 chrVI 260883 . C T 2144 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.23;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2177,234,0 chrVI 261100 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.9382;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.52;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3185,351,0 chrVI 261434 . G A 2897 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.62;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2930,324,0 chrVI 261556 . A T 1881 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1026;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=17.42;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1914,207,0 chrVI 261559 . T C 1738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.098;DP=108;Dels=0.00;FS=7.034;HaplotypeScore=3.1026;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.410;QD=16.09;ReadPosRankSum=1.981;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:2,103:108:99:1771,201,0 chrVI 261777 . T C 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=126;Dels=0.00;FS=2.956;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=0.303;QD=22.01;ReadPosRankSum=2.352;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2806,312,0 chrVI 261817 . C T 3215 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.99;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3248,348,0 chrVI 261932 . C T 3596.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.66;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3596,378,0 chrVI 262211 . T C 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.127;DP=122;Dels=0.00;FS=6.349;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=-1.139;QD=17.59;ReadPosRankSum=1.845;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2179,243,0 chrVI 262264 . T C 678 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=69.2876;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=6.52;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:84:711,84,0 chrVI 262281 . G A 953 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5584;MLEAC=2;MLEAF=1.00;MQ=33.46;MQ0=0;QD=8.74;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:986,108,0 chrVI 262284 . A G 873 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5584;MLEAC=2;MLEAF=1.00;MQ=34.87;MQ0=0;QD=8.48;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:906,102,0 chrVI 262295 . T A 1138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=105;Dels=0.00;FS=3.038;HaplotypeScore=4.4603;MLEAC=2;MLEAF=1.00;MQ=39.04;MQ0=0;MQRankSum=-1.834;QD=10.84;ReadPosRankSum=2.237;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:1171,126,0 chrVI 262306 . A G 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=3.207;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;MQRankSum=-0.506;QD=12.67;ReadPosRankSum=1.701;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:1477,165,0 chrVI 262408 . C T 3321.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=24.42;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3321,366,0 chrVI 262598 . C G 3184 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7132;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.24;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3217,357,0 chrVI 262752 . C G 3550.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3550,396,0 chrVI 262988 . A T 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.972;DP=144;Dels=0.00;FS=9.169;HaplotypeScore=21.5639;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;MQRankSum=1.963;QD=22.45;ReadPosRankSum=3.361;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:4,140:144:99:3268,351,0 chrVI 263140 . C T 3093 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.55;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3126,336,0 chrVI 263227 . T G 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.247;QD=21.55;ReadPosRankSum=1.709;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3276,372,0 chrVI 263313 . T G 4112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-0.918;QD=22.47;ReadPosRankSum=1.656;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4112,459,0 chrVI 263330 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=1.188;QD=18.58;ReadPosRankSum=1.672;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3269,372,0 chrVI 263429 . C G 4194.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.3449;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.97;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4194,462,0 chrVI 263468 . A C 4344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=182;Dels=0.00;FS=2.971;HaplotypeScore=12.8631;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.034;QD=23.87;ReadPosRankSum=2.409;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4344,495,0 chrVI 263506 . A C 3676.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.83;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3676,414,0 chrVI 263526 . C G 2743 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.47;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2776,312,0 chrVI 263550 . A G 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=0.993;QD=17.67;ReadPosRankSum=1.707;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2436,276,0 chrVI 263649 . G T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3301,357,0 chrVI 263791 . T C 2250 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.84;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2283,258,0 chrVI 263807 . A T 2354 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.83;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2387,270,0 chrVI 264038 . G A 2793 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.87;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2826,315,0 chrVI 264138 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=140;Dels=0.00;FS=7.257;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.184;QD=23.09;ReadPosRankSum=2.415;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3266,366,0 chrVI 264419 . G A 4132.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=23.34;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4132,444,0 chrVI 264434 . T C 3449.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.7620;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.42;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3449,393,0 chrVI 264809 . G A 3857.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.6558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3857,420,0 chrVI 264890 . G A 4795.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.0313;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.46;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,192:196:99:4795,516,0 chrVI 265430 . T C 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=135;Dels=0.01;FS=5.278;HaplotypeScore=11.0715;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-1.174;QD=21.40;ReadPosRankSum=2.932;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2922,333,0 chrVI 265792 . T A 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=138;Dels=0.00;FS=8.236;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.786;QD=22.10;ReadPosRankSum=2.395;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3083,330,0 chrVI 265986 . T C 3598.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.83;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3598,411,0 chrVI 266145 . T C 3683.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.23;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3683,420,0 chrVI 266222 . T C 3414.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.91;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3414,381,0 chrVI 266266 . A G 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=113;Dels=0.00;FS=3.032;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=0.490;QD=19.69;ReadPosRankSum=2.384;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2258,255,0 chrVI 266282 . C T 1972 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.26;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2005,222,0 chrVI 266294 . A T 2097 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=20.16;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2130,237,0 chrVI 266324 . T G 2097 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.9331;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.42;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2130,240,0 chrVI 266387 . T C 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.116;DP=146;Dels=0.00;FS=15.198;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.094;QD=19.66;ReadPosRankSum=4.135;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:6,140:146:99:2903,327,0 chrVI 266409 . A T 2661 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=17.86;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2694,291,0 chrVI 266412 . G A 2679 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=17.28;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2712,294,0 chrVI 266550 . A G 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=3.478;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.436;QD=23.56;ReadPosRankSum=1.709;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3463,387,0 chrVI 266577 . A T 3012 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=20.21;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3045,336,0 chrVI 266583 . T C 3302.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.8401;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.44;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3302,366,0 chrVI 266683 . C A 3581.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.1169;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.38;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3581,387,0 chrVI 266706 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.31;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3481,372,0 chrVI 266775 . A G 2909 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.5098;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.49;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2942,333,0 chrVI 266856 . T A 3016 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=20.94;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3049,324,0 chrVI 266889 . A G 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2181;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=0.336;QD=20.37;ReadPosRankSum=1.705;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2661,300,0 chrVI 267065 . G T 1205 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;QD=21.52;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1238,138,0 chrVI 267068 . C T 1182 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=40.4491;MLEAC=2;MLEAF=1.00;MQ=29.49;MQ0=0;QD=20.38;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1215,132,0 chrVI 267074 . C T 1061 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=40.4857;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=21.65;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1094,120,0 chrVI 267076 . C G 914 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=40.4857;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=19.87;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:947,108,0 chrVI 267091 . C A 331 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.55;SB=-7.604e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:39:364,39,0 chrVI 267092 . C A 332 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.60;SB=-7.604e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:39:365,39,0 chrVI 267095 . G A 323 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.15;SB=-7.604e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:39:356,39,0 chrVI 267097 . A G 313 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.65;SB=-7.604e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:39:346,39,0 chrVI 267100 . A G 322 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.10;SB=-7.604e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:39:355,39,0 chrVI 267104 . A T 329 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.45;SB=-7.604e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:39:362,39,0 chrVI 267106 . T A 332 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.60;SB=-7.604e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:39:365,39,0 chrVI 267107 . G C 325 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.25;SB=-7.604e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:39:358,39,0 chrVI 267110 . G T 238 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.90;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:33:271,33,0 chrVI 267113 . T C 327 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.35;SB=-7.604e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:39:360,39,0 chrVI 267124 . G T 283 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.26;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:36:316,36,0 chrVI 267129 . T C 155.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.43;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,35:35:21:188,21,0 chrVI 267131 . G T 162.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.63;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,35:35:21:195,21,0 chrVI 267136 . G A 135.13 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.65;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,37:37:18:168,18,0 chrVI 267140 . G T 130.13 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.72;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:18:163,18,0 chrVI 267144 . C G 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.11;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,33:33:12:102,12,0 chrVI 267146 . G T 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.45;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,32:33:9:80,9,0 chrVI 267148 . T C 75.51 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.29;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,33:33:12:108,12,0 chrVI 267150 . T C 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.02;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,33:33:12:99,12,0 chrVI 267156 . C G 115.13 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=2.74;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,42:42:18:148,18,0 chrVI 267162 . C G 87.26 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=2.18;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:15:120,15,0 chrVI 267165 . C T 97.26 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=2.56;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:15:130,15,0 chrVI 267166 . T C 87.26 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=2.30;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:15:120,15,0 chrVI 267170 . A G 116.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;MQRankSum=1.372;QD=2.42;ReadPosRankSum=1.660;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:1,47:48:18:149,18,0 chrVI 267176 . G A 164.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=3.22;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,51:51:21:197,21,0 chrVI 267183 . T C 203.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;QD=4.72;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,43:43:27:236,27,0 chrVI 267185 . A G 198.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;MQRankSum=0.524;QD=4.60;ReadPosRankSum=1.652;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:1,42:43:27:231,27,0 chrVI 267186 . A G 201.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=4.79;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,42:42:27:234,27,0 chrVI 267191 . G A 211.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=5.02;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,42:42:27:244,27,0 chrVI 267194 . T C 200.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=5.41;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,37:37:27:233,27,0 chrVI 267195 . G A 210.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=5.68;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,37:37:27:243,27,0 chrVI 267199 . G A 190.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;MQRankSum=0.901;QD=4.63;ReadPosRankSum=2.526;SB=-2.052e-03 GT:AD:DP:GQ:PL 1/1:4,37:41:27:223,27,0 chrVI 267201 . A T 188.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.229;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;MQRankSum=-0.725;QD=4.59;ReadPosRankSum=3.229;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:4,37:41:27:221,27,0 chrVI 267206 . A T 216.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=5.84;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,37:37:27:249,27,0 chrVII 278 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.26;MQ0=1;QD=2.41;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:1,4:5:6:43,6,0 chrVII 295 . T A 32.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.15;MQ0=1;QD=3.30;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:65,9,0 chrVII 318 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.15;MQ0=1;QD=1.20;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:43,6,0 chrVII 325 . A C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.66;MQ0=1;QD=1.09;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:1,10:11:6:43,6,0 chrVII 334 . C T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.66;MQ0=1;QD=1.09;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:1,10:11:6:43,6,0 chrVII 336 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.66;MQ0=1;QD=1.09;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:1,10:11:6:43,6,0 chrVII 338 . C T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.66;MQ0=1;QD=1.09;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:43,6,0 chrVII 501 . A G 88.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.804;DP=130;Dels=0.00;FS=59.832;HaplotypeScore=68.8617;MLEAC=1;MLEAF=0.500;MQ=21.61;MQ0=3;MQRankSum=2.634;QD=0.68;ReadPosRankSum=-2.722;SB=-5.833e-03 GT:AD:DP:GQ:PL 0/1:43,87:130:94:118,0,94 chrVII 508 . C T 345.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.882;DP=156;Dels=0.00;FS=9.175;HaplotypeScore=73.6272;MLEAC=2;MLEAF=1.00;MQ=20.52;MQ0=7;MQRankSum=5.399;QD=2.21;ReadPosRankSum=1.148;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:37,119:156:27:378,27,0 chrVII 520 . T G 464 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=20.55;MQ0=8;MQRankSum=-0.272;QD=2.40;ReadPosRankSum=2.370;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:3,190:193:60:497,60,0 chrVII 527 . A G 78.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.126;DP=210;Dels=0.00;FS=17.128;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=20.44;MQ0=8;MQRankSum=4.068;QD=0.37;ReadPosRankSum=0.865;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:150,60:210:99:108,0,310 chrVII 555 . C A 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.604;DP=245;Dels=0.00;FS=20.867;HaplotypeScore=54.9810;MLEAC=1;MLEAF=0.500;MQ=20.20;MQ0=12;MQRankSum=-1.289;QD=0.30;ReadPosRankSum=1.009;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:157,88:245:99:104,0,380 chrVII 561 . C A 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.130;DP=243;Dels=0.00;FS=14.367;HaplotypeScore=123.3886;MLEAC=1;MLEAF=0.500;MQ=20.30;MQ0=12;MQRankSum=-1.167;QD=0.16;ReadPosRankSum=-1.058;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:174,69:243:70:70,0,429 chrVII 568 . A C 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.002;DP=235;Dels=0.00;FS=14.356;HaplotypeScore=133.1400;MLEAC=1;MLEAF=0.500;MQ=20.83;MQ0=12;MQRankSum=-1.907;QD=0.15;ReadPosRankSum=-0.232;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:165,70:235:66:66,0,432 chrVII 569 . G T 71.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.541;DP=235;Dels=0.00;FS=20.346;HaplotypeScore=133.1400;MLEAC=1;MLEAF=0.500;MQ=20.83;MQ0=12;MQRankSum=-2.728;QD=0.30;ReadPosRankSum=2.258;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:154,81:235:99:101,0,378 chrVII 575 . C G 500 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=81.3732;MLEAC=2;MLEAF=1.00;MQ=21.18;MQ0=10;QD=2.31;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,204:216:63:533,63,0 chrVII 581 . C A 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=21.37;MQ0=9;MQRankSum=1.568;QD=0.17;ReadPosRankSum=-0.447;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:123,80:203:65:65,0,296 chrVII 595 . T C 426 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.707;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.48;MQ0=6;MQRankSum=-2.083;QD=2.43;ReadPosRankSum=3.799;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:5,170:175:54:459,54,0 chrVII 603 . T C 824 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.337;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=32.7283;MLEAC=2;MLEAF=1.00;MQ=24.19;MQ0=4;MQRankSum=-1.872;QD=4.88;ReadPosRankSum=4.467;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,162:169:99:857,99,0 chrVII 608 . G A 919 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.714;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=40.4174;MLEAC=2;MLEAF=1.00;MQ=24.87;MQ0=4;MQRankSum=6.157;QD=5.60;ReadPosRankSum=1.208;SB=3.00 GT:AD:DP:GQ:PL 1/1:52,112:164:57:952,57,0 chrVII 610 . C T 1050 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.723;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=40.4174;MLEAC=2;MLEAF=1.00;MQ=24.94;MQ0=4;MQRankSum=6.210;QD=6.86;ReadPosRankSum=0.704;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:27,126:153:85:1083,85,0 chrVII 615 . C T 982 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.289;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=34.8966;MLEAC=2;MLEAF=1.00;MQ=25.32;MQ0=4;MQRankSum=6.143;QD=6.29;ReadPosRankSum=2.048;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:40,116:156:73:1015,73,0 chrVII 617 . A G 872 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-7.631;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=34.8966;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=4;MQRankSum=6.802;QD=5.63;ReadPosRankSum=3.027;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:39,116:155:72:905,72,0 chrVII 627 . T A 1018 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.057;DP=171;Dels=0.00;FS=33.203;HaplotypeScore=7.3069;MLEAC=2;MLEAF=1.00;MQ=26.65;MQ0=4;MQRankSum=5.595;QD=5.95;ReadPosRankSum=3.578;SB=-6.865e-03 GT:AD:DP:GQ:PL 1/1:30,141:171:44:1051,44,0 chrVII 630 . C A 1079.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.349;DP=172;Dels=0.00;FS=67.771;HaplotypeScore=7.3069;MLEAC=1;MLEAF=0.500;MQ=26.48;MQ0=4;MQRankSum=6.582;QD=6.27;ReadPosRankSum=5.286;SB=-3.018e+00 GT:AD:DP:GQ:PL 0/1:31,141:172:34:1109,0,34 chrVII 641 . G A 1402 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.8337;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=8.87;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,158:158:99:1435,165,0 chrVII 647 . G A 1139.34 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.625;DP=158;Dels=0.00;FS=94.280;HaplotypeScore=1.9525;MLEAC=1;MLEAF=0.500;MQ=28.05;MQ0=0;MQRankSum=5.026;QD=7.21;ReadPosRankSum=3.711;SB=-3.348e+00 GT:AD:DP:GQ:PL 0/1:14,144:158:8:1169,0,8 chrVII 651 . T C 1113.20 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.869;DP=167;Dels=0.00;FS=95.387;HaplotypeScore=1.9525;MLEAC=1;MLEAF=0.500;MQ=27.56;MQ0=4;MQRankSum=4.788;QD=6.67;ReadPosRankSum=3.112;SB=-4.208e+00 GT:AD:DP:GQ:PL 0/1:14,153:167:2:1142,0,2 chrVII 663 . G A 1753 filter AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=27.53;MQ0=8;QD=10.02;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,175:175:99:1786,204,0 chrVII 673 . T A,G 2131.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.696;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.7223;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.14;MQ0=8;MQRankSum=-1.373;QD=10.55;ReadPosRankSum=1.696;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/2:1,61,140:202:99:2191,1204,1069,987,0,831 chrVII 680 . T C 1136.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.248;DP=226;Dels=0.00;FS=244.866;HaplotypeScore=24.0612;MLEAC=1;MLEAF=0.500;MQ=28.17;MQ0=9;MQRankSum=-1.468;QD=5.03;ReadPosRankSum=3.244;SB=-2.410e+02 GT:AD:DP:GQ:PL 0/1:73,153:226:99:1166,0,1058 chrVII 686 . A T 789.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.361;DP=264;Dels=0.00;FS=379.693;HaplotypeScore=22.4403;MLEAC=1;MLEAF=0.500;MQ=27.18;MQ0=9;MQRankSum=-2.158;QD=2.99;ReadPosRankSum=2.214;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:115,149:264:99:819,0,1946 chrVII 699 . T C 385.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.709;DP=317;Dels=0.00;FS=180.610;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=25.25;MQ0=9;MQRankSum=-3.103;QD=1.21;ReadPosRankSum=-3.970;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:247,70:317:99:415,0,2469 chrVII 710 . G A 371.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;DP=349;Dels=0.00;FS=180.325;HaplotypeScore=13.5854;MLEAC=1;MLEAF=0.500;MQ=23.84;MQ0=9;MQRankSum=-2.900;QD=1.06;ReadPosRankSum=-1.260;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:260,86:347:99:401,0,2423 chrVII 723 . T C 479.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.394;DP=366;Dels=0.00;FS=154.171;HaplotypeScore=9.4386;MLEAC=1;MLEAF=0.500;MQ=22.75;MQ0=18;MQRankSum=-1.862;QD=1.31;ReadPosRankSum=1.546;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:261,102:366:99:509,0,2107 chrVII 784 . T A 5219.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.808;DP=396;Dels=0.00;FS=50.361;HaplotypeScore=33.3492;MLEAC=2;MLEAF=1.00;MQ=23.55;MQ0=29;MQRankSum=5.211;QD=13.18;ReadPosRankSum=4.136;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:21,375:396:99:5219,576,0 chrVII 927 . T C 1115 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=24.18;MQ0=0;QD=12.25;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1148,135,0 chrVII 932 . G C 1131 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.05;MQ0=0;QD=12.43;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1164,132,0 chrVII 934 . T C 1084 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.98;MQ0=0;QD=12.04;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1117,129,0 chrVII 937 . A T 1148 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.30;MQ0=0;QD=11.71;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1181,129,0 chrVII 954 . A G 1336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.36;MQ0=0;MQRankSum=0.516;QD=10.20;ReadPosRankSum=1.706;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:1369,162,0 chrVII 978 . A G 2448 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.382;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.35;MQ0=0;MQRankSum=0.412;QD=14.57;ReadPosRankSum=1.711;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:2481,265,0 chrVII 981 . G T 2712 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.60;MQ0=0;QD=15.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2745,303,0 chrVII 988 . G T 2929 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.10;MQ0=0;QD=16.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:2962,321,0 chrVII 995 . A C 3179 filter AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;QD=16.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3212,345,0 chrVII 1011 . A G 3367.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=165.0084;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;MQRankSum=1.715;QD=16.84;ReadPosRankSum=1.715;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:3367,384,0 chrVII 1021 . G T 3317.01 filter AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=18.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3317,357,0 chrVII 1046 . T C 2286 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.398;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8725;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;MQRankSum=2.212;QD=18.44;ReadPosRankSum=2.410;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2319,261,0 chrVII 1053 . A G 1894 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.778;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8936;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;MQRankSum=1.673;QD=16.05;ReadPosRankSum=4.258;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:9,109:118:99:1927,222,0 chrVII 1070 . A T 1085 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.185;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;MQRankSum=1.493;QD=13.40;ReadPosRankSum=3.346;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,77:81:99:1118,129,0 chrVII 6189 . C T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;QD=8.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:48,6,0 chrVII 6193 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;MQRankSum=0.736;QD=7.26;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,2:3:6:53,6,0 chrVII 6214 . G A 1085 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=24.2807;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=0;QD=12.92;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,77:84:99:1118,123,0 chrVII 6314 . G A 4638.01 filter AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.5173;MLEAC=2;MLEAF=1.00;MQ=25.56;MQ0=11;QD=23.31;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:10,189:199:99:4638,539,0 chrVII 6317 . C T 3894.01 filter AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=25.12;MQ0=11;QD=21.28;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:10,173:183:99:3894,455,0 chrVII 6329 . A C 1322 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.09;MQ0=16;QD=13.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:15,83:98:99:1355,176,0 chrVII 6330 . C T 1338 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.39;MQ0=17;QD=14.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:15,79:94:99:1371,176,0 chrVII 6338 . G A 581 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.40;MQ0=19;QD=11.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:18,31:49:83:614,83,0 chrVII 6410 . A G 483.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.589;DP=179;Dels=0.00;FS=119.686;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.90;MQ0=68;MQRankSum=-3.972;QD=2.70;ReadPosRankSum=2.283;SB=-2.210e+02 GT:AD:DP:GQ:PL 0/1:114,65:179:99:513,0,1086 chrVII 6461 . A G 4311.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.274;DP=354;Dels=0.00;FS=688.764;HaplotypeScore=120.3421;MLEAC=2;MLEAF=1.00;MQ=24.17;MQ0=34;MQRankSum=9.040;QD=12.18;ReadPosRankSum=2.094;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:82,272:354:99:4311,211,0 chrVII 6470 . G T 2947.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.308;DP=351;Dels=0.00;FS=314.488;HaplotypeScore=107.2312;MLEAC=1;MLEAF=0.500;MQ=24.45;MQ0=23;MQRankSum=7.602;QD=8.40;ReadPosRankSum=1.229;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:169,181:351:99:2977,0,977 chrVII 6476 . C A 5129.01 filter AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=4.3905;MLEAC=2;MLEAF=1.00;MQ=24.72;MQ0=15;QD=15.31;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:14,321:335:99:5129,576,0 chrVII 6499 . T A 2014.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.047;DP=298;Dels=0.00;FS=279.265;HaplotypeScore=71.9824;MLEAC=1;MLEAF=0.500;MQ=24.64;MQ0=4;MQRankSum=4.759;QD=6.76;ReadPosRankSum=0.100;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:150,148:298:99:2044,0,1023 chrVII 6500 . G A 725.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.816;DP=298;Dels=0.00;FS=105.291;HaplotypeScore=71.3173;MLEAC=1;MLEAF=0.500;MQ=24.63;MQ0=4;MQRankSum=5.759;QD=2.43;ReadPosRankSum=0.863;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:233,65:298:99:755,0,2206 chrVII 6503 . G A 1841.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.949;DP=287;Dels=0.00;FS=277.327;HaplotypeScore=68.7412;MLEAC=1;MLEAF=0.500;MQ=24.73;MQ0=1;MQRankSum=4.769;QD=6.41;ReadPosRankSum=0.426;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:148,139:287:99:1871,0,961 chrVII 6509 . A G 3124 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.328;DP=249;Dels=0.00;FS=5.165;HaplotypeScore=52.5196;MLEAC=2;MLEAF=1.00;MQ=24.58;MQ0=0;MQRankSum=-0.633;QD=12.55;ReadPosRankSum=3.426;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:4,245:249:99:3157,380,0 chrVII 6515 . G A 1222.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.084;DP=245;Dels=0.00;FS=266.058;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=24.49;MQ0=0;MQRankSum=4.056;QD=4.99;ReadPosRankSum=0.557;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,106:245:99:1252,0,889 chrVII 6530 . A G 779.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.448;DP=220;Dels=0.00;FS=100.049;HaplotypeScore=7.3028;MLEAC=1;MLEAF=0.500;MQ=24.27;MQ0=0;MQRankSum=1.220;QD=3.54;ReadPosRankSum=-2.418;SB=-1.870e+02 GT:AD:DP:GQ:PL 0/1:131,88:220:99:809,0,722 chrVII 6545 . T C 253.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.464;DP=194;Dels=0.00;FS=191.329;HaplotypeScore=6.5991;MLEAC=1;MLEAF=0.500;MQ=22.93;MQ0=0;MQRankSum=1.966;QD=1.30;ReadPosRankSum=2.927;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,99:194:99:283,0,932 chrVII 6557 . A G 1273 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.446;DP=200;Dels=0.00;FS=11.991;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=21.39;MQ0=11;MQRankSum=-0.027;QD=6.36;ReadPosRankSum=2.403;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:14,184:200:99:1306,159,0 chrVII 6575 . C T 1456 filter AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=20.36;MQ0=14;QD=6.77;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,215:215:99:1489,180,0 chrVII 6596 . G A 791.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.979;DP=270;Dels=0.00;FS=24.519;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=17.23;MQ0=58;MQRankSum=3.050;QD=2.93;ReadPosRankSum=-3.893;SB=-1.240e+02 GT:AD:DP:GQ:PL 0/1:123,147:270:99:821,0,516 chrVII 6629 . G A 1046.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.859;DP=292;Dels=0.00;FS=129.299;HaplotypeScore=6.4873;MLEAC=1;MLEAF=0.500;MQ=16.36;MQ0=75;MQRankSum=2.897;QD=3.58;ReadPosRankSum=-0.059;SB=-8.220e+02 GT:AD:DP:GQ:PL 0/1:117,175:292:99:1076,0,420 chrVII 6697 . A G 2854 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.778;DP=207;Dels=0.00;FS=53.583;HaplotypeScore=62.3335;MLEAC=2;MLEAF=1.00;MQ=23.07;MQ0=14;MQRankSum=6.969;QD=13.79;ReadPosRankSum=1.778;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:42,164:207:99:2887,296,0 chrVII 6712 . T C 3377.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.602;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=91.4284;MLEAC=2;MLEAF=1.00;MQ=25.12;MQ0=6;MQRankSum=3.507;QD=16.64;ReadPosRankSum=1.093;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:16,185:203:99:3377,387,0 chrVII 6739 . C T 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.084;DP=282;Dels=0.00;FS=85.426;HaplotypeScore=33.2825;MLEAC=1;MLEAF=0.500;MQ=24.87;MQ0=3;MQRankSum=-4.442;QD=0.06;ReadPosRankSum=-5.546;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:236,43:282:46:46,0,3654 chrVII 6763 . T C 4682.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.037;DP=378;Dels=0.00;FS=30.758;HaplotypeScore=37.2262;MLEAC=2;MLEAF=1.00;MQ=22.29;MQ0=5;MQRankSum=-1.598;QD=12.39;ReadPosRankSum=5.125;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:9,369:378:99:4682,546,0 chrVII 6767 . A T 274.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.396;DP=390;Dels=0.02;FS=147.735;HaplotypeScore=37.4786;MLEAC=1;MLEAF=0.500;MQ=22.34;MQ0=6;MQRankSum=-3.622;QD=0.70;ReadPosRankSum=-0.859;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:291,93:384:99:304,0,3453 chrVII 6798 . A G 310.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.688;DP=472;Dels=0.00;FS=7.997;HaplotypeScore=16.8586;MLEAC=1;MLEAF=0.500;MQ=21.36;MQ0=16;MQRankSum=-8.316;QD=0.66;ReadPosRankSum=2.678;SB=-1.590e+02 GT:AD:DP:GQ:PL 0/1:312,158:472:99:340,0,4312 chrVII 6811 . A T 1972.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.807;DP=461;Dels=0.00;FS=4.237;HaplotypeScore=31.2374;MLEAC=1;MLEAF=0.500;MQ=20.45;MQ0=17;MQRankSum=3.678;QD=4.28;ReadPosRankSum=4.336;SB=-8.520e+02 GT:AD:DP:GQ:PL 0/1:290,170:460:99:2002,0,2099 chrVII 6844 . C G 1462.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;DP=334;Dels=0.00;FS=3.204;HaplotypeScore=126.9576;MLEAC=1;MLEAF=0.500;MQ=20.36;MQ0=27;MQRankSum=4.125;QD=4.38;ReadPosRankSum=-7.677;SB=-5.430e+02 GT:AD:DP:GQ:PL 0/1:198,134:334:99:1492,0,1381 chrVII 6862 . G T 228.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.848;DP=274;Dels=0.00;FS=4.753;HaplotypeScore=95.2377;MLEAC=1;MLEAF=0.500;MQ=21.24;MQ0=24;MQRankSum=-5.458;QD=0.83;ReadPosRankSum=2.340;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:191,82:274:99:258,0,2228 chrVII 6869 . C A 599.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.376;DP=218;Dels=0.00;FS=148.124;HaplotypeScore=115.8012;MLEAC=1;MLEAF=0.500;MQ=20.96;MQ0=15;MQRankSum=6.239;QD=2.75;ReadPosRankSum=0.242;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:140,73:218:99:629,0,1179 chrVII 6870 . T C 842.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.633;DP=212;Dels=0.00;FS=126.693;HaplotypeScore=112.8648;MLEAC=1;MLEAF=0.500;MQ=20.89;MQ0=15;MQRankSum=5.756;QD=3.97;ReadPosRankSum=1.584;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:126,86:212:99:872,0,952 chrVII 6874 . G A 163.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;DP=205;Dels=0.00;FS=121.700;HaplotypeScore=63.8694;MLEAC=1;MLEAF=0.500;MQ=21.21;MQ0=15;MQRankSum=2.310;QD=0.80;ReadPosRankSum=-2.394;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:171,33:205:99:193,0,1376 chrVII 6914 . T C 1279.04 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.932;DP=123;Dels=0.00;FS=46.106;HaplotypeScore=11.5656;MLEAC=1;MLEAF=0.500;MQ=25.34;MQ0=6;MQRankSum=7.149;QD=10.40;ReadPosRankSum=5.306;SB=-3.034e+00 GT:AD:DP:GQ:PL 0/1:37,85:123:18:1309,0,18 chrVII 6921 . T C 1576 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.356;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.3324;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=4;MQRankSum=1.381;QD=14.46;ReadPosRankSum=3.055;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,103:109:99:1609,177,0 chrVII 6925 . A T 1464 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.9664;MLEAC=2;MLEAF=1.00;MQ=26.11;MQ0=2;MQRankSum=0.210;QD=14.21;ReadPosRankSum=2.931;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,100:103:99:1497,162,0 chrVII 6928 . A C 1202 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.363;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=25.75;MQ0=2;MQRankSum=6.559;QD=11.67;ReadPosRankSum=3.152;SB=-6.654e-03 GT:AD:DP:GQ:PL 1/1:30,73:103:48:1235,48,0 chrVII 6932 . C G 702.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.078;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=24.45;MQ0=2;MQRankSum=7.384;QD=7.98;ReadPosRankSum=5.064;SB=-2.442e+00 GT:AD:DP:GQ:PL 1/1:32,55:88:4:733,4,0 chrVII 6933 . A G 668.20 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.674;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=24.59;MQ0=1;MQRankSum=7.400;QD=7.68;ReadPosRankSum=4.798;SB=-3.416e+00 GT:AD:DP:GQ:PL 0/1:32,54:87:2:697,0,2 chrVII 6935 . T C 561.14 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.363;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=24.25;MQ0=1;MQRankSum=7.706;QD=6.17;ReadPosRankSum=4.891;SB=-2.511e+00 GT:AD:DP:GQ:PL 0/1:36,55:91:12:591,0,12 chrVII 6936 . C T 564.34 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.991;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=24.25;MQ0=1;MQRankSum=7.755;QD=6.20;ReadPosRankSum=4.627;SB=-3.240e+00 GT:AD:DP:GQ:PL 0/1:36,55:91:8:594,0,8 chrVII 6937 . A T 680.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.159;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.6904;MLEAC=1;MLEAF=0.500;MQ=24.49;MQ0=1;MQRankSum=7.095;QD=6.94;ReadPosRankSum=5.268;SB=-6.588e-03 GT:AD:DP:GQ:PL 0/1:43,55:98:45:710,0,45 chrVII 6941 . G C 940.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.113;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.6246;MLEAC=1;MLEAF=0.500;MQ=24.72;MQ0=1;MQRankSum=6.692;QD=6.71;ReadPosRankSum=0.820;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,87:140:99:970,0,154 chrVII 6963 . G A 809.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.833;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=23.6134;MLEAC=1;MLEAF=0.500;MQ=23.62;MQ0=1;MQRankSum=6.561;QD=4.42;ReadPosRankSum=-0.553;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,90:183:99:839,0,591 chrVII 6964 . G C 758.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.171;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=23.6134;MLEAC=1;MLEAF=0.500;MQ=23.55;MQ0=1;MQRankSum=6.009;QD=4.08;ReadPosRankSum=-0.430;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,90:186:99:788,0,622 chrVII 6966 . A G 734.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.032;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=24.6067;MLEAC=1;MLEAF=0.500;MQ=23.52;MQ0=1;MQRankSum=5.789;QD=3.86;ReadPosRankSum=-0.523;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,90:190:99:764,0,688 chrVII 6971 . A T 296.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.374;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=147.1996;MLEAC=1;MLEAF=0.500;MQ=23.30;MQ0=2;MQRankSum=5.511;QD=1.42;ReadPosRankSum=-0.563;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:180,29:209:99:326,0,1230 chrVII 6974 . T A 653.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.144;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=152.1069;MLEAC=1;MLEAF=0.500;MQ=23.07;MQ0=4;MQRankSum=5.708;QD=3.07;ReadPosRankSum=0.100;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,91:213:99:683,0,821 chrVII 6985 . G A 260.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.062;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=86.2867;MLEAC=1;MLEAF=0.500;MQ=22.24;MQ0=5;MQRankSum=4.204;QD=1.19;ReadPosRankSum=2.624;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:148,71:219:99:290,0,1070 chrVII 6986 . A G 894.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.049;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=102.0236;MLEAC=1;MLEAF=0.500;MQ=22.21;MQ0=5;MQRankSum=7.120;QD=4.06;ReadPosRankSum=2.839;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,115:220:99:924,0,446 chrVII 6995 . A G 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=127.1020;MLEAC=1;MLEAF=0.500;MQ=22.18;MQ0=7;MQRankSum=2.822;QD=0.10;ReadPosRankSum=1.966;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:218,20:238:54:54,0,1341 chrVII 6996 . T A 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.490;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=111.3526;MLEAC=1;MLEAF=0.500;MQ=22.11;MQ0=7;MQRankSum=3.051;QD=0.15;ReadPosRankSum=1.699;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:215,20:235:65:65,0,1286 chrVII 6997 . A G 823.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.242;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=88.4023;MLEAC=1;MLEAF=0.500;MQ=22.34;MQ0=7;MQRankSum=-4.251;QD=3.40;ReadPosRankSum=0.647;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,145:242:99:853,0,394 chrVII 7004 . T G 317.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.226;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=125.1327;MLEAC=1;MLEAF=0.500;MQ=22.19;MQ0=7;MQRankSum=5.214;QD=1.34;ReadPosRankSum=1.788;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:199,37:237:99:347,0,935 chrVII 7008 . C G 78.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=115.4745;MLEAC=1;MLEAF=0.500;MQ=21.95;MQ0=7;MQRankSum=4.414;QD=0.32;ReadPosRankSum=-1.719;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:213,28:242:99:108,0,1199 chrVII 7009 . T C 1545 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=115.4745;MLEAC=2;MLEAF=1.00;MQ=22.08;MQ0=7;QD=6.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,232:235:99:1578,186,0 chrVII 7011 . T C 60.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.449;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=160.2218;MLEAC=1;MLEAF=0.500;MQ=21.99;MQ0=7;MQRankSum=3.696;QD=0.25;ReadPosRankSum=-1.908;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:209,28:237:90:90,0,1221 chrVII 7018 . G T 919.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=251.7037;MLEAC=1;MLEAF=0.500;MQ=22.28;MQ0=8;MQRankSum=-3.952;QD=4.25;ReadPosRankSum=6.797;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,137:216:99:949,0,338 chrVII 7020 . C A 1196.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.768;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=209.0168;MLEAC=1;MLEAF=0.500;MQ=22.17;MQ0=8;MQRankSum=-3.259;QD=5.81;ReadPosRankSum=4.590;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,175:206:99:1226,0,101 chrVII 7021 . A G 1132.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.754;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=209.0168;MLEAC=1;MLEAF=0.500;MQ=22.17;MQ0=8;MQRankSum=-4.305;QD=5.50;ReadPosRankSum=4.472;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,175:206:99:1162,0,112 chrVII 7027 . T G 585.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.682;DP=209;Dels=0.00;FS=20.240;HaplotypeScore=156.8480;MLEAC=1;MLEAF=0.500;MQ=21.86;MQ0=10;MQRankSum=4.920;QD=2.80;ReadPosRankSum=-0.307;SB=-9.701e+01 GT:AD:DP:GQ:PL 0/1:125,78:209:99:615,0,575 chrVII 7081 . T C 98.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245;DP=80;Dels=0.00;FS=43.978;HaplotypeScore=26.4696;MLEAC=1;MLEAF=0.500;MQ=21.76;MQ0=10;MQRankSum=2.201;QD=1.23;ReadPosRankSum=-4.072;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:60,20:80:99:128,0,142 chrVII 7088 . T C 171.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.580;DP=62;Dels=0.00;FS=6.156;HaplotypeScore=14.1262;MLEAC=2;MLEAF=1.00;MQ=21.35;MQ0=9;MQRankSum=1.101;QD=2.76;ReadPosRankSum=0.540;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:12,49:62:24:204,24,0 chrVII 7089 . A T 146.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DP=62;Dels=0.00;FS=9.303;HaplotypeScore=14.1262;MLEAC=2;MLEAF=1.00;MQ=21.35;MQ0=9;MQRankSum=1.229;QD=2.36;ReadPosRankSum=1.263;SB=-1.731e+02 GT:AD:DP:GQ:PL 1/1:12,50:62:21:179,21,0 chrVII 7099 . C T 119.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.320;DP=41;Dels=0.00;FS=11.663;HaplotypeScore=7.6490;MLEAC=2;MLEAF=1.00;MQ=23.05;MQ0=8;MQRankSum=2.150;QD=2.91;ReadPosRankSum=0.490;SB=-1.141e+02 GT:AD:DP:GQ:PL 1/1:10,31:41:18:152,18,0 chrVII 7108 . T C 90.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.722;DP=34;Dels=0.00;FS=15.119;HaplotypeScore=5.8793;MLEAC=2;MLEAF=1.00;MQ=22.59;MQ0=8;MQRankSum=2.261;QD=2.65;ReadPosRankSum=1.299;SB=-6.527e+01 GT:AD:DP:GQ:PL 1/1:10,24:34:15:123,15,0 chrVII 7126 . C G 45.97 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=1;QD=2.55;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:0,17:18:9:78,9,0 chrVII 7130 . A T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;QD=1.36;SB=-1.773e+00 GT:AD:DP:GQ:PL 1/1:0,15:16:6:53,6,0 chrVII 7267 . T A 490 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=4;MQRankSum=0.893;QD=13.24;ReadPosRankSum=0.998;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:57:523,57,0 chrVII 7283 . G A 503 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=4;QD=15.24;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:60:536,60,0 chrVII 7299 . A G 493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.075;DP=42;Dels=0.00;FS=32.925;HaplotypeScore=26.8844;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=3;MQRankSum=1.883;QD=11.74;ReadPosRankSum=3.766;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:8,34:42:60:526,60,0 chrVII 7378 . A G 1028.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;DP=82;Dels=0.00;FS=54.241;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=45.49;MQ0=0;MQRankSum=5.354;QD=12.54;ReadPosRankSum=2.518;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:28,54:82:99:1058,0,131 chrVII 7379 . C T 105.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.100;DP=82;Dels=0.00;FS=54.241;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=45.49;MQ0=0;MQRankSum=-5.041;QD=1.28;ReadPosRankSum=-2.332;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:54,28:82:99:135,0,1011 chrVII 7398 . A G 1337 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=18.83;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1370,150,0 chrVII 7460 . C T 194.03 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.66;MQ0=6;QD=5.88;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:24:227,24,0 chrVII 7467 . T G 126.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.50;MQ0=6;MQRankSum=-0.377;QD=4.20;ReadPosRankSum=1.583;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:1,28:30:18:159,18,0 chrVII 7475 . A G 182.03 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.84;MQ0=7;QD=4.67;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:24:215,24,0 chrVII 7485 . A G 224 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.04;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=18.89;MQ0=7;QD=4.57;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:30:257,30,0 chrVII 7528 . G A 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.871;DP=113;Dels=0.00;FS=13.572;HaplotypeScore=7.3991;MLEAC=1;MLEAF=0.500;MQ=36.58;MQ0=4;MQRankSum=-3.458;QD=0.50;ReadPosRankSum=2.524;SB=-8.501e+01 GT:AD:DP:GQ:PL 0/1:77,34:113:87:87,0,1095 chrVII 7535 . T C 83.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.699;DP=131;Dels=0.00;FS=21.158;HaplotypeScore=89.3945;MLEAC=1;MLEAF=0.500;MQ=37.67;MQ0=1;MQRankSum=-3.145;QD=0.63;ReadPosRankSum=1.082;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:90,41:131:99:113,0,1419 chrVII 7562 . C T 261.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.834;DP=169;Dels=0.00;FS=7.947;HaplotypeScore=44.7692;MLEAC=1;MLEAF=0.500;MQ=39.57;MQ0=1;MQRankSum=-3.927;QD=1.54;ReadPosRankSum=-0.030;SB=-1.820e+02 GT:AD:DP:GQ:PL 0/1:120,49:169:99:291,0,2183 chrVII 7604 . C T 253.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.776;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.1810;MLEAC=1;MLEAF=0.500;MQ=38.16;MQ0=1;MQRankSum=-3.615;QD=1.76;ReadPosRankSum=1.118;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:103,38:144:99:283,0,1914 chrVII 7633 . T C 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.121;DP=107;Dels=0.00;FS=1.069;HaplotypeScore=9.6649;MLEAC=1;MLEAF=0.500;MQ=30.39;MQ0=11;MQRankSum=-4.326;QD=0.35;ReadPosRankSum=1.302;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:85,21:107:67:67,0,1191 chrVII 7636 . G T 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.077;DP=103;Dels=0.00;FS=1.058;HaplotypeScore=8.0328;MLEAC=1;MLEAF=0.500;MQ=28.30;MQ0=11;MQRankSum=-4.093;QD=0.27;ReadPosRankSum=0.937;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:81,21:103:58:58,0,1074 chrVII 7668 . T C 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790;DP=99;Dels=0.00;FS=1.074;HaplotypeScore=8.7190;MLEAC=1;MLEAF=0.500;MQ=23.88;MQ0=12;MQRankSum=-2.415;QD=0.13;ReadPosRankSum=0.739;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,20:99:43:43,0,1055 chrVII 7671 . A T 63.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799;DP=106;Dels=0.00;FS=2.087;HaplotypeScore=10.8747;MLEAC=1;MLEAF=0.500;MQ=23.17;MQ0=12;MQRankSum=-2.642;QD=0.59;ReadPosRankSum=-0.711;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,26:106:93:93,0,1123 chrVII 7672 . G A 1114.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.916;DP=111;Dels=0.00;FS=1.960;HaplotypeScore=10.8747;MLEAC=1;MLEAF=0.500;MQ=22.69;MQ0=12;MQRankSum=3.276;QD=10.04;ReadPosRankSum=1.103;SB=-1.750e+02 GT:AD:DP:GQ:PL 0/1:29,81:111:88:1144,0,88 chrVII 7683 . C T 129.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.381;DP=121;Dels=0.00;FS=2.767;HaplotypeScore=3.2416;MLEAC=1;MLEAF=0.500;MQ=22.96;MQ0=12;MQRankSum=-3.068;QD=1.07;ReadPosRankSum=-1.402;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:82,39:121:99:159,0,1182 chrVII 7689 . G T 138.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.574;DP=130;Dels=0.00;FS=0.724;HaplotypeScore=4.7755;MLEAC=1;MLEAF=0.500;MQ=24.46;MQ0=12;MQRankSum=-2.346;QD=1.06;ReadPosRankSum=-2.051;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:82,47:130:99:168,0,1248 chrVII 7723 . T C 782.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.154;DP=199;Dels=0.00;FS=7.132;HaplotypeScore=7.1832;MLEAC=1;MLEAF=0.500;MQ=31.65;MQ0=5;MQRankSum=-1.145;QD=3.93;ReadPosRankSum=1.248;SB=-2.850e+02 GT:AD:DP:GQ:PL 0/1:104,95:199:99:812,0,1732 chrVII 7809 . C T 272.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.484;DP=118;Dels=0.00;FS=53.346;HaplotypeScore=7.1416;MLEAC=1;MLEAF=0.500;MQ=21.50;MQ0=24;MQRankSum=-0.829;QD=2.31;ReadPosRankSum=-1.717;SB=-1.360e+02 GT:AD:DP:GQ:PL 0/1:63,55:118:99:302,0,422 chrVII 7847 . C G 87.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.131;DP=104;Dels=0.00;FS=94.260;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=19.83;MQ0=19;MQRankSum=-1.632;QD=0.84;ReadPosRankSum=1.825;SB=-8.688e+01 GT:AD:DP:GQ:PL 0/1:65,39:104:99:117,0,481 chrVII 7852 . G T 73.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.211;DP=104;Dels=0.00;FS=103.472;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=19.65;MQ0=17;MQRankSum=-1.907;QD=0.70;ReadPosRankSum=1.996;SB=-7.088e+01 GT:AD:DP:GQ:PL 0/1:67,37:104:99:103,0,581 chrVII 7857 . A G 530.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.424;DP=105;Dels=0.00;FS=113.168;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=19.52;MQ0=16;MQRankSum=1.393;QD=5.05;ReadPosRankSum=-1.853;SB=-5.149e-03 GT:AD:DP:GQ:PL 0/1:36,69:105:84:560,0,84 chrVII 7860 . T C 60.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.112;DP=103;Dels=0.00;FS=109.998;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=19.30;MQ0=17;MQRankSum=-2.215;QD=0.58;ReadPosRankSum=1.201;SB=-3.988e+01 GT:AD:DP:GQ:PL 0/1:67,36:103:90:90,0,530 chrVII 7867 . G A 148.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.068;DP=110;Dels=0.00;FS=87.106;HaplotypeScore=5.5440;MLEAC=1;MLEAF=0.500;MQ=20.25;MQ0=19;MQRankSum=-1.678;QD=1.35;ReadPosRankSum=-1.219;SB=-1.409e+02 GT:AD:DP:GQ:PL 0/1:67,43:110:99:178,0,485 chrVII 7886 . C T 243.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;DP=111;Dels=0.00;FS=60.540;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=23.69;MQ0=17;MQRankSum=-0.678;QD=2.19;ReadPosRankSum=-4.959;SB=-1.290e+02 GT:AD:DP:GQ:PL 0/1:61,50:111:99:273,0,397 chrVII 7889 . T C 276.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.260;DP=116;Dels=0.00;FS=59.330;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=23.96;MQ0=18;MQRankSum=-0.532;QD=2.38;ReadPosRankSum=-4.603;SB=-1.230e+02 GT:AD:DP:GQ:PL 0/1:62,54:116:99:306,0,403 chrVII 7916 . A G 273.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.441;DP=132;Dels=0.00;FS=24.720;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=27.69;MQ0=22;MQRankSum=-1.534;QD=2.07;ReadPosRankSum=-1.560;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:78,53:132:99:303,0,666 chrVII 7941 . T C 771.64 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=28.50;MQ0=24;MQRankSum=0.405;QD=6.71;ReadPosRankSum=3.783;SB=-1.297e+02 GT:AD:DP:GQ:PL 0/1:34,80:115:5:801,0,5 chrVII 7989 . A G 331.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;DP=79;Dels=0.00;FS=12.412;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.500;MQ=22.26;MQ0=32;MQRankSum=-1.854;QD=4.19;ReadPosRankSum=-0.807;SB=-9.702e+01 GT:AD:DP:GQ:PL 0/1:37,42:79:89:361,0,89 chrVII 8004 . C T 100.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.197;DP=56;Dels=0.00;FS=7.204;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=14.69;MQ0=30;MQRankSum=-2.370;QD=1.79;ReadPosRankSum=-0.694;SB=-8.004e+01 GT:AD:DP:GQ:PL 0/1:34,22:56:94:130,0,94 chrVII 8012 . A T 264 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=48;Dels=0.00;FS=3.245;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.67;MQ0=29;MQRankSum=1.004;QD=5.50;ReadPosRankSum=1.552;SB=-8.200e+01 GT:AD:DP:GQ:PL 1/1:1,47:48:36:297,36,0 chrVII 8022 . G A 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.005;DP=42;Dels=0.00;FS=36.994;HaplotypeScore=9.2834;MLEAC=1;MLEAF=0.500;MQ=15.95;MQ0=27;MQRankSum=-1.355;QD=1.36;ReadPosRankSum=-0.177;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:32,10:42:87:87,0,100 chrVII 8038 . T C 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;DP=46;Dels=0.00;FS=71.152;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=17.75;MQ0=19;MQRankSum=-2.492;QD=1.02;ReadPosRankSum=0.567;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:30,16:46:77:77,0,165 chrVII 8051 . A G 247.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.563;DP=79;Dels=0.00;FS=26.185;HaplotypeScore=17.5357;MLEAC=1;MLEAF=0.500;MQ=21.89;MQ0=17;MQRankSum=-2.228;QD=3.13;ReadPosRankSum=-0.784;SB=-1.530e+02 GT:AD:DP:GQ:PL 0/1:30,48:79:99:277,0,220 chrVII 8053 . A T 217.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.456;DP=78;Dels=0.00;FS=22.975;HaplotypeScore=15.1697;MLEAC=1;MLEAF=0.500;MQ=21.91;MQ0=15;MQRankSum=4.182;QD=2.78;ReadPosRankSum=1.406;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,26:78:99:247,0,379 chrVII 8089 . A G 489.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.295;DP=75;Dels=0.00;FS=26.298;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.61;MQ0=8;MQRankSum=-1.660;QD=6.52;ReadPosRankSum=0.008;SB=-1.640e+02 GT:AD:DP:GQ:PL 0/1:16,59:75:99:519,0,239 chrVII 8167 . T G 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.601;DP=47;Dels=0.00;FS=5.421;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=17.74;MQ0=21;MQRankSum=-3.757;QD=1.06;ReadPosRankSum=2.486;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:28,19:47:80:80,0,138 chrVII 8172 . T C 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;DP=53;Dels=0.00;FS=5.374;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=18.19;MQ0=25;MQRankSum=-4.132;QD=0.83;ReadPosRankSum=2.410;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:34,19:53:74:74,0,176 chrVII 8205 . A G 348 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.02;MQ0=42;QD=5.04;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:45:381,45,0 chrVII 8216 . T C 593 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=87;Dels=0.00;FS=3.324;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=21.72;MQ0=44;MQRankSum=-0.524;QD=6.82;ReadPosRankSum=1.652;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:72:626,72,0 chrVII 8241 . G A 84.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.109;DP=114;Dels=0.00;FS=24.782;HaplotypeScore=24.8595;MLEAC=1;MLEAF=0.500;MQ=24.08;MQ0=51;MQRankSum=-6.469;QD=0.74;ReadPosRankSum=-1.201;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:88,25:114:99:114,0,750 chrVII 8247 . T C 84.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.493;DP=110;Dels=0.00;FS=28.778;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=24.05;MQ0=48;MQRankSum=-5.573;QD=0.76;ReadPosRankSum=-0.722;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:86,23:110:99:114,0,814 chrVII 8248 . T C 85.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;DP=108;Dels=0.00;FS=28.778;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=24.28;MQ0=46;MQRankSum=-5.573;QD=0.79;ReadPosRankSum=-0.603;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:84,23:108:99:115,0,721 chrVII 8262 . C T 100.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.910;DP=112;Dels=0.00;FS=44.724;HaplotypeScore=4.9417;MLEAC=1;MLEAF=0.500;MQ=24.33;MQ0=39;MQRankSum=-4.981;QD=0.89;ReadPosRankSum=-2.125;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:79,32:112:99:130,0,732 chrVII 8270 . G A 101.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.845;DP=103;Dels=0.00;FS=55.207;HaplotypeScore=4.1530;MLEAC=1;MLEAF=0.500;MQ=24.93;MQ0=31;MQRankSum=-4.435;QD=0.98;ReadPosRankSum=-2.081;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:72,31:103:99:131,0,752 chrVII 8275 . C T 101.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.618;DP=100;Dels=0.00;FS=68.314;HaplotypeScore=23.6106;MLEAC=1;MLEAF=0.500;MQ=24.86;MQ0=30;MQRankSum=-4.268;QD=1.01;ReadPosRankSum=-1.963;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,33:100:99:131,0,750 chrVII 8276 . C T 101.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.209;DP=98;Dels=0.00;FS=68.314;HaplotypeScore=23.6106;MLEAC=1;MLEAF=0.500;MQ=25.11;MQ0=28;MQRankSum=-4.280;QD=1.03;ReadPosRankSum=-1.904;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,31:98:99:131,0,744 chrVII 8292 . T C 51.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;DP=87;Dels=0.00;FS=76.458;HaplotypeScore=1.3990;MLEAC=1;MLEAF=0.500;MQ=25.31;MQ0=25;MQRankSum=-3.761;QD=0.59;ReadPosRankSum=0.257;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,25:87:81:81,0,713 chrVII 8293 . C T 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;DP=86;Dels=0.00;FS=76.458;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=25.14;MQ0=25;MQRankSum=-3.644;QD=0.60;ReadPosRankSum=0.242;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,25:86:82:82,0,693 chrVII 8296 . C T 68.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.984;DP=83;Dels=0.00;FS=76.458;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=25.59;MQ0=22;MQRankSum=-3.791;QD=0.82;ReadPosRankSum=0.389;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,25:83:98:98,0,655 chrVII 8297 . G A 89.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.287;DP=82;Dels=0.00;FS=76.458;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=21;MQRankSum=-3.776;QD=1.09;ReadPosRankSum=0.433;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,25:82:99:119,0,655 chrVII 8307 . G A 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.611;DP=68;Dels=0.00;FS=59.210;HaplotypeScore=18.7951;MLEAC=1;MLEAF=0.500;MQ=24.03;MQ0=20;MQRankSum=-2.286;QD=0.84;ReadPosRankSum=-0.776;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,22:68:87:87,0,421 chrVII 8379 . T G 60.18 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.20;MQ0=21;MQRankSum=-0.736;QD=2.23;ReadPosRankSum=-0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,5:27:11:90,0,11 chrVII 8380 . C T 60.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.20;MQ0=21;MQRankSum=-0.736;QD=2.23;ReadPosRankSum=-0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,5:27:10:90,0,10 chrVII 8391 . A T 188.01 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=13.96;MQ0=25;QD=4.95;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:27:221,27,0 chrVII 8442 . T C 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;DP=80;Dels=0.00;FS=1.448;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.38;MQ0=38;MQRankSum=-2.176;QD=0.75;ReadPosRankSum=-0.613;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:68,12:80:90:90,0,524 chrVII 8460 . C A 508.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.403;DP=76;Dels=0.00;FS=1.448;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=19.88;MQ0=34;MQRankSum=2.023;QD=6.68;ReadPosRankSum=4.261;SB=-2.020e+02 GT:AD:DP:GQ:PL 0/1:12,64:76:91:538,0,91 chrVII 8574 . T A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.45;MQ0=13;QD=0.31;SB=-2.377e+01 GT:AD:DP:GQ:PL 1/1:0,26:39:6:43,6,0 chrVII 8825 . C T 528 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.964;DP=72;Dels=0.00;FS=19.482;HaplotypeScore=7.5539;MLEAC=2;MLEAF=1.00;MQ=31.14;MQ0=1;MQRankSum=1.859;QD=7.33;ReadPosRankSum=0.956;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:3,69:72:60:561,60,0 chrVII 8831 . C T 564 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=71;Dels=0.00;FS=18.390;HaplotypeScore=60.8585;MLEAC=2;MLEAF=1.00;MQ=31.60;MQ0=0;MQRankSum=1.894;QD=7.94;ReadPosRankSum=1.477;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:66:597,66,0 chrVII 8835 . C T 632 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.922;DP=77;Dels=0.00;FS=8.073;HaplotypeScore=69.2032;MLEAC=2;MLEAF=1.00;MQ=31.70;MQ0=0;MQRankSum=1.687;QD=8.21;ReadPosRankSum=0.247;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:72:665,72,0 chrVII 8879 . T C 1250 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.99;MQ0=0;QD=13.74;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1283,141,0 chrVII 8880 . G C 1234 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=0;QD=13.87;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1267,141,0 chrVII 8937 . G A 2119 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;QD=19.26;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2152,237,0 chrVII 8957 . A G 1970 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;QD=18.07;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2003,231,0 chrVII 8975 . C T 2307 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=18.31;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2340,258,0 chrVII 8977 . A G 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=128;Dels=0.00;FS=8.508;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;MQRankSum=1.249;QD=17.14;ReadPosRankSum=2.353;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2227,258,0 chrVII 9029 . G T 2400 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=42.95;MQ0=0;QD=18.60;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2433,264,0 chrVII 9044 . T G 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.387;DP=148;Dels=0.01;FS=9.005;HaplotypeScore=8.2657;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;MQRankSum=-2.054;QD=18.78;ReadPosRankSum=3.375;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:4,143:147:99:2813,318,0 chrVII 9188 . C T 3468.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=22.67;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3468,369,0 chrVII 9253 . T C 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-1.095;QD=23.07;ReadPosRankSum=1.652;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4014,441,0 chrVII 9430 . A G 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-1.598;QD=23.25;ReadPosRankSum=1.710;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3651,402,0 chrVII 9885 . T A 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.7702;MLEAC=2;MLEAF=1.00;MQ=60.49;MQ0=0;MQRankSum=-0.259;QD=22.53;ReadPosRankSum=1.652;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3943,429,0 chrVII 9986 . A G 2533 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2566,294,0 chrVII 10029 . G A 2843 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2876,306,0 chrVII 10116 . A G 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.066;QD=23.29;ReadPosRankSum=1.679;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3061,342,0 chrVII 10166 . G A 2516 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.27;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2549,267,0 chrVII 10242 . T A 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=12.9145;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=1.503;QD=20.93;ReadPosRankSum=1.699;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2293,249,0 chrVII 10386 . T C 2040 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=37.89;MQ0=14;MQRankSum=-0.994;QD=16.45;ReadPosRankSum=1.700;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,115:124:99:2073,234,0 chrVII 10427 . C T 2363 filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.24;MQ0=9;QD=19.37;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2396,258,0 chrVII 10505 . T A 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=130;Dels=0.00;FS=3.505;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;MQRankSum=-0.027;QD=22.46;ReadPosRankSum=-1.359;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2953,295,0 chrVII 10510 . T A 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.199;DP=123;Dels=0.00;FS=3.540;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;MQRankSum=1.391;QD=22.02;ReadPosRankSum=0.767;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2741,303,0 chrVII 10527 . T A 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.369;DP=129;Dels=0.00;FS=3.300;HaplotypeScore=8.8990;MLEAC=2;MLEAF=1.00;MQ=42.96;MQ0=3;MQRankSum=1.062;QD=19.62;ReadPosRankSum=1.648;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2564,270,0 chrVII 10569 . G A 1900 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.086;DP=116;Dels=0.00;FS=3.322;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=39.88;MQ0=11;MQRankSum=0.909;QD=16.38;ReadPosRankSum=1.080;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:7,107:116:99:1933,189,0 chrVII 10671 . T C 167.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.718;DP=123;Dels=0.00;FS=20.164;HaplotypeScore=15.0408;MLEAC=1;MLEAF=0.500;MQ=34.22;MQ0=17;MQRankSum=-3.112;QD=1.36;ReadPosRankSum=-0.431;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,24:123:99:197,0,1661 chrVII 10700 . G C 1465 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.02;FS=0.000;HaplotypeScore=22.7382;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=17;QD=15.92;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1498,174,0 chrVII 10705 . G C 1515 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=18;QD=15.78;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1548,174,0 chrVII 10804 . A C,G 1126.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.304;DP=101;Dels=0.00;FS=3.459;HaplotypeScore=3.1547;MLEAC=1,1;MLEAF=0.500,0.500;MQ=26.46;MQ0=0;MQRankSum=-2.328;QD=11.15;ReadPosRankSum=1.523;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/2:2,31,68:101:27:1183,1024,1023,142,0,27 chrVII 10812 . C T 1031 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=0;QD=11.99;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1064,126,0 chrVII 10814 . T C 1186 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=24.58;MQ0=0;QD=14.46;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1219,135,0 chrVII 10823 . T C 1023 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.50;MQ0=0;QD=14.01;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1056,117,0 chrVII 10827 . G A 835 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.87;MQ0=0;QD=14.65;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:93:868,93,0 chrVII 10829 . C G 704 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.87;MQ0=0;QD=12.35;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:87:737,87,0 chrVII 10843 . T G 534 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.12;MQ0=0;QD=11.61;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:66:567,66,0 chrVII 10851 . A G 382 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.10;MQ0=0;QD=12.73;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:48:415,48,0 chrVII 10852 . A C 395 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.10;MQ0=0;QD=13.17;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:48:428,48,0 chrVII 10855 . A T 380 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.10;MQ0=0;QD=12.67;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:45:413,45,0 chrVII 10856 . T C 326 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.10;MQ0=0;QD=10.87;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:42:359,42,0 chrVII 10867 . A C 282 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.00;MQ0=1;QD=9.72;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:36:315,36,0 chrVII 10875 . T C 231 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.53;MQ0=1;QD=9.24;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,24:25:30:264,30,0 chrVII 10877 . C G 218 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.53;MQ0=1;QD=8.72;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:30:251,30,0 chrVII 10975 . T A 508 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=1;QD=8.61;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:60:541,60,0 chrVII 10982 . A T 50.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;DP=67;Dels=0.01;FS=5.470;HaplotypeScore=3.5104;MLEAC=1;MLEAF=0.500;MQ=24.26;MQ0=0;MQRankSum=-1.187;QD=0.75;ReadPosRankSum=-2.627;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:43,23:66:80:80,0,350 chrVII 10987 . T C 367.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=6.5877;MLEAC=1;MLEAF=0.500;MQ=24.33;MQ0=0;MQRankSum=0.724;QD=5.17;ReadPosRankSum=2.753;SB=-7.801e+01 GT:AD:DP:GQ:PL 0/1:24,46:70:69:397,0,69 chrVII 11008 . G A 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.523;DP=73;Dels=0.01;FS=10.439;HaplotypeScore=6.8429;MLEAC=1;MLEAF=0.500;MQ=23.63;MQ0=2;MQRankSum=-1.360;QD=0.59;ReadPosRankSum=-1.069;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:48,24:72:73:73,0,464 chrVII 11065 . T C 1002.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.094;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=124.3920;MLEAC=1;MLEAF=0.500;MQ=26.76;MQ0=10;MQRankSum=0.521;QD=7.21;ReadPosRankSum=-0.017;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,77:139:99:1032,0,557 chrVII 11076 . A G 1857 filter AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.61;MQ0=11;QD=13.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1890,216,0 chrVII 11123 . G A 677 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.48;MQ0=15;QD=7.52;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,90:90:75:710,75,0 chrVII 11217 . T C 397 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.38;MQ0=0;QD=18.05;SB=-6.552e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:54:430,54,0 chrVII 11247 . T C 1505 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=2;QD=17.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1538,177,0 chrVII 11253 . C T 1801 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.19;MQ0=3;QD=18.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1834,210,0 chrVII 11282 . T C 2359 filter AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.24;MQ0=33;QD=14.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:2392,273,0 chrVII 11323 . G A 551.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.193;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=1;MLEAF=0.500;MQ=25.87;MQ0=34;MQRankSum=0.614;QD=4.63;ReadPosRankSum=-0.234;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,64:119:99:581,0,376 chrVII 11607 . T C 119.13 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.36;MQ0=2;QD=4.25;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:18:152,18,0 chrVII 11622 . C T 246 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.57;MQ0=2;QD=4.64;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,53:53:30:279,30,0 chrVII 11625 . A G 309 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=2;QD=5.33;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:39:342,39,0 chrVII 11635 . G A 481 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=31.55;MQ0=2;QD=5.73;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,81:84:57:514,57,0 chrVII 11820 . T C 1183 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=18.78;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1216,138,0 chrVII 11833 . C T 1232 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=20.20;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1265,141,0 chrVII 12020 . A G 2198 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.14;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2231,249,0 chrVII 12355 . A G 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.787;QD=23.09;ReadPosRankSum=1.669;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2573,288,0 chrVII 12964 . A G 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=139;Dels=0.00;FS=3.023;HaplotypeScore=7.7650;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.221;QD=21.92;ReadPosRankSum=2.397;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3080,348,0 chrVII 13164 . C T 2528 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2561,279,0 chrVII 13726 . G T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.0056;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.30;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3434,363,0 chrVII 13749 . T C 3552.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.20;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3552,399,0 chrVII 13894 . C G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.60;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3266,363,0 chrVII 15337 . A G 5031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=215;Dels=0.00;FS=6.857;HaplotypeScore=16.2655;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-2.138;QD=23.40;ReadPosRankSum=2.369;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:2,212:215:99:5031,561,0 chrVII 15470 . T C 4987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=220;Dels=0.00;FS=6.282;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.084;QD=22.67;ReadPosRankSum=2.416;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:4987,573,0 chrVII 15518 . C T 5139.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=22.4177;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5139,558,0 chrVII 15848 . T C 9809.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.600;DP=434;Dels=0.00;FS=9.213;HaplotypeScore=15.5090;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.757;QD=22.60;ReadPosRankSum=2.803;SB=-5.291e+03 GT:AD:DP:GQ:PL 1/1:3,430:434:99:9809,1103,0 chrVII 16069 . G A 6164.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=17.1747;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.66;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:6164,655,0 chrVII 16509 . T C 3453.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.32;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3453,387,0 chrVII 16563 . A G 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=3.375;HaplotypeScore=11.5541;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.816;QD=23.27;ReadPosRankSum=1.712;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4072,462,0 chrVII 16596 . C T 3738.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.36;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3738,402,0 chrVII 16686 . T C 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=3.097;HaplotypeScore=5.9222;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.608;QD=23.66;ReadPosRankSum=1.709;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3573,399,0 chrVII 16750 . C T 3550.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.05;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3550,378,0 chrVII 16867 . A T 1309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5467;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.016;QD=17.22;ReadPosRankSum=2.320;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1342,144,0 chrVII 16879 . G A 1410 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.86;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1443,156,0 chrVII 17017 . C T 612 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=14.93;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:69:645,69,0 chrVII 17234 . A G 2133 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2166,243,0 chrVII 17261 . C T 2213 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2246,246,0 chrVII 17690 . T C 2725 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.12;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2758,309,0 chrVII 17724 . C A 2631 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.14;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2664,282,0 chrVII 17750 . G A 2328 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.76;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2361,252,0 chrVII 17785 . G C 2016 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.40;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2049,225,0 chrVII 17818 . T C 2032 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.91;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2065,228,0 chrVII 17862 . T A 1679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-1.647;QD=20.48;ReadPosRankSum=1.689;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1712,189,0 chrVII 17874 . T G 1747 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.55;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1780,201,0 chrVII 17994 . A G 1812 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.83;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1845,204,0 chrVII 19051 . A T 4186.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.34;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4186,456,0 chrVII 19127 . G A 4303.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.77;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4303,471,0 chrVII 19222 . G A 4687.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.21;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4687,516,0 chrVII 19402 . A G 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.0421;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.229;QD=22.94;ReadPosRankSum=1.648;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2877,321,0 chrVII 19628 . T C 2811 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=22.31;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2844,318,0 chrVII 19710 . C A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;QD=23.11;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3467,384,0 chrVII 19740 . T C 2297 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.01;MQ0=0;QD=20.69;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2330,270,0 chrVII 19775 . T C 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=75;Dels=0.00;FS=5.209;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.38;MQ0=0;MQRankSum=0.973;QD=17.59;ReadPosRankSum=-0.688;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1352,156,0 chrVII 19776 . T C 1341 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=18.62;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1374,156,0 chrVII 19796 . C G 972 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=0.900;QD=13.69;ReadPosRankSum=2.901;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:3,68:71:99:1005,114,0 chrVII 19798 . G T 975 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.615;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=-1.615;QD=13.73;ReadPosRankSum=2.901;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:3,68:71:99:1008,114,0 chrVII 19801 . T A 1071 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=14.28;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1104,117,0 chrVII 19808 . G A 1167 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.9704;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;QD=14.96;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1200,129,0 chrVII 19826 . A G 1343 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.80;MQ0=0;QD=14.29;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1376,156,0 chrVII 19841 . A G 1333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=0;MQRankSum=0.292;QD=13.20;ReadPosRankSum=1.698;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1366,156,0 chrVII 19850 . A T 1530 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.47;MQ0=0;QD=14.30;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1563,168,0 chrVII 19879 . G A 1797 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.59;MQ0=0;QD=17.11;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1830,201,0 chrVII 19896 . A G 1477 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.94;MQ0=0;QD=15.07;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1510,171,0 chrVII 19914 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.59;MQ0=0;QD=15.46;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1455,159,0 chrVII 19926 . G C 1265 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.87;MQ0=0;QD=15.43;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1298,147,0 chrVII 19961 . G A 627 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.50;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:75:660,75,0 chrVII 19962 . A G 617 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.35;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:75:650,75,0 chrVII 19964 . G A 633 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.59;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:75:666,75,0 chrVII 19992 . T C 604 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=0;QD=9.44;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:75:637,75,0 chrVII 20011 . T C 441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.74;MQ0=0;MQRankSum=-1.199;QD=6.78;ReadPosRankSum=1.679;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:54:474,54,0 chrVII 20016 . T C 444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.4974;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;MQRankSum=-1.477;QD=6.43;ReadPosRankSum=1.681;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:54:477,54,0 chrVII 20063 . A T 1099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=80;Dels=0.00;FS=5.229;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=45.12;MQ0=0;MQRankSum=-0.130;QD=13.74;ReadPosRankSum=1.646;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1132,123,0 chrVII 20069 . A T 1109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=5.855;HaplotypeScore=3.3655;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;MQRankSum=0.877;QD=14.40;ReadPosRankSum=0.517;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1142,120,0 chrVII 20193 . G C 2865 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=22.04;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,126:130:99:2898,324,0 chrVII 20257 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=22.31;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2955,324,0 chrVII 20512 . A G 4028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=209;Dels=0.01;FS=0.000;HaplotypeScore=12.9406;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-1.715;QD=19.27;ReadPosRankSum=1.715;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,203:206:99:4028,456,0 chrVII 20521 . G A 4135.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.4199;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=19.78;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4135,465,0 chrVII 20576 . T A 2694 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=105.0990;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=16.04;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2727,294,0 chrVII 20580 . T A 287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=153;Dels=0.00;FS=3.965;HaplotypeScore=106.3009;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=1.299;QD=1.88;ReadPosRankSum=1.687;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:39:320,39,0 chrVII 20663 . T C 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=110;Dels=0.01;FS=3.032;HaplotypeScore=16.4612;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;MQRankSum=0.689;QD=21.47;ReadPosRankSum=2.405;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2395,273,0 chrVII 20692 . A G 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;MQRankSum=0.029;QD=19.67;ReadPosRankSum=1.703;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2413,282,0 chrVII 20726 . T G 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=4.234;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;MQRankSum=1.550;QD=21.74;ReadPosRankSum=1.033;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2533,291,0 chrVII 20736 . T C 2622 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;QD=21.85;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2655,303,0 chrVII 20785 . C T 2382 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=21.27;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2415,267,0 chrVII 20839 . T C 1477 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.3032;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=13.93;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1510,174,0 chrVII 20894 . G C 1624 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.33;MQ0=0;QD=13.42;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1657,189,0 chrVII 20917 . T C 228 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.623;DP=114;Dels=0.00;FS=24.734;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.84;MQ0=0;MQRankSum=1.990;QD=2.00;ReadPosRankSum=-6.769;SB=3.00 GT:AD:DP:GQ:PL 1/1:91,22:114:30:261,30,0 chrVII 20920 . A T 225.01 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.55;MQ0=0;QD=2.03;SB=-5.002e+01 GT:AD:DP:GQ:PL 1/1:0,20:111:27:258,27,0 chrVII 20931 . G A 1454 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=12.87;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1487,165,0 chrVII 20940 . G A 1266 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=12.66;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1299,144,0 chrVII 20941 . A G 1239 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=0;QD=12.27;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1272,150,0 chrVII 20962 . T C 1032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.48;MQ0=0;MQRankSum=-1.228;QD=10.02;ReadPosRankSum=1.698;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1065,123,0 chrVII 20973 . G T 1353 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=40.79;MQ0=0;QD=11.66;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1386,159,0 chrVII 21740 . G A 6651.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=19.0796;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,268:273:99:6651,715,0 chrVII 22104 . C T 3203 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.8881;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.94;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3236,348,0 chrVII 22601 . C T 5302.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=22.8261;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.78;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5302,568,0 chrVII 24468 . T C 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=15.3289;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.031;QD=21.58;ReadPosRankSum=1.713;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,177:182:99:3927,447,0 chrVII 25442 . C T 3073 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3106,333,0 chrVII 25544 . A C 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=88;Dels=0.00;FS=2.837;HaplotypeScore=66.7022;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.658;QD=21.36;ReadPosRankSum=2.394;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1913,213,0 chrVII 26522 . A G 3299.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3299,369,0 chrVII 27002 . A G 3728.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.30;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3728,438,0 chrVII 28256 . G A 2229 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.23;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2262,246,0 chrVII 28634 . T G 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=139;Dels=0.00;FS=3.238;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.493;QD=22.45;ReadPosRankSum=1.682;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:3154,357,0 chrVII 28799 . C G 2672 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.0200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2705,300,0 chrVII 29398 . C T 2816 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.9046;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.71;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2849,309,0 chrVII 29745 . A T 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.145;DP=147;Dels=0.00;FS=12.848;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.923;QD=20.47;ReadPosRankSum=3.314;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:4,143:147:99:3042,333,0 chrVII 30045 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3103,336,0 chrVII 30120 . A T 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2971;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.152;QD=23.46;ReadPosRankSum=1.671;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2731,294,0 chrVII 30150 . A T 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.501;QD=19.62;ReadPosRankSum=1.675;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2525,279,0 chrVII 30161 . C A 2775 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.68;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2808,294,0 chrVII 30324 . T C 2122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.875;QD=21.88;ReadPosRankSum=1.696;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2155,249,0 chrVII 30348 . C G 2470 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.05;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2503,282,0 chrVII 30426 . T C 2222 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.16;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2255,258,0 chrVII 30743 . A G 4085.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=172;Dels=0.00;FS=3.192;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.165;QD=23.75;ReadPosRankSum=1.692;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4085,453,0 chrVII 30798 . A G 4220.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=3.303;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.715;QD=22.81;ReadPosRankSum=1.713;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4220,489,0 chrVII 30845 . T C 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=180;Dels=0.00;FS=7.026;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.048;QD=22.57;ReadPosRankSum=2.299;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:4062,447,0 chrVII 30879 . G A 3535.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3535,378,0 chrVII 31179 . A C 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=3.108;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.065;QD=22.61;ReadPosRankSum=1.552;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3086,345,0 chrVII 31305 . T A 2489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.588;DP=121;Dels=0.00;FS=4.457;HaplotypeScore=7.5088;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.703;QD=20.57;ReadPosRankSum=1.357;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2522,279,0 chrVII 31386 . A T 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=106;Dels=0.00;FS=3.093;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.405;QD=22.20;ReadPosRankSum=1.699;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2386,255,0 chrVII 31616 . G A 3289.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4744;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.18;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3289,348,0 chrVII 32037 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.8245;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4010,429,0 chrVII 32155 . C A 4579.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.1204;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.60;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4579,495,0 chrVII 32626 . T A 3856.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.09;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3856,417,0 chrVII 32862 . C T 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.928;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.0447;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.782;QD=20.24;ReadPosRankSum=-1.720;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2482,267,0 chrVII 32871 . G T 2118 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.10;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2151,231,0 chrVII 32898 . T C 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.464;QD=18.82;ReadPosRankSum=1.701;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2160,246,0 chrVII 33274 . C T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.94;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3250,351,0 chrVII 33441 . G A 3537.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.23;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3537,375,0 chrVII 33654 . G A 4734.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=25.45;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4734,505,0 chrVII 33744 . A G 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=116;Dels=0.00;FS=2.965;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.644;QD=22.16;ReadPosRankSum=2.407;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2603,294,0 chrVII 33854 . C G 2566 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=20.20;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2599,297,0 chrVII 33860 . C T 2533 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=20.10;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2566,282,0 chrVII 33877 . T C 2213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=5.423;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=0.483;QD=18.14;ReadPosRankSum=1.704;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2246,258,0 chrVII 33887 . A C 2306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=0.722;QD=19.06;ReadPosRankSum=1.703;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2339,264,0 chrVII 34019 . C T 2795 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=25.18;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2828,306,0 chrVII 34081 . T C 2083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-1.386;QD=22.40;ReadPosRankSum=1.655;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:1,89:93:99:2116,240,0 chrVII 34292 . C G 2833 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.53;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2866,327,0 chrVII 34297 . A G 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=7.510;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-0.476;QD=20.36;ReadPosRankSum=2.378;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:2843,324,0 chrVII 34555 . C G 3818.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=24.01;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3818,426,0 chrVII 34666 . T C 3201 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.2626;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.23;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3234,366,0 chrVII 34691 . T C 2536 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.21;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2569,285,0 chrVII 34702 . C A 2243 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=18.85;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2276,240,0 chrVII 34790 . C T 2319 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=16.33;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:2352,261,0 chrVII 34805 . G A 2307 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=16.84;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2340,249,0 chrVII 34992 . G A 2587 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.10;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2620,276,0 chrVII 35217 . A G 2101 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.20;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2134,246,0 chrVII 35336 . C A 2920 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.81;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2953,318,0 chrVII 35451 . C G 2203 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.44;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2236,249,0 chrVII 35525 . A G 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.000;QD=21.19;ReadPosRankSum=1.666;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2237,252,0 chrVII 35543 . T C 2326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=4.771;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.272;QD=22.80;ReadPosRankSum=1.698;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2359,258,0 chrVII 35796 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.4829;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=24.64;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3450,369,0 chrVII 35877 . A G 3333.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.93;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3333,381,0 chrVII 35919 . A T 4098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.9587;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.254;QD=24.11;ReadPosRankSum=2.261;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4098,438,0 chrVII 36013 . A G 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=3.730;HaplotypeScore=6.6564;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.818;QD=21.24;ReadPosRankSum=1.708;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3092,348,0 chrVII 36018 . C G 2731 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.65;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2764,321,0 chrVII 36208 . T A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.1838;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.05;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3665,393,0 chrVII 36691 . T C 2990 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.67;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3023,333,0 chrVII 36711 . A G 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-0.640;QD=21.90;ReadPosRankSum=2.347;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3186,360,0 chrVII 36979 . A C 2835 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.68;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2868,324,0 chrVII 37058 . G A 2724 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.1205;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.28;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2757,303,0 chrVII 37094 . T C 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=136;Dels=0.00;FS=3.034;HaplotypeScore=8.7422;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.003;QD=22.03;ReadPosRankSum=2.413;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3029,339,0 chrVII 37198 . A C 3984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=174;Dels=0.00;FS=7.822;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.953;QD=22.90;ReadPosRankSum=2.365;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3984,450,0 chrVII 37220 . C T 3405.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=20.89;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3405,369,0 chrVII 37229 . G A 3184 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=20.81;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3217,336,0 chrVII 37436 . A C 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.307;DP=140;Dels=0.00;FS=5.202;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-1.002;QD=21.76;ReadPosRankSum=3.395;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:4,135:140:99:3079,345,0 chrVII 37569 . T A 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.5204;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.996;QD=20.47;ReadPosRankSum=1.965;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2837,300,0 chrVII 37581 . T C 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=133;Dels=0.00;FS=5.994;HaplotypeScore=5.0566;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.295;QD=19.50;ReadPosRankSum=2.856;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2627,303,0 chrVII 37655 . A T 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=3.669;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.039;QD=22.17;ReadPosRankSum=1.706;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3026,324,0 chrVII 38036 . C T 3473.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9011;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.00;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3473,381,0 chrVII 38079 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.6319;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.59;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3303,366,0 chrVII 38202 . A G 3699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=163;Dels=0.00;FS=7.024;HaplotypeScore=16.4918;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.359;QD=22.69;ReadPosRankSum=2.419;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:3699,417,0 chrVII 38265 . T C 3757.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.0510;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.05;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3757,423,0 chrVII 38616 . C T 2992 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.57;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3025,315,0 chrVII 38736 . T C 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.012;QD=21.86;ReadPosRankSum=1.704;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2766,312,0 chrVII 38775 . A G 2359 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.16;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2392,276,0 chrVII 38848 . T A 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=3.330;HaplotypeScore=5.7194;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.268;QD=22.88;ReadPosRankSum=1.678;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2939,324,0 chrVII 38880 . A G 3341.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.53;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3341,372,0 chrVII 38993 . A G 4721.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.8526;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.37;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4721,516,0 chrVII 39412 . C T 3523.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.72;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3523,390,0 chrVII 39454 . T C 4266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.0920;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.571;QD=21.99;ReadPosRankSum=1.714;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4266,480,0 chrVII 39493 . C T 4197.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.6500;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.63;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4197,465,0 chrVII 39549 . G A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.80;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3760,402,0 chrVII 39775 . A G 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=168;Dels=0.00;FS=6.260;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=-0.703;QD=19.76;ReadPosRankSum=2.390;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3319,375,0 chrVII 39784 . C T 3365.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=20.27;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3365,363,0 chrVII 39973 . T C 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=168;Dels=0.00;FS=7.589;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-1.037;QD=21.87;ReadPosRankSum=2.420;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3674,408,0 chrVII 39988 . G A 3447.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=21.96;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3447,363,0 chrVII 39991 . C T 3305.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=20.53;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3305,357,0 chrVII 40063 . C T 3978.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.96;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3978,426,0 chrVII 40138 . C T 3798.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3798,414,0 chrVII 40507 . C T 4051.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.6596;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.55;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4051,432,0 chrVII 40984 . T C 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.043;QD=21.44;ReadPosRankSum=1.656;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3881,447,0 chrVII 41032 . C T 3849.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=21.75;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3849,406,0 chrVII 41041 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.03;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3702,408,0 chrVII 41301 . G A 2872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.323;DP=128;Dels=0.00;FS=3.634;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.205;QD=22.44;ReadPosRankSum=0.505;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2905,302,0 chrVII 41417 . A C 3478.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.01;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3478,390,0 chrVII 41439 . C T 3982.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.63;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3982,429,0 chrVII 41491 . T C 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=159;Dels=0.00;FS=2.830;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=0.533;QD=21.68;ReadPosRankSum=2.357;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3447,390,0 chrVII 41564 . G A 4033.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4033,432,0 chrVII 41998 . G A 5172.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.1114;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.39;SB=-3.039e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5172,553,0 chrVII 42016 . A G 4581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.379;DP=214;Dels=0.00;FS=12.837;HaplotypeScore=12.2303;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=1.977;QD=21.41;ReadPosRankSum=3.403;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:4,210:214:99:4581,513,0 chrVII 42721 . G A 3613.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.09;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3613,396,0 chrVII 42910 . T C 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.1178;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.000;QD=22.09;ReadPosRankSum=1.707;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3104,360,0 chrVII 43159 . T C 1219 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1252,150,0 chrVII 43204 . A T 329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.037;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.157;QD=12.19;ReadPosRankSum=2.246;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,25:27:39:362,39,0 chrVII 43308 . T G 1912 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.235;QD=23.60;ReadPosRankSum=1.689;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1945,219,0 chrVII 43400 . A G 2298 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.71;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,90:93:99:2331,261,0 chrVII 43798 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.9111;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.85;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3163,333,0 chrVII 43914 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3076,327,0 chrVII 44099 . C T 3521.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.4361;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3521,381,0 chrVII 44460 . T C 1189 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1222,132,0 chrVII 44898 . C T 4604.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=15.5000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4604,492,0 chrVII 45399 . G A 3005 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.0359;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=21.01;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3038,333,0 chrVII 45537 . C A 3685.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.09;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3685,390,0 chrVII 45639 . C T 4425.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.92;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4425,492,0 chrVII 45669 . A T 4533.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.5039;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=24.77;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4533,489,0 chrVII 45694 . A G 4080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.304;DP=181;Dels=0.00;FS=9.018;HaplotypeScore=9.1047;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.102;QD=22.54;ReadPosRankSum=3.304;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:4,176:181:99:4080,459,0 chrVII 45723 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.81;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3468,384,0 chrVII 45763 . A G 3709.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0428;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.82;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3709,411,0 chrVII 46050 . A G 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=142;Dels=0.00;FS=5.553;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.213;QD=22.54;ReadPosRankSum=2.866;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3234,366,0 chrVII 46230 . T C 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=110;Dels=0.00;FS=3.050;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.501;QD=22.85;ReadPosRankSum=2.405;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2546,294,0 chrVII 46296 . T C 2908 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.45;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2941,327,0 chrVII 47302 . T C 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.557;QD=23.50;ReadPosRankSum=1.703;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2877,321,0 chrVII 47451 . A T 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=165;Dels=0.00;FS=5.073;HaplotypeScore=13.5653;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.317;QD=23.44;ReadPosRankSum=1.584;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3867,420,0 chrVII 47512 . T C 5224.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=11.6265;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.75;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5224,588,0 chrVII 47568 . G A 3647.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.2207;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.37;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3647,390,0 chrVII 47968 . A G 4602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=200;Dels=0.00;FS=3.946;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.060;QD=23.01;ReadPosRankSum=1.714;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:1,195:200:99:4602,537,0 chrVII 47998 . A G 5272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=228;Dels=0.00;FS=3.941;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.881;QD=23.12;ReadPosRankSum=1.671;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:5272,600,0 chrVII 48338 . T C 3042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=4.180;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.457;QD=20.84;ReadPosRankSum=1.708;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3075,342,0 chrVII 48487 . A C 2848 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.25;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2881,333,0 chrVII 48835 . A T 5024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.227;DP=211;Dels=0.00;FS=8.638;HaplotypeScore=18.3733;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.731;QD=23.81;ReadPosRankSum=2.356;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:5024,538,0 chrVII 49026 . A T 5528.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=15.5624;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.03;SB=-2.809e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5528,589,0 chrVII 49323 . C T 3114 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.0180;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.73;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3147,333,0 chrVII 50143 . T A 2655 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2688,288,0 chrVII 50279 . C T 3137 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3170,339,0 chrVII 50656 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.05;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3282,354,0 chrVII 51531 . T C 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=146;Dels=0.00;FS=2.722;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.305;QD=22.83;ReadPosRankSum=2.416;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3333,384,0 chrVII 51759 . A G 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.5123;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.586;QD=21.36;ReadPosRankSum=1.681;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2960,333,0 chrVII 53259 . C T 5483.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5483,586,0 chrVII 54056 . C T 5897.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:5897,657,0 chrVII 54122 . G A 4390.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.51;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4390,471,0 chrVII 54197 . A G 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=134;Dels=0.00;FS=3.008;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.725;QD=22.19;ReadPosRankSum=2.358;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3007,336,0 chrVII 54246 . T G 2558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=120;Dels=0.00;FS=3.559;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.703;QD=21.32;ReadPosRankSum=1.703;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2591,294,0 chrVII 54929 . G A 5419.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.3401;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5419,577,0 chrVII 55015 . G T 4209.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.0319;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.04;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4209,450,0 chrVII 55734 . C T 7320.01 PASS AC=2;AF=1.00;AN=2;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=30.0647;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.47;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:0,338:341:99:7320,787,0 chrVII 55935 . C G 3920.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.9518;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.66;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,175:181:99:3920,432,0 chrVII 56280 . G T 3021 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3054,333,0 chrVII 57351 . T C 6127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=293;Dels=0.00;FS=12.255;HaplotypeScore=27.1994;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.860;QD=20.91;ReadPosRankSum=2.880;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:3,290:293:99:6127,684,0 chrVII 57855 . T C 5275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=243;Dels=0.00;FS=3.385;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.117;QD=21.71;ReadPosRankSum=1.718;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:1,241:243:99:5275,606,0 chrVII 58290 . T C 4440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=208;Dels=0.00;FS=4.709;HaplotypeScore=12.2031;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.360;QD=21.35;ReadPosRankSum=1.682;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4440,504,0 chrVII 58485 . A G 3634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=164;Dels=0.00;FS=3.575;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.479;QD=22.16;ReadPosRankSum=1.711;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3634,411,0 chrVII 59068 . A T 3157 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.66;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3190,348,0 chrVII 59166 . G T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3445;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.50;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3430,366,0 chrVII 59263 . C T 3826.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.34;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3826,405,0 chrVII 59379 . T C 2955 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.27;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2988,336,0 chrVII 59601 . A G 1832 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.34;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1865,207,0 chrVII 59721 . T C 1776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.845;QD=21.66;ReadPosRankSum=1.690;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1809,204,0 chrVII 59748 . T C 1601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=79;Dels=0.00;FS=6.306;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.300;QD=20.27;ReadPosRankSum=0.142;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:2,76:79:99:1634,183,0 chrVII 59754 . T C 1630 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.64;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1663,189,0 chrVII 59802 . A G 1390 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.44;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1423,162,0 chrVII 60011 . T C 2120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=1.466;QD=23.04;ReadPosRankSum=1.656;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2153,240,0 chrVII 60110 . G A 2233 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.3604;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.51;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2266,240,0 chrVII 60120 . C T 2264 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.87;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2297,252,0 chrVII 60240 . C G 2563 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.91;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2596,303,0 chrVII 60270 . C T 2164 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.22;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2197,246,0 chrVII 60280 . C T 2125 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.0371;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=21.46;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2158,234,0 chrVII 60660 . A G 2671 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.85;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2704,306,0 chrVII 60719 . G A 2655 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=22.12;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2688,285,0 chrVII 60729 . T C 2343 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.36;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2376,267,0 chrVII 60732 . C T 2420 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=19.06;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2453,261,0 chrVII 61140 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3262,366,0 chrVII 61349 . G A 3564.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3564,384,0 chrVII 61536 . T C 2691 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.08;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2724,315,0 chrVII 61926 . T C 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=3.364;HaplotypeScore=6.6104;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-1.371;QD=20.28;ReadPosRankSum=1.702;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2385,264,0 chrVII 61936 . C T 2089 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=19.17;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2122,234,0 chrVII 62065 . T C 2881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.644;DP=130;Dels=0.00;FS=4.939;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.622;QD=22.16;ReadPosRankSum=3.511;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:5,125:130:99:2914,333,0 chrVII 62160 . T C 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.328;DP=123;Dels=0.00;FS=5.287;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.732;QD=23.37;ReadPosRankSum=3.213;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:4,118:123:99:2907,321,0 chrVII 62447 . G A 3395.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.53;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3395,354,0 chrVII 62492 . T C 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.6374;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.778;QD=24.24;ReadPosRankSum=1.707;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3370,387,0 chrVII 62921 . A G 2393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.096;QD=21.95;ReadPosRankSum=1.700;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2426,273,0 chrVII 63294 . T C 4800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-0.227;QD=24.12;ReadPosRankSum=1.680;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4800,543,0 chrVII 63922 . G A 3275.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.91;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3275,345,0 chrVII 64305 . A G 1951 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1984,225,0 chrVII 64794 . A G 3607.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.8786;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.12;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3607,405,0 chrVII 64837 . G A 3142 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.82;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3175,348,0 chrVII 65202 . A C 1790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=81;Dels=0.00;FS=9.702;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.263;QD=22.10;ReadPosRankSum=2.913;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1823,207,0 chrVII 65487 . T C 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.746;DP=115;Dels=0.00;FS=2.590;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.377;QD=20.67;ReadPosRankSum=2.922;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2410,267,0 chrVII 65502 . T A 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.641;QD=21.76;ReadPosRankSum=2.408;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2601,282,0 chrVII 65688 . G A 4634.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.14;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4634,495,0 chrVII 65790 . A G 2579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=147;Dels=0.00;FS=6.231;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-1.028;QD=17.54;ReadPosRankSum=2.416;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2612,291,0 chrVII 65798 . C T 2525 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=16.95;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2558,279,0 chrVII 66126 . T G 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=6.188;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.624;QD=23.95;ReadPosRankSum=2.412;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3194,360,0 chrVII 66234 . A G 2777 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.3196;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.04;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2810,324,0 chrVII 66390 . T C 4086.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4086,453,0 chrVII 66605 . G A 4246.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4246,456,0 chrVII 66712 . G C 3284.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.40;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3284,366,0 chrVII 67009 . G A 4861.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.13;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4861,514,0 chrVII 67253 . T C 3882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=3.797;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.380;QD=20.76;ReadPosRankSum=1.695;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3882,450,0 chrVII 67526 . C T 6068.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.28;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6068,643,0 chrVII 67624 . A G 5039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.257;QD=23.33;ReadPosRankSum=1.684;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:5039,585,0 chrVII 68009 . T A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.60;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3563,384,0 chrVII 68056 . A G 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=0.044;QD=21.76;ReadPosRankSum=1.710;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3395,378,0 chrVII 68080 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.70;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3185,336,0 chrVII 68098 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.67;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3844,420,0 chrVII 68203 . T C 5047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-0.050;QD=19.34;ReadPosRankSum=2.965;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:3,258:261:99:5047,579,0 chrVII 68211 . G A 5445.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.17;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:5445,583,0 chrVII 68385 . G A 7040.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=10.5549;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.42;SB=-3.107e+03 GT:AD:DP:GQ:PL 1/1:0,311:314:99:7040,748,0 chrVII 68413 . G A 7146.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.26;SB=-2.922e+03 GT:AD:DP:GQ:PL 1/1:0,320:321:99:7146,769,0 chrVII 68542 . T C 5198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.820;DP=233;Dels=0.00;FS=7.968;HaplotypeScore=8.1658;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.550;QD=22.31;ReadPosRankSum=2.397;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:2,230:233:99:5198,560,0 chrVII 68689 . G A 4259.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=19.7832;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.15;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4259,459,0 chrVII 68806 . T C 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.539;DP=179;Dels=0.00;FS=3.338;HaplotypeScore=9.8267;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.345;QD=21.22;ReadPosRankSum=1.693;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3798,435,0 chrVII 68875 . A G 5105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=214;Dels=0.00;FS=3.093;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.768;QD=23.86;ReadPosRankSum=1.716;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:5105,573,0 chrVII 69214 . A T 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=1.070;QD=24.13;ReadPosRankSum=1.707;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3330,357,0 chrVII 69249 . G T 2868 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.24;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2901,321,0 chrVII 69315 . T C 2194 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=16.25;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2227,255,0 chrVII 69481 . T C 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=134;Dels=0.00;FS=2.549;HaplotypeScore=9.6475;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.362;QD=20.82;ReadPosRankSum=2.947;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:3,128:134:99:2823,324,0 chrVII 69622 . T C 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=119;Dels=0.00;FS=2.793;HaplotypeScore=8.6964;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.506;QD=23.17;ReadPosRankSum=2.408;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2790,312,0 chrVII 70828 . A G 3180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.676;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.111;QD=22.55;ReadPosRankSum=-1.020;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3213,372,0 chrVII 71024 . A G 3840.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.85;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3840,438,0 chrVII 71083 . T C 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=3.598;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=1.140;QD=22.12;ReadPosRankSum=1.622;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3495,396,0 chrVII 71095 . T C 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=158;Dels=0.00;FS=12.106;HaplotypeScore=2.6711;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.255;QD=21.97;ReadPosRankSum=2.956;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3472,393,0 chrVII 71125 . C T 3871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=3.834;HaplotypeScore=14.0614;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.475;QD=23.18;ReadPosRankSum=-0.385;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,161:167:99:3871,423,0 chrVII 71209 . C T 4748.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.6703;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.50;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4748,513,0 chrVII 71410 . G A 4277.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.2344;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.71;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4277,454,0 chrVII 72119 . G A 3153 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3186,339,0 chrVII 72270 . C A 3746.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3746,394,0 chrVII 72582 . G A 3028 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3061,336,0 chrVII 72738 . A G 3275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=136;Dels=0.00;FS=5.208;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.350;QD=24.08;ReadPosRankSum=1.707;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3275,366,0 chrVII 72788 . G A 3031 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=14.2519;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.48;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3064,351,0 chrVII 72874 . C T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.65;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3831,414,0 chrVII 73077 . G A 4690.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.8878;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.45;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4690,519,0 chrVII 73206 . C T 4903.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=7.6972;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.89;SB=-2.932e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4903,531,0 chrVII 73220 . C T 4732.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=5.0280;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.51;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4732,510,0 chrVII 73493 . C G 4090.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.9590;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.41;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,187:191:99:4090,453,0 chrVII 73615 . A G 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.347;DP=183;Dels=0.00;FS=7.108;HaplotypeScore=18.9308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.197;QD=19.24;ReadPosRankSum=4.478;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:7,176:183:99:3521,402,0 chrVII 74322 . A G 2689 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2722,297,0 chrVII 74365 . C T 2606 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.48;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2639,291,0 chrVII 74414 . G A 1971 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=19.91;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2004,225,0 chrVII 74421 . A G 1993 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=8.819;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-1.811;QD=19.16;ReadPosRankSum=2.402;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2026,228,0 chrVII 74423 . G T 2031 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=19.34;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2064,225,0 chrVII 74453 . T G 1907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=-1.362;QD=18.51;ReadPosRankSum=1.665;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1940,213,0 chrVII 74547 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=154;Dels=0.00;FS=4.094;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.607;QD=23.59;ReadPosRankSum=1.687;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3633,405,0 chrVII 74670 . A G 3655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.738;DP=165;Dels=0.00;FS=9.683;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.909;QD=22.15;ReadPosRankSum=2.909;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3655,420,0 chrVII 74769 . G A 4227.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.02;FS=0.000;HaplotypeScore=16.7209;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=22.13;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4227,453,0 chrVII 74942 . T G 8640.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.742;DP=371;Dels=0.00;FS=4.676;HaplotypeScore=25.4345;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.365;QD=23.29;ReadPosRankSum=3.763;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:5,364:371:99:8640,972,0 chrVII 74983 . A G 7728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=339;Dels=0.00;FS=10.019;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.258;QD=22.80;ReadPosRankSum=2.377;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:2,336:339:99:7728,914,0 chrVII 75107 . G A 8338.01 filter AC=2;AF=1.00;AN=2;DP=376;Dels=0.00;FS=0.000;HaplotypeScore=19.4782;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.18;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,375:376:99:8338,895,0 chrVII 75209 . T C 5737.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.01;FS=0.000;HaplotypeScore=8.6249;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.13;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,275:282:99:5737,666,0 chrVII 75210 . A G 5860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.176;DP=280;Dels=0.00;FS=10.280;HaplotypeScore=7.0476;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=0.540;QD=20.93;ReadPosRankSum=4.124;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:6,270:280:99:5860,675,0 chrVII 75280 . T C 4530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.8397;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.717;QD=20.97;ReadPosRankSum=1.684;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4530,510,0 chrVII 75488 . G T 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;DP=226;Dels=0.00;FS=26.126;HaplotypeScore=946.3913;MLEAC=1;MLEAF=0.500;MQ=50.52;MQ0=0;MQRankSum=-0.460;QD=0.08;ReadPosRankSum=-4.585;SB=-1.350e+02 GT:AD:DP:GQ:PL 0/1:215,10:226:48:48,0,350 chrVII 75494 . G T 927 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=10.9687;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=3.75;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:960,111,0 chrVII 75619 . G A 5895.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=24.46;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5895,634,0 chrVII 75625 . A G 5485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=244;Dels=0.00;FS=2.560;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;MQRankSum=-1.351;QD=22.48;ReadPosRankSum=2.963;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:3,240:244:99:5485,624,0 chrVII 75663 . T C 4262.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;QD=22.91;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4262,480,0 chrVII 76021 . A T 4909.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=12.6384;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=20.98;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4909,520,0 chrVII 76069 . G T 5683.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=16.9802;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=22.64;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5683,627,0 chrVII 76165 . C A 6947.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=16.3244;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;QD=23.96;SB=-3.657e+03 GT:AD:DP:GQ:PL 1/1:0,288:290:99:6947,745,0 chrVII 76241 . A G 4503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=240;Dels=0.00;FS=5.722;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=2.025;QD=18.76;ReadPosRankSum=2.895;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:3,237:240:99:4503,519,0 chrVII 76247 . A G 4671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=250;Dels=0.00;FS=5.582;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=0.663;QD=18.68;ReadPosRankSum=2.866;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:3,245:250:99:4671,525,0 chrVII 76663 . G C 2539 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=13.0094;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=18.95;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2572,300,0 chrVII 76882 . T C 4027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.2329;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=23.83;ReadPosRankSum=1.691;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:4027,453,0 chrVII 76989 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=169;Dels=0.00;FS=3.088;HaplotypeScore=15.7711;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-1.712;QD=20.99;ReadPosRankSum=1.712;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3547,402,0 chrVII 77025 . T C 3946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=3.107;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.343;QD=21.68;ReadPosRankSum=1.713;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3946,444,0 chrVII 77052 . C T 4533.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.78;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4533,498,0 chrVII 77889 . C G 2792 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.9986;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=20.99;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2825,327,0 chrVII 77975 . A G 1543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DP=86;Dels=0.00;FS=4.030;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-1.208;QD=17.94;ReadPosRankSum=-0.685;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1576,183,0 chrVII 77983 . T C 1528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=0.448;QD=17.17;ReadPosRankSum=1.693;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1561,174,0 chrVII 78029 . A G 2536 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.13;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2569,288,0 chrVII 78859 . A G 1773 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.304;QD=21.89;ReadPosRankSum=1.689;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1806,201,0 chrVII 79107 . T C 2283 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2316,267,0 chrVII 79218 . G A 1787 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1820,210,0 chrVII 80122 . T C 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=117;Dels=0.00;FS=7.111;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.845;QD=19.89;ReadPosRankSum=2.407;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:2,113:117:99:2360,264,0 chrVII 80138 . A G 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.376;DP=110;Dels=0.00;FS=8.353;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.024;QD=20.23;ReadPosRankSum=3.280;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:4,105:110:99:2258,249,0 chrVII 80380 . G C 1868 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.24;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1901,213,0 chrVII 80643 . T C 976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=13.4446;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.027;QD=17.75;ReadPosRankSum=1.668;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1009,117,0 chrVII 80855 . T A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=25.64;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3436,369,0 chrVII 81094 . T C 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=193;Dels=0.00;FS=2.828;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.851;QD=21.30;ReadPosRankSum=2.424;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4110,462,0 chrVII 81306 . T A 5202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=18.9188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.550;QD=20.81;ReadPosRankSum=1.718;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:1,249:250:99:5202,567,0 chrVII 82445 . G T 4446.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.84;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4446,477,0 chrVII 82592 . G A 4278.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.63;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4278,477,0 chrVII 82621 . G A 4885.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.60;SB=-2.781e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4885,517,0 chrVII 82858 . A G 4228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.389;QD=23.10;ReadPosRankSum=1.675;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4228,477,0 chrVII 82917 . C A 3796.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3796,420,0 chrVII 83138 . C T 5544.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.39;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5544,600,0 chrVII 83286 . A G 6188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=15.9479;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.006;QD=21.19;ReadPosRankSum=1.684;SB=-3.242e+03 GT:AD:DP:GQ:PL 1/1:1,291:292:99:6188,687,0 chrVII 83730 . C T 4365.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=16.2351;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.49;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:4365,495,0 chrVII 83793 . A G 3660.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.88;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3660,411,0 chrVII 84066 . C G 3427.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.47;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3427,381,0 chrVII 84425 . T G 3146 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.30;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3179,351,0 chrVII 84785 . A G 1059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.427;DP=70;Dels=0.00;FS=2.503;HaplotypeScore=10.5115;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=2.192;QD=15.13;ReadPosRankSum=2.104;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:3,66:70:99:1092,123,0 chrVII 84969 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.49;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2546,270,0 chrVII 85190 . A C 2869 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.5415;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.79;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2902,333,0 chrVII 86246 . A G 5634.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.4749;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.48;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5634,627,0 chrVII 86297 . C T 4757.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.52;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4757,519,0 chrVII 86321 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.21;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3576,402,0 chrVII 86411 . A C 4639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.968;DP=216;Dels=0.00;FS=2.576;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.009;QD=21.48;ReadPosRankSum=2.921;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:3,213:216:99:4639,534,0 chrVII 86432 . C T 4779.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.6185;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.02;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4779,531,0 chrVII 88664 . C T 2895 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.13;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2928,321,0 chrVII 88681 . A G 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=3.203;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.351;QD=20.51;ReadPosRankSum=1.707;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2904,321,0 chrVII 88763 . A G 3049 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.20;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3082,345,0 chrVII 88957 . A G 3292.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.09;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3292,369,0 chrVII 89034 . A G 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.769;QD=21.72;ReadPosRankSum=1.709;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3323,378,0 chrVII 90087 . G A 2177 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.66;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2210,246,0 chrVII 90290 . C T 3674.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.66;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3674,402,0 chrVII 90754 . A G 2400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=127;Dels=0.00;FS=3.714;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-1.596;QD=18.90;ReadPosRankSum=1.705;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2433,276,0 chrVII 90761 . T C 2269 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=19.07;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2302,261,0 chrVII 90775 . A C 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=3.395;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=0.059;QD=18.26;ReadPosRankSum=1.703;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2188,252,0 chrVII 90968 . G A 4500.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=25.14;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4500,480,0 chrVII 91031 . C T 5379.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=25.02;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5379,577,0 chrVII 91467 . G A 2705 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.92;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2738,297,0 chrVII 91652 . G T 3074 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.77;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3107,336,0 chrVII 91928 . C T 7688.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.72;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,310:311:99:7688,846,0 chrVII 91959 . A G 8097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.973;DP=336;Dels=0.00;FS=15.377;HaplotypeScore=15.8788;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.124;QD=24.10;ReadPosRankSum=2.943;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:3,331:336:99:8097,915,0 chrVII 92226 . A G 6577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=296;Dels=0.00;FS=2.555;HaplotypeScore=11.1672;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-1.661;QD=22.22;ReadPosRankSum=2.895;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:3,293:296:99:6577,726,0 chrVII 92327 . G A 4760.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4760,510,0 chrVII 92390 . A T 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.1411;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=0.439;QD=21.73;ReadPosRankSum=2.418;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3390,366,0 chrVII 92451 . C T 1616 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.1017;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=13.14;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1649,180,0 chrVII 92613 . A G 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=165;Dels=0.00;FS=4.798;HaplotypeScore=16.2046;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.671;QD=23.67;ReadPosRankSum=1.689;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,159:165:99:3906,438,0 chrVII 92721 . A G 5330.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.88;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5330,606,0 chrVII 92892 . T C 6080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.744;DP=279;Dels=0.00;FS=15.854;HaplotypeScore=25.8665;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.286;QD=21.79;ReadPosRankSum=3.800;SB=-3.336e+03 GT:AD:DP:GQ:PL 1/1:5,273:279:99:6080,711,0 chrVII 93270 . C T 5573.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-3.032e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5573,595,0 chrVII 93381 . T C 4488.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.25;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4488,510,0 chrVII 93397 . G A 4047.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.88;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4047,456,0 chrVII 93435 . C T 4095.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.38;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4095,438,0 chrVII 93622 . G A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.76;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3327,357,0 chrVII 94124 . G A 6081.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=7.4060;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.85;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:6081,661,0 chrVII 94586 . T C 2639 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.18;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2672,303,0 chrVII 94635 . A G 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=118;Dels=0.00;FS=3.559;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.352;QD=20.21;ReadPosRankSum=1.644;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2418,273,0 chrVII 94647 . A G 2387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=116;Dels=0.00;FS=3.455;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=1.027;QD=20.58;ReadPosRankSum=1.701;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,112:116:99:2420,270,0 chrVII 94727 . A G 3151 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.69;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3184,354,0 chrVII 94815 . C G 2636 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.1987;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.53;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,130:135:99:2669,306,0 chrVII 95005 . T A 3716.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.37;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3716,399,0 chrVII 95112 . A G 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.011;DP=151;Dels=0.00;FS=3.471;HaplotypeScore=6.3020;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.360;QD=21.90;ReadPosRankSum=1.267;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3307,360,0 chrVII 95325 . C T 2243 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.99;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2276,252,0 chrVII 95404 . G C 3605.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.92;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3605,399,0 chrVII 95977 . T A 4825.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.3175;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.87;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4825,519,0 chrVII 96070 . G A 6476.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.35;SB=-3.486e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:6476,688,0 chrVII 96337 . T C 5719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=298;Dels=0.00;FS=6.553;HaplotypeScore=19.8330;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.977;QD=19.19;ReadPosRankSum=2.433;SB=-3.500e+03 GT:AD:DP:GQ:PL 1/1:2,293:298:99:5719,645,0 chrVII 96763 . G A 4866.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.28;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4866,525,0 chrVII 96868 . T C 3805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=226;Dels=0.02;FS=7.673;HaplotypeScore=19.2297;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=0.492;QD=16.84;ReadPosRankSum=2.427;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:2,215:221:99:3805,429,0 chrVII 96869 . G A 3964.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.02;FS=0.000;HaplotypeScore=16.8637;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=17.62;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:3964,429,0 chrVII 97008 . C T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.75;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3306,357,0 chrVII 97411 . A G 3202 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=19.52;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3235,363,0 chrVII 97412 . C T 3193 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=19.59;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3226,351,0 chrVII 97436 . T C 3386.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=18.50;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3386,372,0 chrVII 98124 . G T 5755.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=25.2584;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.75;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:5755,633,0 chrVII 98387 . T G 5295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=251;Dels=0.00;FS=10.422;HaplotypeScore=19.0871;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-1.951;QD=21.10;ReadPosRankSum=2.899;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:3,245:251:99:5295,597,0 chrVII 98492 . C T 4362.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.29;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4362,483,0 chrVII 98734 . G C 2781 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2814,312,0 chrVII 99258 . A G 4355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.9961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.321;QD=24.33;ReadPosRankSum=1.713;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:4355,477,0 chrVII 99303 . T A 4244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=168;Dels=0.00;FS=5.854;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.247;QD=25.26;ReadPosRankSum=2.886;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:3,165:168:99:4244,453,0 chrVII 100016 . G A 2906 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.2589;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.85;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2939,315,0 chrVII 100110 . T C 2243 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.78;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2276,255,0 chrVII 100795 . G T 2806 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2839,312,0 chrVII 102510 . G A 1236 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.1017;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.18;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1269,153,0 chrVII 102955 . C G 3364.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.03;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3364,381,0 chrVII 104051 . G T 441.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.502;DP=132;Dels=0.00;FS=186.635;HaplotypeScore=14.0246;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=0.740;QD=3.34;ReadPosRankSum=-8.225;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,49:132:99:471,0,1221 chrVII 106751 . C T 3489.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.95;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3489,369,0 chrVII 107169 . C T 3753.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=18.7650;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.31;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3753,399,0 chrVII 107461 . A G 3885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.644;QD=21.00;ReadPosRankSum=2.423;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3885,441,0 chrVII 107775 . T C 2176 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2209,252,0 chrVII 108238 . G C 2612 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.32;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2645,303,0 chrVII 108343 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.699;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.670;QD=24.47;ReadPosRankSum=1.709;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3671,411,0 chrVII 108369 . A C 3109 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.37;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3142,360,0 chrVII 108374 . A C 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=138;Dels=0.00;FS=3.039;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.732;QD=22.09;ReadPosRankSum=2.413;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:3082,345,0 chrVII 108797 . G A 4937.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.6511;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.75;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:0,223:227:99:4937,543,0 chrVII 109424 . T G 5863.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.93;SB=-3.065e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5863,648,0 chrVII 109595 . G A 4485.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.6503;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.88;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4485,483,0 chrVII 109784 . G A 2780 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2813,318,0 chrVII 112158 . C T 2577 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2610,282,0 chrVII 112988 . T A 501.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.481;DP=447;Dels=0.00;FS=42.379;HaplotypeScore=10.4235;MLEAC=1;MLEAF=0.500;MQ=44.89;MQ0=0;MQRankSum=-8.242;QD=1.12;ReadPosRankSum=-13.138;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:352,95:447:99:531,0,2632 chrVII 113144 . G A 8537.01 filter AC=2;AF=1.00;AN=2;DP=422;Dels=0.00;FS=0.000;HaplotypeScore=17.0949;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=20.23;SB=-3.207e+03 GT:AD:DP:GQ:PL 1/1:0,422:422:99:8537,919,0 chrVII 113828 . A C 4255.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.01;FS=0.000;HaplotypeScore=9.8520;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4255,489,0 chrVII 114793 . C A 2996 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3029,333,0 chrVII 115872 . C A 2593 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2626,294,0 chrVII 116400 . A G 3874.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3874,435,0 chrVII 117199 . A C 4789.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.48;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4789,540,0 chrVII 117630 . A G 1904 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.89;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1937,216,0 chrVII 117810 . C T 1818 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1851,198,0 chrVII 117877 . A G 2438 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.90;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2471,276,0 chrVII 118403 . A T 4425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=20.4030;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.885;QD=19.32;ReadPosRankSum=1.655;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:4425,486,0 chrVII 118553 . G A 4928.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.36;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4928,523,0 chrVII 118820 . C T 3925.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=22.82;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3925,417,0 chrVII 118832 . T C 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=175;Dels=0.00;FS=2.966;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.235;QD=20.63;ReadPosRankSum=2.421;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:3611,405,0 chrVII 118901 . G A 4472.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.14;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4472,480,0 chrVII 120263 . T G 3680.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.2417;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.04;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,198:204:99:3680,423,0 chrVII 120506 . T C 2856 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2889,324,0 chrVII 120925 . A G 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.362;QD=22.04;ReadPosRankSum=1.689;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3549,408,0 chrVII 121124 . A C 3819.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.87;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3819,438,0 chrVII 121178 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.95;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3393,363,0 chrVII 121205 . T C 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=142;Dels=0.00;FS=6.034;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.421;QD=20.92;ReadPosRankSum=2.865;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:3,138:142:99:3004,330,0 chrVII 121223 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.11;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3516,375,0 chrVII 121481 . C T 5015.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.8032;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.23;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5015,538,0 chrVII 121525 . A G 4759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.328;DP=202;Dels=0.00;FS=17.897;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=1.153;QD=23.56;ReadPosRankSum=3.416;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:4,195:202:99:4759,522,0 chrVII 121543 . G A 4647.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=23.12;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4647,498,0 chrVII 121571 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=183;Dels=0.00;FS=2.664;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-0.412;QD=19.85;ReadPosRankSum=2.369;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:3632,411,0 chrVII 121591 . T C 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=-0.059;QD=18.00;ReadPosRankSum=1.712;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3219,363,0 chrVII 121616 . A G 3081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=178;Dels=0.00;FS=3.135;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=0.303;QD=17.31;ReadPosRankSum=1.713;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3114,354,0 chrVII 121627 . T C 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=3.509;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=0.793;QD=16.67;ReadPosRankSum=1.711;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:2800,318,0 chrVII 121697 . C T 4425.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.59;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4425,472,0 chrVII 121769 . G T 3910.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=22.09;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3910,420,0 chrVII 121802 . T G 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=156;Dels=0.00;FS=3.757;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=0.456;QD=22.06;ReadPosRankSum=1.709;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,151:156:99:3441,375,0 chrVII 121902 . A G 4071.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.38;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4071,465,0 chrVII 122191 . A T 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.921;DP=187;Dels=0.00;FS=3.009;HaplotypeScore=16.1256;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=-1.446;QD=22.47;ReadPosRankSum=0.825;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4202,443,0 chrVII 122243 . A T 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.3403;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.085;QD=22.20;ReadPosRankSum=1.713;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4084,459,0 chrVII 122377 . C T 2289 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;QD=18.17;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2322,243,0 chrVII 122389 . C T 2092 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.25;MQ0=0;QD=16.74;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2125,222,0 chrVII 122391 . C A 2038 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.84;MQ0=0;QD=16.05;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2071,222,0 chrVII 122394 . A T 2121 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;QD=15.71;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2154,234,0 chrVII 122405 . C A 1856 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=34.36;MQ0=0;QD=14.28;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:1889,204,0 chrVII 122407 . G A 1875 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=34.89;MQ0=0;QD=14.20;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1908,207,0 chrVII 122844 . A C 4594.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.41;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4594,519,0 chrVII 123330 . G C 4198.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.99;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4198,489,0 chrVII 123473 . A C 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=160;Dels=0.00;FS=3.413;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.469;QD=19.49;ReadPosRankSum=1.666;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3151,357,0 chrVII 123812 . C T 6440.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=14.2172;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.60;SB=-3.499e+03 GT:AD:DP:GQ:PL 1/1:0,284:285:99:6440,685,0 chrVII 124205 . C T 6169.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=24.6868;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.27;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,290:290:99:6169,678,0 chrVII 124460 . A G 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=125;Dels=0.00;FS=6.085;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.533;QD=21.58;ReadPosRankSum=2.877;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:3,120:125:99:2730,306,0 chrVII 124745 . T C 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.220;QD=16.70;ReadPosRankSum=1.485;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:3273,363,0 chrVII 124850 . T C 4482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=214;Dels=0.00;FS=4.533;HaplotypeScore=9.7830;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.919;QD=20.94;ReadPosRankSum=1.716;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4482,504,0 chrVII 124916 . A G 4970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=245;Dels=0.00;FS=2.561;HaplotypeScore=12.9741;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.576;QD=20.29;ReadPosRankSum=2.930;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:3,241:245:99:4970,564,0 chrVII 124970 . T C 4038.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.0889;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=24.04;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4038,456,0 chrVII 125002 . C T 3322.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.07;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,139:144:99:3322,357,0 chrVII 125066 . A G 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=168;Dels=0.00;FS=3.142;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=0.010;QD=20.88;ReadPosRankSum=1.691;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3508,405,0 chrVII 125090 . T C 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=178;Dels=0.00;FS=2.979;HaplotypeScore=9.5239;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-0.551;QD=21.67;ReadPosRankSum=2.422;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3857,426,0 chrVII 125177 . G A 4639.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.6195;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=24.16;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4639,490,0 chrVII 125195 . T C 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-0.077;QD=22.29;ReadPosRankSum=1.713;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:4056,453,0 chrVII 125277 . T C 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=173;Dels=0.00;FS=6.096;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=0.211;QD=21.07;ReadPosRankSum=2.866;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:99:3645,405,0 chrVII 125279 . G A 3716.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=21.60;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3716,405,0 chrVII 125306 . G A 4063.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.16;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4063,432,0 chrVII 125422 . A C 3557.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.37;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3557,399,0 chrVII 125994 . A G 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.165;QD=22.32;ReadPosRankSum=1.705;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2868,330,0 chrVII 126177 . G A 2825 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.35;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2858,300,0 chrVII 126460 . C A 2662 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.7250;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.13;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2695,291,0 chrVII 126466 . A G 2516 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.66;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2549,285,0 chrVII 126952 . G A 3909.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.0022;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.98;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3909,420,0 chrVII 126983 . G A 3774.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.01;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3774,408,0 chrVII 127409 . C T 7442.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=23.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-3.953e+03 GT:AD:DP:GQ:PL 1/1:0,306:306:99:7442,793,0 chrVII 127452 . A G 6543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.785;DP=301;Dels=0.00;FS=11.619;HaplotypeScore=13.7191;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.832;QD=21.74;ReadPosRankSum=3.821;SB=-3.531e+03 GT:AD:DP:GQ:PL 1/1:5,296:301:99:6543,738,0 chrVII 127838 . C T 2680 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.71;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2713,300,0 chrVII 127892 . G T 2817 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.84;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2850,318,0 chrVII 127940 . A G 3110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=3.878;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.477;QD=24.30;ReadPosRankSum=1.705;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3143,354,0 chrVII 128210 . T C 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=3.371;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.690;QD=22.40;ReadPosRankSum=1.690;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3651,414,0 chrVII 128483 . C T 4083.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.60;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4083,441,0 chrVII 128648 . T A 4610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=196;Dels=0.00;FS=3.019;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.241;QD=23.52;ReadPosRankSum=2.424;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4610,495,0 chrVII 129077 . A G 2596 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2629,297,0 chrVII 129417 . G C 4201.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.6372;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.28;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4201,462,0 chrVII 130374 . G A 2391 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.74;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2424,258,0 chrVII 130392 . G T 2362 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4883;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=20.72;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2395,267,0 chrVII 130449 . T C 2393 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.16;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2426,270,0 chrVII 130911 . T C 5546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=255;Dels=0.00;FS=9.348;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.116;QD=21.75;ReadPosRankSum=2.964;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:3,248:255:99:5546,639,0 chrVII 131010 . A G 4927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=13.1814;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.502;QD=21.80;ReadPosRankSum=1.671;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4927,567,0 chrVII 131145 . T C 5270.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.7681;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.52;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5270,588,0 chrVII 131213 . G A 3832.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.28;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3832,423,0 chrVII 131485 . A G 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=168;Dels=0.00;FS=8.741;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.333;QD=18.87;ReadPosRankSum=2.361;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3204,357,0 chrVII 131489 . A G 3273.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.60;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3273,363,0 chrVII 132076 . T A 4155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.575;QD=23.61;ReadPosRankSum=1.673;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4155,456,0 chrVII 132242 . C A 3669.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.7778;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.67;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3669,396,0 chrVII 132302 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=16.8877;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.462;QD=22.74;ReadPosRankSum=0.023;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3456,384,0 chrVII 132676 . C T 2704 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2737,300,0 chrVII 132872 . A G 2288 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2321,261,0 chrVII 133213 . C T 3587.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.14;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3587,396,0 chrVII 133650 . A C 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.0897;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.229;QD=20.11;ReadPosRankSum=2.361;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3378,372,0 chrVII 134263 . T C 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.839;QD=22.91;ReadPosRankSum=1.705;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2966,333,0 chrVII 134584 . C T 4071.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.9755;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.62;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4071,450,0 chrVII 135061 . T C 3838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=173;Dels=0.00;FS=3.112;HaplotypeScore=20.6197;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.121;QD=22.19;ReadPosRankSum=1.672;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3838,426,0 chrVII 135607 . G C 4030.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.44;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4030,465,0 chrVII 135724 . A G 2487 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.26;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2520,279,0 chrVII 136069 . C T 3551.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.99;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3551,384,0 chrVII 136222 . T C 6612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=19.8069;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.135;QD=23.36;ReadPosRankSum=1.720;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:1,281:283:99:6612,738,0 chrVII 136414 . T A 8148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=334;Dels=0.00;FS=3.464;HaplotypeScore=19.8758;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.337;QD=24.40;ReadPosRankSum=1.670;SB=-3.995e+03 GT:AD:DP:GQ:PL 1/1:1,332:334:99:8148,889,0 chrVII 136555 . G A 6081.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.12;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:6081,672,0 chrVII 136591 . T C 5694.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=17.8199;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.15;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5694,627,0 chrVII 137017 . A G 6208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=267;Dels=0.00;FS=4.485;HaplotypeScore=13.5814;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.302;QD=23.25;ReadPosRankSum=1.653;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:1,264:267:99:6208,705,0 chrVII 137665 . G A 3667.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=23.51;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3667,396,0 chrVII 137677 . C T 3578.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=23.08;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3578,384,0 chrVII 137888 . T C 3667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.773;DP=165;Dels=0.00;FS=6.030;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.233;QD=22.22;ReadPosRankSum=2.479;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3667,405,0 chrVII 139341 . A G 4718.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4718,531,0 chrVII 141046 . A G 3443.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.25;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3443,399,0 chrVII 141082 . A C 3833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=179;Dels=0.00;FS=6.712;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.021;QD=21.41;ReadPosRankSum=2.408;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:2,175:179:99:3833,444,0 chrVII 141144 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.6712;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.542;QD=20.92;ReadPosRankSum=1.711;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3452,387,0 chrVII 141286 . C G 3583.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,162:166:99:3583,414,0 chrVII 141849 . G T 4930.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.9229;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4930,526,0 chrVII 142482 . A G 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=134;Dels=0.00;FS=2.736;HaplotypeScore=11.2248;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.266;QD=20.79;ReadPosRankSum=2.413;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2819,318,0 chrVII 142636 . G A 3518.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.4741;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.55;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3518,390,0 chrVII 142669 . C T 2957 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.9528;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.45;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2990,318,0 chrVII 142677 . C T 2745 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.33;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2778,300,0 chrVII 142953 . G A 3633.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.59;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3633,390,0 chrVII 143828 . G A 3169 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.56;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3202,348,0 chrVII 144459 . A G 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=146;Dels=0.00;FS=8.064;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.446;QD=22.66;ReadPosRankSum=2.382;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3308,381,0 chrVII 144924 . C T 3649.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.2410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3649,399,0 chrVII 145173 . C T 2288 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2321,258,0 chrVII 145316 . C T 598 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:66:631,66,0 chrVII 145758 . G C 1315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.137;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.9222;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.402;QD=20.87;ReadPosRankSum=1.237;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1348,136,0 chrVII 147385 . G A 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=137;Dels=0.00;FS=3.482;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.707;QD=22.66;ReadPosRankSum=0.892;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3138,345,0 chrVII 147477 . T C 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=152;Dels=0.00;FS=3.020;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.350;QD=22.80;ReadPosRankSum=2.336;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3466,384,0 chrVII 148118 . T C 1871 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1904,219,0 chrVII 148376 . T C 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=131;Dels=0.00;FS=2.860;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.253;QD=23.45;ReadPosRankSum=2.393;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3105,348,0 chrVII 148710 . A G 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=155;Dels=0.00;FS=9.379;HaplotypeScore=11.3614;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=-0.388;QD=21.96;ReadPosRankSum=2.875;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:3,150:155:99:3404,387,0 chrVII 148767 . C T 3155 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.0046;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=21.17;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3188,342,0 chrVII 148771 . G T 3027 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=20.45;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3060,330,0 chrVII 148781 . C T 3044 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=19.64;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3077,333,0 chrVII 148854 . C G 2697 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.0894;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.28;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,129:133:99:2730,303,0 chrVII 148891 . C T 3089 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=23.05;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3122,333,0 chrVII 148906 . A C 2716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=144;Dels=0.00;FS=3.005;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-1.504;QD=18.86;ReadPosRankSum=2.329;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:2749,315,0 chrVII 148957 . G A 3778.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=23.18;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3778,405,0 chrVII 148993 . G C 3948.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=23.93;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3948,435,0 chrVII 149107 . T C 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=126;Dels=0.00;FS=3.010;HaplotypeScore=4.5268;MLEAC=2;MLEAF=1.00;MQ=44.11;MQ0=0;MQRankSum=-0.550;QD=20.25;ReadPosRankSum=1.705;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2584,288,0 chrVII 149109 . C G 2488 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.03;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;QD=20.23;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2521,285,0 chrVII 149219 . C G 2910 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=18.65;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2943,333,0 chrVII 149252 . G C 1661 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.1732;MLEAC=2;MLEAF=1.00;MQ=38.45;MQ0=0;QD=14.32;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:1694,192,0 chrVII 149262 . T A 1531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.678;DP=103;Dels=0.00;FS=2.272;HaplotypeScore=83.4206;MLEAC=2;MLEAF=1.00;MQ=31.99;MQ0=0;MQRankSum=0.023;QD=14.86;ReadPosRankSum=3.476;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:5,98:103:99:1564,145,0 chrVII 149279 . A T 1459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.4972;MLEAC=2;MLEAF=1.00;MQ=29.39;MQ0=0;MQRankSum=-0.661;QD=15.04;ReadPosRankSum=1.696;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1492,159,0 chrVII 149290 . T A 122.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.240;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1667;MLEAC=1;MLEAF=0.500;MQ=30.44;MQ0=0;MQRankSum=1.022;QD=1.36;ReadPosRankSum=5.260;SB=-4.000e+02 GT:AD:DP:GQ:PL 0/1:11,79:90:39:152,0,39 chrVII 149335 . A C 1140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=38.02;MQ0=0;MQRankSum=-1.115;QD=15.62;ReadPosRankSum=1.685;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1173,138,0 chrVII 149346 . G A 1329 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;QD=15.10;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1362,147,0 chrVII 149351 . T A 1632 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=17.74;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1665,180,0 chrVII 149387 . A G 1728 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.58;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1761,204,0 chrVII 149393 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=20.17;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1909,204,0 chrVII 149734 . A G 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.423;QD=22.73;ReadPosRankSum=1.470;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3592,417,0 chrVII 150130 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.71;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3414,378,0 chrVII 150211 . A G 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=107.4374;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;MQRankSum=-1.707;QD=18.07;ReadPosRankSum=1.656;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2509,294,0 chrVII 150234 . C T 2311 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;QD=18.05;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2344,252,0 chrVII 150258 . G A 1899 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.28;MQ0=0;QD=17.58;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1932,210,0 chrVII 150271 . A G 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;MQRankSum=-1.976;QD=16.55;ReadPosRankSum=2.405;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:2,107:110:99:1854,207,0 chrVII 150302 . T A 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=4.087;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;MQRankSum=-1.591;QD=17.82;ReadPosRankSum=1.676;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2260,246,0 chrVII 150329 . T C 2089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.452;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;MQRankSum=-0.056;QD=16.85;ReadPosRankSum=1.648;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2122,237,0 chrVII 150335 . A C 2117 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=16.41;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2150,240,0 chrVII 150399 . T C 1896 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=19.35;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1929,213,0 chrVII 150444 . G T 1795 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=19.94;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1828,201,0 chrVII 150466 . T C 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=90;Dels=0.00;FS=2.819;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;MQRankSum=-0.291;QD=17.82;ReadPosRankSum=2.394;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:2,87:90:99:1637,186,0 chrVII 150477 . T C 1487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;MQRankSum=-1.070;QD=16.71;ReadPosRankSum=1.693;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1520,177,0 chrVII 150487 . A G 1471 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;QD=16.53;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1504,177,0 chrVII 150517 . A G 1670 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=15.61;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1703,198,0 chrVII 150806 . T C 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=124;Dels=0.00;FS=3.540;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-1.675;QD=21.59;ReadPosRankSum=1.675;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2710,300,0 chrVII 150832 . T A 2785 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.83;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2818,303,0 chrVII 150894 . G A 3075 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.30;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3108,333,0 chrVII 150923 . A G 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-0.404;QD=20.56;ReadPosRankSum=1.706;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2788,309,0 chrVII 150956 . C A 2512 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=15.90;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:2545,273,0 chrVII 150964 . C T 2468 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=15.23;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:2501,270,0 chrVII 151115 . T C 3955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.9584;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.917;QD=22.99;ReadPosRankSum=1.569;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3955,453,0 chrVII 151493 . T C 3090 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.46;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3123,351,0 chrVII 151562 . A G 4635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=200;Dels=0.00;FS=11.676;HaplotypeScore=13.8396;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.107;QD=23.18;ReadPosRankSum=2.924;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:3,194:200:99:4635,522,0 chrVII 151622 . G A 5060.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.5558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.08;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5060,529,0 chrVII 151697 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.14;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3249,348,0 chrVII 151811 . A G 3924.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;MQRankSum=0.520;QD=21.44;ReadPosRankSum=2.369;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:3924,441,0 chrVII 152066 . A G 4014.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.4902;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.18;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,176:181:99:4014,450,0 chrVII 152150 . T C 5256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=15.2258;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.501;QD=22.75;ReadPosRankSum=1.702;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:1,227:231:99:5256,603,0 chrVII 152183 . T G 4930.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.3209;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.51;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4930,546,0 chrVII 152342 . C T 5941.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=6.0194;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.39;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:5941,640,0 chrVII 152354 . C T 5723.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.18;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5723,618,0 chrVII 152410 . C A 4664.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.0747;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.00;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4664,504,0 chrVII 152516 . T C 4755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.070;DP=231;Dels=0.00;FS=12.627;HaplotypeScore=34.7704;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=0.034;QD=20.58;ReadPosRankSum=3.422;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:4,224:231:99:4755,534,0 chrVII 152609 . C T 4469.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.12;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4469,486,0 chrVII 152750 . T C 3135 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=19.12;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3168,363,0 chrVII 152783 . T C 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=10.843;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=-0.777;QD=19.39;ReadPosRankSum=2.346;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3251,357,0 chrVII 152788 . G A 3130 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=19.09;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3163,342,0 chrVII 152800 . C T 2790 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=17.88;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2823,306,0 chrVII 152914 . G A 3576.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=23.37;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3576,381,0 chrVII 152918 . C T 3521.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=24.62;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3521,369,0 chrVII 152948 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.19;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2407,258,0 chrVII 153123 . G C 3944.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=22.80;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3944,441,0 chrVII 153164 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=22.15;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2957,312,0 chrVII 153186 . T C 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=1.135;QD=21.55;ReadPosRankSum=1.702;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2533,294,0 chrVII 153302 . A T 2909 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.38;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2942,327,0 chrVII 153368 . A G 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.209;QD=21.87;ReadPosRankSum=1.708;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3116,348,0 chrVII 153377 . T C 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=3.105;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=0.810;QD=21.46;ReadPosRankSum=1.657;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3037,336,0 chrVII 153437 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.4558;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.50;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2531,273,0 chrVII 153480 . C T 2387 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.31;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2420,261,0 chrVII 153481 . T C 2280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.381;DP=116;Dels=0.00;FS=8.120;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-1.030;QD=19.66;ReadPosRankSum=3.335;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:4,111:116:99:2313,264,0 chrVII 153503 . T A 2950 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.53;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2983,312,0 chrVII 153551 . T G 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=156;Dels=0.00;FS=2.973;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.404;QD=21.33;ReadPosRankSum=2.402;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3327,381,0 chrVII 153574 . A T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=22.93;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3853,420,0 chrVII 153602 . C T 3028 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=19.66;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3061,333,0 chrVII 153827 . T C 3779.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.23;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3779,423,0 chrVII 153833 . G A 4075.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.15;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4075,424,0 chrVII 153920 . G A 4305.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=17.4476;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.54;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4305,462,0 chrVII 154100 . T C 3891.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.74;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3891,444,0 chrVII 154159 . T C 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=185;Dels=0.00;FS=7.423;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-1.215;QD=21.66;ReadPosRankSum=2.423;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4007,450,0 chrVII 154184 . C T 3887.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=21.59;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3887,414,0 chrVII 154193 . C T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.12;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3964,435,0 chrVII 154299 . T C 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=170;Dels=0.00;FS=3.839;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.052;QD=21.52;ReadPosRankSum=1.711;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:1,166:170:99:3658,408,0 chrVII 154324 . C G 2979 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=19.34;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,150:154:99:3012,342,0 chrVII 154339 . G T 2749 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.09;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2782,300,0 chrVII 154496 . A G 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=122;Dels=0.00;FS=2.577;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.942;QD=21.16;ReadPosRankSum=2.926;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2614,297,0 chrVII 154779 . C T 2569 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.94;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2602,279,0 chrVII 154863 . C T 3554.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.6996;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.78;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3554,375,0 chrVII 154885 . C T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.94;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3579,381,0 chrVII 155125 . C T 3841.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0588;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.71;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3841,411,0 chrVII 155494 . A G 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.8211;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.029;QD=21.66;ReadPosRankSum=1.713;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:3877,438,0 chrVII 156057 . T C 1503 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=61.02;MQ0=0;QD=17.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1536,165,0 chrVII 156182 . G A 1356 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1389,150,0 chrVII 156252 . G A 2616 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2649,276,0 chrVII 157157 . G T 3871.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=22.7746;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.99;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3871,420,0 chrVII 157262 . T C 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=144;Dels=0.00;FS=6.004;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.824;QD=20.91;ReadPosRankSum=2.881;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:3044,351,0 chrVII 157264 . A G 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=3.195;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=1.010;QD=21.08;ReadPosRankSum=1.612;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3111,348,0 chrVII 157340 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=20.77;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,161:166:99:3448,396,0 chrVII 157453 . G C 3657.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=22.30;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3657,411,0 chrVII 157503 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=23.53;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3459,366,0 chrVII 157522 . C A 3123 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=20.55;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3156,336,0 chrVII 157566 . T G 2121 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=41.10;MQ0=0;QD=15.60;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2154,243,0 chrVII 157579 . A T 2020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=39.28;MQ0=0;MQRankSum=-1.579;QD=14.85;ReadPosRankSum=1.707;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2053,219,0 chrVII 157585 . A G 1888 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=140;Dels=0.00;FS=2.969;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;MQRankSum=-1.624;QD=13.49;ReadPosRankSum=2.415;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:1921,219,0 chrVII 157593 . A T 1944 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;QD=15.43;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1977,213,0 chrVII 157594 . C T 1951 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;QD=14.89;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1984,222,0 chrVII 157678 . A C 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.3842;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=1.517;QD=21.87;ReadPosRankSum=0.856;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3204,363,0 chrVII 157713 . A G 2876 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=23.19;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2909,321,0 chrVII 157735 . C A 2526 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=21.59;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2559,282,0 chrVII 157782 . T C 2099 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=19.99;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2132,249,0 chrVII 157822 . C G 2694 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.0244;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=23.43;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,111:115:99:2727,303,0 chrVII 157854 . G A 2869 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=24.31;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2902,306,0 chrVII 157884 . G A 3193 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.65;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3226,345,0 chrVII 157962 . G C 3417.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.33;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3417,384,0 chrVII 158115 . T C 4315.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.36;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4315,489,0 chrVII 158165 . A G 4211.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8672;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.695;QD=22.64;ReadPosRankSum=1.695;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4211,465,0 chrVII 158256 . C T 3604.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.10;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3604,399,0 chrVII 158457 . C G 3846.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.36;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3846,447,0 chrVII 158504 . C T 3612.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.61;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3612,396,0 chrVII 158527 . G C 2940 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.9206;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.42;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:2973,342,0 chrVII 158781 . C T 7872.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=17.6011;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=24.83;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,316:317:99:7872,844,0 chrVII 158916 . A T 169.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.574;DP=349;Dels=0.00;FS=50.886;HaplotypeScore=993.0477;MLEAC=1;MLEAF=0.500;MQ=39.51;MQ0=0;MQRankSum=-7.865;QD=0.48;ReadPosRankSum=-3.399;SB=-5.300e+02 GT:AD:DP:GQ:PL 0/1:206,106:349:99:199,0,1489 chrVII 158925 . G A 150.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.725;DP=373;Dels=0.00;FS=62.049;HaplotypeScore=795.7477;MLEAC=1;MLEAF=0.500;MQ=35.12;MQ0=0;MQRankSum=-5.617;QD=0.40;ReadPosRankSum=1.915;SB=-4.250e+02 GT:AD:DP:GQ:PL 0/1:237,136:373:99:180,0,1098 chrVII 158928 . A T 714.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.598;DP=378;Dels=0.00;FS=2.292;HaplotypeScore=968.6636;MLEAC=1;MLEAF=0.500;MQ=33.77;MQ0=0;MQRankSum=-1.067;QD=1.89;ReadPosRankSum=-3.996;SB=-1.029e+03 GT:AD:DP:GQ:PL 0/1:243,135:378:99:744,0,489 chrVII 158931 . G A 467.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.605;DP=381;Dels=0.00;FS=39.687;HaplotypeScore=697.2860;MLEAC=1;MLEAF=0.500;MQ=32.51;MQ0=0;MQRankSum=-2.351;QD=1.23;ReadPosRankSum=0.042;SB=-9.300e+02 GT:AD:DP:GQ:PL 0/1:209,172:381:99:497,0,518 chrVII 158934 . T A 308.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;DP=381;Dels=0.00;FS=28.070;HaplotypeScore=341.1731;MLEAC=1;MLEAF=0.500;MQ=31.72;MQ0=0;MQRankSum=-0.448;QD=0.81;ReadPosRankSum=0.902;SB=-6.220e+02 GT:AD:DP:GQ:PL 0/1:247,134:381:99:338,0,1719 chrVII 158949 . G A 1354.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.331;DP=434;Dels=0.00;FS=79.249;HaplotypeScore=209.5544;MLEAC=1;MLEAF=0.500;MQ=31.26;MQ0=0;MQRankSum=-2.122;QD=3.12;ReadPosRankSum=3.584;SB=-1.225e+03 GT:AD:DP:GQ:PL 0/1:184,250:434:99:1384,0,1241 chrVII 158961 . G A 1759.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.969;DP=439;Dels=0.00;FS=65.664;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=32.26;MQ0=0;MQRankSum=-3.075;QD=4.01;ReadPosRankSum=9.981;SB=-1.466e+03 GT:AD:DP:GQ:PL 0/1:154,285:439:99:1789,0,1091 chrVII 158964 . C A 1866.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.934;DP=443;Dels=0.00;FS=66.082;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=32.33;MQ0=0;MQRankSum=-1.189;QD=4.21;ReadPosRankSum=11.424;SB=-1.526e+03 GT:AD:DP:GQ:PL 0/1:150,293:443:99:1896,0,1068 chrVII 158967 . G A 3811.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=452;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=33.27;MQ0=0;QD=8.43;SB=-3.875e+03 GT:AD:DP:GQ:PL 1/1:0,451:452:99:3811,417,0 chrVII 158973 . G A 553.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.434;DP=447;Dels=0.00;FS=44.308;HaplotypeScore=5.8425;MLEAC=1;MLEAF=0.500;MQ=33.23;MQ0=0;MQRankSum=-2.112;QD=1.24;ReadPosRankSum=-12.008;SB=-8.090e+02 GT:AD:DP:GQ:PL 0/1:328,119:447:99:583,0,2245 chrVII 158976 . T A 491.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.833;DP=451;Dels=0.00;FS=33.353;HaplotypeScore=7.4199;MLEAC=1;MLEAF=0.500;MQ=34.01;MQ0=0;MQRankSum=-2.519;QD=1.09;ReadPosRankSum=-12.782;SB=-7.910e+02 GT:AD:DP:GQ:PL 0/1:340,111:451:99:521,0,2643 chrVII 158982 . A T 351.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;DP=442;Dels=0.00;FS=26.737;HaplotypeScore=8.4712;MLEAC=1;MLEAF=0.500;MQ=35.36;MQ0=0;MQRankSum=-1.811;QD=0.79;ReadPosRankSum=-14.395;SB=-6.520e+02 GT:AD:DP:GQ:PL 0/1:344,98:442:99:381,0,2829 chrVII 158991 . C T 3683.01 PASS AC=2;AF=1.00;AN=2;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=8.3187;MLEAC=2;MLEAF=1.00;MQ=40.02;MQ0=0;QD=10.96;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,335:336:99:3683,387,0 chrVII 159045 . G A 4250.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=5.8954;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=15.57;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:4250,459,0 chrVII 159141 . G A 4650.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=21.23;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4650,496,0 chrVII 159156 . T C 4523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.0096;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;MQRankSum=-0.016;QD=21.33;ReadPosRankSum=1.716;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4523,507,0 chrVII 159246 . G C 3822.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.97;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,170:174:99:3822,429,0 chrVII 159559 . A G 2613 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.90;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2646,303,0 chrVII 159586 . C T 2423 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.03;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2456,267,0 chrVII 159617 . C T 2728 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.73;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2761,291,0 chrVII 159705 . G A 2934 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.90;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2967,315,0 chrVII 159875 . C T 1642 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.0559;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.32;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1675,186,0 chrVII 160076 . T C 2064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.454;QD=24.57;ReadPosRankSum=1.650;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:2097,234,0 chrVII 160577 . A G 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=127;Dels=0.00;FS=5.633;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.056;QD=21.62;ReadPosRankSum=2.913;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2779,309,0 chrVII 160667 . C T 2590 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2623,282,0 chrVII 160758 . T C 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=3.522;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.192;QD=23.98;ReadPosRankSum=1.705;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3054,336,0 chrVII 160781 . G A 2336 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.46;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2369,261,0 chrVII 160998 . C A 2869 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.71;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2902,315,0 chrVII 161249 . C T 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.417;DP=93;Dels=0.00;FS=95.001;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.712;QD=18.85;ReadPosRankSum=5.430;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:19,74:93:99:1786,171,0 chrVII 161445 . T C 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=139;Dels=0.00;FS=6.117;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.960;QD=21.33;ReadPosRankSum=2.414;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:2,135:139:99:2998,330,0 chrVII 162080 . G A 4192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=201;Dels=0.00;FS=3.076;HaplotypeScore=13.5318;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.233;QD=20.86;ReadPosRankSum=0.646;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4192,453,0 chrVII 162554 . T C 2964 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2997,336,0 chrVII 162614 . A C 4146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.491;QD=23.69;ReadPosRankSum=1.712;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:4146,456,0 chrVII 162943 . C T 1290 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1323,141,0 chrVII 163149 . A G 72.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=8.06;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,7:9:12:105,12,0 chrVII 163245 . A T 798 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=21.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:90:831,90,0 chrVII 163257 . A G 670 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=18.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:36:84:703,84,0 chrVII 163360 . A C 1451 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.44;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1484,165,0 chrVII 163361 . G T 1522 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.44;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1555,165,0 chrVII 163472 . T G 3166 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.69;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3199,351,0 chrVII 163491 . C T 3398.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.85;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3398,363,0 chrVII 163894 . G A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.96;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4109,453,0 chrVII 164066 . C T 4159.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.36;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4159,444,0 chrVII 164087 . T C 3655.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.50;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3655,411,0 chrVII 164429 . T A 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.584;QD=23.11;ReadPosRankSum=1.672;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3975,418,0 chrVII 164444 . G A 4006.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.89;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4006,432,0 chrVII 164486 . C T 4152.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.7642;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.51;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4152,453,0 chrVII 164774 . T C 2961 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.10;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2994,333,0 chrVII 164885 . A G 3014 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.11;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3047,339,0 chrVII 164981 . T A 2164 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.43;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2197,237,0 chrVII 164982 . A G 2199 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.35;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2232,246,0 chrVII 165111 . T C 4016.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.34;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4016,447,0 chrVII 165308 . G T 4134.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.9747;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.36;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4134,444,0 chrVII 165441 . T A 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=-0.764;QD=17.60;ReadPosRankSum=1.646;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:2867,309,0 chrVII 165469 . G A 2611 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=16.63;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:2644,288,0 chrVII 165523 . C A 2941 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=18.3793;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.62;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2974,318,0 chrVII 165778 . A G 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=4.727;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.460;QD=18.93;ReadPosRankSum=1.697;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:3711,411,0 chrVII 165780 . C A 3985.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=19.93;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:3985,423,0 chrVII 165842 . A G 3487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=203;Dels=0.00;FS=3.369;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-0.532;QD=17.18;ReadPosRankSum=1.698;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:3487,390,0 chrVII 165866 . A G 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=171;Dels=0.00;FS=6.849;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.093;QD=20.70;ReadPosRankSum=2.392;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3540,405,0 chrVII 165895 . T C 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.2113;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-1.088;QD=20.01;ReadPosRankSum=1.652;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3462,387,0 chrVII 166200 . A G 42.27 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.600;DP=110;Dels=0.00;FS=3.049;HaplotypeScore=97.7411;MLEAC=1;MLEAF=0.500;MQ=54.79;MQ0=0;MQRankSum=1.018;QD=0.38;ReadPosRankSum=1.756;SB=-1.344e+03 GT:AD:DP:GQ:PL 0/1:2,108:110:9:72,0,9 chrVII 166257 . G A 2215 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.03;FS=0.000;HaplotypeScore=45.9025;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=18.46;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2248,243,0 chrVII 166667 . C G 2536 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.05;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,106:110:99:2569,288,0 chrVII 167076 . T C 2268 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.46;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2301,258,0 chrVII 167099 . C T 2423 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.03;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2456,273,0 chrVII 167443 . A G 2633 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.72;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2666,294,0 chrVII 167578 . C T 1962 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=20.02;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1995,213,0 chrVII 167583 . G C 1792 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=18.86;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1825,207,0 chrVII 167889 . C T 4355.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.19;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4355,463,0 chrVII 168156 . T C 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=205;Dels=0.00;FS=3.229;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.475;QD=20.29;ReadPosRankSum=1.664;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4159,465,0 chrVII 168663 . C T 2184 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2217,237,0 chrVII 168906 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=138;Dels=0.00;FS=5.449;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.044;QD=24.86;ReadPosRankSum=2.949;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3430,384,0 chrVII 169165 . C T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.11;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3376,363,0 chrVII 169612 . A G 3385.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.1351;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.87;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3385,384,0 chrVII 170211 . T C 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=173;Dels=0.00;FS=3.274;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.408;QD=19.24;ReadPosRankSum=1.712;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3329,369,0 chrVII 170295 . G A 4656.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.5096;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.12;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4656,498,0 chrVII 170662 . A G 1230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.489;DP=85;Dels=0.00;FS=2.542;HaplotypeScore=11.1516;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-0.750;QD=14.47;ReadPosRankSum=2.536;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:3,82:85:99:1263,144,0 chrVII 170880 . A C 2182 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.82;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2215,249,0 chrVII 171212 . C T 1088 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:99:1121,117,0 chrVII 171282 . T C 1752 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1785,201,0 chrVII 171571 . A T 2496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=107;Dels=0.00;FS=3.392;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-1.182;QD=23.33;ReadPosRankSum=1.603;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2529,270,0 chrVII 171619 . A G 2349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=117;Dels=0.00;FS=2.581;HaplotypeScore=7.2514;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-0.664;QD=20.08;ReadPosRankSum=2.940;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2382,270,0 chrVII 171633 . C T 2217 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=18.47;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2250,243,0 chrVII 171647 . T C 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=8.086;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=1.189;QD=20.12;ReadPosRankSum=2.348;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2467,276,0 chrVII 171690 . C T 3034 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.52;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3067,330,0 chrVII 171909 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.74;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3348,357,0 chrVII 171921 . T C 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=153;Dels=0.00;FS=3.036;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-0.509;QD=19.20;ReadPosRankSum=2.417;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:2971,333,0 chrVII 172111 . G A 2875 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.29;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2908,318,0 chrVII 172187 . G A 3921.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4440;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=25.30;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3921,417,0 chrVII 172380 . G C 2737 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.90;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2770,309,0 chrVII 172407 . A T 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.477;QD=21.35;ReadPosRankSum=1.707;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2958,327,0 chrVII 172548 . T C 2331 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2364,267,0 chrVII 172624 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.59;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3181,342,0 chrVII 172762 . T C 2539 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.29;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2572,297,0 chrVII 172879 . G A 2923 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.98;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2956,333,0 chrVII 173065 . T C 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=0.790;QD=23.14;ReadPosRankSum=1.698;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2440,270,0 chrVII 173089 . G C 2170 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.02;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=21.49;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2203,249,0 chrVII 173120 . C T 2338 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=18.12;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2371,252,0 chrVII 173129 . A G 2226 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=16.49;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2259,255,0 chrVII 173276 . C T 2883 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=24.64;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2916,315,0 chrVII 173486 . A G 2517 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.80;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2550,285,0 chrVII 173498 . A G 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=3.621;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.880;QD=21.71;ReadPosRankSum=1.704;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2682,294,0 chrVII 173777 . T C 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=143;Dels=0.00;FS=2.964;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.541;QD=23.89;ReadPosRankSum=2.415;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3416,384,0 chrVII 173856 . T A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.6684;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3658,408,0 chrVII 173954 . A G 3832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.782;QD=23.37;ReadPosRankSum=1.690;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3832,432,0 chrVII 174016 . C T 3828.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.23;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3828,403,0 chrVII 174098 . C G 5027.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=18.8827;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.27;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5027,564,0 chrVII 174324 . T C 4109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=205;Dels=0.00;FS=9.715;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.969;QD=20.04;ReadPosRankSum=2.425;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4109,459,0 chrVII 174329 . T C 4156.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.60;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4156,474,0 chrVII 174386 . A G 4015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.750;DP=213;Dels=0.00;FS=2.487;HaplotypeScore=10.6707;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-1.910;QD=18.85;ReadPosRankSum=2.939;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:3,210:213:99:4015,456,0 chrVII 174410 . G T 4151.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.93;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4151,453,0 chrVII 174507 . A G 4295.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.68;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4295,480,0 chrVII 175647 . T C 3732.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.0950;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.70;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3732,426,0 chrVII 175704 . C T 4490.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=20.60;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4490,492,0 chrVII 175787 . A G 5517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=239;Dels=0.00;FS=13.360;HaplotypeScore=17.9501;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.460;QD=23.08;ReadPosRankSum=2.945;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:3,235:239:99:5517,615,0 chrVII 175866 . G A 3394.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.2037;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=21.08;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3394,366,0 chrVII 175871 . A G 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.00;FS=3.027;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;MQRankSum=-0.190;QD=19.52;ReadPosRankSum=2.389;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3214,363,0 chrVII 175893 . C G 2901 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=18.13;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2934,333,0 chrVII 175905 . T C 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.01;FS=4.393;HaplotypeScore=8.2106;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.787;QD=17.78;ReadPosRankSum=1.677;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3343,390,0 chrVII 175991 . G T 4300.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.3463;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.98;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4300,474,0 chrVII 176415 . A G 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=157;Dels=0.00;FS=8.379;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=1.444;QD=22.93;ReadPosRankSum=2.354;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:2,152:157:99:3600,408,0 chrVII 176439 . C G 3496.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.41;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3496,390,0 chrVII 176712 . G A 4344.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.51;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4344,468,0 chrVII 177165 . C T 2721 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2754,297,0 chrVII 177201 . C T 2912 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2945,312,0 chrVII 177524 . T C 3155 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3188,360,0 chrVII 177632 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.84;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2957,318,0 chrVII 178052 . G T 3912.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3912,423,0 chrVII 178133 . G A 4500.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.86;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4500,483,0 chrVII 178509 . T C 2664 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.48;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2697,300,0 chrVII 180027 . A G 3081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=135;Dels=0.00;FS=9.161;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.716;QD=22.82;ReadPosRankSum=2.413;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:3114,360,0 chrVII 180319 . C T 2741 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=7.7653;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.63;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2774,297,0 chrVII 180686 . G A 5042.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.7169;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.24;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5042,546,0 chrVII 180873 . A G 4155.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.27;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4155,483,0 chrVII 181036 . A G 3905.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.57;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3905,453,0 chrVII 181069 . C G 4019.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=21.2084;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.15;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4019,468,0 chrVII 181138 . G A 5113.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.3829;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.78;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:5113,555,0 chrVII 181169 . G A 5486.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=19.5539;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.05;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,234:238:99:5486,586,0 chrVII 181314 . G A 5401.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=14.4682;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.32;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5401,580,0 chrVII 181935 . T A 3712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.795;QD=23.20;ReadPosRankSum=1.710;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3712,399,0 chrVII 182104 . T C 4031.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.39;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4031,447,0 chrVII 182242 . T G 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=3.109;HaplotypeScore=12.3579;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.187;QD=22.56;ReadPosRankSum=1.713;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4038,450,0 chrVII 182388 . C A 4171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.217;QD=24.39;ReadPosRankSum=1.237;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4171,447,0 chrVII 182485 . T G 4016.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.31;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4016,450,0 chrVII 182781 . A G 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.4116;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.347;QD=22.35;ReadPosRankSum=1.671;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3844,426,0 chrVII 182995 . G A 2647 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.52;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2680,288,0 chrVII 183038 . T C 2182 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.18;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2215,252,0 chrVII 183250 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2223;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.57;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2957,324,0 chrVII 183325 . T C 2574 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.45;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2607,303,0 chrVII 183346 . A G 2752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=137;Dels=0.00;FS=2.975;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.781;QD=20.09;ReadPosRankSum=2.163;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2785,318,0 chrVII 183481 . A G 3857.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.26;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3857,426,0 chrVII 183647 . A T 5217.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.8434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.20;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5217,553,0 chrVII 183709 . T C 4903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=214;Dels=0.00;FS=3.031;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.329;QD=22.91;ReadPosRankSum=2.403;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:2,211:214:99:4903,561,0 chrVII 183823 . A G 4881.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.9176;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.02;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4881,552,0 chrVII 183946 . T G 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=4.037;HaplotypeScore=10.3253;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.456;QD=23.17;ReadPosRankSum=1.709;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3545,390,0 chrVII 183996 . A G 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.618;QD=21.97;ReadPosRankSum=1.687;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3361,381,0 chrVII 184072 . T C 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=127;Dels=0.00;FS=8.327;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.707;QD=18.88;ReadPosRankSum=2.392;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2431,270,0 chrVII 184074 . T C 2364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=4.032;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.335;QD=18.91;ReadPosRankSum=1.704;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2397,267,0 chrVII 184213 . G T 2085 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.9323;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.72;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2118,234,0 chrVII 184280 . C G 2216 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=22.38;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2249,255,0 chrVII 184316 . C A 2413 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.66;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2446,267,0 chrVII 184357 . C T 2237 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=24.32;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2270,243,0 chrVII 184422 . G A 1996 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=22.18;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2029,216,0 chrVII 184438 . T C 1757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=91;Dels=0.00;FS=6.888;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-0.862;QD=19.31;ReadPosRankSum=2.395;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:2,88:91:99:1790,204,0 chrVII 184447 . A G 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-0.077;QD=18.54;ReadPosRankSum=1.694;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1702,195,0 chrVII 184464 . G A 1777 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.74;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1810,195,0 chrVII 184572 . C T 2283 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2316,252,0 chrVII 185139 . C T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3579,384,0 chrVII 185240 . T G 2659 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.8931;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.99;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2692,306,0 chrVII 185248 . C A 2832 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.3158;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.95;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2865,318,0 chrVII 185280 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=3.038;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.736;QD=22.26;ReadPosRankSum=2.369;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3384,378,0 chrVII 185393 . A C 3131 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.87;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3164,360,0 chrVII 185549 . G A 2746 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=24.52;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2779,291,0 chrVII 185620 . T C 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=122;Dels=0.00;FS=10.212;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=-0.958;QD=22.07;ReadPosRankSum=2.409;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2726,306,0 chrVII 185671 . T A 1612 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=74.4848;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=18.32;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1645,174,0 chrVII 185672 . T A 1585 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=89;Dels=0.00;FS=7.459;HaplotypeScore=74.4405;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;MQRankSum=1.426;QD=17.81;ReadPosRankSum=2.367;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1618,174,0 chrVII 185681 . T C 1517 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=83.5647;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;MQRankSum=0.035;QD=15.48;ReadPosRankSum=1.697;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1550,174,0 chrVII 185806 . G A 1451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.478;DP=66;Dels=0.00;FS=8.195;HaplotypeScore=10.0503;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;MQRankSum=2.375;QD=21.98;ReadPosRankSum=2.338;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1484,159,0 chrVII 185836 . A G 1141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=6.349;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;MQRankSum=-0.889;QD=16.78;ReadPosRankSum=2.377;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1174,132,0 chrVII 185846 . G A 1136 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=16.23;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1169,126,0 chrVII 185889 . C T 2255 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=20.50;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2288,243,0 chrVII 185969 . T A 618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.706;DP=87;Dels=0.00;FS=2.119;HaplotypeScore=59.8460;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;MQRankSum=-0.638;QD=7.10;ReadPosRankSum=3.010;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:4,83:87:81:651,81,0 chrVII 186184 . G T 3956.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=25.52;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3956,429,0 chrVII 186330 . G A 3980.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.2191;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.74;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3980,426,0 chrVII 186349 . T C 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.378;DP=212;Dels=0.00;FS=9.127;HaplotypeScore=9.4620;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-1.955;QD=19.92;ReadPosRankSum=3.386;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:4,207:212:99:4223,486,0 chrVII 186792 . C T 6403.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=9.2950;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.87;SB=-3.080e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:6403,691,0 chrVII 186999 . T C 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=157;Dels=0.00;FS=4.094;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-1.282;QD=20.24;ReadPosRankSum=1.710;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,153:157:99:3210,354,0 chrVII 187003 . T C 3070 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.33;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3103,351,0 chrVII 187054 . T G 2492 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.43;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2525,285,0 chrVII 187174 . A G 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=127;Dels=0.00;FS=2.913;HaplotypeScore=8.9480;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.459;QD=23.10;ReadPosRankSum=2.313;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2967,333,0 chrVII 187246 . A G 2685 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.83;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2718,306,0 chrVII 187348 . G T 2155 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=19.95;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2188,231,0 chrVII 187354 . A G 1970 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=17.91;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2003,228,0 chrVII 187373 . C G 2107 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=18.32;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2140,246,0 chrVII 187556 . C G 3589.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.77;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3589,399,0 chrVII 187678 . A G 4166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.592;QD=23.94;ReadPosRankSum=1.712;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:4166,465,0 chrVII 188143 . A G 2976 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.26;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3009,336,0 chrVII 188201 . A G 3817.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.72;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3817,435,0 chrVII 188297 . G A 4704.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.0639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4704,525,0 chrVII 188705 . A G 4445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.7846;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.700;QD=20.58;ReadPosRankSum=1.684;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4445,510,0 chrVII 188786 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=15.3864;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.436;QD=22.90;ReadPosRankSum=1.709;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3389,378,0 chrVII 188827 . A G 3705.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3705,411,0 chrVII 188978 . T A 3797.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3797,411,0 chrVII 189380 . G A 4520.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.5113;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=25.68;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4520,486,0 chrVII 189602 . G A 4938.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.8229;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.14;SB=-2.996e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4938,531,0 chrVII 189613 . A G 4357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.9480;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-1.631;QD=21.15;ReadPosRankSum=1.648;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4357,489,0 chrVII 189647 . T C 3537.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.87;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3537,396,0 chrVII 189910 . T G 3097 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.36;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3130,351,0 chrVII 189920 . G A 2975 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.56;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3008,315,0 chrVII 189986 . C T 2628 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.69;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2661,285,0 chrVII 190037 . C G 2801 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=14.3234;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.60;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2834,318,0 chrVII 190253 . G A 4539.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=26.09;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4539,475,0 chrVII 190288 . A G 4541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=190;Dels=0.00;FS=4.462;HaplotypeScore=11.5330;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.003;QD=23.90;ReadPosRankSum=1.714;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4541,507,0 chrVII 190333 . C T 3858.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.96;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3858,408,0 chrVII 190505 . C T 5517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=18.5888;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.170;QD=22.52;ReadPosRankSum=-0.170;SB=-2.968e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:5517,573,0 chrVII 190586 . G A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.27;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3318,351,0 chrVII 190620 . T G 2433 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=19.94;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2466,276,0 chrVII 190638 . T C 2761 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=19.17;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2794,312,0 chrVII 190661 . G A 3512.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.81;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3512,372,0 chrVII 191102 . A G 6899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=311;Dels=0.00;FS=2.998;HaplotypeScore=24.2938;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.394;QD=22.18;ReadPosRankSum=2.434;SB=-3.730e+03 GT:AD:DP:GQ:PL 1/1:2,306:311:99:6899,771,0 chrVII 191348 . A G 8731.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=418;Dels=0.00;FS=3.019;HaplotypeScore=22.8170;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.404;QD=20.89;ReadPosRankSum=2.426;SB=-4.859e+03 GT:AD:DP:GQ:PL 1/1:2,414:418:99:8731,1008,0 chrVII 191489 . A G 7461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=22.1040;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.630;QD=21.14;ReadPosRankSum=1.712;SB=-3.450e+03 GT:AD:DP:GQ:PL 1/1:1,351:353:99:7461,867,0 chrVII 191599 . C A 5439.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=13.7422;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.41;SB=-2.783e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5439,591,0 chrVII 191625 . C T 4915.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.94;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4915,526,0 chrVII 191706 . C T 4636.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.8047;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.66;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4636,501,0 chrVII 191779 . A G 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-0.061;QD=18.19;ReadPosRankSum=2.409;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3293,375,0 chrVII 191788 . T C 3055 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.52;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3088,345,0 chrVII 191826 . A T 1928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.572;QD=16.62;ReadPosRankSum=2.385;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:1961,219,0 chrVII 191868 . C T 1915 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=19.74;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1948,219,0 chrVII 192146 . G A 4416.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.0683;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=21.97;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4416,498,0 chrVII 192234 . C T 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.279;DP=262;Dels=0.00;FS=3.159;HaplotypeScore=1.8947;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;MQRankSum=3.504;QD=8.96;ReadPosRankSum=6.780;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:21,241:262:99:2381,229,0 chrVII 192254 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=8.6675;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;MQRankSum=-0.153;QD=13.83;ReadPosRankSum=1.717;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:1,236:238:99:3291,378,0 chrVII 192314 . G A 4259.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=17.75;SB=-2.775e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:4259,474,0 chrVII 192323 . T C 4173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=240;Dels=0.00;FS=6.568;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=-1.686;QD=17.39;ReadPosRankSum=2.398;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:2,236:240:99:4173,468,0 chrVII 192332 . G C 4181.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=16.86;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:4181,480,0 chrVII 192348 . T C 4185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=249;Dels=0.00;FS=3.750;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;MQRankSum=-0.647;QD=16.81;ReadPosRankSum=1.676;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:4185,471,0 chrVII 192677 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;QD=20.69;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3456,390,0 chrVII 192680 . T C 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.037;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;MQRankSum=-0.570;QD=19.63;ReadPosRankSum=1.711;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3193,366,0 chrVII 192701 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;QD=18.32;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2817,318,0 chrVII 192719 . C T 2609 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.93;MQ0=0;QD=16.94;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2642,285,0 chrVII 192722 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=0;QD=15.56;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2492,270,0 chrVII 192749 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=16.24;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2582,273,0 chrVII 192839 . G A 4013.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=23.33;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:4013,435,0 chrVII 192842 . G A 3750.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.6451;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=21.43;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3750,414,0 chrVII 192875 . A G 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.712;DP=158;Dels=0.00;FS=6.104;HaplotypeScore=15.9765;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=0.019;QD=19.77;ReadPosRankSum=2.917;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:3,154:158:99:3156,354,0 chrVII 193366 . A G 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=-1.600;QD=18.24;ReadPosRankSum=1.626;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2441,282,0 chrVII 193367 . G T 2660 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=19.28;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2693,303,0 chrVII 193460 . G A 2809 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=19.24;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2842,309,0 chrVII 193477 . G A 2522 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=20.84;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2555,270,0 chrVII 193504 . C T 1761 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=18.54;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1794,192,0 chrVII 193537 . T A 1433 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=15.08;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1466,165,0 chrVII 193564 . A C 1308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=-1.185;QD=17.21;ReadPosRankSum=1.687;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1341,147,0 chrVII 193573 . G A 1530 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=18.89;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1563,168,0 chrVII 193598 . G A 1684 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.02;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.92;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1717,186,0 chrVII 193710 . A G 2896 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.03;FS=0.000;HaplotypeScore=60.8469;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=23.17;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2929,324,0 chrVII 193839 . T C 3095 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.91;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3128,357,0 chrVII 193852 . T C 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=150;Dels=0.00;FS=2.909;HaplotypeScore=7.4100;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.254;QD=20.27;ReadPosRankSum=2.368;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3073,345,0 chrVII 194351 . A G 3649.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.7429;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.85;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3649,402,0 chrVII 194502 . T A 3058 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3091,330,0 chrVII 194553 . G A 3052 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.66;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3085,327,0 chrVII 194826 . A G 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.988;QD=20.72;ReadPosRankSum=1.706;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2872,330,0 chrVII 194880 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.53;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3030,339,0 chrVII 195078 . A G 2301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=111;Dels=0.00;FS=6.300;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=1.319;QD=20.73;ReadPosRankSum=2.383;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2334,261,0 chrVII 195096 . T G 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-1.197;QD=21.13;ReadPosRankSum=1.701;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2378,264,0 chrVII 195255 . T A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.34;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3361,372,0 chrVII 195534 . G T 3404.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.41;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3404,372,0 chrVII 195543 . T C 3128 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=19.92;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3161,360,0 chrVII 195692 . G A 3977.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.39;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3977,417,0 chrVII 195696 . G A 3693.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=18.37;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:3693,414,0 chrVII 195876 . G A 5785.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=15.9864;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.78;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5785,627,0 chrVII 195912 . A G 4666.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.8758;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.56;SB=-2.946e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4666,531,0 chrVII 196212 . T C 4009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.250;DP=203;Dels=0.00;FS=3.789;HaplotypeScore=4.4441;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.836;QD=19.75;ReadPosRankSum=1.646;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4009,439,0 chrVII 196356 . G A 4036.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.30;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4036,438,0 chrVII 196614 . T C 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.208;DP=137;Dels=0.00;FS=9.479;HaplotypeScore=28.4763;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=2.341;QD=21.24;ReadPosRankSum=0.895;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2943,336,0 chrVII 197043 . T C 4249.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=20.53;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4249,480,0 chrVII 197057 . T C 3706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=205;Dels=0.00;FS=2.997;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;MQRankSum=0.298;QD=18.08;ReadPosRankSum=2.401;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:2,201:205:99:3706,414,0 chrVII 197059 . G A 3701.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.8606;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.14;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:3701,414,0 chrVII 197175 . T C 4861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.021;DP=239;Dels=0.00;FS=21.679;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-1.114;QD=20.34;ReadPosRankSum=4.075;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:6,232:239:99:4861,558,0 chrVII 197229 . C G 4284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=12.5777;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=1.380;QD=18.63;ReadPosRankSum=1.717;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:1,225:230:99:4284,498,0 chrVII 197247 . G A 4912.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.7264;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.73;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4912,525,0 chrVII 197402 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.64;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3530,396,0 chrVII 197521 . C G 4221.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.8056;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.00;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,206:211:99:4221,492,0 chrVII 197702 . A G 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=173;Dels=0.00;FS=2.706;HaplotypeScore=11.5451;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.907;QD=19.91;ReadPosRankSum=1.935;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:3444,390,0 chrVII 197942 . C T 2683 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.64;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2716,291,0 chrVII 197989 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.79;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2836,300,0 chrVII 198003 . T A 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=3.424;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=0.709;QD=18.14;ReadPosRankSum=1.706;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2445,261,0 chrVII 198434 . A G 4819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=235;Dels=0.00;FS=3.588;HaplotypeScore=16.7732;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.736;QD=20.51;ReadPosRankSum=1.717;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:1,232:235:99:4819,561,0 chrVII 198476 . T C 4942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.270;DP=239;Dels=0.00;FS=12.301;HaplotypeScore=21.9696;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.304;QD=20.68;ReadPosRankSum=3.336;SB=-2.819e+03 GT:AD:DP:GQ:PL 1/1:4,235:239:99:4942,555,0 chrVII 198548 . C T 5890.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=16.8254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.74;SB=-3.597e+03 GT:AD:DP:GQ:PL 1/1:0,282:284:99:5890,648,0 chrVII 199183 . A T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.1769;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.81;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3448,378,0 chrVII 199294 . C T 3089 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3122,336,0 chrVII 199690 . A G 4211.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.27;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4211,480,0 chrVII 199888 . C T 5342.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=7.3669;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=19.22;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:0,275:278:99:5342,571,0 chrVII 199894 . A G 5219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.360;DP=293;Dels=0.00;FS=17.330;HaplotypeScore=13.5303;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=0.502;QD=17.81;ReadPosRankSum=3.372;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:4,289:293:99:5219,585,0 chrVII 200228 . G A 4329.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4329,489,0 chrVII 200312 . T A 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=157;Dels=0.00;FS=3.614;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.180;QD=22.91;ReadPosRankSum=1.620;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3597,384,0 chrVII 200350 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.72;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3245,360,0 chrVII 200351 . C T 3367.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.86;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3367,363,0 chrVII 200398 . T G 3433.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.0748;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=19.84;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3433,387,0 chrVII 200448 . G A 3679.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.2103;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.58;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3679,387,0 chrVII 200572 . C T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.80;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3831,408,0 chrVII 200713 . A G 3601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=170;Dels=0.00;FS=3.031;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-0.253;QD=21.18;ReadPosRankSum=2.406;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3601,399,0 chrVII 200728 . C T 3386.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.80;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3386,375,0 chrVII 200782 . T C 3764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.297;DP=184;Dels=0.00;FS=5.236;HaplotypeScore=15.3530;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=0.033;QD=20.46;ReadPosRankSum=3.364;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:4,179:184:99:3764,432,0 chrVII 200965 . C T 3398.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.64;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3398,357,0 chrVII 201040 . A G 4121.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.9515;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.58;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4121,468,0 chrVII 201093 . C T 4056.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.7795;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.72;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4056,432,0 chrVII 201499 . G A 3126 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3159,348,0 chrVII 201788 . G A 2910 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.45;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2943,315,0 chrVII 201853 . A G 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.687;DP=128;Dels=0.00;FS=6.265;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.656;QD=22.52;ReadPosRankSum=2.333;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2915,305,0 chrVII 201991 . C T 2209 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=16.99;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2242,240,0 chrVII 201992 . C T 2180 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=16.39;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2213,240,0 chrVII 202082 . A T 3593.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.95;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3593,387,0 chrVII 202338 . G T 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.081;DP=167;Dels=0.00;FS=3.199;HaplotypeScore=7.3858;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.115;QD=23.25;ReadPosRankSum=-1.648;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3883,407,0 chrVII 202475 . A G 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.357;QD=21.42;ReadPosRankSum=1.703;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2604,294,0 chrVII 203644 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.78;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3280,375,0 chrVII 203698 . A T 2965 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.50;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2998,327,0 chrVII 203839 . A T 2066 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.60;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2099,225,0 chrVII 203897 . A T 1860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.272;QD=23.54;ReadPosRankSum=2.322;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1893,195,0 chrVII 203987 . A T 1558 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.03;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.94;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1591,171,0 chrVII 204092 . T G 897 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=11.3223;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=14.47;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:930,105,0 chrVII 204100 . T C 841 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=0;QD=14.02;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:874,99,0 chrVII 204108 . C T 799 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;QD=13.10;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:90:832,90,0 chrVII 204113 . C T 807 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.26;MQ0=0;QD=13.68;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:90:840,90,0 chrVII 204118 . T A 879 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.56;MQ0=0;QD=14.90;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:912,99,0 chrVII 204186 . A G 1532 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.16;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1565,177,0 chrVII 204202 . C T 1925 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.87;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1958,204,0 chrVII 204226 . G A 2200 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=21.15;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2233,243,0 chrVII 204286 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6087;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=22.29;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1905,207,0 chrVII 204321 . A G 1290 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=21.15;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1323,150,0 chrVII 204339 . G A 1316 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=19.64;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1349,153,0 chrVII 204358 . G A 1553 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=20.17;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1586,174,0 chrVII 204618 . C A 1938 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0464;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=19.00;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1971,216,0 chrVII 204648 . T C 1716 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=16.66;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1749,198,0 chrVII 204665 . T G 1951 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7804;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=17.74;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1984,225,0 chrVII 204733 . C T 2337 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.15;MQ0=0;QD=23.14;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2370,270,0 chrVII 204736 . A G 2256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=6.415;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;MQRankSum=-1.557;QD=22.12;ReadPosRankSum=2.377;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2289,273,0 chrVII 204746 . T C 2071 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.79;MQ0=0;QD=21.35;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2104,249,0 chrVII 204760 . T C 1706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=40.25;MQ0=0;MQRankSum=-0.102;QD=20.07;ReadPosRankSum=1.691;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1739,210,0 chrVII 204785 . T G 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=3.261;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;MQRankSum=-0.993;QD=19.80;ReadPosRankSum=1.693;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1795,204,0 chrVII 204825 . T C 1959 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=86.9857;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=20.20;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1992,225,0 chrVII 204867 . G A 2316 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;QD=21.05;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2349,252,0 chrVII 204881 . T C 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=4.393;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;MQRankSum=-0.157;QD=19.63;ReadPosRankSum=1.697;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:1996,225,0 chrVII 204928 . G T 1180 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=32.09;MQ0=0;QD=16.16;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1213,144,0 chrVII 204931 . C G 969 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.29;MQ0=0;QD=14.91;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1002,129,0 chrVII 204972 . G A 118.13 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=83.5865;MLEAC=2;MLEAF=1.00;MQ=36.12;MQ0=0;QD=1.18;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:18:151,18,0 chrVII 205012 . C T 2195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=156;Dels=0.00;FS=4.688;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;MQRankSum=0.000;QD=14.07;ReadPosRankSum=1.710;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2228,246,0 chrVII 205021 . A G 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=4.827;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;MQRankSum=1.644;QD=15.06;ReadPosRankSum=1.710;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:2427,267,0 chrVII 205058 . C T 2827 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=20.79;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2860,315,0 chrVII 205098 . C T 1324 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.03;MQ0=0;QD=14.55;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1357,153,0 chrVII 205114 . A T 1305 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.74;MQ0=0;QD=15.00;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1338,150,0 chrVII 205122 . T C 1128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-1.945;QD=13.59;ReadPosRankSum=2.183;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1161,138,0 chrVII 205126 . A C 969 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.41;MQ0=0;QD=11.82;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1002,120,0 chrVII 205152 . C T 1672 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=14.93;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1705,198,0 chrVII 205170 . A G 2347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=128;Dels=0.00;FS=3.018;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=41.01;MQ0=0;MQRankSum=2.181;QD=18.34;ReadPosRankSum=2.411;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2380,267,0 chrVII 205215 . T C 3390.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.8688;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=21.59;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3390,378,0 chrVII 205307 . T A 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.340;HaplotypeScore=5.8993;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;MQRankSum=0.239;QD=22.86;ReadPosRankSum=1.591;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2868,318,0 chrVII 205334 . G A 2945 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;QD=24.14;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2978,321,0 chrVII 205391 . A G 2526 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=19.43;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2559,294,0 chrVII 205506 . A G 3147 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.21;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3180,351,0 chrVII 205559 . C A 2562 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=22.47;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2595,270,0 chrVII 205653 . G A 2362 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=20.72;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2395,255,0 chrVII 205830 . T G 1328 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=20.12;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1361,153,0 chrVII 205832 . C T 1375 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=21.48;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1408,153,0 chrVII 205869 . G T 1588 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.89;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1621,174,0 chrVII 206145 . G A 1676 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.94;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1709,180,0 chrVII 206452 . C A 1811 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.47;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1844,198,0 chrVII 206526 . T C 1972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.732;DP=94;Dels=0.00;FS=5.587;HaplotypeScore=11.1860;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-0.344;QD=20.98;ReadPosRankSum=2.925;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:3,91:94:99:2005,228,0 chrVII 206716 . T C 2323 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=19.04;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2356,270,0 chrVII 206722 . G A 2368 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=18.79;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2401,258,0 chrVII 206738 . T C 2489 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.3542;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=18.57;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2522,285,0 chrVII 206866 . T C 3106 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=22.67;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3139,351,0 chrVII 206906 . T C 2960 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=127.6369;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=20.41;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2993,330,0 chrVII 207071 . T C 2599 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.66;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2632,297,0 chrVII 207154 . A G 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=123;Dels=0.00;FS=2.942;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-1.130;QD=21.96;ReadPosRankSum=2.410;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2734,303,0 chrVII 207224 . G A 2304 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.21;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2337,252,0 chrVII 207263 . C T 2580 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2613,288,0 chrVII 207473 . T C 2825 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.1692;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.74;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2858,318,0 chrVII 207506 . C A 3874.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.1756;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=24.36;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3874,408,0 chrVII 207551 . T C 4233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=179;Dels=0.00;FS=6.193;HaplotypeScore=9.8322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.048;QD=23.65;ReadPosRankSum=2.395;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4233,474,0 chrVII 207713 . A G 3210.99 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=19.70;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3244,366,0 chrVII 207715 . T C 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.675;DP=166;Dels=0.00;FS=12.077;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-1.776;QD=19.32;ReadPosRankSum=3.713;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:5,161:166:99:3240,363,0 chrVII 208005 . T C 4211.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=24.48;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4211,468,0 chrVII 208034 . C T 3879.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.0382;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.20;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:3879,429,0 chrVII 208043 . T A 4227.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.5971;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.03;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4227,465,0 chrVII 208356 . A G 5617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=237;Dels=0.00;FS=5.623;HaplotypeScore=12.2328;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.470;QD=23.70;ReadPosRankSum=2.970;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:3,234:237:99:5617,627,0 chrVII 208622 . G A 2390 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=21.73;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2423,270,0 chrVII 208639 . T A 2269 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=22.03;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2302,243,0 chrVII 208815 . A G 739 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.98;MQ0=0;QD=9.99;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:84:772,84,0 chrVII 208818 . A C 776 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=10.49;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:93:809,93,0 chrVII 208835 . G T 989 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;QD=12.68;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1022,114,0 chrVII 208848 . A T 1353 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=16.70;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1386,150,0 chrVII 208875 . A G 1990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;MQRankSum=-1.351;QD=18.09;ReadPosRankSum=1.700;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2023,231,0 chrVII 208955 . G A 2777 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=13.0928;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=23.74;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2810,300,0 chrVII 208986 . G A 2450 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=24.50;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2483,270,0 chrVII 209066 . A G 2346 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=18.33;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2379,270,0 chrVII 209071 . C T 2477 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=19.66;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2510,270,0 chrVII 209117 . C A 1469 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=14.69;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1502,168,0 chrVII 209130 . A G 1450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=91;Dels=0.00;FS=7.202;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;MQRankSum=0.528;QD=15.93;ReadPosRankSum=2.369;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1483,168,0 chrVII 209279 . G A 3482.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.53;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3482,381,0 chrVII 209671 . G T 3187 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.68;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3220,354,0 chrVII 209977 . C T 2022 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.07;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2055,216,0 chrVII 210083 . C G 2010 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=22.09;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2043,234,0 chrVII 210093 . A G 1624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.098;DP=84;Dels=0.00;FS=3.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=-0.719;QD=19.33;ReadPosRankSum=2.362;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1657,186,0 chrVII 210122 . A T 1307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.421;DP=78;Dels=0.00;FS=4.007;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=0.311;QD=16.76;ReadPosRankSum=1.599;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1340,147,0 chrVII 210517 . T C 2764 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.83;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2797,324,0 chrVII 210785 . A G 3098 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.51;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3131,354,0 chrVII 210946 . T C 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=179;Dels=0.00;FS=2.950;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.322;QD=23.61;ReadPosRankSum=2.408;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4226,477,0 chrVII 211015 . G A 3871.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.91;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3871,429,0 chrVII 211168 . C T 3947.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.5672;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.82;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3947,417,0 chrVII 211576 . G A 3013 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3046,321,0 chrVII 211747 . T C 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.9038;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.724;QD=24.35;ReadPosRankSum=1.711;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4018,441,0 chrVII 211843 . T C 4079.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=187;Dels=0.00;FS=5.954;HaplotypeScore=17.0819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.147;QD=21.81;ReadPosRankSum=2.962;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:3,182:187:99:4079,465,0 chrVII 211975 . C T 4211.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.2675;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4211,471,0 chrVII 212216 . T C 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.910;QD=23.69;ReadPosRankSum=1.713;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:4241,468,0 chrVII 212554 . G A 3883.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.7076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3883,417,0 chrVII 212679 . A T 3702.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.20;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3702,393,0 chrVII 212731 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.42;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3536,396,0 chrVII 212869 . G A 3419.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.96;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3419,366,0 chrVII 213175 . G A 3791.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.78;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3791,399,0 chrVII 213411 . C A 4416.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.98;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4416,466,0 chrVII 213865 . T C 2246 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.88;MQ0=0;QD=22.92;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2279,252,0 chrVII 213927 . A G 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=96;Dels=0.00;FS=9.100;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.552;QD=21.84;ReadPosRankSum=2.373;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2130,243,0 chrVII 214166 . C T 3653.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=14.3373;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.19;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3653,393,0 chrVII 214440 . G A 3850.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=15.7402;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.62;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3850,417,0 chrVII 214683 . G A 5039.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.44;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:5039,546,0 chrVII 214710 . T C 4535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.1663;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.597;QD=21.80;ReadPosRankSum=0.870;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:1,204:208:99:4535,519,0 chrVII 214758 . C G 4737.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=18.1161;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.87;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4737,555,0 chrVII 214822 . C T 4920.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.43;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4920,523,0 chrVII 214926 . C T 5071.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.70;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5071,561,0 chrVII 215125 . T C 3155 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.5326;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.90;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3188,351,0 chrVII 215143 . A G 2668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.256;DP=123;Dels=0.00;FS=5.104;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=0.884;QD=21.69;ReadPosRankSum=3.386;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:4,118:123:99:2701,294,0 chrVII 215210 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.0979;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.33;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2646,288,0 chrVII 215394 . C T 2525 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.77;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2558,279,0 chrVII 215404 . A G 2425 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.55;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2458,276,0 chrVII 215575 . A G 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.334;QD=22.84;ReadPosRankSum=1.711;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3792,429,0 chrVII 215826 . C T 3501.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.14;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3501,384,0 chrVII 215900 . T C 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=181;Dels=0.00;FS=4.040;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-0.500;QD=20.98;ReadPosRankSum=1.713;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3798,403,0 chrVII 215909 . C T 3642.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.69;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3642,390,0 chrVII 216083 . G A 2526 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.37;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2559,276,0 chrVII 216207 . A G 2850 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.36;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2883,321,0 chrVII 216267 . T C 2096 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2129,240,0 chrVII 216479 . T C 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.696;QD=24.10;ReadPosRankSum=2.400;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3639,411,0 chrVII 216869 . A G 4471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.534;QD=23.05;ReadPosRankSum=1.714;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:4471,498,0 chrVII 217019 . A G 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=173;Dels=0.00;FS=7.012;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.321;QD=23.53;ReadPosRankSum=2.421;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:4071,456,0 chrVII 217121 . A G 4383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=193;Dels=0.00;FS=3.056;HaplotypeScore=15.0951;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.565;QD=22.71;ReadPosRankSum=1.714;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:1,189:193:99:4383,492,0 chrVII 217417 . G C 3918.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.46;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3918,438,0 chrVII 217461 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.0966;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.60;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3593,402,0 chrVII 217697 . G A 2725 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=14.8681;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.89;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2758,300,0 chrVII 217800 . T C 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.908;QD=22.38;ReadPosRankSum=1.684;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3234,360,0 chrVII 217847 . A G 3586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.910;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.620;QD=23.14;ReadPosRankSum=1.687;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3586,414,0 chrVII 218139 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3156,339,0 chrVII 218406 . A G 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=134;Dels=0.00;FS=6.592;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.844;QD=22.78;ReadPosRankSum=2.376;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3085,345,0 chrVII 218628 . T C 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=3.513;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.645;QD=23.52;ReadPosRankSum=1.703;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2856,315,0 chrVII 218669 . A G 2671 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.87;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2704,312,0 chrVII 218745 . G A 4144.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.3549;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.09;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4144,447,0 chrVII 218858 . A G 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=4.907;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.412;QD=24.21;ReadPosRankSum=1.679;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3205,354,0 chrVII 218900 . C T 4545.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.70;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4545,495,0 chrVII 218949 . C A 3952.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.58;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3952,429,0 chrVII 218961 . T G 3542.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.84;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3542,399,0 chrVII 219119 . A G 4208.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.87;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4208,468,0 chrVII 219263 . A G 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=4.119;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.708;QD=22.48;ReadPosRankSum=1.659;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3247,375,0 chrVII 219322 . A G 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.679;QD=22.44;ReadPosRankSum=1.706;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2972,333,0 chrVII 219563 . T C 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-1.163;QD=22.34;ReadPosRankSum=1.706;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3026,351,0 chrVII 219626 . T C 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=158;Dels=0.00;FS=3.017;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.790;QD=24.19;ReadPosRankSum=2.418;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3822,423,0 chrVII 219733 . T C 2707 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=21.83;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2740,306,0 chrVII 219776 . C T 2720 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=19.71;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2753,294,0 chrVII 219779 . A G 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=0.411;QD=19.64;ReadPosRankSum=1.707;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2763,315,0 chrVII 219792 . T C 2820 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=19.05;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2853,321,0 chrVII 219956 . A G 3294.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.8615;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.67;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3294,375,0 chrVII 219971 . A G 2832 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.1208;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=20.09;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2865,330,0 chrVII 220064 . A G 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=167;Dels=0.00;FS=3.142;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=0.653;QD=22.40;ReadPosRankSum=1.711;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3741,423,0 chrVII 220109 . C A 4124.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.94;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4124,444,0 chrVII 220121 . C T 3907.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.83;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3907,423,0 chrVII 220229 . A G 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=123;Dels=0.00;FS=2.739;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=1.970;QD=22.69;ReadPosRankSum=2.370;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2824,312,0 chrVII 220380 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.62;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3245,357,0 chrVII 220475 . T C 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.006;QD=23.73;ReadPosRankSum=2.419;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3844,426,0 chrVII 220519 . G A 4008.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.4554;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.44;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4008,432,0 chrVII 220697 . C A 4256.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.91;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4256,450,0 chrVII 220747 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.2864;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=20.15;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3076,330,0 chrVII 220760 . G C 2453 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.03;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2486,282,0 chrVII 220877 . T A 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.448;QD=22.76;ReadPosRankSum=1.706;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3083,327,0 chrVII 220928 . C A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.76;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3303,366,0 chrVII 221031 . A G 4158.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.75;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4158,465,0 chrVII 221066 . C A 4093.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.7116;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.42;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4093,444,0 chrVII 221407 . A G 4979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=227;Dels=0.00;FS=2.562;HaplotypeScore=18.3671;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.261;QD=21.93;ReadPosRankSum=2.889;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:3,224:227:99:4979,558,0 chrVII 221698 . A G 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=3.757;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.205;QD=22.70;ReadPosRankSum=1.709;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3450,387,0 chrVII 221779 . A T 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=161;Dels=0.00;FS=4.215;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.345;QD=23.28;ReadPosRankSum=1.646;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3748,417,0 chrVII 221962 . G A 3884.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.7855;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.98;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3884,411,0 chrVII 221994 . C T 3713.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.7684;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=18.94;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:3713,411,0 chrVII 222046 . C T 4213.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.55;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4213,450,0 chrVII 222140 . G T 2953 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.62;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2986,318,0 chrVII 222215 . G A 2525 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=25.00;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2558,276,0 chrVII 222244 . G A 2395 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.81;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2428,261,0 chrVII 222265 . G A 2816 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.17;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2849,318,0 chrVII 222592 . A G 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.487;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-1.530;QD=23.03;ReadPosRankSum=1.687;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3546,408,0 chrVII 222602 . G A 3482.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.0222;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.91;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3482,372,0 chrVII 222691 . A G 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=160;Dels=0.00;FS=3.381;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.185;QD=23.34;ReadPosRankSum=1.710;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3735,420,0 chrVII 222955 . G A 3830.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.24;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3830,403,0 chrVII 223151 . T C 2982 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3015,336,0 chrVII 223273 . C T 2572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=-0.587;QD=20.74;ReadPosRankSum=1.188;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2605,272,0 chrVII 223275 . G A 2669 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=21.88;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2702,288,0 chrVII 223303 . G A 2539 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2999;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.09;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2572,273,0 chrVII 223507 . G A 3613.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=23.77;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3613,384,0 chrVII 223519 . G A 3704.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.3205;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=21.92;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3704,390,0 chrVII 223550 . T C 3438.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.34;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3438,387,0 chrVII 223742 . C T 3215 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=20.48;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3248,345,0 chrVII 223756 . C T 2956 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=19.45;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2989,315,0 chrVII 223768 . G A 3029 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=19.29;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3062,330,0 chrVII 223861 . C T 3525.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.2106;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.60;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3525,378,0 chrVII 223948 . A G 3883.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.19;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3883,429,0 chrVII 224029 . C T 4292.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=24.25;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4292,457,0 chrVII 224467 . G C 3854.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.3490;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.39;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:3854,438,0 chrVII 224560 . T C 4062.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=20.62;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4062,447,0 chrVII 224572 . C T 4176.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=20.78;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4176,447,0 chrVII 224584 . A G 3939.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.3347;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=18.15;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:3939,453,0 chrVII 224620 . C A 3742.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=20.34;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3742,411,0 chrVII 224644 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=186;Dels=0.00;FS=7.109;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;MQRankSum=-1.832;QD=19.90;ReadPosRankSum=2.423;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:2,181:186:99:3702,420,0 chrVII 224653 . G A 4129.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0885;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=22.56;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4129,462,0 chrVII 224828 . C T 7739.01 filter AC=2;AF=1.00;AN=2;DP=383;Dels=0.00;FS=0.000;HaplotypeScore=9.7821;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=20.21;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,382:383:99:7739,835,0 chrVII 224869 . G A 5247.01 filter AC=2;AF=1.00;AN=2;DP=464;Dels=0.00;FS=0.000;HaplotypeScore=851.3234;MLEAC=2;MLEAF=1.00;MQ=42.66;MQ0=0;QD=11.31;SB=-3.106e+03 GT:AD:DP:GQ:PL 1/1:0,462:464:99:5247,582,0 chrVII 224899 . T G 5470.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.440;DP=514;Dels=0.02;FS=0.000;HaplotypeScore=50.2698;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=0;MQRankSum=-1.965;QD=10.64;ReadPosRankSum=2.280;SB=-4.317e+03 GT:AD:DP:GQ:PL 1/1:2,504:506:99:5470,636,0 chrVII 224901 . C T 5977.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=520;Dels=0.02;FS=0.000;HaplotypeScore=51.2030;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;QD=11.49;SB=-4.526e+03 GT:AD:DP:GQ:PL 1/1:0,512:512:99:5977,651,0 chrVII 224909 . C T 7065.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=525;Dels=0.00;FS=0.000;HaplotypeScore=32.1103;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;QD=13.46;SB=-5.018e+03 GT:AD:DP:GQ:PL 1/1:0,524:525:99:7065,748,0 chrVII 224983 . G A 8173.01 filter AC=2;AF=1.00;AN=2;DP=456;Dels=0.00;FS=0.000;HaplotypeScore=13.1703;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=17.92;SB=-4.522e+03 GT:AD:DP:GQ:PL 1/1:0,456:456:99:8173,906,0 chrVII 224994 . T C 8207.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=430;Dels=0.00;FS=4.283;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.133;QD=19.09;ReadPosRankSum=1.684;SB=-4.126e+03 GT:AD:DP:GQ:PL 1/1:1,429:430:99:8207,930,0 chrVII 225389 . C T 4215.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4215,448,0 chrVII 225550 . A G 4740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.601;QD=22.36;ReadPosRankSum=1.667;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4740,534,0 chrVII 225598 . C G 4944.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.68;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:4944,564,0 chrVII 225759 . A G 4021.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.15;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4021,468,0 chrVII 226054 . C T 5904.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=15.1309;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.45;SB=-3.080e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:5904,634,0 chrVII 226152 . C T 6248.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.14;SB=-3.591e+03 GT:AD:DP:GQ:PL 1/1:0,267:270:99:6248,661,0 chrVII 226182 . T C 5572.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=8.2944;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.35;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,259:261:99:5572,642,0 chrVII 226396 . G A 7444.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=30.3680;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.02;SB=-3.681e+03 GT:AD:DP:GQ:PL 1/1:0,338:338:99:7444,808,0 chrVII 226434 . A G 7749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=351;Dels=0.00;FS=6.784;HaplotypeScore=27.2878;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.255;QD=22.08;ReadPosRankSum=2.415;SB=-4.107e+03 GT:AD:DP:GQ:PL 1/1:2,349:351:99:7749,888,0 chrVII 226902 . C T 5773.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.69;SB=-3.639e+03 GT:AD:DP:GQ:PL 1/1:0,277:279:99:5773,619,0 chrVII 226920 . T C 5838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=293;Dels=0.00;FS=3.018;HaplotypeScore=13.9312;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.114;QD=19.92;ReadPosRankSum=2.407;SB=-3.559e+03 GT:AD:DP:GQ:PL 1/1:2,288:293:99:5838,654,0 chrVII 226965 . T C 5800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.661;DP=288;Dels=0.00;FS=7.950;HaplotypeScore=18.6925;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.334;QD=20.14;ReadPosRankSum=3.759;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:5,282:288:99:5800,663,0 chrVII 227205 . C T 6340.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=12.8458;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.81;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:6340,702,0 chrVII 227280 . A G 6232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=269;Dels=0.00;FS=7.178;HaplotypeScore=18.3385;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=2.039;QD=23.17;ReadPosRankSum=2.431;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:2,267:269:99:6232,717,0 chrVII 227523 . T C 3439.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.6203;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.77;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3439,387,0 chrVII 227723 . A G 2048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=91;Dels=0.00;FS=4.491;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.463;QD=22.51;ReadPosRankSum=1.694;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:2081,234,0 chrVII 228148 . C T 7376.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=13.4217;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=23.87;SB=-3.921e+03 GT:AD:DP:GQ:PL 1/1:0,307:309:99:7376,793,0 chrVII 228350 . C T 3833.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.06;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3833,414,0 chrVII 228403 . T A 2541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=3.795;HaplotypeScore=9.6219;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.702;QD=22.10;ReadPosRankSum=1.702;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2574,285,0 chrVII 228580 . A G 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.024;QD=21.14;ReadPosRankSum=1.683;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1534,174,0 chrVII 228659 . C G 2389 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=23.19;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2422,267,0 chrVII 228682 . C G 2223 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=18.52;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2256,252,0 chrVII 228702 . A C 1735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=8.407;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.38;MQ0=0;MQRankSum=-1.487;QD=15.09;ReadPosRankSum=2.407;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:1768,195,0 chrVII 228739 . C T 1161 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=0;QD=10.75;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1194,129,0 chrVII 228740 . C T 1173 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=0;QD=10.96;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1206,129,0 chrVII 228746 . C T 1058 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=0;QD=8.60;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1091,117,0 chrVII 228769 . G A 1091 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=9.09;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1124,126,0 chrVII 228776 . G C 1223 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.19;MQ0=0;QD=10.45;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,114:117:99:1256,144,0 chrVII 228801 . T C 1833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;MQRankSum=-2.794;QD=13.89;ReadPosRankSum=2.947;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:3,129:132:99:1866,213,0 chrVII 228955 . G A 4991.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=24.00;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4991,526,0 chrVII 229060 . C T 4613.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.30;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4613,495,0 chrVII 229174 . G A 5157.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.3234;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.77;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5157,556,0 chrVII 229302 . A G 5306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=226;Dels=0.00;FS=7.156;HaplotypeScore=8.0027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.791;QD=23.48;ReadPosRankSum=2.373;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:2,223:226:99:5306,591,0 chrVII 229549 . A G 5348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.051;QD=22.76;ReadPosRankSum=1.717;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:5348,597,0 chrVII 229594 . C T 5537.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.2502;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=23.76;SB=-3.101e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5537,586,0 chrVII 229637 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=17.88;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:3559,393,0 chrVII 229638 . T C 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=195;Dels=0.00;FS=3.825;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=0.709;QD=18.27;ReadPosRankSum=1.678;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:3562,390,0 chrVII 229770 . A G 4089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.345;QD=23.91;ReadPosRankSum=1.712;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4089,462,0 chrVII 230024 . C A 2779 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2812,294,0 chrVII 230072 . A G 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.251;QD=22.45;ReadPosRankSum=1.700;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2480,279,0 chrVII 230207 . A G 3483.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3483,396,0 chrVII 230410 . G T 4963.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.85;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4963,534,0 chrVII 230483 . G A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4204,442,0 chrVII 230701 . C T 4541.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.2483;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.95;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4541,489,0 chrVII 230742 . A G 4449.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.17;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4449,495,0 chrVII 231071 . G A 3225.28 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.20;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3258,345,0 chrVII 231097 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.15;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2952,324,0 chrVII 231109 . T C 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=145;Dels=0.00;FS=8.795;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=0.788;QD=20.02;ReadPosRankSum=2.416;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2936,339,0 chrVII 231313 . C G 2110 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=20.69;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2143,249,0 chrVII 231415 . G A 1752 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.9833;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1785,192,0 chrVII 231712 . A G 2949 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2982,345,0 chrVII 232073 . C G 3130 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6253;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.26;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3163,354,0 chrVII 232111 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.51;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3284,372,0 chrVII 232321 . T C 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=4.051;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.738;QD=25.02;ReadPosRankSum=1.704;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3085,345,0 chrVII 232615 . T A 4853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=210;Dels=0.00;FS=2.717;HaplotypeScore=22.2729;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.417;QD=23.11;ReadPosRankSum=2.426;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4853,525,0 chrVII 232858 . G A 4016.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4016,429,0 chrVII 232997 . C T 3677.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.84;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3677,385,0 chrVII 233590 . T G 3201 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.8187;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3234,372,0 chrVII 233683 . C T 3425.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.9534;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.95;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3425,369,0 chrVII 233704 . A G 3324.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.61;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3324,369,0 chrVII 233752 . G A 3044 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.22;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3077,324,0 chrVII 233812 . A G 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=142;Dels=0.00;FS=3.670;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.415;QD=21.38;ReadPosRankSum=1.683;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3069,354,0 chrVII 234033 . A C 4888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.172;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.511;QD=23.73;ReadPosRankSum=-0.034;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:1,203:206:99:4888,535,0 chrVII 234162 . A G 4730.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.4943;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.31;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4730,537,0 chrVII 234279 . G C 4588.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.16;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4588,525,0 chrVII 234499 . C G 3601.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.56;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3601,411,0 chrVII 234553 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.77;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3529,375,0 chrVII 234852 . G A 3118 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.79;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3151,348,0 chrVII 235001 . C T 5164.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.80;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:5164,544,0 chrVII 235227 . G A 4773.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.60;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4773,528,0 chrVII 235392 . C T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4461,483,0 chrVII 235464 . G A 4698.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.3458;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.85;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4698,528,0 chrVII 236083 . A G 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=3.102;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.206;QD=23.71;ReadPosRankSum=1.659;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3390,381,0 chrVII 236277 . C T 2726 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.30;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2759,294,0 chrVII 236530 . A C 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=3.122;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.592;QD=22.10;ReadPosRankSum=1.644;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3492,396,0 chrVII 236710 . G A 3023 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.29;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3056,336,0 chrVII 236853 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=22.08;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2749,297,0 chrVII 236862 . A C 2153 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=18.40;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2186,246,0 chrVII 237052 . A G 2535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-0.674;QD=23.26;ReadPosRankSum=1.700;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2568,282,0 chrVII 237071 . G A 2349 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=23.26;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2382,255,0 chrVII 237114 . A G 2185 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.42;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2218,249,0 chrVII 237207 . C T 2657 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.54;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2690,297,0 chrVII 237218 . A G 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=3.736;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=0.426;QD=20.52;ReadPosRankSum=1.705;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2721,315,0 chrVII 237456 . A G 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=140;Dels=0.00;FS=2.934;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-0.781;QD=22.30;ReadPosRankSum=2.362;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3155,357,0 chrVII 237523 . A G 3032 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.50;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3065,342,0 chrVII 237668 . A G 3018 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.52;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3051,345,0 chrVII 237697 . T C 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.260;QD=22.57;ReadPosRankSum=1.703;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2764,318,0 chrVII 237739 . A G 2698 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.6253;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.24;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2731,315,0 chrVII 238407 . A G 3028 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.29;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3061,345,0 chrVII 238561 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.50;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3070,330,0 chrVII 238828 . T C 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.399;DP=148;Dels=0.01;FS=8.898;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-1.073;QD=18.60;ReadPosRankSum=3.315;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:4,142:146:99:2786,309,0 chrVII 238829 . T C 2828 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.11;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2861,315,0 chrVII 238913 . T C 4540.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.72;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4540,504,0 chrVII 238928 . A G 4471.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.47;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4471,495,0 chrVII 238995 . C A 4218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.374;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.3942;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.791;QD=22.32;ReadPosRankSum=-0.546;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4218,435,0 chrVII 239207 . C T 4484.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.23;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4484,483,0 chrVII 239465 . A C 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=3.015;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.988;QD=23.44;ReadPosRankSum=2.381;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3376,372,0 chrVII 239557 . T C 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.291;QD=22.76;ReadPosRankSum=1.710;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3574,414,0 chrVII 239625 . A T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3289,354,0 chrVII 239681 . A G 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=121;Dels=0.00;FS=2.874;HaplotypeScore=9.7105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.379;QD=23.37;ReadPosRankSum=2.368;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2861,321,0 chrVII 239787 . C T 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.952;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.2526;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.399;QD=23.98;ReadPosRankSum=1.153;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3908,369,0 chrVII 240323 . G A 2723 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.14;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2756,297,0 chrVII 241024 . C T 1490 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1523,168,0 chrVII 241131 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.77;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1591,171,0 chrVII 241274 . G T 2859 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=10.4211;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=25.08;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2892,309,0 chrVII 241508 . T C 3155 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.22;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3188,360,0 chrVII 241536 . C T 3085 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.36;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3118,336,0 chrVII 241696 . T A 2581 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0884;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.06;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2614,291,0 chrVII 242280 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.96;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3156,333,0 chrVII 242295 . T A 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=3.726;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=1.455;QD=21.80;ReadPosRankSum=1.677;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2758,294,0 chrVII 242367 . C T 2791 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.85;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2824,300,0 chrVII 242463 . T C 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=135;Dels=0.00;FS=6.060;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.530;QD=21.22;ReadPosRankSum=2.948;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:2898,321,0 chrVII 242574 . G A 3374.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.63;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3374,366,0 chrVII 242598 . C T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=25.67;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3311,354,0 chrVII 242628 . T C 2529 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.99;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2562,288,0 chrVII 242724 . G A 3513.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3513,375,0 chrVII 242766 . A G 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.434;QD=22.08;ReadPosRankSum=1.709;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,150:154:99:3400,387,0 chrVII 243089 . G A 5752.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=22.1265;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.19;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5752,619,0 chrVII 243186 . T C 5174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.190;DP=239;Dels=0.00;FS=3.021;HaplotypeScore=31.7572;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.692;QD=21.65;ReadPosRankSum=2.418;SB=-2.898e+03 GT:AD:DP:GQ:PL 1/1:2,235:239:99:5174,579,0 chrVII 243698 . C T 4985.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.51;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4985,543,0 chrVII 243903 . T C 5732.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.75;SB=-3.077e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5732,648,0 chrVII 243928 . C T 5563.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.08;SB=-3.080e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5563,601,0 chrVII 244125 . A G 5493.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.0508;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.99;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5493,609,0 chrVII 244223 . T G 4075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.125;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.7324;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.231;QD=20.48;ReadPosRankSum=0.380;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:2,195:199:99:4075,459,0 chrVII 244800 . G A 4958.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.6953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4958,552,0 chrVII 244917 . A G 4647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.577;DP=235;Dels=0.00;FS=7.437;HaplotypeScore=17.1311;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.424;QD=19.77;ReadPosRankSum=3.759;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:5,229:235:99:4647,540,0 chrVII 245253 . G A 3476.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.8377;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3476,372,0 chrVII 245373 . G A 4240.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.56;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4240,462,0 chrVII 245422 . C T 2982 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.4982;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=23.12;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3015,324,0 chrVII 245770 . T C 2645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.470;QD=22.42;ReadPosRankSum=1.703;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2678,300,0 chrVII 245772 . A G 2552 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=21.63;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2585,294,0 chrVII 246204 . C T 4563.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.4196;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.28;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4563,489,0 chrVII 246459 . A C 2924 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.2283;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.15;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2957,330,0 chrVII 247758 . T C 4979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=233;Dels=0.00;FS=2.916;HaplotypeScore=21.2780;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.110;QD=21.37;ReadPosRankSum=2.396;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:2,227:233:99:4979,570,0 chrVII 248162 . A T 1420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=-1.003;QD=18.93;ReadPosRankSum=2.384;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1453,162,0 chrVII 248177 . C A 1201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.402;DP=64;Dels=0.00;FS=5.689;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;MQRankSum=-0.577;QD=18.77;ReadPosRankSum=0.412;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1234,132,0 chrVII 248203 . C T 1023 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=19.30;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1056,111,0 chrVII 248213 . C A 1001 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=18.54;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1034,114,0 chrVII 248225 . G C 961 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.61;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:994,111,0 chrVII 248302 . A T 776 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.48;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:90:809,90,0 chrVII 248605 . T A 1957 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.16;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1990,213,0 chrVII 248886 . A T 2910 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.66;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2943,321,0 chrVII 249040 . G A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.6864;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.03;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3408,366,0 chrVII 249058 . A G 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=137;Dels=0.00;FS=5.978;HaplotypeScore=5.8442;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-0.578;QD=21.01;ReadPosRankSum=2.771;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:3,133:137:99:2912,330,0 chrVII 249219 . T C 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=142;Dels=0.00;FS=3.231;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.725;QD=22.19;ReadPosRankSum=1.683;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3184,348,0 chrVII 249541 . G A 2302 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.16;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2335,246,0 chrVII 249639 . A G 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=105;Dels=0.00;FS=3.407;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.295;QD=22.08;ReadPosRankSum=1.698;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2351,270,0 chrVII 249911 . C G 3018 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.87;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3051,351,0 chrVII 250183 . C A 4639.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.8364;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.55;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4639,495,0 chrVII 250194 . C T 4622.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.0842;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.00;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4622,498,0 chrVII 250677 . T A 4022.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=18.79;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4022,435,0 chrVII 250680 . G A 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=213;Dels=0.00;FS=3.354;HaplotypeScore=2.6061;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=0.940;QD=18.82;ReadPosRankSum=0.396;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4008,415,0 chrVII 251511 . G A 8055.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=21.4259;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:0,323:328:99:8055,868,0 chrVII 251831 . C T 5022.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5022,540,0 chrVII 251869 . C T 4165.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=15.4717;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,179:184:99:4165,447,0 chrVII 252024 . C T 2871 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=25.18;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2904,312,0 chrVII 252272 . G C 2026 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.25;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2059,234,0 chrVII 252274 . G A 2114 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=19.76;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2147,225,0 chrVII 252343 . T C 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=132;Dels=0.00;FS=2.860;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.929;QD=21.14;ReadPosRankSum=2.412;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2824,315,0 chrVII 252406 . G A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=21.42;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3577,396,0 chrVII 252410 . C A 3793.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.18;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3793,397,0 chrVII 252804 . A T 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.499;QD=21.71;ReadPosRankSum=1.703;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2660,294,0 chrVII 252951 . G A 2324 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2357,255,0 chrVII 253383 . C T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.41;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3518,375,0 chrVII 253692 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=14.3741;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.11;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3536,375,0 chrVII 253849 . A G 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.240;DP=160;Dels=0.00;FS=17.617;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-1.470;QD=22.33;ReadPosRankSum=3.393;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:4,156:160:99:3573,417,0 chrVII 253915 . A T 2575 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=21.82;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2608,279,0 chrVII 253916 . T C 2476 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.63;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2509,282,0 chrVII 253953 . A G 2195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=0.417;QD=18.76;ReadPosRankSum=2.407;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:2,113:117:99:2228,246,0 chrVII 254069 . A G 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=0.000;QD=21.61;ReadPosRankSum=1.706;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2907,327,0 chrVII 254092 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=19.79;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2704,297,0 chrVII 254134 . G T 1924 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;QD=20.25;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1957,225,0 chrVII 254139 . T C 1829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=3.108;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=38.69;MQ0=0;MQRankSum=0.885;QD=20.32;ReadPosRankSum=1.694;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1862,219,0 chrVII 254177 . A G 1261 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;QD=18.82;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1294,150,0 chrVII 254184 . T A 1172 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;QD=21.31;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1205,132,0 chrVII 254193 . T A 917 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;QD=19.93;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:950,105,0 chrVII 254273 . C A 1597 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=44.03;MQ0=0;QD=16.64;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1630,180,0 chrVII 254281 . G A 1768 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.07;MQ0=0;QD=18.04;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1801,195,0 chrVII 254298 . T C 1546 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=0;QD=16.45;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1579,180,0 chrVII 254318 . G A 1017 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=73.1267;MLEAC=2;MLEAF=1.00;MQ=31.47;MQ0=0;QD=11.96;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1050,120,0 chrVII 254344 . C G 906 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=10.92;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:939,108,0 chrVII 254363 . C T 807 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=51.7077;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=10.09;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:93:840,93,0 chrVII 254379 . T G 64.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.585;DP=92;Dels=0.00;FS=7.590;HaplotypeScore=75.2566;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=0;MQRankSum=-1.146;QD=0.70;ReadPosRankSum=3.866;SB=-6.135e+02 GT:AD:DP:GQ:PL 1/1:6,86:92:12:97,12,0 chrVII 254422 . G A 2217 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.3877;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=16.42;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2250,246,0 chrVII 254489 . T C 3419.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=24.42;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3419,384,0 chrVII 254925 . G A 1628.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.805;DP=403;Dels=0.00;FS=15.672;HaplotypeScore=26.2935;MLEAC=1;MLEAF=0.500;MQ=24.19;MQ0=133;MQRankSum=-2.075;QD=4.04;ReadPosRankSum=-2.448;SB=-8.880e+02 GT:AD:DP:GQ:PL 0/1:236,162:403:99:1658,0,2579 chrVII 254952 . T C 3465.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.480;DP=447;Dels=0.00;FS=5.154;HaplotypeScore=17.8199;MLEAC=1;MLEAF=0.500;MQ=29.14;MQ0=64;MQRankSum=-0.425;QD=7.75;ReadPosRankSum=-0.698;SB=-1.785e+03 GT:AD:DP:GQ:PL 0/1:210,236:447:99:3465,0,3042 chrVII 255210 . T C 2087.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.808;DP=270;Dels=0.00;FS=132.707;HaplotypeScore=29.9152;MLEAC=1;MLEAF=0.500;MQ=24.66;MQ0=28;MQRankSum=6.054;QD=7.73;ReadPosRankSum=-0.959;SB=-9.650e+02 GT:AD:DP:GQ:PL 0/1:99,166:270:99:2117,0,300 chrVII 255611 . T G 4143.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4143,459,0 chrVII 255756 . G A 4510.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=18.3074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4510,489,0 chrVII 256090 . C T 4191.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7225;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.51;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4191,450,0 chrVII 256121 . A G 3916.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.17;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3916,441,0 chrVII 256172 . T C 2998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.613;DP=138;Dels=0.00;FS=2.590;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.321;QD=21.72;ReadPosRankSum=2.876;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3031,336,0 chrVII 256325 . G A 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=173;Dels=0.00;FS=4.548;HaplotypeScore=14.8965;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.152;QD=23.29;ReadPosRankSum=1.712;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4030,428,0 chrVII 256385 . C T 3935.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.56;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3935,429,0 chrVII 256414 . T A 4172.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.70;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4172,456,0 chrVII 256952 . C T 2542 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2575,279,0 chrVII 257061 . A G 2689 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.86;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2722,303,0 chrVII 257078 . A T 2558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.127;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.107;QD=22.64;ReadPosRankSum=1.701;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2591,279,0 chrVII 257214 . A G 2180 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.71;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2213,252,0 chrVII 257566 . A G 2303 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.76;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2336,261,0 chrVII 258270 . T A 3734.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.49;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3734,417,0 chrVII 258527 . A G 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.188;DP=142;Dels=0.00;FS=2.945;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.061;QD=21.58;ReadPosRankSum=2.397;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3097,354,0 chrVII 258772 . G A 3684.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.8642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3684,390,0 chrVII 258958 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=151;Dels=0.00;FS=3.001;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-1.319;QD=24.06;ReadPosRankSum=2.384;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3633,399,0 chrVII 259155 . A G 2416 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=16.44;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2449,276,0 chrVII 259167 . C T 2077 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.7469;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=14.42;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2110,234,0 chrVII 259222 . C T 2683 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.5150;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=16.56;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2716,291,0 chrVII 259336 . A G 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=4.040;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.289;QD=22.27;ReadPosRankSum=1.713;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4008,450,0 chrVII 259380 . T C 3947.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=22.55;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3947,456,0 chrVII 259491 . G T 4065.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.3117;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.77;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:4065,447,0 chrVII 259594 . G A 3490.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.2741;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.52;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3490,378,0 chrVII 259611 . C A 3289.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.53;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3289,354,0 chrVII 260137 . C T 2599 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.7642;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.41;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2632,276,0 chrVII 260198 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.36;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3271,366,0 chrVII 260886 . G A 5678.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-3.120e+03 GT:AD:DP:GQ:PL 1/1:0,229:234:99:5678,615,0 chrVII 261126 . C T 3323.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3323,369,0 chrVII 261404 . C T 2320 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.92;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2353,249,0 chrVII 261737 . G T 3649.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.17;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3649,384,0 chrVII 261844 . A T 5040.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.89;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5040,543,0 chrVII 261942 . T C 4576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.939;DP=215;Dels=0.00;FS=2.571;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-0.509;QD=21.28;ReadPosRankSum=1.724;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:3,212:215:99:4576,502,0 chrVII 261966 . T C 4616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.969;DP=228;Dels=0.00;FS=5.636;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.296;QD=20.25;ReadPosRankSum=2.915;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:3,221:228:99:4616,522,0 chrVII 262041 . T C 5268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=243;Dels=0.00;FS=2.989;HaplotypeScore=26.0518;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.484;QD=21.68;ReadPosRankSum=2.429;SB=-2.819e+03 GT:AD:DP:GQ:PL 1/1:2,239:243:99:5268,597,0 chrVII 262200 . A T 6071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=262;Dels=0.00;FS=5.993;HaplotypeScore=23.1988;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.965;QD=23.17;ReadPosRankSum=2.918;SB=-2.953e+03 GT:AD:DP:GQ:PL 1/1:3,258:262:99:6071,658,0 chrVII 262283 . T C 5634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=253;Dels=0.00;FS=4.075;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.965;QD=22.27;ReadPosRankSum=1.718;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:5634,636,0 chrVII 262340 . G T 5685.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=14.3908;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.95;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:0,254:259:99:5685,607,0 chrVII 262451 . T A 4848.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.36;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4848,522,0 chrVII 262671 . A C 3614.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.17;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3614,411,0 chrVII 262734 . A T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.0279;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.07;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3509,372,0 chrVII 262798 . G C 3687.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.04;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3687,414,0 chrVII 262948 . G A 3045 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=20.86;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3078,330,0 chrVII 262950 . T A 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=152;Dels=0.00;FS=6.402;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=0.525;QD=20.93;ReadPosRankSum=2.369;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3214,345,0 chrVII 262977 . C T 3102 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.27;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3135,336,0 chrVII 263121 . A C 3714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=160;Dels=0.00;FS=6.442;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.270;QD=23.21;ReadPosRankSum=2.326;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3714,414,0 chrVII 263233 . G T 4123.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.9625;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.53;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4123,447,0 chrVII 263307 . C T 4551.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4551,484,0 chrVII 263382 . C T 4492.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.77;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4492,483,0 chrVII 263421 . T C 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=183;Dels=0.00;FS=3.382;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.123;QD=21.93;ReadPosRankSum=1.713;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4014,444,0 chrVII 263571 . A G 3843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=171;Dels=0.00;FS=5.572;HaplotypeScore=11.2610;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.853;QD=22.47;ReadPosRankSum=2.912;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:3843,426,0 chrVII 263642 . A T 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=157;Dels=0.00;FS=3.267;HaplotypeScore=14.3697;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.055;QD=23.48;ReadPosRankSum=1.710;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3686,402,0 chrVII 263678 . G A 4175.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.15;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4175,447,0 chrVII 263851 . C T 3464.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.52;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3464,366,0 chrVII 263909 . C T 3114 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.24;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3147,336,0 chrVII 263981 . C T 3315.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=14.1967;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.51;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3315,354,0 chrVII 264114 . C A 2125 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2158,234,0 chrVII 264177 . G T 2310 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.43;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2343,252,0 chrVII 264286 . A C 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=5.046;HaplotypeScore=10.2737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.668;QD=23.81;ReadPosRankSum=1.668;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,162:166:99:3953,447,0 chrVII 264360 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.2567;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3426,372,0 chrVII 264482 . G T 3769.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3769,414,0 chrVII 264652 . C T 4221.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4221,450,0 chrVII 265003 . G A 3102 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.69;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3135,348,0 chrVII 265218 . T C 2374 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2407,264,0 chrVII 265436 . C T 2853 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2886,318,0 chrVII 265689 . C G 3606.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3606,411,0 chrVII 266074 . G A 2898 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=20.41;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2931,312,0 chrVII 266080 . T A 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=143;Dels=0.00;FS=2.947;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=-1.487;QD=18.10;ReadPosRankSum=2.364;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2622,276,0 chrVII 266087 . T C 2482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;MQRankSum=-0.211;QD=16.77;ReadPosRankSum=1.709;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2515,285,0 chrVII 266369 . G C 4168.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.8700;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.27;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,192:196:99:4168,474,0 chrVII 266948 . G A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.07;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3659,396,0 chrVII 267395 . T G 274.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.392;DP=129;Dels=0.00;FS=199.397;HaplotypeScore=7.5012;MLEAC=1;MLEAF=0.500;MQ=57.45;MQ0=0;MQRankSum=0.706;QD=2.12;ReadPosRankSum=-7.070;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,52:129:99:304,0,1453 chrVII 267458 . C T 3314.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.5840;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.95;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3314,348,0 chrVII 267480 . G A 3545.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.48;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3545,384,0 chrVII 267717 . T G 3702.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.3281;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.28;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3702,414,0 chrVII 267935 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.85;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3330,357,0 chrVII 268323 . C G 3097 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.51;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3130,354,0 chrVII 268551 . A G 2860 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.00;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2893,324,0 chrVII 268566 . G A 2852 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.77;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2885,321,0 chrVII 269022 . T A 1160 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=12.89;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1193,129,0 chrVII 269104 . T A 1856 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.17;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1889,207,0 chrVII 269505 . T C 5172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=234;Dels=0.00;FS=7.548;HaplotypeScore=11.5956;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.637;QD=22.10;ReadPosRankSum=2.334;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:2,232:234:99:5172,570,0 chrVII 269626 . G A 5851.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.18;SB=-3.057e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5851,645,0 chrVII 269881 . A G 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.002;QD=20.38;ReadPosRankSum=1.698;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:1,203:206:99:4199,489,0 chrVII 269908 . C G 4743.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.5542;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.89;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,222:227:99:4743,543,0 chrVII 270001 . C T 4886.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.6857;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.27;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4886,520,0 chrVII 270046 . A G 3883.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.32;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3883,441,0 chrVII 270136 . T C 2692 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8341;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.23;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2725,303,0 chrVII 270346 . A G 2731 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.2796;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;QD=22.76;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2764,306,0 chrVII 270491 . A G 3361.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.4919;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.26;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3361,390,0 chrVII 270688 . T C 3790.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.0321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.69;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3790,429,0 chrVII 270975 . T C 4916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=18.8624;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.643;QD=22.97;ReadPosRankSum=2.426;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:2,211:214:99:4916,555,0 chrVII 271422 . T C 8410.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.379;DP=394;Dels=0.00;FS=24.460;HaplotypeScore=42.2321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.107;QD=21.35;ReadPosRankSum=4.470;SB=-4.172e+03 GT:AD:DP:GQ:PL 1/1:7,385:394:99:8410,957,0 chrVII 271772 . C T 15035.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.722;DP=677;Dels=0.00;FS=0.000;HaplotypeScore=53.0837;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.296;QD=22.21;ReadPosRankSum=-0.073;SB=-7.576e+03 GT:AD:DP:GQ:PL 1/1:1,671:677:99:15035,1610,0 chrVII 272144 . G A 4674.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=18.7502;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.70;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,264:264:99:4674,507,0 chrVII 272666 . A G 7032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=303;Dels=0.00;FS=7.966;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.524;QD=23.21;ReadPosRankSum=2.417;SB=-3.104e+03 GT:AD:DP:GQ:PL 1/1:2,300:303:99:7032,789,0 chrVII 272906 . T G 5491.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=17.5302;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.28;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,256:258:99:5491,621,0 chrVII 273059 . C A 5073.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=17.8812;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.15;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5073,546,0 chrVII 273125 . C T 4901.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.14;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4901,525,0 chrVII 273251 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=171;Dels=0.00;FS=2.689;HaplotypeScore=9.7725;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.171;QD=21.01;ReadPosRankSum=2.392;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3593,402,0 chrVII 273347 . T C 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=3.477;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.089;QD=22.03;ReadPosRankSum=1.711;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3701,414,0 chrVII 273408 . T C 4083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=21.6005;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.405;QD=22.68;ReadPosRankSum=1.713;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4083,462,0 chrVII 273503 . A G 5409.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.3097;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5409,609,0 chrVII 273687 . A G 4994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=265;Dels=0.00;FS=2.907;HaplotypeScore=9.3318;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-0.516;QD=18.85;ReadPosRankSum=2.412;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:2,262:265:99:4994,576,0 chrVII 273824 . G A 5108.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=22.40;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5108,547,0 chrVII 273860 . C A 4230.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=19.05;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4230,462,0 chrVII 273866 . C T 3984.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=19.15;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:3984,441,0 chrVII 273899 . A G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.160;DP=188;Dels=0.00;FS=14.239;HaplotypeScore=3.7487;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;MQRankSum=-0.904;QD=15.27;ReadPosRankSum=4.152;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:6,182:188:99:2903,321,0 chrVII 273905 . G A 2977 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=14.88;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3010,324,0 chrVII 274130 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.1435;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=22.56;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4060,450,0 chrVII 274361 . C T 2285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=5.017;HaplotypeScore=117.4285;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=0.041;QD=17.85;ReadPosRankSum=0.777;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2318,273,0 chrVII 274411 . T A 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.143;DP=128;Dels=0.00;FS=1.315;HaplotypeScore=305.7464;MLEAC=1;MLEAF=0.500;MQ=51.87;MQ0=0;MQRankSum=-0.067;QD=0.21;ReadPosRankSum=-4.919;SB=-7.801e+01 GT:AD:DP:GQ:PL 0/1:118,10:128:57:57,0,164 chrVII 274448 . A C 1891 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.7020;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=16.03;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1924,216,0 chrVII 274486 . T C 1518 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.29;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1551,171,0 chrVII 274522 . C T 1106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=58.8388;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=1.235;QD=16.76;ReadPosRankSum=2.374;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:2,63:66:99:1139,120,0 chrVII 274544 . C T 1021 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=18.23;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1054,111,0 chrVII 274741 . T A 390 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=18.57;SB=-6.790e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:45:423,45,0 chrVII 274742 . T A 389 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=18.52;SB=-6.790e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:45:422,45,0 chrVII 274754 . T G 381 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.66;MQ0=0;MQRankSum=-1.459;QD=10.03;ReadPosRankSum=1.641;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:1,37:38:45:414,45,0 chrVII 274764 . A G 536 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=11.17;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,46:48:63:569,63,0 chrVII 274882 . C G 2512 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.39;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2545,288,0 chrVII 275009 . T C 4111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=23.9993;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.053;QD=20.87;ReadPosRankSum=1.714;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4111,465,0 chrVII 275322 . C T 3670.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.68;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3670,390,0 chrVII 275428 . A G 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=-0.233;QD=20.96;ReadPosRankSum=-0.209;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2988,348,0 chrVII 275443 . A G 2831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=0.560;QD=21.78;ReadPosRankSum=1.679;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2864,321,0 chrVII 275467 . C T 2509 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=20.57;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2542,279,0 chrVII 275482 . A G 2338 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5666;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=19.81;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2371,267,0 chrVII 275692 . C T 1914 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=18.95;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1947,219,0 chrVII 275701 . C T 2008 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=18.09;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2041,228,0 chrVII 275706 . T C 1937 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=43.64;MQ0=0;QD=17.61;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1970,219,0 chrVII 275734 . G A 1940 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=17.32;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1973,210,0 chrVII 275758 . A G 1924 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=16.44;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1957,219,0 chrVII 275782 . T C 2348 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=19.57;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2381,264,0 chrVII 275819 . C G 2398 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.67;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2431,270,0 chrVII 276076 . C T 3672.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.00;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3672,399,0 chrVII 276180 . G A 3163 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=22.92;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3196,342,0 chrVII 276361 . G A 3454.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=22.72;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3454,369,0 chrVII 276379 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=20.02;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3156,354,0 chrVII 276429 . A G 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=-1.469;QD=18.59;ReadPosRankSum=1.710;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:2989,336,0 chrVII 276433 . A G 2784 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=18.08;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2817,318,0 chrVII 276488 . G T 3020 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.54;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3053,336,0 chrVII 276544 . T G 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.8653;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=1.497;QD=22.46;ReadPosRankSum=1.711;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3638,405,0 chrVII 276586 . T C 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=3.462;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-0.021;QD=23.05;ReadPosRankSum=1.689;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3757,426,0 chrVII 276694 . G A 3406.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.2655;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.29;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3406,363,0 chrVII 276850 . G C 3761.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.01;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.37;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3761,420,0 chrVII 276866 . T G 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=179;Dels=0.00;FS=5.801;HaplotypeScore=10.3528;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-0.949;QD=20.31;ReadPosRankSum=2.950;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:3635,402,0 chrVII 276987 . A C 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=162;Dels=0.00;FS=3.024;HaplotypeScore=8.9509;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.557;QD=23.26;ReadPosRankSum=2.389;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3768,420,0 chrVII 277086 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.67;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3261,351,0 chrVII 277224 . G C 2733 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.2150;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.52;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2766,309,0 chrVII 277229 . A C 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=6.849;HaplotypeScore=4.8625;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=1.462;QD=20.46;ReadPosRankSum=2.411;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2632,294,0 chrVII 277287 . T C 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.0102;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.332;QD=19.57;ReadPosRankSum=1.679;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2577,297,0 chrVII 278171 . A G 5837.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=22.7056;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.77;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,279:281:99:5837,651,0 chrVII 278633 . A G 1637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.559;QD=20.46;ReadPosRankSum=1.689;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1670,189,0 chrVII 278853 . A G 1754 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.39;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1787,213,0 chrVII 278904 . G A 1775 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.91;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1808,189,0 chrVII 278917 . T A 1519 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.53;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1552,168,0 chrVII 279123 . A G 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=175;Dels=0.00;FS=9.727;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.509;QD=22.90;ReadPosRankSum=2.833;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:4008,450,0 chrVII 279435 . C T 4113.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.3459;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=21.31;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4113,441,0 chrVII 279477 . T C 3851.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.76;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3851,447,0 chrVII 279720 . A G 4219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=4.566;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=0.112;QD=22.44;ReadPosRankSum=1.695;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:4219,471,0 chrVII 279936 . C T 7964.01 filter AC=2;AF=1.00;AN=2;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=22.00;SB=-3.428e+03 GT:AD:DP:GQ:PL 1/1:0,360:362:99:7964,859,0 chrVII 279942 . G A 7642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;MQRankSum=-0.464;QD=21.65;ReadPosRankSum=1.702;SB=-3.258e+03 GT:AD:DP:GQ:PL 1/1:1,350:353:99:7642,823,0 chrVII 280080 . A C 120.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.184;DP=79;Dels=0.00;FS=14.145;HaplotypeScore=118.9908;MLEAC=2;MLEAF=1.00;MQ=40.98;MQ0=0;MQRankSum=-2.786;QD=1.52;ReadPosRankSum=4.339;SB=-8.201e+02 GT:AD:DP:GQ:PL 1/1:7,72:79:18:153,18,0 chrVII 280082 . G C 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.279;DP=69;Dels=0.00;FS=42.764;HaplotypeScore=57.0598;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=0;MQRankSum=4.900;QD=0.20;ReadPosRankSum=-4.988;SB=1.24 GT:AD:DP:GQ:PL 1/1:57,10:69:6:45,6,0 chrVII 280120 . T G 60.14 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.378;DP=106;Dels=0.00;FS=4.531;HaplotypeScore=40.7414;MLEAC=1;MLEAF=0.500;MQ=29.33;MQ0=0;MQRankSum=0.110;QD=0.57;ReadPosRankSum=-1.778;SB=-1.101e+02 GT:AD:DP:GQ:PL 0/1:70,36:106:12:90,0,12 chrVII 280125 . T A 53.19 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.751;DP=99;Dels=0.00;FS=3.220;HaplotypeScore=164.7537;MLEAC=1;MLEAF=0.500;MQ=29.35;MQ0=0;MQRankSum=-1.051;QD=0.54;ReadPosRankSum=5.411;SB=-1.732e+02 GT:AD:DP:GQ:PL 1/1:17,35:99:9:85,9,0 chrVII 280126 . T A 65.18 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.675;DP=98;Dels=0.00;FS=7.644;HaplotypeScore=160.5253;MLEAC=1;MLEAF=0.500;MQ=29.36;MQ0=0;MQRankSum=0.210;QD=0.67;ReadPosRankSum=-3.621;SB=-1.312e+02 GT:AD:DP:GQ:PL 0/1:61,37:98:11:95,0,11 chrVII 280134 . C A 320.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=9.896;DP=179;Dels=0.00;FS=8.183;HaplotypeScore=135.3032;MLEAC=1;MLEAF=0.500;MQ=29.09;MQ0=0;MQRankSum=0.999;QD=1.79;ReadPosRankSum=0.153;SB=-5.140e+02 GT:AD:DP:GQ:PL 0/1:90,88:179:70:350,0,70 chrVII 280135 . T A 319.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;DP=180;Dels=0.00;FS=8.150;HaplotypeScore=138.2028;MLEAC=1;MLEAF=0.500;MQ=29.35;MQ0=0;MQRankSum=-0.259;QD=1.77;ReadPosRankSum=0.290;SB=-4.970e+02 GT:AD:DP:GQ:PL 0/1:92,88:180:76:349,0,76 chrVII 280152 . A T 432.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;DP=324;Dels=0.00;FS=1.954;HaplotypeScore=60.1582;MLEAC=1;MLEAF=0.500;MQ=29.38;MQ0=0;MQRankSum=0.224;QD=1.33;ReadPosRankSum=-0.692;SB=-1.299e+03 GT:AD:DP:GQ:PL 0/1:159,164:323:99:462,0,812 chrVII 280153 . G T 402.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.348;DP=333;Dels=0.00;FS=1.910;HaplotypeScore=59.3260;MLEAC=1;MLEAF=0.500;MQ=29.37;MQ0=0;MQRankSum=-1.088;QD=1.21;ReadPosRankSum=0.343;SB=-1.295e+03 GT:AD:DP:GQ:PL 0/1:168,164:332:99:432,0,1008 chrVII 280158 . C T 466.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=11.859;DP=348;Dels=0.00;FS=0.000;HaplotypeScore=69.1850;MLEAC=1;MLEAF=0.500;MQ=29.35;MQ0=0;MQRankSum=0.235;QD=1.34;ReadPosRankSum=3.370;SB=-9.720e+02 GT:AD:DP:GQ:PL 0/1:213,135:348:99:496,0,1100 chrVII 280179 . C T 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.158;DP=453;Dels=0.00;FS=4.509;HaplotypeScore=892.6477;MLEAC=1;MLEAF=0.500;MQ=33.31;MQ0=0;MQRankSum=-0.972;QD=0.10;ReadPosRankSum=-7.858;SB=-5.070e+02 GT:AD:DP:GQ:PL 0/1:343,110:453:77:77,0,239 chrVII 280203 . C T 1126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.418;DP=500;Dels=0.00;FS=3.148;HaplotypeScore=9.2135;MLEAC=1;MLEAF=0.500;MQ=38.51;MQ0=0;MQRankSum=-5.452;QD=2.25;ReadPosRankSum=-11.873;SB=-1.096e+03 GT:AD:DP:GQ:PL 0/1:333,167:500:99:1156,0,2698 chrVII 280546 . T G 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=200;Dels=0.01;FS=0.000;HaplotypeScore=17.9048;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.262;QD=20.05;ReadPosRankSum=1.375;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:2,190:198:99:4010,444,0 chrVII 280575 . A G 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=169;Dels=0.00;FS=5.336;HaplotypeScore=14.0979;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.120;QD=20.11;ReadPosRankSum=2.922;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:3,165:169:99:3398,387,0 chrVII 280634 . A T 3023 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.6439;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=19.63;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3056,327,0 chrVII 280915 . A G 4006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=188;Dels=0.00;FS=5.764;HaplotypeScore=19.0063;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.053;QD=21.31;ReadPosRankSum=2.931;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:4006,447,0 chrVII 281206 . A G 2712 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=138;Dels=0.00;FS=3.038;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;MQRankSum=-1.363;QD=19.65;ReadPosRankSum=2.378;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2745,312,0 chrVII 281209 . G A 2630 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=21.38;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2663,291,0 chrVII 281210 . G A 2688 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=22.03;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2721,291,0 chrVII 281269 . G A 2530 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=19.92;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2563,270,0 chrVII 281283 . C G 2077 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=16.89;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2110,237,0 chrVII 281302 . A T 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=126;Dels=0.00;FS=3.844;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=-1.677;QD=18.40;ReadPosRankSum=1.677;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2351,249,0 chrVII 281475 . C T 2054 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=21.18;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2087,237,0 chrVII 281515 . G T 1962 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=22.81;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1995,222,0 chrVII 281690 . A G 2716 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.92;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2749,303,0 chrVII 281913 . A G 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.724;QD=20.94;ReadPosRankSum=1.711;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3476,396,0 chrVII 282117 . A G 4807.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.16;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4807,531,0 chrVII 282222 . A G 5170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.372;QD=21.19;ReadPosRankSum=1.718;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:1,241:244:99:5170,588,0 chrVII 282456 . G C 3391.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.8263;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.55;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3391,390,0 chrVII 282702 . A G 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.849;DP=151;Dels=0.00;FS=3.159;HaplotypeScore=6.4826;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.453;QD=22.27;ReadPosRankSum=1.523;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3363,365,0 chrVII 283173 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.51;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3316,345,0 chrVII 283212 . C T 3542.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.43;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3542,375,0 chrVII 283332 . T C 5337.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.91;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5337,600,0 chrVII 283431 . G A 4236.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.8791;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.66;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4236,462,0 chrVII 283596 . A G 3093 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.6493;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.22;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3126,348,0 chrVII 283608 . C T 3028 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.6483;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.79;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3061,327,0 chrVII 283959 . C A 2626 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.64;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2659,291,0 chrVII 284172 . G A 2319 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=23.66;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2352,252,0 chrVII 284212 . C G 2439 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.58;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2472,279,0 chrVII 284273 . A G 3076 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.45;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3109,363,0 chrVII 284354 . T C 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.135;QD=23.92;ReadPosRankSum=1.613;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3469,390,0 chrVII 284577 . G A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.71;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3565,390,0 chrVII 284597 . C A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3959;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.59;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3347,366,0 chrVII 284633 . A G 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.171;DP=141;Dels=0.00;FS=15.579;HaplotypeScore=13.9189;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.782;QD=20.11;ReadPosRankSum=3.396;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:4,136:141:99:2869,333,0 chrVII 284675 . G A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.04;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3294,366,0 chrVII 284759 . C A 3152 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.35;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3185,345,0 chrVII 284855 . A G 3882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.5602;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.436;QD=23.67;ReadPosRankSum=1.711;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3882,441,0 chrVII 284996 . G A 2673 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2706,291,0 chrVII 285065 . C T 3321.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.72;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3321,372,0 chrVII 285545 . C A 2830 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=22.46;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2863,309,0 chrVII 285548 . C T 2677 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=20.75;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2710,297,0 chrVII 285833 . G A 2869 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.7596;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.07;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2902,312,0 chrVII 285920 . T C 1810 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.91;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1843,207,0 chrVII 286047 . C T 1921 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.44;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1954,213,0 chrVII 286154 . G C 2011 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=22.60;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2044,225,0 chrVII 286164 . C G 1956 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=21.73;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1989,225,0 chrVII 286192 . G A 1419 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=18.43;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1452,159,0 chrVII 286216 . T C 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.151;QD=19.93;ReadPosRankSum=1.694;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1867,204,0 chrVII 286520 . G A 2904 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.34;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2937,321,0 chrVII 286558 . A T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=24.37;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3461,366,0 chrVII 286585 . A T 2986 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.96;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3019,324,0 chrVII 286600 . C T 2804 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.61;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2837,300,0 chrVII 286632 . A G 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=5.027;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-1.361;QD=19.93;ReadPosRankSum=1.683;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2843,315,0 chrVII 286871 . A T 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=1.440;QD=22.72;ReadPosRankSum=1.665;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3521,378,0 chrVII 286921 . G A 4527.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4527,478,0 chrVII 287108 . T C 3554.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=23.23;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3554,396,0 chrVII 287146 . G A 4207.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=25.19;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4207,453,0 chrVII 287195 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3789;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.95;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3512,393,0 chrVII 287266 . G A 3592.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.32;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3592,390,0 chrVII 287340 . G A 2984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=144;Dels=0.00;FS=4.102;HaplotypeScore=117.7752;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.722;QD=20.72;ReadPosRankSum=1.203;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3017,309,0 chrVII 287460 . T C 2459 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=19.83;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2492,285,0 chrVII 287520 . T C 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=127;Dels=0.00;FS=6.104;HaplotypeScore=8.6917;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.722;QD=21.79;ReadPosRankSum=2.850;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2800,312,0 chrVII 287579 . C T 2744 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=24.95;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2777,291,0 chrVII 287631 . G A 2731 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.02;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2764,297,0 chrVII 287675 . G A 3490.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.4241;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.96;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3490,381,0 chrVII 287846 . G A 2874 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.7082;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.99;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2907,315,0 chrVII 287936 . G T 3590.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=24.09;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3590,387,0 chrVII 288017 . T C 2000 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.51;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2033,231,0 chrVII 288097 . T G 3152 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.35;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3185,354,0 chrVII 288473 . G A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.85;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3405,360,0 chrVII 288616 . C T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.52;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3310,369,0 chrVII 288796 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.56;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2850,309,0 chrVII 288805 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=19.23;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2879,309,0 chrVII 289212 . T C 4242.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4242,483,0 chrVII 289440 . T C 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=129;Dels=0.00;FS=5.989;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.524;QD=22.99;ReadPosRankSum=2.774;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2999,330,0 chrVII 289648 . A T 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=3.209;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-1.215;QD=22.93;ReadPosRankSum=1.680;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3128,333,0 chrVII 289886 . A C 2888 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=22.22;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2921,327,0 chrVII 289892 . A G 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-0.499;QD=22.51;ReadPosRankSum=1.680;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3004,336,0 chrVII 290117 . G A 3983.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=20.1111;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.44;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3983,426,0 chrVII 290162 . G C 4148.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.7084;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.92;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4148,471,0 chrVII 290465 . C T 3508.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=12.9412;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3508,375,0 chrVII 290846 . T C 5559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=252;Dels=0.00;FS=3.224;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.055;QD=22.06;ReadPosRankSum=1.704;SB=-2.948e+03 GT:AD:DP:GQ:PL 1/1:1,249:252:99:5559,630,0 chrVII 290891 . T C 6333.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=18.2569;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.46;SB=-3.185e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:6333,714,0 chrVII 291643 . A G 2232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.165;DP=121;Dels=0.00;FS=2.832;HaplotypeScore=85.9996;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.112;QD=18.45;ReadPosRankSum=2.409;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2265,255,0 chrVII 291664 . C T 2265 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9450;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=18.41;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2298,255,0 chrVII 291794 . A G 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=4.249;HaplotypeScore=6.9084;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.897;QD=25.26;ReadPosRankSum=1.708;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3562,396,0 chrVII 291925 . T C 3571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=154;Dels=0.00;FS=3.003;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=1.668;QD=23.19;ReadPosRankSum=2.370;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3571,399,0 chrVII 291992 . G A 3751.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.30;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3751,411,0 chrVII 292224 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3308,381,0 chrVII 292374 . T G 3830.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3830,426,0 chrVII 292839 . G A 4273.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.73;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4273,465,0 chrVII 293305 . A G 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.960;QD=23.20;ReadPosRankSum=1.662;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3457,387,0 chrVII 294227 . T C 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.667;DP=143;Dels=0.00;FS=5.482;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.156;QD=23.05;ReadPosRankSum=2.908;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:3296,363,0 chrVII 294308 . C T 4999.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4999,538,0 chrVII 294368 . C T 4542.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.16;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4542,481,0 chrVII 294404 . T C 4239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.2753;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-1.697;QD=21.63;ReadPosRankSum=1.644;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4239,474,0 chrVII 294423 . T C 4265.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.50;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4265,480,0 chrVII 294462 . A G 4716.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=13.3365;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.42;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4716,531,0 chrVII 294757 . A C 4984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=214;Dels=0.00;FS=3.646;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-1.293;QD=23.29;ReadPosRankSum=1.716;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4984,546,0 chrVII 294779 . G A 5340.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.82;SB=-3.083e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5340,565,0 chrVII 295088 . G A 4003.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.9747;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.52;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4003,435,0 chrVII 295232 . T C 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.381;QD=22.03;ReadPosRankSum=1.708;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3139,348,0 chrVII 295562 . G A 2127 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.93;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2160,231,0 chrVII 295605 . C G 2000 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.0622;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.00;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2033,231,0 chrVII 295612 . T C 1827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=96;Dels=0.00;FS=12.368;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=-0.215;QD=19.03;ReadPosRankSum=2.925;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:3,91:96:99:1860,207,0 chrVII 295816 . G A 2959 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.25;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2992,336,0 chrVII 296120 . G A 4193.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.0676;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4193,453,0 chrVII 296162 . T C 4521.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4521,504,0 chrVII 296534 . A G 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=147;Dels=0.00;FS=3.006;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.594;QD=15.56;ReadPosRankSum=2.349;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2320,261,0 chrVII 296999 . A G 2598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.585;QD=21.83;ReadPosRankSum=1.644;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2631,300,0 chrVII 297102 . G T 4198.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=16.1978;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.27;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4198,450,0 chrVII 297191 . A C 3304.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.43;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3304,372,0 chrVII 297260 . A G 3856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=171;Dels=0.00;FS=3.062;HaplotypeScore=8.1003;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.550;QD=22.55;ReadPosRankSum=1.589;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3856,438,0 chrVII 297365 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.34;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3500,387,0 chrVII 297386 . G C 3159 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=19.15;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3192,357,0 chrVII 297805 . A C 3795.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.56;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3795,423,0 chrVII 297968 . G C 2524 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2557,282,0 chrVII 299192 . T C 4252.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.6406;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.15;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4252,483,0 chrVII 299630 . C G 3979.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3979,441,0 chrVII 299945 . T A 4287.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.43;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4287,480,0 chrVII 300574 . T C 2090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=95;Dels=0.00;FS=3.649;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.112;QD=22.00;ReadPosRankSum=1.623;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2123,243,0 chrVII 300865 . A G 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=137;Dels=0.00;FS=11.796;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-1.449;QD=22.64;ReadPosRankSum=2.949;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:3135,354,0 chrVII 300904 . T C 3449.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.2886;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.69;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3449,390,0 chrVII 300910 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.08;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3488,387,0 chrVII 301031 . T C 3897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.8369;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.682;QD=23.48;ReadPosRankSum=1.690;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3897,435,0 chrVII 301132 . G C 3277.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4372;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.99;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3277,369,0 chrVII 301260 . G A 3781.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.08;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3781,402,0 chrVII 301405 . A G 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.190;QD=20.94;ReadPosRankSum=1.709;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3111,354,0 chrVII 301525 . T A 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.266;DP=128;Dels=0.00;FS=8.496;HaplotypeScore=113.1842;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-0.062;QD=20.46;ReadPosRankSum=3.348;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:4,124:128:99:2652,288,0 chrVII 301606 . A G 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=114;Dels=0.00;FS=6.035;HaplotypeScore=12.3090;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=-1.947;QD=18.34;ReadPosRankSum=2.939;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2124,243,0 chrVII 301680 . T A 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=3.070;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.329;QD=23.63;ReadPosRankSum=1.685;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3450,372,0 chrVII 301819 . G T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.63;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3571,381,0 chrVII 302104 . A G 2858 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.4866;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.58;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2891,336,0 chrVII 302319 . A G 2716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.525;QD=20.58;ReadPosRankSum=1.601;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2749,303,0 chrVII 302442 . A G 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=139;Dels=0.00;FS=6.575;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.419;QD=22.66;ReadPosRankSum=2.271;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3183,357,0 chrVII 302788 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.61;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3268,348,0 chrVII 303433 . A C 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.715;QD=21.28;ReadPosRankSum=1.708;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3076,339,0 chrVII 303438 . A T 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.217;QD=20.95;ReadPosRankSum=1.660;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3050,342,0 chrVII 303497 . T C 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.824;QD=20.91;ReadPosRankSum=1.708;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3107,354,0 chrVII 303645 . T C 4347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.9121;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.717;QD=22.88;ReadPosRankSum=2.346;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4347,486,0 chrVII 303745 . T A 4234.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.01;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4234,453,0 chrVII 303887 . C T 4847.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.8481;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.83;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4847,517,0 chrVII 303997 . T C 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=185;Dels=0.00;FS=6.385;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.409;QD=21.24;ReadPosRankSum=2.423;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:3929,441,0 chrVII 304012 . A G 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.098;QD=20.66;ReadPosRankSum=1.712;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3656,411,0 chrVII 304140 . A G 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=154;Dels=0.00;FS=2.587;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.033;QD=21.30;ReadPosRankSum=2.915;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:3,150:154:99:3280,375,0 chrVII 304214 . T A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.3698;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.67;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3290,351,0 chrVII 304247 . A G 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=146;Dels=0.00;FS=7.480;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=1.035;QD=21.86;ReadPosRankSum=2.416;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3224,366,0 chrVII 304566 . T C 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.331;QD=22.15;ReadPosRankSum=1.711;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3654,405,0 chrVII 304609 . A T 3085 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.16;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3118,339,0 chrVII 304611 . T C 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=161;Dels=0.00;FS=2.596;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=-0.023;QD=18.53;ReadPosRankSum=2.388;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3016,336,0 chrVII 305050 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.92;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2774,312,0 chrVII 305095 . A G 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.832;QD=22.52;ReadPosRankSum=1.650;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2893,318,0 chrVII 305110 . T C 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=144;Dels=0.00;FS=3.259;HaplotypeScore=4.9417;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-1.299;QD=21.93;ReadPosRankSum=1.660;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3191,354,0 chrVII 305143 . C A 2882 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4896;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.73;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2915,321,0 chrVII 305233 . A G 2625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=115;Dels=0.00;FS=4.298;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.487;QD=22.83;ReadPosRankSum=1.671;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2658,306,0 chrVII 305479 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=0.617;QD=22.94;ReadPosRankSum=1.713;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4060,453,0 chrVII 305542 . A T 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=161;Dels=0.00;FS=9.195;HaplotypeScore=8.9199;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.856;QD=21.29;ReadPosRankSum=2.856;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3428,375,0 chrVII 305553 . A T 3340.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.55;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3340,354,0 chrVII 305644 . G A 4649.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.1973;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.09;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4649,501,0 chrVII 305680 . T G 5020.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.7103;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.90;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5020,555,0 chrVII 305743 . G A 4461.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=16.4916;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.24;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4461,483,0 chrVII 305802 . G A 4709.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.4521;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.65;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4709,502,0 chrVII 305941 . T C 4565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.081;DP=209;Dels=0.00;FS=9.109;HaplotypeScore=13.2958;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.308;QD=21.84;ReadPosRankSum=3.384;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:4,203:209:99:4565,507,0 chrVII 306050 . A G 4991.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.4223;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.99;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4991,564,0 chrVII 306133 . A G 5393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=239;Dels=0.00;FS=3.141;HaplotypeScore=11.3242;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-1.557;QD=22.56;ReadPosRankSum=1.674;SB=-2.923e+03 GT:AD:DP:GQ:PL 1/1:1,236:239:99:5393,600,0 chrVII 306325 . G A 4924.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.08;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4924,537,0 chrVII 306341 . T G 4616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=215;Dels=0.00;FS=6.679;HaplotypeScore=10.8470;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.744;QD=21.47;ReadPosRankSum=2.426;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:2,211:215:99:4616,525,0 chrVII 306650 . C T 6313.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=13.2949;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.19;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:6313,676,0 chrVII 306793 . T C 6301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=295;Dels=0.00;FS=3.115;HaplotypeScore=16.8176;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.708;QD=21.36;ReadPosRankSum=1.626;SB=-3.531e+03 GT:AD:DP:GQ:PL 1/1:1,292:295:99:6301,729,0 chrVII 307064 . C G 2389 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=85.8414;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=23.19;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2422,270,0 chrVII 307084 . C T 2067 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=21.76;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2100,237,0 chrVII 307499 . T C 3873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=169;Dels=0.00;FS=2.581;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.542;QD=22.92;ReadPosRankSum=2.935;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3873,438,0 chrVII 307742 . T C 4757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.250;DP=227;Dels=0.00;FS=15.062;HaplotypeScore=15.6864;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.790;QD=20.96;ReadPosRankSum=3.390;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:4,220:227:99:4757,543,0 chrVII 307808 . C T 5039.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=24.11;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5039,541,0 chrVII 307865 . T C 3863.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;QD=19.32;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3863,447,0 chrVII 307868 . C T 4048.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=20.44;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4048,444,0 chrVII 307883 . C A 3722.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=19.29;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3722,402,0 chrVII 308423 . C A 3008 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.49;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3041,324,0 chrVII 308438 . T C 2861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=3.193;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-0.142;QD=19.60;ReadPosRankSum=1.685;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2894,327,0 chrVII 308552 . T C 3830.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.6751;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.76;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3830,432,0 chrVII 308702 . C A 4061.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.03;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4061,435,0 chrVII 308778 . T A 2764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=3.160;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.644;QD=23.23;ReadPosRankSum=1.644;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2797,300,0 chrVII 308830 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.98;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3453,384,0 chrVII 308913 . C T 3373.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.6806;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.49;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3373,360,0 chrVII 309328 . C T 2979 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.23;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3012,321,0 chrVII 309574 . T C 3338.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.25;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3338,384,0 chrVII 310036 . C T 3830.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.80;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3830,423,0 chrVII 310194 . A T 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.671;DP=175;Dels=0.00;FS=5.252;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.295;QD=18.92;ReadPosRankSum=2.913;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:3311,375,0 chrVII 310410 . T C 3530.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.18;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3530,396,0 chrVII 310446 . C G 3740.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.52;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3740,417,0 chrVII 310627 . A G 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=143;Dels=0.00;FS=2.813;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.713;QD=22.50;ReadPosRankSum=2.415;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3250,366,0 chrVII 310701 . G A 2339 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.39;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2372,255,0 chrVII 310899 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.81;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2260,246,0 chrVII 310906 . T C 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-1.441;QD=19.87;ReadPosRankSum=1.635;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,106:109:99:2199,249,0 chrVII 311376 . C T 4485.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.64;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4485,492,0 chrVII 311762 . T C 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=148;Dels=0.00;FS=8.648;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.756;QD=24.11;ReadPosRankSum=2.416;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3569,402,0 chrVII 311795 . A T 2698 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.75;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2731,294,0 chrVII 312018 . A G 2215 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.72;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2248,264,0 chrVII 312110 . T A 2446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=105;Dels=0.00;FS=6.146;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.067;QD=23.30;ReadPosRankSum=2.379;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2479,261,0 chrVII 312743 . T G 2722 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.26;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2755,309,0 chrVII 312897 . C T 2490 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.17;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2523,267,0 chrVII 312947 . T C 2790 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.05;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2823,318,0 chrVII 312966 . C T 2776 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.73;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2809,306,0 chrVII 313053 . C T 3470.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3470,372,0 chrVII 313362 . T C 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.2787;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.152;QD=23.30;ReadPosRankSum=1.713;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4241,483,0 chrVII 313666 . C T 4138.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.25;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4138,447,0 chrVII 314032 . A G 4936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=205;Dels=0.00;FS=4.708;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.051;QD=24.08;ReadPosRankSum=1.715;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4936,555,0 chrVII 314187 . C T 4472.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.9907;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.66;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4472,480,0 chrVII 314274 . C T 3586.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3586,381,0 chrVII 314428 . T C 1995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=89;Dels=0.00;FS=3.024;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.378;QD=22.42;ReadPosRankSum=2.310;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:2,86:89:99:2028,228,0 chrVII 314617 . G A 3122 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3155,336,0 chrVII 315146 . C T 3860.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3860,423,0 chrVII 315200 . G A 3827.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=25.34;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3827,414,0 chrVII 315467 . G A 3079 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.2925;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=20.95;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3112,333,0 chrVII 315476 . T C 2960 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=19.60;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2993,339,0 chrVII 315504 . A G 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-0.074;QD=17.80;ReadPosRankSum=1.707;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:2561,285,0 chrVII 315509 . A G 2280 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.6912;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=16.29;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2313,264,0 chrVII 315746 . A G 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=132;Dels=0.00;FS=3.352;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=1.286;QD=21.78;ReadPosRankSum=1.706;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2908,321,0 chrVII 316175 . G A 6303.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=22.3183;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.53;SB=-3.038e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:6303,673,0 chrVII 316307 . G A 5208.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.4233;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.57;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5208,561,0 chrVII 316332 . A G 4385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.392;DP=204;Dels=0.00;FS=8.470;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-1.766;QD=21.50;ReadPosRankSum=3.392;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:4,200:204:99:4385,504,0 chrVII 316576 . C T 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=91;Dels=0.00;FS=2.862;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=1.453;QD=16.41;ReadPosRankSum=1.758;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:2,88:91:99:1526,186,0 chrVII 316577 . A C 1480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.056;DP=90;Dels=0.00;FS=5.544;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=1.326;QD=16.44;ReadPosRankSum=2.428;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:3,87:90:99:1513,186,0 chrVII 316588 . G A 1589 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.07;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1622,177,0 chrVII 316685 . G A 1559 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.36;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1592,177,0 chrVII 316731 . A T 1661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=0.337;QD=21.03;ReadPosRankSum=1.687;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1694,186,0 chrVII 316750 . C A 1569 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.20;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1602,174,0 chrVII 316827 . T C 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=98;Dels=0.00;FS=4.909;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.433;QD=22.47;ReadPosRankSum=1.047;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:1,95:98:99:2235,255,0 chrVII 316980 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.32;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2715,288,0 chrVII 317092 . A G 1932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=3.063;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.273;QD=23.28;ReadPosRankSum=1.690;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1965,222,0 chrVII 317124 . C T 2434 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2467,267,0 chrVII 317159 . A G 2459 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.7294;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2492,282,0 chrVII 317269 . A T 2489 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.05;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2522,270,0 chrVII 317405 . T C 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.536;DP=149;Dels=0.00;FS=7.930;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.754;QD=23.01;ReadPosRankSum=3.747;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:5,144:149:99:3429,381,0 chrVII 317746 . T C 4620.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.06;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4620,516,0 chrVII 318040 . G A 1820 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.16;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1853,207,0 chrVII 318105 . T A 2154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.326;QD=21.12;ReadPosRankSum=1.698;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2187,240,0 chrVII 318111 . G A 2194 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.30;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2227,237,0 chrVII 318334 . T C 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.948;DP=109;Dels=0.00;FS=2.902;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=2.176;QD=20.25;ReadPosRankSum=2.336;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2240,249,0 chrVII 318383 . C T 3007 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.1508;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=23.87;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3040,333,0 chrVII 318457 . G T 3531.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.7819;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.23;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3531,384,0 chrVII 318583 . T C 4258.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=22.41;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4258,474,0 chrVII 318591 . A G 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=3.128;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-1.121;QD=21.65;ReadPosRankSum=1.714;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4049,465,0 chrVII 318595 . T A 4259.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=23.02;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4259,450,0 chrVII 318614 . T C 3895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.383;DP=184;Dels=0.01;FS=13.910;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=0.129;QD=21.17;ReadPosRankSum=3.383;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:4,179:183:99:3895,435,0 chrVII 318802 . C T 3704.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=23.74;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3704,399,0 chrVII 318831 . A T 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=2.864;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=0.787;QD=24.13;ReadPosRankSum=2.383;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2711,291,0 chrVII 318860 . A G 2329 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=22.61;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2362,267,0 chrVII 318881 . C T 2116 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=22.75;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2149,225,0 chrVII 318909 . A G 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=3.208;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-1.694;QD=20.86;ReadPosRankSum=1.694;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1910,222,0 chrVII 319179 . C G 2870 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=23.72;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2903,327,0 chrVII 319247 . C T 3208 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;QD=24.30;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3241,345,0 chrVII 319369 . G C 3138 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.87;MQ0=0;QD=23.24;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3171,354,0 chrVII 319394 . A G 2390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.53;MQ0=0;MQRankSum=-1.770;QD=22.76;ReadPosRankSum=2.356;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2423,273,0 chrVII 319423 . T C 39.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=13.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:72,9,0 chrVII 319956 . A G 1999 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=19.79;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2032,237,0 chrVII 319966 . A C 1710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=4.508;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;MQRankSum=-0.036;QD=17.81;ReadPosRankSum=1.624;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1743,201,0 chrVII 319967 . A C 1711 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=17.64;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1744,204,0 chrVII 320008 . T G 1970 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=16.55;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2003,231,0 chrVII 320018 . C G 1881 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=16.36;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:1914,219,0 chrVII 320265 . A G 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=3.136;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.668;QD=23.89;ReadPosRankSum=1.707;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3345,372,0 chrVII 320514 . C T 3421.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=22.66;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3421,366,0 chrVII 320532 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.5854;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.68;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3032,339,0 chrVII 320597 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=20.3002;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=21.78;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:3593,417,0 chrVII 320756 . T C 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=168;Dels=0.00;FS=6.473;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-2.245;QD=20.01;ReadPosRankSum=2.376;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3361,375,0 chrVII 320760 . C T 3479.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.88;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3479,384,0 chrVII 320828 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=176;Dels=0.00;FS=3.516;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;MQRankSum=0.711;QD=20.52;ReadPosRankSum=1.712;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:1,172:176:99:3612,408,0 chrVII 320886 . T A 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DP=121;Dels=0.00;FS=10.897;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=0.875;QD=21.56;ReadPosRankSum=1.309;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2642,268,0 chrVII 320919 . C T 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.587;DP=115;Dels=0.00;FS=3.531;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.136;QD=21.67;ReadPosRankSum=-0.587;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2525,262,0 chrVII 321024 . G A 1804 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=15.16;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1837,195,0 chrVII 321054 . T A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=0;QD=0.21;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:6:54,6,0 chrVII 321057 . T A 14.91 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.191;DP=112;Dels=0.00;FS=2.087;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=35.38;MQ0=0;MQRankSum=-2.924;QD=0.13;ReadPosRankSum=3.002;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:4,108:112:6:46,6,0 chrVII 321069 . G T 1051 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=37.20;MQ0=0;QD=10.11;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1084,120,0 chrVII 321072 . G A 970 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=38.52;MQ0=0;QD=9.24;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1003,108,0 chrVII 321247 . C A 2598 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;QD=24.98;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2631,279,0 chrVII 321469 . C A 586 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=19.53;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:66:619,66,0 chrVII 321472 . C T 571 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;QD=21.15;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:66:604,66,0 chrVII 321718 . G C 1901 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1934,222,0 chrVII 323014 . A G 5610.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=23.2572;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.74;SB=-3.091e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5610,645,0 chrVII 323073 . T C 4224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=187;Dels=0.00;FS=3.504;HaplotypeScore=9.0032;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=1.620;QD=22.59;ReadPosRankSum=1.713;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4224,474,0 chrVII 323128 . T C 5101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=220;Dels=0.00;FS=3.814;HaplotypeScore=7.0570;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=1.495;QD=23.19;ReadPosRankSum=1.685;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:5101,579,0 chrVII 323170 . T C 5322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=245;Dels=0.00;FS=5.258;HaplotypeScore=10.2342;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.460;QD=21.72;ReadPosRankSum=1.718;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:5322,615,0 chrVII 323295 . A G 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;MQRankSum=-1.241;QD=21.72;ReadPosRankSum=1.706;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2943,330,0 chrVII 323303 . A G 2826 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=21.09;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2859,318,0 chrVII 323321 . A T 2256 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=18.96;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2289,258,0 chrVII 323433 . A T 972 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=0;QD=18.34;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1005,126,0 chrVII 323434 . G A 1010 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=0;QD=19.06;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1043,129,0 chrVII 323441 . C T 1093 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.42;MQ0=0;QD=20.24;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1126,135,0 chrVII 323456 . C T 1146 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.66;MQ0=0;QD=20.11;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1179,147,0 chrVII 323461 . G A 1306 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=0;QD=21.06;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1339,162,0 chrVII 323495 . C G 908 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;QD=18.16;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:941,108,0 chrVII 323500 . C T 969 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=19.00;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1002,111,0 chrVII 323540 . T C 794 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=18.47;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:96:827,96,0 chrVII 323582 . G A 37.97 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.05;FS=0.000;HaplotypeScore=18.3637;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=1.73;SB=-4.798e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:9:70,9,0 chrVII 323584 . G A 37.97 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=18.3637;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;QD=1.81;SB=-8.598e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:9:70,9,0 chrVII 323594 . G A 481 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.67;MQ0=0;QD=17.81;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:63:514,63,0 chrVII 323600 . T C 413 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.81;MQ0=0;QD=17.96;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:57:446,57,0 chrVII 323602 . A G 408 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.81;MQ0=0;QD=17.74;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:57:441,57,0 chrVII 323607 . T G 412 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.53;MQ0=0;QD=16.48;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:57:445,57,0 chrVII 323641 . A C 415 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.66;MQ0=0;QD=14.82;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:60:448,60,0 chrVII 323644 . A T 363 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.66;MQ0=0;QD=12.96;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:54:396,54,0 chrVII 323653 . T C 410 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.66;MQ0=0;QD=14.64;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:60:443,60,0 chrVII 323686 . C T 134.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=12.19;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:167,21,0 chrVII 323688 . C T 132.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=12.01;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:165,21,0 chrVII 323695 . C G 134.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=0;QD=14.90;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:21:167,21,0 chrVII 323703 . T C 156.03 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=4.9376;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=15.60;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:24:189,24,0 chrVII 323738 . T C 68.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=11.42;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:101,12,0 chrVII 323775 . A T 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=2.13;SB=-2.664e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:6:46,6,0 chrVII 323777 . A C 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=2.55;SB=-2.964e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:6:49,6,0 chrVII 323778 . A C 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=2.41;SB=-2.864e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:6:48,6,0 chrVII 323781 . A T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.92;MQ0=0;QD=2.23;SB=-2.964e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:6:49,6,0 chrVII 323937 . A T 264 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=8.9530;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=12.00;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:39:297,39,0 chrVII 323966 . A G 346 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=14.42;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:51:379,51,0 chrVII 323971 . A T 344 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=0;QD=14.96;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:51:377,51,0 chrVII 324002 . C G 326 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=18.11;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:48:359,48,0 chrVII 324005 . C G 324 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=18.00;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:48:357,48,0 chrVII 324023 . A T 75.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=12.54;SB=-4.276e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:108,15,0 chrVII 324062 . G A 238 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.49;MQ0=0;QD=13.22;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:30:271,30,0 chrVII 324082 . G A 436 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.20;MQ0=0;QD=16.77;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:48:469,48,0 chrVII 324119 . A G 923 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=16.48;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:956,108,0 chrVII 324177 . G A 699 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;QD=15.53;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:81:732,81,0 chrVII 324248 . T C 70.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=10.07;SB=-4.826e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:103,12,0 chrVII 324278 . A G 182.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=20.23;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:24:215,24,0 chrVII 324279 . T C 186.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=20.67;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:24:219,24,0 chrVII 324280 . T C 199.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.73;MQ0=0;QD=19.90;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:27:232,27,0 chrVII 324296 . A T 947 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.02;MQ0=0;QD=22.55;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:980,108,0 chrVII 324307 . G A 1100 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.65;MQ0=0;QD=24.44;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1133,123,0 chrVII 324328 . C G 1414 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=22.81;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1447,165,0 chrVII 324359 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.96;MQ0=0;QD=22.19;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1875,213,0 chrVII 324414 . T C 914 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.80;MQ0=0;QD=13.06;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:947,114,0 chrVII 324427 . G A 607 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;QD=10.47;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:78:640,78,0 chrVII 324430 . A G 598 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=8.953;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=0;MQRankSum=-1.669;QD=10.87;ReadPosRankSum=1.606;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:78:631,78,0 chrVII 324432 . A G 531 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.56;MQ0=0;QD=10.02;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:72:564,72,0 chrVII 324452 . T C 430 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.78;MQ0=0;QD=8.60;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:57:463,57,0 chrVII 324507 . C T 302 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=12.58;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:36:335,36,0 chrVII 324510 . C G 312 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=11.14;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:39:345,39,0 chrVII 324517 . G A 352 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=12.57;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:42:385,42,0 chrVII 324535 . C A 380 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=14.07;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:45:413,45,0 chrVII 324547 . G T 98.26 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=3.64;SB=-1.803e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:15:131,15,0 chrVII 324572 . C A 214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=45;Dels=0.00;FS=4.538;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=0;MQRankSum=-0.560;QD=4.76;ReadPosRankSum=-4.054;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:20,25:45:30:247,30,0 chrVII 324601 . G T 1399 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=13.99;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1432,165,0 chrVII 324620 . A G 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=118;Dels=0.00;FS=3.163;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.94;MQ0=0;MQRankSum=0.299;QD=14.14;ReadPosRankSum=1.702;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:1702,201,0 chrVII 324640 . A G 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=130;Dels=0.00;FS=6.620;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=39.26;MQ0=0;MQRankSum=1.662;QD=16.77;ReadPosRankSum=2.411;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:2,126:130:99:2213,261,0 chrVII 324676 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.76;MQ0=0;QD=18.48;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1992,222,0 chrVII 324723 . T C 660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;MQRankSum=-0.931;QD=10.00;ReadPosRankSum=2.374;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:2,63:66:81:693,81,0 chrVII 324740 . C T 563 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=9.88;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:66:596,66,0 chrVII 324741 . T A 512 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.81;MQ0=0;MQRankSum=0.896;QD=8.83;ReadPosRankSum=1.613;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,57:58:63:545,63,0 chrVII 324746 . C T 403 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.686;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;MQRankSum=1.405;QD=7.60;ReadPosRankSum=1.013;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,52:53:54:436,54,0 chrVII 324749 . T C 361 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.501;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.7277;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=0;MQRankSum=-1.133;QD=7.68;ReadPosRankSum=2.345;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:2,45:47:51:394,51,0 chrVII 324750 . T A 275 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.281;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.7277;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=0;MQRankSum=1.431;QD=5.85;ReadPosRankSum=1.657;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:1,46:47:39:308,39,0 chrVII 324754 . C T 412 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.9810;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;MQRankSum=-1.606;QD=7.49;ReadPosRankSum=1.669;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:57:445,57,0 chrVII 324799 . A C 1531 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.37;MQ0=0;QD=16.12;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1564,177,0 chrVII 324805 . G A 1683 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.66;MQ0=0;QD=16.18;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1716,189,0 chrVII 324837 . A C 2462 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;QD=17.97;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2495,285,0 chrVII 324884 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;QD=22.71;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3316,360,0 chrVII 324905 . T C 3144 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;QD=22.62;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3177,366,0 chrVII 324953 . G A 2693 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=34.53;MQ0=0;QD=24.48;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2726,291,0 chrVII 324957 . G A 2589 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=34.87;MQ0=0;QD=23.75;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2622,276,0 chrVII 325035 . G A 3046 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9067;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;QD=23.61;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3079,342,0 chrVII 325049 . C T 3175 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.91;MQ0=0;QD=25.00;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3208,351,0 chrVII 325050 . C T 3029 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.91;MQ0=0;QD=23.85;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3062,351,0 chrVII 325096 . T A 1972 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;QD=20.12;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2005,222,0 chrVII 325115 . A G 1508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=58.6909;MLEAC=2;MLEAF=1.00;MQ=38.33;MQ0=0;MQRankSum=-1.732;QD=17.33;ReadPosRankSum=1.692;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1541,174,0 chrVII 325136 . C T 1106 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=14.95;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1139,126,0 chrVII 325138 . G A 1107 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;QD=14.19;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1140,126,0 chrVII 325152 . A G 1411 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.66;MQ0=0;QD=15.68;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1444,162,0 chrVII 325191 . T C 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.52;MQ0=0;MQRankSum=-0.965;QD=14.73;ReadPosRankSum=1.704;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:1830,204,0 chrVII 325209 . A T 1796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=126;Dels=0.00;FS=3.044;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.33;MQ0=0;MQRankSum=-1.981;QD=14.25;ReadPosRankSum=2.411;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:1829,198,0 chrVII 325221 . A T 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=3.282;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=0;MQRankSum=1.601;QD=13.98;ReadPosRankSum=1.706;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:1879,201,0 chrVII 325246 . T C 1370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.16;MQ0=0;MQRankSum=0.910;QD=11.61;ReadPosRankSum=1.703;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1403,156,0 chrVII 325250 . G A 1175 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=10.13;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1208,135,0 chrVII 325257 . A T 1000 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=121.7800;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=9.26;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1033,117,0 chrVII 325283 . G A 671 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;QD=8.08;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:78:704,78,0 chrVII 325285 . A T 703 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;QD=8.47;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:81:736,81,0 chrVII 325306 . G A 722 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=12.8240;MLEAC=2;MLEAF=1.00;MQ=31.15;MQ0=0;QD=8.91;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:84:755,84,0 chrVII 325307 . T A 719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=12.6194;MLEAC=2;MLEAF=1.00;MQ=31.66;MQ0=0;MQRankSum=-1.518;QD=8.77;ReadPosRankSum=1.689;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:84:752,84,0 chrVII 325329 . A T 1000 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=35.55;MQ0=0;QD=10.64;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1033,117,0 chrVII 325363 . G A 2386 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=37.95;MQ0=0;QD=20.39;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2419,261,0 chrVII 325559 . A G 4723.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=10.6574;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=16.93;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,278:279:99:4723,528,0 chrVII 325744 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=18.68;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1938,210,0 chrVII 325752 . C T 1870 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=17.48;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1903,207,0 chrVII 325765 . G A 1942 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=16.18;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1975,213,0 chrVII 325784 . A G 1988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=129;Dels=0.00;FS=7.806;HaplotypeScore=7.9900;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;MQRankSum=0.436;QD=15.41;ReadPosRankSum=2.392;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:2,125:129:99:2021,219,0 chrVII 325875 . A G 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.0668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.423;QD=21.82;ReadPosRankSum=1.681;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3000,339,0 chrVII 326056 . C A 2124 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=22.84;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2157,228,0 chrVII 326290 . C T 418 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=14.41;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:51:451,51,0 chrVII 326437 . C A 1448 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=25.40;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1481,156,0 chrVII 326922 . A G 3337.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.0247;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.01;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3337,384,0 chrVII 326974 . G C 3643.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=15.3303;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.20;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3643,405,0 chrVII 327045 . A G 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=166;Dels=0.00;FS=2.937;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.916;QD=22.36;ReadPosRankSum=2.345;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3711,414,0 chrVII 327148 . C T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=22.56;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3317,354,0 chrVII 327158 . A G 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=3.424;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-1.711;QD=19.85;ReadPosRankSum=1.648;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3295,372,0 chrVII 327277 . T C 2598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.045;QD=20.95;ReadPosRankSum=1.703;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2631,300,0 chrVII 327346 . C G 3061 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.41;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3094,351,0 chrVII 327366 . T C 2849 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=20.06;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2882,327,0 chrVII 327549 . A T 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=3.310;HaplotypeScore=14.4343;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.716;QD=23.54;ReadPosRankSum=1.686;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3555,381,0 chrVII 327658 . C T 4722.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=24.85;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4722,507,0 chrVII 327680 . T G 4173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=186;Dels=0.00;FS=2.662;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=-1.268;QD=22.44;ReadPosRankSum=2.423;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4173,459,0 chrVII 327683 . G T 4022.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.51;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4022,438,0 chrVII 327858 . A G 5758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=244;Dels=0.00;FS=6.074;HaplotypeScore=15.8790;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.239;QD=23.60;ReadPosRankSum=2.971;SB=-2.950e+03 GT:AD:DP:GQ:PL 1/1:3,241:244:99:5758,639,0 chrVII 327931 . C A 4250.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.7219;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.37;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4250,465,0 chrVII 328027 . G A 3641.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=22.34;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3641,393,0 chrVII 328052 . A G 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-0.161;QD=21.00;ReadPosRankSum=2.382;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3078,351,0 chrVII 328069 . T A 3113 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=21.47;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3146,336,0 chrVII 328120 . A G 1917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.0879;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-0.892;QD=19.36;ReadPosRankSum=1.697;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1950,222,0 chrVII 328195 . C G 972 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=19.06;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,49:51:99:1005,111,0 chrVII 328214 . C T 611 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=0;QD=19.09;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,30:32:69:644,69,0 chrVII 328219 . C T 472 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=0;QD=15.73;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:57:505,57,0 chrVII 328223 . C T 437 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.03;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=32.86;MQ0=0;QD=14.57;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:54:470,54,0 chrVII 328226 . A T 422 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=32.53;MQ0=0;QD=12.79;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:51:455,51,0 chrVII 328270 . T G 372 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=4.301;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.79;MQ0=0;MQRankSum=1.337;QD=10.63;ReadPosRankSum=1.634;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:45:405,45,0 chrVII 328273 . T G 355 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=4.221;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.55;MQ0=0;MQRankSum=-0.421;QD=9.59;ReadPosRankSum=1.639;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:45:388,45,0 chrVII 328277 . G C 394 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.55;MQ0=0;QD=10.65;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:48:427,48,0 chrVII 328300 . G A 472 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.44;MQ0=0;QD=12.42;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:54:505,54,0 chrVII 328371 . T C 83.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;MQRankSum=-1.488;QD=5.95;ReadPosRankSum=1.488;SB=-1.002e+02 GT:AD:DP:GQ:PL 1/1:1,13:14:15:116,15,0 chrVII 328382 . C T 116.13 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.59;MQ0=0;QD=6.83;SB=-1.011e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:18:149,18,0 chrVII 328430 . T A 413 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.75;MQ0=0;QD=11.16;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:51:446,51,0 chrVII 328436 . A T 507 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.94;MQ0=0;QD=12.67;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:63:540,63,0 chrVII 328520 . C T 1051 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=0;QD=19.46;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1084,117,0 chrVII 328535 . T G 890 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;QD=16.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:54:99:923,108,0 chrVII 328549 . T C 636 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.585;QD=13.25;ReadPosRankSum=1.585;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,46:48:78:669,78,0 chrVII 328552 . C G 573 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.19;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:75:606,75,0 chrVII 328565 . T A 618 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=-1.161;QD=11.04;ReadPosRankSum=3.038;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:4,52:56:75:651,75,0 chrVII 328574 . C T 826 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.09;MQ0=0;QD=13.77;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:96:859,96,0 chrVII 328575 . A G 796 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;QD=13.05;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:96:829,96,0 chrVII 328715 . A G 1228 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=69.2349;MLEAC=2;MLEAF=1.00;MQ=35.99;MQ0=0;QD=15.54;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1261,141,0 chrVII 328743 . T C 1326 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.23;MQ0=0;QD=15.07;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1359,153,0 chrVII 328755 . G T 1518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=34.66;MQ0=0;MQRankSum=0.529;QD=15.98;ReadPosRankSum=0.018;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1551,177,0 chrVII 328810 . G A 2708 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.03;FS=0.000;HaplotypeScore=8.4203;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=22.57;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2741,294,0 chrVII 328846 . T C 2680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.2603;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=-0.215;QD=21.79;ReadPosRankSum=1.703;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2713,303,0 chrVII 328862 . G C 2455 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.3281;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=20.63;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2488,282,0 chrVII 329009 . G A 3697.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=25.32;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3697,396,0 chrVII 329109 . A G 3980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=1.358;QD=21.28;ReadPosRankSum=1.638;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:3980,444,0 chrVII 329301 . T C 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=3.808;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-1.125;QD=20.59;ReadPosRankSum=1.656;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2854,321,0 chrVII 329321 . C T 2599 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.15;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2632,282,0 chrVII 329347 . T C 2407 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.75;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2440,270,0 chrVII 330032 . T C 1998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=3.212;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.591;QD=22.70;ReadPosRankSum=1.653;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2031,228,0 chrVII 330257 . T C 2900 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.31;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2933,336,0 chrVII 330639 . A C 4707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=206;Dels=0.00;FS=3.386;HaplotypeScore=7.3614;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.664;QD=22.85;ReadPosRankSum=1.664;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4707,531,0 chrVII 330784 . A T 4587.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=16.0567;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.64;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4587,495,0 chrVII 330839 . G C 3508.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.93;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3508,408,0 chrVII 330881 . A G 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.7074;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.128;QD=20.08;ReadPosRankSum=1.662;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,148:152:99:3085,348,0 chrVII 330986 . T A 3153 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.7925;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.18;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3186,345,0 chrVII 332360 . G A 3832.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.22;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3832,423,0 chrVII 332537 . G A 3024 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.91;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3057,330,0 chrVII 332582 . C T 3585.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.28;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3585,378,0 chrVII 332606 . T C 3474.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.16;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3474,384,0 chrVII 332710 . C T 3277.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3277,348,0 chrVII 332753 . C T 2713 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.99;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2746,294,0 chrVII 333068 . T C 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.322;DP=191;Dels=0.00;FS=13.533;HaplotypeScore=13.5361;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.326;QD=21.77;ReadPosRankSum=3.359;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:4,186:191:99:4159,474,0 chrVII 333218 . G A 5558.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.15;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5558,583,0 chrVII 333509 . A G 5437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=227;Dels=0.00;FS=3.546;HaplotypeScore=12.5724;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.912;QD=23.95;ReadPosRankSum=1.701;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:1,223:227:99:5437,612,0 chrVII 334310 . G A 3440.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.09;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3440,381,0 chrVII 334340 . G A 3071 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.44;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3104,333,0 chrVII 334364 . C A 2919 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.95;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2952,324,0 chrVII 334584 . T C 2529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=112;Dels=0.00;FS=3.014;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=1.373;QD=22.58;ReadPosRankSum=2.340;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2562,291,0 chrVII 334633 . T C 3387.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=24.19;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3387,375,0 chrVII 334704 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=166;Dels=0.00;FS=2.565;HaplotypeScore=8.7001;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=0.194;QD=20.17;ReadPosRankSum=2.849;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3349,372,0 chrVII 334767 . T A 1460 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=11.87;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1493,159,0 chrVII 334768 . T G 1396 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;MQRankSum=-1.051;QD=11.44;ReadPosRankSum=1.704;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:1429,159,0 chrVII 334769 . T A 1481 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-1.164;QD=12.04;ReadPosRankSum=1.647;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:1514,159,0 chrVII 334770 . T A 1457 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=126;Dels=0.00;FS=2.990;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;MQRankSum=-1.617;QD=11.56;ReadPosRankSum=2.291;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:1490,159,0 chrVII 334808 . A G 2042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;MQRankSum=-0.272;QD=12.76;ReadPosRankSum=1.710;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2075,231,0 chrVII 334812 . G A 2159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.3094;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;MQRankSum=-0.871;QD=13.01;ReadPosRankSum=1.711;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:2192,240,0 chrVII 334832 . A G 2429 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=14.72;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:2462,276,0 chrVII 334871 . C A 2945 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=18.41;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2978,324,0 chrVII 334897 . T C 2662 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=18.23;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2695,315,0 chrVII 334918 . T G 2422 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=17.94;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2455,276,0 chrVII 334948 . C T 2128 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=16.76;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2161,246,0 chrVII 335095 . T C 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=170;Dels=0.00;FS=2.864;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-1.395;QD=22.96;ReadPosRankSum=2.392;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3904,444,0 chrVII 335140 . T C 3619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.496;QD=22.76;ReadPosRankSum=1.622;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3619,411,0 chrVII 335182 . A G 2845 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=18.84;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2878,324,0 chrVII 335193 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=14.18;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:2260,243,0 chrVII 335215 . T G 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=167;Dels=0.00;FS=2.923;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=0.508;QD=13.57;ReadPosRankSum=2.391;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:2300,264,0 chrVII 335348 . A G 4932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=220;Dels=0.00;FS=3.365;HaplotypeScore=12.9729;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.279;QD=22.42;ReadPosRankSum=1.684;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:1,217:220:99:4932,555,0 chrVII 335555 . A G 4654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-0.754;QD=22.06;ReadPosRankSum=1.715;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,208:211:99:4654,516,0 chrVII 335597 . G C 4546.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=20.57;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,215:221:99:4546,510,0 chrVII 335620 . C G 5490.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=9.0067;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.79;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5490,618,0 chrVII 335764 . C T 4980.01 SnpCluster AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;QD=20.84;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:4980,537,0 chrVII 335765 . C T 4987.01 SnpCluster AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;QD=20.78;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:4987,537,0 chrVII 335771 . A G 4495.01 SnpCluster AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=18.05;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:4495,507,0 chrVII 335798 . A G 4240.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=16.63;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,251:255:99:4240,483,0 chrVII 335821 . C T 4353.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=17.14;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:4353,486,0 chrVII 335873 . C T 6326.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=16.3840;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.20;SB=-3.344e+03 GT:AD:DP:GQ:PL 1/1:0,282:285:99:6326,673,0 chrVII 335970 . A G 6358.01 SnpCluster AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=6.4282;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=19.75;SB=-3.932e+03 GT:AD:DP:GQ:PL 1/1:0,322:322:99:6358,729,0 chrVII 335976 . C T 6203.01 SnpCluster AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=4.2770;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=19.69;SB=-4.037e+03 GT:AD:DP:GQ:PL 1/1:0,313:315:99:6203,672,0 chrVII 335980 . T C 5641.01 SnpCluster AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=5.3342;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=18.56;SB=-3.748e+03 GT:AD:DP:GQ:PL 1/1:0,304:304:99:5641,651,0 chrVII 336244 . C T 4292.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=23.20;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4292,462,0 chrVII 336541 . G A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3337,363,0 chrVII 336823 . T C 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=125;Dels=0.00;FS=6.561;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.226;QD=21.70;ReadPosRankSum=2.292;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2745,312,0 chrVII 336862 . A T 2959 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=24.25;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2992,321,0 chrVII 336889 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.60;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2745,303,0 chrVII 336959 . A C 2939 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.70;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2972,327,0 chrVII 337363 . T C 3340.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.86;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3340,366,0 chrVII 337507 . A T 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=137;Dels=0.00;FS=7.446;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.118;QD=22.82;ReadPosRankSum=2.359;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3159,342,0 chrVII 337618 . A G 2800 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.05;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2833,321,0 chrVII 337619 . A T 2930 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=22.03;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2963,318,0 chrVII 338293 . T C 742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=124;Dels=0.00;FS=6.096;HaplotypeScore=5.3967;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;MQRankSum=-1.708;QD=5.98;ReadPosRankSum=2.911;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:87:775,87,0 chrVII 338427 . A G 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=135;Dels=0.00;FS=8.008;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;MQRankSum=0.027;QD=18.19;ReadPosRankSum=2.322;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2489,291,0 chrVII 338437 . T C 2434 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;QD=17.26;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2467,279,0 chrVII 338449 . T C 2625 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=17.27;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2658,303,0 chrVII 338511 . A G 2713 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=20.10;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2746,315,0 chrVII 338625 . A G 5110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=228;Dels=0.00;FS=7.723;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.847;QD=22.41;ReadPosRankSum=2.363;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:2,226:228:99:5110,591,0 chrVII 338951 . T A 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=164;Dels=0.00;FS=3.583;HaplotypeScore=16.6810;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.155;QD=23.46;ReadPosRankSum=1.689;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3848,411,0 chrVII 339118 . G A 2705 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.17;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2738,285,0 chrVII 339606 . G T 2619 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.59;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2652,297,0 chrVII 339639 . G A 3178 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.02;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3211,336,0 chrVII 339750 . T C 2892 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2925,336,0 chrVII 339874 . A C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=14.3462;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.660;QD=21.87;ReadPosRankSum=1.708;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3248,363,0 chrVII 340038 . T C 2737 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.5796;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.38;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2770,321,0 chrVII 340068 . G A 2886 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.2243;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.46;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2919,309,0 chrVII 340131 . A T 2699 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.68;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2732,291,0 chrVII 340324 . G T 2962 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.3790;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=25.10;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2995,318,0 chrVII 340670 . G C 3494.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.8835;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.84;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3494,396,0 chrVII 340698 . G A 3635.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.4260;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.72;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3635,402,0 chrVII 340773 . C T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.11;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3665,396,0 chrVII 340935 . A G 4132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=179;Dels=0.00;FS=3.234;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=1.597;QD=23.08;ReadPosRankSum=1.616;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4132,459,0 chrVII 341429 . T G 3903.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.3839;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.65;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3903,435,0 chrVII 341493 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.12;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3329,372,0 chrVII 341659 . C A 3140 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.0510;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.09;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3173,351,0 chrVII 341785 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.11;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2968,312,0 chrVII 341829 . G A 2305 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1011;MLEAC=2;MLEAF=1.00;MQ=60.61;MQ0=0;QD=22.60;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2338,249,0 chrVII 341959 . T C 2212 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7204;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.31;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2245,252,0 chrVII 342012 . T C 1993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.565;QD=23.45;ReadPosRankSum=2.334;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:2026,225,0 chrVII 342055 . A C 2530 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.05;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2563,285,0 chrVII 342332 . A G 2779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=3.118;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.268;QD=22.59;ReadPosRankSum=1.676;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2812,321,0 chrVII 342398 . C T 2130 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.52;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2163,240,0 chrVII 342416 . G A 2468 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.09;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2501,273,0 chrVII 342704 . A G 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.278;DP=137;Dels=0.00;FS=16.680;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.397;QD=22.34;ReadPosRankSum=3.394;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:4,132:137:99:3093,363,0 chrVII 342962 . A G 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.395;DP=139;Dels=0.00;FS=5.276;HaplotypeScore=6.4654;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.619;QD=17.31;ReadPosRankSum=3.370;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:4,135:139:99:2439,270,0 chrVII 343639 . C T 3583.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.21;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3583,387,0 chrVII 343914 . A G 3159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;DP=145;Dels=0.00;FS=5.468;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.799;QD=21.79;ReadPosRankSum=2.910;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3192,363,0 chrVII 344216 . A C 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.585;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.616;QD=22.40;ReadPosRankSum=1.675;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2743,303,0 chrVII 344309 . T G 3820.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.8688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3820,423,0 chrVII 344394 . T C 4188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.2313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.232;QD=23.14;ReadPosRankSum=1.713;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4188,477,0 chrVII 344550 . T C 4019.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4019,471,0 chrVII 344608 . T C 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=161;Dels=0.00;FS=9.015;HaplotypeScore=12.1795;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.453;QD=23.45;ReadPosRankSum=2.419;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3775,426,0 chrVII 344881 . A G 3927.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.2074;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.58;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3927,441,0 chrVII 344989 . G A 3820.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.46;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3820,417,0 chrVII 344998 . G A 3926.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=22.56;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3926,423,0 chrVII 345064 . G A 3042 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.2869;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.27;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3075,333,0 chrVII 345331 . C T 3090 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=24.72;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3123,339,0 chrVII 345471 . T C 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.8161;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.463;QD=22.03;ReadPosRankSum=1.692;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3790,432,0 chrVII 345912 . T C 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=149;Dels=0.00;FS=6.231;HaplotypeScore=7.2560;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=-1.379;QD=19.57;ReadPosRankSum=2.399;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:2,145:149:99:2949,330,0 chrVII 345925 . T C 2579 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=18.42;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2612,303,0 chrVII 345936 . T C 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=144;Dels=0.01;FS=6.237;HaplotypeScore=6.5486;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-0.954;QD=17.49;ReadPosRankSum=2.415;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2552,288,0 chrVII 346166 . G A 3898.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.9682;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.20;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3898,414,0 chrVII 346250 . T C 3474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=2.978;HaplotypeScore=7.6251;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.105;QD=22.71;ReadPosRankSum=2.385;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3474,396,0 chrVII 346294 . A G 3681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.113;QD=21.78;ReadPosRankSum=1.712;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3681,417,0 chrVII 346793 . C T 2965 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2045;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.29;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2998,321,0 chrVII 346985 . G A 3902.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3902,417,0 chrVII 347036 . G A 3118 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.10;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3151,339,0 chrVII 347134 . G A 4146.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.4613;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:4146,436,0 chrVII 347168 . G A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.9341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3788,405,0 chrVII 347223 . C T 3428.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.31;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3428,375,0 chrVII 347274 . C T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.2681;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=24.13;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3402,363,0 chrVII 347523 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.91;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3575,399,0 chrVII 347526 . T C 3434.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=20.44;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3434,393,0 chrVII 347562 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=19.29;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2830,306,0 chrVII 347577 . T C 2878 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.45;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2911,324,0 chrVII 347679 . A T 4796.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.6875;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.10;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4796,511,0 chrVII 348496 . C T 3719.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.5883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3719,399,0 chrVII 348923 . T G 2998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=136;Dels=0.00;FS=3.932;HaplotypeScore=10.6481;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.477;QD=22.04;ReadPosRankSum=1.707;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3031,351,0 chrVII 349044 . G A 2310 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2343,255,0 chrVII 349165 . A G 3094 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.09;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3127,351,0 chrVII 349285 . C T 3091 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=25.97;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3124,333,0 chrVII 349962 . C T 3495.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3495,381,0 chrVII 350485 . T C 911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.030;DP=122;Dels=0.00;FS=2.466;HaplotypeScore=94.6838;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;MQRankSum=2.720;QD=7.47;ReadPosRankSum=-8.091;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:47,75:122:99:944,108,0 chrVII 350521 . T A 1469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;MQRankSum=-0.966;QD=14.12;ReadPosRankSum=1.699;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1502,162,0 chrVII 350557 . T C 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.119;QD=20.14;ReadPosRankSum=1.702;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2369,270,0 chrVII 350610 . T A 2579 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.23;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2612,288,0 chrVII 350868 . A G 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=126;Dels=0.00;FS=2.965;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.856;QD=19.92;ReadPosRankSum=2.410;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2543,288,0 chrVII 351015 . A G 3678.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3678,408,0 chrVII 351063 . T C 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.389;QD=23.49;ReadPosRankSum=1.652;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3087,345,0 chrVII 351287 . G A 3541.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.6465;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.46;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3541,402,0 chrVII 352151 . G A 4543.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4543,486,0 chrVII 352206 . G A 4051.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4051,447,0 chrVII 352268 . T C 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=3.747;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.671;QD=23.69;ReadPosRankSum=1.712;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4099,456,0 chrVII 352556 . G A 3518.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=21.58;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3518,384,0 chrVII 352563 . A G 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=3.522;HaplotypeScore=4.0766;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=-1.687;QD=22.10;ReadPosRankSum=1.551;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3403,387,0 chrVII 352723 . T C 2174 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=17.39;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2207,249,0 chrVII 352724 . G A 2228 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=18.26;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2261,246,0 chrVII 352729 . T C 2123 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=133;Dels=0.00;FS=3.835;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;MQRankSum=0.013;QD=15.96;ReadPosRankSum=1.680;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2156,249,0 chrVII 352734 . C T 2360 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=16.50;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2393,267,0 chrVII 352838 . T C 2254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=121;Dels=0.00;FS=3.027;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-1.425;QD=18.63;ReadPosRankSum=2.409;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2287,258,0 chrVII 352844 . G A 2602 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.33;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2635,285,0 chrVII 353297 . G C 3547.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3547,399,0 chrVII 353381 . A G 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.347;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.6531;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.192;QD=23.67;ReadPosRankSum=1.660;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3409,362,0 chrVII 353777 . G A 2243 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.57;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2276,246,0 chrVII 353852 . G T 2540 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2573,282,0 chrVII 354217 . G A 2838 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.05;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2871,306,0 chrVII 354432 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=15.3391;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.20;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2817,300,0 chrVII 354473 . C A 3058 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.49;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3091,330,0 chrVII 354732 . T C 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-0.766;QD=20.35;ReadPosRankSum=1.711;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3358,372,0 chrVII 354740 . G A 3570.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.4100;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.83;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3570,381,0 chrVII 354898 . A G 3817.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=24.47;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3817,423,0 chrVII 355076 . A C 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=0.000;QD=22.17;ReadPosRankSum=1.676;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2782,309,0 chrVII 355078 . T C 2657 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=21.26;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2690,309,0 chrVII 355098 . T C 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=4.091;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=0.176;QD=21.37;ReadPosRankSum=1.703;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2555,282,0 chrVII 355179 . A G 3055 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=18.29;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3088,348,0 chrVII 355188 . A G 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=176;Dels=0.00;FS=7.510;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=0.035;QD=17.12;ReadPosRankSum=2.422;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3046,342,0 chrVII 355193 . A G 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=178;Dels=0.00;FS=3.763;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=-0.157;QD=16.71;ReadPosRankSum=1.693;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:3007,336,0 chrVII 355225 . C T 2639 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=17.14;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2672,282,0 chrVII 355292 . G A 3412.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.37;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3412,357,0 chrVII 355706 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.12;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3085,342,0 chrVII 355865 . T C 4262.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.79;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4262,492,0 chrVII 356296 . C T 3367.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.55;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3367,366,0 chrVII 356351 . T C 2653 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.41;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2686,309,0 chrVII 356393 . A T 2424 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=22.24;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2457,261,0 chrVII 356416 . C A 2383 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.47;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2416,261,0 chrVII 356669 . C T 3652.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.26;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3652,402,0 chrVII 356738 . C T 4096.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.09;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4096,441,0 chrVII 356929 . A C 2593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.064;QD=23.79;ReadPosRankSum=1.668;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2626,297,0 chrVII 357041 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.22;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:2000,216,0 chrVII 357061 . T C 2009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=3.496;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.102;QD=23.64;ReadPosRankSum=1.691;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2042,231,0 chrVII 357149 . G A 2015 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=12.6132;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.56;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2048,228,0 chrVII 357208 . A G 2463 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.91;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2496,279,0 chrVII 357269 . A G 2095 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.81;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2128,237,0 chrVII 357451 . C G 3981.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.0527;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.28;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3981,438,0 chrVII 357508 . T C 2881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=142;Dels=0.00;FS=2.717;HaplotypeScore=3.3644;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-1.787;QD=20.29;ReadPosRankSum=2.415;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:2914,333,0 chrVII 357517 . A G 3060 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1530;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.26;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3093,342,0 chrVII 357539 . C T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.34;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3606,384,0 chrVII 357689 . G A 3878.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.79;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3878,429,0 chrVII 357730 . C T 4508.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.0093;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.00;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4508,495,0 chrVII 357863 . C T 4971.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.9747;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=23.23;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4971,540,0 chrVII 358102 . T C 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=4.563;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;MQRankSum=0.161;QD=17.11;ReadPosRankSum=1.713;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3181,372,0 chrVII 358168 . A T 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=140;Dels=0.00;FS=2.811;HaplotypeScore=7.4739;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;MQRankSum=0.971;QD=16.01;ReadPosRankSum=2.414;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:2275,246,0 chrVII 358237 . T C 2365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=3.322;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-1.492;QD=23.42;ReadPosRankSum=1.698;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2398,267,0 chrVII 358264 . T C 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=109;Dels=0.00;FS=3.351;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-0.621;QD=20.80;ReadPosRankSum=1.634;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,105:109:99:2300,264,0 chrVII 358522 . G A 2368 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.8216;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.79;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,122:126:99:2401,270,0 chrVII 358537 . C T 2302 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=19.34;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2335,252,0 chrVII 358656 . C T 3296.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3296,354,0 chrVII 358777 . C T 4140.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.79;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4140,444,0 chrVII 358861 . T G 3675.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3675,417,0 chrVII 359227 . A G 2530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8198;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.532;QD=21.44;ReadPosRankSum=2.345;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2563,291,0 chrVII 359313 . T G 2159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.108;QD=22.49;ReadPosRankSum=1.660;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2192,255,0 chrVII 359392 . G A 2629 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.34;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2662,285,0 chrVII 360004 . T C 2032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=90;Dels=0.00;FS=10.100;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.382;QD=22.58;ReadPosRankSum=2.922;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:3,87:90:99:2065,231,0 chrVII 360075 . G A 2304 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2337,246,0 chrVII 360139 . C T 2010 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.0879;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.33;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2043,222,0 chrVII 360236 . A C 2248 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=22.26;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2281,255,0 chrVII 360441 . T C 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.720;QD=21.48;ReadPosRankSum=1.687;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3330,378,0 chrVII 360498 . A G 4006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=185;Dels=0.00;FS=6.141;HaplotypeScore=6.6876;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.559;QD=21.65;ReadPosRankSum=2.409;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:4006,444,0 chrVII 360816 . C T 4526.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.1402;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.57;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4526,492,0 chrVII 360861 . A G 3737.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.2725;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.48;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3737,432,0 chrVII 360930 . G A 2595 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.37;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2628,291,0 chrVII 360942 . G A 3056 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.84;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3089,348,0 chrVII 361541 . C T 3351.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.1148;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.83;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3351,357,0 chrVII 361547 . A G 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=169;Dels=0.00;FS=3.088;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=0.666;QD=18.57;ReadPosRankSum=1.691;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3171,348,0 chrVII 361704 . C G 3650.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.7485;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.47;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,166:170:99:3650,414,0 chrVII 361841 . C T 1892 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.13;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1925,207,0 chrVII 361880 . A G 2748 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2781,309,0 chrVII 362066 . G A 2030 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.17;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2063,222,0 chrVII 362116 . C T 2399 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.0380;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.99;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2432,261,0 chrVII 362846 . A G 5312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=244;Dels=0.00;FS=5.535;HaplotypeScore=16.7652;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-2.611;QD=21.77;ReadPosRankSum=2.946;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:3,237:244:99:5312,603,0 chrVII 362890 . A T 5480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=235;Dels=0.00;FS=2.877;HaplotypeScore=22.9870;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.075;QD=23.32;ReadPosRankSum=2.355;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:2,233:235:99:5480,589,0 chrVII 363152 . G A 5343.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=13.6902;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.13;SB=-2.986e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5343,582,0 chrVII 363278 . A G 7153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=309;Dels=0.00;FS=6.035;HaplotypeScore=18.2310;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.132;QD=23.15;ReadPosRankSum=2.401;SB=-3.694e+03 GT:AD:DP:GQ:PL 1/1:2,304:309:99:7153,798,0 chrVII 363325 . A G 6087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.026;DP=270;Dels=0.00;FS=3.276;HaplotypeScore=15.2676;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.437;QD=22.54;ReadPosRankSum=1.706;SB=-2.953e+03 GT:AD:DP:GQ:PL 1/1:1,269:270:99:6087,662,0 chrVII 363362 . T C 6515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=277;Dels=0.00;FS=5.788;HaplotypeScore=23.1928;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.344;QD=23.52;ReadPosRankSum=2.931;SB=-2.938e+03 GT:AD:DP:GQ:PL 1/1:3,274:277:99:6515,735,0 chrVII 363731 . T C 3470.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.10;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3470,402,0 chrVII 363816 . A T 2720 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.43;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2753,294,0 chrVII 363924 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.98;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:2830,312,0 chrVII 363931 . C T 2807 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.8350;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=20.79;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2840,306,0 chrVII 364007 . C T 2168 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=2.7499;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=18.22;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2201,237,0 chrVII 364010 . T C 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.9612;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-1.175;QD=18.72;ReadPosRankSum=1.083;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2130,243,0 chrVII 364128 . C T 1470 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=16.15;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1503,165,0 chrVII 364587 . A G 3528.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=225;Dels=0.00;FS=2.685;HaplotypeScore=11.6057;MLEAC=2;MLEAF=1.00;MQ=26.74;MQ0=23;MQRankSum=-0.675;QD=15.68;ReadPosRankSum=2.364;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:9,216:225:99:3528,399,0 chrVII 364650 . C G 1197 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=17;QD=15.35;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,74:78:99:1230,141,0 chrVII 364893 . T C 1711 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=36.18;MQ0=26;QD=16.61;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:8,95:103:99:1744,195,0 chrVII 364950 . C T 3670.01 filter AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=11;QD=20.97;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3670,393,0 chrVII 365020 . G A 2113 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=15.20;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2146,231,0 chrVII 365023 . G A 1904 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=14.32;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1937,219,0 chrVII 365049 . A G 1271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=6.651;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.86;MQ0=0;MQRankSum=-1.326;QD=11.45;ReadPosRankSum=1.670;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1304,147,0 chrVII 365054 . T C 1300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;MQRankSum=-1.523;QD=11.21;ReadPosRankSum=1.643;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1333,153,0 chrVII 365076 . G A 1307 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;QD=11.67;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1340,144,0 chrVII 365097 . C T 1507 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.61;MQ0=0;QD=12.25;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1540,168,0 chrVII 365109 . T C 1773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;MQRankSum=-0.192;QD=13.13;ReadPosRankSum=1.706;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:1806,204,0 chrVII 365268 . A G 3154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=-0.639;QD=21.03;ReadPosRankSum=1.709;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3187,360,0 chrVII 365290 . C T 3094 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=21.64;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3127,336,0 chrVII 365333 . G C 3581.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=21.57;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3581,399,0 chrVII 365412 . G A 2632 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.89;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2665,294,0 chrVII 365699 . T C 925 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=15.16;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:958,111,0 chrVII 365727 . A G 635 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=9.92;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:75:668,75,0 chrVII 365766 . C T 1275 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=16.35;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1308,138,0 chrVII 365991 . G A 2849 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=23.16;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2882,315,0 chrVII 366038 . A T 3183 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.08;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3216,360,0 chrVII 366072 . G A 2910 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.72;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2943,321,0 chrVII 366157 . G C 2286 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=19.88;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2319,255,0 chrVII 366165 . C G 2130 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=18.36;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2163,246,0 chrVII 366216 . G A 1211 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.02;FS=0.000;HaplotypeScore=72.4881;MLEAC=2;MLEAF=1.00;MQ=42.61;MQ0=0;QD=13.46;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1244,141,0 chrVII 366235 . G A 2016 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=18.16;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2049,222,0 chrVII 366277 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=21.11;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2756,300,0 chrVII 366314 . T C 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=17.0312;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.538;QD=22.54;ReadPosRankSum=1.677;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2895,327,0 chrVII 366607 . T G 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=146;Dels=0.00;FS=5.533;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.933;QD=19.83;ReadPosRankSum=1.684;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,142:146:99:2928,333,0 chrVII 366614 . T C 2676 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.12;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2709,318,0 chrVII 366666 . C T 2008 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=19.88;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2041,225,0 chrVII 366762 . A G 1824 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=20.04;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1857,210,0 chrVII 367179 . T G 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=162;Dels=0.00;FS=3.092;HaplotypeScore=13.5663;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.570;QD=18.60;ReadPosRankSum=1.668;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3046,342,0 chrVII 367480 . A G 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=175;Dels=0.00;FS=2.787;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.572;QD=19.95;ReadPosRankSum=2.407;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:3492,387,0 chrVII 367737 . T C 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=4.195;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=0.569;QD=20.37;ReadPosRankSum=1.629;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2783,306,0 chrVII 367741 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.88;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2831,306,0 chrVII 367828 . G A 2903 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2936,312,0 chrVII 368439 . T C 4978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=229;Dels=0.00;FS=3.903;HaplotypeScore=9.6923;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.828;QD=21.74;ReadPosRankSum=1.717;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:1,225:229:99:4978,573,0 chrVII 368488 . T C 4974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=236;Dels=0.00;FS=8.043;HaplotypeScore=24.8083;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.404;QD=21.08;ReadPosRankSum=2.418;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:2,232:235:99:4974,576,0 chrVII 368573 . T C 3657.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.54;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,173:178:99:3657,399,0 chrVII 368966 . T C 3519.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.34;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3519,390,0 chrVII 369010 . T A 4112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=199;Dels=0.00;FS=10.649;HaplotypeScore=15.0954;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.183;QD=20.66;ReadPosRankSum=2.914;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:4112,447,0 chrVII 369119 . T A 4779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=224;Dels=0.00;FS=2.918;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=0.685;QD=21.33;ReadPosRankSum=2.307;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:4779,513,0 chrVII 369125 . A G 4557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=223;Dels=0.00;FS=7.753;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=1.351;QD=20.44;ReadPosRankSum=2.416;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:2,217:223:99:4557,513,0 chrVII 369167 . G A 4124.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.2727;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=20.93;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4124,444,0 chrVII 369451 . T C 3759.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.0582;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.35;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3759,432,0 chrVII 369535 . C T 3397.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=17.0227;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.95;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3397,375,0 chrVII 369600 . A G 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=3.328;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.325;QD=23.74;ReadPosRankSum=1.712;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4035,444,0 chrVII 369666 . G T 3352.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.12;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3352,360,0 chrVII 369700 . T C 2439 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.01;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2472,276,0 chrVII 369724 . A G 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=128;Dels=0.00;FS=3.045;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-2.238;QD=22.38;ReadPosRankSum=2.354;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2898,327,0 chrVII 369796 . G A 4068.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.65;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4068,453,0 chrVII 369862 . A G 2737 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=21.90;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2770,309,0 chrVII 369881 . C A 2619 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.47;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2652,282,0 chrVII 369971 . T C 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=163;Dels=0.00;FS=2.951;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.038;QD=23.56;ReadPosRankSum=2.389;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3841,429,0 chrVII 370030 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=0.232;QD=20.08;ReadPosRankSum=-0.528;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,163:167:99:3353,378,0 chrVII 370045 . C T 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.563;DP=165;Dels=0.00;FS=3.926;HaplotypeScore=5.8957;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.181;QD=19.17;ReadPosRankSum=-0.308;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3196,333,0 chrVII 370075 . T C 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=2.785;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=0.342;QD=19.01;ReadPosRankSum=2.406;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3246,369,0 chrVII 370150 . C T 4454.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.82;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4454,475,0 chrVII 370360 . A G 4824.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-2.795e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4824,540,0 chrVII 370489 . A C 3999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.9687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.635;QD=22.59;ReadPosRankSum=1.481;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3999,439,0 chrVII 370641 . G T 4187.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.66;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4187,453,0 chrVII 370822 . G A 5208.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5208,556,0 chrVII 370870 . T G 5741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.076;QD=23.63;ReadPosRankSum=2.429;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:2,240:243:99:5741,651,0 chrVII 371244 . C T 3988.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.8262;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=19.94;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:3988,432,0 chrVII 371263 . G A 3413.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=19.17;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3413,363,0 chrVII 371265 . A G 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=182;Dels=0.00;FS=3.032;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=-0.430;QD=17.49;ReadPosRankSum=2.409;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:3216,363,0 chrVII 371335 . G A 4396.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.8844;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.43;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4396,474,0 chrVII 371489 . T G 4567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=195;Dels=0.00;FS=3.561;HaplotypeScore=17.5679;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=-0.494;QD=23.42;ReadPosRankSum=1.714;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4567,507,0 chrVII 371877 . A G 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.425;QD=21.86;ReadPosRankSum=1.644;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3454,390,0 chrVII 371937 . A G 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=132;Dels=0.00;FS=2.833;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.535;QD=22.15;ReadPosRankSum=2.412;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2957,333,0 chrVII 372033 . G C 5703.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.3175;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5703,639,0 chrVII 372223 . T G 5351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.346;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=9.4794;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.917;QD=20.98;ReadPosRankSum=1.352;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:5351,597,0 chrVII 372293 . G A 6004.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,282:282:99:6004,651,0 chrVII 372417 . G A 4718.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.23;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4718,502,0 chrVII 372605 . A T 4554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=198;Dels=0.00;FS=5.576;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-1.675;QD=23.00;ReadPosRankSum=2.965;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:4554,501,0 chrVII 372717 . G A 4675.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.26;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4675,493,0 chrVII 372926 . A C 5016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=221;Dels=0.00;FS=8.252;HaplotypeScore=16.6580;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.925;QD=22.70;ReadPosRankSum=2.405;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:2,217:221:99:5016,558,0 chrVII 373258 . A G 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=155;Dels=0.00;FS=2.959;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.515;QD=22.68;ReadPosRankSum=2.402;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3516,390,0 chrVII 373531 . A G 3635.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.01;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3635,408,0 chrVII 373580 . T C 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.124;QD=23.67;ReadPosRankSum=1.626;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3134,354,0 chrVII 373624 . C T 3407.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.18;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3407,360,0 chrVII 373646 . C T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.99;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3431,381,0 chrVII 373713 . T C 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=150;Dels=0.01;FS=6.471;HaplotypeScore=10.6209;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.470;QD=21.11;ReadPosRankSum=2.384;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3200,363,0 chrVII 373766 . C T 3388.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.5105;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=19.93;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3388,366,0 chrVII 373781 . A G 3442.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.9399;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.34;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3442,393,0 chrVII 373940 . C G 3615.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=19.33;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3615,399,0 chrVII 373957 . A T 3370.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=17.28;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3370,366,0 chrVII 373958 . C T 3375.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=17.40;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3375,360,0 chrVII 374092 . A G 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.165;DP=180;Dels=0.00;FS=2.395;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.408;QD=20.66;ReadPosRankSum=3.322;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:4,174:180:99:3718,414,0 chrVII 374354 . A G 3163 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.52;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3196,360,0 chrVII 374582 . T C 4169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=183;Dels=0.00;FS=2.992;HaplotypeScore=13.5978;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.547;QD=22.78;ReadPosRankSum=2.382;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:4169,465,0 chrVII 374962 . C G 2392 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.02;FS=0.000;HaplotypeScore=20.2042;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.26;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2425,273,0 chrVII 374973 . G A 2788 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=22.8754;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.10;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2821,312,0 chrVII 375001 . G A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.9268;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.18;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3682,408,0 chrVII 375036 . G A 4064.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.77;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4064,429,0 chrVII 375227 . A T 4290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.1853;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.097;QD=22.34;ReadPosRankSum=1.696;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4290,468,0 chrVII 375494 . G T 4836.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.9357;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.36;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4836,531,0 chrVII 376112 . T A 3493.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=17.5248;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.09;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3493,375,0 chrVII 376235 . C T 3492.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.0764;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.59;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3492,369,0 chrVII 376314 . G A 3847.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.90;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3847,417,0 chrVII 376364 . A G 4028.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.98;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4028,447,0 chrVII 376705 . G A 3064 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3097,333,0 chrVII 376883 . A T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.99;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3269,357,0 chrVII 377024 . C T 3303.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.94;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3303,360,0 chrVII 377048 . C T 2831 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=20.22;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2864,306,0 chrVII 377049 . C T 2960 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=20.99;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2993,318,0 chrVII 377156 . T C 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=3.300;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.062;QD=20.15;ReadPosRankSum=1.704;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2552,291,0 chrVII 377277 . A G 3379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=3.297;HaplotypeScore=5.4586;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=1.167;QD=23.96;ReadPosRankSum=1.708;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3379,381,0 chrVII 377581 . G A 3979.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=15.0356;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.56;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3979,423,0 chrVII 377833 . T C 4856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=215;Dels=0.00;FS=5.918;HaplotypeScore=18.3262;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.512;QD=22.59;ReadPosRankSum=2.967;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:3,211:215:99:4856,552,0 chrVII 378078 . C A 4616.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.16;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4616,492,0 chrVII 378112 . T C 3714.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.14;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3714,414,0 chrVII 378347 . C T 3694.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.09;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3694,396,0 chrVII 378538 . T A 6135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=241;Dels=0.00;FS=5.945;HaplotypeScore=18.1284;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.749;QD=25.46;ReadPosRankSum=2.912;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:3,238:241:99:6135,661,0 chrVII 378844 . C A 5141.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.2850;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.05;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:5141,570,0 chrVII 378973 . A G 4714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=214;Dels=0.00;FS=8.242;HaplotypeScore=23.6492;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=-0.657;QD=22.03;ReadPosRankSum=2.391;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:2,209:214:99:4714,528,0 chrVII 379046 . C T 5816.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=17.9558;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.54;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,256:258:99:5816,628,0 chrVII 379420 . T C 4105.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=22.19;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4105,456,0 chrVII 379480 . C G 3525.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.3044;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.38;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3525,402,0 chrVII 379579 . T C 3082 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.70;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3115,345,0 chrVII 379601 . C T 3276.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.91;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3276,342,0 chrVII 379677 . T C 3018 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.39;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3051,345,0 chrVII 379743 . A G 2270 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.83;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2303,261,0 chrVII 379781 . G C 2225 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.67;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2258,264,0 chrVII 380141 . C T 2871 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.97;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2904,309,0 chrVII 380177 . A T 2866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.953;QD=23.88;ReadPosRankSum=1.703;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2899,312,0 chrVII 380323 . G A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=24.35;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3944,420,0 chrVII 380359 . T C 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.624;DP=152;Dels=0.00;FS=8.028;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=0.775;QD=18.86;ReadPosRankSum=3.749;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:5,146:152:99:2900,327,0 chrVII 380368 . T C 2948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-1.136;QD=18.78;ReadPosRankSum=1.710;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2981,336,0 chrVII 380930 . A G 2948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=129;Dels=0.00;FS=2.594;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.677;QD=22.85;ReadPosRankSum=2.882;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2981,333,0 chrVII 381313 . C T 3783.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.4665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3783,402,0 chrVII 381438 . A G 2433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-1.530;QD=19.94;ReadPosRankSum=1.703;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2466,276,0 chrVII 381441 . C T 2378 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.49;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2411,267,0 chrVII 381517 . C G 3458.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.36;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3458,378,0 chrVII 381897 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.20;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3596,390,0 chrVII 382144 . A C 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.415;QD=24.06;ReadPosRankSum=1.683;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3416,387,0 chrVII 382210 . A G 4054.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.15;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4054,453,0 chrVII 382476 . A G 3934.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.28;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3934,438,0 chrVII 382993 . G A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.63;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3721,396,0 chrVII 383010 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.68;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3391,354,0 chrVII 383116 . T C 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.1336;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.133;QD=22.65;ReadPosRankSum=1.705;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,129:133:99:3045,336,0 chrVII 383348 . T C 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=16.2749;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=1.187;QD=22.41;ReadPosRankSum=1.667;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3585,408,0 chrVII 383402 . A C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=151;Dels=0.00;FS=4.438;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=1.791;QD=21.41;ReadPosRankSum=3.083;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:4,145:151:99:3269,375,0 chrVII 383465 . C T 3817.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=23.56;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3817,403,0 chrVII 383509 . A T 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.412;DP=185;Dels=0.00;FS=14.880;HaplotypeScore=143.3962;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;MQRankSum=-1.087;QD=19.54;ReadPosRankSum=3.412;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:4,181:185:99:3615,384,0 chrVII 383573 . G T 3079 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=14.46;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:3112,333,0 chrVII 383584 . T C 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=200;Dels=0.00;FS=2.605;HaplotypeScore=5.0147;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;MQRankSum=-1.418;QD=14.04;ReadPosRankSum=2.425;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:2841,324,0 chrVII 383893 . A G 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=180;Dels=0.00;FS=5.947;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.309;QD=20.57;ReadPosRankSum=2.961;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:3703,429,0 chrVII 383977 . T C 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.249;DP=174;Dels=0.00;FS=5.258;HaplotypeScore=15.7914;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.467;QD=21.90;ReadPosRankSum=3.379;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:4,170:174:99:3811,426,0 chrVII 384196 . C A 5419.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=32.1519;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.94;SB=-2.988e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5419,588,0 chrVII 384239 . T C 5623.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.88;SB=-3.160e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:5623,630,0 chrVII 384425 . T C 5064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=234;Dels=0.00;FS=3.761;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.048;QD=21.64;ReadPosRankSum=1.702;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:1,232:234:99:5064,567,0 chrVII 384641 . C A 2680 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2713,294,0 chrVII 384678 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.42;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2974,327,0 chrVII 385178 . T A 3526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.6708;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.102;QD=20.74;ReadPosRankSum=-0.143;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3526,393,0 chrVII 385194 . C T 3136 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.0386;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.36;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3169,357,0 chrVII 385495 . A C 2240 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=40.44;MQ0=0;QD=15.45;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2273,264,0 chrVII 385519 . T C 2058 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.20;MQ0=0;MQRankSum=1.556;QD=14.81;ReadPosRankSum=1.682;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2091,234,0 chrVII 385522 . G T 2015 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.57;MQ0=0;QD=14.82;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2048,219,0 chrVII 385525 . A G 1832 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=0;QD=13.98;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1865,207,0 chrVII 385531 . C T 1643 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=13.47;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1676,183,0 chrVII 385534 . C T 1571 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.66;MQ0=0;QD=13.90;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1604,180,0 chrVII 385540 . A G 1231 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;MQRankSum=-1.232;QD=12.69;ReadPosRankSum=1.661;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1264,144,0 chrVII 385542 . T C 1221 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=99;Dels=0.00;FS=6.154;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;MQRankSum=-2.950;QD=12.33;ReadPosRankSum=2.929;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:3,96:99:99:1254,147,0 chrVII 385555 . C A 1301 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.23;MQ0=0;QD=13.41;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,94:97:99:1334,147,0 chrVII 385570 . T C 1611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.065;DP=115;Dels=0.00;FS=6.448;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=37.86;MQ0=0;MQRankSum=-1.273;QD=14.01;ReadPosRankSum=2.407;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:2,113:115:99:1644,183,0 chrVII 385619 . C T 4708.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=23.42;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4708,510,0 chrVII 385714 . C T 5704.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=3;QD=23.09;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5704,610,0 chrVII 386494 . G A 4605.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=21.03;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4605,495,0 chrVII 386539 . T C 3230.05 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=220;Dels=0.00;FS=7.869;HaplotypeScore=12.3309;MLEAC=2;MLEAF=1.00;MQ=34.59;MQ0=2;MQRankSum=-0.424;QD=14.68;ReadPosRankSum=2.416;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:4,215:220:99:3264,363,0 chrVII 386548 . C A 2919 SnpCluster AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.3549;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=2;QD=13.97;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:2952,318,0 chrVII 386549 . A C 2782 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=208;Dels=0.00;FS=5.892;HaplotypeScore=4.3549;MLEAC=2;MLEAF=1.00;MQ=30.70;MQ0=2;MQRankSum=-2.750;QD=13.37;ReadPosRankSum=2.966;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:5,202:208:99:2815,318,0 chrVII 386557 . A C 2650 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=2;MQRankSum=0.100;QD=12.62;ReadPosRankSum=1.715;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:1,207:210:99:2683,294,0 chrVII 386563 . T C 2308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=207;Dels=0.00;FS=6.082;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=2;MQRankSum=0.172;QD=11.15;ReadPosRankSum=2.966;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:5,202:207:99:2341,273,0 chrVII 386581 . G A 2381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=30.55;MQ0=2;MQRankSum=0.277;QD=11.79;ReadPosRankSum=0.901;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:3,199:202:99:2414,261,0 chrVII 386593 . C T 2224 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=33.10;MQ0=2;QD=11.46;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:2257,246,0 chrVII 386596 . C T 2066 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.8410;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=2;QD=10.82;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:2099,237,0 chrVII 386608 . G A 2669 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.8707;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=2;QD=13.15;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:2702,297,0 chrVII 386978 . C G 4429.01 filter AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=13;QD=16.59;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:0,262:267:99:4429,504,0 chrVII 386979 . G C 4436.01 filter AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=13;QD=16.87;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:0,259:263:99:4436,501,0 chrVII 387163 . C T 5757.01 filter AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=4;QD=21.01;SB=-3.278e+03 GT:AD:DP:GQ:PL 1/1:0,268:274:99:5757,619,0 chrVII 387205 . C A 4311.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=14.9732;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=2;QD=18.83;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4311,486,0 chrVII 387637 . T C 7126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=331;Dels=0.00;FS=4.693;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.987;QD=21.53;ReadPosRankSum=1.711;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:1,329:331:99:7126,813,0 chrVII 387793 . T C 4498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=193;Dels=0.00;FS=8.420;HaplotypeScore=10.5455;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.358;QD=23.31;ReadPosRankSum=2.346;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:2,187:193:99:4498,498,0 chrVII 387970 . T A 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-0.140;QD=22.30;ReadPosRankSum=1.709;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3300,354,0 chrVII 387977 . T C 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.151;QD=21.00;ReadPosRankSum=1.662;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3162,351,0 chrVII 388177 . G A 3217.04 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.82;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3250,348,0 chrVII 388315 . T C 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=163;Dels=0.00;FS=5.286;HaplotypeScore=8.7895;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.857;QD=23.64;ReadPosRankSum=2.895;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:3,159:163:99:3853,447,0 chrVII 388573 . A G 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.548;DP=140;Dels=0.00;FS=8.059;HaplotypeScore=10.1904;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.134;QD=20.19;ReadPosRankSum=3.784;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:5,135:140:99:2859,318,0 chrVII 388627 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.28;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2345,252,0 chrVII 388756 . G A 1812 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.32;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1845,198,0 chrVII 389105 . G A 4341.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.0942;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.85;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4341,457,0 chrVII 389508 . T C 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=164;Dels=0.00;FS=3.033;HaplotypeScore=17.5375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.822;QD=21.73;ReadPosRankSum=2.359;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3563,411,0 chrVII 389574 . A T 3566.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.5558;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.16;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3566,393,0 chrVII 389751 . A G 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=3.534;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.650;QD=23.16;ReadPosRankSum=-1.496;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4077,459,0 chrVII 390097 . T G 3619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.841;DP=165;Dels=0.00;FS=21.605;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.372;QD=21.93;ReadPosRankSum=4.130;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:6,158:165:99:3619,414,0 chrVII 390234 . T A 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=161;Dels=0.00;FS=2.916;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.114;QD=24.82;ReadPosRankSum=2.373;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3996,429,0 chrVII 390274 . A T 4055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=4.090;HaplotypeScore=8.5924;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.296;QD=25.34;ReadPosRankSum=1.710;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:4055,432,0 chrVII 390472 . C G 3524.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3524,393,0 chrVII 390631 . T C 3728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=162;Dels=0.00;FS=5.610;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.131;QD=23.01;ReadPosRankSum=2.932;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:3728,414,0 chrVII 390676 . T G 3455.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.16;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3455,381,0 chrVII 390711 . C T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.62;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3330,357,0 chrVII 390756 . A G 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.347;QD=21.79;ReadPosRankSum=1.655;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2974,339,0 chrVII 390836 . C T 4206.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.19;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4206,439,0 chrVII 390865 . A G 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.230;QD=21.92;ReadPosRankSum=1.690;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3683,405,0 chrVII 390921 . T C 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=156;Dels=0.00;FS=6.103;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.155;QD=22.29;ReadPosRankSum=2.942;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:3477,393,0 chrVII 391138 . G T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.35;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3726,399,0 chrVII 391186 . T C 3915.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.32;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3915,447,0 chrVII 391249 . G A 3798.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.74;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3798,408,0 chrVII 391279 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.3001;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.83;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3406,375,0 chrVII 391475 . T A 4031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=177;Dels=0.00;FS=3.004;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.631;QD=22.77;ReadPosRankSum=2.366;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4031,432,0 chrVII 391496 . A C 3983.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.4974;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.07;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:3983,462,0 chrVII 391624 . T C 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.270;DP=185;Dels=0.00;FS=9.062;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-1.856;QD=20.33;ReadPosRankSum=3.374;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:4,180:185:99:3761,429,0 chrVII 391649 . C T 3866.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.9625;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.60;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3866,411,0 chrVII 392010 . G A 3121 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3154,348,0 chrVII 392315 . T C 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.7979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.659;QD=21.87;ReadPosRankSum=1.677;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4133,468,0 chrVII 392382 . G A 3826.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.49;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3826,411,0 chrVII 392603 . T C 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=134;Dels=0.00;FS=4.518;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.404;QD=23.09;ReadPosRankSum=1.654;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3127,351,0 chrVII 393110 . T C 4004.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.18;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4004,447,0 chrVII 393326 . T C 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.349;DP=176;Dels=0.00;FS=9.095;HaplotypeScore=16.0178;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.035;QD=22.70;ReadPosRankSum=3.349;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:4,170:176:99:3996,456,0 chrVII 393416 . G A 4705.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4705,522,0 chrVII 393726 . G A 3302.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.44;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3302,357,0 chrVII 393780 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.95;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2667,294,0 chrVII 393782 . A G 2569 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.61;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2602,294,0 chrVII 394219 . T C 5037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.297;DP=234;Dels=0.00;FS=5.230;HaplotypeScore=12.0628;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=1.553;QD=21.53;ReadPosRankSum=3.334;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:4,230:234:99:5037,567,0 chrVII 394369 . A G 3992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=187;Dels=0.00;FS=3.081;HaplotypeScore=13.8396;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-1.565;QD=21.35;ReadPosRankSum=1.714;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3992,456,0 chrVII 394426 . A G 4510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.454;QD=21.27;ReadPosRankSum=1.699;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4510,507,0 chrVII 394511 . T A 2110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=7.196;HaplotypeScore=6.2597;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=0.357;QD=10.82;ReadPosRankSum=1.625;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,193:195:99:2143,231,0 chrVII 394523 . T C 1629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=183;Dels=0.00;FS=6.508;HaplotypeScore=10.1681;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.977;QD=8.90;ReadPosRankSum=1.674;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:1,178:183:99:1662,192,0 chrVII 394550 . G C 1432 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.9227;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=9.24;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:1465,165,0 chrVII 394643 . A G 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.767;DP=118;Dels=0.00;FS=7.821;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=2.031;QD=21.25;ReadPosRankSum=3.767;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:5,113:118:99:2540,288,0 chrVII 394661 . A G 2019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=-0.628;QD=21.95;ReadPosRankSum=1.656;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2052,225,0 chrVII 394889 . C A 261 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.45;MQ0=0;QD=9.32;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:33:294,33,0 chrVII 394918 . G A 219.01 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;QD=4.66;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:27:252,27,0 chrVII 394922 . G C 203.01 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=3.98;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:27:236,27,0 chrVII 394946 . A G 259 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=4.39;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:33:292,33,0 chrVII 394959 . T G 259.41 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.367;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.4017;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=0;MQRankSum=1.207;QD=3.93;ReadPosRankSum=1.417;SB=-1.054e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:13:292,13,0 chrVII 395239 . A G 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=135;Dels=0.00;FS=8.618;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=1.330;QD=20.67;ReadPosRankSum=2.395;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2824,318,0 chrVII 395241 . C G 2805 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.93;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2838,315,0 chrVII 395359 . C T 4052.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.98;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4052,432,0 chrVII 395552 . T C 2701 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.16;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2734,309,0 chrVII 395553 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.68;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2827,312,0 chrVII 395608 . G T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.07;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3331,360,0 chrVII 395846 . A T 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=101;Dels=0.00;FS=2.900;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.597;QD=23.06;ReadPosRankSum=2.401;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2362,261,0 chrVII 396197 . G A 4259.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.6885;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.76;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4259,465,0 chrVII 396269 . A G 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.215;DP=153;Dels=0.00;FS=8.186;HaplotypeScore=18.2774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.365;QD=20.52;ReadPosRankSum=3.366;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:4,147:153:99:3173,369,0 chrVII 396578 . G A 4740.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=22.57;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4740,499,0 chrVII 396581 . C T 4571.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.87;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4571,490,0 chrVII 397325 . T C 4067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.5782;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.423;QD=22.47;ReadPosRankSum=1.674;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4067,462,0 chrVII 397441 . G A 5431.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.93;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5431,588,0 chrVII 397742 . T C 2165 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7225;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.09;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2198,249,0 chrVII 397916 . C T 2164 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.64;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2197,243,0 chrVII 397937 . A G 2182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=102;Dels=0.00;FS=8.865;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.361;QD=21.39;ReadPosRankSum=2.400;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:2,97:102:99:2215,246,0 chrVII 398129 . C G 3906.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=19.3292;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.07;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:3906,438,0 chrVII 398227 . G A 5094.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,206:210:99:5094,546,0 chrVII 399494 . T C 4075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.761;QD=21.45;ReadPosRankSum=1.714;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4075,453,0 chrVII 399537 . T A 5763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.553;QD=23.91;ReadPosRankSum=1.660;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5763,622,0 chrVII 400162 . T C 2246 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.8065;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2279,255,0 chrVII 400432 . A G 156.06 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.61;SB=-1.159e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:189,21,0 chrVII 400572 . A T 204.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DP=35;Dels=0.03;FS=18.742;HaplotypeScore=4.9783;MLEAC=1;MLEAF=0.500;MQ=55.15;MQ0=0;MQRankSum=-0.991;QD=5.83;ReadPosRankSum=-3.044;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:17,17:34:99:234,0,152 chrVII 400577 . G T 66.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132;DP=27;Dels=0.00;FS=10.588;HaplotypeScore=2.9906;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=0;MQRankSum=0.108;QD=2.44;ReadPosRankSum=-4.150;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,9:27:96:96,0,193 chrVII 401117 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3611,405,0 chrVII 401617 . G T 654 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.16;MQ0=0;QD=12.58;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:75:687,75,0 chrVII 401621 . T G 425 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.69;MQ0=0;QD=9.88;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:51:458,51,0 chrVII 401919 . G A 1318 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;QD=19.10;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1351,147,0 chrVII 402038 . T C 96.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.576;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=33.6335;MLEAC=1;MLEAF=0.500;MQ=32.62;MQ0=5;MQRankSum=2.643;QD=2.23;ReadPosRankSum=2.155;SB=0.163 GT:AD:DP:GQ:PL 0/1:9,33:43:58:126,0,58 chrVII 402056 . G A 241.19 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.743;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=24.1540;MLEAC=2;MLEAF=1.00;MQ=26.77;MQ0=4;MQRankSum=-0.619;QD=7.54;ReadPosRankSum=0.000;SB=-1.202e+00 GT:AD:DP:GQ:PL 1/1:5,27:32:8:273,8,0 chrVII 402057 . C T 243.79 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.114;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.77;MQ0=4;MQRankSum=-0.124;QD=7.62;ReadPosRankSum=-0.248;SB=-7.983e-01 GT:AD:DP:GQ:PL 1/1:4,27:32:10:276,10,0 chrVII 402058 . T A 235.45 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.20;MQ0=3;MQRankSum=-0.743;QD=7.60;ReadPosRankSum=-0.495;SB=-1.465e+00 GT:AD:DP:GQ:PL 1/1:4,27:31:7:267,7,0 chrVII 402066 . A T 218.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.281;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=1;MQRankSum=-1.734;QD=9.08;ReadPosRankSum=-1.281;SB=-3.020e+00 GT:AD:DP:GQ:PL 1/1:2,22:24:3:248,3,0 chrVII 402068 . G T 212.12 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.377;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;MQRankSum=-1.734;QD=9.22;ReadPosRankSum=-1.281;SB=-2.134e+00 GT:AD:DP:GQ:PL 1/1:1,22:23:5:243,5,0 chrVII 402070 . T C 208.76 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.289;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;MQRankSum=0.867;QD=8.70;ReadPosRankSum=-1.734;SB=-2.377e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:6:240,6,0 chrVII 402072 . G A 223.19 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.722;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;MQRankSum=-0.722;QD=9.30;ReadPosRankSum=-1.734;SB=-2.320e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:8:255,8,0 chrVII 402073 . A T 222.76 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;MQRankSum=-1.589;QD=9.28;ReadPosRankSum=-1.589;SB=-2.377e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:6:254,6,0 chrVII 402084 . G A 220.12 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.124;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=1;MQRankSum=-1.609;QD=7.59;ReadPosRankSum=-1.486;SB=-1.361e+02 GT:AD:DP:GQ:PL 1/1:1,28:29:5:251,5,0 chrVII 402086 . G A 207.45 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.578;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=1;MQRankSum=0.693;QD=6.48;ReadPosRankSum=-1.386;SB=-1.605e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:7:239,7,0 chrVII 402365 . G A 673 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=3;QD=13.73;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:75:706,75,0 chrVII 402373 . C T 705 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.02;MQ0=1;QD=15.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:47:84:738,84,0 chrVII 402388 . G A 774 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;QD=16.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:87:807,87,0 chrVII 402403 . C T 717.08 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.416;DP=56;Dels=0.00;FS=11.461;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=0;MQRankSum=2.943;QD=12.81;ReadPosRankSum=2.656;SB=-9.252e-02 GT:AD:DP:GQ:PL 1/1:4,52:56:20:750,20,0 chrVII 402414 . A G 550.09 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;DP=56;Dels=0.00;FS=9.622;HaplotypeScore=44.6512;MLEAC=1;MLEAF=0.500;MQ=28.77;MQ0=0;MQRankSum=0.661;QD=9.82;ReadPosRankSum=2.470;SB=-3.102e+00 GT:AD:DP:GQ:PL 0/1:6,49:56:14:580,0,14 chrVII 402421 . T A 129.13 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=43.1285;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=2.39;SB=-8.014e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:18:162,18,0 chrVII 402454 . T C 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.789;DP=68;Dels=0.00;FS=106.135;HaplotypeScore=4.8325;MLEAC=1;MLEAF=0.500;MQ=27.93;MQ0=1;MQRankSum=0.561;QD=0.85;ReadPosRankSum=-2.301;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,30:68:88:88,0,795 chrVII 402469 . G A 780.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=55;Dels=0.00;FS=71.787;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=1;MQRankSum=0.913;QD=14.18;ReadPosRankSum=4.060;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:17,38:55:25:813,25,0 chrVII 402508 . A T 722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.773;DP=69;Dels=0.00;FS=3.431;HaplotypeScore=3.5176;MLEAC=2;MLEAF=1.00;MQ=26.42;MQ0=1;MQRankSum=2.512;QD=10.46;ReadPosRankSum=1.379;SB=-4.200e+01 GT:AD:DP:GQ:PL 1/1:37,32:69:56:755,56,0 chrVII 402613 . A G 67.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=25;Dels=0.00;FS=6.990;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=0;MQRankSum=1.595;QD=2.70;ReadPosRankSum=1.595;SB=-1.015e+02 GT:AD:DP:GQ:PL 1/1:1,24:25:12:100,12,0 chrVII 402617 . C T 94.27 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.367;DP=24;Dels=0.00;FS=51.290;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.233;QD=3.93;ReadPosRankSum=-0.033;SB=-3.146e+00 GT:AD:DP:GQ:PL 0/1:18,6:24:9:124,0,9 chrVII 402623 . C T 128.46 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.811;DP=23;Dels=0.00;FS=59.123;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.094;QD=5.59;ReadPosRankSum=0.724;SB=-4.452e+00 GT:AD:DP:GQ:PL 0/1:14,9:23:1:157,0,1 chrVII 402628 . T A 161.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=20;Dels=0.00;FS=49.656;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.113;QD=8.05;ReadPosRankSum=1.701;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:10,10:20:21:194,21,0 chrVII 402643 . G A 327 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=14.22;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:39:360,39,0 chrVII 402649 . T C 397 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.041;DP=34;Dels=0.00;FS=92.686;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;MQRankSum=0.971;QD=11.68;ReadPosRankSum=3.191;SB=-6.640e-03 GT:AD:DP:GQ:PL 1/1:15,19:34:48:430,48,0 chrVII 402654 . A G 378.33 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.117;DP=35;Dels=0.00;FS=95.116;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=0;MQRankSum=1.383;QD=10.81;ReadPosRankSum=2.783;SB=-3.392e-01 GT:AD:DP:GQ:PL 1/1:15,20:35:14:411,14,0 chrVII 402678 . T C 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.984;DP=56;Dels=0.00;FS=115.415;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.21;MQ0=0;MQRankSum=0.754;QD=0.19;ReadPosRankSum=0.312;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:27,29:56:40:40,0,501 chrVII 402684 . C A 456.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.719;DP=72;Dels=0.00;FS=98.749;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.42;MQ0=0;MQRankSum=2.768;QD=6.33;ReadPosRankSum=1.053;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,25:72:99:486,0,256 chrVII 402691 . C A,G 913.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.20;MQ0=0;QD=10.74;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/2:0,25,60:85:99:973,475,415,498,0,429 chrVII 402692 . A G 1063 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;QD=12.22;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1096,129,0 chrVII 402701 . T G 300.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.917;DP=114;Dels=0.00;FS=84.737;HaplotypeScore=7.2659;MLEAC=1;MLEAF=0.500;MQ=29.77;MQ0=0;MQRankSum=1.479;QD=2.63;ReadPosRankSum=-3.280;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,25:114:99:330,0,941 chrVII 402702 . G A 957.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;DP=114;Dels=0.00;FS=84.737;HaplotypeScore=7.2659;MLEAC=1;MLEAF=0.500;MQ=29.77;MQ0=0;MQRankSum=-0.993;QD=8.39;ReadPosRankSum=4.102;SB=-7.010e+02 GT:AD:DP:GQ:PL 0/1:25,89:114:99:987,0,352 chrVII 402745 . C T 2463 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.37;MQ0=0;QD=20.19;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2496,273,0 chrVII 402869 . T C 1713 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=29.95;MQ0=0;QD=18.22;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1746,198,0 chrVII 402981 . C T 1644 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=0;QD=21.35;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1677,189,0 chrVII 402984 . G T 1537 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=32.51;MQ0=0;QD=19.96;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1570,174,0 chrVII 402990 . C T 1243 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.97;MQ0=0;QD=19.73;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1276,135,0 chrVII 402992 . A G 1121 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;MQRankSum=-1.118;QD=18.08;ReadPosRankSum=1.621;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1154,129,0 chrVII 402996 . T C 1045 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1078,120,0 chrVII 402997 . T A 1108 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1141,120,0 chrVII 403006 . A C 694 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:81:727,81,0 chrVII 403008 . C T 728 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:81:761,81,0 chrVII 403010 . A G 687 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:81:720,81,0 chrVII 403011 . T G 684 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:81:717,81,0 chrVII 403012 . T C 708 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.083;QD=16.86;ReadPosRankSum=1.650;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,41:42:81:741,81,0 chrVII 403018 . A G 701 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=25.53;MQ0=0;QD=12.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:81:734,81,0 chrVII 403020 . C T 576 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=25.71;MQ0=0;QD=9.60;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:72:609,72,0 chrVII 403069 . A C 459 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=7;MQRankSum=-0.094;QD=7.40;ReadPosRankSum=1.669;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:1,61:62:57:492,57,0 chrVII 404288 . G A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:56,6,0 chrVII 404404 . G A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.78;MQ0=15;QD=1.18;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,21:21:6:56,6,0 chrVII 404661 . G A 102.26 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.17;MQ0=4;QD=4.87;SB=-5.030e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:15:135,15,0 chrVII 404665 . G A 78.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;DP=23;Dels=0.00;FS=40.655;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.03;MQ0=4;MQRankSum=3.194;QD=3.39;ReadPosRankSum=-2.731;SB=-2.752e+00 GT:AD:DP:GQ:PL 0/1:14,9:23:32:108,0,32 chrVII 405296 . T A 1070 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=8;QD=15.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,63:68:99:1103,114,0 chrVII 405315 . T C 1385 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=8;MQRankSum=-1.732;QD=17.10;ReadPosRankSum=1.685;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,75:81:99:1418,159,0 chrVII 405345 . G A 903 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=5;QD=12.90;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,68:70:99:936,102,0 chrVII 405346 . G A 907 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.05;MQ0=5;QD=13.54;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,63:67:99:940,102,0 chrVII 405349 . G T 834 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=4;QD=11.75;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,69:71:93:867,93,0 chrVII 405432 . C T 2595 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=22.96;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2628,279,0 chrVII 405433 . T A 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=0.517;QD=21.30;ReadPosRankSum=1.702;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2461,279,0 chrVII 405802 . A G 5029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.477;DP=220;Dels=0.00;FS=5.235;HaplotypeScore=19.1626;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.279;QD=22.86;ReadPosRankSum=1.716;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,216:220:99:5029,561,0 chrVII 406015 . C G 5218.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=20.0978;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5218,582,0 chrVII 406378 . C T 3918.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.04;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3918,420,0 chrVII 407124 . G A 4386.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.9482;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4386,466,0 chrVII 408078 . G A 3568.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.62;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3568,396,0 chrVII 408328 . G A 4538.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.2709;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.76;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4538,478,0 chrVII 408490 . G A 4334.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.4708;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.46;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4334,468,0 chrVII 408708 . G A 3280.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.01;FS=0.000;HaplotypeScore=7.0844;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=18.02;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3280,360,0 chrVII 408709 . A C 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.601;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8731;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.203;QD=17.24;ReadPosRankSum=2.667;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:4,181:186:99:3240,369,0 chrVII 408767 . G A 3987.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.0313;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=19.54;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:3987,423,0 chrVII 408864 . G A 3650.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.96;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3650,399,0 chrVII 408942 . C T 3276.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.57;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3276,348,0 chrVII 409104 . T C 2094 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.21;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2127,237,0 chrVII 410420 . C T 2353 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.79;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2386,255,0 chrVII 410531 . G A 2732 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.6924;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.18;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2765,312,0 chrVII 410597 . G A 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=129;Dels=0.00;FS=5.563;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.045;QD=23.64;ReadPosRankSum=1.622;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3083,321,0 chrVII 410962 . C T 4246.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.21;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4246,448,0 chrVII 411334 . T C 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.039;QD=21.92;ReadPosRankSum=0.640;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2883,324,0 chrVII 411540 . C A 3168 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.82;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3201,339,0 chrVII 411573 . G A 3165 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=15.7540;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.16;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3198,339,0 chrVII 412574 . G T 3373.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3373,354,0 chrVII 412672 . T C 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.063;QD=21.85;ReadPosRankSum=1.701;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2436,276,0 chrVII 412803 . C A 3775.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=25.51;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3775,396,0 chrVII 413280 . G A 7373.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=19.2228;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.74;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,294:298:99:7373,796,0 chrVII 413465 . G A 5568.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=13.4398;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.40;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:5568,621,0 chrVII 413616 . T A 3364.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.64;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3364,363,0 chrVII 413728 . C G 3137 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.73;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3170,357,0 chrVII 413797 . C T 2169 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.1035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2202,231,0 chrVII 414518 . C T 5402.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=17.4956;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.80;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5402,594,0 chrVII 414653 . G A 3720.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.55;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3720,402,0 chrVII 414778 . C A 3454.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3454,384,0 chrVII 414872 . C T 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.379;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8318;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.237;QD=21.54;ReadPosRankSum=1.426;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3242,351,0 chrVII 415023 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.14;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3404,360,0 chrVII 415124 . A G 3058 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3091,345,0 chrVII 415592 . A G 4098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=204;Dels=0.00;FS=3.298;HaplotypeScore=12.9821;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.145;QD=20.09;ReadPosRankSum=1.715;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4098,477,0 chrVII 416333 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.400;QD=20.69;ReadPosRankSum=0.425;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3559,402,0 chrVII 417294 . A G 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.304;DP=172;Dels=0.00;FS=4.848;HaplotypeScore=16.9438;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.367;QD=21.78;ReadPosRankSum=2.932;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:4,165:172:99:3746,420,0 chrVII 417363 . G A 4146.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.29;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4146,459,0 chrVII 417671 . A G 4187.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.0719;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.13;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,176:181:99:4187,471,0 chrVII 417863 . C T 5712.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.0421;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.80;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5712,627,0 chrVII 418253 . G A 4948.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.2525;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4948,532,0 chrVII 418292 . A T 5316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=216;Dels=0.00;FS=10.370;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.144;QD=24.61;ReadPosRankSum=2.940;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:3,213:216:99:5316,571,0 chrVII 418502 . A G 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.1544;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.760;QD=21.41;ReadPosRankSum=1.690;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3533,402,0 chrVII 419249 . C G 3477.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.88;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3477,384,0 chrVII 419557 . C T 4201.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;QD=24.57;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4201,447,0 chrVII 420974 . T C 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=3.048;HaplotypeScore=7.2541;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.703;QD=22.89;ReadPosRankSum=2.362;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2620,294,0 chrVII 421036 . C T 3173 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.50;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3206,345,0 chrVII 421235 . T C 3017 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=24.14;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3050,336,0 chrVII 421272 . A G 2366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=4.510;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;MQRankSum=-0.782;QD=20.94;ReadPosRankSum=1.701;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2399,273,0 chrVII 421291 . G A 2039 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=17.89;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2072,225,0 chrVII 421299 . G A 1769 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;QD=15.65;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1802,204,0 chrVII 421321 . C T 2045 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=17.33;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2078,219,0 chrVII 421465 . C T 2755 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=19.13;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2788,300,0 chrVII 421471 . A G 2441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=3.231;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;MQRankSum=-0.283;QD=17.31;ReadPosRankSum=1.658;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2474,276,0 chrVII 421478 . T G 2492 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=17.31;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2525,285,0 chrVII 421678 . C T 2860 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=114.7786;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=20.43;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2893,315,0 chrVII 421865 . A G 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=3.718;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.577;QD=23.24;ReadPosRankSum=1.664;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3555,399,0 chrVII 421889 . T C 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=164;Dels=0.00;FS=5.867;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-0.920;QD=21.01;ReadPosRankSum=2.835;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3445,387,0 chrVII 421943 . A G 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=1.322;QD=21.58;ReadPosRankSum=1.709;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3301,372,0 chrVII 422059 . T G 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=135;Dels=0.00;FS=4.111;HaplotypeScore=7.4934;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.370;QD=21.73;ReadPosRankSum=1.655;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2967,333,0 chrVII 422202 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=24.28;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3117,330,0 chrVII 422236 . G T 2624 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=22.62;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2657,285,0 chrVII 422386 . C T 2514 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=47.71;MQ0=0;QD=18.22;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2547,273,0 chrVII 422415 . G T 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.005;DP=143;Dels=0.01;FS=63.159;HaplotypeScore=27.5249;MLEAC=1;MLEAF=0.500;MQ=44.13;MQ0=0;MQRankSum=1.887;QD=0.11;ReadPosRankSum=-4.498;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:118,23:142:45:45,0,900 chrVII 422434 . A G 1149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.9549;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;MQRankSum=-1.510;QD=10.54;ReadPosRankSum=1.700;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1182,132,0 chrVII 422440 . G C 1221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.022;DP=120;Dels=0.01;FS=3.522;HaplotypeScore=16.3528;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;MQRankSum=-0.104;QD=10.17;ReadPosRankSum=1.436;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:1254,147,0 chrVII 422454 . C G 1724 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=12.68;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:1757,198,0 chrVII 422564 . C T 3594.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.8854;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=24.12;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3594,390,0 chrVII 422588 . T C 3777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=0.428;QD=22.09;ReadPosRankSum=1.671;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3777,423,0 chrVII 422613 . G A 3183 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=19.89;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3216,345,0 chrVII 422776 . T C 3357.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.31;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3357,384,0 chrVII 422836 . T A 3039 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=26.20;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3072,324,0 chrVII 422866 . T A 2975 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;QD=24.39;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3008,324,0 chrVII 422918 . C G 2999 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=22.55;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3032,345,0 chrVII 422951 . G A 3075 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=21.81;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3108,348,0 chrVII 423035 . T C 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.8059;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-1.386;QD=23.11;ReadPosRankSum=1.652;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3037,348,0 chrVII 423215 . T C 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=134;Dels=0.01;FS=3.216;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.640;QD=22.32;ReadPosRankSum=1.705;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3024,333,0 chrVII 423339 . C T 4185.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.02;FS=0.000;HaplotypeScore=15.6514;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=24.62;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4185,447,0 chrVII 423396 . T C 2895 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.77;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2928,333,0 chrVII 423472 . A C 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=15.1683;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.188;QD=21.87;ReadPosRankSum=1.622;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3477,387,0 chrVII 423778 . C A 1703 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=20.77;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1736,186,0 chrVII 423906 . G A 2474 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.79;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2507,270,0 chrVII 423934 . C A 1966 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.37;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1999,222,0 chrVII 424042 . A G 2723 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.47;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2756,312,0 chrVII 424204 . G T 4159.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.2118;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.36;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4159,444,0 chrVII 424327 . A T 3379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=1.048;QD=21.52;ReadPosRankSum=1.666;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3379,357,0 chrVII 424338 . A G 3158 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.51;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3191,360,0 chrVII 424620 . C T 2956 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.28;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2989,321,0 chrVII 424652 . A C 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.428;QD=22.19;ReadPosRankSum=0.844;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2651,294,0 chrVII 424942 . A T 2205 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.20;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2238,249,0 chrVII 425130 . A T 3035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=6.095;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.352;QD=25.50;ReadPosRankSum=1.703;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:3068,330,0 chrVII 425181 . C T 2482 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.42;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2515,270,0 chrVII 425227 . G C 2756 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.53;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2789,312,0 chrVII 425325 . T A 3739.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.01;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3739,402,0 chrVII 425446 . A C 2726 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.81;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2759,315,0 chrVII 425497 . A G 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=131;Dels=0.00;FS=3.027;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.974;QD=22.95;ReadPosRankSum=2.393;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3040,339,0 chrVII 426119 . C T 4026.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.49;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4026,429,0 chrVII 426136 . C T 3763.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5413;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.14;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3763,411,0 chrVII 426211 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.30;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3262,378,0 chrVII 426538 . G T 2941 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.71;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2974,321,0 chrVII 426675 . T C 3358.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.3859;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.69;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3358,375,0 chrVII 426969 . G T 3525.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.6509;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.34;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3525,390,0 chrVII 427600 . A G 4314.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.1090;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.79;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4314,489,0 chrVII 427741 . G A 3840.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3840,417,0 chrVII 428022 . C T 1032 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.64;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1065,123,0 chrVII 428152 . A G 1173 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.44;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1206,144,0 chrVII 428325 . C G 1176 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.00;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1209,135,0 chrVII 428363 . G A 1153 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.23;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1186,126,0 chrVII 428397 . T C 556 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=13.90;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:69:589,69,0 chrVII 428441 . T C 940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=1;MQRankSum=0.845;QD=20.00;ReadPosRankSum=2.847;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:3,44:47:99:973,111,0 chrVII 428542 . C G 2521 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=24.96;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2554,285,0 chrVII 428698 . A T 3086 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=22.36;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3119,327,0 chrVII 428728 . T A 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=3.383;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-1.115;QD=19.07;ReadPosRankSum=1.708;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2836,300,0 chrVII 428729 . T C 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=3.394;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=-0.707;QD=18.50;ReadPosRankSum=1.683;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2679,300,0 chrVII 428850 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=148;Dels=0.00;FS=2.877;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.006;QD=22.47;ReadPosRankSum=2.415;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:2,142:148:99:3326,375,0 chrVII 428940 . C T 3725.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=16.5886;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.99;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3725,399,0 chrVII 429150 . G C 3434.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3434,384,0 chrVII 429467 . A T 3466.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3466,369,0 chrVII 429706 . A C 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=146;Dels=0.00;FS=3.620;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.398;QD=22.48;ReadPosRankSum=1.708;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3282,366,0 chrVII 429786 . A G 4436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=3.010;HaplotypeScore=149.1200;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.460;QD=22.63;ReadPosRankSum=1.714;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4436,519,0 chrVII 429811 . T C 3906.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.2215;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.78;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3906,441,0 chrVII 429941 . T C 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.5254;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.207;QD=20.63;ReadPosRankSum=0.883;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3301,363,0 chrVII 430401 . G A 1614 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.42;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1647,177,0 chrVII 430509 . T C 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.218;QD=23.57;ReadPosRankSum=1.674;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2861,324,0 chrVII 430559 . A G 2763 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.02;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2796,321,0 chrVII 430810 . T C 5120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.117;DP=229;Dels=0.01;FS=7.422;HaplotypeScore=34.2884;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.712;QD=22.36;ReadPosRankSum=4.117;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:6,221:227:99:5120,570,0 chrVII 430867 . G A 5130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=189.7839;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=1.535;QD=19.43;ReadPosRankSum=1.548;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:1,263:264:99:5130,547,0 chrVII 430953 . A C 5297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=256;Dels=0.01;FS=3.027;HaplotypeScore=26.2628;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.082;QD=20.69;ReadPosRankSum=2.430;SB=-3.116e+03 GT:AD:DP:GQ:PL 1/1:2,251:254:99:5297,612,0 chrVII 431116 . T C 3694.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.47;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3694,417,0 chrVII 431124 . A G 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=207;Dels=0.00;FS=2.554;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.146;QD=17.30;ReadPosRankSum=2.868;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:3,203:207:99:3581,402,0 chrVII 431168 . G C 2744 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=17.93;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2777,306,0 chrVII 431867 . A G 4458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=186;Dels=0.00;FS=3.154;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.113;QD=23.97;ReadPosRankSum=1.638;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4458,495,0 chrVII 432654 . G A 4153.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.8677;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.15;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4153,450,0 chrVII 432913 . C A 5045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=9.6492;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=0.077;QD=20.34;ReadPosRankSum=0.302;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:1,246:248:99:5045,552,0 chrVII 432925 . A T 4696.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=20.15;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4696,510,0 chrVII 432934 . A G 4197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=225;Dels=0.00;FS=3.912;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-1.345;QD=18.65;ReadPosRankSum=1.639;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:4197,471,0 chrVII 433211 . G A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.04;FS=0.000;HaplotypeScore=79.6069;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=0.27;SB=-7.888e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:6:57,6,0 chrVII 433212 . G A 62.51 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.03;FS=0.000;HaplotypeScore=78.7748;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=0.66;SB=-7.045e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:12:95,12,0 chrVII 433234 . A G 1704 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=16.38;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:1737,201,0 chrVII 433416 . T A 2437 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=21.95;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2470,267,0 chrVII 433865 . A T 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.180;DP=115;Dels=0.00;FS=5.346;HaplotypeScore=19.5529;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-1.609;QD=19.91;ReadPosRankSum=1.609;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2323,264,0 chrVII 433976 . A T 1851 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.30;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1884,201,0 chrVII 434135 . T C 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=151;Dels=0.00;FS=3.796;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.663;QD=21.24;ReadPosRankSum=1.686;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3240,378,0 chrVII 434327 . T C 4518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.6358;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;MQRankSum=0.052;QD=22.59;ReadPosRankSum=1.680;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4518,513,0 chrVII 434361 . T C 4485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.112;DP=197;Dels=0.00;FS=10.814;HaplotypeScore=7.9148;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;MQRankSum=0.818;QD=22.77;ReadPosRankSum=4.142;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:6,191:197:99:4485,513,0 chrVII 434403 . A G 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.01;FS=0.000;HaplotypeScore=9.1122;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;MQRankSum=-0.843;QD=22.44;ReadPosRankSum=1.714;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4241,483,0 chrVII 434442 . A G 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.1896;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;MQRankSum=-1.427;QD=21.13;ReadPosRankSum=1.710;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3359,384,0 chrVII 434447 . A G 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;MQRankSum=-1.268;QD=20.17;ReadPosRankSum=2.418;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3179,360,0 chrVII 434505 . A G 1945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;MQRankSum=-1.819;QD=16.07;ReadPosRankSum=2.409;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:1978,219,0 chrVII 434580 . G A 446 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;QD=3.81;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:51:479,51,0 chrVII 434630 . A G 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=35.72;MQ0=0;MQRankSum=1.388;QD=9.63;ReadPosRankSum=1.713;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:1776,195,0 chrVII 434654 . G A 2151 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=14.15;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2184,234,0 chrVII 434679 . C A 1638 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.09;MQ0=0;QD=12.50;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1671,180,0 chrVII 434692 . G A 1406 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.18;MQ0=0;QD=11.62;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1439,159,0 chrVII 434704 . T C 1118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=0;MQRankSum=0.107;QD=9.89;ReadPosRankSum=1.701;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1151,132,0 chrVII 434720 . A C 998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=110;Dels=0.01;FS=5.699;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=31.65;MQ0=0;MQRankSum=0.067;QD=9.07;ReadPosRankSum=1.699;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,103:109:99:1031,114,0 chrVII 434752 . C G 1665 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.90;MQ0=0;QD=11.73;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1698,192,0 chrVII 434758 . C A 1804 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=36.00;MQ0=0;QD=12.19;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:1837,201,0 chrVII 434905 . G A 3764.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=23.67;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3764,399,0 chrVII 435041 . G C 2782 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.92;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2815,312,0 chrVII 435054 . A G 2637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=1.233;QD=19.83;ReadPosRankSum=1.706;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2670,306,0 chrVII 435126 . T C 2944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=142;Dels=0.00;FS=10.404;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.193;QD=20.73;ReadPosRankSum=2.907;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:3,138:142:99:2977,330,0 chrVII 435215 . A C 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=128;Dels=0.00;FS=8.950;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-1.201;QD=23.37;ReadPosRankSum=2.373;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3025,339,0 chrVII 435340 . T C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=133;Dels=0.00;FS=7.559;HaplotypeScore=7.0823;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=0.878;QD=21.37;ReadPosRankSum=2.320;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2875,327,0 chrVII 435410 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.35;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2809,306,0 chrVII 435457 . C T 2072 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=19.01;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2105,234,0 chrVII 435514 . T C 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.587;QD=23.71;ReadPosRankSum=1.676;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2997,339,0 chrVII 435545 . A G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=7.686;HaplotypeScore=8.1782;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.636;QD=23.31;ReadPosRankSum=2.366;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2783,312,0 chrVII 435577 . T C 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.273;QD=21.58;ReadPosRankSum=1.661;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2148,246,0 chrVII 435609 . G A 2363 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.94;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2396,249,0 chrVII 435682 . T C 2439 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=123;Dels=0.00;FS=9.359;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.678;QD=19.83;ReadPosRankSum=2.943;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:3,119:123:99:2472,282,0 chrVII 435691 . T C 2328 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.56;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2361,267,0 chrVII 435692 . T C 2275 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=119;Dels=0.00;FS=6.124;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.805;QD=19.12;ReadPosRankSum=2.941;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2308,261,0 chrVII 435931 . T C 3751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-1.193;QD=22.46;ReadPosRankSum=1.649;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3751,432,0 chrVII 436038 . C T 4170.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.97;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4170,447,0 chrVII 436123 . G A 3580.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.5921;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.35;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3580,387,0 chrVII 436337 . G A 2263 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.57;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2296,249,0 chrVII 436601 . C T 3155 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.2189;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.61;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3188,339,0 chrVII 436775 . T C 4143.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.4434;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.04;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4143,459,0 chrVII 436994 . G A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3323,363,0 chrVII 437195 . A C 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.534;QD=22.77;ReadPosRankSum=1.680;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3084,345,0 chrVII 437304 . G A 2071 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3639;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.35;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2104,231,0 chrVII 437336 . T C 2237 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=21.30;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2270,258,0 chrVII 437348 . A G 2068 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=19.88;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2101,234,0 chrVII 437349 . G A 2112 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.50;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2145,234,0 chrVII 438009 . G T 3027 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.9544;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.09;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3060,330,0 chrVII 438031 . A G 3023 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.0678;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.85;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3056,339,0 chrVII 438333 . G T 4631.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.6200;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.93;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4631,484,0 chrVII 438674 . A G 2517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.686;DP=186;Dels=0.00;FS=2.249;HaplotypeScore=17.9485;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=1.560;QD=13.53;ReadPosRankSum=3.084;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:7,179:186:99:2550,288,0 chrVII 438688 . A G 1731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.473;DP=144;Dels=0.00;FS=2.334;HaplotypeScore=70.6038;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;MQRankSum=-1.433;QD=12.02;ReadPosRankSum=3.785;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:5,138:144:99:1764,204,0 chrVII 438728 . A T 1983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.6493;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-0.379;QD=13.13;ReadPosRankSum=1.709;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2016,225,0 chrVII 438750 . C A 2449 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=15.60;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2482,270,0 chrVII 438997 . G A 2750 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.12;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2783,297,0 chrVII 439033 . A G 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=135;Dels=0.00;FS=6.657;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.175;QD=23.00;ReadPosRankSum=2.413;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3138,366,0 chrVII 439216 . T C 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=3.266;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.386;QD=25.09;ReadPosRankSum=1.707;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3513,390,0 chrVII 439277 . C T 3132 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:3165,333,0 chrVII 439789 . A G 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=128;Dels=0.00;FS=4.082;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.947;QD=22.70;ReadPosRankSum=1.705;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2939,330,0 chrVII 439864 . A T 2208 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.30;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2241,243,0 chrVII 440586 . T C 1485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=3.399;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.90;MQ0=0;MQRankSum=0.940;QD=20.92;ReadPosRankSum=1.683;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1518,171,0 chrVII 440605 . G A 1378 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.74;MQ0=0;QD=19.14;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1411,156,0 chrVII 440621 . C T 1260 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=65.7139;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=0;QD=16.58;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1293,138,0 chrVII 440626 . C T 1126 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=69.5799;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=14.82;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1159,129,0 chrVII 440636 . A T 1017 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=13.93;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1050,114,0 chrVII 440671 . A G 777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=75;Dels=0.00;FS=3.699;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.50;MQ0=0;MQRankSum=1.132;QD=10.36;ReadPosRankSum=1.686;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:90:810,90,0 chrVII 440674 . T A 710 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;QD=9.86;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:81:743,81,0 chrVII 440683 . C A 596 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=8.51;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:69:629,69,0 chrVII 440689 . A C 637 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=7.121;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=0;MQRankSum=-1.628;QD=8.85;ReadPosRankSum=2.381;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:75:670,75,0 chrVII 440693 . T A 550 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=35.40;MQ0=0;QD=7.33;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:63:583,63,0 chrVII 440833 . C A 1618 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=22.47;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1651,180,0 chrVII 440838 . A G 1530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;MQRankSum=1.059;QD=21.25;ReadPosRankSum=1.684;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1563,180,0 chrVII 440879 . G C 1733 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.0611;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;QD=20.39;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1766,201,0 chrVII 440908 . G A 1918 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=20.85;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1951,213,0 chrVII 441362 . T C 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.219;QD=22.35;ReadPosRankSum=1.711;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3621,408,0 chrVII 441602 . G A 3478.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3478,372,0 chrVII 442010 . A C 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=0.229;QD=20.11;ReadPosRankSum=1.716;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4405,510,0 chrVII 442014 . T C 4469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=226;Dels=0.00;FS=6.530;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;MQRankSum=-0.441;QD=19.77;ReadPosRankSum=2.416;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:2,218:226:99:4469,501,0 chrVII 442175 . A C 2569.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.555;DP=253;Dels=0.00;FS=0.992;HaplotypeScore=16.7272;MLEAC=1;MLEAF=0.500;MQ=51.89;MQ0=0;MQRankSum=2.516;QD=10.15;ReadPosRankSum=2.386;SB=-1.374e+03 GT:AD:DP:GQ:PL 0/1:101,148:253:99:2599,0,1510 chrVII 442184 . A G 2057.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.283;DP=259;Dels=0.00;FS=2.098;HaplotypeScore=24.8554;MLEAC=1;MLEAF=0.500;MQ=51.66;MQ0=0;MQRankSum=1.081;QD=7.94;ReadPosRankSum=-0.279;SB=-1.114e+03 GT:AD:DP:GQ:PL 0/1:133,126:259:99:2087,0,2221 chrVII 442196 . G A 1421.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.082;DP=252;Dels=0.00;FS=9.366;HaplotypeScore=14.6172;MLEAC=1;MLEAF=0.500;MQ=50.55;MQ0=0;MQRankSum=0.101;QD=5.64;ReadPosRankSum=-3.177;SB=-7.470e+02 GT:AD:DP:GQ:PL 0/1:160,90:252:99:1451,0,2831 chrVII 442208 . A G 655.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.504;DP=267;Dels=0.00;FS=8.018;HaplotypeScore=9.5964;MLEAC=1;MLEAF=0.500;MQ=50.80;MQ0=0;MQRankSum=0.878;QD=2.45;ReadPosRankSum=-5.846;SB=-3.610e+02 GT:AD:DP:GQ:PL 0/1:200,67:267:99:685,0,3719 chrVII 442220 . A G 3740.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.745;DP=256;Dels=0.00;FS=11.525;HaplotypeScore=7.0600;MLEAC=1;MLEAF=0.500;MQ=50.44;MQ0=0;MQRankSum=-1.023;QD=14.61;ReadPosRankSum=6.659;SB=-2.121e+03 GT:AD:DP:GQ:PL 0/1:36,220:256:99:3740,0,212 chrVII 442235 . C A 4199.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.01;FS=0.000;HaplotypeScore=15.5159;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=16.86;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:4199,462,0 chrVII 442238 . C A 4155.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.01;FS=0.000;HaplotypeScore=15.5904;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=16.23;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:4155,456,0 chrVII 442299 . C G 5413.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=19.3496;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=18.67;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:0,289:290:99:5413,612,0 chrVII 442339 . A G 6840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=312;Dels=0.00;FS=4.232;HaplotypeScore=21.9808;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.257;QD=21.92;ReadPosRankSum=1.687;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:1,309:312:99:6840,792,0 chrVII 442559 . G A 7855.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=22.8058;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.52;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:0,333:334:99:7855,850,0 chrVII 442607 . C G 6377.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=18.8479;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.22;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,283:287:99:6377,714,0 chrVII 442784 . C T 4024.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.23;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4024,447,0 chrVII 442935 . C T 3345.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.89;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3345,369,0 chrVII 442968 . A T 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=125;Dels=0.00;FS=2.998;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=0.108;QD=23.77;ReadPosRankSum=2.391;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:3004,324,0 chrVII 442998 . T C 2187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.408;QD=21.03;ReadPosRankSum=1.698;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2220,255,0 chrVII 443007 . G A 2220 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.1079;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.14;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2253,249,0 chrVII 443095 . G A 2655 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.89;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2688,300,0 chrVII 443161 . C T 2356 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.80;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2389,258,0 chrVII 443525 . T A 3211.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=1.259;QD=23.11;ReadPosRankSum=1.607;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3245,348,0 chrVII 443602 . T C 3698.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.49;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3698,411,0 chrVII 443639 . G T 3625.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.09;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3625,396,0 chrVII 443945 . G A 4090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.079;DP=175;Dels=0.00;FS=3.188;HaplotypeScore=9.4980;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-1.099;QD=23.37;ReadPosRankSum=1.158;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4090,419,0 chrVII 443969 . C T 4180.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.4348;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=24.16;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4180,441,0 chrVII 443972 . G A 3992.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=22.55;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3992,432,0 chrVII 444070 . C A 5443.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.77;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5443,580,0 chrVII 444107 . C A 6155.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=19.9353;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.14;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:6155,687,0 chrVII 444185 . G C 5547.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=17.8198;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.33;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,257:260:99:5547,636,0 chrVII 444236 . C T 5338.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=9.7695;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.77;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:5338,579,0 chrVII 444248 . A G 4862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=244;Dels=0.00;FS=3.424;HaplotypeScore=9.2689;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.945;QD=19.93;ReadPosRankSum=1.689;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:1,241:244:99:4862,564,0 chrVII 444466 . T C 5134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.297;DP=236;Dels=0.00;FS=13.240;HaplotypeScore=14.3889;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.317;QD=21.75;ReadPosRankSum=3.371;SB=-2.790e+03 GT:AD:DP:GQ:PL 1/1:4,230:236:99:5134,579,0 chrVII 444896 . G A 2859 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.24;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2892,309,0 chrVII 444974 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3070,324,0 chrVII 445067 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=3.031;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.514;QD=23.59;ReadPosRankSum=2.415;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3326,369,0 chrVII 445136 . C T 2597 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.50;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2630,282,0 chrVII 445289 . A G 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=129;Dels=0.00;FS=2.888;HaplotypeScore=10.8603;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.595;QD=22.74;ReadPosRankSum=2.411;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:2,124:129:99:2966,333,0 chrVII 445967 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=24.23;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3231,342,0 chrVII 446000 . T C 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.123;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-1.554;QD=21.78;ReadPosRankSum=1.703;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,116:120:99:2647,303,0 chrVII 446059 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=3.816;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=1.013;QD=20.70;ReadPosRankSum=1.618;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3789,429,0 chrVII 446068 . C T 3958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.1751;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=1.061;QD=20.72;ReadPosRankSum=1.097;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3958,426,0 chrVII 446205 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=23.45;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3330,354,0 chrVII 446220 . A T 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=137;Dels=0.00;FS=9.523;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=1.971;QD=20.69;ReadPosRankSum=2.860;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2867,318,0 chrVII 446369 . G A 4311.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.08;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4311,459,0 chrVII 446399 . C T 4117.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.39;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4117,444,0 chrVII 446571 . G A 4262.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.94;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4262,456,0 chrVII 446904 . A G 4249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=6.9734;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-0.977;QD=18.08;ReadPosRankSum=1.717;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:4249,489,0 chrVII 446910 . G A 4480.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=5.4565;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.06;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:4480,480,0 chrVII 447534 . G A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.56;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3565,387,0 chrVII 447761 . G C 4614.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=18.7642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4614,513,0 chrVII 448053 . G A 5818.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=23.5564;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.21;SB=-3.159e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:5818,630,0 chrVII 448106 . T C 5052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=249;Dels=0.00;FS=3.189;HaplotypeScore=9.4027;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.810;QD=20.29;ReadPosRankSum=1.718;SB=-3.073e+03 GT:AD:DP:GQ:PL 1/1:1,247:249:99:5052,582,0 chrVII 448116 . G A 4616.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=19.00;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:4616,519,0 chrVII 448507 . G A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.7149;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.75;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3372,360,0 chrVII 448538 . T C 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=143;Dels=0.00;FS=9.482;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.169;QD=21.77;ReadPosRankSum=2.363;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3146,351,0 chrVII 449216 . T C 8985.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=410;Dels=0.00;FS=0.000;HaplotypeScore=19.9178;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.259;QD=21.91;ReadPosRankSum=1.698;SB=-4.953e+03 GT:AD:DP:GQ:PL 1/1:1,409:410:99:8985,1008,0 chrVII 449269 . G A 8679.01 filter AC=2;AF=1.00;AN=2;DP=413;Dels=0.00;FS=0.000;HaplotypeScore=17.3687;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.01;SB=-4.216e+03 GT:AD:DP:GQ:PL 1/1:0,411:413:99:8679,934,0 chrVII 449321 . G A 6987.01 PASS AC=2;AF=1.00;AN=2;DP=333;Dels=0.00;FS=0.000;HaplotypeScore=27.5869;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=20.98;SB=-3.502e+03 GT:AD:DP:GQ:PL 1/1:0,326:333:99:6987,751,0 chrVII 449525 . C T 4320.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=19.64;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4320,492,0 chrVII 449895 . G A 3440.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.6030;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.77;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3440,372,0 chrVII 450305 . G A 6363.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.05;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6363,688,0 chrVII 450372 . C G 7638.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=16.4187;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.08;SB=-4.189e+03 GT:AD:DP:GQ:PL 1/1:0,344:346:99:7638,870,0 chrVII 450623 . C G 5499.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=12.9757;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.40;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,254:257:99:5499,615,0 chrVII 451307 . A G 5585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=245;Dels=0.00;FS=5.613;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.469;QD=22.80;ReadPosRankSum=1.675;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,243:245:99:5585,633,0 chrVII 451921 . T C 8961.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=413;Dels=0.00;FS=2.647;HaplotypeScore=25.8810;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.367;QD=21.70;ReadPosRankSum=2.354;SB=-3.765e+03 GT:AD:DP:GQ:PL 1/1:2,410:413:99:8961,1005,0 chrVII 452296 . A C 6457.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=14.2285;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-3.174e+03 GT:AD:DP:GQ:PL 1/1:0,274:276:99:6457,735,0 chrVII 452811 . G A 4006.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.9260;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.43;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4006,423,0 chrVII 453255 . C T 5087.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=21.5571;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.02;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5087,547,0 chrVII 454662 . C T 1835 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1868,201,0 chrVII 455013 . G A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3312,360,0 chrVII 456180 . T C 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=127;Dels=0.00;FS=3.027;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.259;QD=22.73;ReadPosRankSum=2.391;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2920,327,0 chrVII 456812 . G A 3309.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.88;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3309,348,0 chrVII 457417 . A G 4469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=192;Dels=0.00;FS=3.199;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.437;QD=23.28;ReadPosRankSum=1.622;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:1,188:192:99:4469,501,0 chrVII 457721 . G A 3272.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.21;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3272,354,0 chrVII 459286 . G A 5391.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.37;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,238:241:99:5391,582,0 chrVII 459620 . G A 4937.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.74;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4937,531,0 chrVII 460330 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=164;Dels=0.00;FS=3.031;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.637;QD=21.55;ReadPosRankSum=2.420;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3535,411,0 chrVII 461146 . A G 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=189;Dels=0.00;FS=9.155;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.628;QD=22.42;ReadPosRankSum=3.394;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:4,181:189:99:4237,477,0 chrVII 461875 . G A 4789.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.4437;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.31;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4789,511,0 chrVII 466092 . T C 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=167;Dels=0.00;FS=3.001;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.405;QD=23.62;ReadPosRankSum=2.420;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3945,441,0 chrVII 466268 . A G 3916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.2770;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.039;QD=22.12;ReadPosRankSum=1.712;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3916,441,0 chrVII 467387 . T C 4549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=200;Dels=0.00;FS=2.570;HaplotypeScore=16.1808;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.916;QD=22.75;ReadPosRankSum=2.388;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,196:200:99:4549,516,0 chrVII 467473 . A G 4907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=227;Dels=0.00;FS=6.473;HaplotypeScore=11.6800;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.779;QD=21.62;ReadPosRankSum=2.320;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:2,225:227:99:4907,558,0 chrVII 469537 . G A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.0629;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.54;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3683,390,0 chrVII 471068 . G T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=15.1795;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3532,381,0 chrVII 471226 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.9668;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.76;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3391,375,0 chrVII 472620 . G T 4283.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4283,459,0 chrVII 473951 . G T 4976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=17.3418;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.182;QD=22.93;ReadPosRankSum=2.073;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:2,213:217:99:4976,532,0 chrVII 477384 . T C 4191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=181;Dels=0.00;FS=6.907;HaplotypeScore=9.8365;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.187;QD=23.15;ReadPosRankSum=2.287;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4191,474,0 chrVII 478318 . C G 5891.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.27;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,272:277:99:5891,657,0 chrVII 478785 . C T 2752 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.6006;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.37;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2785,300,0 chrVII 478940 . A G 3370.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.73;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3370,375,0 chrVII 479125 . C A 3058 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.80;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3091,345,0 chrVII 479241 . A G 2880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.228;QD=22.33;ReadPosRankSum=1.705;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2913,327,0 chrVII 479290 . C G 1904 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.0786;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=20.47;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1937,213,0 chrVII 479323 . A C 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=91;Dels=0.00;FS=2.504;HaplotypeScore=4.6437;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;MQRankSum=-0.495;QD=18.34;ReadPosRankSum=2.697;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:3,87:91:99:1702,186,0 chrVII 479326 . A T 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=93;Dels=0.00;FS=2.509;HaplotypeScore=6.7968;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;MQRankSum=-0.859;QD=17.44;ReadPosRankSum=2.881;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:3,90:93:99:1655,186,0 chrVII 479349 . A G 1546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=97;Dels=0.00;FS=2.595;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;MQRankSum=-0.469;QD=15.94;ReadPosRankSum=2.824;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:3,94:97:99:1579,177,0 chrVII 479356 . T C 1621 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.06;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1654,183,0 chrVII 479387 . T A 1469 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=17.08;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1502,162,0 chrVII 479702 . A G 1247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=74;Dels=0.01;FS=4.594;HaplotypeScore=5.4369;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-1.540;QD=16.85;ReadPosRankSum=1.588;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1280,147,0 chrVII 480192 . C T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=20.42;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3839,429,0 chrVII 480201 . G T 3924.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=20.87;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3924,420,0 chrVII 480357 . A T 2531 SnpCluster AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=32.74;MQ0=0;QD=15.34;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2564,282,0 chrVII 480363 . T G 1850 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.30;MQ0=0;QD=12.94;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:1883,213,0 chrVII 480365 . T C 1671 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=12.20;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1704,201,0 chrVII 480366 . A G 1675 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=12.23;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1708,201,0 chrVII 480369 . T C 1688 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;MQRankSum=0.106;QD=11.48;ReadPosRankSum=1.709;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:1721,195,0 chrVII 480374 . C T 1317 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=10.54;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1350,150,0 chrVII 480375 . T A 1347 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;MQRankSum=0.880;QD=10.69;ReadPosRankSum=1.705;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:1380,150,0 chrVII 480378 . G A 1364 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=9.74;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1397,153,0 chrVII 480381 . C T 1393 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=29.46;MQ0=0;QD=9.61;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:1426,162,0 chrVII 480384 . A G 1393 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=149;Dels=0.00;FS=3.573;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=30.07;MQ0=0;MQRankSum=-1.568;QD=9.35;ReadPosRankSum=1.709;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:1426,162,0 chrVII 480426 . G T 2201 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.79;MQ0=0;QD=14.11;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2234,243,0 chrVII 480492 . G A 2140 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;QD=14.56;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2173,231,0 chrVII 480495 . G A 1938 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.74;MQ0=0;QD=12.27;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:1971,219,0 chrVII 480501 . A G 1888 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=160;Dels=0.00;FS=7.092;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.25;MQ0=0;MQRankSum=-1.805;QD=11.80;ReadPosRankSum=2.373;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:1921,222,0 chrVII 480509 . C T 1592 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;QD=10.90;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1625,183,0 chrVII 480510 . A G 1600 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=3.383;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.50;MQ0=0;MQRankSum=1.305;QD=10.88;ReadPosRankSum=-1.091;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:1633,186,0 chrVII 480513 . G A 1673 SnpCluster AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=33.52;MQ0=0;QD=10.08;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:1706,195,0 chrVII 480612 . A G 4499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.5609;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=0.782;QD=24.19;ReadPosRankSum=1.676;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4499,498,0 chrVII 481104 . T C 5769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=263;Dels=0.00;FS=8.168;HaplotypeScore=18.7183;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=0.537;QD=21.94;ReadPosRankSum=2.431;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:2,261:263:99:5769,654,0 chrVII 481287 . G C 4724.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.7291;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.77;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4724,546,0 chrVII 481648 . G A 6428.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=13.6105;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.07;SB=-3.453e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:6428,685,0 chrVII 481905 . A C 5502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.151;QD=21.75;ReadPosRankSum=1.691;SB=-3.121e+03 GT:AD:DP:GQ:PL 1/1:1,251:253:99:5502,618,0 chrVII 482213 . T G 3491.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3491,393,0 chrVII 482311 . A T 2690 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=17.13;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2723,312,0 chrVII 482318 . C G 2601 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=16.16;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2634,300,0 chrVII 482421 . A G 5759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=253;Dels=0.00;FS=5.281;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.897;QD=22.76;ReadPosRankSum=1.650;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:5759,666,0 chrVII 482777 . G A 1698 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.96;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1731,186,0 chrVII 482943 . A T 1393 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.49;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1426,153,0 chrVII 482953 . C G 1075 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.20;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1108,126,0 chrVII 482980 . T C 1053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.108;QD=18.47;ReadPosRankSum=2.364;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1086,123,0 chrVII 484559 . A T 2493 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.97;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2526,270,0 chrVII 484663 . C T 3159 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.11;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3192,333,0 chrVII 484843 . C T 2557 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3753;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.90;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2590,285,0 chrVII 485256 . A G 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.093;QD=21.95;ReadPosRankSum=1.670;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2491,279,0 chrVII 485779 . G A 2346 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2379,264,0 chrVII 486003 . T C 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=87;Dels=0.00;FS=3.032;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.014;QD=21.59;ReadPosRankSum=2.337;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1911,216,0 chrVII 486499 . A G 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=15.0762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.648;QD=21.62;ReadPosRankSum=1.709;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3233,357,0 chrVII 487305 . C T 3689.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.80;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3689,396,0 chrVII 487329 . G A 3681.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.15;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3681,393,0 chrVII 487937 . G A 132.13 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=64.2055;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=1.42;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:18:165,18,0 chrVII 489593 . C T 2364 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.41;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2397,258,0 chrVII 489734 . T C 2821 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2854,318,0 chrVII 489944 . A G 4243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=186;Dels=0.00;FS=4.136;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.280;QD=22.81;ReadPosRankSum=1.713;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4243,474,0 chrVII 490539 . C G 3807.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.4141;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.26;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3807,423,0 chrVII 491698 . C A 3302.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3302,357,0 chrVII 493278 . G A 4122.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.6984;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.77;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4122,453,0 chrVII 493773 . T C 5679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.700;DP=261;Dels=0.00;FS=11.753;HaplotypeScore=17.4581;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.302;QD=21.76;ReadPosRankSum=3.760;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:5,256:261:99:5679,654,0 chrVII 495657 . A C 4728.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.8952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4728,534,0 chrVII 495756 . A G 3847.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.91;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:3847,441,0 chrVII 495828 . C T 3962.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.8934;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3962,426,0 chrVII 496008 . C T 4439.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.88;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4439,477,0 chrVII 496647 . C T 1704 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.67;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1737,183,0 chrVII 496711 . C G 706 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9377;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=15.35;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:87:739,87,0 chrVII 496909 . T C 231 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=12.83;SB=-1.492e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:30:264,30,0 chrVII 497019 . T G 421 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.05;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:48:454,48,0 chrVII 497123 . C G 1677 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.20;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1710,192,0 chrVII 497422 . T A 2119 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2152,234,0 chrVII 497772 . C T 3715.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.38;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3715,399,0 chrVII 497968 . A G 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=12.1582;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.117;QD=19.95;ReadPosRankSum=1.673;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2407,273,0 chrVII 498536 . C G 2931 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.0621;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.20;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:2964,330,0 chrVII 498665 . C T 2876 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2909,318,0 chrVII 498734 . C T 3483.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.53;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3483,378,0 chrVII 498951 . A G 3755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=3.565;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.247;QD=21.34;ReadPosRankSum=1.692;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3755,432,0 chrVII 499647 . T C 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=154;Dels=0.00;FS=3.458;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.257;QD=23.64;ReadPosRankSum=1.709;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3641,405,0 chrVII 499847 . A C 2558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.152;QD=20.46;ReadPosRankSum=1.704;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2591,300,0 chrVII 500228 . A G 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.194;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.589;QD=23.46;ReadPosRankSum=1.675;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2872,330,0 chrVII 500434 . A G 3595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=159;Dels=0.00;FS=3.508;HaplotypeScore=15.9765;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.320;QD=22.61;ReadPosRankSum=1.710;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3595,408,0 chrVII 501350 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.5662;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3458,369,0 chrVII 501606 . T C 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.2883;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.241;QD=23.39;ReadPosRankSum=1.669;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3883,432,0 chrVII 502202 . G T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3755,408,0 chrVII 502282 . G T 3910.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.84;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3910,429,0 chrVII 503755 . A C 3548.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.74;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3548,405,0 chrVII 504230 . G T 4699.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=17.5689;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.10;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4699,507,0 chrVII 504753 . T C 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=141;Dels=0.00;FS=2.590;HaplotypeScore=9.0497;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.167;QD=21.25;ReadPosRankSum=2.379;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3029,342,0 chrVII 504945 . C T 4327.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=15.8224;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.42;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4327,468,0 chrVII 506019 . C T 4174.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.9932;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.97;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4174,462,0 chrVII 506117 . G A 3465.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.7692;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.90;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3465,372,0 chrVII 506941 . G A 3848.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.8249;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.32;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3848,417,0 chrVII 507137 . A T 5101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=200;Dels=0.00;FS=11.084;HaplotypeScore=12.5518;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.342;QD=25.51;ReadPosRankSum=2.895;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:5101,544,0 chrVII 507287 . A T 5023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=219;Dels=0.00;FS=5.847;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.108;QD=22.94;ReadPosRankSum=2.939;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:3,216:219:99:5023,538,0 chrVII 508049 . C A 3589.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.92;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3589,390,0 chrVII 508084 . A G 3179 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.4549;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.04;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3212,366,0 chrVII 508161 . G A 4328.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=25.16;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4328,465,0 chrVII 508201 . T C 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.366;DP=169;Dels=0.00;FS=5.085;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=-0.047;QD=21.41;ReadPosRankSum=3.356;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:4,165:169:99:3618,405,0 chrVII 508206 . A G 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=168;Dels=0.00;FS=5.010;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=0.660;QD=20.31;ReadPosRankSum=1.629;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3412,396,0 chrVII 508419 . T C 3883.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=21.10;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3883,432,0 chrVII 508460 . G A 3215 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=20.74;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3248,354,0 chrVII 508462 . G A 3332.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=22.07;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3332,357,0 chrVII 508843 . G A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.9315;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=24.44;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3373,363,0 chrVII 509188 . G A 4169.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.10;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4169,456,0 chrVII 509895 . T G 3308.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.6231;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.12;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3308,378,0 chrVII 509912 . G A 2937 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=18.71;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:2970,315,0 chrVII 509926 . T A 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=165;Dels=0.00;FS=3.542;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=-0.577;QD=16.70;ReadPosRankSum=1.648;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2789,306,0 chrVII 509962 . C T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.33;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3477,369,0 chrVII 510345 . T G 3353.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.5497;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.05;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3353,393,0 chrVII 510416 . A G 4156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.1149;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.120;QD=19.15;ReadPosRankSum=1.684;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:1,214:217:99:4156,477,0 chrVII 510553 . A G 5226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=240;Dels=0.00;FS=4.081;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=1.106;QD=21.78;ReadPosRankSum=1.718;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:1,237:240:99:5226,582,0 chrVII 510577 . G A 5573.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=7.5442;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.12;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,249:252:99:5573,598,0 chrVII 510702 . C T 5135.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.45;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5135,550,0 chrVII 510742 . C T 4992.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.9030;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.80;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4992,537,0 chrVII 510755 . G A 5314.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=22.52;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5314,568,0 chrVII 510898 . G A 3370.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.77;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3370,366,0 chrVII 511290 . C T 4427.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.2157;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4427,483,0 chrVII 511330 . A G 4037.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.01;FS=0.000;HaplotypeScore=11.9957;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.94;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4037,471,0 chrVII 512075 . A G 5402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=235;Dels=0.00;FS=3.649;HaplotypeScore=10.2808;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.651;QD=22.99;ReadPosRankSum=1.688;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:5402,594,0 chrVII 512135 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.3104;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.67;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3786,429,0 chrVII 512594 . G A 4719.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4719,505,0 chrVII 512835 . C T 4184.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4184,459,0 chrVII 512884 . T C 3121 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.53;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,148:152:99:3154,354,0 chrVII 513070 . A T 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.919;DP=164;Dels=0.00;FS=7.324;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.796;QD=23.51;ReadPosRankSum=0.235;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3855,401,0 chrVII 514208 . A G 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=7.8032;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.088;QD=19.52;ReadPosRankSum=1.692;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3377,390,0 chrVII 514497 . A G 3351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=149;Dels=0.00;FS=8.033;HaplotypeScore=5.3168;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-0.291;QD=22.49;ReadPosRankSum=2.317;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3351,369,0 chrVII 514511 . C T 3322.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.71;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3322,366,0 chrVII 514934 . T C 4254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=184;Dels=0.00;FS=3.354;HaplotypeScore=9.6362;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.584;QD=23.12;ReadPosRankSum=1.694;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4254,477,0 chrVII 515594 . G A 3548.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.6786;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.04;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3548,384,0 chrVII 515649 . C T 3879.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.3197;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.17;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3879,420,0 chrVII 515741 . G A 5086.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5086,558,0 chrVII 515926 . C T 6450.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=18.3105;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.54;SB=-3.089e+03 GT:AD:DP:GQ:PL 1/1:0,271:274:99:6450,694,0 chrVII 516522 . A G 2764 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.18;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2797,321,0 chrVII 516644 . T C 2470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=11.2805;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.642;QD=21.29;ReadPosRankSum=1.672;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2503,285,0 chrVII 517302 . T C 6682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=310;Dels=0.00;FS=2.902;HaplotypeScore=16.8616;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=0.466;QD=21.55;ReadPosRankSum=2.410;SB=-3.284e+03 GT:AD:DP:GQ:PL 1/1:2,306:310:99:6682,750,0 chrVII 517444 . T C 5871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=273;Dels=0.00;FS=3.174;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.038;QD=21.51;ReadPosRankSum=1.681;SB=-3.287e+03 GT:AD:DP:GQ:PL 1/1:1,269:273:99:5871,654,0 chrVII 517587 . T C 4611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=257;Dels=0.02;FS=4.719;HaplotypeScore=28.4739;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;MQRankSum=-0.452;QD=17.94;ReadPosRankSum=1.690;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,249:251:99:4611,522,0 chrVII 517605 . C G 3794.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.03;FS=0.000;HaplotypeScore=14.0415;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=16.14;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,221:227:99:3794,429,0 chrVII 517615 . A G 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=215;Dels=0.00;FS=2.671;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;MQRankSum=-0.782;QD=16.81;ReadPosRankSum=2.392;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:2,210:215:99:3615,405,0 chrVII 517670 . T A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.5646;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=17.33;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3379,360,0 chrVII 517674 . A G 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=192;Dels=0.01;FS=2.902;HaplotypeScore=4.6212;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=-0.721;QD=16.60;ReadPosRankSum=2.424;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:3220,363,0 chrVII 517686 . G A 3872.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.2007;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=19.56;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3872,417,0 chrVII 517761 . A G 4829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=208;Dels=0.00;FS=8.625;HaplotypeScore=16.2057;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.599;QD=23.22;ReadPosRankSum=2.426;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:2,205:208:99:4829,543,0 chrVII 517812 . C T 3531.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=21.40;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3531,384,0 chrVII 517815 . T C 3096 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=19.23;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3129,360,0 chrVII 517876 . A G 2325 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=15.20;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2358,264,0 chrVII 517879 . A G 2394 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=16.51;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2427,279,0 chrVII 517909 . T C 3833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=3.968;HaplotypeScore=10.6416;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=-1.732;QD=19.96;ReadPosRankSum=1.714;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:3833,429,0 chrVII 518049 . G A 5547.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=24.87;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5547,592,0 chrVII 518080 . G A 4364.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=18.11;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,238:241:99:4364,486,0 chrVII 518083 . A G 4105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=238;Dels=0.00;FS=10.122;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=1.322;QD=17.25;ReadPosRankSum=2.428;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:2,231:238:99:4105,450,0 chrVII 518259 . T C 6623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=20.7489;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-1.460;QD=21.50;ReadPosRankSum=1.687;SB=-3.772e+03 GT:AD:DP:GQ:PL 1/1:1,305:308:99:6623,759,0 chrVII 518306 . A G 6933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.721;DP=326;Dels=0.00;FS=16.292;HaplotypeScore=16.7873;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-0.516;QD=21.27;ReadPosRankSum=4.737;SB=-3.439e+03 GT:AD:DP:GQ:PL 1/1:8,316:326:99:6933,777,0 chrVII 518449 . A T 5400.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=11.9906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5400,574,0 chrVII 518537 . C T 5081.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=19.0235;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-2.936e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5081,544,0 chrVII 519077 . C T 2664 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=21.48;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2697,294,0 chrVII 519105 . A G 1644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0995;MLEAC=2;MLEAF=1.00;MQ=42.54;MQ0=0;MQRankSum=-1.629;QD=17.68;ReadPosRankSum=2.370;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1677,195,0 chrVII 519132 . T C 796.64 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.622;DP=67;Dels=0.00;FS=15.250;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=32.14;MQ0=0;MQRankSum=1.251;QD=11.89;ReadPosRankSum=1.529;SB=2.36 GT:AD:DP:GQ:PL 1/1:12,55:67:11:829,11,0 chrVII 519144 . T C 651.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.156;DP=64;Dels=0.00;FS=36.961;HaplotypeScore=7.5502;MLEAC=1;MLEAF=0.500;MQ=30.34;MQ0=0;MQRankSum=2.903;QD=10.17;ReadPosRankSum=1.688;SB=-6.863e-03 GT:AD:DP:GQ:PL 0/1:17,45:64:38:681,0,38 chrVII 519153 . A T 695.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.283;DP=60;Dels=0.00;FS=40.841;HaplotypeScore=7.8677;MLEAC=1;MLEAF=0.500;MQ=27.46;MQ0=0;MQRankSum=2.444;QD=11.58;ReadPosRankSum=-1.508;SB=-7.384e-03 GT:AD:DP:GQ:PL 0/1:18,42:60:34:725,0,34 chrVII 519159 . T G 475.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.247;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=11.2327;MLEAC=1;MLEAF=0.500;MQ=27.18;MQ0=0;MQRankSum=0.616;QD=9.31;ReadPosRankSum=-4.225;SB=-6.533e-03 GT:AD:DP:GQ:PL 0/1:13,38:51:52:505,0,52 chrVII 519160 . T C 418.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.696;DP=51;Dels=0.00;FS=35.609;HaplotypeScore=11.2327;MLEAC=1;MLEAF=0.500;MQ=27.18;MQ0=0;MQRankSum=1.606;QD=8.20;ReadPosRankSum=-3.006;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:18,33:51:69:448,0,69 chrVII 519164 . A C 424.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.482;DP=51;Dels=0.00;FS=28.318;HaplotypeScore=11.2327;MLEAC=1;MLEAF=0.500;MQ=27.18;MQ0=0;MQRankSum=3.338;QD=8.31;ReadPosRankSum=-2.349;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:22,29:51:64:454,0,64 chrVII 519170 . C G 372.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.609;DP=47;Dels=0.00;FS=32.958;HaplotypeScore=4.4656;MLEAC=1;MLEAF=0.500;MQ=27.02;MQ0=0;MQRankSum=2.221;QD=7.92;ReadPosRankSum=-4.629;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:18,29:47:63:402,0,63 chrVII 519177 . T A 304.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;DP=41;Dels=0.00;FS=28.491;HaplotypeScore=7.3508;MLEAC=1;MLEAF=0.500;MQ=26.72;MQ0=0;MQRankSum=0.696;QD=7.41;ReadPosRankSum=-4.584;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,23:41:90:334,0,90 chrVII 519183 . T C 336 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.293;DP=36;Dels=0.00;FS=47.982;HaplotypeScore=7.3508;MLEAC=2;MLEAF=1.00;MQ=26.77;MQ0=0;MQRankSum=2.196;QD=9.33;ReadPosRankSum=-2.470;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:5,31:36:45:369,45,0 chrVII 519195 . T C 99.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.722;DP=22;Dels=0.00;FS=55.474;HaplotypeScore=5.3645;MLEAC=2;MLEAF=1.00;MQ=21.18;MQ0=0;MQRankSum=3.283;QD=4.51;ReadPosRankSum=0.854;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:11,11:22:15:132,15,0 chrVII 519204 . A T 26.77 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.159;DP=18;Dels=0.00;FS=34.857;HaplotypeScore=6.9419;MLEAC=2;MLEAF=1.00;MQ=16.87;MQ0=0;MQRankSum=2.920;QD=1.49;ReadPosRankSum=-1.221;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:14,4:18:6:58,6,0 chrVII 519230 . C T 84.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.037;DP=24;Dels=0.00;FS=10.792;HaplotypeScore=4.4397;MLEAC=2;MLEAF=1.00;MQ=20.33;MQ0=0;MQRankSum=0.157;QD=3.52;ReadPosRankSum=2.246;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:2,22:24:12:117,12,0 chrVII 519231 . A G 76.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=23;Dels=0.00;FS=13.617;HaplotypeScore=3.5456;MLEAC=2;MLEAF=1.00;MQ=20.64;MQ0=0;MQRankSum=-0.829;QD=3.33;ReadPosRankSum=1.583;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:1,22:23:12:109,12,0 chrVII 519297 . T C 225 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.47;MQ0=0;QD=5.63;SB=-5.102e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:30:258,30,0 chrVII 519306 . G T 155.06 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=5.17;SB=-6.207e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:21:188,21,0 chrVII 519307 . T C 150.06 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=5.00;SB=-5.207e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:21:183,21,0 chrVII 519309 . A G 151.06 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=5.04;SB=-5.307e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:21:184,21,0 chrVII 519312 . A G 146.06 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=4.87;SB=-5.007e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:21:179,21,0 chrVII 519323 . G C 155.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583;DP=52;Dels=0.00;FS=20.589;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=31.80;MQ0=0;MQRankSum=-2.297;QD=2.98;ReadPosRankSum=-2.004;SB=-2.490e+02 GT:AD:DP:GQ:PL 0/1:26,26:52:99:185,0,109 chrVII 519327 . C A 329 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.412;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;MQRankSum=0.513;QD=6.09;ReadPosRankSum=-0.513;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:39:362,39,0 chrVII 519330 . A T 344.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.890;DP=59;Dels=0.00;FS=9.563;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;MQRankSum=0.759;QD=5.83;ReadPosRankSum=-0.878;SB=-4.051e+02 GT:AD:DP:GQ:PL 1/1:16,43:59:1:373,1,0 chrVII 519381 . G A 2971 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=19.04;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3004,324,0 chrVII 520761 . A T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.40;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3328,366,0 chrVII 520865 . A G 2565 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0725;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.55;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2598,294,0 chrVII 521004 . T C 3086 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.0791;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.91;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3119,357,0 chrVII 521128 . G A 2389 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7220;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.33;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2422,258,0 chrVII 521292 . C T 2491 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.95;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2524,267,0 chrVII 521696 . G A 2480 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2513,282,0 chrVII 521759 . C G 2475 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.29;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2508,285,0 chrVII 522036 . A C 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=6.310;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=0.615;QD=21.87;ReadPosRankSum=2.414;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3051,339,0 chrVII 522062 . C T 2663 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=21.65;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2696,288,0 chrVII 522067 . G C 2441 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.0977;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.37;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2474,276,0 chrVII 522131 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.25;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3103,330,0 chrVII 522237 . T G 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=157;Dels=0.00;FS=2.694;HaplotypeScore=13.2322;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.886;QD=20.41;ReadPosRankSum=2.386;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:2,152:157:99:3238,375,0 chrVII 522692 . C T 2067 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.76;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2100,231,0 chrVII 522892 . C T 2262 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3902;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.18;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2295,243,0 chrVII 522948 . T G 2639 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.15;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2672,297,0 chrVII 522987 . T G 2099 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=20.18;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2132,240,0 chrVII 522988 . T C 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=-1.732;QD=19.93;ReadPosRankSum=1.699;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2126,234,0 chrVII 523005 . T C 1802 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=17.84;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1835,207,0 chrVII 523077 . G A 2533 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=23.45;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2566,270,0 chrVII 523089 . A T 2355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=107;Dels=0.00;FS=7.387;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.334;QD=22.01;ReadPosRankSum=2.335;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2388,258,0 chrVII 523104 . C G 2354 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.95;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2387,270,0 chrVII 523190 . G T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=24.50;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3920,417,0 chrVII 523348 . C T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.3762;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=22.56;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3271,354,0 chrVII 523370 . G C 2774 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;QD=18.49;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2807,309,0 chrVII 523385 . C T 2849 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;QD=18.38;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2882,309,0 chrVII 523412 . A G 2247 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;MQRankSum=-0.968;QD=15.50;ReadPosRankSum=1.684;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2280,255,0 chrVII 523415 . G T 2131 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=16.78;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2164,231,0 chrVII 523417 . C T 2201 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;QD=16.55;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2234,243,0 chrVII 523617 . T G 3172 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=22.66;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3205,357,0 chrVII 523732 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=161;Dels=0.00;FS=6.551;HaplotypeScore=125.7436;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-1.198;QD=20.42;ReadPosRankSum=1.503;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3287,369,0 chrVII 523764 . C T 2658 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;QD=16.31;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2691,291,0 chrVII 523776 . A G 2624 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=16.20;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:2657,297,0 chrVII 524204 . A G 4359.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.69;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4359,480,0 chrVII 524713 . T C 2797 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.29;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2830,330,0 chrVII 524803 . T C 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.8634;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.306;QD=20.77;ReadPosRankSum=1.499;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2525,288,0 chrVII 525947 . A G 5062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=230;Dels=0.00;FS=3.283;HaplotypeScore=16.3944;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.145;QD=22.01;ReadPosRankSum=1.702;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5062,588,0 chrVII 526684 . T C 3024 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=120.4274;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.45;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3057,339,0 chrVII 526833 . T A 1220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.824;DP=96;Dels=0.00;FS=11.827;HaplotypeScore=29.5834;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=-0.033;QD=12.71;ReadPosRankSum=3.644;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:5,91:96:99:1253,144,0 chrVII 527159 . A G 4846.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.13;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4846,546,0 chrVII 527390 . T G 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=3.598;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;MQRankSum=-0.066;QD=20.23;ReadPosRankSum=1.710;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3229,369,0 chrVII 527396 . T C 3134 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.8273;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=20.62;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3167,354,0 chrVII 527439 . C G 1539 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=12.4099;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=13.50;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:1572,177,0 chrVII 527481 . C T 140.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.356;DP=153;Dels=0.00;FS=195.143;HaplotypeScore=11.6484;MLEAC=1;MLEAF=0.500;MQ=53.66;MQ0=0;MQRankSum=-0.390;QD=0.92;ReadPosRankSum=-1.122;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,44:153:99:170,0,559 chrVII 527620 . A G 2286 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=139.8762;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=15.45;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2319,290,0 chrVII 527673 . C T 3629.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.0878;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=19.41;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3629,393,0 chrVII 527834 . C T 4998.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.1586;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.14;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4998,546,0 chrVII 528099 . T A 6380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=261;Dels=0.00;FS=2.704;HaplotypeScore=17.0859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.118;QD=24.44;ReadPosRankSum=2.383;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:2,259:261:99:6380,691,0 chrVII 528200 . A C 7252.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=12.1479;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.39;SB=-3.494e+03 GT:AD:DP:GQ:PL 1/1:0,309:310:99:7252,813,0 chrVII 528447 . A C 5432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-1.113;QD=21.56;ReadPosRankSum=1.705;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:1,251:252:99:5432,630,0 chrVII 528489 . C T 5445.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=11.9214;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.44;SB=-3.024e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5445,586,0 chrVII 528501 . T C 4785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=240;Dels=0.00;FS=3.531;HaplotypeScore=10.5858;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.949;QD=19.94;ReadPosRankSum=1.718;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:1,238:240:99:4785,540,0 chrVII 528787 . G A 4202.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.2141;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.89;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4202,465,0 chrVII 528828 . C T 4937.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.56;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4937,549,0 chrVII 528948 . T C 2606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.184;DP=154;Dels=0.01;FS=3.001;HaplotypeScore=28.0630;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.307;QD=16.92;ReadPosRankSum=-1.420;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:2,147:152:99:2639,303,0 chrVII 529158 . T C 3309.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.36;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3309,372,0 chrVII 529230 . T C 4692.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.5023;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.56;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4692,531,0 chrVII 529285 . A G 5000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=243;Dels=0.00;FS=4.735;HaplotypeScore=14.4289;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.157;QD=20.58;ReadPosRankSum=1.588;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,240:243:99:5000,576,0 chrVII 529347 . A T 5789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=254;Dels=0.00;FS=5.246;HaplotypeScore=14.4884;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-0.559;QD=22.79;ReadPosRankSum=1.649;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:1,253:254:99:5789,628,0 chrVII 529378 . G A 5445.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=20.94;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5445,577,0 chrVII 529383 . A G 4782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=263;Dels=0.00;FS=5.012;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;MQRankSum=-1.346;QD=18.18;ReadPosRankSum=1.692;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:1,259:263:99:4782,555,0 chrVII 529563 . C T 12660.01 filter AC=2;AF=1.00;AN=2;DP=558;Dels=0.00;FS=0.000;HaplotypeScore=23.6945;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.69;SB=-4.295e+03 GT:AD:DP:GQ:PL 1/1:0,558:558:99:12660,1366,0 chrVII 529630 . A G 7829.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.402;DP=493;Dels=0.00;FS=14.172;HaplotypeScore=7.2798;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=-0.462;QD=15.88;ReadPosRankSum=3.416;SB=-5.559e+03 GT:AD:DP:GQ:PL 1/1:4,487:493:99:7829,894,0 chrVII 529644 . A T 7601.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.439;DP=471;Dels=0.00;FS=6.823;HaplotypeScore=13.7370;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=1.023;QD=16.14;ReadPosRankSum=2.439;SB=-5.792e+03 GT:AD:DP:GQ:PL 1/1:2,469:471:99:7601,829,0 chrVII 530016 . A C 1670.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-12.204;DP=868;Dels=0.00;FS=89.551;HaplotypeScore=407.8755;MLEAC=1;MLEAF=0.500;MQ=32.58;MQ0=0;MQRankSum=0.566;QD=1.92;ReadPosRankSum=2.320;SB=-2.479e+03 GT:AD:DP:GQ:PL 0/1:363,505:868:99:1700,0,727 chrVII 530034 . A C 2898.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-12.539;DP=967;Dels=0.01;FS=151.002;HaplotypeScore=64.8337;MLEAC=1;MLEAF=0.500;MQ=34.84;MQ0=0;MQRankSum=3.081;QD=3.00;ReadPosRankSum=9.270;SB=-2.329e+03 GT:AD:DP:GQ:PL 0/1:356,603:960:99:2928,0,550 chrVII 530040 . A C 3524.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.335;DP=1000;DS;Dels=0.01;FS=124.954;HaplotypeScore=145.1563;MLEAC=1;MLEAF=0.500;MQ=35.60;MQ0=0;MQRankSum=2.814;QD=3.52;ReadPosRankSum=10.021;SB=-2.673e+03 GT:AD:DP:GQ:PL 0/1:345,647:993:99:3524,0,462 chrVII 530046 . A C 408.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.847;DP=973;DS;Dels=0.00;FS=99.301;HaplotypeScore=210.4186;MLEAC=1;MLEAF=0.500;MQ=36.12;MQ0=0;MQRankSum=-5.165;QD=0.42;ReadPosRankSum=-12.991;SB=-3.235e+03 GT:AD:DP:GQ:PL 0/1:593,377:973:99:438,0,4073 chrVII 530071 . A T 88.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;DP=754;DS;Dels=0.00;FS=33.257;HaplotypeScore=168.1991;MLEAC=1;MLEAF=0.500;MQ=41.00;MQ0=0;MQRankSum=-5.773;QD=0.12;ReadPosRankSum=-5.943;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:653,90:754:99:118,0,6077 chrVII 530308 . A G 4635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=226;Dels=0.00;FS=2.571;HaplotypeScore=19.0231;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=2.353;QD=20.51;ReadPosRankSum=2.969;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:3,222:226:99:4635,513,0 chrVII 530472 . A T 3718.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.67;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3718,399,0 chrVII 530543 . G A 3590.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.9815;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.93;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3590,384,0 chrVII 530805 . A T 3922.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.11;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3922,423,0 chrVII 530837 . G C 4410.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=17.78;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:4410,495,0 chrVII 530852 . G A 5159.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.47;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:5159,544,0 chrVII 531261 . G T 2071 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=25.57;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2104,225,0 chrVII 531322 . G A 2203 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.87;MQ0=0;QD=25.32;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2236,231,0 chrVII 531684 . A T 1204 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.155;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;MQRankSum=-1.824;QD=17.97;ReadPosRankSum=2.303;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1237,132,0 chrVII 531741 . A C 1032 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.44;MQ0=0;QD=19.11;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1065,120,0 chrVII 531976 . T C 1489 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1522,168,0 chrVII 531991 . G A 1415 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1448,162,0 chrVII 532330 . T C 4884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.662;QD=24.42;ReadPosRankSum=1.662;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4884,546,0 chrVII 532400 . T C 4366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.261;QD=23.73;ReadPosRankSum=1.657;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4366,486,0 chrVII 532483 . C T 4142.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.76;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,177:182:99:4142,444,0 chrVII 532710 . T C 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=123;Dels=0.00;FS=6.349;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.554;QD=21.41;ReadPosRankSum=2.409;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:2666,297,0 chrVII 532850 . A C 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.486;QD=23.07;ReadPosRankSum=1.702;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2686,297,0 chrVII 534011 . T C 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.291;DP=136;Dels=0.00;FS=17.369;HaplotypeScore=9.8154;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-2.003;QD=17.00;ReadPosRankSum=2.673;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:4,132:136:99:2345,267,0 chrVII 534396 . C T 3514.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.24;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3514,375,0 chrVII 534685 . T C 3574.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.1137;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.48;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3574,399,0 chrVII 534914 . A G 2434 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.13;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2467,285,0 chrVII 535212 . G T 587 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.98;MQ0=17;QD=13.34;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:15,29:44:69:620,69,0 chrVII 535539 . T C 101.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=14;Dels=0.00;FS=4.771;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.53;MQ0=5;MQRankSum=-0.736;QD=7.23;ReadPosRankSum=0.736;SB=-2.376e+01 GT:AD:DP:GQ:PL 1/1:2,7:14:15:134,15,0 chrVII 536003 . C T 48.97 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.97;MQ0=16;QD=2.45;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:15,5:20:9:81,9,0 chrVII 541684 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.81;MQ0=1;QD=5.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,3:4:6:52,6,0 chrVII 541685 . A T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.81;MQ0=1;QD=5.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,3:4:6:52,6,0 chrVII 542670 . A C 3900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.969;QD=22.03;ReadPosRankSum=1.693;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3900,438,0 chrVII 542675 . G A 3896.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.95;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3896,411,0 chrVII 545156 . A C 2399 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.63;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2432,270,0 chrVII 545169 . T A 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=113;Dels=0.00;FS=6.295;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.294;QD=23.29;ReadPosRankSum=2.363;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2665,285,0 chrVII 545347 . T A 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.141;QD=24.92;ReadPosRankSum=1.655;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3389,360,0 chrVII 545844 . T C 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=3.233;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.144;QD=22.77;ReadPosRankSum=1.703;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2766,309,0 chrVII 546392 . G A 4347.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.57;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4347,465,0 chrVII 547230 . G A 8864.01 filter AC=2;AF=1.00;AN=2;DP=388;Dels=0.00;FS=0.000;HaplotypeScore=16.1766;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.85;SB=-4.863e+03 GT:AD:DP:GQ:PL 1/1:0,387:388:99:8864,987,0 chrVII 547669 . T G 7179.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=17.2759;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.43;SB=-2.783e+03 GT:AD:DP:GQ:PL 1/1:0,318:320:99:7179,789,0 chrVII 547845 . A G 3099 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.82;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3132,354,0 chrVII 547962 . T A 2523 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.58;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2556,282,0 chrVII 548025 . C T 2804 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2451;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.17;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2837,312,0 chrVII 548106 . A G 1759 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.14;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1792,201,0 chrVII 548209 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=164;Dels=0.00;FS=3.371;HaplotypeScore=11.8352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.435;QD=22.69;ReadPosRankSum=1.711;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3721,423,0 chrVII 549114 . G A 3511.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3511,378,0 chrVII 549148 . T C 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=158;Dels=0.00;FS=2.848;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.399;QD=23.47;ReadPosRankSum=2.418;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3709,420,0 chrVII 549493 . T C 3015 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.33;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3048,351,0 chrVII 549656 . T C 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=174;Dels=0.00;FS=2.998;HaplotypeScore=14.1270;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.487;QD=24.27;ReadPosRankSum=2.421;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:4223,474,0 chrVII 551439 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.91;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3611,399,0 chrVII 553967 . A G 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=148;Dels=0.00;FS=2.679;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-2.015;QD=19.89;ReadPosRankSum=2.416;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:2976,333,0 chrVII 554033 . C A 2634 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.51;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2667,294,0 chrVII 554853 . T C 4646.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4646,516,0 chrVII 555036 . T C 2927 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.52;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,126:130:99:2960,333,0 chrVII 555174 . C G 1693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=91;Dels=0.00;FS=5.245;HaplotypeScore=4.1559;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=0.657;QD=18.60;ReadPosRankSum=1.692;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,86:91:99:1726,198,0 chrVII 555620 . G A 2322 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2355,252,0 chrVII 556096 . A G 2678 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.80;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2711,300,0 chrVII 556169 . G A 1868 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=19.66;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1901,204,0 chrVII 556175 . A G 1858 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=17.87;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1891,213,0 chrVII 556181 . T G 1938 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=17.78;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1971,225,0 chrVII 556822 . C G 2520 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.12;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2553,288,0 chrVII 556902 . C T 1599 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.90;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1632,177,0 chrVII 557021 . A T 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=119;Dels=0.00;FS=6.131;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.687;QD=24.65;ReadPosRankSum=2.873;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2966,318,0 chrVII 558216 . T G 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=150;Dels=0.00;FS=2.819;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.090;QD=21.97;ReadPosRankSum=2.335;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3295,381,0 chrVII 559321 . C T 3351.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3351,351,0 chrVII 561585 . A C 2521 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=22.31;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2554,297,0 chrVII 561661 . A T 2489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=3.365;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;MQRankSum=-1.664;QD=24.17;ReadPosRankSum=1.664;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2522,267,0 chrVII 561745 . A C 1509 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=20.96;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1542,171,0 chrVII 567443 . G T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.51;MQ0=1;MQRankSum=0.736;QD=6.44;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,2:4:6:57,6,0 chrVII 574415 . A G 180.54 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.454;DP=181;Dels=0.00;FS=2.172;HaplotypeScore=5.4630;MLEAC=2;MLEAF=1.00;MQ=9.08;MQ0=160;MQRankSum=1.940;QD=1.00;ReadPosRankSum=-0.041;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:8,173:181:2:210,2,0 chrVII 574607 . T C 126.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=21.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:159,18,0 chrVII 574729 . A C 467 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;QD=9.34;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:57:500,57,0 chrVII 575122 . A G 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=3.163;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.583;QD=23.32;ReadPosRankSum=1.672;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2761,306,0 chrVII 575328 . T A 2984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.231;QD=24.87;ReadPosRankSum=1.674;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3017,321,0 chrVII 575439 . A G 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=152;Dels=0.00;FS=10.260;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.269;QD=24.26;ReadPosRankSum=2.417;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3687,408,0 chrVII 575640 . A G 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=159;Dels=0.00;FS=2.861;HaplotypeScore=9.5782;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.532;QD=22.25;ReadPosRankSum=2.418;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3537,408,0 chrVII 575955 . C T 4203.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.29;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4203,453,0 chrVII 576078 . A G 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=168;Dels=0.00;FS=2.692;HaplotypeScore=8.3589;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.499;QD=21.10;ReadPosRankSum=2.420;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3545,408,0 chrVII 576318 . T C 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=164;Dels=0.00;FS=2.646;HaplotypeScore=16.7973;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.367;QD=22.49;ReadPosRankSum=2.390;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3689,417,0 chrVII 576519 . T C 4897.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.8641;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4897,546,0 chrVII 576686 . C T 3809.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.24;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:3809,417,0 chrVII 576820 . C G 4704.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.00;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,218:224:99:4704,525,0 chrVII 577533 . A C 4554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.009;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.0158;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.078;QD=22.54;ReadPosRankSum=0.879;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,198:202:99:4554,498,0 chrVII 577801 . A G 3873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=179;Dels=0.00;FS=5.492;HaplotypeScore=11.2349;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-0.903;QD=21.64;ReadPosRankSum=2.960;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:3,174:179:99:3873,447,0 chrVII 577881 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=15.8203;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.42;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3721,420,0 chrVII 578083 . T A 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=131;Dels=0.00;FS=3.538;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.335;QD=22.49;ReadPosRankSum=1.679;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2979,321,0 chrVII 578218 . T A 2577 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.64;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2610,279,0 chrVII 578265 . G A 2722 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9311;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.30;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2755,294,0 chrVII 578356 . G A 2610 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.70;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2643,285,0 chrVII 578379 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.54;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2618,279,0 chrVII 578422 . A G 2532 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.42;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2565,297,0 chrVII 578448 . G A 2940 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.15;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2973,321,0 chrVII 578512 . C T 2900 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.86;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2933,321,0 chrVII 578520 . C A 2865 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.22;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2898,309,0 chrVII 578702 . A G 3203 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.2926;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.72;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3236,363,0 chrVII 578731 . T C 2969 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.2701;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.67;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3002,336,0 chrVII 578794 . A G 3755.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.6353;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.62;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3755,420,0 chrVII 578860 . T C 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=157;Dels=0.00;FS=5.671;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.417;QD=21.57;ReadPosRankSum=2.917;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3386,381,0 chrVII 578924 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=24.14;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3911,435,0 chrVII 579120 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=148;Dels=0.00;FS=8.183;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.805;QD=23.35;ReadPosRankSum=2.416;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3456,390,0 chrVII 579186 . A G 2595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.178;QD=18.80;ReadPosRankSum=1.681;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:2628,303,0 chrVII 579190 . A C 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.611;QD=19.00;ReadPosRankSum=1.707;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2693,294,0 chrVII 579227 . G A 2948 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=13.3633;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.19;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2981,318,0 chrVII 579280 . G A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=15.7172;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.41;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4077,441,0 chrVII 579473 . A G 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=160;Dels=0.00;FS=2.874;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=0.456;QD=18.33;ReadPosRankSum=2.388;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:2966,333,0 chrVII 579474 . G C 3036 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=18.97;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3069,342,0 chrVII 579508 . A G 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.6104;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-1.183;QD=19.81;ReadPosRankSum=1.698;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4002,450,0 chrVII 579634 . A G 3827.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.5567;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=23.05;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3827,420,0 chrVII 579733 . T C 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.571;DP=159;Dels=0.00;FS=5.487;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=-0.327;QD=19.14;ReadPosRankSum=2.955;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:3,154:159:99:3076,342,0 chrVII 579775 . T C 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=168;Dels=0.00;FS=2.794;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;MQRankSum=1.367;QD=16.22;ReadPosRankSum=2.420;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:2758,312,0 chrVII 579785 . T A 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=43.74;MQ0=0;MQRankSum=-0.498;QD=16.09;ReadPosRankSum=1.672;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:2833,303,0 chrVII 579795 . A G 2445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=3.941;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=42.08;MQ0=0;MQRankSum=-0.942;QD=14.30;ReadPosRankSum=1.692;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:2478,276,0 chrVII 579802 . G T 2296 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;QD=14.00;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2329,252,0 chrVII 579827 . T C 2392 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=14.32;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2425,273,0 chrVII 579860 . A T 3438.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.7742;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=20.96;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3438,366,0 chrVII 579915 . C T 5292.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=24.39;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5292,573,0 chrVII 580060 . G A 5718.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.2842;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=24.97;SB=-2.985e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5718,616,0 chrVII 580178 . G T 2718 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=19.41;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2751,291,0 chrVII 580283 . G A 2024 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.65;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2057,222,0 chrVII 580388 . G A 627 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=19.59;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:72:660,72,0 chrVII 580425 . C G 952 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.14;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:985,108,0 chrVII 580726 . A G 3378.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=18.1172;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.23;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3378,384,0 chrVII 580852 . A G 4480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=199;Dels=0.00;FS=3.307;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.416;QD=22.51;ReadPosRankSum=1.679;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:1,196:199:99:4480,504,0 chrVII 581134 . G C 3032 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.81;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3065,348,0 chrVII 581206 . A G 3119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.1028;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-1.060;QD=18.90;ReadPosRankSum=1.711;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3152,360,0 chrVII 581386 . T G 2339 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.82;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2372,264,0 chrVII 581392 . A G 2183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.260;QD=18.04;ReadPosRankSum=1.559;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2216,249,0 chrVII 581718 . G A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.72;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3294,351,0 chrVII 581814 . A G 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=149;Dels=0.00;FS=2.829;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.503;QD=21.34;ReadPosRankSum=2.417;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3212,363,0 chrVII 581949 . A G 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.531;QD=20.65;ReadPosRankSum=2.346;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1995,228,0 chrVII 582077 . A G 1480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=64;Dels=0.00;FS=9.685;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.059;QD=23.12;ReadPosRankSum=2.372;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:2,61:64:99:1513,168,0 chrVII 582233 . T C 2206 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.72;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2239,252,0 chrVII 582267 . A C 2797 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.66;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2830,315,0 chrVII 582540 . A C 54.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.155;DP=88;Dels=0.00;FS=1.057;HaplotypeScore=72.3964;MLEAC=1;MLEAF=0.500;MQ=53.60;MQ0=0;MQRankSum=2.807;QD=0.61;ReadPosRankSum=-5.761;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:72,16:88:84:84,0,1115 chrVII 582559 . T A 1088 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=14.90;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1121,123,0 chrVII 582566 . T A 1355 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=18.31;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1388,147,0 chrVII 582800 . C T 2363 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.02;FS=0.000;HaplotypeScore=105.4301;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.55;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2396,264,0 chrVII 583389 . A T 4997.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=18.1852;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.51;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4997,555,0 chrVII 583953 . G A 4442.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.54;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4442,466,0 chrVII 584220 . C T 2494 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.53;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2527,270,0 chrVII 584298 . T C 2976 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.88;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3009,336,0 chrVII 584388 . G C 2728 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.31;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2761,309,0 chrVII 584635 . A T 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.363;DP=166;Dels=0.01;FS=13.211;HaplotypeScore=1.9559;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-0.863;QD=18.22;ReadPosRankSum=3.288;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:4,161:165:99:3058,348,0 chrVII 584636 . T A 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.233;HaplotypeScore=6.3683;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.390;QD=18.75;ReadPosRankSum=1.645;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3070,348,0 chrVII 584683 . C G 2591 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.51;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2624,297,0 chrVII 584900 . A G 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=128;Dels=0.00;FS=13.813;HaplotypeScore=6.7155;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=1.433;QD=21.53;ReadPosRankSum=2.882;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:3,125:128:99:2789,315,0 chrVII 584916 . G A 2678 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.13;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2711,306,0 chrVII 585062 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.02;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3844,423,0 chrVII 585274 . T C 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.099;HaplotypeScore=5.6173;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.477;QD=23.18;ReadPosRankSum=1.709;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3477,390,0 chrVII 585680 . A G 2602 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2635,291,0 chrVII 585971 . T C 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=115;Dels=0.00;FS=2.953;HaplotypeScore=11.3869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.374;QD=22.22;ReadPosRankSum=2.364;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2588,291,0 chrVII 586087 . A G 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=3.418;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.318;QD=23.12;ReadPosRankSum=0.801;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:3178,366,0 chrVII 586267 . G A 2433 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.39;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2466,264,0 chrVII 586443 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.39;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,122:124:99:3181,336,0 chrVII 586992 . A G 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=106;Dels=0.00;FS=2.975;HaplotypeScore=4.6407;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.128;QD=20.99;ReadPosRankSum=2.380;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2258,255,0 chrVII 587013 . G A 2333 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.65;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2366,249,0 chrVII 587292 . T C 2907 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7609;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.36;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2940,330,0 chrVII 587364 . C T 2412 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.77;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2445,264,0 chrVII 587567 . T C 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=133;Dels=0.00;FS=5.477;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.015;QD=20.71;ReadPosRankSum=2.825;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:3,129:133:99:2788,315,0 chrVII 588024 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.59;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3056,330,0 chrVII 588195 . T C 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=155;Dels=0.00;FS=3.032;HaplotypeScore=10.8747;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.315;QD=22.40;ReadPosRankSum=2.417;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:2,150:155:99:3472,384,0 chrVII 588402 . G A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.23;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3257,357,0 chrVII 588489 . T C 3650.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.40;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3650,408,0 chrVII 588807 . C T 4460.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.5097;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.24;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4460,477,0 chrVII 588888 . G T 3957.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3957,435,0 chrVII 589020 . T C 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.169;HaplotypeScore=8.8315;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.159;QD=20.91;ReadPosRankSum=1.707;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2939,333,0 chrVII 589047 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.80;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3336,354,0 chrVII 589089 . C T 3041 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.57;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3074,336,0 chrVII 589637 . A G 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.351;QD=20.40;ReadPosRankSum=1.708;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2950,333,0 chrVII 589799 . A G 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.814;QD=22.78;ReadPosRankSum=1.709;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3463,396,0 chrVII 589840 . T C 3765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.329;DP=162;Dels=0.00;FS=5.241;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-2.178;QD=23.24;ReadPosRankSum=3.394;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:4,157:162:99:3765,420,0 chrVII 590065 . A G 4439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=20.5324;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.336;QD=21.87;ReadPosRankSum=1.680;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4439,513,0 chrVII 590527 . C G 3033 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.2142;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:3066,336,0 chrVII 590641 . G A 3126 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.9363;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.49;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3159,342,0 chrVII 590923 . T G 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.457;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=-1.427;QD=20.70;ReadPosRankSum=-0.263;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,124:128:99:2683,281,0 chrVII 590933 . C A 2806 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=22.45;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2839,300,0 chrVII 590944 . C T 2050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.315;DP=118;Dels=0.01;FS=22.173;HaplotypeScore=8.2193;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=2.396;QD=17.37;ReadPosRankSum=3.637;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:7,110:117:99:2083,231,0 chrVII 591667 . A G 4350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=204;Dels=0.00;FS=2.850;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=1.294;QD=21.32;ReadPosRankSum=2.425;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4350,483,0 chrVII 591688 . A G 3703.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=20.24;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3703,414,0 chrVII 591689 . C T 3684.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=20.02;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3684,405,0 chrVII 592001 . T G 3623.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.9791;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.64;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3623,417,0 chrVII 592119 . G C 3210.99 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=19.11;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3244,375,0 chrVII 592123 . A T 3111 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.2274;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.85;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3144,339,0 chrVII 592271 . G A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.64;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3972,420,0 chrVII 592334 . G A 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.114;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.8076;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.620;QD=22.10;ReadPosRankSum=1.582;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4176,437,0 chrVII 592517 . C A 5187.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5187,547,0 chrVII 592660 . G A 5169.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=18.6883;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=20.93;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5169,573,0 chrVII 592899 . G T 4499.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=27.9528;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.54;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4499,492,0 chrVII 592944 . T A 4211.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=18.3493;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.86;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4211,471,0 chrVII 593092 . G T 3596.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.3044;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.97;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3596,402,0 chrVII 593139 . G T 4598.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.0711;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=24.59;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4598,492,0 chrVII 593220 . G A 2573 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=22.97;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2606,282,0 chrVII 593224 . C T 2428 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=22.07;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2461,261,0 chrVII 593486 . T A 3626.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=25.90;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3626,387,0 chrVII 593640 . A C 4339.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.91;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4339,495,0 chrVII 593663 . C A 5147.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.57;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5147,555,0 chrVII 593805 . G A 4804.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.66;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4804,511,0 chrVII 594021 . G C 5249.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.92;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:0,225:229:99:5249,591,0 chrVII 594163 . T C 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=173;Dels=0.00;FS=4.431;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-1.249;QD=20.93;ReadPosRankSum=1.712;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3621,402,0 chrVII 594243 . G A 3794.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.36;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3794,417,0 chrVII 594249 . C T 3663.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.18;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:3663,396,0 chrVII 594395 . A C 4090.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.35;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4090,456,0 chrVII 594420 . G A 3803.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.61;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3803,408,0 chrVII 594465 . G C 4028.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.34;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,194:198:99:4028,447,0 chrVII 594592 . C T 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.060;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.8527;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=1.610;QD=21.62;ReadPosRankSum=1.060;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,169:173:99:3741,411,0 chrVII 594654 . G C 3304.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.48;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3304,366,0 chrVII 594770 . T A 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.655;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.165;QD=22.12;ReadPosRankSum=1.702;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2599,279,0 chrVII 594794 . T C 2442 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.23;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2475,285,0 chrVII 594854 . T C 2182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-0.815;QD=20.98;ReadPosRankSum=1.698;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2215,243,0 chrVII 594882 . T C 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3717;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=1.204;QD=19.88;ReadPosRankSum=1.633;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2140,240,0 chrVII 594905 . T C 2305 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.40;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2338,267,0 chrVII 594909 . C T 2503 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.96;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2536,273,0 chrVII 595004 . G C 2511 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.7358;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.03;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2544,288,0 chrVII 595161 . T C 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=1.113;QD=23.25;ReadPosRankSum=1.709;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3558,396,0 chrVII 595230 . T C 3649.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.39;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3649,414,0 chrVII 595272 . G A 3898.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.21;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3898,411,0 chrVII 595403 . C T 5208.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.4460;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.11;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5208,562,0 chrVII 595660 . C T 4222.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.85;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4222,459,0 chrVII 595888 . T C 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.767;QD=23.32;ReadPosRankSum=1.710;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3708,417,0 chrVII 595912 . G A 2902 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=21.82;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2935,315,0 chrVII 595917 . G C 2589 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=20.71;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2622,291,0 chrVII 596110 . T C 2283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=114;Dels=0.00;FS=3.999;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-1.732;QD=20.03;ReadPosRankSum=1.640;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2316,261,0 chrVII 596121 . T C 2276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=3.512;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=0.913;QD=20.69;ReadPosRankSum=1.701;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2309,255,0 chrVII 596280 . A T 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.441;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-0.955;QD=21.96;ReadPosRankSum=1.700;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2405,258,0 chrVII 596370 . T A 3035 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.32;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3068,342,0 chrVII 596396 . A G 2792 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.81;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2825,324,0 chrVII 596464 . T C 3320.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.22;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3320,372,0 chrVII 596542 . A G 2753 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=18.60;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2786,309,0 chrVII 596544 . T C 2734 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=18.11;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2767,309,0 chrVII 596935 . A T 4175.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.2480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4175,447,0 chrVII 597126 . G C 3228.29 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3261,375,0 chrVII 597202 . T G 3727.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.01;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3727,435,0 chrVII 597250 . C T 3204 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0047;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.72;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3237,351,0 chrVII 598192 . T C 4288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=184;Dels=0.00;FS=5.251;HaplotypeScore=11.8548;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.039;QD=23.30;ReadPosRankSum=3.355;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:4,180:184:99:4288,486,0 chrVII 598538 . C T 3010 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.5946;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.27;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3043,324,0 chrVII 598680 . C T 2520 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.54;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2553,276,0 chrVII 598733 . C T 2986 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=21.33;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3019,330,0 chrVII 598808 . A G 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=3.832;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.597;QD=22.78;ReadPosRankSum=1.702;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2698,300,0 chrVII 598851 . A T 2408 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.5078;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=22.30;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2441,261,0 chrVII 599197 . C G 2919 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.80;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2952,330,0 chrVII 599515 . G A 4365.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.4096;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4365,474,0 chrVII 599725 . C T 3847.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3847,417,0 chrVII 599815 . T C 2781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.792;QD=21.39;ReadPosRankSum=1.705;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2814,321,0 chrVII 599836 . C T 2743 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.94;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2776,297,0 chrVII 600158 . A T 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=172;Dels=0.00;FS=6.099;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.389;QD=21.16;ReadPosRankSum=2.851;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:3639,396,0 chrVII 600628 . T C 3869.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.86;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3869,426,0 chrVII 600706 . C T 2927 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.84;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2960,324,0 chrVII 600718 . T G 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.038;QD=20.46;ReadPosRankSum=1.707;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2857,321,0 chrVII 601612 . T A 2970 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.3390;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3003,315,0 chrVII 601696 . A G 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=124;Dels=0.00;FS=3.926;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.673;QD=22.15;ReadPosRankSum=1.646;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,120:124:99:2779,315,0 chrVII 601780 . T C 2653 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2686,306,0 chrVII 601975 . T C 2599 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.41;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2632,297,0 chrVII 602135 . C T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.96;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3272,345,0 chrVII 602223 . A C 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=146;Dels=0.00;FS=2.544;HaplotypeScore=13.9312;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.386;QD=22.96;ReadPosRankSum=1.586;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3352,381,0 chrVII 602565 . C G 3681.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.30;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3681,405,0 chrVII 602740 . A C 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=153;Dels=0.00;FS=5.872;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=-2.327;QD=19.03;ReadPosRankSum=2.912;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:3,145:153:99:2944,333,0 chrVII 602749 . A G 3066 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=20.17;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3099,351,0 chrVII 602869 . A G 3435.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.19;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3435,381,0 chrVII 602908 . C A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.0411;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.63;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3355,360,0 chrVII 602932 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.27;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3265,351,0 chrVII 602980 . T A 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=177;Dels=0.00;FS=3.007;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.789;QD=21.15;ReadPosRankSum=2.380;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3744,414,0 chrVII 603169 . G C 3697.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.9774;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.31;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3697,420,0 chrVII 603238 . A T 2863 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.37;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2896,318,0 chrVII 603286 . C T 3469.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.43;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3469,375,0 chrVII 603531 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.6512;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.00;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3432,366,0 chrVII 603547 . C T 3136 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.3341;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=20.77;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3169,348,0 chrVII 603711 . G A 3872.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.7269;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.75;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3872,414,0 chrVII 603795 . C G 3005 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.0256;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.26;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3038,342,0 chrVII 603829 . C T 3472.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.11;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3472,369,0 chrVII 604033 . A G 2556 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2589,285,0 chrVII 604120 . C A 2992 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.94;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3025,321,0 chrVII 604147 . A C 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=4.260;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.323;QD=20.80;ReadPosRankSum=1.660;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3028,345,0 chrVII 604210 . T C 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=141;Dels=0.00;FS=5.308;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.086;QD=22.58;ReadPosRankSum=2.907;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:3217,363,0 chrVII 604628 . C T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.17;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3290,363,0 chrVII 604866 . C T 3294.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3294,363,0 chrVII 604967 . T C 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.025;QD=21.81;ReadPosRankSum=1.681;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3021,330,0 chrVII 605247 . A G 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=163;Dels=0.00;FS=7.253;HaplotypeScore=10.7607;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.595;QD=23.25;ReadPosRankSum=2.389;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3789,429,0 chrVII 605491 . G A 3697.01 SnpCluster AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=21.01;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3697,408,0 chrVII 605496 . G A 3931.01 SnpCluster AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=21.60;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3931,420,0 chrVII 605497 . G A 3932.01 SnpCluster AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=21.25;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3932,426,0 chrVII 605573 . T C 4365.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.2405;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.73;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4365,486,0 chrVII 605648 . T C 3837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=168;Dels=0.00;FS=5.653;HaplotypeScore=9.8109;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.177;QD=22.84;ReadPosRankSum=2.884;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:3,162:168:99:3837,426,0 chrVII 605710 . C T 4018.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6211;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=25.27;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4018,438,0 chrVII 605796 . C T 3976.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.85;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3976,432,0 chrVII 605832 . G T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.51;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3579,381,0 chrVII 605833 . C T 3494.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.40;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3494,375,0 chrVII 605941 . T C 3499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.573;DP=161;Dels=0.00;FS=9.626;HaplotypeScore=15.9949;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;MQRankSum=-0.930;QD=21.73;ReadPosRankSum=2.892;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:3,155:161:99:3499,393,0 chrVII 606127 . C T 4894.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.59;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4894,540,0 chrVII 606621 . C T 5028.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=13.4498;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.36;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:5028,555,0 chrVII 606678 . A G 5328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=259;Dels=0.00;FS=2.555;HaplotypeScore=18.9560;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.728;QD=20.57;ReadPosRankSum=2.925;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:3,252:259:99:5328,597,0 chrVII 606799 . C T 3821.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3821,408,0 chrVII 606906 . A T 3837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=164;Dels=0.00;FS=2.768;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.515;QD=23.40;ReadPosRankSum=2.389;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3837,411,0 chrVII 607146 . A G 3120 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.37;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3153,354,0 chrVII 607156 . G A 3191 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.63;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3224,345,0 chrVII 607203 . C T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=22.72;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3272,348,0 chrVII 607245 . T C 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.994;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-0.468;QD=21.28;ReadPosRankSum=1.662;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3225,363,0 chrVII 607268 . T A 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=4.363;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;MQRankSum=-1.610;QD=21.96;ReadPosRankSum=1.708;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3151,342,0 chrVII 607269 . T A 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=147;Dels=0.00;FS=8.854;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;MQRankSum=0.244;QD=21.16;ReadPosRankSum=2.416;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3144,345,0 chrVII 607298 . A G 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=137;Dels=0.00;FS=2.591;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=1.265;QD=19.20;ReadPosRankSum=2.378;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2664,297,0 chrVII 607417 . T A 2245 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.02;FS=0.000;HaplotypeScore=21.1617;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=21.80;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2278,249,0 chrVII 607457 . C T 1386 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=17.32;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1419,156,0 chrVII 607458 . C T 1421 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=17.76;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1454,156,0 chrVII 607611 . C T 3066 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.77;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3099,330,0 chrVII 607773 . C A 4890.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.4153;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.21;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4890,543,0 chrVII 607851 . C A 6288.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=13.8396;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.03;SB=-3.401e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:6288,682,0 chrVII 608216 . A G 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=165;Dels=0.00;FS=5.330;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.290;QD=22.09;ReadPosRankSum=2.908;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:3,160:165:99:3645,399,0 chrVII 608589 . A C 2473 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.55;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2506,285,0 chrVII 608627 . T C 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=3.757;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.820;QD=22.22;ReadPosRankSum=1.702;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2566,294,0 chrVII 608636 . C T 2893 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.43;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2926,321,0 chrVII 608825 . T C 2551 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.30;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2584,294,0 chrVII 609250 . A C 2512 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.70;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2545,288,0 chrVII 609307 . G A 2544 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.7485;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=23.34;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2577,270,0 chrVII 609325 . A T 1863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.521;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.7140;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-0.622;QD=18.09;ReadPosRankSum=0.689;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1896,207,0 chrVII 609541 . T C 2363 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.32;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2396,267,0 chrVII 609644 . T C 2049 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.89;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,97:103:99:2082,240,0 chrVII 609711 . C G 1511 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.9585;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=17.57;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1544,171,0 chrVII 609928 . C T 6404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=34.3957;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.900;QD=25.02;ReadPosRankSum=1.637;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,253:255:99:6404,685,0 chrVII 610674 . G A 3623.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3623,387,0 chrVII 611295 . T C 6895.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=9.4027;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.96;SB=-3.105e+03 GT:AD:DP:GQ:PL 1/1:0,312:314:99:6895,774,0 chrVII 611358 . T C 5433.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=13.9145;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.42;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:5433,612,0 chrVII 611447 . G A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=23.09;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3579,378,0 chrVII 611513 . A G 222 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.533;DP=102;Dels=0.00;FS=5.024;HaplotypeScore=153.2140;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.801;QD=2.18;ReadPosRankSum=-6.574;SB=3.00 GT:AD:DP:GQ:PL 1/1:79,23:102:33:255,33,0 chrVII 611693 . T C 52.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:85,9,0 chrVII 611743 . C A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:57,6,0 chrVII 612759 . C T 4072.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.06;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4072,441,0 chrVII 612771 . A G 3632.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.25;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3632,408,0 chrVII 612801 . T C 3396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=199;Dels=0.00;FS=7.582;HaplotypeScore=23.1200;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.750;QD=17.07;ReadPosRankSum=2.412;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:3396,378,0 chrVII 612984 . T C 3472.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.3797;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.70;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3472,390,0 chrVII 613028 . C T 4017.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.09;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4017,435,0 chrVII 613191 . C T 4827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.9508;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.207;QD=22.77;ReadPosRankSum=1.371;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4827,528,0 chrVII 613680 . T C 5832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=16.4274;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.053;QD=22.26;ReadPosRankSum=1.692;SB=-3.008e+03 GT:AD:DP:GQ:PL 1/1:1,259:262:99:5832,660,0 chrVII 613788 . G T 3811.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3811,411,0 chrVII 613975 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.1314;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3432,381,0 chrVII 614445 . A G 5324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=241;Dels=0.00;FS=2.790;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=0.423;QD=22.09;ReadPosRankSum=2.409;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:2,239:241:99:5324,603,0 chrVII 614457 . G A 5647.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=7.1682;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.59;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5647,612,0 chrVII 614781 . G A 3901.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.4129;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.08;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3901,408,0 chrVII 615540 . C T 4199.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=17.2665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4199,450,0 chrVII 615761 . C G 3854.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.7186;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3854,432,0 chrVII 616021 . C A 3010 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3043,324,0 chrVII 616436 . T C 4412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=201;Dels=0.00;FS=6.676;HaplotypeScore=8.5706;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.166;QD=21.95;ReadPosRankSum=2.425;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4412,504,0 chrVII 616546 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=3.034;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-1.713;QD=20.35;ReadPosRankSum=1.638;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:3786,423,0 chrVII 616562 . T C 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=183;Dels=0.00;FS=3.034;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.407;QD=19.25;ReadPosRankSum=2.422;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:2,177:183:99:3522,390,0 chrVII 616811 . G A 2622 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.4131;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=19.57;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2655,294,0 chrVII 616847 . T G 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.2857;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.462;QD=20.26;ReadPosRankSum=1.687;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3194,369,0 chrVII 617178 . C T 3188 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.45;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3221,342,0 chrVII 617360 . C A 2287 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=13.6456;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.42;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2320,249,0 chrVII 617675 . T G 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=3.078;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.404;QD=21.56;ReadPosRankSum=1.696;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4162,486,0 chrVII 617867 . G A 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=1.097;QD=22.47;ReadPosRankSum=1.679;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2976,300,0 chrVII 617973 . A G 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=162;Dels=0.00;FS=5.423;HaplotypeScore=5.6997;MLEAC=2;MLEAF=1.00;MQ=60.01;MQ0=0;MQRankSum=1.801;QD=22.07;ReadPosRankSum=1.777;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:3575,402,0 chrVII 618008 . A G 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=131;Dels=0.00;FS=3.027;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.539;QD=23.07;ReadPosRankSum=2.298;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:3055,348,0 chrVII 618061 . C T 2616 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.55;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2649,288,0 chrVII 618124 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.54;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3632,405,0 chrVII 618236 . C A 5438.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=31.1933;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.75;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,236:239:99:5438,583,0 chrVII 618272 . C T 6826.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=23.9947;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.64;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,274:277:99:6826,744,0 chrVII 618689 . A G 4799.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.12;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4799,537,0 chrVII 618860 . C T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.52;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3317,351,0 chrVII 618889 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.76;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2940,315,0 chrVII 618943 . T G 2509 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.40;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2542,282,0 chrVII 618974 . G A 2316 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.27;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2349,252,0 chrVII 618995 . G A 2369 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.14;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2402,258,0 chrVII 619061 . G A 2850 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=23.55;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2883,312,0 chrVII 619085 . G A 2663 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.48;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2696,285,0 chrVII 619211 . T C 3554.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.21;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3554,405,0 chrVII 619238 . G A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=19.89;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3520,399,0 chrVII 619256 . G A 3479.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=20.35;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3479,372,0 chrVII 619274 . A G 2578 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=15.91;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:2611,294,0 chrVII 619295 . T C 2406 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.0470;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=14.76;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2439,279,0 chrVII 619322 . G C 2859 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.7602;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=16.43;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:2892,330,0 chrVII 619415 . A G 4874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.799;QD=22.26;ReadPosRankSum=1.700;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4874,552,0 chrVII 619523 . A C 5685.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=8.8588;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=22.38;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5685,651,0 chrVII 619787 . G A 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.239;DP=184;Dels=0.00;FS=2.342;HaplotypeScore=8.7254;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-2.356;QD=18.39;ReadPosRankSum=2.970;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:4,178:184:99:3383,369,0 chrVII 619788 . T G 3227.04 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.01;FS=0.000;HaplotypeScore=8.7254;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=17.73;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,176:180:99:3260,366,0 chrVII 619872 . G T 3188 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.27;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3221,342,0 chrVII 620004 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=21.89;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3142,336,0 chrVII 620150 . A G 3276.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.23;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3276,369,0 chrVII 620222 . T A 4048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=181;Dels=0.00;FS=4.003;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=0.928;QD=22.36;ReadPosRankSum=1.713;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4048,429,0 chrVII 620225 . G T 3948.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.93;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3948,417,0 chrVII 620294 . A C 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.1205;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.660;QD=20.01;ReadPosRankSum=2.421;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3461,390,0 chrVII 620311 . G C 3280.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.2057;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.64;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,162:167:99:3280,369,0 chrVII 620376 . A G 3311.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.69;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3311,366,0 chrVII 620379 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=21.68;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3426,366,0 chrVII 620578 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=182;Dels=0.00;FS=3.058;HaplotypeScore=10.7863;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-0.514;QD=22.31;ReadPosRankSum=1.713;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4060,456,0 chrVII 620637 . G A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.8351;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.28;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3944,435,0 chrVII 620815 . A G 3998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.3768;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.565;QD=23.94;ReadPosRankSum=1.669;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3998,444,0 chrVII 620954 . C T 3834.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.2433;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.69;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3834,426,0 chrVII 621137 . A C 4135.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.21;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4135,465,0 chrVII 621311 . G A 3784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.538;QD=21.50;ReadPosRankSum=-0.796;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3784,397,0 chrVII 621543 . C G 3309.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.51;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3309,369,0 chrVII 621754 . C T 2845 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.71;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2878,306,0 chrVII 621807 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3508,372,0 chrVII 621908 . T C 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=129;Dels=0.00;FS=9.445;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;MQRankSum=-1.633;QD=21.53;ReadPosRankSum=2.946;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2811,315,0 chrVII 622186 . C T 3407.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.18;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3407,354,0 chrVII 622300 . A T 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=151;Dels=0.00;FS=6.024;HaplotypeScore=12.2338;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.389;QD=21.23;ReadPosRankSum=2.926;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3238,345,0 chrVII 622579 . G A 4114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.478;DP=191;Dels=0.00;FS=3.725;HaplotypeScore=3.1424;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=0.299;QD=21.54;ReadPosRankSum=-1.660;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4114,420,0 chrVII 622594 . T C 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=-0.559;QD=20.10;ReadPosRankSum=1.676;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3739,423,0 chrVII 622595 . T A 4001.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=21.51;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4001,426,0 chrVII 622738 . C T 5164.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.95;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:5164,558,0 chrVII 623101 . T C 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=3.342;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.382;QD=23.83;ReadPosRankSum=1.713;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4241,486,0 chrVII 623199 . G A 4885.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4885,523,0 chrVII 623404 . C A 4371.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.88;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4371,483,0 chrVII 623695 . A G 4153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.035;DP=200;Dels=0.00;FS=19.079;HaplotypeScore=5.1048;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=-0.860;QD=20.77;ReadPosRankSum=4.121;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:6,193:200:99:4153,462,0 chrVII 623700 . G A 4078.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=21.69;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4078,432,0 chrVII 623717 . T C 3515.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=19.75;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3515,393,0 chrVII 624057 . T C 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=154;Dels=0.00;FS=9.099;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.406;QD=22.08;ReadPosRankSum=2.385;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3400,378,0 chrVII 624410 . T G 4546.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.43;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4546,531,0 chrVII 624442 . A G 4694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=213;Dels=0.00;FS=5.684;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-1.174;QD=22.04;ReadPosRankSum=1.634;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:4694,522,0 chrVII 624487 . A G 5433.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=20.58;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:5433,615,0 chrVII 624507 . T C 5948.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.71;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:5948,672,0 chrVII 624532 . G A 5900.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=9.9412;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.01;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:5900,639,0 chrVII 624564 . C T 5302.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.47;SB=-3.230e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5302,565,0 chrVII 625088 . G A 5084.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=21.0841;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5084,558,0 chrVII 625204 . A G 5635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=268;Dels=0.00;FS=3.076;HaplotypeScore=20.0122;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.469;QD=21.03;ReadPosRankSum=1.719;SB=-3.173e+03 GT:AD:DP:GQ:PL 1/1:1,265:268:99:5635,639,0 chrVII 625418 . A G 4692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=254;Dels=0.00;FS=2.859;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.073;QD=18.47;ReadPosRankSum=2.401;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:2,251:254:99:4692,537,0 chrVII 625898 . A G 4535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.162;QD=22.23;ReadPosRankSum=1.681;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4535,519,0 chrVII 625957 . G A 4365.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.9692;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.61;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4365,457,0 chrVII 626137 . C T 4238.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.42;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4238,451,0 chrVII 626170 . C T 4139.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.2469;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.12;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4139,444,0 chrVII 626202 . T C 4564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.645;QD=22.71;ReadPosRankSum=1.680;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4564,522,0 chrVII 626335 . C T 3556.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0150;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.04;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3556,384,0 chrVII 626350 . C T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.63;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3610,402,0 chrVII 626453 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.6837;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=18.63;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3032,324,0 chrVII 626470 . G A 2597 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=17.91;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2630,291,0 chrVII 626510 . C T 3184 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.66;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3217,342,0 chrVII 626794 . A T 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=3.237;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.732;QD=22.11;ReadPosRankSum=1.644;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2642,291,0 chrVII 626899 . C T 3033 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.98;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3066,327,0 chrVII 627235 . C T 883 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=23.86;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:99:916,99,0 chrVII 627362 . A T 1991 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.58;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2024,216,0 chrVII 627463 . G A 2543 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.77;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2576,279,0 chrVII 627743 . A G 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=92;Dels=0.00;FS=4.677;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-1.199;QD=20.05;ReadPosRankSum=1.618;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1878,210,0 chrVII 627746 . T C 1779 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.13;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1812,207,0 chrVII 627883 . A G 2151 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.21;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2184,258,0 chrVII 627896 . T C 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-1.630;QD=20.46;ReadPosRankSum=2.372;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2611,288,0 chrVII 627924 . A C 2387 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=18.65;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2420,270,0 chrVII 628012 . G A 3273.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=24.80;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3273,351,0 chrVII 628050 . G T 3149 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.6838;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.99;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3182,345,0 chrVII 628090 . T A 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=147;Dels=0.00;FS=3.552;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-1.206;QD=20.99;ReadPosRankSum=1.660;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3118,348,0 chrVII 628417 . T C 4106.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.7591;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.39;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4106,459,0 chrVII 628549 . C T 4279.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.5156;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.88;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4279,459,0 chrVII 628576 . A G 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-0.577;QD=20.92;ReadPosRankSum=1.670;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3514,393,0 chrVII 628627 . C T 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.395;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.110;QD=20.74;ReadPosRankSum=0.592;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3297,342,0 chrVII 628640 . A C 3157 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.98;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3190,363,0 chrVII 628754 . T C 3763.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.9801;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.23;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3763,420,0 chrVII 628958 . T A 3824.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.36;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3824,408,0 chrVII 629110 . A T 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.503;QD=23.68;ReadPosRankSum=1.704;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2969,315,0 chrVII 629203 . G A 3152 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.25;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3185,345,0 chrVII 629518 . T C 4128.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.57;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4128,465,0 chrVII 629731 . G A 4094.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.01;FS=0.000;HaplotypeScore=6.8429;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.26;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4094,441,0 chrVII 629749 . T C 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=189;Dels=0.00;FS=6.091;HaplotypeScore=7.4806;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=0.164;QD=21.49;ReadPosRankSum=2.397;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:2,185:189:99:4062,459,0 chrVII 629819 . A G 4073.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.90;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4073,450,0 chrVII 629962 . C T 3740.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.67;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3740,396,0 chrVII 629998 . C T 4434.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.7176;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.23;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4434,492,0 chrVII 630340 . C G 1717 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=14.68;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1750,198,0 chrVII 630344 . G A 1649 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=14.09;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1682,180,0 chrVII 630469 . A G 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=92;Dels=0.00;FS=5.898;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=0.789;QD=20.05;ReadPosRankSum=2.923;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:3,89:92:99:1878,216,0 chrVII 630496 . A C 2022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;MQRankSum=-0.375;QD=20.22;ReadPosRankSum=1.661;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:1,96:100:99:2055,240,0 chrVII 630532 . C T 2263 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5983;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=22.63;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2296,246,0 chrVII 630535 . T C 2118 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=21.39;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2151,240,0 chrVII 630604 . T C 2015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=97;Dels=0.00;FS=3.433;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=-1.054;QD=20.77;ReadPosRankSum=1.696;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2048,228,0 chrVII 630680 . G A 1638 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=21.55;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1671,177,0 chrVII 630686 . C A 1567 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=20.09;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1600,168,0 chrVII 630709 . G A 1244 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=18.57;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1277,141,0 chrVII 630817 . C T 2143 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.63;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2176,231,0 chrVII 630914 . A G 2364 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.88;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2397,270,0 chrVII 631257 . A G 2118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-1.173;QD=22.77;ReadPosRankSum=1.695;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2151,240,0 chrVII 631282 . C T 2062 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=23.70;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:2095,222,0 chrVII 631474 . T C 2080 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=22.13;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2113,234,0 chrVII 631481 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.54;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2129,231,0 chrVII 631532 . A G 2415 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.48;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2448,276,0 chrVII 631547 . A T 2472 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.10;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2505,273,0 chrVII 631584 . C T 3217.04 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.48;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3250,351,0 chrVII 631647 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.56;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3414,372,0 chrVII 631970 . G C 3437.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.62;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3437,387,0 chrVII 631995 . C A 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.363;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.092;QD=21.61;ReadPosRankSum=1.609;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3674,399,0 chrVII 632357 . C A 2484 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.2219;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.21;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2517,273,0 chrVII 632457 . T C 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=113;Dels=0.00;FS=2.899;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.862;QD=23.22;ReadPosRankSum=2.406;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2657,300,0 chrVII 632984 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.02;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2771,300,0 chrVII 633090 . C A 2913 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.96;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2946,315,0 chrVII 633258 . C T 2572 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.98;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2605,276,0 chrVII 633265 . A G 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=3.409;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.912;QD=20.39;ReadPosRankSum=1.671;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2378,267,0 chrVII 633390 . C T 2745 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2778,300,0 chrVII 633626 . T C 2370 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9546;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.61;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2403,273,0 chrVII 633803 . T C 2985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.3496;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.832;QD=23.50;ReadPosRankSum=1.705;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3018,342,0 chrVII 633894 . A G 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.890;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-1.415;QD=18.46;ReadPosRankSum=1.674;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2248,252,0 chrVII 633895 . T G 2158 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=18.13;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2191,246,0 chrVII 634798 . T C 2542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=116;Dels=0.00;FS=3.048;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.491;QD=21.91;ReadPosRankSum=1.642;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2575,288,0 chrVII 634898 . G T 3170 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3203,339,0 chrVII 635290 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2803,303,0 chrVII 635353 . A G 1059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.031;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.194;QD=17.95;ReadPosRankSum=2.325;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1092,126,0 chrVII 635537 . T A 49.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=9.99;SB=-5.021e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:82,9,0 chrVII 635585 . T G 262 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.71;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:33:295,33,0 chrVII 635792 . T C 3681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=0.660;QD=21.16;ReadPosRankSum=2.379;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3681,417,0 chrVII 635804 . G A 3723.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.2495;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.03;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3723,408,0 chrVII 635861 . C T 4147.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.33;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4147,450,0 chrVII 636162 . G A 4099.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.1338;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4099,453,0 chrVII 637449 . C T 3607.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.99;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3607,396,0 chrVII 637458 . A G 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.382;DP=159;Dels=0.00;FS=14.214;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=1.006;QD=22.60;ReadPosRankSum=3.404;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:4,155:159:99:3593,396,0 chrVII 637614 . C T 3110 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.8786;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.60;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3143,336,0 chrVII 637963 . T C 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=143;Dels=0.00;FS=3.461;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.244;QD=19.08;ReadPosRankSum=1.708;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2761,300,0 chrVII 638188 . G A 3678.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.20;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3678,396,0 chrVII 638253 . T C 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=3.185;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.527;QD=22.46;ReadPosRankSum=1.664;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3414,387,0 chrVII 638787 . T C 3722.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.42;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3722,429,0 chrVII 638835 . C T 3470.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.29;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3470,381,0 chrVII 638846 . A T 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=156;Dels=0.00;FS=4.688;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-0.910;QD=19.83;ReadPosRankSum=1.710;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3127,336,0 chrVII 638935 . A G 4244.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.2628;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.70;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4244,486,0 chrVII 639017 . C T 5215.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.2095;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.72;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5215,564,0 chrVII 639055 . T G 5161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=223;Dels=0.00;FS=3.070;HaplotypeScore=10.8450;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-0.878;QD=23.14;ReadPosRankSum=1.716;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:1,218:223:99:5161,570,0 chrVII 639085 . A G 4275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=182;Dels=0.00;FS=6.093;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.265;QD=23.49;ReadPosRankSum=2.368;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:4275,480,0 chrVII 639145 . G C 3776.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=19.3702;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.95;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3776,423,0 chrVII 639331 . T C 5398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.2407;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.309;QD=23.57;ReadPosRankSum=1.687;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5398,606,0 chrVII 639460 . C T 4190.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.29;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4190,445,0 chrVII 639627 . G A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.7133;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.65;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3571,387,0 chrVII 639686 . A C 248.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.964;DP=111;Dels=0.00;FS=7.402;HaplotypeScore=130.7318;MLEAC=1;MLEAF=0.500;MQ=53.19;MQ0=0;MQRankSum=2.649;QD=2.23;ReadPosRankSum=-6.639;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:85,26:111:99:278,0,220 chrVII 639690 . A C 138.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=16.0428;MLEAC=1;MLEAF=0.500;MQ=52.51;MQ0=0;MQRankSum=-1.412;QD=1.28;ReadPosRankSum=6.627;SB=-7.170e+02 GT:AD:DP:GQ:PL 0/1:29,78:108:99:168,0,299 chrVII 639715 . T C 1929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=2.930;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=0.125;QD=17.86;ReadPosRankSum=2.359;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:1962,219,0 chrVII 639762 . T A 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=0.143;QD=19.20;ReadPosRankSum=1.700;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2126,234,0 chrVII 639768 . C T 2101 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.28;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2134,237,0 chrVII 639931 . A G 3029 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.9888;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.27;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3062,342,0 chrVII 640411 . C T 3682.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.1933;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.01;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3682,396,0 chrVII 640432 . A G 3425.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.5509;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.30;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3425,384,0 chrVII 640786 . T C 3501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.155;QD=20.72;ReadPosRankSum=2.361;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:2,165:169:99:3501,390,0 chrVII 641220 . T C 7458.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=373;Dels=0.00;FS=4.194;HaplotypeScore=29.4188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.602;QD=19.99;ReadPosRankSum=1.695;SB=-3.513e+03 GT:AD:DP:GQ:PL 1/1:1,372:373:99:7458,831,0 chrVII 642042 . A G 4284.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4284,474,0 chrVII 642145 . G A 5021.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=23.35;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5021,540,0 chrVII 642162 . G A 4767.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.28;SB=-2.920e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4767,511,0 chrVII 642168 . A G 4414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=227;Dels=0.00;FS=3.146;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=0.359;QD=19.44;ReadPosRankSum=1.702;SB=-2.850e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:4414,504,0 chrVII 642227 . A C 4095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=217;Dels=0.00;FS=2.956;HaplotypeScore=16.3278;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.189;QD=18.87;ReadPosRankSum=2.427;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:2,212:217:99:4095,459,0 chrVII 642373 . T C 3883.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=19.9282;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.57;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3883,435,0 chrVII 642480 . A G 4063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.060;QD=23.35;ReadPosRankSum=1.672;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:4063,456,0 chrVII 642561 . A G 3111 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.31;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3144,357,0 chrVII 642577 . C T 2811 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=20.22;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2844,303,0 chrVII 642606 . A T 2586 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.05;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2619,279,0 chrVII 642633 . C T 2813 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.5035;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=18.39;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2846,315,0 chrVII 642723 . T C 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.131;DP=162;Dels=0.00;FS=6.605;HaplotypeScore=17.5517;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.265;QD=22.23;ReadPosRankSum=2.389;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3602,414,0 chrVII 642915 . T C 3093 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=14.3992;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.63;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3126,354,0 chrVII 643082 . G T 2998 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=23.42;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3031,324,0 chrVII 643337 . C T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8247;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.85;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3839,414,0 chrVII 643372 . C T 4492.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.0984;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.82;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4492,469,0 chrVII 643548 . G C 4588.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.38;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4588,501,0 chrVII 643560 . T C 4891.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.8877;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.13;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4891,534,0 chrVII 643620 . T G 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=211;Dels=0.00;FS=5.965;HaplotypeScore=15.6697;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.115;QD=20.85;ReadPosRankSum=2.967;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:3,207:211:99:4400,498,0 chrVII 643727 . A G 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-0.871;QD=21.20;ReadPosRankSum=1.712;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3689,414,0 chrVII 643743 . A G 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.4583;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-1.214;QD=20.86;ReadPosRankSum=1.692;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:3692,420,0 chrVII 644097 . A T 4887.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.5130;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=21.72;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4887,531,0 chrVII 644130 . T C 4935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=232;Dels=0.00;FS=2.977;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.016;QD=21.27;ReadPosRankSum=2.385;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:2,227:232:99:4935,558,0 chrVII 644400 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=185;Dels=0.00;FS=2.736;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.746;QD=19.97;ReadPosRankSum=2.423;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3695,414,0 chrVII 644454 . C T 3189 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=17.7364;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.65;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3222,357,0 chrVII 644828 . C T 734 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:84:767,84,0 chrVII 644858 . G A 1448 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1481,165,0 chrVII 644941 . A G 1179 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1212,138,0 chrVII 645493 . T G 4003.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.3125;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.12;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4003,462,0 chrVII 645531 . C T 4529.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.65;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4529,489,0 chrVII 645550 . T C 3931.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.95;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:3931,438,0 chrVII 645889 . T C 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=150;Dels=0.00;FS=5.354;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.710;QD=22.97;ReadPosRankSum=2.953;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:3,146:150:99:3446,396,0 chrVII 645955 . C T 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.237;DP=178;Dels=0.00;FS=3.797;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.208;QD=21.08;ReadPosRankSum=-1.099;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:3753,414,0 chrVII 645958 . G T 3773.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.73;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3773,411,0 chrVII 646006 . G A 3757.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.6873;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.98;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3757,391,0 chrVII 646047 . T C 4229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=213;Dels=0.00;FS=2.871;HaplotypeScore=3.4648;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=0.098;QD=19.85;ReadPosRankSum=2.403;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4229,468,0 chrVII 646051 . G A 4405.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=12.6018;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.15;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,225:230:99:4405,469,0 chrVII 646177 . T C 5822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=277;Dels=0.00;FS=5.655;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.200;QD=21.02;ReadPosRankSum=2.924;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:3,273:277:99:5822,672,0 chrVII 646471 . A G 4480.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.8336;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=21.13;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4480,522,0 chrVII 646768 . T C 4246.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.6857;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.34;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4246,483,0 chrVII 646899 . A G 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.195;DP=133;Dels=0.00;FS=5.169;HaplotypeScore=12.3545;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.693;QD=21.77;ReadPosRankSum=3.392;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:4,129:133:99:2928,330,0 chrVII 647032 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=19.82;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1856,204,0 chrVII 647038 . T C 1771 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=18.84;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1804,204,0 chrVII 647208 . C T 3208 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.70;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3241,348,0 chrVII 647220 . A G 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=158;Dels=0.00;FS=3.746;HaplotypeScore=9.6910;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=0.765;QD=19.36;ReadPosRankSum=1.687;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,153:158:99:3092,348,0 chrVII 647522 . A G 3034 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.67;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3067,345,0 chrVII 647545 . C T 3413.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.45;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3413,369,0 chrVII 647725 . T G 4399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=189;Dels=0.00;FS=2.858;HaplotypeScore=8.2908;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-1.822;QD=23.28;ReadPosRankSum=2.345;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4399,489,0 chrVII 647750 . G A 4380.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=22.23;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4380,474,0 chrVII 647762 . G T 4390.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.84;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4390,468,0 chrVII 647897 . T A 5353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=10.4885;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.063;QD=22.30;ReadPosRankSum=1.688;SB=-3.032e+03 GT:AD:DP:GQ:PL 1/1:1,239:240:99:5353,600,0 chrVII 648278 . C G 4271.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.84;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4271,483,0 chrVII 648317 . T A 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=190;Dels=0.00;FS=6.373;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=1.930;QD=22.96;ReadPosRankSum=2.385;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4362,483,0 chrVII 648788 . T C 3799.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=163;Dels=0.00;FS=6.392;HaplotypeScore=8.6430;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=7;MQRankSum=-1.536;QD=23.31;ReadPosRankSum=2.418;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:6,157:163:99:3799,426,0 chrVII 648839 . A G 3837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.905;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=18.2912;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=-0.751;QD=21.93;ReadPosRankSum=0.498;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3837,421,0 chrVII 648936 . G A 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.1859;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;MQRankSum=-0.218;QD=25.03;ReadPosRankSum=0.883;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3829,403,0 chrVII 649033 . A C 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.606;QD=23.39;ReadPosRankSum=1.703;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2840,318,0 chrVII 649105 . G A 2183 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=20.21;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2216,234,0 chrVII 649151 . T G 1508 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=13.35;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1541,177,0 chrVII 649172 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=15.45;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1856,201,0 chrVII 649387 . G A 2142 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;QD=23.28;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2175,237,0 chrVII 649458 . A G 925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.058;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=71.6309;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;MQRankSum=-0.681;QD=10.88;ReadPosRankSum=1.029;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:92:958,92,0 chrVII 649473 . G A 1145 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=77.5800;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=12.18;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1178,129,0 chrVII 649533 . G A 1509 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=17.34;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1542,171,0 chrVII 649569 . G T 328.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.631;DP=115;Dels=0.00;FS=86.032;HaplotypeScore=2.8350;MLEAC=1;MLEAF=0.500;MQ=53.70;MQ0=0;MQRankSum=-1.132;QD=2.85;ReadPosRankSum=-5.015;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,52:115:99:358,0,558 chrVII 649661 . A G 5492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.143;DP=247;Dels=0.00;FS=16.193;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-1.302;QD=22.23;ReadPosRankSum=2.755;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:4,243:247:99:5492,639,0 chrVII 649761 . C T 5959.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.49;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,263:265:99:5959,631,0 chrVII 649865 . A G 6199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.635;DP=308;Dels=0.00;FS=7.945;HaplotypeScore=31.4724;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.896;QD=20.13;ReadPosRankSum=3.787;SB=-3.067e+03 GT:AD:DP:GQ:PL 1/1:5,303:308:99:6199,693,0 chrVII 649961 . G A 5966.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.93;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,284:285:99:5966,640,0 chrVII 649985 . C T 5707.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=7.7165;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.14;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:0,268:270:99:5707,610,0 chrVII 650278 . A G 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.714;QD=21.96;ReadPosRankSum=1.714;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4128,459,0 chrVII 650623 . A G 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.603;DP=163;Dels=0.00;FS=7.931;HaplotypeScore=18.3443;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=1.501;QD=20.82;ReadPosRankSum=3.757;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:5,157:163:99:3393,387,0 chrVII 650685 . A G 4628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.2060;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-0.947;QD=22.58;ReadPosRankSum=1.664;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:4628,516,0 chrVII 650707 . G A 4254.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=20.16;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4254,465,0 chrVII 650728 . G A 4518.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.82;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4518,483,0 chrVII 650978 . C G 1265 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=12.6670;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=15.06;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1298,147,0 chrVII 651204 . T C 2322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=3.171;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=-0.850;QD=21.11;ReadPosRankSum=1.701;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2355,261,0 chrVII 651243 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.9298;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=21.05;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2769,300,0 chrVII 651274 . G A 2857 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.9348;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=16.61;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:2890,312,0 chrVII 651425 . A G 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=3.514;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-1.376;QD=21.51;ReadPosRankSum=1.661;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3174,363,0 chrVII 651434 . A G 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=158;Dels=0.00;FS=3.358;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-1.421;QD=19.92;ReadPosRankSum=1.710;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3180,366,0 chrVII 651592 . G A 4335.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=17.1931;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.94;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4335,457,0 chrVII 651740 . G A 5413.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.74;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5413,624,0 chrVII 651755 . C T 5826.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=14.2492;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.76;SB=-2.839e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5826,628,0 chrVII 651854 . T C 5495.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=13.4883;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.72;SB=-2.974e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:5495,621,0 chrVII 651961 . C T 5002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=242;Dels=0.00;FS=4.901;HaplotypeScore=16.8756;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-1.543;QD=20.67;ReadPosRankSum=0.961;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:5002,538,0 chrVII 652013 . A G 4451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=239;Dels=0.00;FS=2.936;HaplotypeScore=4.2324;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-1.381;QD=18.62;ReadPosRankSum=2.347;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:2,237:239:99:4451,513,0 chrVII 652017 . A G 4617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-0.849;QD=18.18;ReadPosRankSum=1.704;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:1,250:254:99:4617,516,0 chrVII 652087 . A G 4108.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=19.47;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4108,471,0 chrVII 652173 . T G 3589.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=17.7785;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=19.72;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3589,411,0 chrVII 652243 . G A 3754.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.57;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3754,399,0 chrVII 652295 . T C 2948 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.6681;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.91;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2981,336,0 chrVII 652337 . A G 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=18.8896;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.382;QD=19.48;ReadPosRankSum=2.417;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:3013,339,0 chrVII 652373 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.66;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3648,393,0 chrVII 652400 . G A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.30;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3457,375,0 chrVII 652601 . T C 5964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.357;DP=270;Dels=0.00;FS=5.176;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=0.643;QD=22.09;ReadPosRankSum=3.428;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:4,263:270:99:5964,672,0 chrVII 652613 . G A 6470.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=13.2780;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.19;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,278:279:99:6470,703,0 chrVII 652663 . G A 7373.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.83;SB=-2.972e+03 GT:AD:DP:GQ:PL 1/1:0,322:323:99:7373,813,0 chrVII 652742 . G A 7028.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.79;SB=-4.414e+03 GT:AD:DP:GQ:PL 1/1:0,336:338:99:7028,760,0 chrVII 652754 . T C 6214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=328;Dels=0.00;FS=3.486;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-1.183;QD=18.95;ReadPosRankSum=1.690;SB=-3.652e+03 GT:AD:DP:GQ:PL 1/1:1,327:328:99:6214,711,0 chrVII 652901 . G A 6335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=281;Dels=0.00;FS=6.913;HaplotypeScore=18.7846;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.200;QD=22.54;ReadPosRankSum=-0.594;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,279:281:99:6335,673,0 chrVII 652970 . A G 4444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.967;DP=202;Dels=0.00;FS=10.789;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=1.188;QD=22.00;ReadPosRankSum=4.165;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:6,196:202:99:4444,507,0 chrVII 653026 . T A 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.127;QD=21.99;ReadPosRankSum=1.690;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3607,405,0 chrVII 653036 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=153;Dels=0.00;FS=10.103;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=-0.901;QD=21.54;ReadPosRankSum=1.770;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3296,355,0 chrVII 653044 . G A 3278.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=22.30;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3278,357,0 chrVII 653088 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=21.93;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2796,303,0 chrVII 653157 . T G 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=3.705;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.280;QD=21.85;ReadPosRankSum=1.672;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:2590,294,0 chrVII 653224 . T A 1765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.253;DP=113;Dels=0.00;FS=1.776;HaplotypeScore=23.2180;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=1.935;QD=15.62;ReadPosRankSum=2.755;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:10,103:113:99:1798,204,0 chrVII 653248 . A C 522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;MQRankSum=-0.274;QD=5.93;ReadPosRankSum=1.687;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:1,79:87:63:555,63,0 chrVII 653434 . G A 4135.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.2857;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=24.76;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4135,444,0 chrVII 653483 . T C 4304.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=24.04;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4304,471,0 chrVII 653526 . A G 4363.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.71;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4363,489,0 chrVII 653696 . C T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0517;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=25.16;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3598,378,0 chrVII 653750 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=22.23;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3056,330,0 chrVII 653764 . A T 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=144;Dels=0.00;FS=3.024;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;MQRankSum=-0.445;QD=20.98;ReadPosRankSum=2.362;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3054,336,0 chrVII 653791 . C T 2923 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=21.98;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2956,321,0 chrVII 653798 . A G 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.626;QD=19.36;ReadPosRankSum=1.706;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2588,285,0 chrVII 653930 . T C 3399.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.8561;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.36;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3399,396,0 chrVII 653931 . A G 3377.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.6448;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=22.36;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3377,390,0 chrVII 654109 . A C 5772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=260;Dels=0.00;FS=4.160;HaplotypeScore=15.7011;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.577;QD=22.20;ReadPosRankSum=1.705;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:1,258:260:99:5772,648,0 chrVII 654152 . C A 5354.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=20.0710;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=24.34;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5354,568,0 chrVII 654276 . C T 7201.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=18.1747;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=23.46;SB=-3.837e+03 GT:AD:DP:GQ:PL 1/1:0,306:307:99:7201,783,0 chrVII 654308 . A T 7161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=327;Dels=0.00;FS=3.684;HaplotypeScore=6.1584;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=0.503;QD=21.90;ReadPosRankSum=1.711;SB=-3.773e+03 GT:AD:DP:GQ:PL 1/1:1,326:327:99:7161,775,0 chrVII 654320 . T C 6257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=5.5870;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=-0.005;QD=19.43;ReadPosRankSum=1.721;SB=-3.413e+03 GT:AD:DP:GQ:PL 1/1:1,316:322:99:6257,717,0 chrVII 654338 . G A 6014.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=17.5444;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=19.28;SB=-3.642e+03 GT:AD:DP:GQ:PL 1/1:0,309:312:99:6014,654,0 chrVII 654490 . A T 4856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=-1.537;QD=18.19;ReadPosRankSum=1.680;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:1,266:267:99:4856,522,0 chrVII 654500 . T C 4930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=271;Dels=0.00;FS=10.463;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=-0.926;QD=18.19;ReadPosRankSum=2.367;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:2,267:271:99:4930,546,0 chrVII 654526 . T C 4730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=251;Dels=0.00;FS=4.807;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=-1.407;QD=18.84;ReadPosRankSum=1.676;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:1,244:250:99:4730,528,0 chrVII 654601 . A C 4393.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=19.44;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4393,486,0 chrVII 654805 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.44;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3348,360,0 chrVII 654828 . C T 3486.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.24;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3486,384,0 chrVII 654914 . A T 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.550;QD=20.60;ReadPosRankSum=1.664;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3205,342,0 chrVII 655133 . A T 6012.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.4106;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.26;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:6012,646,0 chrVII 655257 . T C 4439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.3508;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-0.786;QD=20.55;ReadPosRankSum=1.684;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4439,501,0 chrVII 655266 . C A 4460.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.46;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4460,480,0 chrVII 655268 . T A 4316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=217;Dels=0.00;FS=2.758;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-0.356;QD=19.89;ReadPosRankSum=2.416;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:4316,480,0 chrVII 655347 . T C 5554.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.36;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:5554,642,0 chrVII 655397 . C A 6012.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=16.6403;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.54;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:6012,631,0 chrVII 655437 . A G 5386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=21.1046;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.577;QD=22.73;ReadPosRankSum=1.717;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:1,233:237:99:5386,603,0 chrVII 655509 . G A 4814.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.5495;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=23.95;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4814,514,0 chrVII 655650 . T C 4698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=218;Dels=0.00;FS=2.846;HaplotypeScore=12.9340;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.526;QD=21.55;ReadPosRankSum=2.393;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:2,215:218:99:4698,534,0 chrVII 655695 . T C 4045.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.63;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4045,453,0 chrVII 655734 . C T 3924.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.81;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3924,426,0 chrVII 655794 . C T 4567.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.29;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4567,495,0 chrVII 655821 . C T 4110.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.96;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4110,438,0 chrVII 655881 . C T 3992.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.0454;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.30;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3992,441,0 chrVII 655924 . G A 4331.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.1828;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.16;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4331,465,0 chrVII 655962 . C T 4180.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.88;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4180,450,0 chrVII 656145 . C T 4368.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.6053;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4368,468,0 chrVII 656239 . A C 2638 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.3435;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=21.45;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2671,294,0 chrVII 656248 . T G 2679 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.1905;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.99;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2712,306,0 chrVII 656393 . G T 2978 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.09;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3011,324,0 chrVII 656510 . A T 2190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=95;Dels=0.00;FS=3.711;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.295;QD=23.05;ReadPosRankSum=1.658;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2223,246,0 chrVII 656566 . G A 2247 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5449;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.20;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2280,252,0 chrVII 656576 . A T 2613 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5430;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.74;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2646,282,0 chrVII 656726 . A G 2330 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.02;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2363,267,0 chrVII 656811 . T A 2280 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.1350;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.92;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2313,246,0 chrVII 656835 . A G 2051 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.5394;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=18.48;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2084,237,0 chrVII 656877 . A G 2117 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=18.73;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2150,237,0 chrVII 657040 . C G 2754 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.57;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2787,321,0 chrVII 657148 . T C 2066 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.87;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2099,240,0 chrVII 657214 . C T 2015 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.14;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2048,216,0 chrVII 657221 . G A 1934 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.94;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1967,213,0 chrVII 657389 . G A 2411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.469;QD=21.92;ReadPosRankSum=1.246;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2444,264,0 chrVII 657546 . T C 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.9195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.783;QD=23.45;ReadPosRankSum=1.706;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3199,357,0 chrVII 657754 . C T 4516.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.6923;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4516,483,0 chrVII 657798 . T C 3640.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3640,417,0 chrVII 657835 . T C 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.180;QD=22.28;ReadPosRankSum=1.688;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3520,393,0 chrVII 657886 . C T 4152.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4152,459,0 chrVII 658228 . T A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.77;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3269,354,0 chrVII 658465 . G C 2440 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2473,282,0 chrVII 658537 . C T 2329 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.06;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2362,255,0 chrVII 658696 . T C 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.6503;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.074;QD=22.80;ReadPosRankSum=1.675;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2815,324,0 chrVII 658876 . T A 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.090;QD=23.43;ReadPosRankSum=1.676;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2938,312,0 chrVII 659167 . A G 3600.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=23.08;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3600,405,0 chrVII 659189 . T A 3167 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.11;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3200,342,0 chrVII 659272 . G A 3297.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.38;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3297,354,0 chrVII 659437 . T C 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=126;Dels=0.00;FS=3.027;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.556;QD=23.04;ReadPosRankSum=2.411;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2936,330,0 chrVII 659458 . G T 3141 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.4675;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.60;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3174,348,0 chrVII 659791 . A G 2123 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.83;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2156,243,0 chrVII 659935 . T A 2120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=108;Dels=0.00;FS=2.977;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=0.330;QD=19.63;ReadPosRankSum=2.381;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2153,243,0 chrVII 659949 . C T 2398 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=20.50;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2431,261,0 chrVII 659973 . G T 2768 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=21.13;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2801,294,0 chrVII 660023 . C T 2866 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=20.77;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2899,309,0 chrVII 660028 . G T 2835 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=20.40;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2868,309,0 chrVII 660169 . C A 3102 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=22.48;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3135,342,0 chrVII 660217 . A C 2988 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=20.61;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3021,339,0 chrVII 660221 . T C 2871 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=20.80;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2904,342,0 chrVII 660351 . G A 3717.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=20.0184;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=24.95;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3717,402,0 chrVII 660461 . C T 2463 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=18.52;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2496,264,0 chrVII 660464 . G C 2389 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=17.83;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2422,276,0 chrVII 660573 . A G 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.004;DP=145;Dels=0.00;FS=10.834;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-1.175;QD=20.99;ReadPosRankSum=4.134;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:6,138:145:99:3077,348,0 chrVII 660643 . G A 3029 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=23.30;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3062,327,0 chrVII 660685 . T C 2637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.450;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.885;QD=19.39;ReadPosRankSum=1.706;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2670,303,0 chrVII 660704 . C G 2757 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=19.55;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2790,312,0 chrVII 660882 . T C 5409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.303;DP=234;Dels=0.00;FS=2.401;HaplotypeScore=18.9351;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=2.183;QD=23.12;ReadPosRankSum=3.363;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:4,228:234:99:5409,612,0 chrVII 661080 . C T 5717.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=10.4038;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=22.51;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:5717,610,0 chrVII 661126 . T C 4688.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=20.21;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:4688,522,0 chrVII 661173 . G A 3051 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=0;QD=18.38;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3084,330,0 chrVII 661203 . T A 1652 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=4.5549;MLEAC=2;MLEAF=1.00;MQ=33.36;MQ0=0;QD=12.71;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1685,201,0 chrVII 661204 . T C 1641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.7662;MLEAC=2;MLEAF=1.00;MQ=31.50;MQ0=0;MQRankSum=0.782;QD=13.23;ReadPosRankSum=-0.391;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:1674,204,0 chrVII 661248 . G C 395 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=14.3641;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=3.32;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:57:428,57,0 chrVII 661266 . A G 1593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.04;MQ0=0;MQRankSum=-0.095;QD=13.73;ReadPosRankSum=2.407;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:1626,183,0 chrVII 661274 . G A 1634 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=14.46;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1667,180,0 chrVII 661281 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=35.12;MQ0=0;QD=14.34;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1625,171,0 chrVII 661290 . A T 1607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.877;DP=108;Dels=0.00;FS=2.763;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=38.73;MQ0=0;MQRankSum=0.444;QD=14.88;ReadPosRankSum=0.877;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:1640,155,0 chrVII 661343 . A G 1972 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=18.09;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2005,228,0 chrVII 661442 . C G 2145 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=22.58;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2178,246,0 chrVII 661475 . G A 1932 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=15.1085;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=22.21;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1965,216,0 chrVII 661528 . T A 2471 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=24.96;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2504,273,0 chrVII 661561 . C A 2718 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.63;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2751,297,0 chrVII 661628 . C T 2746 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=24.30;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2779,303,0 chrVII 661642 . G A 2478 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.93;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2511,267,0 chrVII 661713 . C G 2259 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.72;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2292,258,0 chrVII 661735 . C T 2921 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.7719;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.82;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2954,315,0 chrVII 661892 . T A 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=120;Dels=0.00;FS=2.874;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.769;QD=22.00;ReadPosRankSum=2.388;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2673,285,0 chrVII 662069 . G A 2438 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.37;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2471,264,0 chrVII 662230 . G A 1574 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1607,171,0 chrVII 662566 . A G 3434.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.9348;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.85;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3434,384,0 chrVII 662796 . G A 2813 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.34;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2846,303,0 chrVII 663030 . T C 2494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.119;QD=22.07;ReadPosRankSum=1.701;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2527,285,0 chrVII 663196 . T C 2439 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2472,276,0 chrVII 663380 . A T 2838 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.27;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2871,309,0 chrVII 663419 . A G 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.878;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.696;QD=24.09;ReadPosRankSum=1.678;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3117,342,0 chrVII 663703 . C G 2333 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.60;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2366,270,0 chrVII 664238 . A G 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.254;DP=129;Dels=0.00;FS=12.668;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.102;QD=21.78;ReadPosRankSum=3.390;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:4,125:129:99:2843,324,0 chrVII 664343 . C T 2780 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2813,309,0 chrVII 664454 . G A 2789 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2822,306,0 chrVII 664700 . C G 2667 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.34;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2700,303,0 chrVII 664982 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=6.973;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.603;QD=22.60;ReadPosRankSum=2.421;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3819,429,0 chrVII 664995 . G A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.89;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3846,405,0 chrVII 665432 . G A 3947.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3947,423,0 chrVII 665747 . G A 2651 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.24;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2684,288,0 chrVII 665893 . A G 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.2708;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=1.197;QD=20.57;ReadPosRankSum=1.704;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2584,288,0 chrVII 665906 . A G 2549 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.07;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2582,291,0 chrVII 666117 . A T 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=79;Dels=0.03;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.832;QD=24.95;ReadPosRankSum=1.687;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:2004,219,0 chrVII 666261 . T A 1928 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.51;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1961,213,0 chrVII 666285 . G A 2049 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8813;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=24.11;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:2082,219,0 chrVII 666448 . T C 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=119;Dels=0.00;FS=3.125;HaplotypeScore=11.0223;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-1.431;QD=21.17;ReadPosRankSum=1.642;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,115:119:99:2552,285,0 chrVII 666496 . A G 2446 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.65;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2479,276,0 chrVII 666526 . T G 2451 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.0411;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.26;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2484,288,0 chrVII 666547 . G A 2246 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.70;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2279,246,0 chrVII 666548 . A G 2150 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=18.86;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2183,246,0 chrVII 666667 . A C 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=154;Dels=0.00;FS=7.691;HaplotypeScore=8.9587;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.445;QD=22.45;ReadPosRankSum=2.320;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:2,150:154:99:3457,390,0 chrVII 666815 . T G 3423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.729;QD=23.61;ReadPosRankSum=1.637;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3423,390,0 chrVII 666829 . T C 3337.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.86;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3337,378,0 chrVII 667659 . T C 2538 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7764;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=18.00;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2571,288,0 chrVII 667672 . G A 2412 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1933;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=17.87;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2445,258,0 chrVII 667714 . C T 2497 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=17.34;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2530,270,0 chrVII 667820 . G A 2480 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=19.53;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2513,273,0 chrVII 667843 . G A 1849 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=18.87;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1882,204,0 chrVII 667927 . G C 2306 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.83;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2339,264,0 chrVII 668268 . C T 3095 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.18;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3128,339,0 chrVII 668294 . C G 2617 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.37;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2650,306,0 chrVII 668528 . C T 3363.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.73;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3363,369,0 chrVII 668593 . C T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=25.24;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3306,348,0 chrVII 668797 . T C 2844 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.22;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2877,330,0 chrVII 668812 . G A 2746 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.80;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2779,303,0 chrVII 669817 . C T 2502 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.4634;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=20.51;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2535,288,0 chrVII 669871 . A G 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.171;QD=21.29;ReadPosRankSum=1.708;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3056,345,0 chrVII 669892 . T C 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=6.269;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.120;QD=21.17;ReadPosRankSum=1.708;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3124,348,0 chrVII 669973 . C T 2368 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=21.53;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2401,255,0 chrVII 669985 . C T 1898 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=19.37;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1931,219,0 chrVII 670056 . C T 1986 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=23.36;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2019,216,0 chrVII 670080 . G C 2303 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=21.52;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2336,270,0 chrVII 670175 . A G 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=83;Dels=0.00;FS=3.174;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-1.433;QD=22.75;ReadPosRankSum=1.647;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1921,213,0 chrVII 670257 . G A 2083 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;QD=22.89;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2116,237,0 chrVII 670263 . A G 1995 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;QD=21.45;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2028,228,0 chrVII 670287 . A G 2081 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;QD=20.01;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2114,234,0 chrVII 670291 . G A 2139 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=21.18;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2172,234,0 chrVII 670307 . A G 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=101;Dels=0.00;FS=2.484;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;MQRankSum=-0.459;QD=16.74;ReadPosRankSum=2.929;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:3,96:101:99:1724,198,0 chrVII 670374 . C T 1891 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.1726;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.35;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1924,213,0 chrVII 670617 . T C 3112 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3145,357,0 chrVII 670910 . C A 4326.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.72;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4326,465,0 chrVII 671000 . G A 3192 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=23.82;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3225,348,0 chrVII 671126 . A G 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=155;Dels=0.00;FS=5.404;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.708;QD=23.87;ReadPosRankSum=2.955;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3700,420,0 chrVII 671206 . T C 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-0.028;QD=22.12;ReadPosRankSum=1.695;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4136,462,0 chrVII 671227 . T C 3900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=188;Dels=0.00;FS=5.805;HaplotypeScore=4.5313;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-0.385;QD=20.74;ReadPosRankSum=2.931;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:3900,438,0 chrVII 671239 . A T 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=189;Dels=0.00;FS=7.720;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-0.318;QD=20.53;ReadPosRankSum=2.320;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:3881,420,0 chrVII 671341 . A G 3481.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.90;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3481,387,0 chrVII 671378 . T C 3799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.370;DP=177;Dels=0.00;FS=9.058;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.690;QD=21.46;ReadPosRankSum=3.370;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:4,173:177:99:3799,423,0 chrVII 671404 . A G 4423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=202;Dels=0.00;FS=3.141;HaplotypeScore=8.0735;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-1.698;QD=21.90;ReadPosRankSum=1.698;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4423,495,0 chrVII 671440 . T C 4489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=210;Dels=0.00;FS=3.137;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-0.366;QD=21.38;ReadPosRankSum=1.665;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:1,207:210:99:4489,507,0 chrVII 671710 . G A 3832.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.01;FS=0.000;HaplotypeScore=15.2730;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.67;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3832,411,0 chrVII 671982 . T G 2221 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.14;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2254,249,0 chrVII 672632 . C T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.7910;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.87;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3532,369,0 chrVII 672695 . G A 4619.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.93;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4619,495,0 chrVII 672758 . C T 5125.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.5186;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=24.17;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5125,555,0 chrVII 672921 . G A 4704.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4704,504,0 chrVII 672998 . C T 2789 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.79;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2822,309,0 chrVII 673076 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.31;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3334,375,0 chrVII 673220 . G A 3838.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.93;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3838,414,0 chrVII 673619 . G A 5216.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.78;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5216,553,0 chrVII 673804 . G A 3922.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3922,423,0 chrVII 674123 . G A 3961.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.88;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3961,423,0 chrVII 674153 . C A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.7952;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.76;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3596,393,0 chrVII 674753 . C T 5060.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.5491;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.87;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5060,543,0 chrVII 674880 . T C 4086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=194;Dels=0.00;FS=2.578;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-0.601;QD=21.06;ReadPosRankSum=2.954;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:4086,459,0 chrVII 674888 . T C 3796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.5034;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.071;QD=19.47;ReadPosRankSum=1.696;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:3796,423,0 chrVII 675230 . C T 4460.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.7967;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.64;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4460,480,0 chrVII 675399 . A G 1132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=-1.259;QD=12.44;ReadPosRankSum=2.396;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1165,135,0 chrVII 675404 . G A 1271 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=14.12;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1304,138,0 chrVII 675419 . T C 1375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=1.046;QD=13.61;ReadPosRankSum=0.943;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1408,159,0 chrVII 675578 . T C 333 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=15.86;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:42:366,42,0 chrVII 675590 . G A 346 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.15;MQ0=0;QD=15.04;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:42:379,42,0 chrVII 675599 . C T 408 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=17.74;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:48:441,48,0 chrVII 675606 . C T 408 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=14.07;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:48:441,48,0 chrVII 675625 . C T 802 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=19.10;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,41:42:90:835,90,0 chrVII 675850 . G A 4803.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.0836;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=24.76;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4803,513,0 chrVII 676417 . A T 2339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.8034;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.133;QD=20.52;ReadPosRankSum=2.363;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2372,252,0 chrVII 676455 . C T 2681 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=8.1553;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.57;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2714,303,0 chrVII 676517 . G A 2554 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.8487;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=20.76;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2587,279,0 chrVII 676617 . T C 3842.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.72;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3842,435,0 chrVII 676840 . T G 4375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=189;Dels=0.00;FS=7.787;HaplotypeScore=11.9247;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.124;QD=23.15;ReadPosRankSum=2.371;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4375,492,0 chrVII 676875 . G A 4340.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.84;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4340,477,0 chrVII 677012 . A G 3519.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.56;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3519,396,0 chrVII 677217 . C A 3091 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.92;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3124,339,0 chrVII 677274 . T C 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=3.010;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.457;QD=21.13;ReadPosRankSum=2.388;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2548,294,0 chrVII 677364 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2749,309,0 chrVII 677637 . A G 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=3.917;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.979;QD=20.60;ReadPosRankSum=1.707;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2897,339,0 chrVII 677807 . G C 3659.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=20.9035;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.91;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3659,420,0 chrVII 678099 . C T 530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=66;Dels=0.00;FS=18.544;HaplotypeScore=70.9616;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;MQRankSum=2.199;QD=8.03;ReadPosRankSum=2.708;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:5,59:66:63:563,63,0 chrVII 678262 . G T 1979 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=23.56;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2012,213,0 chrVII 678352 . C T 2721 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.60;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2754,300,0 chrVII 678429 . C T 3560.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=26.18;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3560,375,0 chrVII 678516 . T C 3697.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.40;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3697,420,0 chrVII 678750 . A G 4350.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=19.00;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4350,492,0 chrVII 678760 . C A 4654.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.80;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4654,496,0 chrVII 678853 . T C 5161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=258;Dels=0.00;FS=4.082;HaplotypeScore=11.9294;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.041;QD=20.00;ReadPosRankSum=1.719;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:1,255:258:99:5161,597,0 chrVII 678864 . T C 5872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=272;Dels=0.00;FS=3.939;HaplotypeScore=11.6947;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-1.129;QD=21.59;ReadPosRankSum=1.719;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:1,269:272:99:5872,654,0 chrVII 679078 . G T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.6433;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.63;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4005,441,0 chrVII 679471 . C T 3360.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.4768;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.24;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3360,375,0 chrVII 679705 . T C 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-1.659;QD=21.51;ReadPosRankSum=1.684;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3131,351,0 chrVII 679731 . C A 2683 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=20.80;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2716,294,0 chrVII 679750 . A G 2169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=119;Dels=0.00;FS=3.432;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=0.509;QD=18.23;ReadPosRankSum=1.674;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2202,249,0 chrVII 679768 . T C 2381 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.90;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2414,273,0 chrVII 679819 . C T 2912 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.89;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2945,321,0 chrVII 680113 . C T 3348.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3348,357,0 chrVII 680353 . C T 5071.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.5992;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.98;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:5071,552,0 chrVII 680509 . C T 4509.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.2830;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.21;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4509,507,0 chrVII 680542 . T C 4231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.8637;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.677;QD=22.39;ReadPosRankSum=1.364;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4231,474,0 chrVII 680587 . A C 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=155;Dels=0.00;FS=5.928;HaplotypeScore=15.7144;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.961;QD=22.60;ReadPosRankSum=2.170;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:3,151:155:99:3503,387,0 chrVII 680745 . A G 3151 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.83;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3184,351,0 chrVII 680773 . T C 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=143;Dels=0.00;FS=3.034;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.378;QD=21.66;ReadPosRankSum=2.397;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:2,138:143:99:3130,351,0 chrVII 681013 . G A 4533.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.89;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4533,489,0 chrVII 681411 . T C 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=157;Dels=0.01;FS=3.096;HaplotypeScore=3.7006;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.532;QD=19.59;ReadPosRankSum=1.709;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,152:156:99:3109,348,0 chrVII 681415 . C T 3051 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=20.21;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3084,327,0 chrVII 681502 . T C 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=15.9170;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.049;QD=21.84;ReadPosRankSum=1.683;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3178,360,0 chrVII 681622 . T A 5069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.236;QD=23.47;ReadPosRankSum=1.716;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:5069,567,0 chrVII 681706 . C T 4280.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.4751;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.84;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4280,462,0 chrVII 681775 . C T 4961.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.30;SB=-3.304e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:4961,532,0 chrVII 682208 . T C 2544 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.20;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2577,285,0 chrVII 682309 . C T 1946 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.8350;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.46;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1979,213,0 chrVII 682324 . G T 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.3343;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=0.875;QD=20.28;ReadPosRankSum=1.062;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,92:95:99:1960,210,0 chrVII 682394 . C T 2229 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.85;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2262,252,0 chrVII 682466 . T C 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=118;Dels=0.00;FS=2.986;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.282;QD=22.36;ReadPosRankSum=2.408;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2672,294,0 chrVII 682488 . A T 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=3.810;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-0.199;QD=21.38;ReadPosRankSum=1.701;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2470,270,0 chrVII 682525 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.62;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2567,270,0 chrVII 682549 . G A 2223 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.23;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2256,243,0 chrVII 682640 . C T 2675 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.57;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2708,291,0 chrVII 682848 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=3.105;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.511;QD=23.19;ReadPosRankSum=1.632;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3256,363,0 chrVII 683391 . A T 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.062;QD=22.26;ReadPosRankSum=1.682;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3127,333,0 chrVII 683478 . G A 2418 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.0939;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.25;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2451,258,0 chrVII 683669 . A G 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=144;Dels=0.00;FS=5.643;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.787;QD=24.61;ReadPosRankSum=1.708;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3544,393,0 chrVII 684022 . A G 3480.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.75;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3480,393,0 chrVII 684041 . G A 3403.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.80;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3403,357,0 chrVII 684165 . A G 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.174;QD=22.58;ReadPosRankSum=1.615;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2743,312,0 chrVII 684595 . A G 3760.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7681;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=22.93;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3760,417,0 chrVII 684623 . G T 3124 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=20.15;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3157,348,0 chrVII 684644 . G A 2590 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=17.50;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2623,282,0 chrVII 684645 . G A 2626 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=17.74;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:2659,282,0 chrVII 684687 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=18.18;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3032,324,0 chrVII 684706 . T G 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.756;QD=18.63;ReadPosRankSum=1.713;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3391,381,0 chrVII 685328 . T A 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.585;QD=24.27;ReadPosRankSum=1.673;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2945,315,0 chrVII 685491 . C T 3136 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3169,339,0 chrVII 685720 . G T 2954 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2987,321,0 chrVII 685949 . G A 3114 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.91;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3147,336,0 chrVII 686099 . A T 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=96;Dels=0.00;FS=3.039;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.115;QD=22.92;ReadPosRankSum=2.373;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2233,240,0 chrVII 686391 . T C 2743 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.12;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2776,318,0 chrVII 686412 . T C 2479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-0.057;QD=20.15;ReadPosRankSum=1.647;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2512,282,0 chrVII 686463 . G A 2839 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.53;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2872,309,0 chrVII 686708 . C T 2197 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.88;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2230,240,0 chrVII 686859 . T C 1850 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1883,213,0 chrVII 686917 . T C 2716 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.04;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2749,309,0 chrVII 687222 . A G 3699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=163;Dels=0.00;FS=6.061;HaplotypeScore=6.6731;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.327;QD=22.69;ReadPosRankSum=2.735;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3699,420,0 chrVII 687575 . G A 4115.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=17.5392;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.51;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4115,453,0 chrVII 687656 . C T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.14;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3331,366,0 chrVII 687814 . A G 4356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=201;Dels=0.00;FS=7.115;HaplotypeScore=16.7056;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.302;QD=21.67;ReadPosRankSum=2.400;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:2,197:201:99:4356,486,0 chrVII 688371 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2670,285,0 chrVII 688494 . T C 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=117;Dels=0.00;FS=3.439;HaplotypeScore=13.9600;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.252;QD=21.03;ReadPosRankSum=1.703;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2493,276,0 chrVII 688726 . C T 5221.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.0944;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.17;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5221,576,0 chrVII 689170 . G T 2957 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.07;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2990,330,0 chrVII 689389 . G A 3989.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.60;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3989,432,0 chrVII 689420 . A G 4071.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.81;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4071,450,0 chrVII 689452 . G A 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.904;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-1.261;QD=18.00;ReadPosRankSum=-0.226;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3312,346,0 chrVII 689454 . A G 3215 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=17.76;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3248,369,0 chrVII 689803 . C T 3910.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.9564;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=23.70;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3910,420,0 chrVII 689812 . A G 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=152;Dels=0.00;FS=3.038;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-0.881;QD=21.00;ReadPosRankSum=2.385;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3225,372,0 chrVII 689896 . C T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.47;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3755,408,0 chrVII 689948 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=154;Dels=0.00;FS=4.393;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.270;QD=21.30;ReadPosRankSum=1.710;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3280,366,0 chrVII 690035 . G A 3087 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=20.72;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3120,336,0 chrVII 690039 . G C 2884 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.23;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:2917,327,0 chrVII 690131 . C T 2962 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=119.8008;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=21.46;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2995,321,0 chrVII 690160 . A T 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=3.364;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-1.624;QD=20.72;ReadPosRankSum=1.705;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2685,288,0 chrVII 690262 . T C 3323.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.08;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3323,372,0 chrVII 690379 . A G 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=1.496;QD=22.46;ReadPosRankSum=1.706;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2998,336,0 chrVII 690505 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.114;QD=23.60;ReadPosRankSum=1.707;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3267,363,0 chrVII 690685 . G A 3382.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=25.05;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3382,363,0 chrVII 690847 . G A 4150.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.2611;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=25.46;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4150,444,0 chrVII 690870 . T A 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=156;Dels=0.00;FS=2.918;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.339;QD=25.09;ReadPosRankSum=2.418;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3914,409,0 chrVII 690893 . C T 3661.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.41;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3661,390,0 chrVII 691114 . G A 4321.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.41;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4321,459,0 chrVII 691370 . C A 3557.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3557,387,0 chrVII 691567 . A G 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=3.846;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.559;QD=22.68;ReadPosRankSum=1.689;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3628,411,0 chrVII 691606 . C G 3320.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3320,387,0 chrVII 692182 . T C 3999.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.4462;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.34;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,174:179:99:3999,444,0 chrVII 692206 . C T 4249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.4576;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.436;QD=24.42;ReadPosRankSum=1.367;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:4249,450,0 chrVII 692371 . T C 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=173;Dels=0.00;FS=3.868;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.131;QD=23.03;ReadPosRankSum=1.692;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3985,450,0 chrVII 692729 . G A 4275.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4275,477,0 chrVII 692857 . T C 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=3.206;HaplotypeScore=5.1246;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=0.839;QD=18.85;ReadPosRankSum=1.667;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3030,351,0 chrVII 692867 . A G 2807 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=18.59;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2840,321,0 chrVII 693126 . T C 3109 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.53;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3142,354,0 chrVII 693366 . T C 2790 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8525;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.63;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2823,315,0 chrVII 693386 . G A 2306 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=19.71;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2339,258,0 chrVII 693678 . C T 4135.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.3340;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.18;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4135,447,0 chrVII 693950 . C T 4731.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4731,505,0 chrVII 694504 . T C 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.9198;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.566;QD=23.20;ReadPosRankSum=2.385;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3550,396,0 chrVII 694539 . C T 3634.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.2730;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.91;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3634,393,0 chrVII 694611 . T C 4216.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.7285;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.95;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4216,474,0 chrVII 694685 . G A 4592.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.43;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4592,492,0 chrVII 694726 . T G 4115.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.99;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4115,477,0 chrVII 694954 . G A 4061.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.7333;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.81;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4061,441,0 chrVII 695091 . C T 3717.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.45;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3717,393,0 chrVII 695201 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.49;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3228,345,0 chrVII 695230 . T A 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=5.258;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.264;QD=24.00;ReadPosRankSum=1.686;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3624,384,0 chrVII 695464 . T A 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.379;QD=24.32;ReadPosRankSum=1.661;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2441,273,0 chrVII 696190 . T C 3403.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3403,384,0 chrVII 696994 . T C 4130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=196;Dels=0.00;FS=12.474;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.094;QD=21.07;ReadPosRankSum=2.399;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4130,480,0 chrVII 697071 . A G 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.396;QD=20.67;ReadPosRankSum=1.669;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3431,393,0 chrVII 697514 . A G 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.903;QD=20.89;ReadPosRankSum=1.683;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3020,345,0 chrVII 697547 . G A 2616 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.12;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2649,288,0 chrVII 697548 . G A 2698 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.08;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2731,291,0 chrVII 697829 . A G 5151.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.76;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5151,573,0 chrVII 697892 . C T 5289.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.2153;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.37;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5289,562,0 chrVII 698057 . C T 4276.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.27;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4276,474,0 chrVII 698120 . C T 3167 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.40;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3200,342,0 chrVII 698252 . A G 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=3.006;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=1.659;QD=22.58;ReadPosRankSum=2.359;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2494,285,0 chrVII 698376 . T C 2565 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.02;FS=0.000;HaplotypeScore=8.5981;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.02;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2598,288,0 chrVII 698504 . A G 1770 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=100;Dels=0.00;FS=11.739;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;MQRankSum=-1.554;QD=17.70;ReadPosRankSum=2.400;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1803,201,0 chrVII 698507 . T A 1801 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=18.76;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1834,195,0 chrVII 698512 . C T 1683 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=17.35;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1716,183,0 chrVII 698531 . A G 1809 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=16.60;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1842,210,0 chrVII 699232 . T C 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.748;QD=22.41;ReadPosRankSum=1.689;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3631,405,0 chrVII 699298 . C T 3936.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.4027;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.43;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3936,423,0 chrVII 699348 . C T 4192.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.7721;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.95;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4192,439,0 chrVII 699490 . G C 4793.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.1149;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.61;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,199:203:99:4793,531,0 chrVII 699971 . C A 2066 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.62;MQ0=0;QD=20.25;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2099,228,0 chrVII 700028 . T C 1119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.485;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=1.135;QD=12.72;ReadPosRankSum=1.692;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1152,135,0 chrVII 700436 . T C 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=124;Dels=0.00;FS=6.722;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=-0.990;QD=21.77;ReadPosRankSum=2.310;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2732,303,0 chrVII 700532 . A T 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=0.226;QD=23.90;ReadPosRankSum=1.702;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2782,303,0 chrVII 700554 . G A 2708 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=22.02;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2741,291,0 chrVII 700580 . G C 2108 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;QD=19.16;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2141,240,0 chrVII 700611 . T C 1676 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.5285;MLEAC=2;MLEAF=1.00;MQ=30.34;MQ0=0;MQRankSum=-1.732;QD=16.12;ReadPosRankSum=1.632;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1709,186,0 chrVII 700613 . A C 1640 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.5285;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;MQRankSum=-1.698;QD=15.92;ReadPosRankSum=1.665;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1673,189,0 chrVII 700617 . G A 1620 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.46;MQ0=0;QD=15.73;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1653,180,0 chrVII 700627 . C T 1717 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.91;MQ0=0;QD=15.75;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1750,183,0 chrVII 700641 . C A 1671 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.01;MQ0=0;QD=15.33;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1704,183,0 chrVII 700652 . T A 1745 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.94;MQ0=0;QD=14.91;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1778,192,0 chrVII 700660 . C T 1686 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;QD=14.17;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1719,183,0 chrVII 700775 . G A 2210 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=21.88;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2243,243,0 chrVII 701087 . G C 1886 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=22.45;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1919,213,0 chrVII 701229 . A T 1089 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=34.42;MQ0=0;MQRankSum=-0.069;QD=20.17;ReadPosRankSum=1.443;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1122,123,0 chrVII 701232 . C T 998 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=51;Dels=0.00;FS=13.979;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;MQRankSum=-1.317;QD=19.57;ReadPosRankSum=1.317;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,49:51:91:1031,91,0 chrVII 701313 . T A 333.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=49.93;MQ0=0;MQRankSum=0.887;QD=11.89;ReadPosRankSum=1.273;SB=-2.799e+01 GT:AD:DP:GQ:PL 0/1:3,25:28:41:363,0,41 chrVII 701385 . A G 1134 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.00;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,51:54:99:1167,129,0 chrVII 701596 . G A 4757.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.8024;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=25.17;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4757,516,0 chrVII 701914 . T A 4229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=4.206;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.750;QD=22.49;ReadPosRankSum=1.695;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4229,456,0 chrVII 702018 . C T 2706 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=17.3107;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.74;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2739,300,0 chrVII 702078 . C G 2410 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.08;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2443,273,0 chrVII 702109 . A G 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=133;Dels=0.00;FS=2.994;HaplotypeScore=14.0415;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=0.214;QD=21.02;ReadPosRankSum=2.412;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2828,315,0 chrVII 702168 . C A 3466.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.11;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3466,363,0 chrVII 702626 . T C 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.2794;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.367;QD=22.01;ReadPosRankSum=1.702;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2564,294,0 chrVII 702776 . C T 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=133;Dels=0.00;FS=4.078;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;MQRankSum=-1.706;QD=17.41;ReadPosRankSum=-0.378;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2349,258,0 chrVII 702790 . A C 2034 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=15.65;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2067,234,0 chrVII 702791 . C T 2098 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=16.02;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2131,243,0 chrVII 702821 . T C 2843 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=18.46;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2876,333,0 chrVII 703087 . T A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.13;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3795,399,0 chrVII 703157 . G A 4388.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.28;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4388,463,0 chrVII 703431 . C T 3817.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.16;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3817,411,0 chrVII 703454 . T C 2972 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.01;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3005,336,0 chrVII 703857 . T G 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.173;QD=23.19;ReadPosRankSum=0.736;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3734,417,0 chrVII 704328 . C T 3467.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3467,375,0 chrVII 704949 . A G 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.210;QD=22.63;ReadPosRankSum=1.705;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2884,321,0 chrVII 705215 . C T 152.06 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=50.8389;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=2.27;SB=-7.851e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:21:185,21,0 chrVII 705242 . A G 1424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=73;Dels=0.00;FS=4.260;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.481;QD=19.51;ReadPosRankSum=1.684;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1457,162,0 chrVII 705827 . G A 2417 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2450,267,0 chrVII 706609 . A G 2740 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.68;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2773,309,0 chrVII 706722 . T C 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=137;Dels=0.00;FS=2.907;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.726;QD=24.34;ReadPosRankSum=2.395;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:3335,378,0 chrVII 707026 . C T 965 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=21.44;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:998,111,0 chrVII 707062 . T C 191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=45;Dels=0.04;FS=13.994;HaplotypeScore=15.9086;MLEAC=2;MLEAF=1.00;MQ=43.34;MQ0=0;MQRankSum=0.836;QD=4.24;ReadPosRankSum=2.336;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:2,41:43:27:224,27,0 chrVII 707182 . G A 997 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=12.4289;MLEAC=2;MLEAF=1.00;MQ=38.28;MQ0=0;QD=15.58;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:99:1030,114,0 chrVII 707993 . G A 2776 filter AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=5.9025;MLEAC=2;MLEAF=1.00;MQ=16.63;MQ0=65;QD=10.72;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,256:259:99:2809,318,0 chrVII 708297 . G A 5417.01 filter AC=2;AF=1.00;AN=2;DP=603;Dels=0.00;FS=0.000;HaplotypeScore=20.4523;MLEAC=2;MLEAF=1.00;MQ=18.87;MQ0=161;QD=8.98;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,601:603:99:5417,627,0 chrVII 708379 . C A 1972.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.423;DP=563;Dels=0.00;FS=6.809;HaplotypeScore=14.6168;MLEAC=1;MLEAF=0.500;MQ=22.75;MQ0=113;MQRankSum=-1.800;QD=3.50;ReadPosRankSum=-1.301;SB=-8.090e+02 GT:AD:DP:GQ:PL 0/1:283,280:563:99:2002,0,2409 chrVII 708380 . T C 5420.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.767;DP=557;Dels=0.00;FS=7.104;HaplotypeScore=15.9527;MLEAC=2;MLEAF=1.00;MQ=22.36;MQ0=114;MQRankSum=-1.109;QD=9.73;ReadPosRankSum=1.621;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:3,545:557:99:5420,618,0 chrVII 708405 . C T 2367 filter AC=2;AF=1.00;AN=2;DP=409;Dels=0.00;FS=0.000;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=14.17;MQ0=177;QD=5.79;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,406:409:99:2400,270,0 chrVII 708553 . G A 2090.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.609;DP=711;Dels=0.00;FS=1.903;HaplotypeScore=60.5864;MLEAC=1;MLEAF=0.500;MQ=27.69;MQ0=64;MQRankSum=-0.816;QD=2.94;ReadPosRankSum=0.805;SB=-8.300e+02 GT:AD:DP:GQ:PL 0/1:521,186:711:99:2120,0,7789 chrVII 708677 . T C 1431 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=409;Dels=0.00;FS=7.991;HaplotypeScore=10.7800;MLEAC=2;MLEAF=1.00;MQ=11.94;MQ0=239;MQRankSum=-1.263;QD=3.50;ReadPosRankSum=1.630;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:5,401:409:99:1464,168,0 chrVII 709158 . G C 1034.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.658;DP=997;DS;Dels=0.00;FS=7.843;HaplotypeScore=55.1322;MLEAC=1;MLEAF=0.500;MQ=16.09;MQ0=384;MQRankSum=1.848;QD=1.04;ReadPosRankSum=-1.336;SB=-1.310e+02 GT:AD:DP:GQ:PL 0/1:734,250:997:99:1064,0,4579 chrVII 709221 . T C 8896.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=850;DS;Dels=0.00;FS=2.543;HaplotypeScore=14.7377;MLEAC=2;MLEAF=1.00;MQ=20.54;MQ0=209;MQRankSum=-0.119;QD=10.47;ReadPosRankSum=2.930;SB=-4.731e+03 GT:AD:DP:GQ:PL 1/1:4,842:850:99:8896,1005,0 chrVII 709235 . C A 8022.01 filter AC=2;AF=1.00;AN=2;DP=744;DS;Dels=0.00;FS=0.000;HaplotypeScore=8.0336;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=196;QD=10.78;SB=-4.413e+03 GT:AD:DP:GQ:PL 1/1:0,744:744:99:8022,888,0 chrVII 709464 . A G 6712.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.556;DP=530;Dels=0.00;FS=30.870;HaplotypeScore=37.1712;MLEAC=2;MLEAF=1.00;MQ=20.72;MQ0=146;MQRankSum=-0.404;QD=12.66;ReadPosRankSum=4.814;SB=-2.890e+03 GT:AD:DP:GQ:PL 1/1:8,517:530:99:6712,768,0 chrVII 709471 . G C 1421.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;DP=509;Dels=0.00;FS=84.328;HaplotypeScore=13.5655;MLEAC=1;MLEAF=0.500;MQ=19.47;MQ0=179;MQRankSum=-2.177;QD=2.79;ReadPosRankSum=0.644;SB=-2.160e+02 GT:AD:DP:GQ:PL 0/1:297,202:509:99:1451,0,2775 chrVII 709503 . T C 1077 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.934;DP=433;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=14.28;MQ0=326;MQRankSum=-3.498;QD=2.49;ReadPosRankSum=4.934;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:9,420:433:99:1110,126,0 chrVII 709566 . C T 5511.01 filter AC=2;AF=1.00;AN=2;DP=766;Dels=0.00;FS=0.000;HaplotypeScore=19.8049;MLEAC=2;MLEAF=1.00;MQ=17.51;MQ0=229;QD=7.19;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:0,763:766:99:5511,615,0 chrVII 709659 . C G 3559.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.463;DP=775;Dels=0.00;FS=1.944;HaplotypeScore=61.1579;MLEAC=1;MLEAF=0.500;MQ=23.99;MQ0=87;MQRankSum=-0.252;QD=4.59;ReadPosRankSum=0.162;SB=-1.768e+03 GT:AD:DP:GQ:PL 0/1:361,402:775:99:3559,0,3257 chrVII 709683 . C T 4577.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=14.063;DP=754;Dels=0.00;FS=2.355;HaplotypeScore=26.7807;MLEAC=1;MLEAF=0.500;MQ=27.41;MQ0=54;MQRankSum=-0.816;QD=6.07;ReadPosRankSum=-1.666;SB=-1.715e+03 GT:AD:DP:GQ:PL 0/1:377,372:754:99:4577,0,4682 chrVII 709707 . A G 14524.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=779;Dels=0.00;FS=3.630;HaplotypeScore=27.1125;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=25;MQRankSum=0.861;QD=18.64;ReadPosRankSum=1.704;SB=-7.034e+03 GT:AD:DP:GQ:PL 1/1:1,776:779:99:14524,1623,0 chrVII 710949 . T C 2138 filter AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=6.4892;MLEAC=2;MLEAF=1.00;MQ=16.72;MQ0=217;QD=6.60;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:2,314:324:99:2171,246,0 chrVII 710988 . C T 926 filter AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=2.2312;MLEAC=2;MLEAF=1.00;MQ=11.46;MQ0=224;QD=3.49;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,264:265:99:959,102,0 chrVII 710997 . A G 93.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.281;DP=230;Dels=0.00;FS=40.584;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=7.00;MQ0=214;MQRankSum=3.281;QD=0.41;ReadPosRankSum=3.281;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:7,223:230:15:126,15,0 chrVII 711087 . A G 231 filter AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.38;MQ0=130;QD=1.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,141:141:30:264,30,0 chrVII 711099 . T C 478 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=143;Dels=0.00;FS=26.675;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.89;MQ0=112;MQRankSum=-1.327;QD=3.34;ReadPosRankSum=2.131;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:2,141:143:57:511,57,0 chrVII 711171 . G A 1065.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.786;DP=530;Dels=0.00;FS=47.360;HaplotypeScore=42.3152;MLEAC=1;MLEAF=0.500;MQ=32.64;MQ0=166;MQRankSum=0.896;QD=2.01;ReadPosRankSum=-2.827;SB=-5.990e+02 GT:AD:DP:GQ:PL 0/1:395,130:530:99:1095,0,5155 chrVII 711348 . T C 4433.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.419;DP=298;Dels=0.00;FS=20.117;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=24.33;MQ0=88;MQRankSum=1.508;QD=14.88;ReadPosRankSum=3.136;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:4,294:298:99:4433,492,0 chrVII 711526 . T C 12352.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.643;DP=591;Dels=0.00;FS=34.357;HaplotypeScore=49.8576;MLEAC=2;MLEAF=1.00;MQ=34.68;MQ0=24;MQRankSum=4.065;QD=20.90;ReadPosRankSum=1.057;SB=-4.678e+03 GT:AD:DP:GQ:PL 1/1:41,541:591:99:12352,1167,0 chrVII 711738 . T C 10625.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.731;DP=627;Dels=0.00;FS=15.566;HaplotypeScore=40.2110;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=66;MQRankSum=1.534;QD=16.95;ReadPosRankSum=3.834;SB=-5.524e+03 GT:AD:DP:GQ:PL 1/1:5,618:627:99:10625,1209,0 chrVII 711852 . C T 1883 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.472;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=24.26;MQ0=127;MQRankSum=-1.260;QD=8.76;ReadPosRankSum=0.157;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:1,214:215:99:1916,197,0 chrVII 711884 . A G 2158.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.762;DP=344;Dels=0.00;FS=8.946;HaplotypeScore=19.1312;MLEAC=1;MLEAF=0.500;MQ=37.97;MQ0=89;MQRankSum=-0.085;QD=6.27;ReadPosRankSum=-2.156;SB=-9.140e+02 GT:AD:DP:GQ:PL 0/1:168,175:344:99:2188,0,2601 chrVII 712143 . A G 1322.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.347;DP=624;Dels=0.00;FS=4.149;HaplotypeScore=17.3747;MLEAC=1;MLEAF=0.500;MQ=30.58;MQ0=140;MQRankSum=-0.392;QD=2.12;ReadPosRankSum=3.406;SB=-5.130e+02 GT:AD:DP:GQ:PL 0/1:474,149:624:99:1352,0,6408 chrVII 712282 . C T 256.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.152;DP=450;Dels=0.00;FS=0.000;HaplotypeScore=17.4564;MLEAC=1;MLEAF=0.500;MQ=16.87;MQ0=77;MQRankSum=-3.240;QD=0.57;ReadPosRankSum=0.100;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:342,108:450:99:286,0,1272 chrVII 712545 . A T 10.50 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=2.3983;MLEAC=1;MLEAF=0.500;MQ=14.14;MQ0=8;MQRankSum=1.026;QD=0.87;ReadPosRankSum=-1.026;SB=-1.335e+00 GT:AD:DP:GQ:PL 0/1:10,2:12:14:40,0,14 chrVII 712564 . G A 577 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.13;MQ0=0;QD=9.95;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:69:610,69,0 chrVII 712615 . T C 2170 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=21.07;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2203,246,0 chrVII 712668 . G A 2408 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=18.38;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2441,276,0 chrVII 712676 . A G 2279 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=17.67;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2312,258,0 chrVII 712716 . T C 1810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;MQRankSum=-0.835;QD=16.16;ReadPosRankSum=1.547;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1843,213,0 chrVII 712739 . C T 1952 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;QD=17.43;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1985,216,0 chrVII 712761 . C T 2269 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;QD=19.07;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2302,249,0 chrVII 712764 . T C 2131 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=18.06;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2164,246,0 chrVII 712818 . A G 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=139;Dels=0.00;FS=3.034;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=-0.864;QD=18.35;ReadPosRankSum=2.307;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2584,297,0 chrVII 712838 . T C 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=3.445;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=0.220;QD=20.25;ReadPosRankSum=1.677;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2625,294,0 chrVII 713046 . T C 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=105;Dels=0.00;FS=3.095;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.866;QD=20.76;ReadPosRankSum=1.699;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2213,243,0 chrVII 713112 . A T 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=127;Dels=0.00;FS=3.726;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.427;QD=23.42;ReadPosRankSum=1.621;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3007,318,0 chrVII 713260 . T A 2729 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.2419;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.01;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2762,309,0 chrVII 713420 . G A 3398.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.60;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3398,366,0 chrVII 713518 . T C 2987 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3020,336,0 chrVII 713616 . A T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.7304;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=25.50;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3647,396,0 chrVII 713643 . G A 3859.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=23.67;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3859,417,0 chrVII 713658 . A G 3670.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.7912;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.72;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3670,414,0 chrVII 713741 . A T 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=130;Dels=0.00;FS=10.772;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.836;QD=23.17;ReadPosRankSum=2.899;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:3045,330,0 chrVII 713781 . T C 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.453;QD=23.27;ReadPosRankSum=1.709;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3490,390,0 chrVII 714275 . G A 3158 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.40;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3191,342,0 chrVII 714581 . G A 3627.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.3889;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.18;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3627,396,0 chrVII 714734 . A G 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=150;Dels=0.00;FS=2.969;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.074;QD=19.91;ReadPosRankSum=2.417;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3019,336,0 chrVII 714740 . T A 3132 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=20.74;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3165,339,0 chrVII 714794 . A T 3474.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.85;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3474,372,0 chrVII 714842 . G A 2527 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.90;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2560,270,0 chrVII 715022 . T C 2269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=107;Dels=0.00;FS=3.053;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=0.252;QD=21.21;ReadPosRankSum=1.665;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,102:107:99:2302,258,0 chrVII 715094 . A G 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.261;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=0.845;QD=22.33;ReadPosRankSum=1.649;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2846,333,0 chrVII 715153 . G T 2668 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.82;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2701,288,0 chrVII 715187 . A G 2452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.998;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-1.027;QD=22.29;ReadPosRankSum=1.840;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2485,263,0 chrVII 715250 . T C 2186 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=20.62;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2219,246,0 chrVII 715267 . G A 2091 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=19.36;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2124,231,0 chrVII 715286 . G A 1902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.131;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;MQRankSum=-0.212;QD=19.41;ReadPosRankSum=1.626;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1935,185,0 chrVII 715298 . T C 1744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=4.546;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;MQRankSum=-0.111;QD=18.55;ReadPosRankSum=1.695;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1777,195,0 chrVII 715306 . T G 1628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=4.393;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;MQRankSum=-1.382;QD=16.44;ReadPosRankSum=1.697;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1661,192,0 chrVII 715330 . T G 1848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=102;Dels=0.00;FS=9.288;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;MQRankSum=0.353;QD=18.12;ReadPosRankSum=2.352;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:2,99:102:99:1881,213,0 chrVII 715381 . T G 2479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-0.329;QD=21.19;ReadPosRankSum=1.702;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2512,279,0 chrVII 715404 . C T 2424 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.02;FS=0.000;HaplotypeScore=8.6449;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.45;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2457,267,0 chrVII 715444 . T C 2095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;MQRankSum=-1.219;QD=19.40;ReadPosRankSum=1.700;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2128,240,0 chrVII 715450 . T A 2019 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=19.41;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2052,228,0 chrVII 715510 . C T 1479 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=17.82;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1512,168,0 chrVII 715532 . T C 1392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=88;Dels=0.00;FS=2.949;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;MQRankSum=-0.210;QD=15.82;ReadPosRankSum=2.338;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1425,162,0 chrVII 715538 . T C 1579 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=16.98;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1612,183,0 chrVII 715580 . G T 1967 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=17.25;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2000,225,0 chrVII 715586 . C G 1861 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=16.32;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:1894,213,0 chrVII 715639 . C T 2360 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.19;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2393,258,0 chrVII 715664 . T C 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-0.797;QD=22.00;ReadPosRankSum=1.707;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3069,342,0 chrVII 715757 . G A 2942 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.3894;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=20.57;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2975,321,0 chrVII 715781 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=19.44;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2871,312,0 chrVII 715785 . T C 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;MQRankSum=-0.617;QD=18.15;ReadPosRankSum=1.590;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2683,312,0 chrVII 715893 . A G 3897.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=24.21;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3897,435,0 chrVII 716403 . C T 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.9185;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.835;QD=22.20;ReadPosRankSum=1.223;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3819,420,0 chrVII 716420 . A T 4409.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=23.58;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4409,483,0 chrVII 716490 . G A 4502.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.2088;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.60;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4502,483,0 chrVII 716562 . G A 3429.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.4275;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.98;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3429,366,0 chrVII 716648 . A G 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=130;Dels=0.00;FS=2.871;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-0.047;QD=20.64;ReadPosRankSum=2.393;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2716,306,0 chrVII 716659 . A G 2698 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.91;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2731,309,0 chrVII 716827 . C A 2920 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.33;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2953,312,0 chrVII 716964 . T C 2791 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.15;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2824,315,0 chrVII 717036 . A G 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.585;HaplotypeScore=8.4203;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.360;QD=22.62;ReadPosRankSum=1.703;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2770,309,0 chrVII 717207 . C T 2970 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.50;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:3003,324,0 chrVII 717272 . T A 4177.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.34;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4177,450,0 chrVII 717332 . T C 3949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=175;Dels=0.00;FS=3.015;HaplotypeScore=8.8315;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.445;QD=22.57;ReadPosRankSum=2.379;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:3949,444,0 chrVII 717846 . G A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.0545;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.96;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3788,411,0 chrVII 718302 . T C 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=207;Dels=0.00;FS=4.541;HaplotypeScore=16.1645;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;MQRankSum=-1.595;QD=19.30;ReadPosRankSum=1.629;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,201:207:99:3996,470,0 chrVII 718326 . C T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;QD=17.88;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,180:184:99:3289,378,0 chrVII 718332 . A G 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=166;Dels=0.00;FS=2.812;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;MQRankSum=-1.636;QD=17.33;ReadPosRankSum=2.420;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:2909,342,0 chrVII 718358 . C T 3056 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.9700;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;QD=17.98;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3089,345,0 chrVII 718558 . C T 4871.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=24.85;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4871,522,0 chrVII 718585 . G A 5092.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.94;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5092,552,0 chrVII 718657 . T C 5706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=12.0648;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.186;QD=23.48;ReadPosRankSum=1.703;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:1,240:243:99:5706,630,0 chrVII 718717 . G C 6098.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=14.8698;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.36;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:0,259:261:99:6098,675,0 chrVII 718778 . G A 6204.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=5.8482;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=22.81;SB=-3.096e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:6204,676,0 chrVII 718805 . T C 6197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;MQRankSum=-0.402;QD=22.29;ReadPosRankSum=1.682;SB=-3.309e+03 GT:AD:DP:GQ:PL 1/1:1,275:278:99:6197,702,0 chrVII 718859 . A G 6128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=267;Dels=0.00;FS=2.960;HaplotypeScore=14.8431;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=-0.795;QD=22.95;ReadPosRankSum=2.422;SB=-3.124e+03 GT:AD:DP:GQ:PL 1/1:2,265:267:99:6128,687,0 chrVII 718887 . T C 5586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=251;Dels=0.00;FS=2.358;HaplotypeScore=11.5214;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=-0.300;QD=22.26;ReadPosRankSum=2.836;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:3,248:251:99:5586,630,0 chrVII 718925 . A T 4910.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=21.82;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4910,549,0 chrVII 718949 . A G 3880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.965;DP=200;Dels=0.00;FS=2.579;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;MQRankSum=-2.091;QD=19.40;ReadPosRankSum=2.965;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:3880,441,0 chrVII 719000 . A G 2716 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=202;Dels=0.00;FS=2.506;HaplotypeScore=5.1641;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;MQRankSum=-1.775;QD=13.45;ReadPosRankSum=2.965;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:3,199:202:99:2749,309,0 chrVII 719008 . T C 2602 SnpCluster AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;QD=13.34;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:2635,294,0 chrVII 719009 . G A 2737 SnpCluster AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=0;QD=13.96;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:2770,294,0 chrVII 719020 . A G 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=198;Dels=0.00;FS=2.518;HaplotypeScore=3.6363;MLEAC=2;MLEAF=1.00;MQ=31.31;MQ0=0;MQRankSum=-0.061;QD=12.40;ReadPosRankSum=2.965;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:2489,279,0 chrVII 719031 . T C 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=192;Dels=0.00;FS=5.351;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;MQRankSum=-1.389;QD=13.89;ReadPosRankSum=1.696;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:2700,297,0 chrVII 719036 . G A 2793 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=36.13;MQ0=0;QD=14.25;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:2826,300,0 chrVII 719064 . A G 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.353;DP=181;Dels=0.00;FS=5.253;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;MQRankSum=0.584;QD=15.75;ReadPosRankSum=3.411;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:4,177:181:99:2884,330,0 chrVII 719140 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=21.29;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3300,354,0 chrVII 719144 . A G 2822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=3.487;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;MQRankSum=-0.225;QD=18.21;ReadPosRankSum=1.710;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:2855,321,0 chrVII 719309 . T G 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=145;Dels=0.00;FS=3.101;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=-0.824;QD=23.24;ReadPosRankSum=1.684;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3370,378,0 chrVII 719651 . G A 6320.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=16.7937;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.24;SB=-3.250e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:6320,702,0 chrVII 719759 . T C 3738.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.3177;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.52;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3738,414,0 chrVII 719825 . A G 4646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=225;Dels=0.00;FS=5.203;HaplotypeScore=7.4396;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.562;QD=20.65;ReadPosRankSum=-0.843;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,221:225:99:4646,508,0 chrVII 719849 . G A 4508.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=6.3716;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=20.58;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4508,486,0 chrVII 719906 . A G 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=7.6284;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=0.415;QD=15.28;ReadPosRankSum=1.708;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2233,267,0 chrVII 719952 . C T 1920 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=13.71;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1953,207,0 chrVII 719955 . C T 1991 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=226.1629;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=14.86;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2024,213,0 chrVII 720024 . T G 1754 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=13.92;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1787,204,0 chrVII 720028 . T A 2005 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=16.04;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2038,216,0 chrVII 720149 . C T 2719 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=22.47;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2752,297,0 chrVII 720396 . G A 3479.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=133.5018;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=21.48;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3479,378,0 chrVII 720495 . G T 4729.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=25.29;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4729,505,0 chrVII 721728 . A G 2789 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.4797;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2822,318,0 chrVII 721791 . G A 2472 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2505,273,0 chrVII 722169 . A G 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=1.060;QD=19.74;ReadPosRankSum=1.706;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:2717,303,0 chrVII 722184 . T C 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=7.851;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=-0.536;QD=19.50;ReadPosRankSum=2.415;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2763,315,0 chrVII 722610 . C T 3127 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=24.62;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3160,333,0 chrVII 722637 . G A 2938 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.50;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2971,315,0 chrVII 722662 . T A 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=6.412;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.988;QD=23.68;ReadPosRankSum=2.416;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3505,375,0 chrVII 723135 . T C 4477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=191;Dels=0.00;FS=3.032;HaplotypeScore=9.8466;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.071;QD=23.44;ReadPosRankSum=2.398;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4477,498,0 chrVII 723300 . G A 3924.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.50;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3924,420,0 chrVII 723328 . C T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.9969;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.59;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3727,402,0 chrVII 723576 . C T 2930 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.71;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2963,327,0 chrVII 723672 . A G 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=169;Dels=0.00;FS=2.848;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.669;QD=22.53;ReadPosRankSum=2.420;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:2,165:169:99:3808,426,0 chrVII 723984 . T C 4268.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.07;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4268,486,0 chrVII 724101 . G A 5783.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5783,642,0 chrVII 724269 . T C 4905.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=12.2001;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.33;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:4905,567,0 chrVII 724542 . G A 4064.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.8791;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=24.48;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4064,441,0 chrVII 724567 . C T 3922.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=23.35;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3922,438,0 chrVII 724581 . T C 3980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=3.222;HaplotypeScore=3.8686;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-0.804;QD=23.55;ReadPosRankSum=1.711;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3980,424,0 chrVII 724918 . G A 1864 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.3328;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=20.04;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1897,204,0 chrVII 724939 . G A 1631 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=0;QD=18.53;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1664,177,0 chrVII 725062 . C T 2333 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=17.54;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2366,249,0 chrVII 725064 . G A 2318 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=17.04;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2351,258,0 chrVII 725111 . T C 2370 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=19.43;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2403,270,0 chrVII 725139 . A G 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=3.960;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-0.711;QD=20.21;ReadPosRankSum=1.639;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2296,261,0 chrVII 725189 . T G 1686 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;MQRankSum=-1.142;QD=18.33;ReadPosRankSum=1.653;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,87:92:99:1719,192,0 chrVII 725190 . T C 1631 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=18.53;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1664,189,0 chrVII 725193 . C G 1602 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=18.00;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1635,186,0 chrVII 725478 . C T 5431.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=24.46;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5431,586,0 chrVII 725577 . G A 4990.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=6.6988;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=22.89;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4990,526,0 chrVII 725589 . G T 4433.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.03;FS=0.000;HaplotypeScore=36.3717;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=21.42;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4433,477,0 chrVII 725739 . G A 2769 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.03;FS=0.000;HaplotypeScore=57.8702;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=18.34;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2802,297,0 chrVII 726186 . A G 4273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5545;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.249;QD=24.70;ReadPosRankSum=1.712;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4273,477,0 chrVII 726262 . C T 4422.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=25.27;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4422,480,0 chrVII 726291 . G A 3956.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.5236;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.12;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3956,432,0 chrVII 726396 . T C 2864 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=22.73;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2897,324,0 chrVII 726585 . G A 1076 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=21.9889;MLEAC=2;MLEAF=1.00;MQ=35.21;MQ0=0;QD=12.96;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1109,120,0 chrVII 726598 . C A 1328 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=12.5272;MLEAC=2;MLEAF=1.00;MQ=34.13;MQ0=0;QD=14.43;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1361,147,0 chrVII 726602 . A G 1258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;MQRankSum=-1.552;QD=13.10;ReadPosRankSum=1.696;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1291,147,0 chrVII 726695 . C T 2829 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.4976;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=22.28;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2862,309,0 chrVII 726883 . A G 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.860;QD=20.30;ReadPosRankSum=1.709;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3098,354,0 chrVII 726889 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=21.66;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3336,360,0 chrVII 726922 . T C 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=3.643;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-1.665;QD=21.37;ReadPosRankSum=1.710;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3334,369,0 chrVII 727122 . T A 4015.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=24.94;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4015,435,0 chrVII 727210 . A G 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.550;QD=21.80;ReadPosRankSum=1.705;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2824,312,0 chrVII 727267 . T A 3528.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=4.400;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=0.165;QD=22.47;ReadPosRankSum=1.666;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3528,381,0 chrVII 727279 . A G 3425.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=21.54;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3425,378,0 chrVII 727326 . T C 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=146;Dels=0.00;FS=3.720;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;MQRankSum=-0.569;QD=19.35;ReadPosRankSum=1.708;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2858,318,0 chrVII 727337 . A T 2694 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=114.9798;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=18.20;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2727,294,0 chrVII 727958 . T C 2405 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.69;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2438,273,0 chrVII 727974 . A G 2504 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.96;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2537,282,0 chrVII 728685 . A T 4192.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4192,450,0 chrVII 729333 . T C 3821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.8008;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-1.158;QD=21.11;ReadPosRankSum=1.713;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3821,429,0 chrVII 729374 . T C 3744.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.1347;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.57;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3744,423,0 chrVII 729393 . G T 3594.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.66;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3594,387,0 chrVII 729408 . T C 3493.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.41;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3493,387,0 chrVII 729667 . A G 2784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.3920;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.846;QD=21.58;ReadPosRankSum=1.678;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2817,318,0 chrVII 729861 . T A 3160 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=24.50;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3193,333,0 chrVII 729983 . T C 2964 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.1748;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.34;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2997,333,0 chrVII 730017 . G A 2782 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.84;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2815,294,0 chrVII 730219 . A T 2631 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=21.39;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2664,285,0 chrVII 730225 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=20.26;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2646,285,0 chrVII 730407 . C T 2520 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8385;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.30;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2553,285,0 chrVII 730774 . G A 2711 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.59;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2744,297,0 chrVII 730905 . A G 1467 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.82;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1500,177,0 chrVII 730967 . A G 2461 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.44;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2494,279,0 chrVII 730996 . G T 2332 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=19.93;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2365,252,0 chrVII 731008 . A G 2132 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=13.6085;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=17.62;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2165,252,0 chrVII 731090 . G T 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=101;Dels=0.00;FS=4.480;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.669;QD=23.60;ReadPosRankSum=-0.532;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2417,239,0 chrVII 731462 . G A 4444.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.39;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4444,474,0 chrVII 731893 . T C 6782.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=19.2452;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.55;SB=-4.169e+03 GT:AD:DP:GQ:PL 1/1:0,329:329:99:6782,756,0 chrVII 732112 . A G 5549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=272;Dels=0.00;FS=5.719;HaplotypeScore=21.4541;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.174;QD=20.40;ReadPosRankSum=2.930;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:3,268:272:99:5549,642,0 chrVII 732190 . A G 4344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.205;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=21.4637;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.792;QD=18.81;ReadPosRankSum=2.375;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:4344,498,0 chrVII 732228 . A G 4807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.727;DP=246;Dels=0.00;FS=2.565;HaplotypeScore=10.4527;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.669;QD=19.54;ReadPosRankSum=2.947;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:3,243:246:99:4807,543,0 chrVII 732242 . T A 5149.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.68;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5149,558,0 chrVII 732382 . T A 4481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.8134;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.304;QD=23.96;ReadPosRankSum=1.639;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4481,480,0 chrVII 732451 . A G 4155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=3.680;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.876;QD=22.70;ReadPosRankSum=1.713;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4155,462,0 chrVII 732841 . T G 1904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=102;Dels=0.00;FS=3.038;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-0.229;QD=18.67;ReadPosRankSum=2.377;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1937,219,0 chrVII 732856 . T C 2000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=1.192;QD=18.35;ReadPosRankSum=1.573;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2033,231,0 chrVII 732971 . A G 2600 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=23.42;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2633,291,0 chrVII 733045 . A G 2372 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.56;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2405,273,0 chrVII 733088 . G T 1932 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.77;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1965,213,0 chrVII 733142 . C T 901 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=0;QD=10.24;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:934,102,0 chrVII 733257 . A G 4699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=4.681;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.623;QD=24.47;ReadPosRankSum=1.696;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4699,522,0 chrVII 733373 . G C 4763.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=22.47;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4763,543,0 chrVII 733558 . T C 3512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=163;Dels=0.00;FS=7.010;HaplotypeScore=131.1350;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-0.234;QD=21.55;ReadPosRankSum=2.419;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3512,399,0 chrVII 733658 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.18;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2584,285,0 chrVII 733673 . T A 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.944;QD=21.85;ReadPosRankSum=1.676;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2743,300,0 chrVII 733771 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=23.26;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3267,357,0 chrVII 733821 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=14.8899;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.79;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3497,378,0 chrVII 733930 . A C 3274.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=18.39;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3274,366,0 chrVII 733949 . A C 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=4.285;HaplotypeScore=2.4471;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=-1.609;QD=16.95;ReadPosRankSum=1.671;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:2898,333,0 chrVII 733970 . C T 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=177;Dels=0.00;FS=4.155;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;MQRankSum=-1.028;QD=15.49;ReadPosRankSum=1.693;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:2774,300,0 chrVII 733979 . A G 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=176;Dels=0.00;FS=8.300;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;MQRankSum=-1.026;QD=13.32;ReadPosRankSum=2.422;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:2378,273,0 chrVII 733994 . A G 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=166;Dels=0.00;FS=4.181;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;MQRankSum=-1.249;QD=12.26;ReadPosRankSum=1.711;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:2068,231,0 chrVII 734123 . G A 5222.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.6740;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=24.63;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5222,576,0 chrVII 734171 . G A 5012.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.0574;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=23.64;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5012,540,0 chrVII 734330 . A T 5378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.573;DP=236;Dels=0.00;FS=16.807;HaplotypeScore=19.1263;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.489;QD=22.79;ReadPosRankSum=3.740;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:5,231:236:99:5378,588,0 chrVII 734573 . T A 5029.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.65;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5029,538,0 chrVII 734618 . T C 4316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.5015;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-1.313;QD=22.72;ReadPosRankSum=0.711;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4316,477,0 chrVII 734668 . A T 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.1222;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=0.092;QD=20.47;ReadPosRankSum=1.622;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3848,417,0 chrVII 734678 . C G 3675.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.12;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3675,417,0 chrVII 734741 . G C 3029 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.11;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3062,342,0 chrVII 734773 . C A 2647 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.46;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2680,288,0 chrVII 734774 . C T 2624 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.15;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2657,285,0 chrVII 734831 . G C 2350 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.11;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2383,267,0 chrVII 734870 . G A 2913 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.68;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2946,330,0 chrVII 734928 . G A 3038 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.02;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3071,339,0 chrVII 735205 . T C 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.094;QD=21.79;ReadPosRankSum=1.701;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2452,276,0 chrVII 735279 . T A 1926 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.7885;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=20.27;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1959,210,0 chrVII 735294 . A G 1735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=3.163;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=-0.697;QD=19.94;ReadPosRankSum=1.653;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1768,198,0 chrVII 735310 . A G 1822 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.19;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1855,207,0 chrVII 735374 . G A 1989 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.94;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:2022,216,0 chrVII 735444 . G A 2834 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=24.02;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2867,303,0 chrVII 735461 . T C 2893 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=22.25;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2926,324,0 chrVII 735559 . A G 2393 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=21.56;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2426,279,0 chrVII 735561 . C T 2565 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=23.11;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2598,273,0 chrVII 735628 . G A 2130 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=2;QD=20.88;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2163,234,0 chrVII 735681 . A G 2244 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.87;MQ0=2;QD=19.68;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2277,258,0 chrVII 735707 . A T 2753 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;QD=20.70;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2786,327,0 chrVII 735734 . T C 2463 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=5.477;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;MQRankSum=-0.087;QD=20.19;ReadPosRankSum=1.674;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2496,291,0 chrVII 735738 . A T 2465 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;MQRankSum=-1.249;QD=20.04;ReadPosRankSum=1.675;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2498,270,0 chrVII 735742 . A G 2204 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=116;Dels=0.00;FS=2.461;HaplotypeScore=4.8894;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;MQRankSum=-1.478;QD=19.00;ReadPosRankSum=2.940;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2237,261,0 chrVII 735789 . T C 2065 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=21.29;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2098,237,0 chrVII 735811 . A G 1857 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=21.34;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1890,213,0 chrVII 735892 . C A 1589 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=0;QD=21.77;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1622,183,0 chrVII 735893 . C G 1581 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=0;QD=21.66;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1614,183,0 chrVII 735895 . T A 1570 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;QD=23.09;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1603,177,0 chrVII 735936 . T C 828 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=31.91;MQ0=0;QD=16.90;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:99:861,102,0 chrVII 735958 . A G 425 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.40;MQ0=0;QD=13.28;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:57:458,57,0 chrVII 735962 . T C 360 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.98;MQ0=0;QD=13.33;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:48:393,48,0 chrVII 735972 . A G 296 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.72;MQ0=0;MQRankSum=1.619;QD=12.33;ReadPosRankSum=2.246;SB=-7.610e-03 GT:AD:DP:GQ:PL 1/1:2,22:24:39:329,39,0 chrVII 735976 . T C 300 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=0;QD=13.64;SB=-7.610e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:39:333,39,0 chrVII 736414 . G A 1258 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=19.06;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1291,144,0 chrVII 736450 . G T 1238 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;QD=18.21;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1271,138,0 chrVII 736482 . C G 1322 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=5.8395;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=0;QD=17.39;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1355,153,0 chrVII 736788 . T A 3072 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.59;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3105,333,0 chrVII 737004 . G A 3773.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.1691;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.15;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3773,408,0 chrVII 737189 . C A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.17;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3337,348,0 chrVII 737481 . A T 3755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.866;QD=23.47;ReadPosRankSum=1.688;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3755,405,0 chrVII 738192 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.92;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2999,339,0 chrVII 738263 . G C 2235 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.04;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,94:97:99:2268,252,0 chrVII 738379 . T C 2742 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.09;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2775,318,0 chrVII 738435 . T A 2943 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.94;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2976,321,0 chrVII 738466 . T C 2724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1843;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.684;QD=22.70;ReadPosRankSum=1.587;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2757,306,0 chrVII 738493 . G A 2762 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=24.88;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2795,294,0 chrVII 738540 . G A 2022 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.28;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2055,219,0 chrVII 738565 . C T 1931 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=18.57;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1964,207,0 chrVII 738759 . T C 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.176;QD=22.96;ReadPosRankSum=1.707;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3225,366,0 chrVII 738861 . C T 2624 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.6665;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=21.51;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2657,297,0 chrVII 738891 . A T 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=119;Dels=0.00;FS=3.680;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=1.004;QD=20.37;ReadPosRankSum=1.645;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2457,267,0 chrVII 739067 . C G 2891 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=19.67;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2924,333,0 chrVII 739070 . C A 2882 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=6.3774;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=19.74;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2915,321,0 chrVII 739081 . T C 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.246;DP=145;Dels=0.00;FS=2.912;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;MQRankSum=-1.890;QD=17.48;ReadPosRankSum=2.026;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2567,275,0 chrVII 739088 . T C 2558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=149;Dels=0.00;FS=2.918;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;MQRankSum=-0.074;QD=17.17;ReadPosRankSum=2.417;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2591,297,0 chrVII 739200 . C T 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.016;DP=156;Dels=0.00;FS=29.115;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;MQRankSum=-1.168;QD=15.43;ReadPosRankSum=4.971;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:12,143:156:99:2440,183,0 chrVII 739206 . A G 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.347;DP=159;Dels=0.00;FS=9.044;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;MQRankSum=-1.452;QD=16.75;ReadPosRankSum=3.392;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:4,152:159:99:2697,312,0 chrVII 739263 . T A 2801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=168;Dels=0.00;FS=6.694;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;MQRankSum=-0.651;QD=16.67;ReadPosRankSum=2.274;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:2834,309,0 chrVII 739273 . C T 2966 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=17.24;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2999,318,0 chrVII 739392 . G A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=8.2548;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=22.72;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3453,369,0 chrVII 739449 . T C 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.603;HaplotypeScore=6.3190;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;MQRankSum=0.918;QD=19.25;ReadPosRankSum=1.709;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:2920,347,0 chrVII 739458 . C T 3029 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=20.61;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3062,342,0 chrVII 739469 . G A 2788 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;QD=19.10;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2821,321,0 chrVII 739476 . C G 2561 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=45.23;MQ0=0;QD=17.42;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2594,303,0 chrVII 739619 . A C 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=137;Dels=0.00;FS=3.037;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=-0.920;QD=20.03;ReadPosRankSum=2.359;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:2,133:137:99:2777,312,0 chrVII 739622 . A T 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-0.362;QD=20.93;ReadPosRankSum=1.706;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2837,300,0 chrVII 739868 . C A 2060 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.7751;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.24;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2093,231,0 chrVII 739889 . T A 2226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-1.402;QD=21.00;ReadPosRankSum=1.666;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2259,252,0 chrVII 740339 . T C 4601.01 SnpCluster AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=19.33;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:4601,516,0 chrVII 740340 . G A 4821.01 SnpCluster AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=20.34;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4821,516,0 chrVII 740342 . C T 4829.01 SnpCluster AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=20.73;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4829,517,0 chrVII 740372 . T C 4726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=0.911;QD=17.50;ReadPosRankSum=1.706;SB=-3.339e+03 GT:AD:DP:GQ:PL 1/1:1,269:270:99:4726,528,0 chrVII 740621 . T A 6264.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=20.1846;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.82;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:6264,687,0 chrVII 740657 . G A 6628.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=17.2738;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.70;SB=-3.530e+03 GT:AD:DP:GQ:PL 1/1:0,290:292:99:6628,741,0 chrVII 740993 . A G 3888.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.595;DP=241;Dels=0.00;FS=7.951;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;MQRankSum=-1.209;QD=16.13;ReadPosRankSum=3.795;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:5,236:241:99:3888,438,0 chrVII 741000 . A C 3406.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=216;Dels=0.00;FS=2.908;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;MQRankSum=-0.453;QD=15.77;ReadPosRankSum=2.415;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:2,212:216:99:3406,393,0 chrVII 741002 . A G 3357.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;MQRankSum=-1.062;QD=15.26;ReadPosRankSum=1.684;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:1,216:220:99:3357,369,0 chrVII 741047 . C T 3327.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.8757;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=17.06;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:3327,354,0 chrVII 741068 . C T 3320.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=18.44;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3320,354,0 chrVII 741442 . C T 4198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.086;DP=186;Dels=0.00;FS=3.439;HaplotypeScore=15.2781;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.560;QD=22.57;ReadPosRankSum=1.656;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4198,426,0 chrVII 741491 . T C 4174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=185;Dels=0.00;FS=8.113;HaplotypeScore=8.1593;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.033;QD=22.56;ReadPosRankSum=2.423;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4174,471,0 chrVII 741692 . C T 2309 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.32;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2342,255,0 chrVII 741756 . A G 1792 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.9341;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.84;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1825,204,0 chrVII 742025 . C A 1752 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=23.05;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1785,195,0 chrVII 742069 . T C 1998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=94;Dels=0.00;FS=4.075;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=-1.431;QD=21.26;ReadPosRankSum=1.657;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,91:94:99:2031,225,0 chrVII 742081 . G A 2139 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=23.51;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2172,237,0 chrVII 742219 . A T 1306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.070;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;MQRankSum=-0.166;QD=17.89;ReadPosRankSum=1.685;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1339,141,0 chrVII 742255 . G A 1531 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=78.2069;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=0;QD=16.12;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1564,168,0 chrVII 742270 . T C 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=90;Dels=0.00;FS=5.852;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;MQRankSum=-2.855;QD=13.03;ReadPosRankSum=2.720;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:3,87:90:99:1206,138,0 chrVII 742276 . C T 1266 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.67;MQ0=0;QD=13.61;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1299,141,0 chrVII 742290 . G A 1237 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;QD=12.25;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1270,138,0 chrVII 742513 . T C 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=157;Dels=0.00;FS=2.980;HaplotypeScore=16.4484;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.748;QD=21.88;ReadPosRankSum=2.418;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3435,384,0 chrVII 742966 . G C 5092.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5092,573,0 chrVII 743032 . G A 4317.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.2564;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.53;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4317,465,0 chrVII 743456 . G A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.31;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4109,430,0 chrVII 743539 . A G 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=177;Dels=0.00;FS=3.404;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.452;QD=21.52;ReadPosRankSum=1.712;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:1,172:177:99:3809,441,0 chrVII 743755 . G A 4072.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.0341;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.27;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4072,450,0 chrVII 743797 . G A 3772.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.59;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3772,408,0 chrVII 743803 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=171;Dels=0.00;FS=8.049;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=1.386;QD=20.05;ReadPosRankSum=2.421;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3428,381,0 chrVII 743899 . T C 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=3.418;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.346;QD=22.08;ReadPosRankSum=1.708;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3234,363,0 chrVII 744064 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.7725;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=24.70;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3680,393,0 chrVII 744469 . A G 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=121;Dels=0.00;FS=4.296;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.360;QD=22.96;ReadPosRankSum=1.703;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2811,306,0 chrVII 744682 . T C 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=159;Dels=0.00;FS=3.093;HaplotypeScore=10.0658;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-1.166;QD=22.97;ReadPosRankSum=1.710;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3652,408,0 chrVII 744730 . A G 2586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=159;Dels=0.00;FS=7.489;HaplotypeScore=6.2640;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=0.257;QD=16.26;ReadPosRankSum=1.890;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:2619,297,0 chrVII 744731 . G A 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=162;Dels=0.00;FS=3.698;HaplotypeScore=5.0709;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-0.430;QD=16.86;ReadPosRankSum=1.423;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,157:162:99:2764,303,0 chrVII 744885 . T A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.7330;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.55;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4076,435,0 chrVII 745003 . A C 4212.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.77;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4212,471,0 chrVII 745285 . T A 4570.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.80;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4570,498,0 chrVII 745337 . G A 4402.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.59;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4402,474,0 chrVII 745446 . G A 2971 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.69;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3004,321,0 chrVII 745560 . C T 2787 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=23.22;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2820,297,0 chrVII 745588 . G A 2258 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.92;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2291,252,0 chrVII 745712 . G T 2098 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;QD=18.24;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2131,240,0 chrVII 745730 . T G 1402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.97;MQ0=0;MQRankSum=0.520;QD=13.88;ReadPosRankSum=1.663;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:1435,165,0 chrVII 745746 . C G 1486 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=281.2539;MLEAC=2;MLEAF=1.00;MQ=37.83;MQ0=0;QD=13.27;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1519,171,0 chrVII 745777 . C T 1855 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;QD=17.02;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1888,204,0 chrVII 745888 . G A 2871 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=21.75;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2904,315,0 chrVII 745891 . C T 2549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;MQRankSum=-1.353;QD=19.91;ReadPosRankSum=-0.568;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2582,258,0 chrVII 745981 . C T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.0257;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=22.99;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3252,360,0 chrVII 746158 . A G 3704.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.244;DP=163;Dels=0.00;FS=3.371;HaplotypeScore=11.2669;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.797;QD=22.72;ReadPosRankSum=1.711;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3704,390,0 chrVII 746194 . G A 3960.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3960,426,0 chrVII 746536 . G A 1862 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5306;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=21.40;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1895,201,0 chrVII 746541 . A C 1684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.267;HaplotypeScore=4.5194;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;MQRankSum=-0.458;QD=19.14;ReadPosRankSum=1.254;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1717,192,0 chrVII 746615 . T C 964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=109;Dels=0.00;FS=3.032;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;MQRankSum=-1.118;QD=8.84;ReadPosRankSum=1.908;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:997,114,0 chrVII 746628 . C A 1357 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=12.68;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1390,150,0 chrVII 746820 . G A 3764.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=22.81;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3764,402,0 chrVII 746824 . A G 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.587;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;MQRankSum=-0.757;QD=20.60;ReadPosRankSum=-0.467;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3461,376,0 chrVII 746836 . T C 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=174;Dels=0.00;FS=3.007;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=-0.360;QD=19.59;ReadPosRankSum=2.421;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3408,396,0 chrVII 746911 . T A 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.477;DP=150;Dels=0.00;FS=11.637;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.503;QD=22.35;ReadPosRankSum=2.940;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:3352,357,0 chrVII 747045 . C T 2520 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.9081;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=19.24;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2553,279,0 chrVII 747090 . T G 1732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=115;Dels=0.00;FS=7.462;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.332;QD=15.06;ReadPosRankSum=2.407;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:1765,195,0 chrVII 747244 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.52;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2903,324,0 chrVII 747409 . A G 3607.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4518;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.27;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3607,402,0 chrVII 747544 . C T 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=147;Dels=0.00;FS=3.228;HaplotypeScore=6.8599;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.012;QD=19.75;ReadPosRankSum=1.393;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:2936,318,0 chrVII 747545 . A G 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=146;Dels=0.00;FS=6.298;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=-1.579;QD=18.76;ReadPosRankSum=2.415;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:2,142:146:99:2772,312,0 chrVII 747860 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.07;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3611,402,0 chrVII 748014 . A G 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.175;QD=22.84;ReadPosRankSum=1.710;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3609,396,0 chrVII 749414 . T C 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=115;Dels=0.00;FS=6.864;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.781;QD=22.89;ReadPosRankSum=2.407;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2665,297,0 chrVII 749615 . A T 3460.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=24.54;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3460,369,0 chrVII 749702 . A G 3601.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=20.58;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3601,420,0 chrVII 749720 . C T 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=170;Dels=0.00;FS=6.052;HaplotypeScore=9.1228;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-2.047;QD=21.87;ReadPosRankSum=2.746;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:3718,396,0 chrVII 749782 . T C 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=178;Dels=0.00;FS=6.068;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;MQRankSum=-1.314;QD=16.89;ReadPosRankSum=2.960;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:3,174:178:99:3039,339,0 chrVII 749791 . T C 2923 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=16.15;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:2956,348,0 chrVII 749804 . A G 2816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=193;Dels=0.00;FS=6.086;HaplotypeScore=1.9497;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;MQRankSum=-0.912;QD=14.59;ReadPosRankSum=2.953;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:2849,333,0 chrVII 749818 . C T 3017 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=15.39;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3050,327,0 chrVII 749837 . C A 2643 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=14.21;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:2676,294,0 chrVII 749969 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.296;QD=23.90;ReadPosRankSum=1.664;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3633,408,0 chrVII 750114 . G T 2654 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.49;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2687,297,0 chrVII 750272 . A T 2557 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.12;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2590,279,0 chrVII 750344 . C T 3101 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5413;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.42;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3134,336,0 chrVII 750394 . C A 3288.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.83;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3288,363,0 chrVII 750612 . T A 5390.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.72;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5390,582,0 chrVII 750840 . T C 5001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=227;Dels=0.00;FS=4.350;HaplotypeScore=10.2844;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.414;QD=22.03;ReadPosRankSum=1.717;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:5001,567,0 chrVII 750918 . A G 3944.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.48;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3944,435,0 chrVII 750949 . C G 4084.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.16;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,189:193:99:4084,450,0 chrVII 750972 . G A 4254.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.1659;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.04;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4254,456,0 chrVII 751238 . G A 3725.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.35;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3725,408,0 chrVII 751388 . T A 3670.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.3926;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.80;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3670,396,0 chrVII 751583 . A C 4036.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.1388;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.28;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4036,459,0 chrVII 751595 . G A 4113.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=18.70;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4113,444,0 chrVII 751620 . G A 4399.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=19.29;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:4399,471,0 chrVII 751660 . T C 4478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=229;Dels=0.00;FS=9.922;HaplotypeScore=10.9456;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.678;QD=19.55;ReadPosRankSum=2.943;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:3,225:229:99:4478,492,0 chrVII 751927 . C T 2791 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2824,306,0 chrVII 752078 . C T 2749 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.53;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2782,306,0 chrVII 752357 . A G 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=119;Dels=0.00;FS=6.208;HaplotypeScore=10.9904;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.054;QD=22.85;ReadPosRankSum=2.408;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2752,315,0 chrVII 752411 . T C 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.127;QD=22.12;ReadPosRankSum=1.698;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2311,261,0 chrVII 752477 . T G 2392 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.00;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2425,276,0 chrVII 752554 . T C 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=132;Dels=0.00;FS=5.928;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=1.954;QD=21.98;ReadPosRankSum=2.916;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2935,324,0 chrVII 752597 . G A 3188 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=23.44;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3221,339,0 chrVII 752843 . A G 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=3.042;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=0.436;QD=18.03;ReadPosRankSum=1.607;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2539,294,0 chrVII 752845 . C T 2628 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=18.77;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2661,294,0 chrVII 752948 . G A 4599.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.7310;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4599,498,0 chrVII 753116 . T C 9964.01 filter AC=2;AF=1.00;AN=2;DP=435;Dels=0.00;FS=0.000;HaplotypeScore=28.7502;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.91;SB=-3.287e+03 GT:AD:DP:GQ:PL 1/1:0,434:435:99:9964,1122,0 chrVII 754427 . G T 2248 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.02;FS=0.000;HaplotypeScore=24.0062;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=17.98;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2281,255,0 chrVII 754453 . C T 2004 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.9829;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=18.05;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2037,219,0 chrVII 754555 . G A 2631 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2664,285,0 chrVII 754634 . G A 1992 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.44;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2025,219,0 chrVII 754648 . C G 1956 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=21.73;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1989,222,0 chrVII 754670 . G C 1982 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.54;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2015,228,0 chrVII 754860 . C G 3312.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.53;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3312,387,0 chrVII 755085 . T C 4419.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4419,492,0 chrVII 755305 . T C 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=157;Dels=0.00;FS=4.942;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.910;QD=20.85;ReadPosRankSum=1.710;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3274,369,0 chrVII 755549 . T A 2108 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.03;FS=0.000;HaplotypeScore=8.9439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.99;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2141,234,0 chrVII 756297 . C T 5171.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.39;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5171,573,0 chrVII 756484 . G A 4025.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.74;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:4025,444,0 chrVII 756717 . C T 5008.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.92;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5008,537,0 chrVII 756925 . T C 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=172;Dels=0.00;FS=3.379;HaplotypeScore=7.3639;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.289;QD=22.82;ReadPosRankSum=1.692;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3925,441,0 chrVII 756983 . C T 4142.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.36;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4142,447,0 chrVII 757121 . C T 2872 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.76;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2905,321,0 chrVII 757351 . A G 3986.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.1933;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.73;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3986,450,0 chrVII 757480 . A G 4350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.9845;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.517;QD=22.77;ReadPosRankSum=1.714;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4350,486,0 chrVII 757707 . C T 2777 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=22.76;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2810,303,0 chrVII 757758 . C G 2411 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.03;FS=0.000;HaplotypeScore=42.0722;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.72;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2444,270,0 chrVII 758035 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2803,297,0 chrVII 758187 . G A 2813 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2846,300,0 chrVII 758589 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.89;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2780,294,0 chrVII 759037 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.3822;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.54;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3414,366,0 chrVII 759633 . G A 4789.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.3151;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4789,513,0 chrVII 759759 . G A 5376.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5376,582,0 chrVII 759896 . C T 5535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=14.9535;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.044;QD=23.45;ReadPosRankSum=0.696;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:1,234:236:99:5535,603,0 chrVII 760589 . T C 3075 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3108,354,0 chrVII 760967 . C T 5540.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.83;SB=-2.853e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:5540,624,0 chrVII 760976 . T C 5554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=8.0802;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-0.052;QD=20.65;ReadPosRankSum=1.719;SB=-3.143e+03 GT:AD:DP:GQ:PL 1/1:1,265:269:99:5554,624,0 chrVII 761214 . A G 3922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.7228;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=1.191;QD=24.51;ReadPosRankSum=1.710;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3922,438,0 chrVII 761445 . T C 2826 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.91;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2859,321,0 chrVII 762057 . C T 3756.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=20.6539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.41;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3756,411,0 chrVII 762371 . T C 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=107;Dels=0.00;FS=2.816;HaplotypeScore=9.7474;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.484;QD=22.64;ReadPosRankSum=2.404;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2456,276,0 chrVII 763036 . G A 5563.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.07;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:5563,595,0 chrVII 763187 . A G 4138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=178;Dels=0.00;FS=2.878;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.297;QD=23.25;ReadPosRankSum=2.381;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4138,465,0 chrVII 763227 . A G 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=151;Dels=0.00;FS=3.016;HaplotypeScore=13.4272;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.289;QD=22.20;ReadPosRankSum=2.384;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3352,375,0 chrVII 763324 . G C 3116 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.03;FS=0.000;HaplotypeScore=12.3723;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.64;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3149,354,0 chrVII 763399 . A C 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=138;Dels=0.00;FS=9.516;HaplotypeScore=119.2382;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.715;QD=20.22;ReadPosRankSum=2.905;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:2824,315,0 chrVII 763413 . T C 2466 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.05;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2499,279,0 chrVII 763508 . C T 2165 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.42;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2198,234,0 chrVII 763555 . G A 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-1.631;QD=22.87;ReadPosRankSum=0.454;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2434,261,0 chrVII 763747 . G T 3016 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=24.13;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3049,330,0 chrVII 763960 . T C 5847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=11.0245;MLEAC=2;MLEAF=1.00;MQ=35.46;MQ0=1;MQRankSum=1.011;QD=19.82;ReadPosRankSum=1.720;SB=-2.944e+03 GT:AD:DP:GQ:PL 1/1:1,293:295:99:5847,669,0 chrVII 764662 . G A 5573.01 filter AC=2;AF=1.00;AN=2;DP=440;Dels=0.00;FS=0.000;HaplotypeScore=16.4984;MLEAC=2;MLEAF=1.00;MQ=23.51;MQ0=25;QD=12.67;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,440:440:99:5573,618,0 chrVII 764679 . C T 3946.01 filter AC=2;AF=1.00;AN=2;DP=375;Dels=0.00;FS=0.000;HaplotypeScore=5.0481;MLEAC=2;MLEAF=1.00;MQ=22.04;MQ0=41;QD=10.52;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,373:375:99:3946,453,0 chrVII 764689 . A G 3356.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.233;DP=348;Dels=0.00;FS=12.757;HaplotypeScore=11.8758;MLEAC=2;MLEAF=1.00;MQ=21.92;MQ0=50;MQRankSum=-2.786;QD=9.64;ReadPosRankSum=4.371;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:7,340:348:99:3356,381,0 chrVII 764833 . A G 3464.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.365;DP=419;Dels=0.00;FS=6.334;HaplotypeScore=33.3395;MLEAC=1;MLEAF=0.500;MQ=39.94;MQ0=5;MQRankSum=-0.162;QD=8.27;ReadPosRankSum=0.060;SB=-1.390e+03 GT:AD:DP:GQ:PL 0/1:206,212:419:99:3464,0,3475 chrVII 764890 . G A 2503.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.200;DP=271;Dels=0.00;FS=60.590;HaplotypeScore=28.2951;MLEAC=1;MLEAF=0.500;MQ=36.98;MQ0=49;MQRankSum=3.647;QD=9.24;ReadPosRankSum=2.534;SB=-4.760e+02 GT:AD:DP:GQ:PL 0/1:129,141:271:99:2533,0,1380 chrVII 764998 . T A 5439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=278;Dels=0.00;FS=7.391;HaplotypeScore=7.6257;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-0.004;QD=19.56;ReadPosRankSum=2.414;SB=-3.057e+03 GT:AD:DP:GQ:PL 1/1:2,276:278:99:5439,591,0 chrVII 765005 . T A 5493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=284;Dels=0.00;FS=3.568;HaplotypeScore=8.6909;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=0.356;QD=19.34;ReadPosRankSum=1.634;SB=-3.280e+03 GT:AD:DP:GQ:PL 1/1:1,283:284:99:5493,592,0 chrVII 765096 . T C 4098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.514;DP=252;Dels=0.00;FS=122.949;HaplotypeScore=17.8746;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=6.392;QD=16.26;ReadPosRankSum=1.751;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:34,215:252:37:4098,37,0 chrVII 765286 . A C 5756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.669;QD=20.56;ReadPosRankSum=1.682;SB=-3.463e+03 GT:AD:DP:GQ:PL 1/1:1,275:280:99:5756,663,0 chrVII 765415 . A G 5256.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.0082;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.36;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5256,594,0 chrVII 765988 . A G 2936 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.0712;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.47;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2969,333,0 chrVII 766068 . A G 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=160;Dels=0.00;FS=6.849;HaplotypeScore=9.6935;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=1.190;QD=22.50;ReadPosRankSum=2.281;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3600,405,0 chrVII 766123 . C T 3845.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.627;QD=20.56;ReadPosRankSum=1.526;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3845,423,0 chrVII 766129 . G A 3581.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=19.68;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3581,399,0 chrVII 766550 . T A 3159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.624;QD=25.27;ReadPosRankSum=1.677;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3192,348,0 chrVII 766737 . T C 3154 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7752;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3187,354,0 chrVII 766797 . C T 2386 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=14.5129;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.57;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2419,270,0 chrVII 766938 . A G 3645.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3645,411,0 chrVII 767046 . C A 2808 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.46;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2841,321,0 chrVII 767234 . A G 4266.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=23.44;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4266,471,0 chrVII 767259 . A G 3804.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.61;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3804,438,0 chrVII 767304 . T C 2582 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;QD=17.56;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2615,306,0 chrVII 767328 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=39.36;MQ0=0;QD=17.01;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2618,294,0 chrVII 767333 . A G 2514 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=39.53;MQ0=0;QD=16.43;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2547,291,0 chrVII 767344 . C T 2602 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=16.57;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2635,297,0 chrVII 767355 . C T 2690 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=16.01;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2723,306,0 chrVII 767373 . T C 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.279;DP=176;Dels=0.01;FS=14.355;HaplotypeScore=7.2998;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-1.652;QD=15.53;ReadPosRankSum=3.339;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:4,170:174:99:2767,303,0 chrVII 767464 . G A 3902.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.04;FS=0.000;HaplotypeScore=58.9701;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.21;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3902,426,0 chrVII 767698 . A G 2977 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=16.36;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3010,339,0 chrVII 768079 . T C 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=1.414;QD=21.66;ReadPosRankSum=1.669;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2394,273,0 chrVII 768165 . G A 2619 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.77;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2652,285,0 chrVII 768214 . T C 2369 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.15;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2402,276,0 chrVII 768250 . C T 3016 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0656;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.51;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3049,327,0 chrVII 768310 . C T 4640.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.0394;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=23.79;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4640,504,0 chrVII 768334 . A G 3803.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=22.64;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3803,426,0 chrVII 768353 . T C 3552.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=22.20;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3552,399,0 chrVII 768496 . A G 4133.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=22.83;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4133,459,0 chrVII 768538 . T C 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=153;Dels=0.00;FS=4.081;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=0.379;QD=19.37;ReadPosRankSum=1.709;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:2996,351,0 chrVII 768552 . G A 2602 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;QD=19.13;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2635,279,0 chrVII 768562 . C T 2159 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=17.13;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2192,243,0 chrVII 768583 . T C 1939 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=18.64;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1972,222,0 chrVII 768616 . T A 1776 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=18.89;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1809,195,0 chrVII 768739 . G A 2336 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.83;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2369,255,0 chrVII 769024 . A T 1650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=3.133;HaplotypeScore=6.4215;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.155;QD=22.92;ReadPosRankSum=1.684;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1683,183,0 chrVII 769074 . C T 1872 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.77;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1905,210,0 chrVII 769183 . G A 1956 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1989,222,0 chrVII 769305 . T A 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.381;QD=22.45;ReadPosRankSum=1.697;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2300,246,0 chrVII 769360 . A G 2967 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5546;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.00;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3000,339,0 chrVII 769395 . T C 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.477;QD=24.22;ReadPosRankSum=1.650;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,126:129:99:3158,360,0 chrVII 769730 . C T 3557.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=25.41;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3557,381,0 chrVII 769748 . A C 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=155;Dels=0.00;FS=4.829;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=0.456;QD=22.79;ReadPosRankSum=1.709;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,151:155:99:3533,399,0 chrVII 770328 . A G 3137 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.90;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3170,360,0 chrVII 770500 . T A 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=3.475;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=-1.456;QD=22.79;ReadPosRankSum=1.707;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3178,333,0 chrVII 770505 . C T 3031 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=21.20;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3064,333,0 chrVII 770589 . T C 4275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.2734;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.212;QD=23.36;ReadPosRankSum=1.713;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,179:183:99:4275,480,0 chrVII 770922 . C T 4447.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.6453;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=22.92;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4447,474,0 chrVII 770930 . G A 3962.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=21.30;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3962,426,0 chrVII 771068 . G A 3928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.9527;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.438;QD=25.34;ReadPosRankSum=0.691;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3928,417,0 chrVII 771837 . A G 3312.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0596;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.23;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3312,390,0 chrVII 772053 . T C 3596.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.28;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3596,411,0 chrVII 772150 . C T 2246 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6114;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=19.03;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2279,249,0 chrVII 772366 . A G 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=137;Dels=0.00;FS=3.627;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=1.350;QD=22.96;ReadPosRankSum=1.707;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3178,360,0 chrVII 772517 . C A 2801 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.88;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2834,306,0 chrVII 772705 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.8794;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.33;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3313,369,0 chrVII 772853 . A G 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.833;QD=23.79;ReadPosRankSum=1.706;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3173,354,0 chrVII 773198 . A G 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=150;Dels=0.00;FS=6.109;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.476;QD=22.66;ReadPosRankSum=2.301;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3399,381,0 chrVII 773402 . A G 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=18.0442;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=2.234;QD=21.96;ReadPosRankSum=1.241;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:2,112:116:99:2580,288,0 chrVII 773458 . G A 3315.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3315,357,0 chrVII 773492 . T G 3005 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.12;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3038,342,0 chrVII 773594 . C G 2597 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.46;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,117:121:99:2630,303,0 chrVII 773614 . T C 2498 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.48;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2531,291,0 chrVII 773709 . A G 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=120;Dels=0.00;FS=2.779;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.318;QD=22.07;ReadPosRankSum=2.409;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2681,309,0 chrVII 773807 . A G 2853 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=42.12;MQ0=0;QD=23.20;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2886,327,0 chrVII 773833 . A G 2193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=111;Dels=0.00;FS=6.631;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=40.02;MQ0=0;MQRankSum=-1.253;QD=19.76;ReadPosRankSum=2.361;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2226,267,0 chrVII 773834 . A G 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=6.655;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;MQRankSum=-1.162;QD=20.26;ReadPosRankSum=2.404;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2221,264,0 chrVII 773858 . G A 1958 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=20.40;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1991,228,0 chrVII 773895 . T C 1977 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.38;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2010,225,0 chrVII 773955 . T C 1862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=3.872;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;MQRankSum=1.074;QD=18.62;ReadPosRankSum=1.663;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1895,219,0 chrVII 773971 . A T 1662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;MQRankSum=-0.811;QD=17.49;ReadPosRankSum=1.658;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1695,186,0 chrVII 773998 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;QD=13.98;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1445,165,0 chrVII 773999 . A G 1430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=2.926;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=0;MQRankSum=-2.375;QD=14.44;ReadPosRankSum=2.400;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1463,168,0 chrVII 774009 . C T 1353 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=0;QD=13.01;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1386,156,0 chrVII 774012 . C T 1318 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;QD=12.32;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1351,153,0 chrVII 774023 . T A 1355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=7.055;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;MQRankSum=-0.586;QD=13.16;ReadPosRankSum=2.402;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1388,159,0 chrVII 774035 . T C 1378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=115;Dels=0.00;FS=6.609;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=31.91;MQ0=0;MQRankSum=-2.129;QD=11.98;ReadPosRankSum=2.407;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:1411,165,0 chrVII 774039 . C T 1439 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.8558;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=12.96;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1472,168,0 chrVII 774082 . A T 1753 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=1;QD=18.07;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1786,195,0 chrVII 774107 . C T 1954 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=21.24;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1987,219,0 chrVII 774186 . T A 2227 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=24.74;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2260,237,0 chrVII 774230 . T C 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=114;Dels=0.00;FS=3.021;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;MQRankSum=-0.446;QD=21.36;ReadPosRankSum=2.319;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2468,276,0 chrVII 774283 . G T 3300.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=24.26;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3300,351,0 chrVII 774328 . C A 2675 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.06;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2708,303,0 chrVII 774330 . C T 2757 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.54;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2790,297,0 chrVII 774447 . A G 2485 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.06;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2518,285,0 chrVII 774460 . G A 2761 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5981;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.40;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2794,303,0 chrVII 774506 . C T 4287.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.0300;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.55;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4287,465,0 chrVII 774950 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.9937;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=25.03;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3279,357,0 chrVII 775100 . G A 3441.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.6103;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.41;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3441,366,0 chrVII 775197 . C T 3958.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=23.01;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3958,423,0 chrVII 775204 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=164;Dels=0.00;FS=6.658;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.128;QD=21.30;ReadPosRankSum=2.344;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3493,390,0 chrVII 775301 . T C 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.6726;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.147;QD=22.80;ReadPosRankSum=1.687;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3488,390,0 chrVII 776113 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.2854;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.83;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2699,294,0 chrVII 776173 . G A 4070.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.67;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4070,438,0 chrVII 776483 . T C 5618.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=10.3402;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=19.78;SB=-3.332e+03 GT:AD:DP:GQ:PL 1/1:0,282:284:99:5618,627,0 chrVII 776488 . A G 5487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=3.7681;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=0.495;QD=19.39;ReadPosRankSum=1.695;SB=-3.431e+03 GT:AD:DP:GQ:PL 1/1:1,279:283:99:5487,606,0 chrVII 776502 . G A 4799.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=19.12;SB=-3.120e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:4799,514,0 chrVII 777846 . A G 1336 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=19.65;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1369,150,0 chrVII 777866 . A T 1069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=5.582;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;MQRankSum=-0.332;QD=22.74;ReadPosRankSum=1.659;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1102,120,0 chrVII 777919 . G C 1127 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;QD=18.48;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1160,138,0 chrVII 777929 . G C 1087 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.51;MQ0=0;QD=18.12;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1120,132,0 chrVII 777949 . A G 1227 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.64;MQ0=0;QD=17.53;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1260,144,0 chrVII 777954 . G A 1143 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=0;QD=17.32;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1176,135,0 chrVII 777959 . T G 1094 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=2.658;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.54;MQ0=0;MQRankSum=-0.497;QD=16.33;ReadPosRankSum=2.340;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1127,132,0 chrVII 777976 . A G 1241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.01;FS=3.949;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=40.99;MQ0=0;MQRankSum=1.010;QD=17.00;ReadPosRankSum=1.684;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1274,144,0 chrVII 778045 . C T 1910 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.79;MQ0=0;QD=23.29;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1943,210,0 chrVII 778066 . A T 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=64.5109;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;QD=0.21;SB=-6.718e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:6:46,6,0 chrVII 778087 . C A 1809 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;QD=21.80;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1842,204,0 chrVII 778108 . T C 1660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=91;Dels=0.00;FS=6.166;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;MQRankSum=-0.880;QD=18.24;ReadPosRankSum=2.396;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1693,201,0 chrVII 778136 . A T 1973 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=20.34;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2006,225,0 chrVII 778162 . T A 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=112;Dels=0.00;FS=5.987;HaplotypeScore=7.2187;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;MQRankSum=-1.406;QD=19.66;ReadPosRankSum=2.847;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2235,243,0 chrVII 778255 . T A 2498 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.02;FS=0.000;HaplotypeScore=17.8890;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=21.72;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2531,267,0 chrVII 778257 . A G 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=117;Dels=0.00;FS=8.966;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=0.789;QD=20.46;ReadPosRankSum=2.345;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2427,276,0 chrVII 778287 . T C 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;MQRankSum=-1.699;QD=18.52;ReadPosRankSum=1.699;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1996,225,0 chrVII 778290 . T G 2000 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=18.69;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2033,225,0 chrVII 778326 . G T 1822 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=18.78;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1855,204,0 chrVII 778489 . T C 3356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.445;QD=22.99;ReadPosRankSum=1.708;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3356,381,0 chrVII 778561 . G A 2463 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=23.02;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2496,267,0 chrVII 778614 . T C 2039 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=19.24;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2072,228,0 chrVII 778618 . T C 1945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=108;Dels=0.00;FS=4.530;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=0.445;QD=18.01;ReadPosRankSum=1.666;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,104:108:99:1978,228,0 chrVII 778637 . C G 2304 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=19.36;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,115:119:99:2337,258,0 chrVII 778789 . G A 2409 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=9.9788;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=24.84;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2442,255,0 chrVII 778826 . T C 1715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;DP=83;Dels=0.01;FS=5.692;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=37.39;MQ0=0;MQRankSum=-0.617;QD=20.66;ReadPosRankSum=2.717;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1748,201,0 chrVII 778828 . A C 1918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=3.680;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=38.18;MQ0=0;MQRankSum=-1.443;QD=22.83;ReadPosRankSum=1.691;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1951,222,0 chrVII 778881 . T C 2176 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=40.34;MQ0=0;QD=20.34;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2209,246,0 chrVII 778888 . C T 2116 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=0;QD=21.16;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2149,231,0 chrVII 778989 . A T 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.300;DP=8;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.23;MQ0=1;MQRankSum=1.754;QD=2.11;ReadPosRankSum=0.000;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:4,4:8:6:48,6,0 chrVII 778997 . C T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.550;DP=8;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.23;MQ0=1;MQRankSum=1.754;QD=2.72;ReadPosRankSum=0.550;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:4,4:8:6:53,6,0 chrVII 778998 . C A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.754;DP=8;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.23;MQ0=1;MQRankSum=1.754;QD=3.22;ReadPosRankSum=1.300;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:4,4:8:6:57,6,0 chrVII 779003 . A G 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=9;Dels=0.00;FS=9.700;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.23;MQ0=1;MQRankSum=1.920;QD=2.86;ReadPosRankSum=1.221;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:4,5:9:6:57,6,0 chrVII 779004 . T A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.517;DP=9;Dels=0.00;FS=9.700;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.23;MQ0=1;MQRankSum=1.920;QD=2.86;ReadPosRankSum=1.221;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:4,5:9:6:57,6,0 chrVII 779010 . C T 53.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=10;Dels=0.00;FS=10.792;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.00;MQ0=1;MQRankSum=2.054;QD=5.40;ReadPosRankSum=1.683;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:4,6:10:9:86,9,0 chrVII 779014 . A T 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=9;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.06;MQ0=1;MQRankSum=1.589;QD=5.33;ReadPosRankSum=1.589;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:3,6:9:9:80,9,0 chrVII 779016 . T C 53.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.32;MQ0=1;MQRankSum=0.742;QD=6.75;ReadPosRankSum=0.742;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:2,6:8:9:86,9,0 chrVII 779020 . T C 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=1;QD=6.85;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:80,9,0 chrVII 779021 . G A 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=1;QD=7.14;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:1,6:7:9:82,9,0 chrVII 779024 . G T 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=1;QD=5.75;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:1,7:8:9:78,9,0 chrVII 779029 . C A 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=2.9800;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=1;QD=6.37;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:1,7:8:9:83,9,0 chrVII 779032 . C T 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=2.9800;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=1;QD=5.12;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:1,7:8:9:73,9,0 chrVII 779120 . T C 94.26 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=4.28;SB=-4.727e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:15:127,15,0 chrVII 779127 . A G 244 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=9.04;SB=-4.702e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:30:277,30,0 chrVII 779132 . G A 224 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=8.00;SB=-5.502e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:30:257,30,0 chrVII 779150 . C T 448 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=16.59;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:51:481,51,0 chrVII 779161 . G A 410 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=16.40;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:48:443,48,0 chrVII 779172 . C T 554 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.81;MQ0=0;QD=16.79;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:63:587,63,0 chrVII 779180 . T G 521 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.20;MQ0=0;QD=17.37;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:63:554,63,0 chrVII 779185 . C T 587 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=0;QD=17.79;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:75:620,75,0 chrVII 779229 . T C 998 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.83;MQ0=0;QD=20.79;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1031,117,0 chrVII 779235 . T A 997 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;QD=21.67;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1030,114,0 chrVII 779264 . A G 868 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.60;MQ0=0;QD=21.70;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:99:901,105,0 chrVII 779319 . C T 106.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=15.18;SB=-2.776e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:139,15,0 chrVII 779320 . T C 99.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=14.18;SB=-2.576e+01 GT:AD:DP:GQ:PL 1/1:0,6:7:15:132,15,0 chrVII 779356 . T C 549 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.25;MQ0=0;QD=10.56;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:63:582,63,0 chrVII 779385 . T C 1070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=-1.237;QD=18.45;ReadPosRankSum=1.670;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1103,123,0 chrVII 779446 . A G 2267 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=21.19;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2300,273,0 chrVII 779458 . T C 2417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=-0.925;QD=21.20;ReadPosRankSum=2.384;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2450,273,0 chrVII 779554 . G A 2285 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=36.37;MQ0=0;QD=22.40;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2318,258,0 chrVII 779581 . G T 2097 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.84;MQ0=0;QD=23.04;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2130,246,0 chrVII 779595 . T C 1978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=93;Dels=0.00;FS=11.236;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;MQRankSum=0.878;QD=21.27;ReadPosRankSum=2.878;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:3,88:93:99:2011,240,0 chrVII 779598 . A G 2151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;MQRankSum=0.139;QD=21.51;ReadPosRankSum=1.524;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2184,258,0 chrVII 779721 . T C 2129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.01;FS=6.507;HaplotypeScore=17.5563;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;MQRankSum=-0.420;QD=17.60;ReadPosRankSum=2.388;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2162,249,0 chrVII 779747 . T G 1830 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=42.97;MQ0=0;QD=16.34;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1863,216,0 chrVII 779766 . T G 1484 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=38.76;MQ0=0;QD=14.69;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1517,177,0 chrVII 779781 . C T 1066 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=55.0910;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;QD=13.67;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1099,123,0 chrVII 779803 . A G 863 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.15;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:896,108,0 chrVII 779827 . A C 724 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=0;QD=12.27;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:87:757,87,0 chrVII 779835 . T C 678 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=50.3313;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;QD=11.89;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:81:711,81,0 chrVII 779908 . A T 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.857;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;MQRankSum=0.367;QD=19.32;ReadPosRankSum=1.662;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1946,207,0 chrVII 779916 . C T 2024 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=20.65;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2057,219,0 chrVII 780023 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=19.12;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1352,147,0 chrVII 780034 . A T 1188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;MQRankSum=-0.624;QD=15.84;ReadPosRankSum=1.270;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1221,135,0 chrVII 780035 . G A 1186 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;QD=15.81;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1219,138,0 chrVII 780103 . C T 1804 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=21.22;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1837,198,0 chrVII 780153 . C T 197.01 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=67.8825;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;QD=2.16;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:27:230,27,0 chrVII 780207 . G A 1528 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.38;MQ0=0;QD=17.56;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1561,171,0 chrVII 780213 . T G 1400 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;QD=16.67;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1433,168,0 chrVII 780220 . C T 1390 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;QD=16.55;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1423,156,0 chrVII 780279 . C G 1609 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=19.86;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1642,192,0 chrVII 780280 . C G 1656 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=21.23;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1689,189,0 chrVII 780295 . T A 1689 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.03;FS=0.000;HaplotypeScore=10.3990;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=19.64;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1722,189,0 chrVII 780373 . A G 1581 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.9827;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;QD=14.50;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1614,180,0 chrVII 780388 . T C 1395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=102.1512;MLEAC=2;MLEAF=1.00;MQ=39.91;MQ0=0;MQRankSum=-1.675;QD=10.98;ReadPosRankSum=2.333;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:2,125:127:99:1428,162,0 chrVII 780500 . T C 3059 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=20.39;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3092,348,0 chrVII 780518 . T C 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.401;DP=155;Dels=0.00;FS=4.956;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;MQRankSum=-1.617;QD=18.79;ReadPosRankSum=3.390;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:4,148:155:99:2945,336,0 chrVII 780617 . G C 4060.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=19.52;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4060,465,0 chrVII 780725 . T A 4495.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.242;DP=218;Dels=0.00;FS=12.829;HaplotypeScore=7.4872;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;MQRankSum=-0.900;QD=20.62;ReadPosRankSum=3.404;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:4,212:218:99:4495,483,0 chrVII 780728 . T C 4265.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=219;Dels=0.00;FS=3.050;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;MQRankSum=-0.222;QD=19.47;ReadPosRankSum=1.716;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:4265,480,0 chrVII 780734 . A G 4200.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;MQRankSum=-1.099;QD=19.09;ReadPosRankSum=1.685;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:4200,480,0 chrVII 780980 . G A 6888.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=8.2379;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=22.73;SB=-3.426e+03 GT:AD:DP:GQ:PL 1/1:0,302:303:99:6888,745,0 chrVII 780998 . C T 6653.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=8.9833;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.96;SB=-3.923e+03 GT:AD:DP:GQ:PL 1/1:0,303:303:99:6653,718,0 chrVII 781040 . A T 6904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-1.157;QD=21.92;ReadPosRankSum=1.721;SB=-3.993e+03 GT:AD:DP:GQ:PL 1/1:1,314:315:99:6904,751,0 chrVII 781239 . G T 4477.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=18.8501;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.02;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4477,466,0 chrVII 781379 . G A 3022 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.8332;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.90;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3055,330,0 chrVII 781556 . T C 1827 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=22.84;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1860,204,0 chrVII 781580 . A G 1278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=74;Dels=0.00;FS=3.070;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;MQRankSum=-1.683;QD=17.27;ReadPosRankSum=2.317;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1311,150,0 chrVII 781585 . A T 1061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=69;Dels=0.00;FS=3.337;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;MQRankSum=-0.477;QD=15.38;ReadPosRankSum=1.682;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1094,123,0 chrVII 781593 . C T 1036 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;QD=15.94;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1069,114,0 chrVII 781621 . C T 1105 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=16.49;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1138,120,0 chrVII 781787 . C T 2701 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=24.12;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2734,291,0 chrVII 781934 . C T 3652.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=25.19;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3652,387,0 chrVII 781952 . T C 3525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=160;Dels=0.00;FS=2.728;HaplotypeScore=8.9341;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.363;QD=22.03;ReadPosRankSum=2.403;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3525,393,0 chrVII 782072 . G T 3359.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.54;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3359,363,0 chrVII 782249 . G A 3550.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.83;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3550,384,0 chrVII 782600 . T C 4664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.9715;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=1.397;QD=21.39;ReadPosRankSum=1.716;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:4664,513,0 chrVII 782618 . C T 4744.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.1076;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.81;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4744,522,0 chrVII 783224 . T C 4560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.331;QD=24.00;ReadPosRankSum=1.714;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4560,522,0 chrVII 783787 . A C 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=155;Dels=0.00;FS=2.829;HaplotypeScore=7.8574;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=0.199;QD=21.49;ReadPosRankSum=2.402;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3331,375,0 chrVII 783795 . A G 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.561;QD=20.54;ReadPosRankSum=1.659;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2949,339,0 chrVII 783845 . C T 2808 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.44;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2841,306,0 chrVII 783956 . A G 2289 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=21.59;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2322,261,0 chrVII 783979 . T C 1524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=3.303;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=0.113;QD=16.57;ReadPosRankSum=1.694;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1557,180,0 chrVII 783986 . G A 1612 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=6.0064;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=16.97;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1645,174,0 chrVII 784133 . C T 1297 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.6891;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=12.12;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1330,147,0 chrVII 784161 . T G 2558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=17.3446;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=-0.439;QD=17.05;ReadPosRankSum=1.709;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2591,291,0 chrVII 784197 . A G 4351.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.90;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4351,480,0 chrVII 784337 . A G 5437.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.7653;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=24.71;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5437,600,0 chrVII 784385 . G A 6164.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.98;SB=-2.980e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:6164,672,0 chrVII 784449 . T C 4826.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.2791;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.45;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4826,534,0 chrVII 784602 . G A 3529.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.07;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3529,378,0 chrVII 785199 . C T 2803 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.98;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2836,312,0 chrVII 785244 . A T 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.369;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.275;QD=22.56;ReadPosRankSum=1.705;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2875,309,0 chrVII 785851 . A G 4200.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.19;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4200,480,0 chrVII 786402 . C T 8673.01 filter AC=2;AF=1.00;AN=2;DP=391;Dels=0.00;FS=0.000;HaplotypeScore=23.9279;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.18;SB=-4.774e+03 GT:AD:DP:GQ:PL 1/1:0,391:391:99:8673,931,0 chrVII 786618 . A G 6271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=279;Dels=0.00;FS=2.572;HaplotypeScore=14.1781;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.585;QD=22.48;ReadPosRankSum=2.946;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:3,275:279:99:6271,696,0 chrVII 786747 . G A 4058.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=24.45;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4058,438,0 chrVII 786802 . G A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.6353;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.74;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3822,403,0 chrVII 786930 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.39;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3509,390,0 chrVII 786968 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=23.43;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3265,348,0 chrVII 786976 . C A 2912 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.40;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2945,330,0 chrVII 787056 . A T 2238 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.2346;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.33;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2271,246,0 chrVII 787086 . C A 1990 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.87;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2023,222,0 chrVII 787107 . T C 1881 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.67;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1914,213,0 chrVII 787264 . T C 2041 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.71;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2074,231,0 chrVII 787546 . C T 4107.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4107,441,0 chrVII 787750 . G A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.19;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3376,357,0 chrVII 788007 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.1308;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.93;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3440,363,0 chrVII 788060 . C T 3042 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=13.9925;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.20;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3075,330,0 chrVII 788757 . T C 3314.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.2441;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.97;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3314,378,0 chrVII 789189 . T C 2952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=139;Dels=0.00;FS=6.504;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.274;QD=21.24;ReadPosRankSum=2.414;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2985,345,0 chrVII 789273 . A G 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.126;DP=130;Dels=0.00;FS=3.044;HaplotypeScore=5.1629;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.804;QD=23.37;ReadPosRankSum=1.958;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3071,345,0 chrVII 789318 . G A 2858 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.8164;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.43;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2891,318,0 chrVII 789426 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.77;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3304,345,0 chrVII 789460 . C T 3142 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=14.1820;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.37;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3175,342,0 chrVII 789498 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.70;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3159,336,0 chrVII 789513 . C T 3437.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.17;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3437,363,0 chrVII 789553 . C T 4170.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.79;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4170,442,0 chrVII 789609 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.89;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3460,390,0 chrVII 789612 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=19.35;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3308,375,0 chrVII 789681 . A C 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=3.327;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=1.317;QD=19.64;ReadPosRankSum=1.708;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2822,318,0 chrVII 789735 . C T 3400.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.73;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3400,378,0 chrVII 789939 . C T 3287.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=25.09;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3287,363,0 chrVII 789975 . A G 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=116;Dels=0.00;FS=7.643;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-1.380;QD=23.98;ReadPosRankSum=2.343;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2815,318,0 chrVII 790041 . A G 2846 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2879,324,0 chrVII 790122 . G A 3443.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=23.74;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3443,369,0 chrVII 790173 . T G 2344 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.398;DP=140;Dels=0.00;FS=18.429;HaplotypeScore=14.6847;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;MQRankSum=-0.268;QD=16.74;ReadPosRankSum=4.379;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:7,133:140:99:2377,264,0 chrVII 790175 . G A 2168 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=141;Dels=0.02;FS=6.105;HaplotypeScore=10.7960;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=-0.584;QD=15.38;ReadPosRankSum=2.686;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:2201,249,0 chrVII 790176 . A T 2133 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.848;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.7960;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=-1.983;QD=15.02;ReadPosRankSum=3.818;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:6,136:142:99:2166,246,0 chrVII 790249 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=20.21;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2903,312,0 chrVII 790683 . G A 3952.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.40;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3952,420,0 chrVII 790909 . T C 4649.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.8695;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4649,528,0 chrVII 791141 . A G 3467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=15.7031;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.557;QD=21.40;ReadPosRankSum=1.688;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,157:162:99:3467,405,0 chrVII 791259 . C T 3090 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.33;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3123,330,0 chrVII 791316 . T A 2688 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2721,288,0 chrVII 791799 . G A 4368.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.00;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4368,468,0 chrVII 791920 . A G 3663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=168;Dels=0.00;FS=2.954;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.611;QD=21.80;ReadPosRankSum=2.405;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3663,411,0 chrVII 793300 . C T 4888.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.06;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4888,540,0 chrVII 793351 . G A 5133.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.5313;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.02;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5133,564,0 chrVII 793393 . G A 4707.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.85;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4707,519,0 chrVII 793442 . T G 4589.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.90;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4589,516,0 chrVII 793646 . G T 3394.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3394,363,0 chrVII 795469 . T C 3095 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7338;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.20;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3128,360,0 chrVII 795501 . A G 3558.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.4423;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.56;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3558,399,0 chrVII 795731 . T C 4147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.268;QD=23.04;ReadPosRankSum=1.713;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4147,462,0 chrVII 795807 . G C 3130 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3163,357,0 chrVII 795876 . T G 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=4.847;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.105;QD=22.82;ReadPosRankSum=1.702;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2703,303,0 chrVII 795913 . G A 3661.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.62;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3661,396,0 chrVII 795956 . T C 3777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=172;Dels=0.00;FS=4.848;HaplotypeScore=8.1747;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.590;QD=21.96;ReadPosRankSum=1.712;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3777,420,0 chrVII 796217 . T G 3446.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.23;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3446,378,0 chrVII 796304 . G A 4001.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4001,444,0 chrVII 797305 . T C 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-1.177;QD=21.38;ReadPosRankSum=1.665;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,155:159:99:3399,381,0 chrVII 797326 . A G 2851 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=17.93;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2884,330,0 chrVII 797329 . C T 2674 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=17.03;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2707,300,0 chrVII 797633 . C A 3165 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.83;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3198,357,0 chrVII 797707 . T C 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=4.486;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.057;QD=21.86;ReadPosRankSum=1.673;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2613,297,0 chrVII 797870 . G C 3566.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.1311;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.26;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3566,399,0 chrVII 797918 . C T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.80;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3328,360,0 chrVII 799613 . G A 5898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=256;Dels=0.00;FS=3.937;HaplotypeScore=12.2064;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.251;QD=23.04;ReadPosRankSum=-1.162;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:1,254:256:99:5898,634,0 chrVII 799934 . T C 3211.99 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.45;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3245,363,0 chrVII 800061 . G A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3527,375,0 chrVII 800761 . T C 2642 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.18;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2675,297,0 chrVII 801868 . G A 3881.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.9816;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3881,426,0 chrVII 802512 . G A 2606 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.90;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2639,285,0 chrVII 802550 . A G 2193 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.31;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2226,252,0 chrVII 802559 . C G 2345 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=19.71;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2378,273,0 chrVII 802624 . C T 2746 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.80;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2779,300,0 chrVII 802876 . T C 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.445;QD=24.37;ReadPosRankSum=1.600;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2592,285,0 chrVII 802907 . G A 2503 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.30;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2536,276,0 chrVII 803612 . C T 3061 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.71;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3094,333,0 chrVII 803618 . T C 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=135;Dels=0.00;FS=3.680;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.117;QD=20.02;ReadPosRankSum=1.680;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2736,315,0 chrVII 804812 . A G 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=160;Dels=0.00;FS=3.038;HaplotypeScore=12.6319;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.599;QD=22.09;ReadPosRankSum=1.710;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3534,405,0 chrVII 807532 . G T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.01;FS=0.000;HaplotypeScore=14.9557;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.71;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3665,387,0 chrVII 807533 . A C 3497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=181;Dels=0.01;FS=2.851;HaplotypeScore=17.8302;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=0.213;QD=19.32;ReadPosRankSum=2.326;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3497,396,0 chrVII 807662 . T A 3752.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.88;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3752,414,0 chrVII 807765 . G T 2947 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.39;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2980,324,0 chrVII 808336 . T C 1917 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1950,231,0 chrVII 808820 . G A 5809.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.34;SB=-3.192e+03 GT:AD:DP:GQ:PL 1/1:1,257:260:99:5809,630,0 chrVII 809259 . C A 4615.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4615,501,0 chrVII 810523 . T C 3628.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=19.1033;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.42;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3628,414,0 chrVII 810902 . C T 2581 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=19.85;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2614,285,0 chrVII 810913 . C A 2739 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7761;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=19.99;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2772,294,0 chrVII 811167 . G C 4204.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.5168;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.36;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4204,486,0 chrVII 811620 . T C 24.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.26;MQ0=69;MQRankSum=0.727;QD=0.34;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:55,18:73:6:56,6,0 chrVII 823554 . C A 2767 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=122.4229;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=19.22;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2800,315,0 chrVII 823611 . T G 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4803;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-0.701;QD=18.79;ReadPosRankSum=2.231;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:2,134:139:99:2645,300,0 chrVII 823615 . T C 2671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.3892;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-1.172;QD=19.50;ReadPosRankSum=1.681;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2704,300,0 chrVII 823674 . A G 3019 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8967;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.04;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3052,345,0 chrVII 824079 . C A 6037.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=9.0454;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.64;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:6037,649,0 chrVII 824136 . C T 5431.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.26;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5431,577,0 chrVII 824168 . C A 5128.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.31;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5128,547,0 chrVII 825462 . G A 4801.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=16.8383;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4801,522,0 chrVII 826599 . G A 4517.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.3200;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.90;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4517,483,0 chrVII 827509 . G C 3141 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3174,357,0 chrVII 827544 . C T 3453.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3453,381,0 chrVII 827791 . C T 3620.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.35;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3620,393,0 chrVII 827996 . T C 2716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=4.512;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=1.013;QD=20.73;ReadPosRankSum=1.705;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2749,306,0 chrVII 828031 . C T 2588 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.0457;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=18.23;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2621,282,0 chrVII 828034 . C T 2543 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2564;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=17.42;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2576,276,0 chrVII 828517 . A G 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=155;Dels=0.00;FS=2.998;HaplotypeScore=9.7818;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.262;QD=22.39;ReadPosRankSum=2.386;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3471,387,0 chrVII 828816 . A T 2218 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.92;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2251,249,0 chrVII 828825 . T C 1977 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=20.59;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2010,225,0 chrVII 828863 . C A 1597 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=18.79;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1630,174,0 chrVII 828880 . A G 1604 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=18.87;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1637,183,0 chrVII 829194 . T G 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.936;QD=21.76;ReadPosRankSum=1.638;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3254,381,0 chrVII 829589 . C T 3572.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.47;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3572,381,0 chrVII 829617 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.48;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3304,363,0 chrVII 829683 . A G 3187 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.61;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3220,363,0 chrVII 829847 . C T 3838.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=15.3073;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.14;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3838,408,0 chrVII 829946 . G C 2971 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3004,342,0 chrVII 829998 . A G 2972 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.5010;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.23;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3005,342,0 chrVII 830083 . G A 3761.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.80;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3761,408,0 chrVII 830281 . G A 2484 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.58;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2517,279,0 chrVII 830676 . G A 3015 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.0744;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.50;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3048,321,0 chrVII 830690 . T C 2667 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=20.36;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2700,303,0 chrVII 830766 . A C 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-1.146;QD=19.06;ReadPosRankSum=1.679;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2511,282,0 chrVII 830771 . G A 2517 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.30;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2550,276,0 chrVII 830787 . C T 2026 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=18.76;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2059,219,0 chrVII 830921 . A G 2544 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.56;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2577,288,0 chrVII 830992 . G A 2271 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.49;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2304,252,0 chrVII 831041 . A G 3345.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.3416;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.42;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3345,372,0 chrVII 831108 . G A 2597 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.78;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2630,282,0 chrVII 831241 . C T 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.3589;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.262;QD=24.36;ReadPosRankSum=-0.099;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3435,366,0 chrVII 831291 . G A 3922.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.21;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3922,438,0 chrVII 831330 . C T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.2952;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.31;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4375,471,0 chrVII 831597 . C T 4210.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.37;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4210,468,0 chrVII 831698 . G C 3695.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.1829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,170:175:99:3695,417,0 chrVII 831961 . C T 3102 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.1163;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.43;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3135,336,0 chrVII 832073 . C T 3121 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.95;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3154,339,0 chrVII 832077 . T C 2899 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.80;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2932,327,0 chrVII 832116 . T C 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=141;Dels=0.00;FS=12.320;HaplotypeScore=14.8226;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.086;QD=20.26;ReadPosRankSum=2.950;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:2889,324,0 chrVII 832207 . G A 2832 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2865,306,0 chrVII 832415 . G A 3270.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.1655;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3270,348,0 chrVII 832683 . A G 4558.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.7226;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.79;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4558,525,0 chrVII 832717 . T C 4839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=234;Dels=0.00;FS=3.015;HaplotypeScore=14.6158;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-1.036;QD=20.68;ReadPosRankSum=2.428;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:2,230:234:99:4839,546,0 chrVII 832890 . A G 4050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=188;Dels=0.00;FS=5.548;HaplotypeScore=14.3900;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.242;QD=21.54;ReadPosRankSum=2.909;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:3,184:188:99:4050,456,0 chrVII 833104 . C T 3482.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.01;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3482,372,0 chrVII 833158 . A C 3297.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=24.42;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3297,363,0 chrVII 833212 . C T 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.764;QD=21.83;ReadPosRankSum=1.554;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3024,324,0 chrVII 833214 . T C 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=5.582;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.233;QD=19.80;ReadPosRankSum=1.708;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2844,321,0 chrVII 833472 . G A 2303 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.03;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2336,264,0 chrVII 833529 . C T 3090 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1156;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.54;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3123,333,0 chrVII 833796 . G A 2497 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.56;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2530,270,0 chrVII 834212 . T A 2185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=94;Dels=0.00;FS=3.007;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.721;QD=23.24;ReadPosRankSum=2.266;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2218,237,0 chrVII 834267 . G A 2887 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=12.1046;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.91;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2920,321,0 chrVII 834807 . T C 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.280;QD=22.93;ReadPosRankSum=1.707;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3198,360,0 chrVII 834860 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=18.2611;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3392,381,0 chrVII 834928 . T C 4567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.647;QD=22.72;ReadPosRankSum=1.697;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:4567,501,0 chrVII 835147 . T C 4563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=194;Dels=0.00;FS=6.460;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.635;QD=23.52;ReadPosRankSum=2.424;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4563,510,0 chrVII 835248 . T C 5895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=267;Dels=0.00;FS=10.050;HaplotypeScore=21.0501;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.447;QD=22.08;ReadPosRankSum=2.906;SB=-3.041e+03 GT:AD:DP:GQ:PL 1/1:3,264:267:99:5895,654,0 chrVII 835531 . C T 4237.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.18;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,187:191:99:4237,451,0 chrVII 835894 . T G 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=144;Dels=0.00;FS=4.508;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.217;QD=21.03;ReadPosRankSum=1.708;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3062,339,0 chrVII 836201 . T G 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.558;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.231;QD=22.66;ReadPosRankSum=1.667;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3603,383,0 chrVII 836443 . T C 3953.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.0404;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.59;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3953,444,0 chrVII 836910 . A G 1436 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=16.89;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1469,171,0 chrVII 837183 . G A 2832 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.84;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2865,303,0 chrVII 837339 . C T 2717 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2750,297,0 chrVII 837417 . T C 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=149;Dels=0.00;FS=2.975;HaplotypeScore=12.7636;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.473;QD=21.44;ReadPosRankSum=2.367;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3228,363,0 chrVII 837489 . G C 3022 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.5036;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.01;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3055,342,0 chrVII 837741 . A G 2953 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.07;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2986,342,0 chrVII 837778 . G A 3397.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3397,366,0 chrVII 837909 . C T 4268.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.9517;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.58;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4268,477,0 chrVII 838145 . A G 3873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.9005;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.215;QD=21.28;ReadPosRankSum=1.694;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3873,426,0 chrVII 838381 . G A 3677.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.72;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3677,396,0 chrVII 838472 . A T 4064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=180;Dels=0.00;FS=5.220;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=1.051;QD=22.58;ReadPosRankSum=2.961;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:4064,438,0 chrVII 838490 . T C 4091.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=22.23;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4091,453,0 chrVII 838500 . A C 4115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=0.354;QD=21.21;ReadPosRankSum=1.714;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:1,190:194:99:4115,474,0 chrVII 838632 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=141;Dels=0.00;FS=3.468;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.064;QD=22.77;ReadPosRankSum=1.683;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3243,369,0 chrVII 838743 . G A 2852 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.1805;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.19;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2885,309,0 chrVII 839088 . G A 4590.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.41;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4590,487,0 chrVII 839538 . T A 3188 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.45;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3221,357,0 chrVII 839652 . C T 1831 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.06;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1864,204,0 chrVII 839712 . G A 1927 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.67;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1960,210,0 chrVII 839937 . G A 2481 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.19;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2514,270,0 chrVII 840315 . C T 3963.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.77;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3963,429,0 chrVII 840622 . A G 1641 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=15.48;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1674,195,0 chrVII 840681 . G A 2881 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.33;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2914,315,0 chrVII 840852 . T G 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-1.732;QD=22.77;ReadPosRankSum=1.706;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3038,342,0 chrVII 841031 . G C 3562.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.4991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3562,402,0 chrVII 841068 . T G 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=3.228;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.199;QD=22.29;ReadPosRankSum=1.659;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3220,357,0 chrVII 841169 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.09;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3068,327,0 chrVII 841352 . A G 2763 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=18.92;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2796,315,0 chrVII 841664 . T C 4760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.401;DP=262;Dels=0.00;FS=13.996;HaplotypeScore=5.0314;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=0.030;QD=18.17;ReadPosRankSum=2.905;SB=-3.037e+03 GT:AD:DP:GQ:PL 1/1:4,256:262:99:4760,534,0 chrVII 841665 . C T 4984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=265;Dels=0.00;FS=3.461;HaplotypeScore=4.2427;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-1.561;QD=18.81;ReadPosRankSum=1.614;SB=-3.218e+03 GT:AD:DP:GQ:PL 1/1:1,263:265:99:4984,546,0 chrVII 841693 . A G 5560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=10.3950;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-1.468;QD=20.07;ReadPosRankSum=1.719;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:1,274:277:99:5560,624,0 chrVII 842090 . G A 2923 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2956,330,0 chrVII 842206 . T C 3780.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.60;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3780,423,0 chrVII 842218 . T C 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=184;Dels=0.00;FS=9.247;HaplotypeScore=8.6828;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.689;QD=20.67;ReadPosRankSum=2.962;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:3804,438,0 chrVII 842447 . G A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8061;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=23.45;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3846,420,0 chrVII 842495 . C T 4505.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.2020;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=22.41;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4505,486,0 chrVII 842514 . T C 3611.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=20.06;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3611,396,0 chrVII 842531 . C T 3296.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.9226;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=17.08;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:3296,369,0 chrVII 842565 . C T 2845 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;QD=17.14;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:2878,318,0 chrVII 842582 . T G 2319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=150;Dels=0.00;FS=6.603;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;MQRankSum=-0.928;QD=15.46;ReadPosRankSum=2.399;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:2,145:150:99:2352,276,0 chrVII 842585 . T C 2415 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=16.32;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2448,273,0 chrVII 842605 . A C 2602 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=17.70;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2635,291,0 chrVII 842712 . A G 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=175;Dels=0.00;FS=3.597;HaplotypeScore=9.8411;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=0.119;QD=21.94;ReadPosRankSum=1.692;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3840,441,0 chrVII 842947 . T C 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.153;DP=152;Dels=0.00;FS=7.110;HaplotypeScore=16.7122;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.140;QD=22.29;ReadPosRankSum=2.400;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,147:152:99:3388,381,0 chrVII 843110 . G A 2671 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2704,288,0 chrVII 843276 . G A 2605 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.65;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2638,282,0 chrVII 843390 . G C 3475.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.13;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3475,393,0 chrVII 843706 . G A 3428.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.97;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3428,363,0 chrVII 843717 . T C 3096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=159;Dels=0.01;FS=6.804;HaplotypeScore=6.6361;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.337;QD=19.47;ReadPosRankSum=2.371;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3129,360,0 chrVII 844054 . T C 3592.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3592,405,0 chrVII 844261 . A C 3017 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3050,345,0 chrVII 844451 . T C 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.7785;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.586;QD=23.66;ReadPosRankSum=2.271;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3904,435,0 chrVII 844489 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=160;Dels=0.00;FS=2.962;HaplotypeScore=6.5018;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.332;QD=21.93;ReadPosRankSum=2.388;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3509,393,0 chrVII 844768 . A G 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-1.579;QD=21.67;ReadPosRankSum=1.622;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3446,399,0 chrVII 844977 . T C 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=124;Dels=0.00;FS=3.997;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.803;QD=22.06;ReadPosRankSum=1.676;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2768,306,0 chrVII 844986 . C T 2640 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.95;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2673,297,0 chrVII 845122 . C T 2884 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.45;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2917,318,0 chrVII 845298 . G A 2725 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=89.5689;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=24.12;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2758,288,0 chrVII 845584 . T G 1998 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=17.22;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2031,228,0 chrVII 845605 . A G 1168 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=96;Dels=0.00;FS=7.033;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;MQRankSum=-1.655;QD=12.17;ReadPosRankSum=2.398;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1201,135,0 chrVII 845611 . C T 930 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.08;MQ0=0;QD=12.08;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:963,102,0 chrVII 845612 . C T 946 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.08;MQ0=0;QD=12.29;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:979,102,0 chrVII 845614 . C A 947 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=0;QD=12.63;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:980,102,0 chrVII 845775 . T C 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=126;Dels=0.00;FS=3.452;HaplotypeScore=8.0907;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=0.391;QD=22.11;ReadPosRankSum=1.676;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2819,312,0 chrVII 845801 . T C 2705 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=22.54;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2738,312,0 chrVII 845834 . C A 2895 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=20.39;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:2928,315,0 chrVII 845902 . G A 2146 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.6310;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=15.22;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2179,231,0 chrVII 845918 . A C 1849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=4.346;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;MQRankSum=-1.095;QD=13.60;ReadPosRankSum=1.707;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:1882,207,0 chrVII 846025 . C T 4159.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.48;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4159,441,0 chrVII 846115 . G A 3881.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=22.18;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3881,417,0 chrVII 846304 . T C 3221.92 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.06;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3255,366,0 chrVII 846377 . G A 2960 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=19.87;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2993,333,0 chrVII 846385 . A G 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.276;DP=145;Dels=0.00;FS=5.271;HaplotypeScore=3.4373;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=-0.492;QD=18.93;ReadPosRankSum=3.313;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:4,140:145:99:2778,312,0 chrVII 846529 . C T 3735.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=25.76;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3735,399,0 chrVII 846611 . T G 1571 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=19.89;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1604,183,0 chrVII 846613 . A C 1502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;MQRankSum=-1.066;QD=19.26;ReadPosRankSum=1.643;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1535,174,0 chrVII 846634 . A G 1313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;MQRankSum=0.821;QD=17.28;ReadPosRankSum=1.687;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1346,153,0 chrVII 846689 . C T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.12;MQ0=0;QD=0.31;SB=-3.168e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:6:57,6,0 chrVII 846696 . T C 1332 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.97;MQ0=0;QD=15.31;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1365,153,0 chrVII 846715 . T C 1872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=8.873;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;MQRankSum=1.700;QD=17.33;ReadPosRankSum=1.700;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1905,210,0 chrVII 846724 . A G 1787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.62;MQ0=0;MQRankSum=0.308;QD=16.70;ReadPosRankSum=1.700;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1820,204,0 chrVII 846740 . A T 1802 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=0;MQRankSum=0.251;QD=17.50;ReadPosRankSum=2.402;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1835,201,0 chrVII 846741 . A G 1716 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=16.99;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1749,195,0 chrVII 846746 . C T 1628 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=0;QD=15.96;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1661,183,0 chrVII 846750 . G A 1541 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.60;MQ0=0;QD=16.05;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1574,171,0 chrVII 846917 . C T 1749 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=19.22;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1782,189,0 chrVII 846930 . T C 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;MQRankSum=-1.758;QD=16.78;ReadPosRankSum=2.394;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1526,174,0 chrVII 846945 . C T 1784 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;QD=18.98;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1817,198,0 chrVII 846990 . A G 2117 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.16;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2150,240,0 chrVII 847077 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=24.01;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,141:145:99:3481,369,0 chrVII 847143 . G A 3172 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.3397;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.99;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3205,351,0 chrVII 847197 . C T 4398.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=17.4122;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.79;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4398,477,0 chrVII 847338 . T A 4877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.325;DP=198;Dels=0.00;FS=4.915;HaplotypeScore=15.1697;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=0.490;QD=24.63;ReadPosRankSum=3.289;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:4,194:198:99:4877,522,0 chrVII 847392 . A G 5828.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=15.2062;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.91;SB=-2.813e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:5828,681,0 chrVII 847512 . A G 5807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=9.7358;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.766;QD=21.59;ReadPosRankSum=1.719;SB=-3.125e+03 GT:AD:DP:GQ:PL 1/1:1,268:269:99:5807,672,0 chrVII 848688 . A G 3883.01 filter AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3883,435,0 chrVII 849134 . C G 4820.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.31;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4820,546,0 chrVII 849405 . T C 4575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.4891;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.577;QD=20.70;ReadPosRankSum=1.685;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:1,218:221:99:4575,519,0 chrVII 849423 . C T 4423.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.4542;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.57;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4423,495,0 chrVII 849504 . A G 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=154;Dels=0.00;FS=2.642;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.137;QD=20.56;ReadPosRankSum=2.369;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3200,360,0 chrVII 849524 . G C 3456.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.87;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3456,384,0 chrVII 849571 . C G 4551.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.10;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,192:197:99:4551,501,0 chrVII 849600 . A G 4446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-1.226;QD=23.90;ReadPosRankSum=1.695;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4446,507,0 chrVII 849939 . C T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.1550;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.05;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3342,366,0 chrVII 849971 . G C 2957 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.75;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2990,339,0 chrVII 850101 . G A 4141.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.10;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4141,441,0 chrVII 850247 . C G 3013 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.68;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,133:139:99:3046,342,0 chrVII 850402 . G C 4075.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.5086;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.15;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4075,456,0 chrVII 850524 . T C 3726.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.58;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3726,417,0 chrVII 850549 . T C 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=3.750;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=1.461;QD=21.31;ReadPosRankSum=1.711;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3558,408,0 chrVII 850633 . T C 2834 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.63;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2867,315,0 chrVII 850641 . T C 2583 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.34;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2616,294,0 chrVII 851801 . A G 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=4.354;HaplotypeScore=5.8487;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.561;QD=22.90;ReadPosRankSum=1.682;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3216,372,0 chrVII 851908 . A G 2758 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.3871;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.56;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2791,315,0 chrVII 852002 . A G 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.201;QD=20.54;ReadPosRankSum=1.707;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2867,327,0 chrVII 852119 . G A 3114 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.71;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3147,333,0 chrVII 853470 . A G 1940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.9977;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.866;QD=19.21;ReadPosRankSum=1.628;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:1973,222,0 chrVII 853975 . T A 4126.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4126,447,0 chrVII 854068 . G A 4333.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.55;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4333,480,0 chrVII 854779 . G A 3939.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.52;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3939,435,0 chrVII 854830 . G A 4168.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.03;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4168,459,0 chrVII 854879 . T C 4001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.284;QD=23.40;ReadPosRankSum=1.691;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4001,450,0 chrVII 854956 . T C 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=121;Dels=0.00;FS=10.616;HaplotypeScore=7.8811;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.783;QD=19.63;ReadPosRankSum=2.409;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2408,261,0 chrVII 854998 . A G 2011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=-0.478;QD=19.15;ReadPosRankSum=1.666;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2044,231,0 chrVII 855163 . T C 715 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=17.44;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:84:748,84,0 chrVII 855164 . T C 709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=3.340;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-1.733;QD=17.29;ReadPosRankSum=1.648;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:84:742,84,0 chrVII 856706 . A G 8004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=345;Dels=0.00;FS=4.784;HaplotypeScore=19.3503;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.904;QD=23.20;ReadPosRankSum=1.692;SB=-2.918e+03 GT:AD:DP:GQ:PL 1/1:1,343:345:99:8004,883,0 chrVII 857340 . G C 3169 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=18.42;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3202,360,0 chrVII 857343 . G A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.05;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3252,345,0 chrVII 857525 . A G 2896 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.14;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2929,330,0 chrVII 857788 . C T 5010.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.86;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5010,535,0 chrVII 858054 . T G 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=124;Dels=0.00;FS=4.143;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-1.562;QD=19.48;ReadPosRankSum=1.704;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2448,273,0 chrVII 858060 . G A 2587 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9812;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=19.90;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2620,279,0 chrVII 858313 . C T 3412.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0178;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=24.55;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3412,366,0 chrVII 858439 . C T 3809.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.6435;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.96;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3809,420,0 chrVII 858672 . C T 133.06 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=0.99;SB=-8.321e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:21:166,21,0 chrVII 859374 . G A 4913.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.69;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4913,514,0 chrVII 859603 . G A 4403.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.91;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4403,486,0 chrVII 859646 . A G 3336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.691;DP=169;Dels=0.00;FS=5.574;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-0.642;QD=19.74;ReadPosRankSum=2.958;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:3,163:169:99:3336,378,0 chrVII 860597 . C G 3373.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.79;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3373,387,0 chrVII 860945 . G A 4028.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.02;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4028,444,0 chrVII 861074 . G C 3926.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.06;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3926,450,0 chrVII 861203 . A G 4488.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=24.52;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4488,498,0 chrVII 861407 . A G 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;MQRankSum=0.279;QD=20.90;ReadPosRankSum=1.704;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2645,294,0 chrVII 861419 . T G 2339 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=20.16;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2372,267,0 chrVII 861437 . G A 1839 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=17.68;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1872,204,0 chrVII 861578 . T C 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=139;Dels=0.00;FS=5.763;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.689;QD=21.04;ReadPosRankSum=2.819;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2957,333,0 chrVII 861890 . A G 3541.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.55;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3541,399,0 chrVII 861996 . T C 4139.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.49;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4139,459,0 chrVII 862466 . A G 4048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=3.107;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.799;QD=22.12;ReadPosRankSum=1.713;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4048,459,0 chrVII 862549 . A G 3709.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.08;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3709,411,0 chrVII 862853 . C A 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=147;Dels=0.00;FS=3.038;HaplotypeScore=1.9445;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-0.393;QD=19.35;ReadPosRankSum=2.149;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2877,315,0 chrVII 862855 . A G 2740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=147;Dels=0.00;FS=3.024;HaplotypeScore=1.9445;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-0.109;QD=18.64;ReadPosRankSum=2.316;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2773,318,0 chrVII 862868 . A G 2684 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.74;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2717,315,0 chrVII 862964 . G A 3628.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.53;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3628,390,0 chrVII 863057 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.66;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3331,360,0 chrVII 863114 . C T 2878 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.59;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2911,318,0 chrVII 863789 . T A 2514 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.2848;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.31;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2547,276,0 chrVII 863849 . T C 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=3.595;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.364;QD=21.42;ReadPosRankSum=1.674;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2603,303,0 chrVII 864132 . T C 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.210;DP=141;Dels=0.00;FS=14.805;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.813;QD=20.13;ReadPosRankSum=3.309;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:4,137:141:99:2872,324,0 chrVII 864553 . G A 4678.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4678,519,0 chrVII 864602 . T C 4670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.353;QD=23.23;ReadPosRankSum=1.646;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4670,540,0 chrVII 864938 . T C 4009.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.5722;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.04;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4009,450,0 chrVII 865151 . A G 2346 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.2646;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=14.22;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:2379,261,0 chrVII 866222 . T A 2090 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2123,228,0 chrVII 867056 . A G 3850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.278;DP=182;Dels=0.00;FS=3.034;HaplotypeScore=11.1074;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.694;QD=21.15;ReadPosRankSum=0.392;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3850,444,0 chrVII 867128 . T C 4441.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.89;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4441,513,0 chrVII 868268 . G A 3535.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.7096;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.43;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3535,375,0 chrVII 868409 . C A 5437.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=13.3405;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.06;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5437,589,0 chrVII 868460 . T C 4961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=249;Dels=0.00;FS=2.680;HaplotypeScore=15.0739;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.919;QD=19.92;ReadPosRankSum=2.420;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:2,245:249:99:4961,570,0 chrVII 868485 . G A 5466.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=11.4328;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.55;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:5466,594,0 chrVII 869330 . A G 4626.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.72;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4626,525,0 chrVII 869564 . T C 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=157;Dels=0.00;FS=3.017;HaplotypeScore=8.1205;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.714;QD=23.11;ReadPosRankSum=2.387;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3629,417,0 chrVII 870131 . C T 218.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=104;Dels=0.00;FS=2.722;HaplotypeScore=94.2779;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.785;QD=2.10;ReadPosRankSum=-3.582;SB=2.99 GT:AD:DP:GQ:PL 1/1:92,12:104:27:251,27,0 chrVII 870646 . C T 3596.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.8213;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.28;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3596,402,0 chrVII 870793 . C T 2525 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.15;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2558,276,0 chrVII 870916 . A G 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=113;Dels=0.00;FS=3.032;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.664;QD=21.58;ReadPosRankSum=2.384;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2471,276,0 chrVII 871006 . C T 2746 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7931;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.09;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2779,300,0 chrVII 871036 . A G 2666 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.18;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2699,297,0 chrVII 871517 . T C 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;MQRankSum=1.199;QD=23.41;ReadPosRankSum=1.694;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2163,243,0 chrVII 873201 . G A 2760 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.44;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2793,300,0 chrVII 873389 . T C 2493 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.18;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2526,282,0 chrVII 873392 . G A 2453 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.78;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2486,279,0 chrVII 873682 . C A 4682.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=16.9396;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.41;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4682,510,0 chrVII 873790 . C T 5524.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=11.4139;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5524,603,0 chrVII 873895 . G A 5498.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=17.3745;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.81;SB=-3.126e+03 GT:AD:DP:GQ:PL 1/1:0,237:241:99:5498,583,0 chrVII 874013 . C T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.0737;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.37;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3442,369,0 chrVII 874355 . G A 3594.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.80;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3594,387,0 chrVII 874420 . T C 3324.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0991;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.92;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3324,381,0 chrVII 874466 . A T 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=136;Dels=0.00;FS=2.884;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.696;QD=23.35;ReadPosRankSum=2.377;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3209,342,0 chrVII 874608 . G A 2593 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2626,285,0 chrVII 874653 . G A 2866 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2899,306,0 chrVII 875194 . C T 3608.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.8601;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.55;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3608,390,0 chrVII 875340 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.64;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3380,360,0 chrVII 875367 . T C 2978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.6231;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.732;QD=23.09;ReadPosRankSum=1.678;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3011,333,0 chrVII 875517 . T C 2752 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.02;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2785,324,0 chrVII 875639 . G C 3034 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=22.47;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3067,348,0 chrVII 875660 . T C 2851 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=21.28;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2884,324,0 chrVII 875675 . T C 2596 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.81;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2629,300,0 chrVII 875729 . G A 2583 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=20.83;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2616,285,0 chrVII 875843 . T G 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.619;DP=142;Dels=0.00;FS=9.904;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;MQRankSum=1.396;QD=19.15;ReadPosRankSum=2.576;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:3,137:142:99:2752,312,0 chrVII 875845 . A T 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.366;DP=135;Dels=0.00;FS=10.254;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;MQRankSum=1.739;QD=19.73;ReadPosRankSum=2.321;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:2697,291,0 chrVII 876032 . G A 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.078;DP=137;Dels=0.00;FS=15.675;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;MQRankSum=2.951;QD=20.22;ReadPosRankSum=2.841;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:8,129:137:99:2803,309,0 chrVII 876033 . G A 2888 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.7355;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=21.39;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,129:135:99:2921,315,0 chrVII 876057 . T C 2691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.401;DP=136;Dels=0.00;FS=2.833;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;MQRankSum=0.895;QD=19.79;ReadPosRankSum=1.763;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2724,312,0 chrVII 876081 . G A 2664 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6829;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=20.34;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2697,291,0 chrVII 876165 . T A 194.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.659;DP=163;Dels=0.00;FS=50.917;HaplotypeScore=9.3593;MLEAC=1;MLEAF=0.500;MQ=46.13;MQ0=8;MQRankSum=-6.533;QD=1.19;ReadPosRankSum=6.172;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:135,28:163:99:224,0,2585 chrVII 876195 . T A 252.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;DP=154;Dels=0.00;FS=44.017;HaplotypeScore=10.6223;MLEAC=1;MLEAF=0.500;MQ=45.27;MQ0=7;MQRankSum=-6.171;QD=1.64;ReadPosRankSum=-2.042;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:125,29:154:99:282,0,2300 chrVII 876351 . T C 1543 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=23.38;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1576,177,0 chrVII 876381 . C T 1026 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=22.30;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1059,120,0 chrVII 876387 . T C 1014 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=22.53;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1047,117,0 chrVII 876560 . C T 1050 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=12.7007;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.43;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1083,117,0 chrVII 876569 . G A 1151 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.93;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1184,132,0 chrVII 876711 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=0.283;QD=21.74;ReadPosRankSum=2.902;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3326,378,0 chrVII 876736 . A G 4042.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=23.50;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4042,459,0 chrVII 876825 . C T 6104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=256;Dels=0.00;FS=4.737;HaplotypeScore=9.4304;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.487;QD=23.84;ReadPosRankSum=0.095;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:1,255:256:99:6104,655,0 chrVII 876915 . A G 6698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=307;Dels=0.00;FS=9.731;HaplotypeScore=21.7953;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=1.415;QD=21.82;ReadPosRankSum=2.918;SB=-3.480e+03 GT:AD:DP:GQ:PL 1/1:3,304:307:99:6698,747,0 chrVII 876960 . T A 4954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.241;DP=239;Dels=0.00;FS=2.296;HaplotypeScore=11.4658;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=0.312;QD=20.73;ReadPosRankSum=2.903;SB=-2.841e+03 GT:AD:DP:GQ:PL 1/1:3,236:239:99:4954,537,0 chrVII 876965 . T C 3696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=211;Dels=0.00;FS=4.011;HaplotypeScore=11.1704;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=-0.605;QD=17.52;ReadPosRankSum=1.699;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:3696,423,0 chrVII 877198 . G A 244.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.694;DP=227;Dels=0.00;FS=2.437;HaplotypeScore=7.2253;MLEAC=1;MLEAF=0.500;MQ=51.38;MQ0=0;MQRankSum=-2.880;QD=1.07;ReadPosRankSum=-3.892;SB=-5.360e+02 GT:AD:DP:GQ:PL 0/1:152,75:227:99:274,0,2753 chrVII 877206 . G A 477.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.515;DP=231;Dels=0.00;FS=6.462;HaplotypeScore=8.8027;MLEAC=1;MLEAF=0.500;MQ=50.84;MQ0=0;MQRankSum=-2.328;QD=2.06;ReadPosRankSum=-2.304;SB=-6.470e+02 GT:AD:DP:GQ:PL 0/1:140,91:231:99:507,0,2437 chrVII 877209 . C T 434.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.499;DP=230;Dels=0.00;FS=4.569;HaplotypeScore=8.0140;MLEAC=1;MLEAF=0.500;MQ=50.56;MQ0=0;MQRankSum=-3.150;QD=1.89;ReadPosRankSum=-1.973;SB=-7.310e+02 GT:AD:DP:GQ:PL 0/1:132,97:230:99:464,0,2304 chrVII 877245 . C A 774.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.003;DP=257;Dels=0.00;FS=7.781;HaplotypeScore=10.4376;MLEAC=1;MLEAF=0.500;MQ=52.66;MQ0=0;MQRankSum=1.775;QD=3.01;ReadPosRankSum=-6.670;SB=-4.310e+02 GT:AD:DP:GQ:PL 0/1:180,75:257:99:804,0,2127 chrVII 877246 . G A 800.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.767;DP=257;Dels=0.00;FS=5.783;HaplotypeScore=9.6489;MLEAC=1;MLEAF=0.500;MQ=52.66;MQ0=0;MQRankSum=1.409;QD=3.11;ReadPosRankSum=-6.621;SB=-4.900e+02 GT:AD:DP:GQ:PL 0/1:184,72:257:99:830,0,2193 chrVII 877461 . T C 5594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=252;Dels=0.00;FS=2.588;HaplotypeScore=20.6924;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.336;QD=22.20;ReadPosRankSum=2.390;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:2,247:252:99:5594,648,0 chrVII 878298 . G A 3022 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.37;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3055,327,0 chrVII 878359 . A G 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=5.101;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.380;QD=22.60;ReadPosRankSum=1.704;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2835,312,0 chrVII 878510 . C T 2851 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.63;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2884,306,0 chrVII 878666 . T A 2159 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=17.84;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2192,246,0 chrVII 878834 . T C 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=122;Dels=0.00;FS=2.586;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=-0.446;QD=17.67;ReadPosRankSum=2.943;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2189,246,0 chrVII 878835 . A T 2206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=124;Dels=0.00;FS=4.600;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=0.363;QD=17.79;ReadPosRankSum=1.648;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2239,243,0 chrVII 878875 . A T 2813 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=18.63;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2846,306,0 chrVII 878949 . T C 3952.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.66;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3952,450,0 chrVII 878997 . A C 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-0.953;QD=22.28;ReadPosRankSum=2.234;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3365,381,0 chrVII 879079 . A G 3838.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=22.44;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3838,426,0 chrVII 879230 . C T 1535 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.68;MQ0=0;QD=21.62;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1568,168,0 chrVII 879255 . G A 1304 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.64;MQ0=0;QD=21.38;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1337,144,0 chrVII 879340 . C T 1137 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=22.74;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1170,126,0 chrVII 879438 . C T 1511 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=22.55;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1544,168,0 chrVII 879516 . C T 2387 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=25.39;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2420,261,0 chrVII 879687 . T G 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-1.503;QD=22.52;ReadPosRankSum=1.703;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2781,306,0 chrVII 879875 . T C 3405.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=22.11;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3405,393,0 chrVII 879882 . A G 3176 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=21.90;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3209,363,0 chrVII 879907 . T G 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=154;Dels=0.00;FS=6.107;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-0.889;QD=21.43;ReadPosRankSum=2.928;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3300,366,0 chrVII 880132 . T C 2570 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.42;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2603,294,0 chrVII 880473 . C T 4196.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=24.25;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4196,456,0 chrVII 880878 . T C 3839.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.69;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3839,441,0 chrVII 882341 . A T 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.6892;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;MQRankSum=-1.666;QD=23.62;ReadPosRankSum=1.699;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2490,267,0 chrVII 882628 . G A 2049 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.77;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2082,216,0 chrVII 882635 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.03;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1856,195,0 chrVII 882679 . G C 1995 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.92;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2028,228,0 chrVII 883169 . A T 8267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=349;Dels=0.00;FS=4.861;HaplotypeScore=22.0831;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=2;MQRankSum=-0.672;QD=23.69;ReadPosRankSum=1.692;SB=-2.972e+03 GT:AD:DP:GQ:PL 1/1:1,348:349:99:8267,915,0 chrVII 883880 . A C 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.270;QD=23.39;ReadPosRankSum=1.710;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3602,402,0 chrVII 884158 . C T 3497.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3497,369,0 chrVII 884326 . C T 2375 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.84;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2408,264,0 chrVII 885001 . C T 3864.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.08;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3864,417,0 chrVII 885165 . C T 4328.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.78;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4328,474,0 chrVII 885274 . T G 3875.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.8669;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.72;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3875,441,0 chrVII 885330 . C T 3936.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.16;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3936,423,0 chrVII 885450 . C T 4627.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.6209;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.14;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4627,504,0 chrVII 885746 . G A 145.39 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.35;MQ0=0;QD=1.09;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,130:134:21:178,21,0 chrVII 885775 . A G 2539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=142;Dels=0.00;FS=3.038;HaplotypeScore=12.8884;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-1.065;QD=17.88;ReadPosRankSum=2.415;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2572,291,0 chrVII 885963 . G A 3954.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.0003;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=23.26;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3954,429,0 chrVII 886023 . T C 2818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=139;Dels=0.00;FS=3.031;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=1.318;QD=20.27;ReadPosRankSum=2.326;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2851,318,0 chrVII 886725 . G A 3934.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.87;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3934,423,0 chrVII 887135 . T C 2099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.179;DP=92;Dels=0.00;FS=2.994;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.636;QD=22.82;ReadPosRankSum=2.396;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:2,89:92:99:2132,243,0 chrVII 887192 . T C 2965 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2998,342,0 chrVII 887665 . T C 3303.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.32;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3303,378,0 chrVII 887698 . G T 3522.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.74;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3522,390,0 chrVII 888005 . T C 3196 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.89;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3229,375,0 chrVII 888080 . A G 2051 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=20.72;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2084,234,0 chrVII 888101 . T C 1751 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=80.2202;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=18.05;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1784,198,0 chrVII 888102 . T C 1759 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=81.1867;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=18.32;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1792,201,0 chrVII 888120 . C T 1949 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=19.49;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1982,213,0 chrVII 888165 . A T 1963 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=21.34;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1996,213,0 chrVII 888247 . T A 2219 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=23.86;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2252,243,0 chrVII 888345 . A T 1102 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=20.79;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1135,123,0 chrVII 888451 . G T 836 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=17.42;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:869,99,0 chrVII 888453 . G A 915 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=18.30;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:948,102,0 chrVII 888479 . A C 787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=10.0864;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=-0.800;QD=15.13;ReadPosRankSum=-0.466;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:96:820,96,0 chrVII 888499 . G A 508 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.04;FS=0.000;HaplotypeScore=4.9029;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=10.16;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:57:541,57,0 chrVII 888567 . A T 122.13 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=3.59;SB=-1.531e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:18:155,18,0 chrVII 888588 . C T 409 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=0;QD=7.72;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:48:442,48,0 chrVII 888591 . G T 453 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=7.55;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:51:486,51,0 chrVII 888709 . C T 1445 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=19.79;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1478,159,0 chrVII 888716 . A G 1348 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=17.28;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1381,153,0 chrVII 888980 . G A 4031.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.17;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4031,438,0 chrVII 889642 . T A 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=131;Dels=0.00;FS=5.085;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.013;QD=21.04;ReadPosRankSum=1.598;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2789,306,0 chrVII 890200 . G C 4438.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.8778;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4438,498,0 chrVII 890309 . C T 6220.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=9.8656;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.30;SB=-3.250e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6220,670,0 chrVII 890801 . G C 3156 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8772;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.87;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3189,366,0 chrVII 890861 . A G 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=175;Dels=0.00;FS=5.367;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-2.164;QD=19.13;ReadPosRankSum=2.959;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:3,170:175:99:3347,390,0 chrVII 891078 . C T 4497.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.05;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4497,489,0 chrVII 891149 . G A 4401.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.6880;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.76;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4401,477,0 chrVII 891221 . A G 4938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.8218;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-1.450;QD=21.01;ReadPosRankSum=1.717;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:1,232:235:99:4938,567,0 chrVII 891244 . C G 5311.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.77;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,241:244:99:5311,591,0 chrVII 891371 . T C 3416.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.41;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3416,387,0 chrVII 891383 . C T 3678.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.26;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3678,393,0 chrVII 891431 . A C 3908.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=19.54;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:3908,447,0 chrVII 891533 . A T 4776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=203;Dels=0.00;FS=6.866;HaplotypeScore=15.4359;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.344;QD=23.53;ReadPosRankSum=2.376;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4776,511,0 chrVII 891998 . T C 4236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=203;Dels=0.00;FS=7.695;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.780;QD=20.87;ReadPosRankSum=2.377;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4236,486,0 chrVII 892442 . A G 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7889;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.179;QD=22.05;ReadPosRankSum=1.702;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,115:119:99:2657,297,0 chrVII 893184 . T G 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=154;Dels=0.00;FS=2.559;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;MQRankSum=-0.157;QD=21.69;ReadPosRankSum=2.955;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3341,375,0 chrVII 893642 . A T 3070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-0.303;QD=21.17;ReadPosRankSum=1.635;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3103,342,0 chrVII 893643 . C A 3067 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.01;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3100,342,0 chrVII 893688 . T A 3117 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.35;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3150,339,0 chrVII 893787 . A G 4376.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.79;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4376,501,0 chrVII 894066 . A T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.47;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3310,363,0 chrVII 894078 . T A 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=168;Dels=0.00;FS=6.421;HaplotypeScore=5.0773;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.787;QD=17.87;ReadPosRankSum=2.405;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3035,327,0 chrVII 894109 . T C 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=3.456;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.364;QD=17.59;ReadPosRankSum=1.714;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:3447,396,0 chrVII 894312 . C T 4350.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=25.00;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4350,460,0 chrVII 894709 . T C 4864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.560;QD=21.91;ReadPosRankSum=1.622;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:4864,546,0 chrVII 895475 . A T 3188 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.2434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.61;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3221,351,0 chrVII 895647 . C T 2389 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.97;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2422,261,0 chrVII 896027 . C T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.75;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3776,408,0 chrVII 896048 . T C 3987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=0.108;QD=22.27;ReadPosRankSum=1.713;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:3987,444,0 chrVII 896765 . T C 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=163;Dels=0.00;FS=2.900;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.475;QD=21.71;ReadPosRankSum=2.389;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3538,402,0 chrVII 896783 . T C 3475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=155;Dels=0.00;FS=3.016;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.880;QD=22.42;ReadPosRankSum=2.402;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3475,396,0 chrVII 896840 . A G 2704 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.16;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2737,309,0 chrVII 896921 . G A 3929.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.40;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3929,420,0 chrVII 896960 . A G 3873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=168;Dels=0.00;FS=3.017;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.854;QD=23.05;ReadPosRankSum=2.360;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:2,163:168:99:3873,429,0 chrVII 897236 . G A 2437 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.99;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2470,273,0 chrVII 897531 . A G 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.884;QD=22.61;ReadPosRankSum=1.685;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3323,387,0 chrVII 897580 . C T 3182 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.8933;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.73;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3215,339,0 chrVII 897636 . A G 3647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-1.158;QD=21.45;ReadPosRankSum=1.671;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3647,411,0 chrVII 897674 . C A 3729.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.3082;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.83;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3729,396,0 chrVII 897687 . T C 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-0.272;QD=19.02;ReadPosRankSum=1.693;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3386,381,0 chrVII 897749 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=178;Dels=0.00;FS=8.755;HaplotypeScore=15.8634;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=-0.839;QD=18.15;ReadPosRankSum=2.409;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:4,174:178:99:3263,355,0 chrVII 897975 . A G 4172.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.9701;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=21.07;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4172,480,0 chrVII 897999 . A G 4272.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=20.54;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4272,483,0 chrVII 898026 . G A 3418.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.67;MQ0=0;QD=17.53;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3418,366,0 chrVII 898029 . C T 3133 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=35.51;MQ0=0;QD=15.59;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3166,351,0 chrVII 898038 . T C 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=202;Dels=0.00;FS=6.305;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=35.56;MQ0=0;MQRankSum=-2.231;QD=13.54;ReadPosRankSum=2.425;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:2769,315,0 chrVII 898059 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.15;MQ0=0;QD=16.19;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3303,351,0 chrVII 898083 . T C 2866 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.97;MQ0=0;QD=14.19;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:2899,327,0 chrVII 898092 . C G 2892 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=15.22;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:2925,327,0 chrVII 898107 . G A 3356.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.6976;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=16.61;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:3356,369,0 chrVII 898236 . T C 3776.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.5943;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=23.02;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3776,420,0 chrVII 899061 . C T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.2428;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.92;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3301,354,0 chrVII 899235 . T C 3478.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.47;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3478,402,0 chrVII 899421 . T C 3875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.693;QD=22.53;ReadPosRankSum=1.712;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3875,432,0 chrVII 899490 . T C 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.334;DP=168;Dels=0.00;FS=9.029;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.675;QD=21.93;ReadPosRankSum=3.396;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:4,163:168:99:3685,411,0 chrVII 899638 . G A 3144 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.83;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3177,336,0 chrVII 899896 . G A 3024 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.59;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:3057,327,0 chrVII 900087 . C T 3156 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.55;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3189,342,0 chrVII 900146 . T C 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.188;QD=23.41;ReadPosRankSum=1.683;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3277,369,0 chrVII 900663 . T C 3357.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.35;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3357,384,0 chrVII 900675 . C T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.78;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3575,390,0 chrVII 900753 . C A 4518.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.03;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4518,489,0 chrVII 901044 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=4.221;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.187;QD=22.57;ReadPosRankSum=1.662;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3340,378,0 chrVII 901221 . C T 4778.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.4734;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.92;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4778,513,0 chrVII 901731 . T C 3726.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.6228;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.54;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3726,432,0 chrVII 902028 . A G 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.551;QD=22.30;ReadPosRankSum=1.712;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3881,438,0 chrVII 902287 . C T 2824 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=24.56;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2857,309,0 chrVII 902463 . A G 2609 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.30;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2642,297,0 chrVII 902486 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.39;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2174,237,0 chrVII 902502 . T C 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-0.857;QD=18.95;ReadPosRankSum=1.662;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:1928,216,0 chrVII 903030 . A G 4449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=274;Dels=0.00;FS=4.646;HaplotypeScore=6.5111;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;MQRankSum=-1.011;QD=16.24;ReadPosRankSum=1.707;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:1,273:274:99:4449,510,0 chrVII 903039 . G A 4630.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=2.8026;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=16.71;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:4630,487,0 chrVII 903048 . C T 4115.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=2.8464;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;QD=14.09;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:0,292:292:99:4115,456,0 chrVII 903061 . C T 3736.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;QD=11.75;SB=-3.257e+03 GT:AD:DP:GQ:PL 1/1:0,318:318:99:3736,399,0 chrVII 903078 . A G 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.721;DP=321;Dels=0.00;FS=4.096;HaplotypeScore=10.4455;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;MQRankSum=-0.880;QD=11.67;ReadPosRankSum=1.721;SB=-3.244e+03 GT:AD:DP:GQ:PL 1/1:1,320:321:99:3746,420,0 chrVII 903129 . A G 7522.01 filter AC=2;AF=1.00;AN=2;DP=389;Dels=0.00;FS=0.000;HaplotypeScore=11.0233;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=19.34;SB=-4.964e+03 GT:AD:DP:GQ:PL 1/1:0,388:389:99:7522,831,0 chrVII 903216 . A G 5957.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=21.82;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:5957,663,0 chrVII 903234 . T C 5528.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=7.4225;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=19.74;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,273:280:99:5528,642,0 chrVII 903291 . A G 5736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=15.5560;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;MQRankSum=-0.136;QD=20.49;ReadPosRankSum=2.961;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:3,277:280:99:5736,657,0 chrVII 903336 . C T 5603.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=28.6609;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=22.78;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5603,609,0 chrVII 903582 . T G 3226.07 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=170;Dels=0.00;FS=6.151;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.782;QD=18.98;ReadPosRankSum=2.303;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:3259,378,0 chrVII 903604 . G T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.90;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3343,366,0 chrVII 903621 . A G 3068 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=18.59;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3101,360,0 chrVII 903660 . T C 3168 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8376;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.12;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3201,357,0 chrVII 904076 . T C 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=17.0859;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.443;QD=23.50;ReadPosRankSum=1.712;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4065,456,0 chrVII 904249 . C T 5186.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.75;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5186,559,0 chrVII 904621 . T C 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=5.244;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-0.982;QD=17.58;ReadPosRankSum=1.714;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3411,381,0 chrVII 904632 . C T 3646.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.79;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3646,393,0 chrVII 904835 . T G 2341 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.51;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2374,264,0 chrVII 905027 . T C 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=1;MQRankSum=-0.407;QD=22.49;ReadPosRankSum=1.642;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2642,297,0 chrVII 905084 . T C 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.881;QD=20.23;ReadPosRankSum=1.703;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2440,273,0 chrVII 905148 . C T 4893.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.8067;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.64;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4893,520,0 chrVII 905266 . A G 4597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=226;Dels=0.00;FS=11.984;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.824;QD=20.34;ReadPosRankSum=2.351;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:2,223:226:99:4597,513,0 chrVII 905275 . T C 4648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-0.763;QD=19.69;ReadPosRankSum=1.717;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:4648,519,0 chrVII 905510 . T C 8025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=356;Dels=0.00;FS=3.147;HaplotypeScore=24.8600;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=0.415;QD=22.54;ReadPosRankSum=1.703;SB=-4.288e+03 GT:AD:DP:GQ:PL 1/1:1,354:356:99:8025,903,0 chrVII 905668 . C T 3058 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=18.9188;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=14.56;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:1,209:210:99:3091,336,0 chrVII 905690 . T C 3286.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=198;Dels=0.00;FS=8.129;HaplotypeScore=4.8726;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=0;MQRankSum=-0.791;QD=16.60;ReadPosRankSum=-1.395;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:1,194:198:99:3286,369,0 chrVII 905694 . C T 3373.01 SnpCluster AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.5612;MLEAC=2;MLEAF=1.00;MQ=39.79;MQ0=0;QD=16.87;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3373,381,0 chrVII 905698 . C T 3674.01 SnpCluster AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.1273;MLEAC=2;MLEAF=1.00;MQ=41.04;MQ0=0;QD=17.33;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,211:212:99:3674,396,0 chrVII 905710 . T G 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=215;Dels=0.00;FS=13.095;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;MQRankSum=-1.296;QD=15.86;ReadPosRankSum=2.427;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:3410,384,0 chrVII 906305 . C T 6458.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=16.8989;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.82;SB=-3.389e+03 GT:AD:DP:GQ:PL 1/1:0,294:296:99:6458,711,0 chrVII 906509 . T G 5151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=278;Dels=0.00;FS=9.320;HaplotypeScore=9.4038;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.704;QD=18.53;ReadPosRankSum=2.975;SB=-3.282e+03 GT:AD:DP:GQ:PL 1/1:3,273:278:99:5151,594,0 chrVII 906524 . T C 5259.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=-0.746;QD=18.99;ReadPosRankSum=1.694;SB=-3.277e+03 GT:AD:DP:GQ:PL 1/1:1,273:277:99:5259,603,0 chrVII 906984 . C T 5514.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:5514,589,0 chrVII 907406 . G A 5636.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=17.9089;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.63;SB=-2.802e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5636,601,0 chrVII 907442 . C T 5298.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.9214;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.44;SB=-2.804e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5298,588,0 chrVII 907569 . T C 5434.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.09;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5434,609,0 chrVII 907598 . T C 4764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=10.3510;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.059;QD=20.19;ReadPosRankSum=1.644;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:4764,546,0 chrVII 907907 . C T 6586.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=16.9037;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.35;SB=-3.585e+03 GT:AD:DP:GQ:PL 1/1:1,280:282:99:6586,712,0 chrVII 907942 . C G 5439.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=10.8896;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.08;SB=-3.227e+03 GT:AD:DP:GQ:PL 1/1:0,255:258:99:5439,600,0 chrVII 908177 . T A 5483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.324;DP=243;Dels=0.00;FS=12.664;HaplotypeScore=11.3488;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.570;QD=22.56;ReadPosRankSum=3.360;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:4,239:243:99:5483,589,0 chrVII 908207 . G A 5007.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=17.4960;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.13;SB=-2.910e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5007,540,0 chrVII 908833 . G A 2543 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.04;FS=0.000;HaplotypeScore=16.8761;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.50;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2576,273,0 chrVII 909620 . T C 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=3.128;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.524;QD=22.21;ReadPosRankSum=1.686;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3353,375,0 chrVII 909722 . A G 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=171;Dels=0.00;FS=2.976;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.282;QD=21.78;ReadPosRankSum=2.377;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3724,414,0 chrVII 909752 . G T 4380.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.89;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4380,466,0 chrVII 910131 . T A 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.875;DP=69;Dels=0.00;FS=31.732;HaplotypeScore=5.9934;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=0.383;QD=0.57;ReadPosRankSum=-3.411;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,7:69:69:69,0,208 chrVII 910249 . G A 1766 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.94;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1799,201,0 chrVII 910303 . T C 1697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=77;Dels=0.00;FS=5.573;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.619;QD=22.04;ReadPosRankSum=2.856;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:3,74:77:99:1730,192,0 chrVII 910437 . C T 2726 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2759,306,0 chrVII 910647 . T C 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=3.531;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.407;QD=21.79;ReadPosRankSum=1.672;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2539,279,0 chrVII 910912 . C T 2444 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.42;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2477,270,0 chrVII 911092 . A G 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=170;Dels=0.00;FS=11.144;HaplotypeScore=9.6923;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.635;QD=21.86;ReadPosRankSum=2.946;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:3,165:170:99:3717,417,0 chrVII 911134 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.19;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3021,321,0 chrVII 911141 . C T 2882 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=19.74;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2915,315,0 chrVII 911221 . G A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.21;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3496,390,0 chrVII 911599 . T C 2607 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.20;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2640,297,0 chrVII 911648 . A G 2138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.443;QD=21.82;ReadPosRankSum=1.696;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,95:98:99:2171,246,0 chrVII 911703 . G C 2504 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.04;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,114:118:99:2537,297,0 chrVII 911857 . G A 2621 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=23.61;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2654,282,0 chrVII 911975 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.5681;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.64;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3262,351,0 chrVII 912560 . C T 6032.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.89;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:6032,643,0 chrVII 912779 . T C 6154.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.40;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,257:263:99:6154,690,0 chrVII 912846 . C T 4391.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.23;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4391,469,0 chrVII 913000 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.085;DP=168;Dels=0.00;FS=14.207;HaplotypeScore=14.3728;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.088;QD=20.60;ReadPosRankSum=3.262;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:4,164:168:99:3460,390,0 chrVII 913078 . G A 4306.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.9932;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.61;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4306,465,0 chrVII 913176 . C T 4001.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.6282;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.32;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4001,435,0 chrVII 913273 . G A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.72;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3499,390,0 chrVII 913308 . T C 3016 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.38;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3049,354,0 chrVII 913488 . T C 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.4201;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.377;QD=22.86;ReadPosRankSum=2.412;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:4527,501,0 chrVII 914822 . C T 3829.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.8357;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.70;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3829,414,0 chrVII 915219 . T C 4503.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.16;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4503,501,0 chrVII 916575 . A G 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.982;QD=22.59;ReadPosRankSum=1.688;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3546,408,0 chrVII 916724 . C T 2463 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.5687;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.52;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2496,273,0 chrVII 916953 . T C 2758 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.6026;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.98;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2791,321,0 chrVII 917004 . C T 2971 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.55;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3004,321,0 chrVII 917105 . A C 2878 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.98;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2911,327,0 chrVII 917149 . G A 2915 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=9.2040;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.89;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2948,318,0 chrVII 917290 . G A 4177.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.14;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4177,447,0 chrVII 917381 . A G 3573.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.64;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3573,393,0 chrVII 917406 . C G 3622.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.22;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3622,408,0 chrVII 917454 . A G 4302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.4167;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.380;QD=22.88;ReadPosRankSum=1.714;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4302,483,0 chrVII 917591 . A C 3910.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.00;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3910,435,0 chrVII 917775 . T C 2681 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.80;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2714,312,0 chrVII 918053 . A G 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.039;QD=22.66;ReadPosRankSum=1.702;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2662,297,0 chrVII 918091 . G A 3050 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3083,327,0 chrVII 918194 . C T 3830.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.4136;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3830,414,0 chrVII 918242 . T C 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.0633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.577;QD=23.26;ReadPosRankSum=1.709;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3443,384,0 chrVII 918281 . G A 2705 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2738,312,0 chrVII 918571 . C T 3445.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.44;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3445,375,0 chrVII 918846 . T C 4114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=179;Dels=0.00;FS=5.410;HaplotypeScore=13.6281;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=2.509;QD=22.98;ReadPosRankSum=2.961;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:4114,459,0 chrVII 918902 . A G 4016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=174;Dels=0.00;FS=7.972;HaplotypeScore=11.7819;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.807;QD=23.08;ReadPosRankSum=2.350;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:4016,450,0 chrVII 918971 . T C 4160.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.24;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4160,468,0 chrVII 919087 . G A 4121.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.8980;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.81;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,193:198:99:4121,441,0 chrVII 919108 . T A 4249.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.7247;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=20.63;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4249,450,0 chrVII 919258 . T C 3707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=17.0774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.525;QD=22.07;ReadPosRankSum=1.691;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3707,423,0 chrVII 919382 . T C 2407 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.93;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2440,282,0 chrVII 919531 . G A 3307.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.9991;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.79;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3307,357,0 chrVII 920149 . A C 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.403;DP=138;Dels=0.00;FS=5.927;HaplotypeScore=9.8273;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.999;QD=19.91;ReadPosRankSum=1.707;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2780,315,0 chrVII 920526 . T G 5070.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5070,573,0 chrVII 920941 . A G 1274 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3617;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=13.70;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1307,150,0 chrVII 921308 . C T 4136.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.00;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4136,450,0 chrVII 922006 . G A 3133 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=26.11;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3166,342,0 chrVII 922053 . A G 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=137;Dels=0.00;FS=9.096;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.028;QD=23.18;ReadPosRankSum=2.302;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:2,131:137:99:3209,363,0 chrVII 922091 . C T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=21.29;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3726,391,0 chrVII 922150 . G A 3638.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=18.37;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3638,405,0 chrVII 922161 . T C 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=190;Dels=0.00;FS=7.283;HaplotypeScore=5.1310;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.669;QD=19.76;ReadPosRankSum=2.346;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:3754,417,0 chrVII 922607 . C T 4075.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.5706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4075,441,0 chrVII 922984 . G C 3592.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3592,405,0 chrVII 923714 . C T 2443 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2476,261,0 chrVII 923812 . C T 3956.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.2093;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.27;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3956,426,0 chrVII 923851 . C T 3085 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.50;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:3118,330,0 chrVII 923939 . C T 3565.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2918;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.61;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3565,393,0 chrVII 924719 . T C 4825.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.5763;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.09;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4825,546,0 chrVII 924796 . G A 3948.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.78;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3948,423,0 chrVII 924899 . A G 5684.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=15.9703;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=23.49;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5684,630,0 chrVII 925190 . G T 4571.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.8414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4571,498,0 chrVII 925313 . C T 4267.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4267,459,0 chrVII 925789 . C T 3196 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3229,363,0 chrVII 926018 . A G 2554 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.32;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2587,288,0 chrVII 926236 . A G 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=153;Dels=0.00;FS=9.832;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.172;QD=23.25;ReadPosRankSum=2.954;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3558,390,0 chrVII 926327 . C T 3822.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.5683;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.74;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3822,411,0 chrVII 926465 . T C 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;DP=147;Dels=0.00;FS=3.040;HaplotypeScore=9.8469;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.288;QD=20.89;ReadPosRankSum=1.052;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3104,357,0 chrVII 926609 . A G 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.716;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.238;QD=23.89;ReadPosRankSum=1.667;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3846,429,0 chrVII 926669 . T C 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.670;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.951;QD=21.26;ReadPosRankSum=1.683;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3052,354,0 chrVII 927088 . G A 2362 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.09;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2395,267,0 chrVII 927149 . G A 2667 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.68;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2700,297,0 chrVII 927158 . A G 2487 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.06;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2520,285,0 chrVII 927284 . T C 2474 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.89;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2507,291,0 chrVII 927341 . T A 2363 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.94;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2396,258,0 chrVII 927609 . A G 2577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.9215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.953;QD=21.12;ReadPosRankSum=1.559;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2610,288,0 chrVII 927650 . A G 2472 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2505,285,0 chrVII 927723 . C A 2486 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=13.0121;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.60;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2519,270,0 chrVII 927992 . G C 2119 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.54;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2152,237,0 chrVII 928890 . C G 2429 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.75;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2462,285,0 chrVII 928933 . G A 2779 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=15.3681;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2812,303,0 chrVII 929033 . A C 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.379;QD=19.37;ReadPosRankSum=1.666;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2067,234,0 chrVII 929045 . T C 2045 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.66;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2078,231,0 chrVII 929325 . A G 2958 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.48;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2991,345,0 chrVII 929519 . C T 3334.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.15;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3334,360,0 chrVII 929945 . G A 3578.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.5739;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.79;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3578,384,0 chrVII 930476 . C T 3814.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.14;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3814,405,0 chrVII 930575 . C T 3499.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.64;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3499,384,0 chrVII 930638 . A G 3221.92 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.4108;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.22;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3255,369,0 chrVII 930769 . C T 2081 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.23;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2114,237,0 chrVII 930881 . T C 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=112;Dels=0.00;FS=6.464;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-0.388;QD=21.27;ReadPosRankSum=2.405;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2415,270,0 chrVII 930912 . T G 2410 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=22.95;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2443,270,0 chrVII 930939 . A C 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.446;DP=93;Dels=0.00;FS=12.227;HaplotypeScore=53.4638;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;MQRankSum=-0.250;QD=20.65;ReadPosRankSum=2.729;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:3,90:93:99:1953,205,0 chrVII 931052 . G T 2352 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;QD=23.06;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2385,261,0 chrVII 931106 . T C 2187 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=11.5591;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=22.09;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2220,252,0 chrVII 931123 . T C 1934 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.02;FS=0.000;HaplotypeScore=15.9294;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;QD=22.49;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1967,219,0 chrVII 931166 . A C 1054 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;QD=20.27;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1087,123,0 chrVII 931278 . C T 51.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.167;DP=56;Dels=0.00;FS=54.444;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.29;MQ0=22;MQRankSum=-1.507;QD=0.93;ReadPosRankSum=2.091;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:43,13:56:9:84,9,0 chrVII 931491 . T G 53.97 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.02;MQ0=7;QD=3.86;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:86,9,0 chrVII 931541 . A C 14.28 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=1;MLEAF=0.500;MQ=21.02;MQ0=7;MQRankSum=1.754;QD=1.02;ReadPosRankSum=1.754;SB=-1.086e-01 GT:AD:DP:GQ:PL 0/1:10,4:14:13:44,0,13 chrVII 931542 . T A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.637;DP=12;Dels=0.00;FS=18.195;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=32.95;MQ0=0;MQRankSum=-1.408;QD=1.49;ReadPosRankSum=2.637;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:6,5:12:6:49,6,0 chrVII 931551 . T G 244 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=37.26;MQ0=0;QD=15.25;SB=-1.579e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:33:277,33,0 chrVII 931627 . T C 1761 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.05;MQ0=0;QD=22.87;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1794,204,0 chrVII 932013 . T G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=8.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:48,6,0 chrVII 932015 . T A 65.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.51;MQ0=0;QD=16.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:98,12,0 chrVII 932191 . G A 2303 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=25.03;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2336,243,0 chrVII 932498 . T C 2718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=118;Dels=0.00;FS=10.708;HaplotypeScore=10.4676;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.923;QD=23.03;ReadPosRankSum=2.940;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:3,114:118:99:2751,309,0 chrVII 933365 . T C 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=12.3464;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.541;QD=22.19;ReadPosRankSum=1.696;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2185,249,0 chrVII 933512 . T C 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=134;Dels=0.00;FS=2.768;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.147;QD=23.11;ReadPosRankSum=2.413;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3130,354,0 chrVII 933869 . G T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3564,384,0 chrVII 934463 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3006,327,0 chrVII 934700 . G A 4235.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.91;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4235,456,0 chrVII 934919 . C T 4551.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.14;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4551,492,0 chrVII 935285 . T C 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=5.127;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.965;QD=22.49;ReadPosRankSum=1.658;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3204,372,0 chrVII 935556 . T C 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.655;QD=23.39;ReadPosRankSum=1.629;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3191,357,0 chrVII 935766 . T C 2721 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3902;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.60;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2754,309,0 chrVII 935861 . T A 1737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=86;Dels=0.00;FS=3.680;HaplotypeScore=3.0854;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.371;QD=20.20;ReadPosRankSum=1.650;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1770,192,0 chrVII 935874 . T G 1715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.763;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=0.591;QD=19.49;ReadPosRankSum=1.653;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1748,195,0 chrVII 936030 . G A 1889 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.22;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1922,213,0 chrVII 936066 . C T 1988 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.38;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2021,216,0 chrVII 936067 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.42;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1932,207,0 chrVII 936350 . A G 4046.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.64;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4046,471,0 chrVII 936413 . G C 3921.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.0950;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=19.51;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,195:201:99:3921,456,0 chrVII 936431 . A G 3793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=185;Dels=0.00;FS=2.912;HaplotypeScore=6.0351;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-0.737;QD=20.50;ReadPosRankSum=2.197;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3793,438,0 chrVII 936778 . T C 3096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=3.379;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.399;QD=22.93;ReadPosRankSum=1.681;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3129,351,0 chrVII 936948 . G C 2930 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2963,333,0 chrVII 937221 . T C 3911.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3911,435,0 chrVII 937376 . T G 4881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=220;Dels=0.00;FS=6.077;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.106;QD=22.19;ReadPosRankSum=2.848;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:3,215:220:99:4881,552,0 chrVII 937670 . G A 3557.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.92;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3557,390,0 chrVII 937718 . G C 3616.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.43;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3616,423,0 chrVII 937780 . A G 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=134;Dels=0.00;FS=5.446;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.523;QD=20.40;ReadPosRankSum=2.947;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:3,130:134:99:2766,309,0 chrVII 937797 . G T 2642 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=21.31;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2675,291,0 chrVII 937835 . T C 2098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.236;DP=134;Dels=0.00;FS=8.660;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;MQRankSum=-1.340;QD=15.66;ReadPosRankSum=3.262;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:4,130:134:99:2131,240,0 chrVII 937838 . G A 2120 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=16.06;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2153,228,0 chrVII 937863 . T C 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=0.388;QD=16.92;ReadPosRankSum=1.706;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2300,258,0 chrVII 938120 . T C 3283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=3.134;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.464;QD=22.96;ReadPosRankSum=1.708;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3283,360,0 chrVII 938306 . C T 5028.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.8422;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.94;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5028,540,0 chrVII 938364 . T C 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=16.0162;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.763;QD=20.13;ReadPosRankSum=1.691;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3402,387,0 chrVII 938447 . T C 3809.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.37;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3809,426,0 chrVII 938528 . C A 5145.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.6008;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.04;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5145,555,0 chrVII 938768 . A C 3489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=10.2885;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-1.436;QD=22.22;ReadPosRankSum=1.687;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:1,151:155:99:3489,396,0 chrVII 938789 . T C 3313.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.54;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3313,369,0 chrVII 938924 . G A 4630.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.50;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4630,493,0 chrVII 939119 . G A 4229.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.8414;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.14;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4229,474,0 chrVII 939184 . C T 3437.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.76;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3437,387,0 chrVII 939208 . G T 3190 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.99;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3223,342,0 chrVII 939212 . C A 3203 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=20.53;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3236,351,0 chrVII 939279 . C T 2825 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6731;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=20.04;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:2858,309,0 chrVII 939290 . T C 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=4.638;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-0.650;QD=20.16;ReadPosRankSum=1.705;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2634,303,0 chrVII 939318 . A G 2375 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.59;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2408,273,0 chrVII 939675 . A G 2542 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=18.29;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2575,297,0 chrVII 939713 . A G 1628 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=122;Dels=0.00;FS=5.782;HaplotypeScore=101.4834;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;MQRankSum=-2.066;QD=13.34;ReadPosRankSum=2.943;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:1661,186,0 chrVII 939717 . A G 1617 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.68;MQ0=0;QD=13.82;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:1650,183,0 chrVII 939718 . G A 1666 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;QD=14.00;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:1699,183,0 chrVII 940048 . G C 2928 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9234;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=21.37;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2961,330,0 chrVII 940082 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=19.59;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2756,297,0 chrVII 940087 . A G 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=0.012;QD=18.81;ReadPosRankSum=1.707;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2667,300,0 chrVII 940459 . G A 3403.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.5179;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.59;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3403,363,0 chrVII 941028 . A G 4017.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.49;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4017,441,0 chrVII 941154 . G A 3984.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.77;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3984,435,0 chrVII 941223 . C T 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=170;Dels=0.00;FS=4.191;HaplotypeScore=6.8564;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.495;QD=23.80;ReadPosRankSum=-1.485;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4046,430,0 chrVII 941292 . T C 3890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=4.722;HaplotypeScore=15.5520;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.643;QD=22.10;ReadPosRankSum=1.692;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3890,450,0 chrVII 941458 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.90;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3235,348,0 chrVII 942778 . T A 7651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=15.4632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.273;QD=26.11;ReadPosRankSum=2.382;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:2,291:293:99:7651,802,0 chrVII 943288 . T C 4915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=212;Dels=0.00;FS=2.896;HaplotypeScore=14.4119;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.827;QD=23.18;ReadPosRankSum=2.426;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:2,208:212:99:4915,552,0 chrVII 943580 . T G 4850.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.88;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4850,540,0 chrVII 943671 . C T 4333.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.6115;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4333,468,0 chrVII 943786 . T C 4442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.400;QD=21.25;ReadPosRankSum=1.715;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4442,510,0 chrVII 943873 . T C 4244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=184;Dels=0.00;FS=6.944;HaplotypeScore=10.1885;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.113;QD=23.07;ReadPosRankSum=2.423;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4244,477,0 chrVII 944106 . C T 3637.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.0278;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.91;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3637,390,0 chrVII 944212 . C A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3755,402,0 chrVII 944566 . C T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3774,417,0 chrVII 944610 . T C 3731.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.9969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3731,414,0 chrVII 944684 . G A 2541 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.8527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.40;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2574,288,0 chrVII 944981 . T A 2529 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.64;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2562,276,0 chrVII 945026 . A G 2371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.555;QD=23.95;ReadPosRankSum=1.697;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2404,267,0 chrVII 945166 . C T 1774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.472;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.346;QD=22.17;ReadPosRankSum=0.390;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1807,201,0 chrVII 945207 . G T 2364 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.73;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2397,264,0 chrVII 945963 . G A 3581.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.81;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3581,381,0 chrVII 945978 . C T 3459.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.17;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3459,372,0 chrVII 946206 . T C 2037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.446;DP=94;Dels=0.00;FS=9.612;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-0.446;QD=21.67;ReadPosRankSum=2.925;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:3,90:94:99:2070,237,0 chrVII 946366 . C T 2125 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=18.81;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2158,228,0 chrVII 946369 . G A 2230 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=20.27;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2263,240,0 chrVII 946664 . G A 5071.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.4794;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.95;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,217:221:99:5071,564,0 chrVII 946782 . A G 5159.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.6002;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.34;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5159,576,0 chrVII 946974 . A G 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=140;Dels=0.00;FS=2.447;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.676;QD=21.86;ReadPosRankSum=2.878;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:3,137:140:99:3094,348,0 chrVII 947080 . T C 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=120;Dels=0.00;FS=9.591;HaplotypeScore=13.0186;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-1.496;QD=21.60;ReadPosRankSum=2.908;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2625,297,0 chrVII 947252 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.17;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2117,225,0 chrVII 947255 . A G 1885 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.05;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1918,216,0 chrVII 947395 . C A 2933 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=16.6421;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.28;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2966,321,0 chrVII 947600 . A G 2834 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.80;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2867,330,0 chrVII 947743 . T C 2846 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.52;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2879,324,0 chrVII 947792 . C T 3541.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.59;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3541,378,0 chrVII 947874 . G C 3792.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=21.92;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3792,423,0 chrVII 947884 . C T 3527.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3738;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.99;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3527,384,0 chrVII 948145 . G A 4573.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.2770;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.31;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4573,498,0 chrVII 948202 . T G 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.129;QD=21.72;ReadPosRankSum=1.710;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3410,387,0 chrVII 948628 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.50;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3088,330,0 chrVII 948634 . C T 3189 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.98;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3222,339,0 chrVII 949014 . T C 2937 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.69;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2970,327,0 chrVII 949072 . C T 1221 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=22.20;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1254,141,0 chrVII 949092 . T C 1026 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=22.30;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1059,114,0 chrVII 949572 . T C 4469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=233;Dels=0.00;FS=2.715;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-0.526;QD=19.18;ReadPosRankSum=2.322;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:2,229:233:99:4469,492,0 chrVII 949577 . C G 4369.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.75;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,225:233:99:4369,495,0 chrVII 949940 . A G 4015.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=15.8432;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4015,456,0 chrVII 950699 . C A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3846,411,0 chrVII 950759 . G A 4504.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4504,480,0 chrVII 950926 . G A 2809 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2842,306,0 chrVII 951099 . A C 1804 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6152;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.55;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1837,207,0 chrVII 951635 . G A 2506 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.60;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2539,279,0 chrVII 951655 . C T 2671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.470;QD=22.26;ReadPosRankSum=0.655;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2704,288,0 chrVII 951733 . A T 2422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=9.0311;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.587;QD=20.18;ReadPosRankSum=1.674;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2455,261,0 chrVII 951758 . C A 2256 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=19.79;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2289,249,0 chrVII 951773 . C T 2010 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=16.61;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2043,222,0 chrVII 951825 . A T 1061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.192;DP=87;Dels=0.00;FS=18.877;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;MQRankSum=-1.136;QD=12.20;ReadPosRankSum=3.073;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:9,78:87:99:1094,126,0 chrVII 951835 . A T 1066 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;QD=11.22;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1099,123,0 chrVII 951976 . G A 2643 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.21;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2676,285,0 chrVII 952051 . T G 3198 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.1396;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.90;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3231,363,0 chrVII 952076 . A G 3518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=3.823;HaplotypeScore=8.2102;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=1.077;QD=21.32;ReadPosRankSum=1.711;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3518,390,0 chrVII 952223 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3243,360,0 chrVII 952695 . T A 4389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=192;Dels=0.00;FS=6.562;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.495;QD=22.86;ReadPosRankSum=2.308;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4389,486,0 chrVII 952725 . G A 5194.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.0994;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.05;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5194,561,0 chrVII 952860 . C T 4343.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.9102;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.73;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4343,465,0 chrVII 953343 . T C 2788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=144;Dels=0.00;FS=3.933;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.634;QD=19.36;ReadPosRankSum=1.683;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,140:144:99:2821,321,0 chrVII 953540 . A G 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=3.545;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;MQRankSum=0.427;QD=21.59;ReadPosRankSum=1.682;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3013,333,0 chrVII 953555 . T C 2939 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=21.30;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2972,336,0 chrVII 953629 . A C 2909 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=23.09;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2942,342,0 chrVII 953664 . G T 3392.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0735;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=23.72;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3392,372,0 chrVII 953718 . G T 3350.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.5562;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=23.59;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3350,363,0 chrVII 953755 . G A 2759 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.0926;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;QD=18.15;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2792,300,0 chrVII 953777 . G A 2271 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.49;MQ0=0;QD=15.24;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2304,246,0 chrVII 953785 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=120.9296;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=13.47;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2000,225,0 chrVII 953827 . C G 2690 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=16.92;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2723,300,0 chrVII 953864 . C G 3431.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=23.4583;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=19.83;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,167:172:99:3431,387,0 chrVII 953925 . G A 2965 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.01;FS=0.000;HaplotypeScore=165.8756;MLEAC=2;MLEAF=1.00;MQ=45.23;MQ0=0;QD=17.54;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2998,330,0 chrVII 953929 . C G 2866 SnpCluster AC=2;AF=1.00;AN=2;DP=169;Dels=0.01;FS=0.000;HaplotypeScore=151.9167;MLEAC=2;MLEAF=1.00;MQ=44.13;MQ0=0;QD=16.96;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:2899,324,0 chrVII 953935 . T C 2410 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.8900;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;MQRankSum=-0.498;QD=15.06;ReadPosRankSum=1.645;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2443,285,0 chrVII 954244 . T C 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=130;Dels=0.00;FS=8.897;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.274;QD=22.97;ReadPosRankSum=2.374;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3019,333,0 chrVII 954301 . A G 3095 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.59;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3128,363,0 chrVII 954455 . G C 2982 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.0890;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.67;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3015,342,0 chrVII 954491 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.98;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2699,294,0 chrVII 954667 . C G 4065.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.64;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4065,444,0 chrVII 954701 . C T 3775.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=17.5092;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.45;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:3775,405,0 chrVII 954734 . T C 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=1.299;QD=22.68;ReadPosRankSum=1.656;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3118,351,0 chrVII 954781 . G A 3218.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.84;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3251,351,0 chrVII 954941 . G T 3097 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.36;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3130,333,0 chrVII 954962 . A G 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.662;QD=20.33;ReadPosRankSum=1.681;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2798,318,0 chrVII 955172 . T C 2493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=125;Dels=0.00;FS=6.114;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.374;QD=19.94;ReadPosRankSum=2.895;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:3,121:125:99:2526,285,0 chrVII 955260 . G A 3883.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.24;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3883,409,0 chrVII 955379 . C T 3492.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.4700;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.76;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3492,375,0 chrVII 955592 . A T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.67;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3456,366,0 chrVII 955670 . T C 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=147;Dels=0.00;FS=2.974;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.042;QD=22.46;ReadPosRankSum=2.365;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3302,366,0 chrVII 955721 . C T 3604.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.81;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3604,381,0 chrVII 955886 . T C 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.221;QD=18.79;ReadPosRankSum=0.863;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3021,345,0 chrVII 955926 . G A 3099 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.7988;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=20.52;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3132,333,0 chrVII 955973 . T A 2854 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.47;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2887,321,0 chrVII 956028 . G A 2761 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=25.10;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2794,303,0 chrVII 956057 . C T 2580 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4159;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.04;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2613,291,0 chrVII 956380 . G A 3657.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3657,393,0 chrVII 956549 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=20.4743;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3425,369,0 chrVII 956993 . T C 4112.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4112,474,0 chrVII 957479 . G A 273 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=2.58;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:36:306,36,0 chrVII 958287 . A T 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.810;QD=23.29;ReadPosRankSum=1.700;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2595,276,0 chrVII 958479 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=145;Dels=0.00;FS=5.486;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.275;QD=22.94;ReadPosRankSum=1.708;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3327,381,0 chrVII 958516 . T C 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=17.6744;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.056;QD=22.47;ReadPosRankSum=2.289;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:2,153:158:99:3551,402,0 chrVII 958592 . A G 4846.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.7776;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.11;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4846,540,0 chrVII 958623 . A C 4172.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4172,477,0 chrVII 958749 . C G 4556.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.33;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,199:204:99:4556,498,0 chrVII 958955 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.75;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2481,267,0 chrVII 958980 . G A 2674 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0447;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.39;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2707,294,0 chrVII 959286 . T C 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.5893;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.628;QD=19.92;ReadPosRankSum=1.632;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2802,312,0 chrVII 959305 . C T 2746 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.4326;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.79;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2779,297,0 chrVII 959587 . G C 1517 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.99;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1550,171,0 chrVII 959836 . T G 659 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.385;QD=18.31;ReadPosRankSum=1.636;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,35:36:78:692,78,0 chrVII 959852 . T C 955 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.483;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.250;QD=18.02;ReadPosRankSum=2.868;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,50:53:99:988,108,0 chrVII 959945 . T C 2452 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.107;QD=19.31;ReadPosRankSum=2.237;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2485,285,0 chrVII 959960 . G A 2482 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.51;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2515,270,0 chrVII 960018 . T C 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.718;DP=131;Dels=0.00;FS=2.345;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=0.823;QD=19.41;ReadPosRankSum=3.766;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:5,126:131:99:2576,291,0 chrVII 960362 . C A 3956.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3956,420,0 chrVII 960924 . G C 4192.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.4789;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.72;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4192,468,0 chrVII 960936 . A G 4214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=3.243;HaplotypeScore=6.8847;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=1.046;QD=21.83;ReadPosRankSum=1.714;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4214,474,0 chrVII 961146 . G A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.5105;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=22.84;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3358,366,0 chrVII 961180 . A G 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=12.8425;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;MQRankSum=-0.244;QD=18.80;ReadPosRankSum=1.655;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2590,291,0 chrVII 961203 . A T 1942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=123;Dels=0.00;FS=9.204;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=38.15;MQ0=0;MQRankSum=-2.488;QD=15.79;ReadPosRankSum=2.944;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:4,119:123:99:1975,213,0 chrVII 961217 . A G 1527 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.18;MQ0=0;QD=14.54;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1560,180,0 chrVII 961219 . A G 1465 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=105;Dels=0.00;FS=3.052;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.18;MQ0=0;MQRankSum=-0.129;QD=13.95;ReadPosRankSum=2.403;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:1498,174,0 chrVII 961220 . C A 1482 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.25;MQ0=0;QD=14.25;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1515,174,0 chrVII 961221 . C T 1529 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;QD=14.42;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1562,177,0 chrVII 961278 . A G 2424 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=18.65;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2457,270,0 chrVII 961359 . T G 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=-0.792;QD=21.15;ReadPosRankSum=1.705;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2761,309,0 chrVII 961361 . C T 2588 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=19.46;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2621,294,0 chrVII 961398 . T C 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.278;DP=157;Dels=0.00;FS=8.340;HaplotypeScore=15.3145;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-0.513;QD=18.76;ReadPosRankSum=3.278;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:4,151:157:99:2978,330,0 chrVII 961462 . G A 4480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.943;DP=198;Dels=0.00;FS=2.868;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-1.019;QD=22.63;ReadPosRankSum=0.905;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4480,445,0 chrVII 961585 . C T 4039.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=22.07;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4039,435,0 chrVII 961597 . A C 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=176;Dels=0.00;FS=6.402;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.232;QD=19.98;ReadPosRankSum=2.337;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3517,405,0 chrVII 961627 . A G 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.186;DP=166;Dels=0.00;FS=2.903;HaplotypeScore=7.0938;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.067;QD=18.55;ReadPosRankSum=1.675;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3112,325,0 chrVII 961690 . C G 3932.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3932,450,0 chrVII 961741 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=185;Dels=0.00;FS=4.027;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.590;QD=18.01;ReadPosRankSum=1.713;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,181:185:99:3332,387,0 chrVII 961780 . G C 2910 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=15.16;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:2943,333,0 chrVII 962062 . T A 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=3.475;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.452;QD=22.58;ReadPosRankSum=1.682;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3172,348,0 chrVII 962110 . G A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.42;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3889,417,0 chrVII 962346 . A G 3842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=162;Dels=0.00;FS=3.038;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.008;QD=23.72;ReadPosRankSum=2.388;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:3842,423,0 chrVII 963255 . T C 2926 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.17;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2959,327,0 chrVII 963268 . C T 3094 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.94;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3127,333,0 chrVII 963538 . T C 5125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.214;DP=240;Dels=0.00;FS=14.006;HaplotypeScore=13.3382;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=2.335;QD=21.35;ReadPosRankSum=3.424;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:4,236:240:99:5125,585,0 chrVII 963793 . T C 5033.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=8.9832;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.06;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5033,564,0 chrVII 963805 . C T 4937.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.10;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:4937,532,0 chrVII 963897 . T C 3907.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.98;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3907,435,0 chrVII 963916 . G A 3968.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.7499;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.04;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3968,435,0 chrVII 963952 . T C 3299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=4.477;HaplotypeScore=13.5474;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.152;QD=19.07;ReadPosRankSum=1.712;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3299,378,0 chrVII 964040 . C G 3817.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.81;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3817,429,0 chrVII 964269 . T C 3364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.142;DP=160;Dels=0.00;FS=9.197;HaplotypeScore=16.0982;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.317;QD=21.03;ReadPosRankSum=3.404;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:4,156:160:99:3364,378,0 chrVII 964575 . T C 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=169;Dels=0.00;FS=9.042;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.007;QD=22.17;ReadPosRankSum=2.275;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3746,417,0 chrVII 964750 . G A 2686 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.96;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2719,300,0 chrVII 964879 . A G 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=15.8855;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.180;QD=21.68;ReadPosRankSum=1.687;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3360,381,0 chrVII 964977 . T C 2860 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4743;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2893,324,0 chrVII 965050 . G A 3187 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.8007;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=22.44;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3220,354,0 chrVII 965303 . G A 3955.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.13;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3955,420,0 chrVII 965316 . A G 3519.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.6912;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.82;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3519,402,0 chrVII 965389 . C T 4077.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.5308;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.70;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4077,438,0 chrVII 965476 . A T 3390.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.9386;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.59;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3390,366,0 chrVII 965676 . T G 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.435;QD=21.85;ReadPosRankSum=1.633;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2349,258,0 chrVII 965888 . C T 1989 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.62;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2022,225,0 chrVII 965972 . G A 2235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=3.139;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.698;QD=21.70;ReadPosRankSum=-1.026;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2268,258,0 chrVII 966466 . A G 3154 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3187,366,0 chrVII 966743 . T C 2797 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2830,318,0 chrVII 966881 . C T 2454 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.79;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2487,264,0 chrVII 966950 . G C 2050 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.78;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2083,228,0 chrVII 967106 . T C 2610 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.94;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2643,294,0 chrVII 967272 . C T 2507 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.2381;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.99;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2540,273,0 chrVII 967359 . G A 3056 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.25;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3089,336,0 chrVII 967405 . C T 3374.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.18;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3374,363,0 chrVII 967437 . T C 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.682;QD=22.66;ReadPosRankSum=1.707;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3228,357,0 chrVII 967530 . A G 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=149;Dels=0.01;FS=8.589;HaplotypeScore=28.6312;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.510;QD=22.02;ReadPosRankSum=2.399;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:3281,372,0 chrVII 967596 . T C 4094.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.13;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4094,465,0 chrVII 967662 . C T 4319.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.82;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4319,462,0 chrVII 967708 . G A 4047.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.0638;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=23.26;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4047,426,0 chrVII 967722 . T A 3963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=172;Dels=0.00;FS=3.112;HaplotypeScore=5.5057;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=0.926;QD=23.04;ReadPosRankSum=1.712;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3963,423,0 chrVII 967812 . A G 3383.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6328;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.63;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3383,387,0 chrVII 968214 . A G 4988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=220;Dels=0.00;FS=4.674;HaplotypeScore=7.4282;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.472;QD=22.67;ReadPosRankSum=1.701;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4988,579,0 chrVII 968262 . T C 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=194;Dels=0.00;FS=2.929;HaplotypeScore=9.7912;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.348;QD=21.76;ReadPosRankSum=2.361;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4221,474,0 chrVII 968274 . T C 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=0.877;QD=21.25;ReadPosRankSum=1.711;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3464,402,0 chrVII 968343 . G A 3693.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.3427;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.47;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3693,399,0 chrVII 968486 . T C 4720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.364;DP=201;Dels=0.00;FS=8.054;HaplotypeScore=17.6114;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=1.811;QD=23.48;ReadPosRankSum=3.328;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:4,195:201:99:4720,531,0 chrVII 968764 . C T 1888 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=17.16;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1921,210,0 chrVII 968902 . T G 189.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.292;DP=120;Dels=0.00;FS=1.088;HaplotypeScore=104.5158;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-1.107;QD=1.58;ReadPosRankSum=-3.849;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,18:120:99:219,0,132 chrVII 969262 . T C 4545.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.3541;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.04;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4545,522,0 chrVII 969304 . T C 3838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.164;QD=21.44;ReadPosRankSum=1.713;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3838,432,0 chrVII 969533 . C T 4213.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.17;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4213,462,0 chrVII 969646 . C T 4121.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.35;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4121,433,0 chrVII 969656 . C G 3708.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.37;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:3708,417,0 chrVII 969745 . C T 3772.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.39;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3772,405,0 chrVII 969753 . A G 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=188;Dels=0.00;FS=9.759;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=0.277;QD=18.64;ReadPosRankSum=2.962;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:3,182:188:99:3504,393,0 chrVII 969883 . A G 4387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=196;Dels=0.00;FS=9.168;HaplotypeScore=15.8671;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-1.182;QD=22.38;ReadPosRankSum=2.964;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:3,190:196:99:4387,501,0 chrVII 969927 . C T 4413.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.73;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4413,483,0 chrVII 970084 . A G 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.449;QD=20.73;ReadPosRankSum=1.706;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2852,324,0 chrVII 970088 . G A 2816 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.41;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2849,312,0 chrVII 970290 . A T 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=166;Dels=0.00;FS=5.211;HaplotypeScore=12.1741;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.482;QD=24.07;ReadPosRankSum=0.167;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3996,426,0 chrVII 970433 . A G 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.325;QD=21.13;ReadPosRankSum=2.410;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:2,123:127:99:2716,303,0 chrVII 970857 . C T 3998.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.8967;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3998,426,0 chrVII 971296 . G A 5388.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.38;SB=-2.923e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5388,591,0 chrVII 971305 . A G 5153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.402;DP=242;Dels=0.00;FS=9.119;HaplotypeScore=10.6644;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=0.018;QD=21.29;ReadPosRankSum=3.380;SB=-3.077e+03 GT:AD:DP:GQ:PL 1/1:4,235:242:99:5153,567,0 chrVII 971377 . T G 4509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=212;Dels=0.00;FS=2.878;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-1.323;QD=21.27;ReadPosRankSum=2.343;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:2,205:212:99:4509,525,0 chrVII 971401 . A G 4829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=214;Dels=0.00;FS=7.373;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=0.006;QD=22.57;ReadPosRankSum=2.426;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:2,210:214:99:4829,552,0 chrVII 971467 . C G 4497.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=10.0950;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=19.06;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:4497,510,0 chrVII 971479 . C T 4816.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=12.0660;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=19.82;SB=-3.014e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:4816,516,0 chrVII 971671 . A G 4661.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.0109;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=20.90;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4661,525,0 chrVII 971686 . C T 4640.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.5629;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=20.53;SB=-2.795e+03 GT:AD:DP:GQ:PL 1/1:0,222:226:99:4640,501,0 chrVII 971719 . C T 5031.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=8.3306;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.29;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5031,552,0 chrVII 971746 . C T 5466.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=11.8106;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.94;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,258:261:99:5466,589,0 chrVII 971914 . A G 5087.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=21.65;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5087,576,0 chrVII 971955 . G A 5131.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=14.8643;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.56;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5131,552,0 chrVII 972004 . G A 4754.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.7726;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.61;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4754,522,0 chrVII 972150 . A G 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=183;Dels=0.00;FS=10.989;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;MQRankSum=-0.195;QD=18.43;ReadPosRankSum=2.396;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3373,381,0 chrVII 972160 . T C 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.357;DP=170;Dels=0.00;FS=4.873;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;MQRankSum=-1.372;QD=17.24;ReadPosRankSum=3.357;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:4,166:170:99:2963,336,0 chrVII 972181 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=16.45;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2878,315,0 chrVII 972184 . A G 2542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=4.771;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;MQRankSum=-0.922;QD=14.69;ReadPosRankSum=1.692;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:2575,300,0 chrVII 972196 . G A 3319.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=46.71;MQ0=0;QD=16.43;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:3319,369,0 chrVII 972317 . G A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.1782;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=20.03;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4206,447,0 chrVII 972322 . T C 4083.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.6440;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=18.56;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4083,450,0 chrVII 972400 . A G 5208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=259;Dels=0.00;FS=5.992;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=-0.737;QD=20.11;ReadPosRankSum=2.949;SB=-3.086e+03 GT:AD:DP:GQ:PL 1/1:3,253:259:99:5208,591,0 chrVII 972424 . C G 5048.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=20.52;SB=-3.091e+03 GT:AD:DP:GQ:PL 1/1:0,243:246:99:5048,564,0 chrVII 972439 . G A 5244.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=10.8140;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.48;SB=-3.095e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5244,576,0 chrVII 972982 . G A 3279.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.8283;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.44;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,183:188:99:3279,360,0 chrVII 973057 . G A 5218.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=14.5798;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.83;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5218,573,0 chrVII 973111 . A G 4037.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=16.8331;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.03;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4037,462,0 chrVII 973688 . A G 2898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=136;Dels=0.02;FS=0.000;HaplotypeScore=8.8539;MLEAC=2;MLEAF=1.00;MQ=61.03;MQ0=0;MQRankSum=-1.315;QD=21.31;ReadPosRankSum=1.706;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2931,333,0 chrVII 973795 . G A 2157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.303;HaplotypeScore=3.3868;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.414;QD=23.45;ReadPosRankSum=1.694;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2190,243,0 chrVII 973814 . C T 2320 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.42;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2353,246,0 chrVII 974071 . C T 1871 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.02;FS=0.000;HaplotypeScore=7.9942;MLEAC=2;MLEAF=1.00;MQ=60.46;MQ0=0;QD=21.26;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1904,207,0 chrVII 974385 . T A 3280.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.47;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3280,366,0 chrVII 974639 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.4826;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.63;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3133,342,0 chrVII 974684 . A T 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=3.979;HaplotypeScore=9.0261;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.457;QD=23.37;ReadPosRankSum=1.649;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2978,327,0 chrVII 975047 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.1246;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=18.67;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3789,423,0 chrVII 975054 . T C 3778.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=17.74;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:3778,441,0 chrVII 975265 . A C 4255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=21.8567;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.534;QD=21.60;ReadPosRankSum=-0.343;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,191:197:99:4255,477,0 chrVII 975463 . G A 4370.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.88;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4370,468,0 chrVII 975499 . T A 4356.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=24.61;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4356,468,0 chrVII 975632 . C T 2488 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=25.8529;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=17.90;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2521,270,0 chrVII 975694 . G A 2650 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.49;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2683,297,0 chrVII 975698 . T A 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.879;QD=19.14;ReadPosRankSum=1.707;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2674,285,0 chrVII 975724 . G A 2487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.829;HaplotypeScore=5.6669;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.189;QD=19.13;ReadPosRankSum=-0.054;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2520,282,0 chrVII 975940 . T G 3340.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.3770;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.27;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3340,375,0 chrVII 976015 . T C 3969.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.05;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3969,447,0 chrVII 976270 . C T 5361.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=14.4869;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.93;SB=-3.349e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5361,574,0 chrVII 976312 . T C 5898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=280;Dels=0.00;FS=6.553;HaplotypeScore=9.0593;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-0.711;QD=21.06;ReadPosRankSum=2.361;SB=-3.303e+03 GT:AD:DP:GQ:PL 1/1:2,276:280:99:5898,651,0 chrVII 976327 . A G 5845.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=8.7551;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.03;SB=-2.963e+03 GT:AD:DP:GQ:PL 1/1:0,277:278:99:5845,669,0 chrVII 976931 . T C 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.4556;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.523;QD=22.08;ReadPosRankSum=1.699;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2396,279,0 chrVII 977164 . G A 2534 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.4757;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.84;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2567,285,0 chrVII 977677 . A G 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=115;Dels=0.00;FS=5.708;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=0.307;QD=21.95;ReadPosRankSum=2.851;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2557,288,0 chrVII 977855 . A T 1252 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.56;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1285,138,0 chrVII 977933 . T A 441 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=18.37;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:51:474,51,0 chrVII 978594 . T C 4021.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.4427;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:4021,450,0 chrVII 979414 . G A 4107.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.88;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4107,435,0 chrVII 979545 . A G 3673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=3.274;HaplotypeScore=9.1656;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.555;QD=23.85;ReadPosRankSum=1.664;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3673,414,0 chrVII 979666 . C G 4164.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.63;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4164,456,0 chrVII 979683 . A C 3960.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=21.29;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3960,453,0 chrVII 979856 . C T 4620.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.3320;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.57;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4620,496,0 chrVII 980008 . T C 4860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=22.0283;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.546;QD=21.41;ReadPosRankSum=1.717;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:1,223:227:99:4860,546,0 chrVII 980656 . C T 5008.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=19.1433;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.44;SB=-3.052e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5008,546,0 chrVII 980704 . T C 3738.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.99;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3738,432,0 chrVII 980911 . A G 3318.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.1162;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=20.87;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3318,384,0 chrVII 981471 . A G 2208 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.64;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2241,252,0 chrVII 981478 . A G 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-0.210;QD=20.84;ReadPosRankSum=1.667;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2284,258,0 chrVII 981619 . A G 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=168;Dels=0.00;FS=4.849;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.629;QD=23.08;ReadPosRankSum=1.547;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3878,426,0 chrVII 981928 . C T 3400.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=18.99;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3400,378,0 chrVII 981937 . G A 3430.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.54;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3430,378,0 chrVII 982079 . C T 2528 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.39;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2561,276,0 chrVII 982112 . C T 2286 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.23;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2319,252,0 chrVII 982548 . G A 4500.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.06;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4500,504,0 chrVII 982668 . A T 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.8054;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.401;QD=19.27;ReadPosRankSum=1.669;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:4277,462,0 chrVII 982687 . C T 3876.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.8269;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=18.37;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:3876,414,0 chrVII 983015 . A T 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=172;Dels=0.00;FS=5.549;HaplotypeScore=16.7863;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.643;QD=22.38;ReadPosRankSum=2.889;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:3849,411,0 chrVII 983061 . G C 3555.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.2762;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=19.01;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:3555,405,0 chrVII 983091 . G C 2836 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.10;MQ0=0;QD=14.85;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:2869,318,0 chrVII 983103 . A G 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.67;MQ0=0;MQRankSum=-1.435;QD=14.14;ReadPosRankSum=1.715;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:2832,324,0 chrVII 983112 . G A 2767 SnpCluster AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.30;MQ0=0;QD=14.49;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:2800,306,0 chrVII 983114 . T C 2488 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.75;MQ0=0;MQRankSum=-0.546;QD=13.45;ReadPosRankSum=1.694;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:2521,279,0 chrVII 983122 . G C 2043 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.02;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2076,231,0 chrVII 983124 . A T 2160 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.020;QD=12.71;ReadPosRankSum=1.712;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:2193,231,0 chrVII 983125 . A G 2024 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=11.84;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:2057,231,0 chrVII 983126 . C T 2134 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.08;MQ0=0;QD=12.34;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2167,231,0 chrVII 983164 . C T 2305 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;QD=14.32;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2338,246,0 chrVII 983306 . A G 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.4434;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;MQRankSum=-0.133;QD=21.92;ReadPosRankSum=1.712;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3748,414,0 chrVII 983363 . A G 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=0.490;QD=21.84;ReadPosRankSum=1.708;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3221,354,0 chrVII 983460 . T G 3385.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.6566;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.42;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3385,393,0 chrVII 983588 . G A 3643.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.3293;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.08;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3643,393,0 chrVII 983919 . T C 6089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=17.6912;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.058;QD=23.15;ReadPosRankSum=1.706;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:1,261:263:99:6089,675,0 chrVII 984084 . A G 6147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=281;Dels=0.00;FS=5.918;HaplotypeScore=21.2147;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.229;QD=21.88;ReadPosRankSum=2.896;SB=-3.237e+03 GT:AD:DP:GQ:PL 1/1:3,277:281:99:6147,693,0 chrVII 984165 . A G 4083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.166;DP=202;Dels=0.00;FS=8.037;HaplotypeScore=18.8167;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.030;QD=20.21;ReadPosRankSum=3.400;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:4,198:202:99:4083,462,0 chrVII 984362 . C T 4190.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.54;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4190,439,0 chrVII 984558 . T C 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=3.724;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.181;QD=20.49;ReadPosRankSum=1.601;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2738,309,0 chrVII 984603 . G A 3628.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.86;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3628,390,0 chrVII 984677 . A G 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=131;Dels=0.00;FS=2.752;HaplotypeScore=11.2167;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-1.088;QD=18.15;ReadPosRankSum=2.336;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2411,270,0 chrVII 984687 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.46;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2174,237,0 chrVII 984741 . T C 1949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=12.2489;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.209;QD=19.49;ReadPosRankSum=1.539;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1982,228,0 chrVII 984781 . T A 2859 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2892,309,0 chrVII 984935 . T C 4137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.270;DP=176;Dels=0.00;FS=2.384;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=1.013;QD=23.51;ReadPosRankSum=3.410;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:4,171:176:99:4137,456,0 chrVII 985136 . C T 6370.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=9.0769;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.95;SB=-3.515e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:6370,682,0 chrVII 985210 . T C 7159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=320;Dels=0.00;FS=14.665;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.341;QD=22.37;ReadPosRankSum=3.374;SB=-3.416e+03 GT:AD:DP:GQ:PL 1/1:4,315:320:99:7159,810,0 chrVII 985232 . T C 7013.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=12.6477;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.32;SB=-3.614e+03 GT:AD:DP:GQ:PL 1/1:0,329:329:99:7013,780,0 chrVII 985352 . G A 4782.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=21.16;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4782,519,0 chrVII 985397 . C T 4119.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=17.99;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4119,447,0 chrVII 985412 . T G 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=254;Dels=0.00;FS=3.927;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-1.634;QD=16.39;ReadPosRankSum=1.718;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:1,246:254:99:4162,480,0 chrVII 985520 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.5522;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.12;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2968,318,0 chrVII 985797 . C T 1504 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=25.49;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1537,162,0 chrVII 985817 . G A 1434 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.09;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1467,168,0 chrVII 985834 . T A 1137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=0.208;QD=14.58;ReadPosRankSum=2.354;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1170,132,0 chrVII 986049 . A C 4412.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.5643;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.22;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4412,504,0 chrVII 986118 . G A 4187.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.66;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4187,450,0 chrVII 986380 . A T 5964.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=15.4170;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.15;SB=-2.972e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5964,648,0 chrVII 986411 . T G 5905.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=15.6287;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.94;SB=-3.377e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:5905,681,0 chrVII 986601 . T C 6147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-1.062;QD=22.43;ReadPosRankSum=1.707;SB=-3.536e+03 GT:AD:DP:GQ:PL 1/1:1,273:274:99:6147,693,0 chrVII 986763 . T A 4776.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.42;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4776,516,0 chrVII 986764 . G T 4727.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.29;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4727,513,0 chrVII 986874 . G A 4960.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.5521;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.18;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4960,534,0 chrVII 986998 . C A 2973 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=23.41;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3006,327,0 chrVII 987032 . C A 3935.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.01;FS=0.000;HaplotypeScore=10.7316;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.99;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3935,415,0 chrVII 987228 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.18;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2850,306,0 chrVII 987273 . A G 2244 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.78;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2277,261,0 chrVII 987364 . A T 598 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.05;FS=0.000;HaplotypeScore=49.6710;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=4.94;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:69:631,69,0 chrVII 987417 . T C 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=115;Dels=0.00;FS=3.008;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.508;QD=19.71;ReadPosRankSum=2.407;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2300,258,0 chrVII 987450 . T C 2957 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.97;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2990,336,0 chrVII 987489 . A G 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.230;QD=20.28;ReadPosRankSum=1.640;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2365,267,0 chrVII 987590 . C T 3116 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=20.10;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3149,345,0 chrVII 987595 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=19.72;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3273,348,0 chrVII 987713 . A G 2030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=2.689;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=-2.198;QD=23.07;ReadPosRankSum=2.394;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:2063,228,0 chrVII 987788 . T G 1608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=79;Dels=0.00;FS=10.414;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-0.787;QD=20.35;ReadPosRankSum=1.597;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:1,76:79:99:1641,186,0 chrVII 987829 . T C 1340 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=19.14;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,67:70:99:1373,153,0 chrVII 987893 . C T 623 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=14.16;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:75:656,75,0 chrVII 987900 . T G 439 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=35.89;MQ0=0;QD=11.86;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,36:37:54:472,54,0 chrVII 987926 . G A 497 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=15.06;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:60:530,60,0 chrVII 987961 . A G 1044 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=17.11;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1077,120,0 chrVII 987973 . G A 1113 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=16.86;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1146,120,0 chrVII 987979 . C T 1165 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=16.64;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1198,126,0 chrVII 988018 . A G 1322 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=17.86;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1355,150,0 chrVII 988059 . A T 1598 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=23.16;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1631,174,0 chrVII 988087 . T G 1648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-1.183;QD=19.86;ReadPosRankSum=2.891;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1681,189,0 chrVII 988108 . T C 1793 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.70;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1826,207,0 chrVII 988162 . T C 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.312;QD=21.14;ReadPosRankSum=1.657;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2972,342,0 chrVII 988195 . T C 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.5288;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=1.066;QD=21.24;ReadPosRankSum=1.643;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3313,375,0 chrVII 988248 . G A 3646.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.99;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3646,381,0 chrVII 988333 . C T 3071 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.6650;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.42;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3104,333,0 chrVII 988432 . T C 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=19.6974;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.221;QD=21.99;ReadPosRankSum=1.713;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4025,456,0 chrVII 988609 . T C 5116.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.4857;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=22.94;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5116,585,0 chrVII 988732 . T G 4180.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=19.7058;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.17;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4180,471,0 chrVII 988808 . G C 3457.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=7.5088;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;QD=15.16;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:3457,399,0 chrVII 988813 . A G 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.817;DP=223;Dels=0.00;FS=11.888;HaplotypeScore=1.9841;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;MQRankSum=-2.021;QD=15.25;ReadPosRankSum=3.782;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:5,217:223:99:3401,390,0 chrVII 988821 . C T 3491.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=15.45;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:3491,381,0 chrVII 988846 . C A 3133 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=15.59;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:3166,336,0 chrVII 988864 . C T 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=206;Dels=0.00;FS=3.118;HaplotypeScore=3.3471;MLEAC=2;MLEAF=1.00;MQ=42.02;MQ0=0;MQRankSum=-0.634;QD=13.76;ReadPosRankSum=0.211;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:2867,303,0 chrVII 988930 . A G 2537 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.157;DP=183;Dels=0.00;FS=15.417;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;MQRankSum=-2.472;QD=13.86;ReadPosRankSum=4.157;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:6,177:183:99:2570,294,0 chrVII 988931 . G A 2698 SnpCluster AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=15.07;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:2731,294,0 chrVII 988933 . C T 2720 SnpCluster AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=14.86;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:2753,297,0 chrVII 989178 . C A 4279.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=24.73;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4279,459,0 chrVII 989276 . C T 4700.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=24.61;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4700,513,0 chrVII 989297 . C T 4315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=210;Dels=0.00;FS=4.876;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=-1.384;QD=20.55;ReadPosRankSum=1.666;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:4315,471,0 chrVII 989305 . T C 4418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=8.7018;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=0.067;QD=18.56;ReadPosRankSum=2.419;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:4418,492,0 chrVII 989383 . G A 4400.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.15;SB=-2.795e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4400,468,0 chrVII 989564 . C G 3668.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.96;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3668,411,0 chrVII 989610 . A G 2723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.112;DP=131;Dels=0.00;FS=2.593;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.047;QD=20.79;ReadPosRankSum=2.393;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2756,309,0 chrVII 989918 . T C 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=-1.588;QD=19.83;ReadPosRankSum=1.708;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,143:145:99:2908,327,0 chrVII 989922 . G T 2976 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=19.84;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3009,324,0 chrVII 990540 . A C 3160 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.07;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3193,366,0 chrVII 990823 . T C 2958 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.91;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2991,333,0 chrVII 990841 . C A 3194 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.49;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3227,345,0 chrVII 990971 . A T 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.841;DP=94;Dels=0.00;FS=3.045;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.940;QD=21.64;ReadPosRankSum=2.291;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2067,228,0 chrVII 991010 . G A 2431 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.15;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2464,258,0 chrVII 991202 . T C 2948 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.21;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2981,339,0 chrVII 991590 . T A 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=144;Dels=0.00;FS=2.725;HaplotypeScore=6.2893;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.074;QD=24.72;ReadPosRankSum=2.381;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3559,396,0 chrVII 991971 . C T 4621.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.32;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4621,495,0 chrVII 992004 . A G 4045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=187;Dels=0.00;FS=5.308;HaplotypeScore=9.1243;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.136;QD=21.63;ReadPosRankSum=2.799;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:3,183:187:99:4045,451,0 chrVII 992567 . C T 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.940;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.7626;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-0.668;QD=24.17;ReadPosRankSum=-0.509;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3747,386,0 chrVII 992889 . T C 3818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=161;Dels=0.00;FS=3.027;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.559;QD=23.71;ReadPosRankSum=2.388;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3818,426,0 chrVII 992937 . T C 3754.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.1930;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.35;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3754,420,0 chrVII 993021 . C A 3474.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.32;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3474,375,0 chrVII 993196 . C T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.59;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3389,360,0 chrVII 993539 . C T 2067 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.50;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2100,228,0 chrVII 993545 . G T 1996 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.19;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2029,216,0 chrVII 994049 . C A 3777.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.22;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3777,414,0 chrVII 994097 . A G 3348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.620;QD=21.46;ReadPosRankSum=1.710;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3348,375,0 chrVII 994263 . C A 2960 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.35;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2993,321,0 chrVII 994272 . C T 2714 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.85;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2747,300,0 chrVII 994364 . T C 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=1.436;QD=20.99;ReadPosRankSum=1.669;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3464,387,0 chrVII 994410 . A G 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=3.267;HaplotypeScore=6.6219;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.299;QD=19.26;ReadPosRankSum=1.712;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3370,387,0 chrVII 994491 . G A 5004.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.8860;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=24.65;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5004,529,0 chrVII 994520 . C G 4833.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.3009;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.12;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4833,537,0 chrVII 994797 . G A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1451;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=21.45;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3475,384,0 chrVII 994814 . T A 3051 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.07;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3084,342,0 chrVII 994826 . G A 3139 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.2427;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.25;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3172,336,0 chrVII 994883 . A G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.9700;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.210;QD=16.47;ReadPosRankSum=1.669;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,165:167:99:2783,318,0 chrVII 994986 . G C 3134 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.18;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3167,357,0 chrVII 995040 . G A 3201 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.06;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3234,369,0 chrVII 995121 . G T 2407 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.57;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2440,264,0 chrVII 995153 . C T 2552 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.8034;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.78;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2585,285,0 chrVII 995225 . C A 3831.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.5565;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.94;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3831,411,0 chrVII 995313 . G T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.46;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3589,384,0 chrVII 995359 . G A 3803.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.77;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3803,411,0 chrVII 995575 . A G 4938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=202;Dels=0.00;FS=3.615;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.680;QD=24.45;ReadPosRankSum=1.715;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4938,543,0 chrVII 995616 . A G 4837.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.3255;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.14;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4837,549,0 chrVII 995719 . A C 4513.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4513,522,0 chrVII 996064 . C T 3723.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.5463;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.27;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3723,411,0 chrVII 996431 . T C 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.2278;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=1.632;QD=20.95;ReadPosRankSum=1.707;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2945,327,0 chrVII 996699 . G A 2526 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.39;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2559,273,0 chrVII 996868 . G T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;QD=24.47;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3402,372,0 chrVII 997222 . T G 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=163;Dels=0.00;FS=3.021;HaplotypeScore=6.8253;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-0.760;QD=19.60;ReadPosRankSum=2.404;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:2,158:163:99:3227,369,0 chrVII 997225 . A G 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=158;Dels=0.00;FS=13.131;HaplotypeScore=5.3026;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-1.356;QD=20.38;ReadPosRankSum=3.337;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:4,154:158:99:3253,354,0 chrVII 997667 . C T 3383.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.99;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3383,360,0 chrVII 997840 . A G 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=147;Dels=0.00;FS=3.040;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.127;QD=21.66;ReadPosRankSum=2.382;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:3217,372,0 chrVII 997864 . C T 3397.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.20;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3397,363,0 chrVII 998751 . T C 7386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.740;DP=322;Dels=0.00;FS=2.532;HaplotypeScore=14.7313;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.245;QD=22.94;ReadPosRankSum=2.915;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:3,317:321:99:7386,843,0 chrVII 999059 . A G 4919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.790;DP=232;Dels=0.00;FS=12.066;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.659;QD=21.20;ReadPosRankSum=4.984;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:9,222:232:99:4919,543,0 chrVII 999157 . A C 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=152;Dels=0.00;FS=8.040;HaplotypeScore=15.2123;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.311;QD=19.84;ReadPosRankSum=1.920;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:4,145:152:99:3048,328,0 chrVII 999229 . T C 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=3.492;HaplotypeScore=10.4283;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.248;QD=23.46;ReadPosRankSum=1.684;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3402,381,0 chrVII 999313 . A G 1763 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=86;Dels=0.00;FS=2.780;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-0.788;QD=20.50;ReadPosRankSum=2.393;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1796,201,0 chrVII 999317 . A G 1714 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=81;Dels=0.00;FS=5.340;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.512;QD=21.16;ReadPosRankSum=3.259;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:4,77:81:99:1747,198,0 chrVII 999319 . G C 1717 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=22.30;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1750,195,0 chrVII 999392 . C T 1422 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=18.47;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1455,156,0 chrVII 999427 . C T 1350 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=19.57;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1383,156,0 chrVII 999483 . G C 1263 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.05;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1296,150,0 chrVII 999528 . T C 738 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=4.0676;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.09;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:771,87,0 chrVII 999553 . T A 147.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.122;DP=23;Dels=0.00;FS=16.250;HaplotypeScore=4.9154;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;MQRankSum=0.608;QD=6.39;ReadPosRankSum=1.014;SB=-1.361e+02 GT:AD:DP:GQ:PL 1/1:4,19:23:21:180,21,0 chrVII 999559 . T A 70.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.362;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;MQRankSum=0.990;QD=2.52;ReadPosRankSum=1.609;SB=-2.275e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:12:103,12,0 chrVII 999604 . A G 619 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=9.98;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:78:652,78,0 chrVII 999629 . T G 648 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=9.67;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:78:681,78,0 chrVII 999630 . G A 733 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=10.94;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:81:766,81,0 chrVII 999647 . A G 883 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=10.64;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:916,102,0 chrVII 999668 . G C 970 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=11.15;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1003,111,0 chrVII 999807 . T C 3973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.363;DP=163;Dels=0.00;FS=5.248;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-1.432;QD=24.37;ReadPosRankSum=3.406;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:4,159:163:99:3973,444,0 chrVII 1000433 . A G 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=143;Dels=0.00;FS=7.586;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.473;QD=19.20;ReadPosRankSum=2.398;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2779,315,0 chrVII 1000436 . G A 2739 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=19.02;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2772,312,0 chrVII 1000645 . C T 3360.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.9333;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=22.55;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3360,354,0 chrVII 1000659 . T C 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=3.578;HaplotypeScore=7.9826;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-0.972;QD=20.07;ReadPosRankSum=1.620;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3144,348,0 chrVII 1000855 . C T 4302.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.4480;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.87;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4302,453,0 chrVII 1001631 . T C 4021.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.074;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=15.3743;MLEAC=2;MLEAF=1.00;MQ=34.22;MQ0=28;MQRankSum=-2.130;QD=16.15;ReadPosRankSum=1.707;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:3,240:249:99:4021,449,0 chrVII 1001650 . A G 3588.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=35.97;MQ0=27;MQRankSum=-1.264;QD=15.67;ReadPosRankSum=1.715;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,226:229:99:3588,399,0 chrVII 1002500 . G A 2843 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.11;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2876,309,0 chrVII 1002934 . A G 5037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=14.5233;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-1.588;QD=20.73;ReadPosRankSum=1.675;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:1,240:243:99:5037,591,0 chrVII 1002965 . G A 4119.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.3347;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=19.61;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4119,456,0 chrVII 1002984 . C G 3675.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.86;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3675,408,0 chrVII 1003026 . T C 3523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.706;QD=19.57;ReadPosRankSum=1.713;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3523,396,0 chrVII 1003201 . G C 4299.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.87;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4299,480,0 chrVII 1003306 . C T 3460.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.76;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3460,381,0 chrVII 1003414 . T C 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=160;Dels=0.00;FS=15.799;HaplotypeScore=13.5429;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.449;QD=21.00;ReadPosRankSum=2.880;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:3,156:160:99:3360,378,0 chrVII 1004074 . C T 3706.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.04;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3706,405,0 chrVII 1004183 . C G 2446 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.86;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2479,276,0 chrVII 1004378 . G A 958 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.77;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:991,108,0 chrVII 1004379 . A G 912 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.73;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:945,108,0 chrVII 1004505 . C T 281 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.07;SB=-8.900e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:36:314,36,0 chrVII 1004566 . G A 1363 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.34;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1396,153,0 chrVII 1004716 . G A 1688 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.81;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1721,195,0 chrVII 1005136 . C T 4549.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.3204;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.26;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4549,492,0 chrVII 1005907 . T G 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.8133;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;MQRankSum=0.165;QD=22.51;ReadPosRankSum=1.670;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3781,441,0 chrVII 1006073 . A G 2845 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.9220;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=19.22;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2878,327,0 chrVII 1006084 . C T 2787 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=19.09;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2820,303,0 chrVII 1006107 . T C 2193 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.67;MQ0=0;QD=16.12;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,132:136:99:2226,246,0 chrVII 1006113 . G A 2125 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;QD=17.28;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2158,228,0 chrVII 1006156 . G A 1683 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=15.03;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:1716,186,0 chrVII 1006229 . T C 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=17.2957;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.141;QD=22.43;ReadPosRankSum=2.420;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3746,429,0 chrVII 1006351 . A G 2728 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=20.06;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2761,312,0 chrVII 1006496 . G A 4227.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.7167;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.85;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4227,468,0 chrVII 1006715 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.4096;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.22;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3529,375,0 chrVII 1006748 . C T 3804.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.05;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3804,417,0 chrVII 1006825 . G C 3350.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.47;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3350,381,0 chrVII 1006862 . G A 2457 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.00;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2490,270,0 chrVII 1006922 . G C 3049 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.47;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3082,357,0 chrVII 1006976 . C T 3899.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.78;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3899,417,0 chrVII 1007272 . A G 6037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=281;Dels=0.00;FS=2.866;HaplotypeScore=16.3287;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.057;QD=21.48;ReadPosRankSum=2.406;SB=-3.020e+03 GT:AD:DP:GQ:PL 1/1:2,278:281:99:6037,675,0 chrVII 1007547 . C A 5083.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=23.64;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5083,555,0 chrVII 1007580 . A G 3697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.1015;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.324;QD=19.66;ReadPosRankSum=1.714;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:3697,417,0 chrVII 1007596 . G A 3628.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.16;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3628,384,0 chrVII 1007788 . C G 3023 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.29;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:3056,348,0 chrVII 1007806 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.73;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3296,372,0 chrVII 1008097 . A G 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=3.335;HaplotypeScore=7.1866;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.513;QD=21.62;ReadPosRankSum=1.704;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2736,309,0 chrVII 1008148 . A G 2776 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.8807;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.53;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2809,312,0 chrVII 1008259 . T C 3321.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.89;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3321,366,0 chrVII 1008427 . C T 3645.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3645,393,0 chrVII 1008621 . T G 3075 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.81;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3108,345,0 chrVII 1008855 . A G 2791 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.33;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2824,312,0 chrVII 1008859 . T G 2710 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.17;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2743,312,0 chrVII 1009086 . C T 1926 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.7700;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.16;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1959,216,0 chrVII 1009263 . A G 2707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=141;Dels=0.00;FS=11.825;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.009;QD=19.20;ReadPosRankSum=2.379;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:2,137:141:99:2740,309,0 chrVII 1009276 . A G 2748 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.9688;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=19.35;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2781,318,0 chrVII 1009506 . A T 6174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=267;Dels=0.00;FS=3.177;HaplotypeScore=8.9924;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=-0.912;QD=23.12;ReadPosRankSum=1.719;SB=-3.406e+03 GT:AD:DP:GQ:PL 1/1:1,265:267:99:6174,664,0 chrVII 1009525 . T C 5724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=266;Dels=0.00;FS=3.076;HaplotypeScore=12.7151;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=0.078;QD=21.52;ReadPosRankSum=1.680;SB=-3.337e+03 GT:AD:DP:GQ:PL 1/1:1,265:266:99:5724,636,0 chrVII 1009617 . A G 4518.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.2350;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.48;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4518,501,0 chrVII 1009713 . C T 4323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=226;Dels=0.00;FS=3.979;HaplotypeScore=8.5753;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=0.661;QD=19.13;ReadPosRankSum=-0.740;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:1,221:226:99:4323,459,0 chrVII 1009717 . C G 3937.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.3564;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=18.31;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:3937,450,0 chrVII 1009948 . G C 3273.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=19.37;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3273,375,0 chrVII 1010455 . G C 2714 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.9835;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.39;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2747,321,0 chrVII 1010790 . A G 2237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.461;QD=19.97;ReadPosRankSum=2.362;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2270,252,0 chrVII 1010814 . G T 2730 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.00;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2763,294,0 chrVII 1010860 . G A 1851 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=18.15;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1884,204,0 chrVII 1010934 . C G 798 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=11.08;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:93:831,93,0 chrVII 1011002 . C A 153.06 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.03;FS=0.000;HaplotypeScore=10.3378;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;QD=2.59;SB=-7.141e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:21:186,21,0 chrVII 1011025 . G A 641 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=12.82;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:72:674,72,0 chrVII 1011163 . C G 1621 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;QD=15.01;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:1654,183,0 chrVII 1011166 . C A 1758 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=42.38;MQ0=0;QD=16.28;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1791,195,0 chrVII 1011188 . G C 426 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=79.3790;MLEAC=2;MLEAF=1.00;MQ=39.87;MQ0=0;QD=3.80;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:54:459,54,0 chrVII 1011203 . T C 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.0687;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;MQRankSum=-1.121;QD=12.26;ReadPosRankSum=2.406;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:1418,162,0 chrVII 1011283 . A G 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=149;Dels=0.00;FS=6.801;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=1.456;QD=20.77;ReadPosRankSum=2.416;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:2,144:149:99:3128,348,0 chrVII 1011408 . A G 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=1.429;QD=19.92;ReadPosRankSum=1.707;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2762,321,0 chrVII 1011503 . A G 1959 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.66;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1992,225,0 chrVII 1011639 . A G 1015 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1048,120,0 chrVII 1011792 . C T 914 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=17.58;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:947,102,0 chrVII 1011935 . C T 2552 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.09;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2585,279,0 chrVII 1012069 . T A 2958 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.3045;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.12;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2991,318,0 chrVII 1012507 . A T 8093.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=11.9969;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.28;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,307:308:99:8093,853,0 chrVII 1012544 . A G 6354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=258;Dels=0.00;FS=13.912;HaplotypeScore=12.2669;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.280;QD=24.63;ReadPosRankSum=2.392;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:2,254:258:99:6354,720,0 chrVII 1012663 . A T 8024.01 filter AC=2;AF=1.00;AN=2;DP=368;Dels=0.00;FS=0.000;HaplotypeScore=9.9787;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.80;SB=-4.674e+03 GT:AD:DP:GQ:PL 1/1:0,368:368:99:8024,900,0 chrVII 1012781 . A G 6743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=306;Dels=0.00;FS=5.590;HaplotypeScore=22.2341;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-0.281;QD=22.04;ReadPosRankSum=2.931;SB=-3.188e+03 GT:AD:DP:GQ:PL 1/1:3,300:306:99:6743,762,0 chrVII 1012976 . G A 4359.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=20.66;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4359,483,0 chrVII 1012997 . G T 4195.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.42;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4195,436,0 chrVII 1013000 . C G 3768.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=17.86;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:3768,420,0 chrVII 1013720 . C T 5770.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=19.9426;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.77;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,263:265:99:5770,616,0 chrVII 1013788 . C A 5054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=220;Dels=0.00;FS=5.209;HaplotypeScore=13.6757;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.720;QD=22.97;ReadPosRankSum=0.514;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:5054,546,0 chrVII 1013909 . G A 3835.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.31;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3835,423,0 chrVII 1014095 . A G 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=73.0454;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.705;QD=21.39;ReadPosRankSum=2.347;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2086,234,0 chrVII 1014256 . G A 1553 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.51;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1586,165,0 chrVII 1014663 . C G 2350 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.09;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2383,261,0 chrVII 1014774 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=150;Dels=0.00;FS=9.571;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.561;QD=21.52;ReadPosRankSum=2.872;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:3,146:150:99:3261,363,0 chrVII 1014835 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.8705;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.60;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3182,339,0 chrVII 1014918 . G A 3109 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3142,348,0 chrVII 1015016 . G A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3760,402,0 chrVII 1015147 . T G 2968 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3001,348,0 chrVII 1015602 . A C 3221.02 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3254,369,0 chrVII 1016067 . T C 4333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=192;Dels=0.00;FS=3.030;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-1.845;QD=22.57;ReadPosRankSum=2.372;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:2,189:192:99:4333,480,0 chrVII 1016085 . G T 4448.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.05;SB=-2.628e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4448,474,0 chrVII 1016165 . G A 3752.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.16;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3752,399,0 chrVII 1016195 . T C 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.643;QD=22.38;ReadPosRankSum=1.645;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3580,399,0 chrVII 1016232 . G A 4478.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.4865;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.95;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4478,486,0 chrVII 1016289 . A G 4498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=191;Dels=0.00;FS=2.994;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=1.855;QD=23.55;ReadPosRankSum=2.411;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4498,498,0 chrVII 1016394 . A G 3901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.732;QD=21.67;ReadPosRankSum=1.655;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3901,444,0 chrVII 1016553 . T G 3944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.557;QD=22.28;ReadPosRankSum=1.652;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:3944,444,0 chrVII 1016640 . A G 4139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=172;Dels=0.00;FS=7.722;HaplotypeScore=11.6634;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.236;QD=24.06;ReadPosRankSum=2.421;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:4139,462,0 chrVII 1016792 . A G 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.3781;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.384;QD=18.13;ReadPosRankSum=2.398;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:2662,303,0 chrVII 1016816 . T C 3320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=160;Dels=0.00;FS=6.982;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.894;QD=20.75;ReadPosRankSum=2.403;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3320,378,0 chrVII 1017295 . A G 5262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=249;Dels=0.00;FS=3.610;HaplotypeScore=17.5457;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.550;QD=21.13;ReadPosRankSum=1.704;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:1,247:249:99:5262,609,0 chrVII 1018075 . A G 2285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.044;QD=19.53;ReadPosRankSum=1.673;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2318,273,0 chrVII 1018767 . C A 2944 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2977,315,0 chrVII 1019116 . G C 3576.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.2894;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.07;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3576,402,0 chrVII 1019203 . A G 2543 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=17.30;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2576,291,0 chrVII 1019210 . A G 2359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-0.981;QD=16.38;ReadPosRankSum=1.708;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2392,270,0 chrVII 1019751 . C T 3746.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.27;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3746,399,0 chrVII 1019799 . G A 4495.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.78;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4495,483,0 chrVII 1020651 . A G 4224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.3992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.412;QD=21.44;ReadPosRankSum=1.661;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4224,483,0 chrVII 1020978 . G A 6443.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=12.6555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-2.972e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:6443,708,0 chrVII 1021064 . A G 5667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=263;Dels=0.00;FS=7.131;HaplotypeScore=11.3774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.042;QD=21.55;ReadPosRankSum=2.412;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:2,261:263:99:5667,624,0 chrVII 1021077 . C T 5451.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=20.81;SB=-2.999e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:5451,606,0 chrVII 1021448 . A G 4412.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.74;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4412,489,0 chrVII 1021490 . T C 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=4.120;HaplotypeScore=14.9792;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.592;QD=21.90;ReadPosRankSum=1.572;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,172:176:99:3855,435,0 chrVII 1021548 . C T 3865.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.6873;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.87;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3865,417,0 chrVII 1021741 . G A 3932.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.3480;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.42;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3932,423,0 chrVII 1021770 . T A 4015.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.94;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4015,423,0 chrVII 1021857 . T G 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.789;DP=130;Dels=0.00;FS=12.512;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.946;QD=20.41;ReadPosRankSum=2.946;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:3,126:130:99:2686,303,0 chrVII 1022119 . T C 1926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=96;Dels=0.00;FS=6.739;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.117;QD=20.06;ReadPosRankSum=2.398;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:2,93:96:99:1959,219,0 chrVII 1022181 . A T 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=3.245;HaplotypeScore=6.3527;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;MQRankSum=-0.383;QD=18.31;ReadPosRankSum=1.696;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1827,195,0 chrVII 1022196 . G A 1636 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.66;MQ0=0;QD=16.20;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1669,180,0 chrVII 1022301 . A G 2317 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=19.15;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2350,258,0 chrVII 1022645 . C T 2813 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.3839;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2846,306,0 chrVII 1022794 . A G 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=103;Dels=0.00;FS=3.019;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.040;QD=21.59;ReadPosRankSum=2.402;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2257,261,0 chrVII 1022816 . C T 2471 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.99;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2504,267,0 chrVII 1023234 . A T 4016.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4016,444,0 chrVII 1023277 . C T 4345.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=18.1300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4345,465,0 chrVII 1023336 . A G 4059.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.4982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4059,453,0 chrVII 1023576 . C T 5921.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=10.4943;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.57;SB=-2.837e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5921,628,0 chrVII 1023633 . G A 5462.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=15.2840;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.14;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5462,586,0 chrVII 1023685 . T C 4421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=194;Dels=0.00;FS=4.683;HaplotypeScore=15.1697;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.036;QD=22.79;ReadPosRankSum=1.714;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4421,498,0 chrVII 1023901 . G A 3427.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.3713;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3427,366,0 chrVII 1024005 . T C 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=131;Dels=0.00;FS=2.576;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.716;QD=23.18;ReadPosRankSum=2.900;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:3,128:131:99:3069,351,0 chrVII 1024185 . C T 4497.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.9200;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.31;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4497,480,0 chrVII 1024337 . G C 4055.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.28;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,178:182:99:4055,447,0 chrVII 1024488 . T C 3494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.494;QD=21.84;ReadPosRankSum=1.710;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3494,393,0 chrVII 1024702 . T C 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=140;Dels=0.00;FS=11.752;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.167;QD=22.22;ReadPosRankSum=2.935;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:3,136:140:99:3144,351,0 chrVII 1025033 . A G 1886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=113;Dels=0.02;FS=14.923;HaplotypeScore=31.2163;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.100;QD=16.69;ReadPosRankSum=2.882;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:3,108:111:99:1919,216,0 chrVII 1025187 . G C 3621.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.77;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3621,414,0 chrVII 1025709 . C T 5755.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.78;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5755,613,0 chrVII 1025761 . C A 4700.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.15;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4700,516,0 chrVII 1025900 . G A 4461.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4461,469,0 chrVII 1026195 . T C 7621.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=365;Dels=0.00;FS=5.833;HaplotypeScore=18.3336;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=0.110;QD=20.88;ReadPosRankSum=2.964;SB=-4.159e+03 GT:AD:DP:GQ:PL 1/1:3,361:365:99:7621,846,0 chrVII 1027098 . C T 2959 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2992,321,0 chrVII 1027279 . A G 3324.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.46;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3324,372,0 chrVII 1027359 . G A 4535.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.5785;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.34;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4535,501,0 chrVII 1027438 . T C 4408.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4408,516,0 chrVII 1027579 . T G 4881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.520;QD=22.19;ReadPosRankSum=1.716;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4881,543,0 chrVII 1027604 . A G 4647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=225;Dels=0.00;FS=3.069;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.162;QD=20.65;ReadPosRankSum=1.670;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:4647,531,0 chrVII 1027654 . G T 4978.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.6961;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.26;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4978,534,0 chrVII 1027936 . T C 4071.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.65;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4071,453,0 chrVII 1028014 . G A 4185.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.4655;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.38;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4185,453,0 chrVII 1028091 . G A 4072.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4072,435,0 chrVII 1028305 . T C 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=178;Dels=0.00;FS=2.867;HaplotypeScore=12.7155;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.395;QD=22.39;ReadPosRankSum=2.408;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3985,444,0 chrVII 1028485 . T C 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=162;Dels=0.00;FS=7.450;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.250;QD=21.96;ReadPosRankSum=2.404;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3557,411,0 chrVII 1028507 . A G 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.451;QD=22.07;ReadPosRankSum=1.712;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3841,429,0 chrVII 1028656 . G A 2765 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.69;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2798,312,0 chrVII 1029431 . C T 3887.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.9717;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.34;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3887,420,0 chrVII 1029502 . G A 2578 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=18.82;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2611,288,0 chrVII 1029507 . T C 2530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=0.493;QD=18.47;ReadPosRankSum=1.707;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2563,288,0 chrVII 1029664 . A T 3138 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.0764;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.24;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3171,339,0 chrVII 1030321 . A G 2562 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=18.70;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2595,300,0 chrVII 1030324 . C T 2759 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=21.06;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2792,300,0 chrVII 1030351 . T C 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-1.210;QD=19.87;ReadPosRankSum=1.705;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2536,285,0 chrVII 1030416 . G A 2831 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.4806;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.28;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2864,306,0 chrVII 1030489 . G A 2698 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=21.58;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2731,291,0 chrVII 1030492 . T C 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.010;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.866;QD=20.81;ReadPosRankSum=0.754;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2614,268,0 chrVII 1030794 . G A 2696 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=21.74;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2729,297,0 chrVII 1030897 . C T 3271.01 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.95;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3271,348,0 chrVII 1030898 . A G 3103 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.69;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3136,351,0 chrVII 1030902 . C T 3233.06 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.85;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3265,354,0 chrVII 1030970 . C T 3016 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.51;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3049,327,0 chrVII 1031011 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.61;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3282,366,0 chrVII 1031042 . T C 3921.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.6708;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=22.80;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3921,447,0 chrVII 1031103 . G A 3987.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.5903;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=23.45;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3987,432,0 chrVII 1031217 . A C 3067 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.55;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3100,354,0 chrVII 1031266 . A G 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=126;Dels=0.00;FS=6.123;HaplotypeScore=6.6880;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.448;QD=23.12;ReadPosRankSum=2.944;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2946,327,0 chrVII 1031287 . G A 2949 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.04;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2982,324,0 chrVII 1031636 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=7.0692;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.24;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2664,285,0 chrVII 1031685 . G A 3089 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=21.91;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3122,333,0 chrVII 1031725 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.16;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2870,312,0 chrVII 1031747 . G A 2716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=119;Dels=0.00;FS=4.091;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=1.145;QD=22.82;ReadPosRankSum=-1.145;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2749,306,0 chrVII 1031802 . A G 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=3.358;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=1.258;QD=22.62;ReadPosRankSum=1.643;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2679,297,0 chrVII 1031857 . A G 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=138;Dels=0.00;FS=2.907;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.461;QD=22.28;ReadPosRankSum=2.413;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:3108,351,0 chrVII 1031894 . C G 3227.04 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=23.90;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3260,369,0 chrVII 1031937 . T A 3073 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=22.11;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3106,330,0 chrVII 1031951 . G A 2540 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=19.39;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2573,273,0 chrVII 1031962 . A G 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=0.677;QD=18.18;ReadPosRankSum=1.651;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2360,267,0 chrVII 1032459 . C T 2892 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.22;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2925,327,0 chrVII 1033498 . A G 3541.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.14;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3541,402,0 chrVII 1033530 . G A 3097 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3130,345,0 chrVII 1033602 . T C 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.942;DP=136;Dels=0.00;FS=3.777;HaplotypeScore=8.9308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.025;QD=23.04;ReadPosRankSum=-1.732;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3167,332,0 chrVII 1033653 . A T 3738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=3.862;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.637;QD=25.26;ReadPosRankSum=1.590;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3738,402,0 chrVII 1033830 . G A 3887.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.2879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3887,423,0 chrVII 1034067 . T C 4183.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.1017;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.98;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4183,480,0 chrVII 1034541 . A G 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=109;Dels=0.00;FS=10.567;HaplotypeScore=8.8421;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.250;QD=23.06;ReadPosRankSum=2.843;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2547,282,0 chrVII 1034625 . T C 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=118;Dels=0.00;FS=6.133;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.368;QD=22.74;ReadPosRankSum=2.387;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2716,300,0 chrVII 1034846 . G A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3373,357,0 chrVII 1035138 . G A 4311.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.66;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4311,471,0 chrVII 1035498 . T C 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.290;DP=147;Dels=0.00;FS=15.296;HaplotypeScore=17.4604;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.235;QD=21.15;ReadPosRankSum=3.362;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:4,141:147:99:3142,360,0 chrVII 1035627 . A G 4031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.311;DP=178;Dels=0.00;FS=14.200;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-2.502;QD=22.65;ReadPosRankSum=3.410;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:4,173:178:99:4031,459,0 chrVII 1036371 . T C 3998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=174;Dels=0.00;FS=6.678;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.264;QD=22.98;ReadPosRankSum=2.407;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:3998,444,0 chrVII 1036677 . C T 5325.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.7749;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.10;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,217:221:99:5325,568,0 chrVII 1037301 . T C 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.464;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=15.6546;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.146;QD=23.45;ReadPosRankSum=1.708;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3354,375,0 chrVII 1037514 . A T 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=164;Dels=0.00;FS=3.403;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.855;QD=25.54;ReadPosRankSum=1.668;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:4189,436,0 chrVII 1037556 . A C 3499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.654;QD=22.87;ReadPosRankSum=1.503;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3499,393,0 chrVII 1037791 . A T 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=133;Dels=0.00;FS=8.911;HaplotypeScore=6.2491;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.786;QD=25.25;ReadPosRankSum=2.413;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3358,357,0 chrVII 1038433 . A G 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=4.079;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.260;QD=22.85;ReadPosRankSum=1.701;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2547,294,0 chrVII 1038689 . T C 2682 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2715,309,0 chrVII 1039298 . T G 2274 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.45;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2307,258,0 chrVII 1039378 . A C 1898 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.72;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1931,219,0 chrVII 1039425 . A C 2074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=85;Dels=0.00;FS=2.926;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.130;QD=24.40;ReadPosRankSum=2.392;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:2107,231,0 chrVII 1039460 . T C 2042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=0.318;QD=20.84;ReadPosRankSum=1.661;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2075,234,0 chrVII 1039470 . C G 2107 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.86;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2140,237,0 chrVII 1039568 . T A 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;MQRankSum=-1.652;QD=20.08;ReadPosRankSum=1.598;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2644,294,0 chrVII 1039575 . T C 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.162;DP=136;Dels=0.00;FS=2.334;HaplotypeScore=6.2365;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=-0.844;QD=17.99;ReadPosRankSum=3.355;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:4,132:136:99:2480,279,0 chrVII 1039621 . A G 2506 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=18.03;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2539,279,0 chrVII 1039634 . A T 2267 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=15.53;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2300,252,0 chrVII 1039642 . A G 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=143;Dels=0.00;FS=9.732;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=0.220;QD=15.76;ReadPosRankSum=2.415;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:2286,261,0 chrVII 1039678 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.56;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3117,333,0 chrVII 1039783 . T G 4393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=204;Dels=0.00;FS=6.352;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=-0.788;QD=21.53;ReadPosRankSum=2.388;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:2,199:204:99:4393,492,0 chrVII 1039805 . G A 3965.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.9573;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=20.76;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3965,444,0 chrVII 1040012 . C T 3883.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.01;FS=0.000;HaplotypeScore=7.0924;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.88;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3883,411,0 chrVII 1040013 . C T 3908.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.01;FS=0.000;HaplotypeScore=5.5150;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=21.12;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3908,414,0 chrVII 1040155 . G A 3602.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.0361;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.58;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3602,384,0 chrVII 1040351 . C T 3337.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.36;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3337,360,0 chrVII 1040573 . A G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.63;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3349,378,0 chrVII 1041343 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.8671;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.22;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3668,402,0 chrVII 1041395 . A G 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.2390;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-0.168;QD=21.47;ReadPosRankSum=1.620;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3371,378,0 chrVII 1041401 . T C 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=153;Dels=0.00;FS=7.417;HaplotypeScore=5.8164;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-0.105;QD=20.54;ReadPosRankSum=2.401;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3176,354,0 chrVII 1041632 . G A 3221.92 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.69;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3255,348,0 chrVII 1041701 . T C 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=126;Dels=0.00;FS=3.945;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.391;QD=21.98;ReadPosRankSum=1.648;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2802,315,0 chrVII 1041814 . A G 2722 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2755,306,0 chrVII 1041874 . T C 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.123;QD=21.61;ReadPosRankSum=1.705;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2799,315,0 chrVII 1042019 . C T 2165 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2198,237,0 chrVII 1042469 . T C 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.574;DP=154;Dels=0.00;FS=12.141;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.609;QD=22.45;ReadPosRankSum=3.791;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:5,147:154:99:3457,384,0 chrVII 1042643 . T G 5354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=15.2151;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.563;QD=22.88;ReadPosRankSum=1.717;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:5354,624,0 chrVII 1042826 . A G 6011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=278;Dels=0.00;FS=3.015;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.289;QD=21.62;ReadPosRankSum=2.432;SB=-3.232e+03 GT:AD:DP:GQ:PL 1/1:2,274:278:99:6011,693,0 chrVII 1043244 . A G 4941.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.6115;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.10;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4941,555,0 chrVII 1043272 . G A 4045.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.97;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4045,429,0 chrVII 1043347 . A C 3352.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.8689;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.77;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3352,375,0 chrVII 1043528 . A G 2830 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.8350;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.20;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2863,315,0 chrVII 1043695 . T C 1447 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1480,174,0 chrVII 1044068 . G C 3044 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.06;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3077,348,0 chrVII 1044161 . T C 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=184;Dels=0.00;FS=6.036;HaplotypeScore=13.7287;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-1.514;QD=21.34;ReadPosRankSum=2.939;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:3,179:184:99:3927,438,0 chrVII 1044266 . A C 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=135;Dels=0.00;FS=3.043;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.847;QD=21.52;ReadPosRankSum=1.680;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2938,333,0 chrVII 1044356 . T C 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.768;DP=188;Dels=0.00;FS=6.067;HaplotypeScore=8.4137;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-1.005;QD=18.86;ReadPosRankSum=2.779;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:3,184:188:99:3545,399,0 chrVII 1044371 . A G 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.0442;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-1.623;QD=18.28;ReadPosRankSum=1.623;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:3491,405,0 chrVII 1044698 . A T 3549.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.0836;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.18;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3549,384,0 chrVII 1044782 . A G 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=123;Dels=0.00;FS=6.128;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-0.185;QD=21.78;ReadPosRankSum=2.942;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:3,117:123:99:2712,303,0 chrVII 1044800 . T C 2510 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=21.27;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2543,288,0 chrVII 1044835 . C A 2781 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=17.94;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2814,300,0 chrVII 1044848 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.9062;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.04;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3137,333,0 chrVII 1044966 . T C 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=1.033;QD=23.95;ReadPosRankSum=1.674;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2907,318,0 chrVII 1045136 . T G 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.474;QD=21.65;ReadPosRankSum=1.703;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:2,120:124:99:2717,306,0 chrVII 1045190 . C T 3096 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.78;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3129,333,0 chrVII 1045214 . A T 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=3.568;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.063;QD=22.69;ReadPosRankSum=1.669;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3766,402,0 chrVII 1045298 . A T 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=164;Dels=0.01;FS=7.078;HaplotypeScore=9.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.873;QD=23.05;ReadPosRankSum=2.359;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3780,420,0 chrVII 1045427 . T C 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=3.225;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.273;QD=21.66;ReadPosRankSum=1.649;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3617,411,0 chrVII 1046178 . A C 5086.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:5086,561,0 chrVII 1046337 . G A 4440.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.8098;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4440,498,0 chrVII 1048969 . A G 4467.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4467,519,0 chrVII 1049349 . T C 6273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=295;Dels=0.00;FS=9.453;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.833;QD=21.26;ReadPosRankSum=2.433;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:2,288:295:99:6273,732,0 chrVII 1049507 . G A 5488.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=15.2854;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.86;SB=-2.939e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5488,589,0 chrVII 1050472 . T G 4091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.774;QD=21.65;ReadPosRankSum=1.677;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4091,468,0 chrVII 1051093 . T C 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.5230;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.780;QD=21.39;ReadPosRankSum=1.694;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3914,435,0 chrVII 1051154 . T C 5417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.783;QD=22.48;ReadPosRankSum=1.718;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5417,603,0 chrVII 1051288 . G A 4684.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.59;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4684,507,0 chrVII 1051973 . T C 2643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=119;Dels=0.00;FS=5.060;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.007;QD=22.21;ReadPosRankSum=3.338;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:4,114:119:99:2676,306,0 chrVII 1051991 . A G 2722 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.27;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2755,309,0 chrVII 1052045 . C T 3050 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.10;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3083,342,0 chrVII 1052379 . T C 3440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.165;QD=21.64;ReadPosRankSum=0.033;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3440,387,0 chrVII 1052548 . A G 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.653;QD=22.87;ReadPosRankSum=1.657;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3212,354,0 chrVII 1052940 . G A 3812.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.10;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3812,411,0 chrVII 1053627 . C T 5298.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.65;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5298,562,0 chrVII 1054383 . T C 2975 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.38;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3008,339,0 chrVII 1054411 . T C 3427.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.29;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3427,378,0 chrVII 1054745 . C T 4023.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,162:166:99:4023,432,0 chrVII 1055017 . C G 4488.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.13;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4488,507,0 chrVII 1055127 . A G 3910.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.59;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3910,435,0 chrVII 1055296 . G T 3748.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.57;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3748,399,0 chrVII 1057542 . G A 2117 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.52;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2150,234,0 chrVII 1057568 . T A 2005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=88;Dels=0.00;FS=3.058;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.778;QD=22.78;ReadPosRankSum=2.394;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:2,86:88:99:2038,222,0 chrVII 1057752 . C T 2867 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2900,321,0 chrVII 1057978 . A G 4480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=198;Dels=0.00;FS=4.046;HaplotypeScore=9.6376;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.120;QD=22.63;ReadPosRankSum=1.662;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4480,522,0 chrVII 1058059 . T C 4299.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4299,486,0 chrVII 1059071 . G T 3961.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.23;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3961,418,0 chrVII 1059129 . C T 3141 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.5204;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.60;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3174,351,0 chrVII 1059252 . T C 5280.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5280,603,0 chrVII 1059363 . G A 4470.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.8276;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4470,504,0 chrVII 1059977 . T G 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=147;Dels=0.00;FS=2.858;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.884;QD=22.97;ReadPosRankSum=2.399;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3376,375,0 chrVII 1060055 . C T 2937 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.76;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2970,321,0 chrVII 1060130 . A C 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.607;QD=20.81;ReadPosRankSum=1.710;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3237,360,0 chrVII 1060260 . C T 2776 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.75;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2809,300,0 chrVII 1060267 . A G 2657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=123;Dels=0.00;FS=7.217;HaplotypeScore=5.4537;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.234;QD=21.60;ReadPosRankSum=2.409;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:2,119:123:99:2690,303,0 chrVII 1061439 . G A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3880,409,0 chrVII 1061473 . A T 3410.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=16.6487;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3410,369,0 chrVII 1061571 . A G 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.012;QD=21.99;ReadPosRankSum=1.709;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3276,363,0 chrVII 1061830 . T C 5851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=246;Dels=0.00;FS=2.574;HaplotypeScore=17.6640;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.107;QD=23.78;ReadPosRankSum=2.938;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:3,241:246:99:5851,645,0 chrVII 1062031 . T C 6191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=294;Dels=0.00;FS=7.519;HaplotypeScore=16.7683;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.513;QD=21.06;ReadPosRankSum=2.433;SB=-3.056e+03 GT:AD:DP:GQ:PL 1/1:2,292:294:99:6191,714,0 chrVII 1062188 . C G 4185.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.8641;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.36;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:4185,477,0 chrVII 1062521 . A G 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=0.960;QD=21.75;ReadPosRankSum=1.673;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3807,426,0 chrVII 1062530 . A T 4088.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.59;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4088,432,0 chrVII 1062599 . A G 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.2146;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.495;QD=20.67;ReadPosRankSum=1.687;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3216,372,0 chrVII 1062869 . A G 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=3.367;HaplotypeScore=13.3214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.709;QD=21.95;ReadPosRankSum=1.709;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3359,390,0 chrVII 1063329 . T A 739 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:81:772,81,0 chrVII 1065116 . A C 2777 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.3992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2810,318,0 chrVII 1066097 . C T 5481.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.8914;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=25.03;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:5481,586,0 chrVII 1066670 . T C 3064 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.43;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3097,348,0 chrVII 1067117 . A T 175.19 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.442;DP=134;Dels=0.00;FS=2.424;HaplotypeScore=113.6923;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=1.726;QD=1.31;ReadPosRankSum=-5.450;SB=1.81 GT:AD:DP:GQ:PL 1/1:119,15:134:8:207,8,0 chrVII 1067342 . G A 3357.01 SnpCluster AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.72;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3357,372,0 chrVII 1067345 . A G 3389.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=-1.004;QD=21.59;ReadPosRankSum=1.710;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3389,375,0 chrVII 1067348 . T C 3305.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.406;QD=20.40;ReadPosRankSum=1.711;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3305,381,0 chrVII 1067981 . A G 2618.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.929;DP=417;Dels=0.00;FS=2.684;HaplotypeScore=17.9723;MLEAC=1;MLEAF=0.500;MQ=54.58;MQ0=0;MQRankSum=-6.833;QD=6.28;ReadPosRankSum=-2.558;SB=-1.132e+03 GT:AD:DP:GQ:PL 0/1:255,159:417:99:2648,0,5064 chrVII 1068001 . C A 1929.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.955;DP=407;Dels=0.00;FS=17.341;HaplotypeScore=15.7624;MLEAC=1;MLEAF=0.500;MQ=55.66;MQ0=0;MQRankSum=-6.429;QD=4.74;ReadPosRankSum=2.591;SB=-6.860e+02 GT:AD:DP:GQ:PL 0/1:274,130:407:99:1959,0,5483 chrVII 1068017 . A C 1363.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.605;DP=380;Dels=0.00;FS=29.985;HaplotypeScore=14.1850;MLEAC=1;MLEAF=0.500;MQ=55.86;MQ0=0;MQRankSum=-6.571;QD=3.59;ReadPosRankSum=3.765;SB=-4.620e+02 GT:AD:DP:GQ:PL 0/1:271,109:380:99:1393,0,5498 chrVII 1068118 . C A 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.013;DP=290;Dels=0.00;FS=33.603;HaplotypeScore=16.0200;MLEAC=1;MLEAF=0.500;MQ=57.57;MQ0=0;MQRankSum=-4.395;QD=0.27;ReadPosRankSum=-2.577;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:236,54:290:99:109,0,4656 chrVII 1068132 . C T 536.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.078;DP=347;Dels=0.00;FS=23.865;HaplotypeScore=24.7708;MLEAC=1;MLEAF=0.500;MQ=57.11;MQ0=0;MQRankSum=-5.139;QD=1.54;ReadPosRankSum=-1.957;SB=-1.640e+02 GT:AD:DP:GQ:PL 0/1:258,87:347:99:566,0,5038 chrVII 1068149 . G A 1188.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.107;DP=381;Dels=0.00;FS=9.118;HaplotypeScore=22.0283;MLEAC=1;MLEAF=0.500;MQ=56.67;MQ0=0;MQRankSum=-5.738;QD=3.12;ReadPosRankSum=0.040;SB=-6.270e+02 GT:AD:DP:GQ:PL 0/1:257,123:381:99:1218,0,4966 chrVII 1068282 . G A 186.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.887;DP=278;Dels=0.00;FS=94.432;HaplotypeScore=12.7671;MLEAC=1;MLEAF=0.500;MQ=55.69;MQ0=0;MQRankSum=-7.856;QD=0.67;ReadPosRankSum=0.317;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:217,61:278:99:216,0,4321 chrVII 1068283 . T C 114.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.289;DP=283;Dels=0.00;FS=104.423;HaplotypeScore=19.0765;MLEAC=1;MLEAF=0.500;MQ=55.42;MQ0=0;MQRankSum=-8.815;QD=0.40;ReadPosRankSum=1.174;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:222,58:283:99:144,0,4589 chrVII 1068287 . G A 86.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.090;DP=274;Dels=0.00;FS=130.237;HaplotypeScore=18.2879;MLEAC=1;MLEAF=0.500;MQ=55.45;MQ0=0;MQRankSum=-9.817;QD=0.31;ReadPosRankSum=1.364;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:218,56:274:99:116,0,4139 chrVII 1068290 . T C 100.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.283;DP=268;Dels=0.00;FS=126.247;HaplotypeScore=17.6822;MLEAC=1;MLEAF=0.500;MQ=55.27;MQ0=0;MQRankSum=-10.431;QD=0.37;ReadPosRankSum=2.340;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:214,52:268:99:130,0,4182 chrVII 1068292 . T C 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.766;DP=260;Dels=0.00;FS=117.567;HaplotypeScore=15.5654;MLEAC=1;MLEAF=0.500;MQ=55.21;MQ0=0;MQRankSum=-10.707;QD=0.09;ReadPosRankSum=3.326;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:210,48:260:54:54,0,4264 chrVII 1068293 . G A 60.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.501;DP=258;Dels=0.00;FS=92.997;HaplotypeScore=14.7767;MLEAC=1;MLEAF=0.500;MQ=55.09;MQ0=0;MQRankSum=-10.197;QD=0.23;ReadPosRankSum=2.549;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:206,51:258:90:90,0,3951 chrVII 1068298 . C T 70.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.653;DP=278;Dels=0.00;FS=162.873;HaplotypeScore=15.5542;MLEAC=1;MLEAF=0.500;MQ=52.73;MQ0=0;MQRankSum=-12.534;QD=0.25;ReadPosRankSum=-1.917;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:200,78:278:99:100,0,3719 chrVII 1068301 . C T 143.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.046;DP=280;Dels=0.00;FS=164.717;HaplotypeScore=19.4428;MLEAC=1;MLEAF=0.500;MQ=52.78;MQ0=0;MQRankSum=-12.614;QD=0.51;ReadPosRankSum=-1.029;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:201,78:280:99:173,0,3598 chrVII 1068302 . A T 175.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.039;DP=281;Dels=0.00;FS=161.277;HaplotypeScore=19.0503;MLEAC=1;MLEAF=0.500;MQ=52.70;MQ0=0;MQRankSum=-12.442;QD=0.62;ReadPosRankSum=-1.221;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:201,80:281:99:205,0,3822 chrVII 1068305 . A T 224.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.075;DP=286;Dels=0.00;FS=144.317;HaplotypeScore=19.0246;MLEAC=1;MLEAF=0.500;MQ=52.00;MQ0=0;MQRankSum=-12.796;QD=0.78;ReadPosRankSum=-2.608;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:195,91:286:99:254,0,3756 chrVII 1068308 . A G 279.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-9.242;DP=295;Dels=0.00;FS=109.357;HaplotypeScore=23.0227;MLEAC=1;MLEAF=0.500;MQ=51.83;MQ0=0;MQRankSum=-12.583;QD=0.95;ReadPosRankSum=-3.230;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:197,97:295:99:309,0,3628 chrVII 1068344 . G A 1277.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.305;DP=324;Dels=0.00;FS=23.726;HaplotypeScore=18.9951;MLEAC=1;MLEAF=0.500;MQ=50.43;MQ0=0;MQRankSum=-10.103;QD=3.94;ReadPosRankSum=0.941;SB=-8.290e+02 GT:AD:DP:GQ:PL 0/1:193,130:324:99:1307,0,3623 chrVII 1068401 . G A 2621.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.532;DP=404;Dels=0.00;FS=10.942;HaplotypeScore=24.4556;MLEAC=1;MLEAF=0.500;MQ=49.38;MQ0=0;MQRankSum=-2.219;QD=6.49;ReadPosRankSum=0.319;SB=-9.030e+02 GT:AD:DP:GQ:PL 0/1:223,178:404:99:2651,0,3437 chrVII 1068404 . G A 2548.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.814;DP=401;Dels=0.00;FS=9.154;HaplotypeScore=26.7669;MLEAC=1;MLEAF=0.500;MQ=48.85;MQ0=0;MQRankSum=-1.476;QD=6.35;ReadPosRankSum=0.780;SB=-8.770e+02 GT:AD:DP:GQ:PL 0/1:225,174:401:99:2578,0,3470 chrVII 1068508 . A G 3420.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.134;DP=402;Dels=0.00;FS=2.141;HaplotypeScore=11.7755;MLEAC=1;MLEAF=0.500;MQ=46.23;MQ0=0;MQRankSum=-2.320;QD=8.51;ReadPosRankSum=1.804;SB=-1.610e+03 GT:AD:DP:GQ:PL 0/1:195,207:402:99:3420,0,3745 chrVII 1068524 . T C 3308.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.910;DP=394;Dels=0.00;FS=4.472;HaplotypeScore=18.0849;MLEAC=1;MLEAF=0.500;MQ=47.61;MQ0=3;MQRankSum=-2.053;QD=8.40;ReadPosRankSum=1.489;SB=-1.707e+03 GT:AD:DP:GQ:PL 0/1:190,201:394:99:3308,0,3640 chrVII 1068608 . A G 3506.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=26.6467;MLEAC=2;MLEAF=1.00;MQ=33.51;MQ0=19;MQRankSum=-0.719;QD=13.33;ReadPosRankSum=2.429;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:2,261:263:99:3506,411,0 chrVII 1068621 . C T 984.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.934;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=16.8605;MLEAC=1;MLEAF=0.500;MQ=29.23;MQ0=13;MQRankSum=0.794;QD=4.00;ReadPosRankSum=0.138;SB=-3.950e+02 GT:AD:DP:GQ:PL 0/1:149,96:246:99:1014,0,1513 chrVII 1068650 . G C 2447 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.761;DP=211;Dels=0.00;FS=7.597;HaplotypeScore=7.4316;MLEAC=2;MLEAF=1.00;MQ=24.33;MQ0=0;MQRankSum=-0.946;QD=11.60;ReadPosRankSum=1.565;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:1,206:211:99:2480,314,0 chrVII 1068653 . A G 2397 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=22.75;MQ0=0;MQRankSum=-1.680;QD=11.93;ReadPosRankSum=1.715;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:1,200:201:99:2430,302,0 chrVII 1068656 . G A 2419 SnpCluster AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=23.58;MQ0=0;QD=12.16;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,196:199:99:2452,299,0 chrVII 1068659 . A G 2634 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=0;MQRankSum=-0.347;QD=12.31;ReadPosRankSum=2.920;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:3,211:214:99:2667,332,0 chrVII 1068695 . C T 6406.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=2;QD=19.71;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,324:325:99:6406,708,0 chrVII 1068728 . T C 2447.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.882;DP=423;Dels=0.00;FS=4.936;HaplotypeScore=9.6671;MLEAC=1;MLEAF=0.500;MQ=42.44;MQ0=12;MQRankSum=-7.252;QD=5.78;ReadPosRankSum=1.676;SB=-1.797e+03 GT:AD:DP:GQ:PL 0/1:220,203:423:99:2477,0,3920 chrVII 1068731 . A G 2384.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.671;DP=427;Dels=0.00;FS=5.546;HaplotypeScore=9.8573;MLEAC=1;MLEAF=0.500;MQ=42.69;MQ0=12;MQRankSum=-8.040;QD=5.58;ReadPosRankSum=1.039;SB=-1.734e+03 GT:AD:DP:GQ:PL 0/1:216,210:427:99:2414,0,3900 chrVII 1068806 . G A 1147.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.962;DP=239;Dels=0.00;FS=15.732;HaplotypeScore=17.8657;MLEAC=1;MLEAF=0.500;MQ=35.71;MQ0=17;MQRankSum=1.869;QD=4.80;ReadPosRankSum=-2.479;SB=-6.670e+02 GT:AD:DP:GQ:PL 0/1:147,92:239:99:1177,0,1399 chrVII 1068831 . G A 968 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.539;DP=126;Dels=0.00;FS=13.044;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=8;MQRankSum=-0.068;QD=7.68;ReadPosRankSum=-0.992;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:3,123:126:75:1001,75,0 chrVII 1068842 . T C 727 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.6808;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=5;QD=6.92;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:90:760,90,0 chrVII 1068848 . G A 445.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=89;Dels=0.00;FS=16.254;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=23.83;MQ0=1;MQRankSum=-1.265;QD=5.00;ReadPosRankSum=2.070;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:3,86:89:23:478,23,0 chrVII 1068856 . G A 389 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.33;MQ0=0;QD=5.12;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:48:422,48,0 chrVII 1068865 . C A 499 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.03;MQ0=0;QD=6.48;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:60:532,60,0 chrVII 1068869 . C A 472 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.578;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7093;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;MQRankSum=0.712;QD=5.69;ReadPosRankSum=3.491;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:6,77:83:60:505,60,0 chrVII 1068872 . T C 482 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.791;DP=94;Dels=0.03;FS=0.000;HaplotypeScore=5.7093;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;MQRankSum=0.069;QD=5.13;ReadPosRankSum=3.240;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:5,86:91:60:515,60,0 chrVII 1068878 . G A 1017 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.1597;MLEAC=2;MLEAF=1.00;MQ=35.02;MQ0=0;QD=8.77;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:1050,120,0 chrVII 1068934 . A C 1394.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.417;DP=280;Dels=0.00;FS=56.215;HaplotypeScore=6.2982;MLEAC=1;MLEAF=0.500;MQ=44.78;MQ0=0;MQRankSum=-0.094;QD=4.98;ReadPosRankSum=1.699;SB=-1.350e+02 GT:AD:DP:GQ:PL 0/1:175,103:280:99:1424,0,2957 chrVII 1068935 . C T 1452.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.841;DP=278;Dels=0.00;FS=56.215;HaplotypeScore=6.2982;MLEAC=1;MLEAF=0.500;MQ=44.88;MQ0=0;MQRankSum=-0.615;QD=5.22;ReadPosRankSum=1.605;SB=-1.670e+02 GT:AD:DP:GQ:PL 0/1:175,103:278:99:1482,0,2637 chrVII 1068994 . A G 285.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.344;DP=225;Dels=0.00;FS=75.892;HaplotypeScore=56.0751;MLEAC=1;MLEAF=0.500;MQ=43.66;MQ0=0;MQRankSum=-3.575;QD=1.27;ReadPosRankSum=-3.447;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:168,57:225:99:315,0,3042 chrVII 1069006 . A G 144.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.106;DP=188;Dels=0.00;FS=73.272;HaplotypeScore=43.0054;MLEAC=1;MLEAF=0.500;MQ=42.18;MQ0=0;MQRankSum=-6.064;QD=0.77;ReadPosRankSum=-5.967;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:148,39:188:99:174,0,2573 chrVII 1069176 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.52;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3400,372,0 chrVII 1069577 . C T 3913.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.0476;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.46;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3913,417,0 chrVII 1070756 . A G 3933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=3.404;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=0.991;QD=22.60;ReadPosRankSum=1.692;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3933,459,0 chrVII 1070793 . T C 4372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.378;DP=193;Dels=0.00;FS=8.801;HaplotypeScore=12.8036;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;MQRankSum=1.967;QD=22.65;ReadPosRankSum=3.369;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:4,189:193:99:4372,501,0 chrVII 1071007 . A T 2095 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=34.15;MQ0=0;QD=20.95;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2128,231,0 chrVII 1071015 . G A 2140 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=29.83;MQ0=0;QD=20.98;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2173,231,0 chrVII 1071018 . A G 1847 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=29.80;MQ0=0;MQRankSum=-2.426;QD=17.59;ReadPosRankSum=2.379;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:1880,216,0 chrVII 1071027 . C T 1405 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=16.34;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1438,156,0 chrVII 1071028 . A G 1337 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=15.55;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1370,156,0 chrVII 1071030 . A G 1331 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1364,156,0 chrVII 1071033 . T C 1358 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1391,156,0 chrVII 1071034 . C A 1424 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1457,156,0 chrVII 1071043 . G T 1392 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1425,147,0 chrVII 1071045 . G A 1340 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1373,147,0 chrVII 1071048 . G A 1364 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1397,150,0 chrVII 1071051 . C T 1292 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1325,138,0 chrVII 1071054 . G A 1171 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1204,132,0 chrVII 1071058 . G T 1142 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1175,123,0 chrVII 1071066 . A T 1058 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.443;QD=10.91;ReadPosRankSum=1.696;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1091,123,0 chrVII 1071072 . A C 975 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.530;QD=9.85;ReadPosRankSum=1.697;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1008,111,0 chrVII 1071080 . T C 855 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:888,99,0 chrVII 1071084 . A G 723 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.290;QD=7.69;ReadPosRankSum=1.695;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,93:94:84:756,84,0 chrVII 1071086 . T C 733 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:84:766,84,0 chrVII 1071090 . A C 592 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.43;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:72:625,72,0 chrVII 1071093 . T C 587 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.75;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:72:620,72,0 chrVII 1071096 . T C 611 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.02;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:72:644,72,0 chrVII 1071101 . A G 427 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.689;QD=5.27;ReadPosRankSum=2.389;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:2,79:81:51:460,51,0 chrVII 1071102 . G A 444 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.62;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:51:477,51,0 chrVII 1071109 . A C 518 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.555;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.56;MQ0=0;MQRankSum=0.410;QD=6.17;ReadPosRankSum=2.917;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:3,81:84:60:551,60,0 chrVII 1071114 . C T 539 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.64;MQ0=0;QD=7.38;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:63:572,63,0 chrVII 1071120 . C T 643 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.54;MQ0=0;QD=9.19;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:69:676,69,0 chrVII 1071174 . A G 304 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=11.26;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:39:337,39,0 chrVII 1071177 . C A 333 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=13.87;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:39:366,39,0 chrVII 1071178 . G A 326 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=13.58;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:39:359,39,0 chrVII 1071187 . A T 337 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=14.65;SB=-7.610e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:39:370,39,0 chrVII 1071189 . A T 314 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;MQRankSum=-1.281;QD=13.65;ReadPosRankSum=1.583;SB=-7.610e-03 GT:AD:DP:GQ:PL 1/1:1,22:23:39:347,39,0 chrVII 1071190 . G A 337 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=15.32;SB=-7.610e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:39:370,39,0 chrVII 1071202 . A G 158.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=10.54;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:191,21,0 chrVII 1071203 . C A 155.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=10.34;SB=-7.388e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:188,21,0 chrVII 1071210 . G T 108.26 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.83;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:15:141,15,0 chrVII 1071213 . A C 106.26 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.81;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:139,15,0 chrVII 1071219 . A G 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.28;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:83,9,0 chrVII 1071222 . G A 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.50;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:83,9,0 chrVII 1072857 . C T 2757 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2790,300,0 chrVII 1073467 . G A 2742 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2775,300,0 chrVII 1074260 . C A 4715.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.6672;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.58;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,196:200:99:4715,507,0 chrVII 1074478 . A G 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.1638;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.678;QD=20.94;ReadPosRankSum=1.678;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4062,462,0 chrVII 1074912 . G C 2863 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.05;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2896,333,0 chrVII 1075157 . T C 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=170;Dels=0.00;FS=9.831;HaplotypeScore=8.2922;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=0.601;QD=20.11;ReadPosRankSum=2.899;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:3418,387,0 chrVII 1075171 . T C 3029 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=18.70;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3062,339,0 chrVII 1075180 . C T 2844 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=18.47;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2877,318,0 chrVII 1075197 . C T 3043 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.4983;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.90;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3076,330,0 chrVII 1075325 . G A 4534.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.9487;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.56;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4534,481,0 chrVII 1075526 . C T 4253.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=19.0670;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.05;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4253,465,0 chrVII 1075820 . C A 1789 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=7.2435;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.05;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1822,195,0 chrVII 1075834 . G T 1801 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.70;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1834,195,0 chrVII 1076208 . G T 60.51 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.41;MQ0=10;QD=2.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:12:93,12,0 chrVII 1076209 . A C 112.13 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.42;MQ0=10;QD=3.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,29:34:18:145,18,0 chrVII 1076432 . A G 3795.01 filter AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=25.02;MQ0=36;QD=15.00;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,251:253:99:3795,426,0 chrVII 1076847 . T C 8818.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=481;Dels=0.00;FS=2.861;HaplotypeScore=15.9218;MLEAC=2;MLEAF=1.00;MQ=34.67;MQ0=59;MQRankSum=-1.115;QD=18.33;ReadPosRankSum=2.414;SB=-3.885e+03 GT:AD:DP:GQ:PL 1/1:2,477:481:99:8818,1011,0 chrVII 1077213 . C T 422.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.731;DP=315;Dels=0.00;FS=3.266;HaplotypeScore=17.4445;MLEAC=1;MLEAF=0.500;MQ=14.41;MQ0=129;MQRankSum=0.215;QD=1.34;ReadPosRankSum=-1.123;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:185,130:315:99:452,0,975 chrVII 1077282 . C T 512.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.121;DP=335;Dels=0.00;FS=0.582;HaplotypeScore=30.5267;MLEAC=1;MLEAF=0.500;MQ=15.75;MQ0=97;MQRankSum=-1.562;QD=1.53;ReadPosRankSum=-1.554;SB=-2.390e+02 GT:AD:DP:GQ:PL 0/1:205,129:335:99:542,0,1347 chrVII 1077997 . C T 1966 filter AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=14.94;MQ0=94;QD=7.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:1999,225,0 chrVII 1078252 . G A 4904.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.371;DP=360;Dels=0.00;FS=69.505;HaplotypeScore=46.1859;MLEAC=1;MLEAF=0.500;MQ=34.54;MQ0=37;MQRankSum=1.843;QD=13.62;ReadPosRankSum=1.093;SB=-2.554e+03 GT:AD:DP:GQ:PL 0/1:60,296:360:99:4904,0,320 chrVII 1078467 . G A 1294.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.415;DP=451;Dels=0.00;FS=3.746;HaplotypeScore=25.7753;MLEAC=1;MLEAF=0.500;MQ=50.10;MQ0=0;MQRankSum=-2.198;QD=2.87;ReadPosRankSum=-0.185;SB=-6.260e+02 GT:AD:DP:GQ:PL 0/1:348,103:451:99:1324,0,7302 chrVII 1078492 . G C 1137.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.058;DP=460;Dels=0.00;FS=2.471;HaplotypeScore=29.0216;MLEAC=1;MLEAF=0.500;MQ=47.94;MQ0=1;MQRankSum=-3.460;QD=2.47;ReadPosRankSum=-1.559;SB=-5.970e+02 GT:AD:DP:GQ:PL 0/1:354,101:460:99:1167,0,7315 chrVII 1078750 . T C 419.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.943;DP=596;Dels=0.00;FS=37.169;HaplotypeScore=34.0018;MLEAC=1;MLEAF=0.500;MQ=50.26;MQ0=23;MQRankSum=-13.538;QD=0.70;ReadPosRankSum=0.345;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:475,118:596:99:449,0,10807 chrVII 1078833 . G A 1378.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.880;DP=584;Dels=0.00;FS=5.128;HaplotypeScore=29.5469;MLEAC=1;MLEAF=0.500;MQ=53.17;MQ0=7;MQRankSum=-7.050;QD=2.36;ReadPosRankSum=1.510;SB=-3.360e+02 GT:AD:DP:GQ:PL 0/1:443,137:584:99:1408,0,8179 chrVII 1078862 . C T 763.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.569;DP=505;Dels=0.00;FS=2.558;HaplotypeScore=23.1779;MLEAC=1;MLEAF=0.500;MQ=48.39;MQ0=10;MQRankSum=-8.866;QD=1.51;ReadPosRankSum=1.017;SB=-1.490e+02 GT:AD:DP:GQ:PL 0/1:402,102:505:99:793,0,7087 chrVII 1079097 . T C 12239.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.119;DP=625;Dels=0.00;FS=14.155;HaplotypeScore=14.1396;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=5;MQRankSum=0.516;QD=19.58;ReadPosRankSum=4.181;SB=-5.649e+03 GT:AD:DP:GQ:PL 1/1:6,617:625:99:12239,1359,0 chrVII 1079104 . C A 10993.01 filter AC=2;AF=1.00;AN=2;DP=618;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=5;QD=17.79;SB=-5.196e+03 GT:AD:DP:GQ:PL 1/1:0,611:618:99:10993,1239,0 chrVII 1079115 . T C 10514.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.967;DP=575;Dels=0.00;FS=5.538;HaplotypeScore=10.9357;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=5;MQRankSum=-0.903;QD=18.29;ReadPosRankSum=2.924;SB=-4.500e+03 GT:AD:DP:GQ:PL 1/1:3,572:575:99:10514,1211,0 chrVII 1079145 . C T 8933.01 filter AC=2;AF=1.00;AN=2;DP=477;Dels=0.00;FS=0.000;HaplotypeScore=14.5206;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=18.73;SB=-5.303e+03 GT:AD:DP:GQ:PL 1/1:0,475:477:99:8933,978,0 chrVII 1079171 . A T 7415.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.743;DP=436;Dels=0.00;FS=11.876;HaplotypeScore=4.6674;MLEAC=2;MLEAF=1.00;MQ=38.09;MQ0=2;MQRankSum=-1.510;QD=17.01;ReadPosRankSum=3.570;SB=-3.852e+03 GT:AD:DP:GQ:PL 1/1:5,431:436:99:7415,822,0 chrVII 1079183 . T C 8393.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.412;DP=455;Dels=0.00;FS=14.150;HaplotypeScore=15.6787;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=2;MQRankSum=-1.863;QD=18.45;ReadPosRankSum=3.397;SB=-3.647e+03 GT:AD:DP:GQ:PL 1/1:4,451:455:99:8393,927,0 chrVII 1079216 . T C 6115.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.224;DP=529;Dels=0.00;FS=12.069;HaplotypeScore=16.6923;MLEAC=1;MLEAF=0.500;MQ=43.46;MQ0=2;MQRankSum=-0.305;QD=11.56;ReadPosRankSum=1.175;SB=-2.992e+03 GT:AD:DP:GQ:PL 0/1:112,415:529:99:6115,0,967 chrVII 1079230 . A T 9604.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=543;Dels=0.00;FS=5.182;HaplotypeScore=10.7799;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=16;MQRankSum=-1.251;QD=17.69;ReadPosRankSum=3.346;SB=-4.106e+03 GT:AD:DP:GQ:PL 1/1:4,538:543:99:9604,1042,0 chrVII 1079233 . A T 9396.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=549;Dels=0.00;FS=5.481;HaplotypeScore=7.5213;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=16;MQRankSum=0.162;QD=17.11;ReadPosRankSum=2.927;SB=-4.163e+03 GT:AD:DP:GQ:PL 1/1:4,545:549:99:9396,1047,0 chrVII 1079342 . A G 1726.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.214;DP=530;Dels=0.00;FS=35.121;HaplotypeScore=16.0941;MLEAC=1;MLEAF=0.500;MQ=40.20;MQ0=21;MQRankSum=4.272;QD=3.26;ReadPosRankSum=-0.053;SB=-5.970e+02 GT:AD:DP:GQ:PL 0/1:392,137:530:99:1756,0,5780 chrVII 1079344 . A G,T 7772.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=4.102;DP=515;Dels=0.00;FS=24.502;HaplotypeScore=7.7676;MLEAC=1,1;MLEAF=0.500,0.500;MQ=39.88;MQ0=21;MQRankSum=-2.019;QD=15.09;ReadPosRankSum=4.188;SB=-4.509e+03 GT:AD:DP:GQ:PL 1/2:6,372,137:515:99:7772,2550,1870,5221,0,4909 chrVII 1079375 . A C 1257.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.457;DP=408;Dels=0.00;FS=168.462;HaplotypeScore=39.8075;MLEAC=1;MLEAF=0.500;MQ=34.27;MQ0=29;MQRankSum=2.115;QD=3.08;ReadPosRankSum=6.144;SB=-1.420e+02 GT:AD:DP:GQ:PL 0/1:303,105:408:99:1287,0,3877 chrVII 1079419 . A G 1085.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.119;DP=371;Dels=0.00;FS=123.473;HaplotypeScore=21.4685;MLEAC=1;MLEAF=0.500;MQ=38.89;MQ0=32;MQRankSum=-1.390;QD=2.92;ReadPosRankSum=-2.946;SB=-1.290e+02 GT:AD:DP:GQ:PL 0/1:274,93:371:99:1115,0,4071 chrVII 1079445 . G C 893.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.501;DP=431;Dels=0.00;FS=85.166;HaplotypeScore=35.5326;MLEAC=1;MLEAF=0.500;MQ=44.20;MQ0=30;MQRankSum=-2.515;QD=2.07;ReadPosRankSum=0.428;SB=-1.580e+02 GT:AD:DP:GQ:PL 0/1:330,98:430:99:923,0,5203 chrVII 1079459 . T C 710.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.176;DP=412;Dels=0.00;FS=56.145;HaplotypeScore=23.9741;MLEAC=1;MLEAF=0.500;MQ=46.33;MQ0=21;MQRankSum=-2.152;QD=1.72;ReadPosRankSum=1.075;SB=-1.970e+02 GT:AD:DP:GQ:PL 0/1:310,97:412:99:740,0,5229 chrVII 1079466 . T G 737.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.808;DP=415;Dels=0.00;FS=48.893;HaplotypeScore=25.4967;MLEAC=1;MLEAF=0.500;MQ=46.83;MQ0=21;MQRankSum=-1.868;QD=1.78;ReadPosRankSum=0.172;SB=-3.070e+02 GT:AD:DP:GQ:PL 0/1:309,104:415:99:767,0,5317 chrVII 1079473 . C G 5175.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;DP=428;Dels=0.00;FS=31.147;HaplotypeScore=24.8306;MLEAC=1;MLEAF=0.500;MQ=46.86;MQ0=19;MQRankSum=-0.014;QD=12.09;ReadPosRankSum=1.222;SB=-2.214e+03 GT:AD:DP:GQ:PL 0/1:116,310:428:99:5175,0,1065 chrVII 1079517 . G A 2211.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.572;DP=497;Dels=0.00;FS=21.399;HaplotypeScore=28.5617;MLEAC=1;MLEAF=0.500;MQ=45.23;MQ0=21;MQRankSum=6.582;QD=4.45;ReadPosRankSum=-1.451;SB=-1.474e+03 GT:AD:DP:GQ:PL 0/1:338,158:497:99:2241,0,4132 chrVII 1079528 . C T 3164.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.316;DP=470;Dels=0.00;FS=13.335;HaplotypeScore=21.5424;MLEAC=1;MLEAF=0.500;MQ=43.86;MQ0=20;MQRankSum=-6.036;QD=6.73;ReadPosRankSum=1.691;SB=-1.746e+03 GT:AD:DP:GQ:PL 0/1:161,308:470:99:3194,0,2454 chrVII 1079556 . A G 1773.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.250;DP=421;Dels=0.00;FS=0.778;HaplotypeScore=19.8315;MLEAC=1;MLEAF=0.500;MQ=41.70;MQ0=32;MQRankSum=-10.427;QD=4.21;ReadPosRankSum=-1.631;SB=-9.750e+02 GT:AD:DP:GQ:PL 0/1:180,238:421:99:1803,0,3535 chrVII 1079563 . T C 1449.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.075;DP=392;Dels=0.00;FS=5.503;HaplotypeScore=11.7755;MLEAC=1;MLEAF=0.500;MQ=40.99;MQ0=37;MQRankSum=-10.208;QD=3.70;ReadPosRankSum=-3.858;SB=-7.540e+02 GT:AD:DP:GQ:PL 0/1:174,218:392:99:1479,0,3444 chrVII 1079615 . A G 547.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.085;DP=295;Dels=0.00;FS=3.382;HaplotypeScore=13.6217;MLEAC=1;MLEAF=0.500;MQ=38.31;MQ0=84;MQRankSum=-10.313;QD=1.85;ReadPosRankSum=-0.739;SB=-2.620e+02 GT:AD:DP:GQ:PL 0/1:147,148:295:99:577,0,2746 chrVII 1079617 . C T 633.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.895;DP=305;Dels=0.00;FS=3.974;HaplotypeScore=14.4104;MLEAC=1;MLEAF=0.500;MQ=38.50;MQ0=83;MQRankSum=-9.957;QD=2.08;ReadPosRankSum=-2.802;SB=-2.810e+02 GT:AD:DP:GQ:PL 0/1:140,163:305:99:663,0,2744 chrVII 1079643 . C G 1902.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;DP=379;Dels=0.00;FS=11.008;HaplotypeScore=8.1037;MLEAC=1;MLEAF=0.500;MQ=42.17;MQ0=83;MQRankSum=-5.063;QD=5.02;ReadPosRankSum=-2.302;SB=-1.384e+03 GT:AD:DP:GQ:PL 0/1:138,240:379:99:1932,0,2591 chrVII 1079656 . T G 2283.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.120;DP=397;Dels=0.00;FS=7.505;HaplotypeScore=15.2019;MLEAC=1;MLEAF=0.500;MQ=43.60;MQ0=77;MQRankSum=-4.237;QD=5.75;ReadPosRankSum=-0.830;SB=-1.611e+03 GT:AD:DP:GQ:PL 0/1:140,257:397:99:2313,0,2730 chrVII 1079711 . T A 2423.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;DP=446;Dels=0.00;FS=24.792;HaplotypeScore=52.1346;MLEAC=1;MLEAF=0.500;MQ=49.13;MQ0=3;MQRankSum=5.123;QD=5.43;ReadPosRankSum=0.453;SB=-1.239e+03 GT:AD:DP:GQ:PL 0/1:290,156:446:99:2453,0,4460 chrVII 1079763 . T A 5071.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.107;DP=447;Dels=0.00;FS=31.214;HaplotypeScore=25.2611;MLEAC=1;MLEAF=0.500;MQ=48.69;MQ0=8;MQRankSum=-5.206;QD=11.34;ReadPosRankSum=0.594;SB=-1.090e+03 GT:AD:DP:GQ:PL 0/1:150,297:447:99:5071,0,2478 chrVII 1079861 . A G 8087.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.411;DP=629;Dels=0.00;FS=83.241;HaplotypeScore=32.6816;MLEAC=1;MLEAF=0.500;MQ=47.28;MQ0=73;MQRankSum=-3.325;QD=12.86;ReadPosRankSum=-0.168;SB=-1.778e+03 GT:AD:DP:GQ:PL 0/1:173,455:629:99:8087,0,2653 chrVII 1079904 . A G 5640.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.136;DP=503;Dels=0.00;FS=30.773;HaplotypeScore=30.1905;MLEAC=1;MLEAF=0.500;MQ=42.87;MQ0=66;MQRankSum=-4.916;QD=11.21;ReadPosRankSum=2.765;SB=-1.976e+03 GT:AD:DP:GQ:PL 0/1:146,355:503:99:5640,0,1969 chrVII 1080123 . C A 3483.01 filter AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=18.2451;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=26;QD=17.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:3483,369,0 chrVII 1080128 . T C 141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=1;MLEAF=0.500;MQ=25.86;MQ0=40;MQRankSum=1.269;QD=0.71;ReadPosRankSum=0.181;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:150,46:198:99:171,0,2280 chrVII 1080277 . C T 5439.01 filter AC=2;AF=1.00;AN=2;DP=420;Dels=0.00;FS=0.000;HaplotypeScore=17.6453;MLEAC=2;MLEAF=1.00;MQ=23.78;MQ0=70;QD=12.95;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,416:420:99:5439,615,0 chrVII 1080548 . T C 570 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=15.15;MQ0=112;MQRankSum=-1.493;QD=3.29;ReadPosRankSum=1.673;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:35,135:173:69:603,69,0 chrVII 1080626 . C T 268 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.071;DP=193;Dels=0.00;FS=4.755;HaplotypeScore=4.1607;MLEAC=2;MLEAF=1.00;MQ=10.52;MQ0=119;MQRankSum=4.193;QD=1.39;ReadPosRankSum=-4.156;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:106,85:193:33:301,33,0 chrVII 1080673 . A T 165.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.534;DP=86;Dels=0.00;FS=6.163;HaplotypeScore=66.6708;MLEAC=2;MLEAF=1.00;MQ=15.90;MQ0=30;MQRankSum=5.853;QD=1.92;ReadPosRankSum=-0.184;SB=-9.804e+01 GT:AD:DP:GQ:PL 1/1:46,29:86:24:198,24,0 chrVII 1080674 . A G 160.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.022;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=66.6708;MLEAC=2;MLEAF=1.00;MQ=16.18;MQ0=27;MQRankSum=2.362;QD=1.93;ReadPosRankSum=2.185;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:18,65:83:24:193,24,0 chrVII 1080676 . C T 187.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=33.2161;MLEAC=2;MLEAF=1.00;MQ=18.29;MQ0=21;MQRankSum=1.672;QD=2.40;ReadPosRankSum=1.368;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:11,67:78:27:220,27,0 chrVII 1080688 . C T 405 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=24.46;MQ0=17;QD=3.72;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:54:438,54,0 chrVII 1080758 . C G 378.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=188;Dels=0.00;FS=56.276;HaplotypeScore=15.2859;MLEAC=1;MLEAF=0.500;MQ=37.02;MQ0=3;MQRankSum=2.109;QD=2.01;ReadPosRankSum=1.159;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,52:188:99:408,0,2141 chrVII 1080854 . T C 492.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.959;DP=219;Dels=0.00;FS=5.379;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=32.06;MQ0=73;MQRankSum=1.238;QD=2.25;ReadPosRankSum=-1.119;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:164,54:219:99:522,0,2319 chrVII 1080931 . A C 8177.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=397;Dels=0.00;FS=9.200;HaplotypeScore=12.5934;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=19;MQRankSum=0.331;QD=20.60;ReadPosRankSum=2.430;SB=-3.218e+03 GT:AD:DP:GQ:PL 1/1:2,391:397:99:8177,912,0 chrVII 1080936 . T C 4498.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.808;DP=407;Dels=0.00;FS=22.832;HaplotypeScore=17.1477;MLEAC=1;MLEAF=0.500;MQ=42.35;MQ0=21;MQRankSum=-2.146;QD=11.05;ReadPosRankSum=2.797;SB=-1.784e+03 GT:AD:DP:GQ:PL 0/1:120,286:406:99:4498,0,1964 chrVII 1081034 . C T 735.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.004;DP=353;Dels=0.00;FS=9.030;HaplotypeScore=483.3808;MLEAC=1;MLEAF=0.500;MQ=40.91;MQ0=39;MQRankSum=-3.558;QD=2.08;ReadPosRankSum=-1.787;SB=-2.420e+02 GT:AD:DP:GQ:PL 0/1:262,87:353:99:765,0,3816 chrVII 1081252 . C G 6017.01 filter AC=2;AF=1.00;AN=2;DP=432;Dels=0.00;FS=0.000;HaplotypeScore=16.5244;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=42;QD=13.93;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:0,427:432:99:6017,713,0 chrVII 1081262 . T C 5882.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.168;DP=444;Dels=0.00;FS=14.498;HaplotypeScore=10.1816;MLEAC=2;MLEAF=1.00;MQ=31.17;MQ0=62;MQRankSum=0.171;QD=13.25;ReadPosRankSum=4.055;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:6,431:444:99:5882,692,0 chrVII 1081363 . G A 3403.01 filter AC=2;AF=1.00;AN=2;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=19.38;MQ0=78;QD=9.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,345:345:99:3403,404,0 chrVII 1081397 . T C 2287 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=3.4293;MLEAC=2;MLEAF=1.00;MQ=18.05;MQ0=2;QD=9.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:2320,290,0 chrVII 1081404 . A T 2065 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.972;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=17.73;MQ0=7;MQRankSum=-2.611;QD=8.04;ReadPosRankSum=2.972;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,254:257:99:2098,257,0 chrVII 1081407 . G A 1772 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.36;MQ0=6;MQRankSum=-0.157;QD=7.15;ReadPosRankSum=-1.732;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:1805,221,0 chrVII 1081432 . C T 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.957;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=14.00;MQ0=16;MQRankSum=-1.928;QD=0.26;ReadPosRankSum=-0.908;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:179,55:234:90:90,0,598 chrVII 1081448 . G A 673 filter AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.73;MQ0=21;QD=3.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,197:197:81:706,81,0 chrVII 1081450 . G A 691 filter AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.84;MQ0=21;QD=3.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,198:198:84:724,84,0 chrVII 1081493 . A G 649.34 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.69;MQ0=183;MQRankSum=3.747;QD=2.09;ReadPosRankSum=2.971;SB=-3.334e+00 GT:AD:DP:GQ:PL 0/1:131,176:310:8:679,0,8 chrVII 1081530 . T A 216.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.615;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.48;MQ0=202;MQRankSum=5.024;QD=0.87;ReadPosRankSum=-3.927;SB=-6.411e-03 GT:AD:DP:GQ:PL 0/1:143,106:249:67:246,0,67 chrVII 1082268 . T C 16102.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=777;Dels=0.00;FS=9.450;HaplotypeScore=23.6950;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=48;MQRankSum=0.363;QD=20.72;ReadPosRankSum=2.748;SB=-8.268e+03 GT:AD:DP:GQ:PL 1/1:3,774:777:99:16102,1847,0 chrVII 1082592 . G A 14968.01 filter AC=2;AF=1.00;AN=2;DP=820;DS;Dels=0.00;FS=0.000;HaplotypeScore=74.1851;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=18.25;SB=-6.381e+03 GT:AD:DP:GQ:PL 1/1:0,816:820:99:14968,1618,0 chrVII 1082753 . G A 464.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.802;DP=443;Dels=0.00;FS=454.158;HaplotypeScore=21.4309;MLEAC=1;MLEAF=0.500;MQ=35.48;MQ0=0;MQRankSum=-6.132;QD=1.05;ReadPosRankSum=-0.670;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:151,290:443:99:494,0,2180 chrVII 1082775 . A G 4947.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.147;DP=434;Dels=0.00;FS=6.542;HaplotypeScore=20.9230;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;MQRankSum=0.983;QD=11.40;ReadPosRankSum=5.334;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:10,422:434:99:4947,558,0 chrVII 1082819 . T C 758.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.949;DP=474;Dels=0.00;FS=130.375;HaplotypeScore=20.9277;MLEAC=1;MLEAF=0.500;MQ=38.08;MQ0=3;MQRankSum=-3.014;QD=1.60;ReadPosRankSum=1.596;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:392,76:474:99:788,0,5568 chrVII 1082835 . C G 571.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;DP=464;Dels=0.00;FS=30.569;HaplotypeScore=35.6252;MLEAC=1;MLEAF=0.500;MQ=35.83;MQ0=5;MQRankSum=0.268;QD=1.23;ReadPosRankSum=-0.808;SB=-2.680e+02 GT:AD:DP:GQ:PL 0/1:392,69:464:99:601,0,4985 chrVII 1082836 . A G 603.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.869;DP=467;Dels=0.00;FS=30.153;HaplotypeScore=36.5986;MLEAC=1;MLEAF=0.500;MQ=35.61;MQ0=5;MQRankSum=-0.100;QD=1.29;ReadPosRankSum=-1.100;SB=-2.740e+02 GT:AD:DP:GQ:PL 0/1:393,72:467:99:633,0,5199 chrVII 1082858 . G T 3203.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.534;DP=454;Dels=0.00;FS=83.231;HaplotypeScore=19.9094;MLEAC=1;MLEAF=0.500;MQ=30.74;MQ0=5;MQRankSum=-4.727;QD=7.06;ReadPosRankSum=2.357;SB=-6.750e+02 GT:AD:DP:GQ:PL 0/1:108,338:454:99:3233,0,1574 chrVII 1082861 . T C 2966.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.609;DP=440;Dels=0.00;FS=86.608;HaplotypeScore=10.4452;MLEAC=1;MLEAF=0.500;MQ=29.20;MQ0=5;MQRankSum=-5.954;QD=6.74;ReadPosRankSum=1.999;SB=-6.290e+02 GT:AD:DP:GQ:PL 0/1:113,324:440:99:2996,0,1728 chrVII 1082883 . A G 1813.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.715;DP=340;Dels=0.00;FS=123.352;HaplotypeScore=10.9019;MLEAC=1;MLEAF=0.500;MQ=26.58;MQ0=4;MQRankSum=-10.148;QD=5.33;ReadPosRankSum=-2.413;SB=-1.340e+02 GT:AD:DP:GQ:PL 0/1:132,206:340:99:1843,0,2351 chrVII 1082897 . C A 1257.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.196;DP=282;Dels=0.00;FS=217.013;HaplotypeScore=78.3453;MLEAC=1;MLEAF=0.500;MQ=27.67;MQ0=2;MQRankSum=-7.144;QD=4.46;ReadPosRankSum=-5.613;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,152:282:99:1287,0,2315 chrVII 1082905 . T C 331.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.162;DP=224;Dels=0.00;FS=172.220;HaplotypeScore=84.2007;MLEAC=1;MLEAF=0.500;MQ=29.14;MQ0=2;MQRankSum=-4.160;QD=1.48;ReadPosRankSum=-3.039;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,94:224:99:361,0,2427 chrVII 1082966 . G A 429.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.040;DP=108;Dels=0.00;FS=110.732;HaplotypeScore=37.5397;MLEAC=1;MLEAF=0.500;MQ=31.79;MQ0=0;MQRankSum=0.189;QD=3.97;ReadPosRankSum=-4.349;SB=-1.602e+01 GT:AD:DP:GQ:PL 0/1:74,34:108:99:459,0,827 chrVII 1082972 . G A 1470 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=44.0877;MLEAC=2;MLEAF=1.00;MQ=30.32;MQ0=0;QD=15.81;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1503,165,0 chrVII 1082981 . T C 1237 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=25.1798;MLEAC=2;MLEAF=1.00;MQ=26.57;MQ0=0;QD=14.90;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1270,147,0 chrVII 1082996 . G A 756.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.648;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=29.3937;MLEAC=1;MLEAF=0.500;MQ=27.48;MQ0=0;MQRankSum=1.928;QD=10.80;ReadPosRankSum=-0.155;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,52:70:99:786,0,175 chrVII 1083002 . G A 92.26 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=17.6903;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=0;QD=1.59;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,58:58:15:125,15,0 chrVII 1083004 . G C 967 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=17.6903;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=0;QD=16.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1000,114,0 chrVII 1083007 . A G 958 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.8857;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;QD=15.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:991,114,0 chrVII 1083020 . T G 690.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.654;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=18.4974;MLEAC=1;MLEAF=0.500;MQ=26.90;MQ0=0;MQRankSum=4.413;QD=7.84;ReadPosRankSum=5.059;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,55:88:99:720,0,156 chrVII 1083027 . T C 530.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.251;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.5879;MLEAC=1;MLEAF=0.500;MQ=27.01;MQ0=0;MQRankSum=3.028;QD=6.16;ReadPosRankSum=4.048;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,42:86:99:560,0,277 chrVII 1083037 . G A 340.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.180;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.9673;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=0;MQRankSum=-1.480;QD=4.05;ReadPosRankSum=-0.592;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,45:84:99:370,0,453 chrVII 1083143 . T A 43.97 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=12;QD=0.83;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:9:76,9,0 chrVII 1083148 . T C 38.97 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=12;QD=0.78;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:9:71,9,0 chrVII 1083172 . A G 41.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.736;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=12;MQRankSum=1.504;QD=1.55;ReadPosRankSum=-1.736;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:13,14:27:9:74,9,0 chrVII 1083181 . C T 43.97 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=12;QD=1.63;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:9:76,9,0 chrVII 1083187 . C T 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.240;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.74;MQ0=12;MQRankSum=1.488;QD=1.77;ReadPosRankSum=-1.736;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:13,13:26:9:78,9,0 chrVII 1083193 . G A 44.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.158;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.39;MQ0=12;MQRankSum=1.423;QD=1.96;ReadPosRankSum=-1.739;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:13,10:23:9:77,9,0 chrVII 1083271 . C T 85.51 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.04;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=1.78;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,46:46:12:118,12,0 chrVII 1083272 . C T 82.51 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.04;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=1.68;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,47:47:12:115,12,0 chrVII 1083273 . C A 78.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.029;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=0;MQRankSum=3.627;QD=1.48;ReadPosRankSum=3.564;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:5,46:53:12:111,12,0 chrVII 1083282 . T C 50.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.801;DP=65;Dels=0.00;FS=16.540;HaplotypeScore=8.2425;MLEAC=1;MLEAF=0.500;MQ=25.98;MQ0=0;MQRankSum=5.272;QD=0.77;ReadPosRankSum=5.892;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,46:65:80:80,0,93 chrVII 1083299 . G A 286 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.7872;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=0;QD=4.40;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:36:319,36,0 chrVII 1083300 . C T 50.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.839;DP=65;Dels=0.00;FS=33.110;HaplotypeScore=7.7872;MLEAC=1;MLEAF=0.500;MQ=25.73;MQ0=0;MQRankSum=4.119;QD=0.77;ReadPosRankSum=2.609;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,42:65:80:80,0,119 chrVII 1083301 . G T 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.560;DP=65;Dels=0.00;FS=29.129;HaplotypeScore=7.7872;MLEAC=1;MLEAF=0.500;MQ=25.73;MQ0=0;MQRankSum=4.795;QD=0.75;ReadPosRankSum=1.296;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:23,42:65:79:79,0,168 chrVII 1083308 . A G 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;DP=71;Dels=0.00;FS=30.733;HaplotypeScore=16.2040;MLEAC=1;MLEAF=0.500;MQ=24.78;MQ0=4;MQRankSum=4.836;QD=0.63;ReadPosRankSum=-2.264;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:31,40:71:75:75,0,165 chrVII 1083316 . A C 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;DP=91;Dels=0.00;FS=26.696;HaplotypeScore=17.9271;MLEAC=1;MLEAF=0.500;MQ=21.53;MQ0=14;MQRankSum=5.222;QD=0.58;ReadPosRankSum=-2.594;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:29,35:91:83:83,0,136 chrVII 1083335 . A C 183.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617;DP=84;Dels=0.00;FS=18.467;HaplotypeScore=18.1505;MLEAC=1;MLEAF=0.500;MQ=19.00;MQ0=18;MQRankSum=1.999;QD=2.18;ReadPosRankSum=1.801;SB=-1.590e+02 GT:AD:DP:GQ:PL 0/1:47,37:84:80:213,0,80 chrVII 1083364 . T C 85.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.153;DP=83;Dels=0.00;FS=14.445;HaplotypeScore=6.0448;MLEAC=1;MLEAF=0.500;MQ=15.73;MQ0=18;MQRankSum=-1.466;QD=1.02;ReadPosRankSum=-1.694;SB=-1.049e+02 GT:AD:DP:GQ:PL 0/1:43,40:83:99:115,0,134 chrVII 1083398 . A T 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=27.2228;MLEAC=1;MLEAF=0.500;MQ=18.81;MQ0=17;MQRankSum=-0.062;QD=0.61;ReadPosRankSum=2.271;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,26:84:81:81,0,126 chrVII 1083404 . T G 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.293;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=20.4453;MLEAC=1;MLEAF=0.500;MQ=20.52;MQ0=8;MQRankSum=0.178;QD=0.61;ReadPosRankSum=-2.714;SB=-6.465e-03 GT:AD:DP:GQ:PL 0/1:8,61:70:73:73,0,127 chrVII 1083423 . G A 206 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9030;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=0;MQRankSum=1.517;QD=3.89;ReadPosRankSum=2.170;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:2,51:53:30:239,30,0 chrVII 1083425 . G A 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.121;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9030;MLEAC=1;MLEAF=0.500;MQ=25.00;MQ0=0;MQRankSum=1.252;QD=0.65;ReadPosRankSum=-4.145;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:7,50:57:67:67,0,122 chrVII 1083426 . G A 32.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.808;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9030;MLEAC=1;MLEAF=0.500;MQ=25.00;MQ0=0;MQRankSum=2.127;QD=0.56;ReadPosRankSum=-3.951;SB=-1.730e+02 GT:AD:DP:GQ:PL 0/1:7,50:57:62:62,0,124 chrVII 1083430 . G A 201.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.308;DP=82;Dels=0.00;FS=2.311;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=27.19;MQ0=0;MQRankSum=2.028;QD=2.45;ReadPosRankSum=-3.689;SB=-3.367e+02 GT:AD:DP:GQ:PL 0/1:7,71:82:99:231,0,104 chrVII 1083431 . C G 68.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;DP=86;Dels=0.00;FS=2.305;HaplotypeScore=4.0159;MLEAC=1;MLEAF=0.500;MQ=27.28;MQ0=0;MQRankSum=-2.732;QD=0.79;ReadPosRankSum=3.538;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,7:86:98:98,0,285 chrVII 1083434 . G A 383.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.467;DP=90;Dels=0.00;FS=4.663;HaplotypeScore=5.5932;MLEAC=1;MLEAF=0.500;MQ=27.67;MQ0=0;MQRankSum=3.161;QD=4.26;ReadPosRankSum=-2.544;SB=-4.470e+02 GT:AD:DP:GQ:PL 0/1:7,83:90:82:413,0,82 chrVII 1083448 . G A 65.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.696;DP=125;Dels=0.00;FS=133.362;HaplotypeScore=15.3638;MLEAC=1;MLEAF=0.500;MQ=28.03;MQ0=0;MQRankSum=-2.499;QD=0.52;ReadPosRankSum=3.672;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,81:125:95:95,0,862 chrVII 1083467 . T C 206.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.103;DP=177;Dels=0.00;FS=133.509;HaplotypeScore=6.3964;MLEAC=1;MLEAF=0.500;MQ=26.73;MQ0=0;MQRankSum=-1.064;QD=1.16;ReadPosRankSum=-1.192;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,113:177:99:236,0,1161 chrVII 1083474 . A G 232.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.137;DP=179;Dels=0.00;FS=163.730;HaplotypeScore=7.3396;MLEAC=1;MLEAF=0.500;MQ=27.33;MQ0=0;MQRankSum=-1.150;QD=1.30;ReadPosRankSum=-3.703;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,117:179:99:262,0,1189 chrVII 1083495 . A G 337.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.633;DP=197;Dels=0.00;FS=245.284;HaplotypeScore=22.6329;MLEAC=1;MLEAF=0.500;MQ=27.55;MQ0=0;MQRankSum=-0.988;QD=1.71;ReadPosRankSum=-3.412;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,112:197:99:367,0,1493 chrVII 1083498 . A G 391.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.011;DP=199;Dels=0.00;FS=117.371;HaplotypeScore=24.4149;MLEAC=1;MLEAF=0.500;MQ=27.41;MQ0=0;MQRankSum=-3.880;QD=1.96;ReadPosRankSum=-2.492;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,128:199:99:421,0,1490 chrVII 1083520 . T C 478.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.594;DP=203;Dels=0.00;FS=123.583;HaplotypeScore=31.2557;MLEAC=1;MLEAF=0.500;MQ=27.95;MQ0=0;MQRankSum=-1.791;QD=2.35;ReadPosRankSum=2.684;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:96,105:203:99:508,0,1374 chrVII 1083521 . A G 467.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.122;DP=202;Dels=0.00;FS=143.486;HaplotypeScore=30.4123;MLEAC=1;MLEAF=0.500;MQ=28.19;MQ0=0;MQRankSum=-1.148;QD=2.31;ReadPosRankSum=2.133;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:92,109:202:99:497,0,1321 chrVII 1083530 . A G 724.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.623;DP=185;Dels=0.00;FS=120.881;HaplotypeScore=21.6797;MLEAC=1;MLEAF=0.500;MQ=30.18;MQ0=0;MQRankSum=-0.311;QD=3.91;ReadPosRankSum=1.463;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:74,109:185:99:754,0,1213 chrVII 1083596 . A T 2062.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;DP=157;Dels=0.00;FS=2.639;HaplotypeScore=25.0364;MLEAC=1;MLEAF=0.500;MQ=36.51;MQ0=0;MQRankSum=-0.092;QD=13.13;ReadPosRankSum=3.634;SB=-7.082e+02 GT:AD:DP:GQ:PL 0/1:13,144:157:36:2092,0,36 chrVII 1083601 . A C 1799.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.283;DP=155;Dels=0.00;FS=14.585;HaplotypeScore=15.3176;MLEAC=1;MLEAF=0.500;MQ=36.46;MQ0=3;MQRankSum=1.882;QD=11.61;ReadPosRankSum=4.823;SB=-5.449e+02 GT:AD:DP:GQ:PL 0/1:23,132:155:99:1829,0,204 chrVII 1083602 . G A 1911.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.648;DP=157;Dels=0.00;FS=15.243;HaplotypeScore=21.0093;MLEAC=1;MLEAF=0.500;MQ=36.59;MQ0=3;MQRankSum=1.856;QD=12.17;ReadPosRankSum=4.548;SB=-5.890e+02 GT:AD:DP:GQ:PL 0/1:22,133:157:99:1941,0,141 chrVII 1083725 . C T 1238.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.658;DP=361;Dels=0.00;FS=67.018;HaplotypeScore=127.6367;MLEAC=1;MLEAF=0.500;MQ=30.13;MQ0=0;MQRankSum=-6.048;QD=3.43;ReadPosRankSum=-3.077;SB=-2.000e+02 GT:AD:DP:GQ:PL 0/1:190,170:361:99:1268,0,3717 chrVII 1083754 . C T 158.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.355;DP=340;Dels=0.00;FS=0.569;HaplotypeScore=153.8817;MLEAC=1;MLEAF=0.500;MQ=31.11;MQ0=0;MQRankSum=-5.610;QD=0.46;ReadPosRankSum=-3.322;SB=-2.040e+02 GT:AD:DP:GQ:PL 0/1:185,59:340:99:188,0,3959 chrVII 1083765 . C T 407.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;DP=358;Dels=0.00;FS=55.436;HaplotypeScore=107.7218;MLEAC=1;MLEAF=0.500;MQ=31.32;MQ0=0;MQRankSum=-9.979;QD=1.14;ReadPosRankSum=0.659;SB=-2.650e+02 GT:AD:DP:GQ:PL 0/1:190,166:358:99:437,0,3854 chrVII 1083769 . A G 333.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.309;DP=360;Dels=0.00;FS=51.062;HaplotypeScore=114.7950;MLEAC=1;MLEAF=0.500;MQ=31.48;MQ0=1;MQRankSum=-7.828;QD=0.93;ReadPosRankSum=0.878;SB=-3.260e+02 GT:AD:DP:GQ:PL 0/1:193,167:360:99:363,0,4075 chrVII 1083785 . T G 480.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.129;DP=389;Dels=0.00;FS=19.609;HaplotypeScore=79.1266;MLEAC=1;MLEAF=0.500;MQ=30.53;MQ0=7;MQRankSum=-7.523;QD=1.23;ReadPosRankSum=-0.506;SB=-4.290e+02 GT:AD:DP:GQ:PL 0/1:207,181:389:99:510,0,3859 chrVII 1083803 . C T 112.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.224;DP=328;Dels=0.00;FS=107.770;HaplotypeScore=84.3604;MLEAC=1;MLEAF=0.500;MQ=30.10;MQ0=12;MQRankSum=-6.695;QD=0.34;ReadPosRankSum=0.430;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:216,111:328:99:142,0,3716 chrVII 1083844 . G A 346.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.661;DP=421;Dels=0.00;FS=318.486;HaplotypeScore=101.1984;MLEAC=1;MLEAF=0.500;MQ=25.70;MQ0=49;MQRankSum=1.214;QD=0.82;ReadPosRankSum=4.507;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:366,55:421:99:376,0,4229 chrVII 1083846 . A C 533.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.591;DP=425;Dels=0.00;FS=64.654;HaplotypeScore=95.5477;MLEAC=1;MLEAF=0.500;MQ=25.55;MQ0=49;MQRankSum=2.182;QD=1.25;ReadPosRankSum=2.661;SB=-3.830e+02 GT:AD:DP:GQ:PL 0/1:286,124:425:99:563,0,4540 chrVII 1083860 . G T 1931.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.563;DP=530;Dels=0.00;FS=56.260;HaplotypeScore=175.7863;MLEAC=1;MLEAF=0.500;MQ=25.50;MQ0=48;MQRankSum=-1.894;QD=3.64;ReadPosRankSum=8.105;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:234,174:530:99:1961,0,2703 chrVII 1083875 . A C 11153.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.157;DP=700;Dels=0.00;FS=3.193;HaplotypeScore=44.3366;MLEAC=2;MLEAF=1.00;MQ=25.64;MQ0=45;MQRankSum=-1.004;QD=15.93;ReadPosRankSum=0.033;SB=-4.511e+03 GT:AD:DP:GQ:PL 1/1:2,672:700:99:11153,1270,0 chrVII 1083888 . C T 5459.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=18.876;DP=843;Dels=0.00;FS=337.886;HaplotypeScore=78.2287;MLEAC=1;MLEAF=0.500;MQ=25.66;MQ0=43;MQRankSum=1.026;QD=6.48;ReadPosRankSum=8.420;SB=-2.477e+03 GT:AD:DP:GQ:PL 0/1:466,375:843:99:5459,0,6024 chrVII 1083925 . T C 10998.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.933;DP=996;DS;Dels=0.00;FS=353.557;HaplotypeScore=183.1150;MLEAC=1;MLEAF=0.500;MQ=26.48;MQ0=15;MQRankSum=2.062;QD=11.04;ReadPosRankSum=7.490;SB=-1.330e+03 GT:AD:DP:GQ:PL 0/1:315,681:996:99:10998,0,3509 chrVII 1083993 . C T 7128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.363;DP=565;DS;Dels=0.00;FS=299.620;HaplotypeScore=78.5103;MLEAC=1;MLEAF=0.500;MQ=27.22;MQ0=9;MQRankSum=2.892;QD=12.62;ReadPosRankSum=5.892;SB=-1.028e+03 GT:AD:DP:GQ:PL 0/1:171,391:565:99:7128,0,1162 chrVII 1084008 . G A 7900.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=8.930;DP=537;DS;Dels=0.00;FS=1.214;HaplotypeScore=54.4282;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=10;MQRankSum=-0.746;QD=14.71;ReadPosRankSum=-7.077;SB=-3.336e+03 GT:AD:DP:GQ:PL 1/1:49,487:537:99:7900,196,0 chrVII 1084034 . G A 3336.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.114;DP=444;Dels=0.00;FS=589.436;HaplotypeScore=365.6803;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=18;MQRankSum=3.894;QD=7.51;ReadPosRankSum=-3.079;SB=-4.950e+02 GT:AD:DP:GQ:PL 0/1:260,184:444:99:3336,0,1421 chrVII 1084044 . G A 124.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.287;DP=464;Dels=0.00;FS=227.112;HaplotypeScore=713.6467;MLEAC=1;MLEAF=0.500;MQ=25.53;MQ0=14;MQRankSum=1.603;QD=0.27;ReadPosRankSum=-6.937;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:437,27:464:99:154,0,2554 chrVII 1084046 . G A 1049.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.759;DP=465;Dels=0.00;FS=52.747;HaplotypeScore=742.0523;MLEAC=1;MLEAF=0.500;MQ=25.39;MQ0=14;MQRankSum=-2.391;QD=2.26;ReadPosRankSum=9.042;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:340,123:463:99:1079,0,1442 chrVII 1084073 . T C 1933.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.870;DP=631;Dels=0.00;FS=5.250;HaplotypeScore=61.7192;MLEAC=1;MLEAF=0.500;MQ=22.85;MQ0=18;MQRankSum=1.355;QD=3.06;ReadPosRankSum=-1.890;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:198,433:631:99:1963,0,1549 chrVII 1084074 . G A 1480.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.092;DP=660;Dels=0.00;FS=0.000;HaplotypeScore=60.7276;MLEAC=1;MLEAF=0.500;MQ=23.17;MQ0=18;MQRankSum=0.710;QD=2.24;ReadPosRankSum=3.305;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:472,188:660:99:1510,0,2256 chrVII 1084076 . G A 839.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.935;DP=684;Dels=0.00;FS=0.000;HaplotypeScore=63.6478;MLEAC=1;MLEAF=0.500;MQ=23.36;MQ0=19;MQRankSum=-0.300;QD=1.23;ReadPosRankSum=3.182;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:545,139:684:99:869,0,3287 chrVII 1084101 . A G 5881.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.655;DP=858;Dels=0.00;FS=0.000;HaplotypeScore=19.8122;MLEAC=1;MLEAF=0.500;MQ=24.06;MQ0=20;MQRankSum=2.949;QD=6.85;ReadPosRankSum=5.162;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:180,677:858:99:5881,0,863 chrVII 1084103 . A G 8456.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.442;DP=841;Dels=0.00;FS=0.000;HaplotypeScore=18.0341;MLEAC=2;MLEAF=1.00;MQ=24.04;MQ0=20;MQRankSum=-0.242;QD=10.05;ReadPosRankSum=3.393;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,837:841:99:8456,974,0 chrVII 1084114 . T G 9681.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.166;DP=898;Dels=0.00;FS=26.430;HaplotypeScore=31.2511;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=19;MQRankSum=-0.283;QD=10.78;ReadPosRankSum=1.524;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,896:898:99:9681,1085,0 chrVII 1084141 . A G 12192.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.704;DP=869;Dels=0.00;FS=0.000;HaplotypeScore=744.9161;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=10;MQRankSum=4.341;QD=14.03;ReadPosRankSum=5.704;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:14,855:869:99:12192,1406,0 chrVII 1084172 . G A 8941.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.106;DP=610;Dels=0.00;FS=0.000;HaplotypeScore=18.8801;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=3;MQRankSum=3.408;QD=14.66;ReadPosRankSum=1.218;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:31,579:610:99:8941,719,0 chrVII 1084181 . A G 6953.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.779;DP=508;Dels=0.00;FS=0.000;HaplotypeScore=25.1134;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=2;MQRankSum=5.772;QD=13.69;ReadPosRankSum=2.268;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:36,472:508:99:6953,551,0 chrVII 1084191 . A G 6286.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.771;DP=410;Dels=0.00;FS=0.000;HaplotypeScore=16.7660;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=2;MQRankSum=0.998;QD=15.33;ReadPosRankSum=5.903;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:12,398:410:99:6286,705,0 chrVII 1084231 . G T 67.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.278;DP=73;Dels=0.03;FS=0.000;HaplotypeScore=68.4179;MLEAC=1;MLEAF=0.500;MQ=25.91;MQ0=0;MQRankSum=1.812;QD=0.92;ReadPosRankSum=4.009;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,17:71:97:97,0,486 chrVII 1084232 . A G 662 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.681;DP=65;Dels=0.03;FS=0.000;HaplotypeScore=55.5925;MLEAC=2;MLEAF=1.00;MQ=25.83;MQ0=0;MQRankSum=-0.386;QD=10.18;ReadPosRankSum=-1.065;SB=-3.070e-03 GT:AD:DP:GQ:PL 1/1:6,57:63:61:695,61,0 chrVII 1084240 . T G 81.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.917;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=36.5418;MLEAC=1;MLEAF=0.500;MQ=25.79;MQ0=0;MQRankSum=1.078;QD=1.31;ReadPosRankSum=4.087;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,16:62:99:111,0,396 chrVII 1084260 . G A 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.276;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=30.8806;MLEAC=1;MLEAF=0.500;MQ=26.40;MQ0=0;MQRankSum=2.358;QD=3.29;ReadPosRankSum=2.725;SB=-6.028e-03 GT:AD:DP:GQ:PL 0/1:8,16:24:46:109,0,46 chrVII 1084276 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=0;MQRankSum=-1.504;QD=1.39;ReadPosRankSum=1.504;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:1,14:15:6:52,6,0 chrVIII 1754 . T C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.246;DP=17;Dels=0.00;FS=25.185;HaplotypeScore=3.8936;MLEAC=2;MLEAF=1.00;MQ=10.78;MQ0=6;MQRankSum=2.037;QD=0.93;ReadPosRankSum=-2.520;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:5,12:17:6:47,6,0 chrVIII 1780 . C A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=9.26;MQ0=11;QD=0.79;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:6:51,6,0 chrVIII 1988 . T G 32.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.50;MQ0=2;QD=3.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:9:65,9,0 chrVIII 5071 . G A 97.13 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=17.0681;MLEAC=2;MLEAF=1.00;MQ=15.36;MQ0=0;QD=2.86;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,34:34:18:130,18,0 chrVIII 5118 . C T 23.24 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.117;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=204.8696;MLEAC=1;MLEAF=0.500;MQ=15.18;MQ0=0;MQRankSum=2.109;QD=0.18;ReadPosRankSum=0.163;SB=-3.229e+00 GT:AD:DP:GQ:PL 0/1:24,103:127:10:53,0,10 chrVIII 5121 . G A 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=85.4138;MLEAC=2;MLEAF=1.00;MQ=15.23;MQ0=0;QD=0.44;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,124:124:12:87,12,0 chrVIII 5124 . C T 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.288;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=138.0801;MLEAC=2;MLEAF=1.00;MQ=15.23;MQ0=0;MQRankSum=-1.346;QD=0.44;ReadPosRankSum=0.104;SB=2.49 GT:AD:DP:GQ:PL 1/1:19,105:124:12:87,12,0 chrVIII 5134 . A C 23.24 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.667;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=116.0228;MLEAC=1;MLEAF=0.500;MQ=15.23;MQ0=0;MQRankSum=3.776;QD=0.20;ReadPosRankSum=0.608;SB=-2.184e-01 GT:AD:DP:GQ:PL 0/1:57,60:117:10:53,0,10 chrVIII 5278 . C T 697.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.672;DP=179;Dels=0.00;FS=46.130;HaplotypeScore=18.5117;MLEAC=1;MLEAF=0.500;MQ=12.97;MQ0=56;MQRankSum=3.357;QD=3.89;ReadPosRankSum=-5.550;SB=-1.002e+00 GT:AD:DP:GQ:PL 0/1:83,96:179:99:727,0,159 chrVIII 5292 . C A 216.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.621;DP=210;Dels=0.00;FS=2.154;HaplotypeScore=80.1309;MLEAC=1;MLEAF=0.500;MQ=13.53;MQ0=55;MQRankSum=-2.893;QD=1.03;ReadPosRankSum=-0.867;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:126,84:210:99:246,0,929 chrVIII 5295 . C T 96.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;DP=213;Dels=0.00;FS=6.524;HaplotypeScore=87.8698;MLEAC=1;MLEAF=0.500;MQ=13.44;MQ0=58;MQRankSum=4.404;QD=0.45;ReadPosRankSum=-4.460;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:192,21:213:99:126,0,1064 chrVIII 5298 . C T 1438 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.686;DP=211;Dels=0.00;FS=18.546;HaplotypeScore=45.4114;MLEAC=2;MLEAF=1.00;MQ=13.50;MQ0=56;MQRankSum=2.418;QD=6.82;ReadPosRankSum=4.211;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:37,174:211:99:1471,145,0 chrVIII 5331 . C T 788.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.650;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=51.2897;MLEAC=1;MLEAF=0.500;MQ=12.49;MQ0=64;MQRankSum=5.613;QD=3.88;ReadPosRankSum=-0.441;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:96,102:203:99:818,0,234 chrVIII 5337 . C T 767.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.099;DP=201;Dels=0.00;FS=16.873;HaplotypeScore=52.0784;MLEAC=1;MLEAF=0.500;MQ=12.55;MQ0=62;MQRankSum=5.055;QD=3.82;ReadPosRankSum=0.044;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,91:201:99:797,0,255 chrVIII 5366 . C T 274.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.169;DP=177;Dels=0.00;FS=8.792;HaplotypeScore=66.5467;MLEAC=1;MLEAF=0.500;MQ=12.74;MQ0=75;MQRankSum=2.213;QD=1.55;ReadPosRankSum=3.700;SB=-6.501e+01 GT:AD:DP:GQ:PL 0/1:95,73:177:99:304,0,373 chrVIII 5385 . T A 137.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.5230;MLEAC=2;MLEAF=1.00;MQ=8.68;MQ0=75;MQRankSum=-1.369;QD=1.46;ReadPosRankSum=1.552;SB=-5.204e+01 GT:AD:DP:GQ:PL 1/1:1,93:94:21:170,21,0 chrVIII 5423 . C T 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.858;DP=76;Dels=0.00;FS=3.473;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=11.36;MQ0=47;MQRankSum=-1.950;QD=0.79;ReadPosRankSum=1.904;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:50,25:76:78:90,0,78 chrVIII 5434 . A T 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790;DP=64;Dels=0.00;FS=19.445;HaplotypeScore=17.3460;MLEAC=1;MLEAF=0.500;MQ=12.38;MQ0=35;MQRankSum=-1.573;QD=0.27;ReadPosRankSum=0.813;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,7:64:47:47,0,92 chrVIII 5521 . C T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.07;MQ0=5;QD=1.05;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:5,11:16:6:48,6,0 chrVIII 5528 . A G 65.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;DP=27;Dels=0.00;FS=5.315;HaplotypeScore=4.3567;MLEAC=1;MLEAF=0.500;MQ=17.96;MQ0=8;MQRankSum=-1.123;QD=2.42;ReadPosRankSum=1.531;SB=-5.609e+01 GT:AD:DP:GQ:PL 0/1:9,16:27:10:95,0,10 chrVIII 5556 . C T 136.06 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=17.25;MQ0=11;QD=5.04;SB=-6.506e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:21:169,21,0 chrVIII 5573 . T G 84.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;DP=39;Dels=0.00;FS=13.359;HaplotypeScore=5.9696;MLEAC=1;MLEAF=0.500;MQ=16.83;MQ0=13;MQRankSum=0.290;QD=2.16;ReadPosRankSum=3.979;SB=-5.042e+01 GT:AD:DP:GQ:PL 0/1:25,14:39:7:114,0,7 chrVIII 5580 . C A 177.01 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.9738;MLEAC=2;MLEAF=1.00;MQ=16.41;MQ0=14;QD=4.12;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:27:210,27,0 chrVIII 5600 . T C 108.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.956;DP=68;Dels=0.00;FS=4.672;HaplotypeScore=16.8636;MLEAC=1;MLEAF=0.500;MQ=17.83;MQ0=12;MQRankSum=-2.465;QD=1.59;ReadPosRankSum=1.693;SB=-9.601e+01 GT:AD:DP:GQ:PL 0/1:25,43:68:99:138,0,209 chrVIII 5610 . T C 220.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.560;DP=76;Dels=0.00;FS=4.963;HaplotypeScore=28.7269;MLEAC=1;MLEAF=0.500;MQ=17.63;MQ0=11;MQRankSum=1.637;QD=2.89;ReadPosRankSum=0.425;SB=-5.201e+01 GT:AD:DP:GQ:PL 0/1:55,21:76:99:250,0,179 chrVIII 5625 . T C 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;DP=73;Dels=0.00;FS=2.077;HaplotypeScore=13.7767;MLEAC=1;MLEAF=0.500;MQ=16.89;MQ0=8;MQRankSum=3.058;QD=0.59;ReadPosRankSum=0.391;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:60,13:73:73:73,0,284 chrVIII 5631 . A G 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.826;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.91;MQ0=7;MQRankSum=3.369;QD=0.39;ReadPosRankSum=1.222;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:64,12:76:60:60,0,287 chrVIII 5642 . T C 434 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.542;DP=82;Dels=0.00;FS=39.308;HaplotypeScore=46.8209;MLEAC=2;MLEAF=1.00;MQ=17.49;MQ0=9;MQRankSum=5.113;QD=5.29;ReadPosRankSum=-1.183;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:29,53:82:57:467,57,0 chrVIII 5645 . T C 232.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.870;DP=85;Dels=0.00;FS=2.682;HaplotypeScore=49.1869;MLEAC=1;MLEAF=0.500;MQ=18.03;MQ0=9;MQRankSum=1.777;QD=2.73;ReadPosRankSum=3.554;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:64,21:85:99:262,0,158 chrVIII 5648 . T C 47.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.346;DP=85;Dels=0.00;FS=20.624;HaplotypeScore=54.8971;MLEAC=1;MLEAF=0.500;MQ=18.03;MQ0=9;MQRankSum=2.985;QD=0.55;ReadPosRankSum=-4.765;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,25:85:77:77,0,385 chrVIII 5657 . A G 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;DP=84;Dels=0.00;FS=2.394;HaplotypeScore=23.6913;MLEAC=1;MLEAF=0.500;MQ=17.85;MQ0=9;MQRankSum=2.177;QD=0.18;ReadPosRankSum=-0.096;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,8:84:45:45,0,480 chrVIII 5689 . T C 88.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.835;DP=46;Dels=0.00;FS=7.759;HaplotypeScore=5.4599;MLEAC=1;MLEAF=0.500;MQ=19.53;MQ0=4;MQRankSum=2.226;QD=1.91;ReadPosRankSum=-2.386;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,8:46:99:118,0,179 chrVIII 5724 . C T 244 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=5.1335;MLEAC=2;MLEAF=1.00;MQ=24.50;MQ0=4;QD=10.61;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:30:277,30,0 chrVIII 5830 . C T 64.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.312;DP=108;Dels=0.00;FS=75.469;HaplotypeScore=52.5510;MLEAC=1;MLEAF=0.500;MQ=23.79;MQ0=0;MQRankSum=0.360;QD=0.59;ReadPosRankSum=-1.074;SB=0.015 GT:AD:DP:GQ:PL 0/1:79,29:108:94:94,0,1104 chrVIII 5837 . A C 85.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.087;DP=100;Dels=0.00;FS=85.452;HaplotypeScore=32.2731;MLEAC=1;MLEAF=0.500;MQ=23.32;MQ0=0;MQRankSum=-0.266;QD=0.85;ReadPosRankSum=0.357;SB=0.028 GT:AD:DP:GQ:PL 0/1:71,29:100:99:115,0,982 chrVIII 5856 . G A 167.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.081;DP=85;Dels=0.00;FS=65.421;HaplotypeScore=4.2061;MLEAC=1;MLEAF=0.500;MQ=22.97;MQ0=0;MQRankSum=1.228;QD=1.96;ReadPosRankSum=4.259;SB=0.631 GT:AD:DP:GQ:PL 0/1:54,31:85:99:197,0,638 chrVIII 5865 . T G 196.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346;DP=67;Dels=0.00;FS=63.153;HaplotypeScore=58.2209;MLEAC=1;MLEAF=0.500;MQ=22.96;MQ0=0;MQRankSum=1.767;QD=2.93;ReadPosRankSum=3.041;SB=-3.014e+00 GT:AD:DP:GQ:PL 0/1:36,31:67:99:226,0,455 chrVIII 5878 . T C 91.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;DP=45;Dels=0.00;FS=20.645;HaplotypeScore=95.0786;MLEAC=1;MLEAF=0.500;MQ=23.57;MQ0=0;MQRankSum=1.258;QD=2.02;ReadPosRankSum=5.232;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:22,21:45:99:121,0,189 chrVIII 5883 . G T 49.24 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.927;DP=28;Dels=0.00;FS=31.096;HaplotypeScore=19.4314;MLEAC=1;MLEAF=0.500;MQ=25.15;MQ0=0;MQRankSum=2.313;QD=1.76;ReadPosRankSum=-2.163;SB=11.02 GT:AD:DP:GQ:PL 0/1:8,7:28:57:77,0,57 chrVIII 5887 . G A 185.03 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.9813;MLEAC=2;MLEAF=1.00;MQ=25.97;MQ0=0;QD=9.74;SB=-2.504e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:24:218,24,0 chrVIII 5890 . C A 101.26 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.44;MQ0=0;QD=7.79;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:134,15,0 chrVIII 5893 . A G 58.11 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.270;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.44;MQ0=0;MQRankSum=0.888;QD=4.47;ReadPosRankSum=-0.296;SB=-1.071e-01 GT:AD:DP:GQ:PL 0/1:2,11:13:13:88,0,13 chrVIII 5898 . T G 102.26 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=8.52;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:135,15,0 chrVIII 5928 . C A 355 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=22.6170;MLEAC=2;MLEAF=1.00;MQ=26.13;MQ0=0;QD=12.68;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:45:388,45,0 chrVIII 5942 . G A 477 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=13.63;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:60:510,60,0 chrVIII 5953 . T C 549 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=13.39;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:69:582,69,0 chrVIII 5954 . G T 562 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;MQRankSum=0.211;QD=13.71;ReadPosRankSum=1.648;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,40:41:69:595,69,0 chrVIII 5973 . C T 843 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=0;QD=15.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:876,99,0 chrVIII 5995 . G A 807 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.03;MQ0=0;QD=15.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:93:840,93,0 chrVIII 6017 . A C 534 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.18;MQ0=0;QD=14.43;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:66:567,66,0 chrVIII 6036 . G A 318 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.83;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:39:351,39,0 chrVIII 6037 . T C 279 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.13;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:39:312,39,0 chrVIII 6038 . A G 303 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.17;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:39:336,39,0 chrVIII 6053 . T C 167.03 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.14;SB=-3.878e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:200,24,0 chrVIII 6069 . A G 45.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.19;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:78,9,0 chrVIII 6083 . T A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:54,6,0 chrVIII 6088 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrVIII 6515 . T G 270 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=22.50;SB=-2.200e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:36:303,36,0 chrVIII 6516 . T A 242 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=20.17;SB=-2.200e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:33:275,33,0 chrVIII 6517 . T G 260 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=0;MQRankSum=0.401;QD=20.00;ReadPosRankSum=1.470;SB=-2.200e+01 GT:AD:DP:GQ:PL 1/1:1,12:13:36:293,36,0 chrVIII 6529 . T G 331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.606;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.50;MQ0=1;MQRankSum=0.355;QD=17.42;ReadPosRankSum=2.606;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:3,16:19:45:364,45,0 chrVIII 6531 . A C 332 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.64;MQ0=1;QD=14.43;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,22:23:45:365,45,0 chrVIII 6569 . C G 240.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.055;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.16;MQ0=2;MQRankSum=-2.587;QD=6.00;ReadPosRankSum=1.769;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,18:40:99:270,0,362 chrVIII 6592 . A G 69.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=4.6276;MLEAC=1;MLEAF=0.500;MQ=17.30;MQ0=2;MQRankSum=-1.361;QD=2.46;ReadPosRankSum=-3.250;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,10:28:99:99,0,300 chrVIII 6600 . G A 532 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=9.2551;MLEAC=2;MLEAF=1.00;MQ=17.30;MQ0=2;QD=19.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:75:565,75,0 chrVIII 6611 . C T 477 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.64;MQ0=1;QD=18.35;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:69:510,69,0 chrVIII 6617 . C T 306.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.242;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=17.69;MQ0=1;MQRankSum=1.603;QD=12.75;ReadPosRankSum=-1.901;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:5,19:24:21:336,0,21 chrVIII 6687 . A G 56.42 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=23.77;MQ0=0;MQRankSum=0.348;QD=5.64;ReadPosRankSum=1.393;SB=-2.330e+01 GT:AD:DP:GQ:PL 0/1:1,9:10:7:86,0,7 chrVIII 6711 . T C 199 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.41;MQ0=0;QD=11.71;SB=-1.506e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:30:232,30,0 chrVIII 6734 . G A 452 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.06;MQ0=0;QD=16.74;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:63:485,63,0 chrVIII 6737 . G A 473 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.93;MQ0=0;QD=16.89;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:66:506,66,0 chrVIII 6750 . C T 467 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.87;MQ0=0;QD=16.10;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:66:500,66,0 chrVIII 6751 . G A 338.04 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.858;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.87;MQ0=0;MQRankSum=0.779;QD=11.66;ReadPosRankSum=-1.068;SB=0.930 GT:AD:DP:GQ:PL 0/1:5,24:29:18:368,0,18 chrVIII 6752 . G A 330.04 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.530;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.87;MQ0=0;MQRankSum=0.548;QD=11.38;ReadPosRankSum=-1.241;SB=0.930 GT:AD:DP:GQ:PL 0/1:5,24:29:18:360,0,18 chrVIII 6755 . C A 487 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.78;MQ0=0;QD=16.23;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:69:520,69,0 chrVIII 6759 . A G 337.04 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.949;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.78;MQ0=0;MQRankSum=1.948;QD=11.23;ReadPosRankSum=-1.614;SB=1.72 GT:AD:DP:GQ:PL 0/1:5,25:30:18:367,0,18 chrVIII 6799 . C A 353 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.85;MQ0=0;QD=16.81;SB=-6.580e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:51:386,51,0 chrVIII 6808 . T A 179.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=19.52;MQ0=0;MQRankSum=-1.752;QD=9.95;ReadPosRankSum=2.177;SB=0.026 GT:AD:DP:GQ:PL 0/1:4,14:18:23:209,0,23 chrVIII 6812 . A G 235 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=19.66;MQ0=0;MQRankSum=-1.416;QD=13.82;ReadPosRankSum=2.162;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:2,15:17:36:268,36,0 chrVIII 6823 . C T 101.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.92;MQ0=0;QD=12.64;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:134,18,0 chrVIII 7190 . C A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.73;MQ0=1;QD=0.39;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,53:54:6:52,6,0 chrVIII 7195 . A G 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.08;MQ0=1;QD=0.37;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,47:48:6:49,6,0 chrVIII 7201 . G C 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.74;MQ0=1;QD=0.54;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,42:44:6:55,6,0 chrVIII 7205 . T C 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.76;MQ0=1;QD=0.66;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,35:36:6:55,6,0 chrVIII 7207 . T C 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.76;MQ0=1;QD=0.66;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,35:36:6:55,6,0 chrVIII 7208 . A T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.76;MQ0=1;QD=0.61;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,35:36:6:53,6,0 chrVIII 7214 . A G 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=1;QD=0.91;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,24:25:6:54,6,0 chrVIII 7215 . C T 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=1;QD=0.99;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,24:25:6:56,6,0 chrVIII 7217 . A T 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=1;QD=0.91;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,24:25:6:54,6,0 chrVIII 7219 . A G 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=1;QD=0.91;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,23:24:6:54,6,0 chrVIII 7220 . G C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.433;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=1;MQRankSum=-0.144;QD=0.79;ReadPosRankSum=1.445;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,23:25:6:51,6,0 chrVIII 7221 . A T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=1;QD=0.87;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,23:25:6:53,6,0 chrVIII 7227 . A G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=1;QD=0.67;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,24:25:6:48,6,0 chrVIII 7228 . A T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;QD=0.99;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,24:24:6:55,6,0 chrVIII 7253 . G A 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=0.54;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,35:35:6:50,6,0 chrVIII 7256 . A C 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=0.65;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,35:35:6:54,6,0 chrVIII 7258 . A C 33.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=0.96;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,35:35:6:65,6,0 chrVIII 7265 . C G 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=1;QD=0.86;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,49:49:9:74,9,0 chrVIII 7270 . G A 49.97 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=1;QD=0.79;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,62:63:9:82,9,0 chrVIII 7411 . C T 2041 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.29;MQ0=1;QD=22.93;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2074,231,0 chrVIII 7426 . G C 2121 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=0;QD=20.39;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2154,246,0 chrVIII 7576 . A T 1652 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;QD=18.15;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1685,186,0 chrVIII 7596 . C G 1599 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=18.81;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1632,183,0 chrVIII 7641 . C T 1833 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=18.52;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1866,207,0 chrVIII 7656 . T A 1876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=100;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.03;MQ0=0;MQRankSum=1.143;QD=18.76;ReadPosRankSum=1.697;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1909,210,0 chrVIII 7694 . A G 1652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.74;MQ0=0;MQRankSum=-1.064;QD=19.90;ReadPosRankSum=1.690;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1685,189,0 chrVIII 7696 . C T 1622 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;QD=19.78;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1655,189,0 chrVIII 7714 . G T 1166 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.98;MQ0=0;QD=18.81;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1199,135,0 chrVIII 7727 . A C 948 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=0;QD=17.56;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:981,117,0 chrVIII 7742 . C A 653 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.12;MQ0=0;QD=15.93;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:78:686,78,0 chrVIII 7747 . T C 604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=5.911;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.53;MQ0=0;MQRankSum=-1.288;QD=15.49;ReadPosRankSum=1.644;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:75:637,75,0 chrVIII 7767 . T C 1004 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=32.98;MQ0=0;QD=17.93;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1037,123,0 chrVIII 7823 . A G 2215 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.72;MQ0=0;QD=23.07;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2248,264,0 chrVIII 7825 . A G 2110 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.72;MQ0=0;QD=21.98;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2143,260,0 chrVIII 7835 . A C 2319 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;QD=21.47;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2352,279,0 chrVIII 7882 . A T 1076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=39.72;MQ0=0;MQRankSum=-1.386;QD=17.93;ReadPosRankSum=1.617;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1109,126,0 chrVIII 7900 . G A 697 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=0;QD=17.00;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:84:730,84,0 chrVIII 7930 . G T 307 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=10.23;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:42:340,42,0 chrVIII 7938 . A C 248 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=21.3582;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=0;QD=8.86;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:36:281,36,0 chrVIII 7939 . G A 251 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=21.3582;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=0;QD=8.96;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:36:284,36,0 chrVIII 7959 . A G 630 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.64;MQ0=0;QD=13.12;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:81:663,81,0 chrVIII 7965 . G C 756 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=0;QD=12.19;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:789,99,0 chrVIII 7987 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.36;MQ0=0;QD=17.41;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1722,207,0 chrVIII 8016 . T G 1835 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.74;MQ0=0;QD=17.82;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1868,233,0 chrVIII 8034 . T C 1749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.727;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;MQRankSum=1.054;QD=19.01;ReadPosRankSum=1.694;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1782,230,0 chrVIII 8042 . G A 1688 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;QD=19.18;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1721,206,0 chrVIII 8066 . A T 1207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=3.837;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.24;MQ0=0;MQRankSum=-1.270;QD=16.09;ReadPosRankSum=1.686;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1240,155,0 chrVIII 8084 . T C 702 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;QD=13.25;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:93:735,93,0 chrVIII 8096 . G A 583 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=11.43;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:75:616,75,0 chrVIII 8105 . A G 576 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=0;QD=11.29;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:75:609,75,0 chrVIII 8144 . C T 789 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.22;MQ0=0;QD=11.60;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:822,102,0 chrVIII 8151 . C T 768 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.09;MQ0=0;QD=11.46;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:801,99,0 chrVIII 8165 . T C 991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=3.060;HaplotypeScore=2.7834;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=0;MQRankSum=-1.599;QD=11.80;ReadPosRankSum=2.391;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1024,131,0 chrVIII 8183 . G T 1177 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=13.53;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1210,152,0 chrVIII 8221 . A G 1313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=3.199;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.11;MQ0=0;MQRankSum=-0.369;QD=13.97;ReadPosRankSum=1.695;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1346,170,0 chrVIII 8233 . G A 1246 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.95;MQ0=0;QD=15.01;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1279,158,0 chrVIII 8258 . C T 1070 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.14;MQ0=0;QD=12.02;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1103,135,0 chrVIII 8261 . G C 1150 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.60;MQ0=0;QD=12.64;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1183,144,0 chrVIII 8267 . T C 1155 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;MQRankSum=-1.327;QD=12.16;ReadPosRankSum=1.622;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1188,147,0 chrVIII 8316 . G T 1542 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.66;MQ0=0;QD=13.53;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1575,180,0 chrVIII 8321 . C T 1664 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=13.98;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1697,189,0 chrVIII 8399 . G T 2382 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.02;FS=0.000;HaplotypeScore=25.6738;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=19.69;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2415,273,0 chrVIII 8417 . G C 2259 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=18.52;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2292,273,0 chrVIII 8434 . T C 2087 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=16.56;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2120,249,0 chrVIII 8441 . T C 2199 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;QD=17.45;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2232,258,0 chrVIII 8480 . T A 3271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=-0.717;QD=20.57;ReadPosRankSum=1.666;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3271,366,0 chrVIII 9010 . T C 2607 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.89;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2640,294,0 chrVIII 9047 . G A 2868 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.78;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2901,318,0 chrVIII 9077 . A G 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=2.923;HaplotypeScore=1.9577;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=0.752;QD=18.71;ReadPosRankSum=2.414;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2634,291,0 chrVIII 9080 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=9.6651;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=18.50;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2531,285,0 chrVIII 9169 . G A 4457.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.6201;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.96;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4457,489,0 chrVIII 9385 . G A 5535.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.06;SB=-3.215e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5535,603,0 chrVIII 9426 . T A 4621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.211;DP=208;Dels=0.00;FS=9.686;HaplotypeScore=11.7009;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.819;QD=22.22;ReadPosRankSum=2.838;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:3,204:208:99:4621,486,0 chrVIII 9704 . C T 5729.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.92;SB=-3.136e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:5729,639,0 chrVIII 9742 . C T 5034.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.20;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5034,549,0 chrVIII 9770 . A C 4639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=219;Dels=0.00;FS=4.102;HaplotypeScore=11.9584;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.529;QD=21.18;ReadPosRankSum=1.684;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:4639,519,0 chrVIII 10046 . A T 4460.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.87;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4460,504,0 chrVIII 10242 . G T 100.26 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=139.4043;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=0.65;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:15:133,15,0 chrVIII 10261 . A G 3012 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.35;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3045,339,0 chrVIII 10615 . T C 2106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=140;Dels=0.00;FS=8.976;HaplotypeScore=25.7504;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.560;QD=15.04;ReadPosRankSum=2.413;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:2,132:140:99:2139,246,0 chrVIII 10670 . T C 2887 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.7473;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.07;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2920,336,0 chrVIII 10789 . T C 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=94;Dels=0.00;FS=3.557;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=0.652;QD=18.73;ReadPosRankSum=1.658;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1794,207,0 chrVIII 10795 . C T 1579 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1213;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=17.35;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1612,177,0 chrVIII 10993 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=24.73;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2852,315,0 chrVIII 11276 . T A 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=3.730;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.457;QD=21.61;ReadPosRankSum=1.636;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3167,354,0 chrVIII 11308 . G A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.3933;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.13;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3608,399,0 chrVIII 11531 . T C 3843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.688;DP=171;Dels=0.00;FS=5.996;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.006;QD=22.47;ReadPosRankSum=2.912;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:3843,444,0 chrVIII 11580 . A G 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=170;Dels=0.00;FS=3.554;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.183;QD=22.14;ReadPosRankSum=1.691;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3763,432,0 chrVIII 11599 . A G 3855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=172;Dels=0.00;FS=6.788;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.250;QD=22.41;ReadPosRankSum=2.421;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3855,438,0 chrVIII 11625 . C G 3557.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=22.37;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3557,405,0 chrVIII 11877 . T C 109.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.514;DP=111;Dels=0.00;FS=7.255;HaplotypeScore=86.0694;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=1;MQRankSum=1.391;QD=0.98;ReadPosRankSum=3.690;SB=-6.111e+02 GT:AD:DP:GQ:PL 1/1:8,102:111:18:142,18,0 chrVIII 11931 . T C 2033 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.437;DP=200;Dels=0.00;FS=1.599;HaplotypeScore=1.9849;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=70;MQRankSum=2.133;QD=10.16;ReadPosRankSum=5.237;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:11,189:200:99:2066,234,0 chrVIII 12043 . A G 838 filter AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=17.66;MQ0=223;QD=2.88;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:106,184:291:99:871,99,0 chrVIII 12073 . G A 976 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.340;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=95;MQRankSum=2.552;QD=4.93;ReadPosRankSum=-0.896;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:96,102:198:99:1009,111,0 chrVIII 12505 . A G 200.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=4.44;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,45:45:27:233,27,0 chrVIII 12511 . T A 309 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=7.72;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:39:342,39,0 chrVIII 12512 . T C 289 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=7.22;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:39:322,39,0 chrVIII 12513 . A C 289 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=7.22;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:39:322,39,0 chrVIII 12520 . T C 301 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.780;DP=48;Dels=0.00;FS=13.802;HaplotypeScore=2.6000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;MQRankSum=1.780;QD=6.27;ReadPosRankSum=2.348;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:2,46:48:39:334,39,0 chrVIII 12522 . A G 297 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.155;DP=48;Dels=0.00;FS=16.812;HaplotypeScore=2.6000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;MQRankSum=1.660;QD=6.19;ReadPosRankSum=1.588;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:1,47:48:39:330,39,0 chrVIII 12528 . G A 328 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;DP=51;Dels=0.00;FS=17.076;HaplotypeScore=3.4667;MLEAC=2;MLEAF=1.00;MQ=26.39;MQ0=0;MQRankSum=1.664;QD=6.43;ReadPosRankSum=1.325;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:1,50:51:42:361,42,0 chrVIII 12529 . G T 332 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.325;DP=51;Dels=0.00;FS=17.076;HaplotypeScore=3.4667;MLEAC=2;MLEAF=1.00;MQ=26.39;MQ0=0;MQRankSum=1.664;QD=6.51;ReadPosRankSum=1.325;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:1,50:51:42:365,42,0 chrVIII 12533 . G A 329 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.850;DP=55;Dels=0.00;FS=17.404;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=0;MQRankSum=1.669;QD=5.98;ReadPosRankSum=0.913;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:1,54:55:42:362,42,0 chrVIII 12546 . T C 362 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.619;DP=61;Dels=0.00;FS=17.853;HaplotypeScore=54.2930;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=0;MQRankSum=1.675;QD=5.93;ReadPosRankSum=-0.142;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:1,60:61:48:395,48,0 chrVIII 12548 . C T 381 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=61;Dels=0.00;FS=17.853;HaplotypeScore=50.0774;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=0;MQRankSum=1.675;QD=6.25;ReadPosRankSum=-0.199;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:1,60:61:48:414,48,0 chrVIII 12557 . A G 404 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.640;DP=61;Dels=0.00;FS=14.843;HaplotypeScore=59.6117;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=0;MQRankSum=2.329;QD=6.62;ReadPosRankSum=-1.316;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:2,59:61:51:437,51,0 chrVIII 12563 . T C 397 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.519;DP=65;Dels=0.00;FS=18.129;HaplotypeScore=58.7451;MLEAC=2;MLEAF=1.00;MQ=26.98;MQ0=0;MQRankSum=1.679;QD=6.11;ReadPosRankSum=-1.732;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:1,64:65:51:430,51,0 chrVIII 12605 . G A 264 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=0;QD=5.50;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,48:48:33:297,33,0 chrVIII 12606 . G C 250 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=16.812;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=0;MQRankSum=1.660;QD=5.21;ReadPosRankSum=1.660;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:1,47:48:33:283,33,0 chrVIII 12608 . A G 258 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=13.892;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.79;MQ0=0;MQRankSum=1.591;QD=5.27;ReadPosRankSum=1.591;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:1,48:49:33:291,33,0 chrVIII 12613 . T A 290 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.064;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=0;MQRankSum=-2.257;QD=4.53;ReadPosRankSum=2.373;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:2,62:64:36:323,36,0 chrVIII 12616 . T A 289 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.55;MQ0=0;QD=4.45;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:36:322,36,0 chrVIII 12630 . A G 419 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.62;MQ0=0;QD=6.35;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:51:452,51,0 chrVIII 12669 . C G 939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.141;DP=82;Dels=0.00;FS=16.498;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=1;MQRankSum=2.219;QD=11.45;ReadPosRankSum=-1.808;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:3,77:82:73:972,73,0 chrVIII 12721 . T A 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.1450;MLEAC=2;MLEAF=1.00;MQ=41.95;MQ0=1;MQRankSum=1.550;QD=19.13;ReadPosRankSum=3.298;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:5,92:97:99:1889,182,0 chrVIII 12722 . T G 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=100;Dels=0.00;FS=2.091;HaplotypeScore=5.9337;MLEAC=2;MLEAF=1.00;MQ=41.95;MQ0=1;MQRankSum=1.679;QD=18.42;ReadPosRankSum=2.799;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:4,96:100:99:1875,187,0 chrVIII 12758 . A G 2057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=37.52;MQ0=0;MQRankSum=-0.804;QD=18.37;ReadPosRankSum=1.701;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2090,252,0 chrVIII 12780 . A G 2019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2329;MLEAC=2;MLEAF=1.00;MQ=39.89;MQ0=0;MQRankSum=-0.555;QD=17.71;ReadPosRankSum=0.860;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2052,237,0 chrVIII 12931 . G A 1621 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=20.26;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1654,180,0 chrVIII 12972 . T C 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=102;Dels=0.03;FS=3.892;HaplotypeScore=15.5850;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=-0.318;QD=18.59;ReadPosRankSum=1.697;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1929,228,0 chrVIII 13001 . G A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=94.1715;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=0.19;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:6:50,6,0 chrVIII 13137 . C A 93.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.152;DP=105;Dels=0.00;FS=12.838;HaplotypeScore=4.2608;MLEAC=1;MLEAF=0.500;MQ=42.89;MQ0=0;MQRankSum=5.082;QD=0.89;ReadPosRankSum=-5.265;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,12:105:99:123,0,454 chrVIII 13138 . C A 90.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.198;DP=103;Dels=0.00;FS=16.088;HaplotypeScore=3.4721;MLEAC=1;MLEAF=0.500;MQ=42.17;MQ0=0;MQRankSum=4.152;QD=0.87;ReadPosRankSum=-4.619;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,9:103:99:120,0,536 chrVIII 13140 . T A 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;DP=103;Dels=0.00;FS=13.484;HaplotypeScore=3.4721;MLEAC=1;MLEAF=0.500;MQ=42.17;MQ0=0;MQRankSum=3.925;QD=0.10;ReadPosRankSum=-4.305;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:96,7:103:40:40,0,637 chrVIII 13244 . C T 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.475;DP=138;Dels=0.00;FS=3.108;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=1.142;QD=23.06;ReadPosRankSum=0.346;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:1,134:138:99:3215,345,0 chrVIII 13408 . A C 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8645;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.984;QD=18.67;ReadPosRankSum=1.704;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2385,273,0 chrVIII 13429 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=18.35;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2290,255,0 chrVIII 13464 . T A 2228 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=18.57;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2261,249,0 chrVIII 13526 . A G 2877 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.97;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2910,330,0 chrVIII 13589 . A G 2408 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.38;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2441,276,0 chrVIII 13703 . T C 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.8069;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.526;QD=20.98;ReadPosRankSum=1.681;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2865,330,0 chrVIII 13851 . G A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.67;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,140:145:99:3287,363,0 chrVIII 13909 . G A 3964.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.18;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3964,441,0 chrVIII 13934 . A G 4272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.0094;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.964;QD=22.02;ReadPosRankSum=1.714;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4272,503,0 chrVIII 14034 . A C 4381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=189;Dels=0.00;FS=3.320;HaplotypeScore=13.6096;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.211;QD=23.18;ReadPosRankSum=1.714;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4381,492,0 chrVIII 14130 . G C 3419.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=21.78;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3419,393,0 chrVIII 14146 . C T 3753.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=22.47;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3753,414,0 chrVIII 14262 . T A 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=4.138;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=0.962;QD=23.40;ReadPosRankSum=1.687;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3580,393,0 chrVIII 14293 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=21.29;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3142,345,0 chrVIII 14337 . T C 2291 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=8.813;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=0.088;QD=17.90;ReadPosRankSum=2.411;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:2,124:128:99:2324,267,0 chrVIII 14338 . G A 2400 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=18.75;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2433,270,0 chrVIII 14346 . G T 2251 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=18.45;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2284,255,0 chrVIII 14381 . T C 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=-0.211;QD=18.39;ReadPosRankSum=1.704;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2332,282,0 chrVIII 14448 . T C 2802 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;MQRankSum=-0.251;QD=20.30;ReadPosRankSum=1.707;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2835,324,0 chrVIII 14452 . T G 2637 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=19.25;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2670,306,0 chrVIII 14457 . T G 2536 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=19.36;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2569,300,0 chrVIII 14579 . C T 3749.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.38;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3749,414,0 chrVIII 14584 . G C 3452.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=19.28;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3452,399,0 chrVIII 14600 . G A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=19.63;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3337,378,0 chrVIII 14669 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=20.09;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3228,357,0 chrVIII 14685 . T C 3621.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.76;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3621,408,0 chrVIII 14721 . A G 3839.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=17.45;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:3839,455,0 chrVIII 14784 . A G 4892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=17.3531;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.392;QD=21.74;ReadPosRankSum=1.701;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:4892,572,0 chrVIII 14935 . A G 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.645;DP=178;Dels=0.00;FS=7.959;HaplotypeScore=18.6413;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.088;QD=21.02;ReadPosRankSum=3.803;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:5,173:178:99:3741,423,0 chrVIII 14965 . C T 4056.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.02;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4056,444,0 chrVIII 15038 . G C 3704.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.41;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3704,426,0 chrVIII 15114 . A G 3283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=156;Dels=0.00;FS=11.939;HaplotypeScore=9.9634;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.374;QD=21.04;ReadPosRankSum=2.878;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:3283,390,0 chrVIII 15293 . C T 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.488;QD=22.11;ReadPosRankSum=-1.439;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3239,346,0 chrVIII 15490 . G A 2469 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=61.65;MQ0=0;QD=22.45;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2502,273,0 chrVIII 15569 . A T 2340 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.50;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2373,258,0 chrVIII 15638 . T C 3026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.663;DP=150;Dels=0.00;FS=10.855;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.090;QD=20.17;ReadPosRankSum=3.747;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:5,144:150:99:3059,342,0 chrVIII 15653 . T C 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3433;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.365;QD=20.12;ReadPosRankSum=1.687;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3111,357,0 chrVIII 15755 . T C 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=149;Dels=0.00;FS=9.300;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-1.293;QD=18.99;ReadPosRankSum=2.953;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:2863,327,0 chrVIII 15928 . T C 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=178;Dels=0.00;FS=2.985;HaplotypeScore=11.5376;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-1.048;QD=20.26;ReadPosRankSum=2.408;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3606,417,0 chrVIII 15937 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.4856;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.60;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3440,381,0 chrVIII 16308 . T C 2155 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=16.71;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2188,249,0 chrVIII 16326 . G A 2304 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=18.29;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2337,255,0 chrVIII 16403 . G A 2169 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.69;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2202,240,0 chrVIII 16495 . G C 2640 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.82;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2673,309,0 chrVIII 16671 . A G 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.363;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-1.282;QD=22.01;ReadPosRankSum=1.687;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3412,405,0 chrVIII 16698 . G A 3939.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.5811;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.77;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3939,438,0 chrVIII 16733 . G A 4224.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.12;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4224,468,0 chrVIII 16735 . G A 4117.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.44;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4117,456,0 chrVIII 16788 . C T 3872.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.5767;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=20.38;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3872,435,0 chrVIII 16886 . G C 4683.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=22.51;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,204:208:99:4683,534,0 chrVIII 16939 . C T 3850.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=23.48;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3850,423,0 chrVIII 17120 . A C 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;MQRankSum=-1.083;QD=18.59;ReadPosRankSum=1.705;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2413,273,0 chrVIII 17127 . T A 2279 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=94.0174;MLEAC=2;MLEAF=1.00;MQ=35.41;MQ0=0;QD=18.99;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2312,252,0 chrVIII 17132 . T G 1934 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=92.8009;MLEAC=2;MLEAF=1.00;MQ=34.06;MQ0=0;QD=17.27;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1967,225,0 chrVIII 17151 . A G 1847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.59;MQ0=0;MQRankSum=1.557;QD=15.02;ReadPosRankSum=1.703;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,118:123:99:1880,219,0 chrVIII 17157 . A G 1998 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=0;QD=16.51;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2031,234,0 chrVIII 17227 . G A 1967 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.03;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=19.48;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2000,219,0 chrVIII 17230 . C T 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.755;DP=104;Dels=0.00;FS=2.572;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=1.893;QD=18.82;ReadPosRankSum=2.697;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:3,100:104:99:1990,219,0 chrVIII 17359 . A T 2512 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=24.15;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2545,282,0 chrVIII 17641 . G A 2175 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2208,243,0 chrVIII 17751 . G T 2713 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.99;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2746,300,0 chrVIII 17937 . A G 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=109;Dels=0.00;FS=2.738;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.955;QD=21.47;ReadPosRankSum=2.358;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:2,105:109:99:2373,270,0 chrVIII 18093 . T G 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=117;Dels=0.00;FS=2.710;HaplotypeScore=6.7882;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.789;QD=21.38;ReadPosRankSum=2.387;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2535,291,0 chrVIII 18107 . A G 2378 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=8.2534;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.68;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2411,276,0 chrVIII 18197 . A G 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=164;Dels=0.00;FS=10.556;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=0.412;QD=21.48;ReadPosRankSum=2.420;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3522,399,0 chrVIII 18198 . A T 3617.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=22.19;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3617,399,0 chrVIII 18210 . G A 3555.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=21.04;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3555,387,0 chrVIII 18542 . T C 3977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=193;Dels=0.00;FS=8.589;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.847;QD=20.61;ReadPosRankSum=2.411;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,188:193:99:3977,459,0 chrVIII 18702 . A G 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=171;Dels=0.00;FS=3.440;HaplotypeScore=13.6806;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;MQRankSum=-0.591;QD=21.60;ReadPosRankSum=1.691;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3694,423,0 chrVIII 18744 . A G 3452.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;QD=21.31;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3452,410,0 chrVIII 18917 . G A 5087.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=24.94;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:5087,552,0 chrVIII 18957 . T C 4771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=209;Dels=0.00;FS=9.743;HaplotypeScore=17.4235;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.599;QD=22.83;ReadPosRankSum=2.899;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:3,205:209:99:4771,534,0 chrVIII 18989 . A G 5257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=219;Dels=0.00;FS=3.030;HaplotypeScore=12.0169;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-2.065;QD=24.00;ReadPosRankSum=0.300;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:2,216:219:99:5257,572,0 chrVIII 19035 . G A 5449.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.2937;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.90;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5449,594,0 chrVIII 19094 . C T 4373.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.90;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4373,477,0 chrVIII 19101 . A G 4172.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.84;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4172,468,0 chrVIII 19172 . G A 4128.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.9835;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.04;SB=-2.673e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4128,453,0 chrVIII 19181 . G A 4410.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.5503;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=19.95;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4410,486,0 chrVIII 19253 . A G 4269.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.03;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4269,506,0 chrVIII 19355 . A G 3684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.414;QD=21.54;ReadPosRankSum=1.645;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:3,167:171:99:3684,414,0 chrVIII 19487 . G A 5341.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=16.5510;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.43;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,224:228:99:5341,588,0 chrVIII 19808 . G A 3796.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3796,426,0 chrVIII 19914 . C T 4884.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.42;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4884,543,0 chrVIII 20117 . T C 5945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=267;Dels=0.00;FS=5.796;HaplotypeScore=23.8715;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.793;QD=22.27;ReadPosRankSum=2.951;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:3,264:267:99:5945,684,0 chrVIII 20795 . C T 4974.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.64;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:4974,546,0 chrVIII 20806 . G A 4450.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=5.4549;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.26;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4450,492,0 chrVIII 20852 . G A 3736.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.2490;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.56;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,187:191:99:3736,408,0 chrVIII 20919 . A T 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.965;DP=201;Dels=0.00;FS=11.303;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=-0.605;QD=20.16;ReadPosRankSum=2.695;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:4053,453,0 chrVIII 20921 . G A 4006.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.02;FS=0.000;HaplotypeScore=8.2561;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=20.13;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4006,438,0 chrVIII 20993 . C T 3785.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=20.35;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:3785,417,0 chrVIII 21004 . G A 3606.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=20.84;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3606,399,0 chrVIII 21033 . A T 3117 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=21.20;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3150,351,0 chrVIII 21169 . C T 3824.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.01;FS=0.000;HaplotypeScore=11.6045;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=19.71;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:3824,417,0 chrVIII 21296 . T C 3527.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=20.27;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3527,402,0 chrVIII 21337 . T C 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.315;DP=196;Dels=0.02;FS=16.170;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;MQRankSum=2.447;QD=14.98;ReadPosRankSum=3.378;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:4,189:193:99:2969,339,0 chrVIII 21340 . A G 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=196;Dels=0.00;FS=5.465;HaplotypeScore=8.0651;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;MQRankSum=-1.857;QD=14.95;ReadPosRankSum=2.841;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:2964,342,0 chrVIII 21387 . T A 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=186;Dels=0.00;FS=3.034;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;MQRankSum=-0.234;QD=15.65;ReadPosRankSum=1.695;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:2944,330,0 chrVIII 21541 . A C 2707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=-1.538;QD=21.15;ReadPosRankSum=1.677;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,124:128:99:2740,318,0 chrVIII 21579 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=22.62;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3245,354,0 chrVIII 21612 . C T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=21.60;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3543,387,0 chrVIII 21727 . G T 3127 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.57;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3160,354,0 chrVIII 22121 . C T 4556.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=16.7122;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.67;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4556,495,0 chrVIII 22203 . C T 5364.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=24.38;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5364,582,0 chrVIII 22253 . T C 4620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.8351;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.983;QD=21.90;ReadPosRankSum=1.699;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,207:211:99:4620,537,0 chrVIII 22430 . T C 3870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=195;Dels=0.00;FS=8.557;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.288;QD=19.85;ReadPosRankSum=2.411;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:2,190:195:99:3870,432,0 chrVIII 22453 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.26;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3133,345,0 chrVIII 22464 . C A 3156 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.10;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3189,357,0 chrVIII 22684 . T A 2871 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.53;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2904,330,0 chrVIII 22766 . T C 2468 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.84;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2501,297,0 chrVIII 22813 . T C 1912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.847;QD=20.78;ReadPosRankSum=1.655;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:1,89:92:99:1945,225,0 chrVIII 22833 . G A 2013 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.93;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2046,225,0 chrVIII 22834 . T G 1946 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.27;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1979,228,0 chrVIII 23105 . T C 2282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=105;Dels=0.00;FS=5.620;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-1.128;QD=21.73;ReadPosRankSum=2.932;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:3,100:105:99:2315,267,0 chrVIII 23138 . T C 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.125;QD=21.80;ReadPosRankSum=1.661;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2148,240,0 chrVIII 23453 . T G 2585 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2618,300,0 chrVIII 23641 . T C 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.3318;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.468;QD=21.27;ReadPosRankSum=1.706;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2840,327,0 chrVIII 23964 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.03;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3073,333,0 chrVIII 24238 . G A 3805.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.6920;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.87;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3805,414,0 chrVIII 24416 . T G 3024 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=17.68;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3057,351,0 chrVIII 24422 . G A 3149 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=18.74;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3182,348,0 chrVIII 24526 . C T 3772.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=17.3223;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.96;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3772,417,0 chrVIII 24604 . T C 4671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.076;QD=22.35;ReadPosRankSum=2.356;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4671,537,0 chrVIII 24674 . C T 4861.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=15.1204;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.15;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4861,528,0 chrVIII 24799 . A G 4288.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.85;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4288,489,0 chrVIII 24880 . T G 4276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=199;Dels=0.00;FS=8.150;HaplotypeScore=20.7762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.783;QD=21.49;ReadPosRankSum=2.412;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:2,194:199:99:4276,486,0 chrVIII 25004 . C T 4254.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.5130;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.63;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4254,468,0 chrVIII 25276 . G A 6216.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.46;SB=-3.166e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:6216,690,0 chrVIII 25318 . C T 6233.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.34;SB=-3.302e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6233,693,0 chrVIII 25348 . A G 5355.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.95;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5355,629,0 chrVIII 25432 . G A 5301.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.2876;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.99;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5301,588,0 chrVIII 25522 . G T 4448.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.6702;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.49;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4448,489,0 chrVIII 25552 . C A 4416.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.7731;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.86;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4416,483,0 chrVIII 25581 . T C 4832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=239;Dels=0.00;FS=5.991;HaplotypeScore=16.1618;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-0.064;QD=20.22;ReadPosRankSum=2.936;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:3,232:239:99:4832,537,0 chrVIII 25673 . T A 3097 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.926;DP=162;Dels=0.00;FS=10.853;HaplotypeScore=7.4048;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;MQRankSum=1.528;QD=19.12;ReadPosRankSum=2.485;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:3130,345,0 chrVIII 25676 . A T 3010 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=19.29;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3043,333,0 chrVIII 25677 . C T 2984 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=18.89;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3017,333,0 chrVIII 25834 . G A 3913.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=15.0237;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=22.75;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3913,429,0 chrVIII 25892 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=17.52;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2171,240,0 chrVIII 25898 . C T 2077 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=16.62;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2110,231,0 chrVIII 25911 . T C 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=0.394;QD=18.58;ReadPosRankSum=1.706;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2486,294,0 chrVIII 25945 . G A 2787 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.09;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2820,312,0 chrVIII 26177 . C T 3944.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.7885;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.65;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3944,435,0 chrVIII 26223 . T C 3895.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.39;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3895,456,0 chrVIII 26648 . C A 3958.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.88;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3958,444,0 chrVIII 26678 . A G 4081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=185;Dels=0.00;FS=8.512;HaplotypeScore=17.8053;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-2.007;QD=22.06;ReadPosRankSum=2.396;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:4081,468,0 chrVIII 26738 . C T 4194.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.5590;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.04;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4194,465,0 chrVIII 26825 . C A 3995.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.36;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3995,447,0 chrVIII 27080 . A G 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=3.055;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.247;QD=20.40;ReadPosRankSum=1.679;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4019,476,0 chrVIII 27293 . T C 3791.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.60;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3791,438,0 chrVIII 27988 . A C 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=127;Dels=0.00;FS=5.127;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.678;QD=23.10;ReadPosRankSum=1.678;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2967,342,0 chrVIII 28030 . C T 2857 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.3862;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2890,318,0 chrVIII 28073 . C T 2654 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.5497;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.08;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2687,294,0 chrVIII 28356 . T C 2581 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.5181;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=18.57;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2614,297,0 chrVIII 28362 . G T 2694 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1521;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.52;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2727,297,0 chrVIII 28416 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.52;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2980,339,0 chrVIII 28477 . T C 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=163;Dels=0.00;FS=2.861;HaplotypeScore=10.7511;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.565;QD=22.07;ReadPosRankSum=2.419;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3597,405,0 chrVIII 28548 . G A 4190.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.67;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4190,456,0 chrVIII 28758 . C T 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=171;Dels=0.00;FS=3.928;HaplotypeScore=15.4122;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.711;QD=21.66;ReadPosRankSum=0.680;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3703,408,0 chrVIII 29709 . T A 2506 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.60;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2539,279,0 chrVIII 29763 . C T 2770 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.34;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2803,306,0 chrVIII 29863 . G A 2029 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=11.9791;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2062,228,0 chrVIII 30051 . C T 1975 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2008,222,0 chrVIII 30151 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.10;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2828,315,0 chrVIII 30386 . C T 3421.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.81;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3421,369,0 chrVIII 30556 . T C 3036 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.69;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3069,345,0 chrVIII 30659 . T C 2111 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2144,243,0 chrVIII 30871 . A T 2491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=4.488;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.133;QD=23.95;ReadPosRankSum=1.699;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2524,276,0 chrVIII 30979 . C T 1944 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1977,219,0 chrVIII 31196 . T G 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.764;QD=23.35;ReadPosRankSum=2.410;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2929,336,0 chrVIII 31821 . A G 4075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=169;Dels=0.00;FS=7.517;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.943;QD=24.11;ReadPosRankSum=2.420;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:4075,444,0 chrVIII 31980 . A G 4251.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.00;FS=3.443;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.766;QD=22.37;ReadPosRankSum=1.714;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4251,483,0 chrVIII 32029 . G A 3887.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.8881;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.36;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3887,435,0 chrVIII 32088 . A C 3351.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.90;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3351,384,0 chrVIII 32115 . A T 3189 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.06;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3222,360,0 chrVIII 32175 . A G 3501.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=20.24;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3501,399,0 chrVIII 32190 . G A 3730.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.81;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3730,411,0 chrVIII 32452 . A G 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=166;Dels=0.00;FS=3.602;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=1.354;QD=22.97;ReadPosRankSum=1.690;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3813,435,0 chrVIII 32578 . C G 4692.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=23.34;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4692,522,0 chrVIII 32614 . C T 4258.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.2573;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=23.66;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4258,474,0 chrVIII 32625 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.82;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3316,366,0 chrVIII 32642 . C A 3159 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.6935;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.30;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3192,342,0 chrVIII 32783 . T G 2687 filter AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2720,315,0 chrVIII 32801 . T G 2255 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=22.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2288,252,0 chrVIII 32836 . G T 673 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=18.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:81:706,81,0 chrVIII 32859 . G A 73.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=9.19;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:106,12,0 chrVIII 32909 . G A 959 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:40:99:992,108,0 chrVIII 33105 . C T 2349 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.47;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2382,261,0 chrVIII 33167 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.06;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2968,324,0 chrVIII 33337 . G A 3544.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.01;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3544,393,0 chrVIII 33397 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.84;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3185,348,0 chrVIII 33844 . G A 4882.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.25;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4882,543,0 chrVIII 33905 . A G 3319.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.49;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3319,393,0 chrVIII 34071 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.1093;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.42;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3159,354,0 chrVIII 34240 . G A 2292 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.76;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2325,255,0 chrVIII 34347 . A G 2144 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.81;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2177,246,0 chrVIII 34368 . A G 2008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.424;DP=90;Dels=0.00;FS=2.981;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-0.999;QD=22.31;ReadPosRankSum=0.944;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2041,209,0 chrVIII 34469 . T G 1715 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=17.86;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1748,195,0 chrVIII 34480 . C T 1852 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=18.34;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1885,210,0 chrVIII 34545 . T G 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=134;Dels=0.00;FS=2.588;HaplotypeScore=7.0642;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=0.534;QD=19.17;ReadPosRankSum=2.947;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:3,129:134:99:2602,297,0 chrVIII 34565 . G C 2820 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.02;FS=0.000;HaplotypeScore=20.2757;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.14;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2853,330,0 chrVIII 34710 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=3.349;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=1.407;QD=20.81;ReadPosRankSum=1.710;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3329,387,0 chrVIII 35149 . C T 2265 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.57;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2298,258,0 chrVIII 35271 . T G 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.517;QD=24.49;ReadPosRankSum=1.702;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2825,318,0 chrVIII 35378 . A G 3314.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.2057;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;QD=23.84;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3314,393,0 chrVIII 35762 . G A 5942.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=0;QD=21.93;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:5942,660,0 chrVIII 35854 . C A 4304.01 filter AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=14.2770;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=10;QD=19.21;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4304,468,0 chrVIII 35975 . A G 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.9678;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;MQRankSum=-0.377;QD=19.50;ReadPosRankSum=1.702;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2275,261,0 chrVIII 36028 . C T 863 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=35.11;MQ0=0;QD=13.92;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,59:62:99:896,102,0 chrVIII 36040 . T C 858 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.23;MQ0=0;QD=15.89;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:891,102,0 chrVIII 36042 . T G 900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=6.690;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.21;MQ0=0;MQRankSum=-0.495;QD=16.07;ReadPosRankSum=1.609;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:933,108,0 chrVIII 36052 . A G 1143 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.97;MQ0=0;QD=16.57;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1176,132,0 chrVIII 36073 . C T 1438 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.51;MQ0=0;QD=17.12;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1471,159,0 chrVIII 36128 . T C 1511 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.1094;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=16.60;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1544,180,0 chrVIII 36243 . G A 881 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=10.49;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,79:84:99:914,102,0 chrVIII 36271 . T C 1415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;MQRankSum=-0.350;QD=14.89;ReadPosRankSum=0.687;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1448,168,0 chrVIII 36306 . C T 1921 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.01;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1954,213,0 chrVIII 36501 . C G 3228.29 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=19.68;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3262,372,0 chrVIII 36667 . G A 3666.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.82;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3666,414,0 chrVIII 37057 . C A 5264.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=21.0676;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.97;SB=-2.991e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5264,591,0 chrVIII 37503 . G A 5908.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=12.0661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.44;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5908,645,0 chrVIII 37675 . A G 7061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=336;Dels=0.00;FS=10.910;HaplotypeScore=15.8649;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-1.182;QD=21.01;ReadPosRankSum=2.967;SB=-3.549e+03 GT:AD:DP:GQ:PL 1/1:3,333:336:99:7061,845,0 chrVIII 37789 . G A 7653.01 PASS AC=2;AF=1.00;AN=2;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=17.3418;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.18;SB=-3.789e+03 GT:AD:DP:GQ:PL 1/1:0,341:345:99:7653,855,0 chrVIII 37876 . T C 7836.01 PASS AC=2;AF=1.00;AN=2;DP=360;Dels=0.00;FS=0.000;HaplotypeScore=11.8265;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=21.77;SB=-4.407e+03 GT:AD:DP:GQ:PL 1/1:0,359:360:99:7836,917,0 chrVIII 37897 . T C 6349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=344;Dels=0.00;FS=10.527;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;MQRankSum=-2.012;QD=18.46;ReadPosRankSum=2.938;SB=-3.677e+03 GT:AD:DP:GQ:PL 1/1:3,339:344:99:6349,770,0 chrVIII 37900 . G A 6464.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;QD=19.12;SB=-3.326e+03 GT:AD:DP:GQ:PL 1/1:0,338:338:99:6464,749,0 chrVIII 37931 . A G 5906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=28.4513;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=0.544;QD=18.99;ReadPosRankSum=1.698;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:1,308:310:99:5906,681,0 chrVIII 37969 . G A 6182.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=13.5348;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=20.89;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,294:296:99:6182,687,0 chrVIII 38056 . A G 5078.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=13.3775;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=-0.969;QD=19.76;ReadPosRankSum=2.392;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:2,255:257:99:5078,591,0 chrVIII 38083 . T C 4338.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=17.71;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,241:245:99:4338,501,0 chrVIII 38092 . G A 4078.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=17.43;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:4078,453,0 chrVIII 38116 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.262;DP=194;Dels=0.00;FS=16.965;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;MQRankSum=-0.553;QD=16.93;ReadPosRankSum=3.388;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:4,190:194:99:3284,381,0 chrVIII 38190 . C T 4717.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.2003;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.57;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4717,525,0 chrVIII 38260 . C T 4172.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.4250;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.07;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4172,462,0 chrVIII 38427 . T C 3801.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=21.97;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3801,432,0 chrVIII 38619 . T C 1310 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=68.2666;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=14.72;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1343,153,0 chrVIII 38742 . A T 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=150;Dels=0.00;FS=3.471;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.477;QD=21.29;ReadPosRankSum=1.616;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3226,354,0 chrVIII 38887 . T C 5910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.972;DP=270;Dels=0.00;FS=7.395;HaplotypeScore=14.4466;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-0.459;QD=21.89;ReadPosRankSum=4.153;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:6,263:270:99:5910,672,0 chrVIII 38923 . T C 6204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.774;DP=283;Dels=0.00;FS=4.868;HaplotypeScore=19.1126;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.300;QD=21.92;ReadPosRankSum=3.768;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:5,278:283:99:6204,720,0 chrVIII 39238 . G C 6019.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=20.1349;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.73;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,272:277:99:6019,687,0 chrVIII 39521 . C G 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=136.9110;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;MQRankSum=1.543;QD=17.33;ReadPosRankSum=0.850;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,164:169:99:2961,351,0 chrVIII 39721 . G A 2458 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=8.5782;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=21.75;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2491,276,0 chrVIII 39746 . C T 2527 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=97.7477;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=21.42;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2560,279,0 chrVIII 39758 . T C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=114.9598;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=0.16;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:6:51,6,0 chrVIII 39974 . C T 2450 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.12;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2483,270,0 chrVIII 40215 . A G 3696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=172;Dels=0.00;FS=4.574;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.665;QD=21.49;ReadPosRankSum=1.712;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3696,420,0 chrVIII 40287 . T C 5409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.696;QD=22.08;ReadPosRankSum=1.704;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,243:245:99:5409,621,0 chrVIII 40664 . T C 3541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.7819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.917;QD=20.71;ReadPosRankSum=1.712;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3541,396,0 chrVIII 41245 . T A 2586 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2619,291,0 chrVIII 41712 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2873,318,0 chrVIII 42147 . G A 3736.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.21;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3736,411,0 chrVIII 42255 . G A 4090.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=20.87;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4090,456,0 chrVIII 42258 . A G 3981.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=20.73;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3981,444,0 chrVIII 42501 . C T 4376.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.2109;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.53;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4376,477,0 chrVIII 42616 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.85;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3266,363,0 chrVIII 42646 . G A 2389 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.11;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2422,264,0 chrVIII 42655 . A G 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.331;QD=19.65;ReadPosRankSum=1.681;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2725,312,0 chrVIII 42709 . C T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.7844;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.34;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3457,384,0 chrVIII 42946 . T C 3422.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.7102;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.37;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3422,393,0 chrVIII 43928 . G T 3642.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.78;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3642,402,0 chrVIII 45778 . G C 1933 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.56;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1966,234,0 chrVIII 46055 . A G 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=149;Dels=0.00;FS=8.549;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.146;QD=20.97;ReadPosRankSum=2.417;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3157,357,0 chrVIII 46330 . T G 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.101;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.792;QD=23.27;ReadPosRankSum=1.195;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:3,147:151:99:3514,383,0 chrVIII 47072 . A G 6893.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=17.5217;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.61;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:0,289:292:99:6893,774,0 chrVIII 47196 . C T 6617.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=23.2221;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.98;SB=-3.698e+03 GT:AD:DP:GQ:PL 1/1:0,285:288:99:6617,726,0 chrVIII 48088 . C T 2207 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.44;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2240,246,0 chrVIII 48187 . G A 8734.01 filter AC=2;AF=1.00;AN=2;DP=396;Dels=0.00;FS=0.000;HaplotypeScore=2.7537;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=22.06;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,396:396:99:8734,984,0 chrVIII 48217 . A C 4595.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.417;DP=383;Dels=0.00;FS=27.880;HaplotypeScore=13.3614;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;MQRankSum=-4.072;QD=12.00;ReadPosRankSum=-6.150;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:53,330:383:99:4595,214,0 chrVIII 48220 . A G 3962.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.788;DP=390;Dels=0.00;FS=27.905;HaplotypeScore=20.2515;MLEAC=1;MLEAF=0.500;MQ=46.01;MQ0=0;MQRankSum=-6.100;QD=10.16;ReadPosRankSum=-4.285;SB=-1.500e+03 GT:AD:DP:GQ:PL 0/1:53,337:390:99:3962,0,138 chrVIII 48229 . A G 206.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.717;DP=379;Dels=0.00;FS=25.884;HaplotypeScore=32.1578;MLEAC=1;MLEAF=0.500;MQ=44.15;MQ0=0;MQRankSum=7.531;QD=0.54;ReadPosRankSum=-1.276;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:334,45:379:99:236,0,3343 chrVIII 48235 . A G 2136.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.105;DP=354;Dels=0.00;FS=15.502;HaplotypeScore=828.8266;MLEAC=1;MLEAF=0.500;MQ=42.76;MQ0=0;MQRankSum=-8.062;QD=6.03;ReadPosRankSum=5.375;SB=-1.369e+03 GT:AD:DP:GQ:PL 0/1:60,294:354:99:2166,0,664 chrVIII 48299 . T C 4788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.370;DP=305;Dels=0.00;FS=5.216;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=-1.211;QD=15.70;ReadPosRankSum=3.072;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:4,300:305:99:4788,552,0 chrVIII 48365 . T G 8160.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=434;Dels=0.00;FS=5.072;HaplotypeScore=15.7618;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-1.628;QD=18.80;ReadPosRankSum=0.543;SB=-3.215e+03 GT:AD:DP:GQ:PL 1/1:1,433:434:99:8160,962,0 chrVIII 48551 . A G 4497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=1.425;QD=20.63;ReadPosRankSum=2.348;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4497,510,0 chrVIII 48651 . T C 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=199;Dels=0.00;FS=9.166;HaplotypeScore=15.1282;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.765;QD=20.49;ReadPosRankSum=3.415;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:4,191:199:99:4077,474,0 chrVIII 48939 . T C 4670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.430;DP=249;Dels=0.00;FS=8.835;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=-1.044;QD=18.76;ReadPosRankSum=2.321;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:2,246:248:99:4670,519,0 chrVIII 48948 . C T 4891.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.11;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:4891,558,0 chrVIII 49098 . A G 5174.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=17.8053;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.69;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,224:228:99:5174,597,0 chrVIII 49196 . T C 8666.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.184;DP=383;Dels=0.00;FS=2.365;HaplotypeScore=30.1826;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;MQRankSum=-1.441;QD=22.63;ReadPosRankSum=3.421;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:4,378:383:99:8666,1007,0 chrVIII 49368 . C T 490.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.067;DP=930;Dels=0.00;FS=68.839;HaplotypeScore=17.5576;MLEAC=1;MLEAF=0.500;MQ=41.84;MQ0=0;MQRankSum=-13.022;QD=0.53;ReadPosRankSum=-1.854;SB=-2.967e+03 GT:AD:DP:GQ:PL 0/1:569,359:930:99:520,0,7609 chrVIII 49374 . T C 731.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.708;DP=929;Dels=0.00;FS=54.444;HaplotypeScore=36.1798;MLEAC=1;MLEAF=0.500;MQ=41.03;MQ0=0;MQRankSum=-9.896;QD=0.79;ReadPosRankSum=1.948;SB=-3.564e+03 GT:AD:DP:GQ:PL 0/1:522,402:929:99:761,0,5982 chrVIII 49378 . T A 826.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.934;DP=947;Dels=0.00;FS=56.756;HaplotypeScore=43.9863;MLEAC=1;MLEAF=0.500;MQ=41.32;MQ0=0;MQRankSum=-7.472;QD=0.87;ReadPosRankSum=2.636;SB=-4.070e+03 GT:AD:DP:GQ:PL 0/1:501,444:947:99:856,0,6261 chrVIII 49395 . G C 2764.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.415;DP=975;Dels=0.00;FS=68.775;HaplotypeScore=48.8885;MLEAC=1;MLEAF=0.500;MQ=42.07;MQ0=0;MQRankSum=-10.534;QD=2.83;ReadPosRankSum=-8.497;SB=-1.479e+03 GT:AD:DP:GQ:PL 0/1:618,351:975:99:2794,0,3520 chrVIII 49398 . C T 1052.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.825;DP=861;Dels=0.00;FS=73.350;HaplotypeScore=51.1451;MLEAC=1;MLEAF=0.500;MQ=44.29;MQ0=0;MQRankSum=-4.444;QD=1.22;ReadPosRankSum=0.171;SB=-3.170e+02 GT:AD:DP:GQ:PL 0/1:659,201:861:99:1082,0,4585 chrVIII 49399 . G A 935.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.096;DP=857;Dels=0.00;FS=60.109;HaplotypeScore=49.9590;MLEAC=1;MLEAF=0.500;MQ=44.28;MQ0=0;MQRankSum=-5.248;QD=1.09;ReadPosRankSum=0.318;SB=-3.770e+02 GT:AD:DP:GQ:PL 0/1:661,190:857:99:965,0,4700 chrVIII 49400 . T C 907.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.315;DP=857;Dels=0.00;FS=47.544;HaplotypeScore=49.9590;MLEAC=1;MLEAF=0.500;MQ=44.28;MQ0=0;MQRankSum=-8.268;QD=1.06;ReadPosRankSum=0.654;SB=-3.490e+02 GT:AD:DP:GQ:PL 0/1:676,181:857:99:937,0,5254 chrVIII 49404 . T C 434.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.438;DP=869;Dels=0.00;FS=26.050;HaplotypeScore=55.2320;MLEAC=1;MLEAF=0.500;MQ=44.30;MQ0=0;MQRankSum=-9.483;QD=0.50;ReadPosRankSum=1.001;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/1:710,155:869:99:464,0,6217 chrVIII 49405 . G A 539.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=14.354;DP=876;Dels=0.00;FS=24.609;HaplotypeScore=50.5000;MLEAC=1;MLEAF=0.500;MQ=44.41;MQ0=0;MQRankSum=-9.123;QD=0.62;ReadPosRankSum=-0.202;SB=-3.330e+02 GT:AD:DP:GQ:PL 0/1:713,156:875:99:569,0,5853 chrVIII 49406 . T C 497.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.694;DP=881;Dels=0.00;FS=24.628;HaplotypeScore=70.3636;MLEAC=1;MLEAF=0.500;MQ=44.48;MQ0=0;MQRankSum=-10.079;QD=0.56;ReadPosRankSum=-0.911;SB=-3.050e+02 GT:AD:DP:GQ:PL 0/1:724,156:880:99:527,0,6429 chrVIII 49413 . A G 263.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-14.497;DP=934;Dels=0.01;FS=29.722;HaplotypeScore=114.8757;MLEAC=1;MLEAF=0.500;MQ=45.85;MQ0=0;MQRankSum=-10.279;QD=0.28;ReadPosRankSum=-7.702;SB=-1.710e+02 GT:AD:DP:GQ:PL 0/1:767,155:925:99:293,0,7657 chrVIII 49416 . A G 147.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.606;DP=947;Dels=0.01;FS=31.006;HaplotypeScore=107.6769;MLEAC=1;MLEAF=0.500;MQ=46.64;MQ0=0;MQRankSum=-11.768;QD=0.16;ReadPosRankSum=-10.112;SB=-4.601e+01 GT:AD:DP:GQ:PL 0/1:783,155:938:99:177,0,7924 chrVIII 49419 . A T 95.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;DP=945;Dels=0.00;FS=42.465;HaplotypeScore=102.2403;MLEAC=1;MLEAF=0.500;MQ=47.38;MQ0=0;MQRankSum=-11.336;QD=0.10;ReadPosRankSum=-11.928;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:795,150:945:99:125,0,8351 chrVIII 49510 . C T 9049.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=744;Dels=0.02;FS=2.591;HaplotypeScore=29.8053;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;MQRankSum=0.801;QD=12.16;ReadPosRankSum=0.743;SB=-6.222e+03 GT:AD:DP:GQ:PL 1/1:2,722:726:99:9049,1008,0 chrVIII 49626 . T C 9526.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=532;Dels=0.00;FS=5.016;HaplotypeScore=23.9147;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=0.621;QD=17.91;ReadPosRankSum=1.726;SB=-4.219e+03 GT:AD:DP:GQ:PL 1/1:1,529:532:99:9526,1104,0 chrVIII 49719 . C T 6855.01 PASS AC=2;AF=1.00;AN=2;DP=339;Dels=0.00;FS=0.000;HaplotypeScore=23.3585;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.22;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,338:339:99:6855,745,0 chrVIII 49817 . A C 5695.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.49;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,260:265:99:5695,651,0 chrVIII 49887 . T G 3494.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.20;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3494,417,0 chrVIII 49899 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=4.284;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=-0.186;QD=18.03;ReadPosRankSum=1.713;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3243,387,0 chrVIII 49977 . G A 4140.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.0272;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.90;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4140,444,0 chrVIII 50022 . T C 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=170;Dels=0.00;FS=4.044;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.672;QD=19.38;ReadPosRankSum=1.671;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3294,393,0 chrVIII 50050 . A G 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=169;Dels=0.00;FS=5.584;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.084;QD=20.62;ReadPosRankSum=2.958;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:3,165:169:99:3485,411,0 chrVIII 50268 . C T 5376.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=4.8881;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.08;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:5376,594,0 chrVIII 50287 . T G 5606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.690;DP=274;Dels=0.00;FS=7.588;HaplotypeScore=11.0329;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-0.373;QD=20.46;ReadPosRankSum=3.781;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:5,267:274:99:5606,642,0 chrVIII 50321 . G A 6162.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.10;SB=-3.455e+03 GT:AD:DP:GQ:PL 1/1:0,291:292:99:6162,675,0 chrVIII 50351 . T C 5414.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=17.9572;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=19.83;SB=-3.474e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:5414,621,0 chrVIII 50566 . C G 4574.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.0791;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.89;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4574,519,0 chrVIII 50602 . A G 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=171;Dels=0.00;FS=2.662;HaplotypeScore=12.7461;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.223;QD=21.05;ReadPosRankSum=0.266;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3600,414,0 chrVIII 50683 . G A 4740.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.15;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4740,525,0 chrVIII 50752 . T C 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=177;Dels=0.00;FS=3.011;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-1.425;QD=19.54;ReadPosRankSum=2.422;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:2,173:177:99:3458,396,0 chrVIII 50759 . C T 3165 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=19.42;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3198,360,0 chrVIII 50841 . T G 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=4.064;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.613;QD=20.78;ReadPosRankSum=1.705;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2735,312,0 chrVIII 51012 . C T 2497 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=18.23;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2530,285,0 chrVIII 51089 . G A 3950.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.3342;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=23.65;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3950,438,0 chrVIII 51217 . A G 4869.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=21.7019;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.17;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4869,558,0 chrVIII 51309 . T G 7851.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.965;DP=379;Dels=0.00;FS=5.291;HaplotypeScore=10.3661;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-1.019;QD=20.72;ReadPosRankSum=2.875;SB=-3.639e+03 GT:AD:DP:GQ:PL 1/1:3,374:379:99:7851,932,0 chrVIII 51314 . C A 8176.01 filter AC=2;AF=1.00;AN=2;DP=374;Dels=0.00;FS=0.000;HaplotypeScore=8.1642;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.86;SB=-3.827e+03 GT:AD:DP:GQ:PL 1/1:0,372:374:99:8176,900,0 chrVIII 51344 . C T 6320.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=18.2064;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=18.87;SB=-3.749e+03 GT:AD:DP:GQ:PL 1/1:0,331:335:99:6320,708,0 chrVIII 51378 . A T 4846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.739;DP=267;Dels=0.00;FS=18.898;HaplotypeScore=20.9321;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.576;QD=18.15;ReadPosRankSum=3.739;SB=-2.821e+03 GT:AD:DP:GQ:PL 1/1:5,262:267:99:4846,531,0 chrVIII 51441 . T C 6123.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=26.7068;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.28;SB=-3.840e+03 GT:AD:DP:GQ:PL 1/1:0,334:335:99:6123,693,0 chrVIII 51470 . G T 6481.01 filter AC=2;AF=1.00;AN=2;DP=394;Dels=0.00;FS=0.000;HaplotypeScore=26.0103;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=16.45;SB=-3.521e+03 GT:AD:DP:GQ:PL 1/1:0,391:394:99:6481,714,0 chrVIII 51686 . G A 3919.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.0215;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.63;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3919,429,0 chrVIII 51773 . T C 2904 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.6436;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.04;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2937,339,0 chrVIII 51856 . G T 2841 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=21.20;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2874,318,0 chrVIII 51891 . T A 2979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.2215;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-1.339;QD=21.13;ReadPosRankSum=1.658;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3012,342,0 chrVIII 51937 . C G 4002.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.01;FS=0.000;HaplotypeScore=15.2011;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.48;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4002,447,0 chrVIII 52183 . G A 7017.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=21.39;SB=-3.780e+03 GT:AD:DP:GQ:PL 1/1:0,328:328:99:7017,780,0 chrVIII 52666 . G A 4978.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=18.6201;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.91;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:4978,552,0 chrVIII 52712 . C T 5229.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=18.2512;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.06;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5229,576,0 chrVIII 52980 . T C 3013 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=22.15;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3046,342,0 chrVIII 52993 . G A 2856 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=20.85;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2889,309,0 chrVIII 52999 . C T 2657 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=20.60;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2690,297,0 chrVIII 53006 . T A 2634 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.42;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2667,294,0 chrVIII 53097 . G T 2212 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.7986;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.07;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2245,249,0 chrVIII 53107 . A G 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=96;Dels=0.00;FS=2.829;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.552;QD=21.14;ReadPosRankSum=1.808;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2062,234,0 chrVIII 53214 . T C 4318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.889;DP=194;Dels=0.00;FS=4.701;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=0.454;QD=22.26;ReadPosRankSum=4.162;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:6,188:194:99:4318,489,0 chrVIII 53336 . T C 5239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.170;QD=23.60;ReadPosRankSum=1.716;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:5239,600,0 chrVIII 53413 . A C 7158.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=13.1836;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.80;SB=-3.612e+03 GT:AD:DP:GQ:PL 1/1:0,313:314:99:7158,836,0 chrVIII 53579 . T C 6106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=286;Dels=0.00;FS=4.306;HaplotypeScore=22.2408;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.520;QD=21.35;ReadPosRankSum=1.708;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:1,282:286:99:6106,699,0 chrVIII 53843 . T C 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=151;Dels=0.00;FS=4.572;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.523;QD=19.17;ReadPosRankSum=1.709;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:2928,348,0 chrVIII 53879 . A T 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=174;Dels=0.00;FS=2.562;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.653;QD=19.69;ReadPosRankSum=2.935;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3426,384,0 chrVIII 53882 . C T 3407.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=20.28;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3407,372,0 chrVIII 54035 . G A 2540 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.32;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2573,288,0 chrVIII 54138 . G T 2431 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.37;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2464,273,0 chrVIII 54245 . A G 2870 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.26;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2903,345,0 chrVIII 54264 . G A 2995 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.70;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3028,327,0 chrVIII 54302 . C T 2721 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.09;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2754,303,0 chrVIII 54496 . G A 4993.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.1001;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.59;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4993,552,0 chrVIII 55195 . C T 7477.01 PASS AC=2;AF=1.00;AN=2;DP=350;Dels=0.00;FS=0.000;HaplotypeScore=26.8511;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.36;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,350:350:99:7477,816,0 chrVIII 55333 . A G 4597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=243;Dels=0.00;FS=3.211;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-0.706;QD=18.92;ReadPosRankSum=1.418;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:4597,525,0 chrVIII 55348 . A G 4341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=267;Dels=0.00;FS=3.647;HaplotypeScore=15.2983;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=1.102;QD=16.26;ReadPosRankSum=1.706;SB=-2.826e+03 GT:AD:DP:GQ:PL 1/1:1,263:267:99:4341,518,0 chrVIII 55483 . T A 5525.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=4.6878;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=19.73;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,280:280:99:5525,618,0 chrVIII 55489 . G A 5045.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.55;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,270:272:99:5045,585,0 chrVIII 55671 . A T 6299.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.91;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:6299,705,0 chrVIII 55975 . T C 4438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=-0.087;QD=22.30;ReadPosRankSum=1.715;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4438,522,0 chrVIII 56197 . C T 3022 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=23.2919;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=17.88;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3055,330,0 chrVIII 56225 . T C 2289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=128;Dels=0.00;FS=3.809;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;MQRankSum=1.621;QD=17.88;ReadPosRankSum=1.704;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,124:128:99:2322,279,0 chrVIII 56250 . C T 2591 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=20.90;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2624,294,0 chrVIII 56322 . G A 3948.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=23.22;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3948,423,0 chrVIII 56364 . T G 2737 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.27;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2770,321,0 chrVIII 56423 . C T 966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=6.103;DP=154;Dels=0.00;FS=15.119;HaplotypeScore=22.0990;MLEAC=2;MLEAF=1.00;MQ=32.63;MQ0=1;MQRankSum=-1.003;QD=6.27;ReadPosRankSum=8.257;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:75,79:154:29:999,29,0 chrVIII 56538 . T A 2252 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=23.71;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2285,249,0 chrVIII 56604 . G A 2753 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.5268;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=22.20;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2786,303,0 chrVIII 58390 . A G 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=186;Dels=0.00;FS=5.994;HaplotypeScore=137.4005;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.389;QD=22.22;ReadPosRankSum=2.962;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:4133,468,0 chrVIII 58676 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=18.94;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:3826,435,0 chrVIII 58677 . A G 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=0.708;QD=19.12;ReadPosRankSum=1.647;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:3881,432,0 chrVIII 59936 . G C 3964.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=15.0351;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.82;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3964,453,0 chrVIII 59990 . T C 4722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.426;QD=21.96;ReadPosRankSum=1.716;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4722,543,0 chrVIII 60508 . A G 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=134;Dels=0.00;FS=3.109;HaplotypeScore=14.5270;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.404;QD=21.99;ReadPosRankSum=1.706;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2979,333,0 chrVIII 60764 . T C 2756 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.97;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2789,315,0 chrVIII 60785 . C T 2413 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=19.00;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2446,270,0 chrVIII 61049 . C T 3601.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.69;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3601,399,0 chrVIII 61209 . C T 2759 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2792,309,0 chrVIII 61764 . G A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3833,432,0 chrVIII 62455 . G A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.75;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3662,399,0 chrVIII 62507 . C T 2516 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=17.0965;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.97;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,122:126:99:2549,285,0 chrVIII 62865 . T C 1056 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=13.89;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1089,126,0 chrVIII 63396 . G A 4188.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.28;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4188,465,0 chrVIII 63523 . A T 3655.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3655,405,0 chrVIII 63582 . T C 4460.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.23;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4460,501,0 chrVIII 64407 . C T 1378 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1411,156,0 chrVIII 64748 . A G 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=122;Dels=0.00;FS=3.274;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.266;QD=21.41;ReadPosRankSum=1.674;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,118:122:99:2645,315,0 chrVIII 65200 . A G 5022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=228;Dels=0.00;FS=3.764;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.272;QD=22.03;ReadPosRankSum=1.671;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:1,225:228:99:5022,590,0 chrVIII 65380 . A G 4186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.763;QD=21.69;ReadPosRankSum=1.714;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4186,474,0 chrVIII 65566 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.52;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3340,381,0 chrVIII 66125 . T C 3337.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.86;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3337,375,0 chrVIII 66280 . C T 5829.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5829,639,0 chrVIII 67629 . G T 2603 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=16.17;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,155:161:99:2636,297,0 chrVIII 68199 . T C 3127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=147;Dels=0.00;FS=7.202;HaplotypeScore=13.4886;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.254;QD=21.27;ReadPosRankSum=2.399;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3160,357,0 chrVIII 68235 . G A 3118 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.36;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3151,342,0 chrVIII 68311 . G A 2552 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.4240;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.09;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2585,282,0 chrVIII 68352 . T C 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.287;QD=21.76;ReadPosRankSum=1.683;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3080,345,0 chrVIII 68508 . A C 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=4.008;HaplotypeScore=6.9603;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.654;QD=21.02;ReadPosRankSum=1.686;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3207,369,0 chrVIII 68532 . A G 3555.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.42;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3555,408,0 chrVIII 69180 . G A 5714.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5714,627,0 chrVIII 69575 . C T 3084 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.4071;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.84;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3117,339,0 chrVIII 70542 . A G 5245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=263;Dels=0.00;FS=3.372;HaplotypeScore=5.0517;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-1.021;QD=19.94;ReadPosRankSum=1.719;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:5245,588,0 chrVIII 70548 . T C 4935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.045;DP=261;Dels=0.00;FS=14.523;HaplotypeScore=8.1440;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-1.216;QD=18.91;ReadPosRankSum=4.078;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:6,253:261:99:4935,555,0 chrVIII 71247 . T G 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=167;Dels=0.00;FS=3.966;HaplotypeScore=14.3150;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.193;QD=22.64;ReadPosRankSum=1.711;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3781,432,0 chrVIII 71457 . T C 4989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.1508;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.609;QD=22.27;ReadPosRankSum=1.670;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,221:224:99:4989,582,0 chrVIII 71947 . G T 1389 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=14.47;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1422,156,0 chrVIII 71994 . A G 1812 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.91;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1845,213,0 chrVIII 72011 . G A 1915 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.76;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1948,216,0 chrVIII 72058 . T C 2209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.706;QD=20.45;ReadPosRankSum=1.604;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2242,255,0 chrVIII 72171 . G A 2620 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.98;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2653,291,0 chrVIII 72247 . C T 3078 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.68;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3111,342,0 chrVIII 72378 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.20;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3308,360,0 chrVIII 72400 . A G 3154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=145;Dels=0.00;FS=6.946;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=1.801;QD=21.75;ReadPosRankSum=2.381;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3187,378,0 chrVIII 72478 . T C 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=1.090;QD=20.97;ReadPosRankSum=1.704;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2654,303,0 chrVIII 72487 . A G 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=126;Dels=0.00;FS=3.585;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=0.444;QD=19.40;ReadPosRankSum=1.646;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,120:126:99:2477,291,0 chrVIII 72547 . G A 3194 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=22.49;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3227,357,0 chrVIII 72569 . T C 3760.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.38;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3760,417,0 chrVIII 72635 . G T 3614.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.3291;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.77;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3614,393,0 chrVIII 72697 . C G 2848 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.49;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2881,327,0 chrVIII 72739 . A G 3033 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=21.82;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3066,354,0 chrVIII 72757 . T A 2758 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=19.70;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2791,309,0 chrVIII 72759 . A G 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=-1.020;QD=18.39;ReadPosRankSum=1.658;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2645,306,0 chrVIII 72808 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=15.5994;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=16.62;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2625,291,0 chrVIII 72925 . T C 3363.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.8993;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.72;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3363,399,0 chrVIII 73129 . T C 5068.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.5767;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.13;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5068,573,0 chrVIII 73264 . A G 4425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=210;Dels=0.00;FS=2.552;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.153;QD=21.07;ReadPosRankSum=2.919;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:3,207:210:99:4425,495,0 chrVIII 73285 . C T 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.169;QD=21.92;ReadPosRankSum=0.401;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3617,402,0 chrVIII 73516 . C T 3144 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.82;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3177,354,0 chrVIII 73687 . C A 4956.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=24.18;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4956,558,0 chrVIII 73735 . T C 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.8520;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.854;QD=19.13;ReadPosRankSum=1.683;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4094,480,0 chrVIII 73741 . G A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.4481;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.85;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4109,450,0 chrVIII 73915 . G T 4556.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=20.62;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4556,504,0 chrVIII 73929 . A G 4358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.179;DP=225;Dels=0.00;FS=8.873;HaplotypeScore=9.0454;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-0.997;QD=19.37;ReadPosRankSum=3.351;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:4,219:225:99:4358,492,0 chrVIII 74059 . T G 2411 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.3298;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.63;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2444,294,0 chrVIII 74089 . A G 1799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.723;DP=136;Dels=0.00;FS=4.894;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.076;QD=13.23;ReadPosRankSum=3.198;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:5,131:136:99:1832,210,0 chrVIII 74101 . G A 1665 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=12.71;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1698,189,0 chrVIII 74246 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=20.68;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3073,333,0 chrVIII 74267 . G A 2949 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.8379;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.06;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2982,330,0 chrVIII 74339 . C G 4496.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=23.91;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4496,510,0 chrVIII 74400 . G A 3072 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;QD=20.34;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3105,351,0 chrVIII 74409 . A T 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=150;Dels=0.00;FS=3.699;HaplotypeScore=3.4839;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;MQRankSum=-0.670;QD=19.18;ReadPosRankSum=1.709;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2910,330,0 chrVIII 74435 . T C 2888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=161;Dels=0.00;FS=5.917;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.67;MQ0=0;MQRankSum=-2.526;QD=17.94;ReadPosRankSum=2.943;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:3,156:161:99:2921,342,0 chrVIII 74445 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;QD=19.18;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3160,354,0 chrVIII 74477 . C A 3824.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=19.71;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3824,429,0 chrVIII 74519 . G A 4724.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=22.39;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4724,516,0 chrVIII 74573 . C T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=18.84;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3354,381,0 chrVIII 74611 . T C 2194 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.03;MQ0=0;QD=15.56;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2227,264,0 chrVIII 74612 . C T 2224 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=15.89;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2257,267,0 chrVIII 74618 . A G 1943 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.54;MQ0=0;QD=13.04;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:1976,231,0 chrVIII 74631 . C G 1851 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=36.40;MQ0=0;QD=12.02;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:1884,222,0 chrVIII 74649 . A G 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=38.19;MQ0=0;MQRankSum=1.253;QD=13.31;ReadPosRankSum=1.710;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:2163,252,0 chrVIII 74714 . T C 2274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=3.100;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=39.77;MQ0=0;MQRankSum=-0.035;QD=15.26;ReadPosRankSum=1.709;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:2307,258,0 chrVIII 74727 . C T 1801 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.336;DP=143;Dels=0.00;FS=3.537;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;MQRankSum=-0.198;QD=12.59;ReadPosRankSum=1.658;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,139:143:99:1834,204,0 chrVIII 74730 . T C 1680 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.065;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=36.31;MQ0=0;MQRankSum=-0.564;QD=12.63;ReadPosRankSum=2.265;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:1713,207,0 chrVIII 74734 . C G 1687 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;QD=12.68;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1720,201,0 chrVIII 74755 . A G 1837 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=13.31;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1870,213,0 chrVIII 74776 . G C 2272 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;QD=15.25;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2305,264,0 chrVIII 74806 . T C 2724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=150;Dels=0.00;FS=3.011;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;MQRankSum=-0.664;QD=18.16;ReadPosRankSum=2.417;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:2757,321,0 chrVIII 74846 . G A 3003 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=21.45;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3036,333,0 chrVIII 74924 . A T 3041 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.1536;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=22.86;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3074,333,0 chrVIII 74975 . G A 1825 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.6250;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=14.48;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:1858,204,0 chrVIII 75030 . G T 2355 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.01;FS=0.000;HaplotypeScore=16.0355;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.15;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2388,258,0 chrVIII 75336 . T A 2729 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.73;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2762,315,0 chrVIII 75492 . C T 3906.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.5331;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.41;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3906,429,0 chrVIII 75639 . T C 3667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=169;Dels=0.00;FS=8.897;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.446;QD=21.70;ReadPosRankSum=2.421;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3667,423,0 chrVIII 76093 . C A 679 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=13.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:78:712,78,0 chrVIII 76280 . G A 2621 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=24.73;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2654,291,0 chrVIII 76524 . C T 2155 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.55;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2188,237,0 chrVIII 76550 . C T 2289 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.80;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2322,258,0 chrVIII 76580 . T C 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.369;QD=20.98;ReadPosRankSum=1.704;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2635,294,0 chrVIII 76673 . C T 2301 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.31;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2334,255,0 chrVIII 76691 . C T 2255 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.27;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2288,258,0 chrVIII 76739 . A G 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=3.718;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.843;QD=20.83;ReadPosRankSum=1.701;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2387,276,0 chrVIII 76976 . C A 3937.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.57;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3937,435,0 chrVIII 77201 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.5802;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3268,351,0 chrVIII 77306 . A G 2788 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.35;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2821,330,0 chrVIII 78803 . T G 1775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.265;QD=20.64;ReadPosRankSum=1.610;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1808,207,0 chrVIII 79037 . A G 2658 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.11;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2691,303,0 chrVIII 79208 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2915,324,0 chrVIII 79756 . T A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.7138;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.36;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3611,390,0 chrVIII 79894 . T A 3599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=3.419;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.021;QD=23.07;ReadPosRankSum=1.688;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3599,396,0 chrVIII 79923 . C A 3615.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.78;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3615,396,0 chrVIII 80077 . A G 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.197;QD=21.88;ReadPosRankSum=1.707;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3030,345,0 chrVIII 80210 . G C 3161 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.95;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3194,366,0 chrVIII 80249 . G T 3039 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.74;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3072,333,0 chrVIII 80622 . A T 1837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=10.7868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.577;QD=17.33;ReadPosRankSum=1.699;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1870,204,0 chrVIII 81406 . G A 4324.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4324,471,0 chrVIII 81685 . A G 3062 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.72;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3095,354,0 chrVIII 81881 . G A 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.266;DP=115;Dels=0.02;FS=90.213;HaplotypeScore=19.5922;MLEAC=1;MLEAF=0.500;MQ=49.07;MQ0=0;MQRankSum=-2.644;QD=0.37;ReadPosRankSum=-0.675;SB=0.079 GT:AD:DP:GQ:PL 0/1:60,51:113:73:73,0,338 chrVIII 82048 . G A 2800 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.7821;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=22.22;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2833,321,0 chrVIII 82351 . A C 3110 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.54;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3143,372,0 chrVIII 82486 . G C 3482.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=16.3384;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.98;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3482,396,0 chrVIII 82588 . G A 3896.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.05;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3896,435,0 chrVIII 82798 . A G 6180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=286;Dels=0.00;FS=7.786;HaplotypeScore=14.4552;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.965;QD=21.61;ReadPosRankSum=2.415;SB=-2.909e+03 GT:AD:DP:GQ:PL 1/1:2,284:286:99:6180,711,0 chrVIII 83065 . C T 4020.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.0451;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.58;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4020,447,0 chrVIII 83128 . T C 2294 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=15.5705;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.28;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2327,273,0 chrVIII 83441 . C T 3578.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.85;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3578,387,0 chrVIII 83696 . G A 2685 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2718,294,0 chrVIII 84663 . C G 1665 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;QD=16.65;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1698,198,0 chrVIII 84686 . A G 1271 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;QD=15.50;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1304,153,0 chrVIII 84687 . T C 1369 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;QD=16.49;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1402,162,0 chrVIII 84699 . A G 1329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=4.053;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=41.56;MQ0=0;MQRankSum=-1.109;QD=14.93;ReadPosRankSum=1.693;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1362,156,0 chrVIII 84708 . G A 1359 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.0454;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=13.46;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1392,156,0 chrVIII 84777 . A C 3791.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.54;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3791,438,0 chrVIII 84820 . A G 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=145;Dels=0.00;FS=4.199;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-1.708;QD=20.39;ReadPosRankSum=1.659;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,141:145:99:2990,336,0 chrVIII 84829 . T C 2488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=136;Dels=0.00;FS=2.744;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=-1.094;QD=18.29;ReadPosRankSum=2.395;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2521,291,0 chrVIII 84887 . T C 2694 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=20.26;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2727,312,0 chrVIII 84920 . C T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=21.72;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3301,366,0 chrVIII 84969 . C T 3768.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5084;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.70;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3768,405,0 chrVIII 85001 . T C 3851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=178;Dels=0.00;FS=7.922;HaplotypeScore=15.1682;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=0.398;QD=21.63;ReadPosRankSum=2.394;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:3851,438,0 chrVIII 85085 . C T 2349 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.79;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2382,267,0 chrVIII 85109 . C T 2086 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.07;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2119,234,0 chrVIII 85132 . C T 2017 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.92;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2050,228,0 chrVIII 85155 . G T 2202 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=21.80;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2235,243,0 chrVIII 85226 . G C 1948 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=21.41;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1981,228,0 chrVIII 85374 . A G 540 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=38.69;MQ0=0;QD=14.59;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:66:573,66,0 chrVIII 85389 . G T 431 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=17.24;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:51:464,51,0 chrVIII 91572 . A T 130.13 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.30;MQ0=13;QD=6.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,11:19:18:163,18,0 chrVIII 91768 . G T 45.97 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=35.21;MQ0=0;QD=3.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:13:9:78,9,0 chrVIII 91771 . G T 42.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;QD=10.74;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:75,9,0 chrVIII 91812 . A T 49.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.45;MQ0=2;MQRankSum=0.731;QD=7.14;ReadPosRankSum=0.731;SB=2.08 GT:AD:DP:GQ:PL 1/1:3,4:7:9:82,9,0 chrVIII 91841 . T A 49.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.19;MQ0=11;MQRankSum=0.000;QD=2.94;ReadPosRankSum=0.720;SB=2.08 GT:AD:DP:GQ:PL 1/1:13,4:17:9:82,9,0 chrVIII 91842 . A G 47.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.26;MQ0=13;MQRankSum=0.731;QD=2.52;ReadPosRankSum=0.731;SB=2.08 GT:AD:DP:GQ:PL 1/1:14,4:19:9:80,9,0 chrVIII 92100 . T G 11.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.72;MQ0=2;MQRankSum=0.736;QD=1.90;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:1,4:6:14:41,0,14 chrVIII 92142 . G A 240 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.60;MQ0=0;QD=5.11;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:0,44:47:30:273,30,0 chrVIII 92232 . C T 2526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;MQRankSum=0.104;QD=21.59;ReadPosRankSum=-0.577;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2559,282,0 chrVIII 92264 . T C 1539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;MQRankSum=-0.938;QD=15.24;ReadPosRankSum=2.401;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1572,180,0 chrVIII 92289 . G A 1309 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.61;MQ0=0;QD=12.71;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1342,156,0 chrVIII 92299 . G A 1194 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.08;MQ0=0;QD=11.48;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1227,141,0 chrVIII 92307 . A G 1289 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=7.243;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.99;MQ0=0;MQRankSum=-1.340;QD=12.16;ReadPosRankSum=1.699;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1322,153,0 chrVIII 92312 . A G 1276 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.70;MQ0=0;QD=12.39;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1309,153,0 chrVIII 92313 . A G 1279 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.67;MQ0=0;QD=12.30;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1312,153,0 chrVIII 92406 . T C 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=4.363;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;MQRankSum=-0.342;QD=23.93;ReadPosRankSum=1.683;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3398,387,0 chrVIII 92459 . A G 3005 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=24.04;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3038,342,0 chrVIII 92485 . C G 2953 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=22.37;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:2986,336,0 chrVIII 92522 . A T 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=146;Dels=0.01;FS=2.908;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;MQRankSum=-0.559;QD=21.58;ReadPosRankSum=2.346;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3183,351,0 chrVIII 92573 . A G 1465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.465;DP=116;Dels=0.00;FS=11.003;HaplotypeScore=60.9477;MLEAC=2;MLEAF=1.00;MQ=41.54;MQ0=0;MQRankSum=-0.237;QD=12.63;ReadPosRankSum=2.939;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:4,112:116:99:1498,174,0 chrVIII 92590 . G T 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.847;DP=116;Dels=0.01;FS=17.405;HaplotypeScore=72.0818;MLEAC=1;MLEAF=0.500;MQ=41.02;MQ0=0;MQRankSum=0.795;QD=0.25;ReadPosRankSum=-5.566;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,23:115:59:59,0,589 chrVIII 92598 . T C 624 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=39.53;MQ0=0;QD=6.86;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:78:657,78,0 chrVIII 92608 . G A 1007 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=0;QD=10.07;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1040,114,0 chrVIII 92658 . A G 2238 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=19.46;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2271,261,0 chrVIII 92677 . T A 2460 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=19.52;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2493,273,0 chrVIII 92692 . T G 2250 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5866;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=18.60;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2283,258,0 chrVIII 92735 . T C 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=140;Dels=0.00;FS=2.869;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;MQRankSum=0.061;QD=19.31;ReadPosRankSum=2.415;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2736,315,0 chrVIII 92759 . A C 3097 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;QD=19.00;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3130,360,0 chrVIII 92864 . C T 4612.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=39.84;MQ0=0;QD=21.96;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4612,516,0 chrVIII 92927 . G T 4338.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=35.66;MQ0=0;QD=22.13;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4338,500,0 chrVIII 92961 . C G 3983.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.8986;MLEAC=2;MLEAF=1.00;MQ=32.99;MQ0=0;QD=21.53;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3983,479,0 chrVIII 92971 . T C 3578.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.1099;MLEAC=2;MLEAF=1.00;MQ=33.02;MQ0=0;QD=20.45;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3578,416,0 chrVIII 92978 . C G 3191 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=32.98;MQ0=0;QD=19.82;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3224,389,0 chrVIII 93014 . G C 2383 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8881;MLEAC=2;MLEAF=1.00;MQ=31.48;MQ0=0;QD=17.02;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2416,299,0 chrVIII 93026 . T C 2195 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.9827;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=16.76;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2228,258,0 chrVIII 93033 . C T 2065 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=16.52;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2098,231,0 chrVIII 93035 . G A 1954 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=15.63;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1987,222,0 chrVIII 93055 . A G 1796 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;MQRankSum=-1.545;QD=14.37;ReadPosRankSum=2.410;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:2,123:125:99:1829,213,0 chrVIII 93056 . A G 1746 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;MQRankSum=1.704;QD=14.20;ReadPosRankSum=-0.352;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:1779,204,0 chrVIII 93062 . A G 1692 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;MQRankSum=-1.639;QD=12.92;ReadPosRankSum=2.947;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:3,128:131:99:1725,204,0 chrVIII 93068 . A G 1623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.357;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;MQRankSum=-0.496;QD=13.30;ReadPosRankSum=3.386;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:4,118:122:99:1656,192,0 chrVIII 93086 . C T 1495 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=0;QD=13.35;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1528,174,0 chrVIII 93088 . T C 1357 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=0;QD=12.12;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1390,162,0 chrVIII 93095 . A G 1229 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=0;MQRankSum=-0.484;QD=11.07;ReadPosRankSum=1.701;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1262,150,0 chrVIII 93101 . T C 1251 filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=10.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1284,150,0 chrVIII 93125 . C T 1304 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.03;MQ0=0;QD=13.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1337,159,0 chrVIII 93128 . G C 1200 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=0;QD=12.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1233,150,0 chrVIII 93136 . C T 839 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=0;QD=11.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:872,105,0 chrVIII 93137 . C T 834 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=0;QD=11.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:867,105,0 chrVIII 93140 . C T 821 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=0;QD=11.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:854,105,0 chrVIII 93143 . T C 807 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=0;QD=11.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:840,105,0 chrVIII 93146 . T C 810 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=0;QD=11.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:843,105,0 chrVIII 93151 . T C 808 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.20;MQ0=0;QD=12.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:841,102,0 chrVIII 93153 . T C 785 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.20;MQ0=0;QD=11.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:818,102,0 chrVIII 93158 . G A 580 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.88;MQ0=0;QD=11.37;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:75:613,75,0 chrVIII 93159 . T A 582 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.88;MQ0=0;QD=11.41;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:75:615,75,0 chrVIII 93161 . C T 567 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.88;MQ0=0;QD=11.12;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:75:600,75,0 chrVIII 93163 . C T 580 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=11.15;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:75:613,75,0 chrVIII 93164 . G C 540 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.08;MQ0=0;QD=9.82;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,54:55:75:573,75,0 chrVIII 93218 . A G 1143 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.94;MQ0=0;QD=19.71;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1176,141,0 chrVIII 93251 . C T 1127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=0;MQRankSum=0.645;QD=22.10;ReadPosRankSum=-1.393;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1160,119,0 chrVIII 93257 . C T 1128 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=0;QD=23.50;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1161,138,0 chrVIII 93284 . A G 254 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=17;Dels=0.00;FS=12.304;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.66;MQ0=0;MQRankSum=-1.735;QD=14.94;ReadPosRankSum=1.531;SB=-7.475e-03 GT:AD:DP:GQ:PL 1/1:1,16:17:39:287,39,0 chrVIII 93290 . C T 145.03 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.92;MQ0=0;QD=18.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:24:178,24,0 chrVIII 93391 . T C 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=1.37;SB=-1.773e+00 GT:AD:DP:GQ:PL 1/1:0,13:13:6:49,6,0 chrVIII 93392 . C G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=1.68;SB=-1.773e+00 GT:AD:DP:GQ:PL 1/1:0,13:13:6:53,6,0 chrVIII 93395 . A G 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=1.22;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,17:17:6:52,6,0 chrVIII 93398 . G A 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=2.83;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:9:83,9,0 chrVIII 93401 . A G 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;QD=2.47;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:9:79,9,0 chrVIII 93405 . T C 71.51 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;QD=3.11;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:12:104,12,0 chrVIII 93407 . A G 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;QD=3.15;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:12:105,12,0 chrVIII 93417 . T G 150.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.59;MQ0=0;QD=4.55;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,33:33:21:183,21,0 chrVIII 93422 . G A 156.06 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.36;MQ0=0;QD=4.59;SB=-2.207e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:21:189,21,0 chrVIII 93425 . T C 142.06 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=3.95;SB=-4.307e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:21:175,21,0 chrVIII 93446 . T A 252 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.17;MQ0=0;QD=5.48;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:33:285,33,0 chrVIII 93450 . A G 249 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=5.08;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:33:282,33,0 chrVIII 93466 . T C 263 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.87;MQ0=0;QD=5.84;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:36:296,36,0 chrVIII 93467 . A G 268 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.87;MQ0=0;QD=5.96;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:36:301,36,0 chrVIII 93486 . C A 248 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.9532;MLEAC=2;MLEAF=1.00;MQ=26.11;MQ0=0;QD=4.77;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:33:281,33,0 chrVIII 93500 . A G 191.01 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.14;MQ0=0;QD=3.60;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:27:224,27,0 chrVIII 93506 . G C 257 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=4.94;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:33:290,33,0 chrVIII 93509 . G A 255 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=0;QD=4.90;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:33:288,33,0 chrVIII 93512 . G C 260 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=4.91;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:33:293,33,0 chrVIII 93518 . G A 261 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=4.02;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:33:294,33,0 chrVIII 93525 . T C 271 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;MQRankSum=-0.916;QD=4.11;ReadPosRankSum=2.375;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:2,64:66:36:304,36,0 chrVIII 93533 . A T 372 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=5.90;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:45:405,45,0 chrVIII 93534 . T A 337 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=5.35;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:45:370,45,0 chrVIII 93546 . A G 431 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=6.25;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:54:464,54,0 chrVIII 93547 . T C 431 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=6.25;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:54:464,54,0 chrVIII 93555 . A G 394 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.25;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:48:427,48,0 chrVIII 93557 . G A 396 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.29;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:48:429,48,0 chrVIII 93558 . C T 402 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.38;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:48:435,48,0 chrVIII 93563 . T C 394 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.97;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:48:427,48,0 chrVIII 93566 . A T 415 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.48;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:48:448,48,0 chrVIII 93569 . A C 368 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.24;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:45:401,45,0 chrVIII 93571 . G A 378 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.41;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:45:411,45,0 chrVIII 93574 . T C 370 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.27;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:45:403,45,0 chrVIII 93578 . A G 333 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.94;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:45:366,45,0 chrVIII 93580 . G C 356 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.42;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:45:389,45,0 chrVIII 93581 . A G 344 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.17;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:45:377,45,0 chrVIII 93585 . T C 368 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.46;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:45:401,45,0 chrVIII 93602 . A G 245 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.344;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.9559;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.045;QD=4.90;ReadPosRankSum=3.926;SB=3.17 GT:AD:DP:GQ:PL 1/1:6,44:50:33:278,33,0 chrVIII 93638 . T C 82.26 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;QD=5.88;SB=-1.622e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:15:115,15,0 chrVIII 93655 . G A 592 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=17.41;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:69:625,69,0 chrVIII 93659 . T A 763 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=17.34;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:90:796,90,0 chrVIII 93665 . C T 898 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=17.27;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:931,99,0 chrVIII 93752 . A G 3839.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=23.55;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3839,455,0 chrVIII 93770 . A T 3135 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=23.75;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3168,348,0 chrVIII 93824 . T A 70.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.75;SB=-5.455e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:103,12,0 chrVIII 93839 . G A 53.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:86,9,0 chrVIII 93842 . A G 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.59;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:75,9,0 chrVIII 93848 . T G 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.36;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:105,12,0 chrVIII 93857 . A G 213 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.31;SB=-1.506e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:30:246,30,0 chrVIII 93872 . T C 555 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.14;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:63:588,63,0 chrVIII 93875 . G A 535 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.21;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:63:568,63,0 chrVIII 93878 . T G 544 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.32;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:66:577,66,0 chrVIII 93884 . T C 621 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:78:654,78,0 chrVIII 93896 . A G 895 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:928,105,0 chrVIII 93928 . G T 1120 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1153,129,0 chrVIII 93929 . A G 1139 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1172,129,0 chrVIII 93932 . A G 1131 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1164,129,0 chrVIII 93935 . C T 1147 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1180,129,0 chrVIII 93938 . C A 1152 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1185,129,0 chrVIII 93950 . T C 935 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:968,111,0 chrVIII 93961 . A G 806 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:93:839,93,0 chrVIII 93962 . C T 833 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:93:866,93,0 chrVIII 93968 . A G 783 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.917;QD=11.51;ReadPosRankSum=1.681;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,67:68:93:816,93,0 chrVIII 93971 . T G 709 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:84:742,84,0 chrVIII 93974 . G A 686 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:81:719,81,0 chrVIII 93977 . T C 517 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.91;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:63:550,63,0 chrVIII 93980 . A G 445 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.56;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:54:478,54,0 chrVIII 93983 . A G 451 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.395;QD=9.60;ReadPosRankSum=2.345;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:2,45:47:54:484,54,0 chrVIII 93995 . G A 418 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.67;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:51:451,51,0 chrVIII 93997 . A C 421 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.313;QD=12.76;ReadPosRankSum=1.628;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:1,32:33:51:454,51,0 chrVIII 94007 . T C 293 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.46;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:39:326,39,0 chrVIII 94010 . T C 203.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.46;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,24:24:27:236,27,0 chrVIII 94012 . A G 184.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.706;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.436;QD=7.67;ReadPosRankSum=2.706;SB=-4.095e-02 GT:AD:DP:GQ:PL 1/1:3,21:24:24:217,24,0 chrVIII 94022 . G T 131.13 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.74;SB=-1.418e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:18:164,18,0 chrVIII 94024 . C T 128.13 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.54;SB=-1.418e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:18:161,18,0 chrVIII 94034 . T G 44.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.42;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:77,9,0 chrVIII 94184 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.38;MQ0=0;QD=0.80;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,15:15:6:43,6,0 chrVIII 94196 . T C 131.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.52;MQ0=0;QD=5.70;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:21:164,21,0 chrVIII 94197 . T C 130.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.25;MQ0=0;MQRankSum=0.144;QD=5.42;ReadPosRankSum=1.589;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,23:24:21:163,21,0 chrVIII 94204 . G T 178.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.26;MQ0=0;QD=5.09;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,35:35:27:211,27,0 chrVIII 94208 . T C 244 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.34;MQ0=0;QD=6.10;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:36:277,36,0 chrVIII 94214 . G A 247 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.32;MQ0=0;QD=5.88;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:36:280,36,0 chrVIII 94223 . T C 245 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.48;MQ0=0;QD=5.10;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:36:278,36,0 chrVIII 94226 . G A 248 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.35;MQ0=0;QD=5.06;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:36:281,36,0 chrVIII 94241 . G A 318 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=0;QD=5.58;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:45:351,45,0 chrVIII 94256 . C T 354 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.47;MQ0=0;QD=6.21;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:48:387,48,0 chrVIII 94262 . T C 350 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.78;MQ0=0;QD=6.25;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:48:383,48,0 chrVIII 94271 . T G 374 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.74;MQ0=0;QD=7.06;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:51:407,51,0 chrVIII 94274 . T G 332 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.81;MQ0=0;QD=6.78;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:45:365,45,0 chrVIII 94277 . C T 312 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.76;MQ0=0;QD=6.78;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:42:345,42,0 chrVIII 94286 . A C 206 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;QD=6.24;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,33:33:30:239,30,0 chrVIII 94287 . T G 196 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;QD=5.94;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,33:33:30:229,30,0 chrVIII 94298 . A T 100.26 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=4.36;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:15:133,15,0 chrVIII 94316 . C T 77.51 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=7.05;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:110,12,0 chrVIII 94364 . T A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.59;MQ0=0;MQRankSum=-0.736;QD=5.95;ReadPosRankSum=0.736;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:1,2:3:6:49,6,0 chrVIII 94382 . A G 172.01 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.44;MQ0=0;QD=15.64;SB=-5.299e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:27:205,27,0 chrVIII 94390 . C T 326 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.34;MQ0=0;QD=16.30;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:48:359,48,0 chrVIII 94414 . G A 1479 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=20.54;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1512,177,0 chrVIII 94442 . C T 1901 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;QD=21.12;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1934,225,0 chrVIII 94466 . T C 1740 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=20.71;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1773,207,0 chrVIII 94499 . G A 543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.271;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=29.83;MQ0=0;MQRankSum=0.231;QD=18.10;ReadPosRankSum=1.155;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:63:576,63,0 chrVIII 94741 . T C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.82;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,29:29:6:55,6,0 chrVIII 94972 . A G 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=0.67;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,108:108:12:105,12,0 chrVIII 94976 . T C 131.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;MQRankSum=1.071;QD=1.18;ReadPosRankSum=1.638;SB=-5.214e+01 GT:AD:DP:GQ:PL 1/1:1,109:111:18:164,18,0 chrVIII 94977 . C T 127.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;MQRankSum=-1.576;QD=1.15;ReadPosRankSum=1.638;SB=-5.314e+01 GT:AD:DP:GQ:PL 1/1:1,110:111:18:160,18,0 chrVIII 94981 . A G 228 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=30.44;MQ0=0;QD=1.81;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:30:261,30,0 chrVIII 95000 . G A 897 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8898;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;QD=6.85;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:930,102,0 chrVIII 96300 . C T 3929.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.3543;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3929,438,0 chrVIII 96393 . C T 5533.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=10.7831;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.44;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5533,603,0 chrVIII 96685 . C T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3564,387,0 chrVIII 97127 . G A 3382.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3382,369,0 chrVIII 97536 . T C 4267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=15.9283;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.472;QD=21.23;ReadPosRankSum=1.697;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:1,197:201:99:4267,495,0 chrVIII 97650 . T C 5160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.382;DP=248;Dels=0.00;FS=5.221;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=0.409;QD=20.81;ReadPosRankSum=3.368;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:4,243:248:99:5160,585,0 chrVIII 97668 . A G 5246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=270;Dels=0.00;FS=8.150;HaplotypeScore=12.9025;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.227;QD=19.43;ReadPosRankSum=2.320;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:2,264:270:99:5246,591,0 chrVIII 98223 . C T 2743 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.1643;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.10;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2776,309,0 chrVIII 98284 . G A 2411 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=28.6463;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=16.86;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:2444,270,0 chrVIII 98484 . A T 5086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=235;Dels=0.00;FS=3.499;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.789;QD=21.64;ReadPosRankSum=1.703;SB=-2.821e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5086,561,0 chrVIII 98622 . C G 4802.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=11.1357;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=18.54;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,255:259:99:4802,572,0 chrVIII 98643 . C A 3026 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=15.93;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3059,345,0 chrVIII 98989 . T C 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.263;DP=187;Dels=0.00;FS=14.847;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.873;QD=19.41;ReadPosRankSum=3.319;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:4,183:187:99:3629,432,0 chrVIII 99089 . G A 3943.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.53;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3943,435,0 chrVIII 99112 . A G 3954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.224;QD=21.49;ReadPosRankSum=1.694;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3954,450,0 chrVIII 101005 . C T 3539.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.07;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3539,387,0 chrVIII 101246 . A T 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=3.087;HaplotypeScore=7.3663;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.671;QD=22.92;ReadPosRankSum=1.671;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3920,423,0 chrVIII 102191 . T C 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=150;Dels=0.00;FS=3.921;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.983;QD=21.29;ReadPosRankSum=1.709;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3226,366,0 chrVIII 103852 . C T 4481.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.75;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4481,495,0 chrVIII 104423 . C T 2294 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=18.35;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:2327,255,0 chrVIII 104426 . A C 2194 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=123;Dels=0.00;FS=6.877;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;MQRankSum=-0.350;QD=17.84;ReadPosRankSum=2.390;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2227,252,0 chrVIII 104429 . G A 2299 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=18.84;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2332,255,0 chrVIII 104461 . A C 2423 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=17.06;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2456,291,0 chrVIII 105532 . C T 1136 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.62;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1169,129,0 chrVIII 105578 . T C 803 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.84;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,44:45:96:836,96,0 chrVIII 105670 . T A 232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.042;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.273;QD=13.65;ReadPosRankSum=1.504;SB=-5.498e+01 GT:AD:DP:GQ:PL 1/1:1,16:17:30:265,30,0 chrVIII 105848 . G C 1495 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1528,177,0 chrVIII 105958 . T C 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=3.404;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.405;QD=21.83;ReadPosRankSum=1.678;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2806,315,0 chrVIII 106126 . A G 2778 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.70;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2811,336,0 chrVIII 106261 . T A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3325,372,0 chrVIII 106528 . T C 4523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=198;Dels=0.00;FS=3.285;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.396;QD=22.84;ReadPosRankSum=1.679;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4523,510,0 chrVIII 106822 . G A 3692.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=23.7039;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.98;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3692,408,0 chrVIII 106947 . G A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.2205;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.88;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3457,381,0 chrVIII 107008 . C T 4284.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.54;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4284,471,0 chrVIII 107151 . C A 3033 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3066,336,0 chrVIII 107309 . A G 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=3.299;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.747;QD=21.94;ReadPosRankSum=1.669;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2446,273,0 chrVIII 107541 . T C 2200 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.64;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2233,252,0 chrVIII 107888 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.3470;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.600;QD=22.71;ReadPosRankSum=1.688;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,155:159:99:3611,411,0 chrVIII 107993 . T A 4182.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.6094;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.19;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4182,462,0 chrVIII 108568 . G A 1276 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.72;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1309,147,0 chrVIII 108735 . G A 1957 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.09;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1990,216,0 chrVIII 109025 . A G 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.304;DP=169;Dels=0.00;FS=18.882;HaplotypeScore=14.5643;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.553;QD=22.28;ReadPosRankSum=3.325;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:4,165:169:99:3766,452,0 chrVIII 110021 . C T 2721 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2754,300,0 chrVIII 110305 . C T 3288.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3288,366,0 chrVIII 110439 . A G 3796.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.6450;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.57;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:3796,449,0 chrVIII 110477 . C T 4976.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.14;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4976,543,0 chrVIII 110872 . C T 3012 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.3024;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.83;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3045,333,0 chrVIII 111464 . G C 1779 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.99;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1812,219,0 chrVIII 111477 . G T 1731 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.61;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1764,195,0 chrVIII 111623 . G T 2423 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=13.8765;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.89;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2456,270,0 chrVIII 111695 . G A 4439.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.74;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4439,507,0 chrVIII 111832 . C T 5213.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.3160;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.59;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5213,588,0 chrVIII 111971 . C T 5333.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.69;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5333,585,0 chrVIII 112492 . A T 3732.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.04;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3732,420,0 chrVIII 112829 . A T 4500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.691;QD=24.32;ReadPosRankSum=1.713;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4500,492,0 chrVIII 112944 . T C 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.617;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-1.732;QD=20.49;ReadPosRankSum=1.657;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2902,333,0 chrVIII 112966 . G A 2789 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.51;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2822,309,0 chrVIII 113465 . C A 2446 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8575;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.65;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2479,276,0 chrVIII 113512 . A C 3054 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.3132;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3087,354,0 chrVIII 114144 . A G 4617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=15.9169;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.008;QD=22.97;ReadPosRankSum=1.680;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4617,522,0 chrVIII 114241 . C T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.6243;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.28;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3605,402,0 chrVIII 114246 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.04;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3428,402,0 chrVIII 114337 . G A 4198.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.21;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4198,462,0 chrVIII 114567 . G A 3681.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.86;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3681,408,0 chrVIII 114900 . A G 3209.99 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3243,372,0 chrVIII 115399 . T C 86.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.506;DP=174;Dels=0.00;FS=2.437;HaplotypeScore=280.7204;MLEAC=1;MLEAF=0.500;MQ=56.82;MQ0=0;MQRankSum=-0.899;QD=0.49;ReadPosRankSum=-5.890;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:160,14:174:99:116,0,189 chrVIII 115401 . T C 255.06 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.138;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=281.5871;MLEAC=1;MLEAF=0.500;MQ=56.85;MQ0=0;MQRankSum=2.685;QD=1.45;ReadPosRankSum=4.753;SB=-1.451e+03 GT:AD:DP:GQ:PL 0/1:8,165:176:16:285,0,16 chrVIII 115445 . C T 3762.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.23;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3762,411,0 chrVIII 115710 . T C 4209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=184;Dels=0.00;FS=3.203;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.527;QD=22.88;ReadPosRankSum=1.694;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4209,474,0 chrVIII 115917 . A T 3408.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.57;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3408,372,0 chrVIII 115977 . A T 4313.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=24.65;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4313,477,0 chrVIII 116063 . A G 2061 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=20.41;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2094,249,0 chrVIII 116184 . A T 2921 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=22.30;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2954,330,0 chrVIII 116213 . G A 2477 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=21.35;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2510,285,0 chrVIII 116228 . G T 1908 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;QD=20.97;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1941,216,0 chrVIII 116242 . C T 1607 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.66;MQ0=0;QD=22.96;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1640,180,0 chrVIII 116251 . C T 1410 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=0;QD=21.04;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1443,165,0 chrVIII 116306 . T C 1196 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.05;MQ0=0;QD=20.98;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1229,147,0 chrVIII 116310 . C T 1313 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.08;MQ0=0;QD=21.88;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1346,150,0 chrVIII 116318 . T C 1361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=62;Dels=0.00;FS=9.979;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=35.15;MQ0=0;MQRankSum=-1.534;QD=21.95;ReadPosRankSum=2.371;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1394,156,0 chrVIII 116330 . G A 1391 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=37.41;MQ0=0;QD=22.08;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1424,153,0 chrVIII 116378 . C A 876 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.26;MQ0=0;QD=19.47;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:909,102,0 chrVIII 116442 . G A 270 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=17;Dels=0.00;FS=11.761;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.39;MQ0=2;MQRankSum=-0.579;QD=15.88;ReadPosRankSum=-0.116;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:3,14:17:36:303,36,0 chrVIII 116445 . A T 269 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=17;Dels=0.00;FS=11.761;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.39;MQ0=2;MQRankSum=-1.042;QD=15.82;ReadPosRankSum=-1.042;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:3,14:17:36:302,36,0 chrVIII 116452 . G A 257 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.496;DP=16;Dels=0.00;FS=11.461;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.74;MQ0=2;MQRankSum=0.248;QD=16.06;ReadPosRankSum=-0.992;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:3,13:16:36:290,36,0 chrVIII 116463 . T G 161.03 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=2;QD=12.39;SB=-2.602e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:24:194,24,0 chrVIII 116466 . G A 129.98 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.927;DP=19;Dels=0.00;FS=21.553;HaplotypeScore=4.2752;MLEAC=1;MLEAF=0.500;MQ=21.39;MQ0=2;MQRankSum=1.545;QD=6.84;ReadPosRankSum=0.533;SB=0.783 GT:AD:DP:GQ:PL 0/1:7,8:19:3:159,0,3 chrVIII 116565 . C T 105.26 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.51;MQ0=0;QD=2.45;SB=-2.776e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:15:138,15,0 chrVIII 116801 . A T 1297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;MQRankSum=0.846;QD=15.08;ReadPosRankSum=1.208;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1330,150,0 chrVIII 116814 . A G 1666 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.4812;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=17.54;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1699,192,0 chrVIII 116923 . C T 2472 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2317;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=19.02;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2505,279,0 chrVIII 116958 . G A 3335.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=21.11;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3335,369,0 chrVIII 116975 . C T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=19.69;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3328,366,0 chrVIII 116997 . T C 2966 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=18.65;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:2999,336,0 chrVIII 117152 . A G 3981.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.9605;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=22.88;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3981,444,0 chrVIII 117170 . A G 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=179;Dels=0.00;FS=2.648;HaplotypeScore=4.7809;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;MQRankSum=-0.614;QD=22.28;ReadPosRankSum=2.422;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3988,459,0 chrVIII 117203 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=22.29;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3500,387,0 chrVIII 117292 . C A 3183 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=25.06;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3216,354,0 chrVIII 117334 . C T 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=123;Dels=0.00;FS=3.039;HaplotypeScore=6.3621;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;MQRankSum=0.376;QD=17.05;ReadPosRankSum=2.368;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:2,119:123:99:2130,234,0 chrVIII 117335 . T C 2041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8394;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;MQRankSum=-1.097;QD=16.87;ReadPosRankSum=2.409;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2074,237,0 chrVIII 117358 . C T 1566 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;QD=13.38;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1599,177,0 chrVIII 117383 . T G 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=123;Dels=0.00;FS=3.082;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;MQRankSum=-1.477;QD=11.55;ReadPosRankSum=1.704;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:1454,168,0 chrVIII 117412 . T C 1482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;MQRankSum=-1.559;QD=12.35;ReadPosRankSum=1.703;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1515,180,0 chrVIII 117417 . T A 1661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=3.200;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;MQRankSum=0.992;QD=14.20;ReadPosRankSum=1.703;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1694,186,0 chrVIII 117423 . A C 1827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;MQRankSum=0.127;QD=14.73;ReadPosRankSum=1.704;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:1860,207,0 chrVIII 117796 . G C 3683.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.16;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3683,423,0 chrVIII 117849 . C T 4344.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.54;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4344,480,0 chrVIII 118068 . A G 4093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.301;DP=198;Dels=0.00;FS=5.216;HaplotypeScore=11.0159;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.428;QD=20.67;ReadPosRankSum=3.398;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:4,194:198:99:4093,483,0 chrVIII 118187 . T C 2551 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.9969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.59;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2584,297,0 chrVIII 118687 . C T 4361.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4361,489,0 chrVIII 118899 . A G 3000 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.90;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3033,357,0 chrVIII 119053 . C T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.3216;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.81;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3513,384,0 chrVIII 119178 . C A 2828 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.37;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2861,318,0 chrVIII 119193 . A C 2486 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=17.26;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2519,285,0 chrVIII 119502 . C T 719 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=19.43;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:84:752,84,0 chrVIII 119759 . C T 1876 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=23.75;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1909,216,0 chrVIII 119946 . A G 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=87;Dels=0.00;FS=5.728;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.242;QD=23.06;ReadPosRankSum=1.692;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:2039,234,0 chrVIII 120226 . A G 6043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=266;Dels=0.00;FS=5.457;HaplotypeScore=23.3321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.426;QD=22.72;ReadPosRankSum=1.679;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,259:266:99:6043,684,0 chrVIII 120385 . T G 6718.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=18.5091;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.06;SB=-3.127e+03 GT:AD:DP:GQ:PL 1/1:0,317:319:99:6718,791,0 chrVIII 120445 . A G 6925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=12.0564;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.321;QD=22.85;ReadPosRankSum=1.652;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:1,301:303:99:6925,783,0 chrVIII 120946 . T C 5708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=241;Dels=0.00;FS=3.349;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.101;QD=23.68;ReadPosRankSum=1.718;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:1,239:241:99:5708,645,0 chrVIII 121477 . A T 6052.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.5584;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.31;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:6052,666,0 chrVIII 121834 . T A 1750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.087;QD=21.60;ReadPosRankSum=1.689;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1783,198,0 chrVIII 122315 . T C 4394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;DP=220;Dels=0.00;FS=14.379;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-2.113;QD=19.97;ReadPosRankSum=3.421;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:4,216:220:99:4394,504,0 chrVIII 122471 . A T 6528.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.74;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:6528,714,0 chrVIII 122634 . G A 60.51 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=0.36;SB=-7.455e+02 GT:AD:DP:GQ:PL 1/1:0,166:166:12:93,12,0 chrVIII 122655 . G A 4423.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.79;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4423,483,0 chrVIII 123099 . T C 4168.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.9625;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.05;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4168,471,0 chrVIII 123306 . T C 4575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.715;QD=22.99;ReadPosRankSum=1.715;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4575,519,0 chrVIII 123473 . A G 4833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.115;QD=22.80;ReadPosRankSum=1.716;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:4833,555,0 chrVIII 123915 . C T 1348 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.12;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1381,153,0 chrVIII 123958 . G A 41.97 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=19.0259;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=0.67;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:9:74,9,0 chrVIII 124092 . T A 1974 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.99;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2007,222,0 chrVIII 124373 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.333;DP=143;Dels=0.00;FS=4.027;HaplotypeScore=11.3017;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.636;QD=23.52;ReadPosRankSum=1.458;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,139:143:99:3364,378,0 chrVIII 124457 . T C 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=3.301;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.184;QD=20.14;ReadPosRankSum=1.707;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2833,327,0 chrVIII 124744 . G A 5945.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=15.4974;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.87;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,257:260:99:5945,648,0 chrVIII 124904 . G A 6542.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=11.8753;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.28;SB=-3.193e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:6542,714,0 chrVIII 124933 . T A 6888.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=9.7533;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.51;SB=-2.944e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:6888,753,0 chrVIII 125040 . A G 4985.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.87;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:4985,579,0 chrVIII 125084 . T C 4123.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.70;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4123,462,0 chrVIII 125108 . G A 3927.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.82;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3927,426,0 chrVIII 125140 . T C 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=153;Dels=0.00;FS=7.691;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.509;QD=19.83;ReadPosRankSum=2.385;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3067,366,0 chrVIII 125249 . C T 3651.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.48;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3651,408,0 chrVIII 125354 . C T 4459.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.98;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4459,492,0 chrVIII 125441 . G A 5196.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.30;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5196,564,0 chrVIII 125465 . C T 5115.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=9.4455;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.86;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,231:234:99:5115,567,0 chrVIII 125771 . C T 2377 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.04;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2410,261,0 chrVIII 125797 . T C 1515 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=17.41;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,83:87:99:1548,177,0 chrVIII 125900 . T G 3046 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=20.31;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3079,371,0 chrVIII 125937 . T C 4058.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.1564;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=23.73;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4058,459,0 chrVIII 125980 . C T 2429 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=24.05;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2462,273,0 chrVIII 126068 . C T 3501.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=22.30;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3501,384,0 chrVIII 126131 . T C 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=202;Dels=0.00;FS=4.202;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;MQRankSum=0.641;QD=16.41;ReadPosRankSum=1.715;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:3314,381,0 chrVIII 126142 . C G 2725 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=123.4477;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;QD=14.73;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:2758,318,0 chrVIII 126148 . C A 2504 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=134.0793;MLEAC=2;MLEAF=1.00;MQ=44.76;MQ0=0;QD=14.07;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:2537,279,0 chrVIII 126255 . T C 2257 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.13;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2290,258,0 chrVIII 126397 . T G 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=132;Dels=0.00;FS=14.823;HaplotypeScore=10.7105;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=-0.290;QD=21.77;ReadPosRankSum=2.947;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2906,324,0 chrVIII 126792 . C T 2470 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.30;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2503,273,0 chrVIII 128904 . C T 3338.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3338,366,0 chrVIII 129265 . C T 3908.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.8547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3908,426,0 chrVIII 129524 . C T 4177.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:4177,462,0 chrVIII 131324 . T C 4485.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.11;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4485,536,0 chrVIII 132728 . A C 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=149;Dels=0.00;FS=3.099;HaplotypeScore=8.1205;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.546;QD=22.82;ReadPosRankSum=1.709;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3400,387,0 chrVIII 133466 . T C 2829 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=12.9377;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2862,324,0 chrVIII 133583 . T C 3121 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=23.29;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3154,363,0 chrVIII 134760 . G A 3023 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=13.1973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3056,336,0 chrVIII 136266 . G T 3142 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3175,345,0 chrVIII 137305 . G A 4530.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.0065;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.32;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4530,498,0 chrVIII 138587 . T C 3288.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3288,372,0 chrVIII 138649 . A G 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.2992;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.570;QD=23.71;ReadPosRankSum=1.709;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3533,399,0 chrVIII 139207 . G C 2168 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.07;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2201,255,0 chrVIII 139248 . G A 2600 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.31;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2633,285,0 chrVIII 139383 . C T 2432 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.52;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2465,273,0 chrVIII 139404 . C T 2372 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.45;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2405,261,0 chrVIII 139405 . C T 2345 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=19.54;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2378,261,0 chrVIII 139506 . C T 3063 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9537;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.31;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3096,339,0 chrVIII 139958 . A T 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=4.832;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.908;QD=24.74;ReadPosRankSum=1.708;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3538,387,0 chrVIII 140065 . G A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3355,375,0 chrVIII 140398 . G A 4504.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=21.65;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4504,495,0 chrVIII 140403 . G A 4632.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=21.95;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4632,501,0 chrVIII 140905 . T C 4860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.0888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.809;QD=22.40;ReadPosRankSum=1.684;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:1,213:217:99:4860,567,0 chrVIII 140991 . A G 4423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.107;QD=22.57;ReadPosRankSum=1.661;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:4423,510,0 chrVIII 141325 . C G 2886 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.77;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,141:146:99:2919,333,0 chrVIII 141337 . G A 3056 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.37;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3089,336,0 chrVIII 141479 . G A 2680 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.15;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2713,300,0 chrVIII 141625 . C T 2610 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=24.39;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2643,285,0 chrVIII 141685 . A G 1760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.538;QD=20.23;ReadPosRankSum=1.692;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1793,204,0 chrVIII 141692 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.66;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1724,189,0 chrVIII 141734 . G A 2480 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2683;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.67;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2513,276,0 chrVIII 141841 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.61;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3400,369,0 chrVIII 141876 . C T 3582.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.90;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3582,387,0 chrVIII 141885 . A G 3649.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=18.91;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3649,420,0 chrVIII 141969 . T C 5588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=15.5862;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.331;QD=22.53;ReadPosRankSum=2.430;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:2,246:248:99:5588,648,0 chrVIII 142155 . G A 6710.01 PASS AC=2;AF=1.00;AN=2;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=20.0194;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=19.68;SB=-3.620e+03 GT:AD:DP:GQ:PL 1/1:0,341:341:99:6710,750,0 chrVIII 142191 . C T 5517.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=32.4920;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.21;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:0,270:273:99:5517,606,0 chrVIII 142299 . T C 4719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.277;DP=256;Dels=0.00;FS=2.036;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-0.793;QD=18.43;ReadPosRankSum=2.896;SB=-2.993e+03 GT:AD:DP:GQ:PL 1/1:4,252:256:99:4719,540,0 chrVIII 142302 . A G 4627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=268;Dels=0.00;FS=6.039;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-0.345;QD=17.26;ReadPosRankSum=2.814;SB=-3.137e+03 GT:AD:DP:GQ:PL 1/1:3,262:268:99:4627,531,0 chrVIII 142335 . T C 4204.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=16.49;SB=-2.986e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:4204,477,0 chrVIII 142800 . G C 4495.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=15.0602;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.36;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4495,525,0 chrVIII 142863 . A G 4926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.106;DP=236;Dels=0.00;FS=12.454;HaplotypeScore=21.2397;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.159;QD=20.87;ReadPosRankSum=3.394;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:4,232:236:99:4926,561,0 chrVIII 143136 . T C 4552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.318;DP=211;Dels=0.00;FS=12.944;HaplotypeScore=14.7199;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.480;QD=21.57;ReadPosRankSum=3.402;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:4,205:211:99:4552,519,0 chrVIII 143214 . A T 5451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=18.5320;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.742;QD=22.71;ReadPosRankSum=1.703;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:1,239:240:99:5451,606,0 chrVIII 143824 . A G 4701.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.6304;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.51;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4701,540,0 chrVIII 143930 . C T 3712.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.8071;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.50;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3712,411,0 chrVIII 143949 . T C 149.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.090;DP=164;Dels=0.00;FS=7.160;HaplotypeScore=150.0676;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-0.156;QD=0.91;ReadPosRankSum=2.491;SB=-9.956e+01 GT:AD:DP:GQ:PL 1/1:3,11:164:21:182,21,0 chrVIII 144253 . T C 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.199;DP=170;Dels=0.00;FS=16.209;HaplotypeScore=18.4339;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.297;QD=21.14;ReadPosRankSum=3.033;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:4,164:170:99:3593,405,0 chrVIII 144280 . G T 4127.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.55;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4127,456,0 chrVIII 144393 . A G 4011.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.05;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:4011,459,0 chrVIII 144688 . T C 6639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=302;Dels=0.00;FS=7.254;HaplotypeScore=21.5837;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.620;QD=21.98;ReadPosRankSum=2.425;SB=-3.252e+03 GT:AD:DP:GQ:PL 1/1:2,297:302:99:6639,741,0 chrVIII 144730 . A G 6624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=19.2044;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.179;QD=21.51;ReadPosRankSum=1.709;SB=-3.001e+03 GT:AD:DP:GQ:PL 1/1:1,306:308:99:6624,750,0 chrVIII 144796 . C G 5565.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=28.9405;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.53;SB=-2.880e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:5565,627,0 chrVIII 145045 . T C 3539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=163;Dels=0.00;FS=4.771;HaplotypeScore=13.5663;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.449;QD=21.71;ReadPosRankSum=1.711;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3539,405,0 chrVIII 145315 . G C 3731.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.82;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3731,429,0 chrVIII 145363 . C T 3724.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.6534;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.30;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3724,411,0 chrVIII 145441 . C T 4482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.392;QD=22.41;ReadPosRankSum=0.479;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4482,501,0 chrVIII 145684 . C T 3860.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=16.8970;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.98;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3860,429,0 chrVIII 145768 . A G 3925.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=17.9564;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.69;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3925,450,0 chrVIII 145828 . G A 4648.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.2480;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.56;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4648,504,0 chrVIII 145861 . G C 4104.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.2049;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.05;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4104,468,0 chrVIII 145867 . A G 3862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=185;Dels=0.00;FS=10.302;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=0.426;QD=20.88;ReadPosRankSum=2.831;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:3,181:185:99:3862,441,0 chrVIII 146103 . T C 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.066;DP=150;Dels=0.00;FS=13.867;HaplotypeScore=18.1831;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;MQRankSum=0.685;QD=18.79;ReadPosRankSum=3.399;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:4,143:150:99:2852,324,0 chrVIII 146196 . C T 3224.03 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=23.53;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3257,357,0 chrVIII 146679 . T G 46.97 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=0;QD=1.34;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:9:79,9,0 chrVIII 146681 . G T 110.26 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.18;MQ0=0;QD=2.98;SB=-1.703e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:15:143,15,0 chrVIII 146719 . A T 1216 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;QD=17.13;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1249,138,0 chrVIII 146752 . G A 1781 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=21.20;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1814,198,0 chrVIII 146822 . C A 1641 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=20.01;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1674,189,0 chrVIII 146826 . G A 1563 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;QD=17.56;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1596,180,0 chrVIII 146843 . T A 2022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=2.623;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;MQRankSum=-0.652;QD=20.02;ReadPosRankSum=2.376;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2055,234,0 chrVIII 146894 . C T 2533 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=21.11;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2566,288,0 chrVIII 146927 . G A 2570 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.48;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2603,285,0 chrVIII 147004 . C G 1914 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=23.34;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1947,219,0 chrVIII 147047 . C T 2513 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.85;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2546,285,0 chrVIII 147161 . C A 3029 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.77;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3062,336,0 chrVIII 147327 . A G 3880.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.9900;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=23.66;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3880,444,0 chrVIII 147504 . T C 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.500;DP=182;Dels=0.00;FS=3.955;HaplotypeScore=9.5877;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=0.493;QD=18.92;ReadPosRankSum=1.693;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,178:182:99:3444,390,0 chrVIII 147540 . G A 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=4.449;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;MQRankSum=0.933;QD=18.27;ReadPosRankSum=0.244;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2883,312,0 chrVIII 147546 . G A 2698 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=17.63;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2731,297,0 chrVIII 147558 . A G 2076 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;QD=15.49;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2109,249,0 chrVIII 147573 . A C 2002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=2.699;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;MQRankSum=1.806;QD=15.76;ReadPosRankSum=2.372;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2035,225,0 chrVIII 147628 . T A 1897 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=17.73;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1930,216,0 chrVIII 147667 . G C 1390 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.75;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1423,162,0 chrVIII 147745 . C T 1413 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=19.36;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1446,165,0 chrVIII 147843 . T C 1071 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.79;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1104,129,0 chrVIII 148168 . G A 2180 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=20.00;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2213,246,0 chrVIII 148221 . G A 2228 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=19.21;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2261,246,0 chrVIII 148275 . T C 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=2.790;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-0.087;QD=19.72;ReadPosRankSum=2.392;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2538,294,0 chrVIII 148297 . T A 2657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=0.266;QD=20.44;ReadPosRankSum=1.705;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2690,294,0 chrVIII 148317 . C G 2402 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=17.41;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2435,273,0 chrVIII 148334 . T A 2189 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=16.34;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2222,249,0 chrVIII 148409 . T G 2417 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.02;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2450,282,0 chrVIII 148418 . C T 2351 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.62;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2384,261,0 chrVIII 148490 . A G 3700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=159;Dels=0.01;FS=2.954;HaplotypeScore=9.7775;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.832;QD=23.27;ReadPosRankSum=2.418;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3700,417,0 chrVIII 148542 . A G 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;DP=142;Dels=0.00;FS=5.328;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=0.936;QD=21.63;ReadPosRankSum=2.951;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3104,360,0 chrVIII 148734 . G A 2395 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;QD=22.38;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2428,270,0 chrVIII 148745 . C A 2230 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=22.53;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2263,252,0 chrVIII 148762 . C T 2177 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=21.14;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2210,249,0 chrVIII 148798 . C G 2267 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.99;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2300,258,0 chrVIII 148863 . G A 2143 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.80;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2176,240,0 chrVIII 148939 . A T 1707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=0;MQRankSum=-0.962;QD=20.82;ReadPosRankSum=1.689;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1740,195,0 chrVIII 148943 . T G 1614 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;QD=19.93;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1647,195,0 chrVIII 148956 . A G 1449 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.57;MQ0=0;QD=18.34;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1482,171,0 chrVIII 148990 . G A 1208 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=17.76;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1241,138,0 chrVIII 149040 . C G 1488 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=11.6208;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.08;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1521,174,0 chrVIII 149077 . C T 1787 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.79;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1820,198,0 chrVIII 149162 . G A 1261 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=23.35;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1294,144,0 chrVIII 149249 . A T 1127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=51.4255;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=0.595;QD=17.61;ReadPosRankSum=1.678;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1160,132,0 chrVIII 149250 . T A 1017 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=52.5048;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=15.89;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1050,120,0 chrVIII 149305 . G T 2002 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=19.25;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2035,228,0 chrVIII 149347 . C A 2467 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.39;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2500,273,0 chrVIII 149376 . C A 1861 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=18.07;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1894,207,0 chrVIII 149385 . C T 1672 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=16.55;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1705,186,0 chrVIII 149390 . C G 1490 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=15.52;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1523,171,0 chrVIII 149430 . G A 1400 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.9705;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=17.28;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1433,159,0 chrVIII 149765 . C A 2866 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2899,318,0 chrVIII 150118 . G C 3892.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.7062;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.99;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3892,459,0 chrVIII 150558 . C T 2431 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.07;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2464,267,0 chrVIII 150619 . C T 1843 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=19.82;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1876,207,0 chrVIII 150639 . C T 1630 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=16.98;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1663,183,0 chrVIII 150924 . T C 4308.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.16;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4308,492,0 chrVIII 151416 . T C 2186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=108;Dels=0.00;FS=2.763;HaplotypeScore=8.8967;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.356;QD=20.24;ReadPosRankSum=2.313;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2219,264,0 chrVIII 151640 . A G 2680 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.7368;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.62;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2713,309,0 chrVIII 151701 . C T 3489.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.22;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3489,387,0 chrVIII 152094 . A C 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=3.053;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.631;QD=21.95;ReadPosRankSum=1.631;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2294,264,0 chrVIII 152121 . G A 2467 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.64;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2500,285,0 chrVIII 152274 . C T 2505 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.98;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2538,279,0 chrVIII 152397 . C T 2642 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.39;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2675,291,0 chrVIII 152466 . C A 2649 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.89;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2682,303,0 chrVIII 152625 . T C 2714 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.67;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2747,315,0 chrVIII 152677 . C T 2501 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.05;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2534,276,0 chrVIII 152946 . G A 2215 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.09;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2248,246,0 chrVIII 152961 . A G 2071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=3.203;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.075;QD=18.01;ReadPosRankSum=1.521;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2104,237,0 chrVIII 153117 . A G 3141 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.10;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3174,375,0 chrVIII 153178 . T C 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=2.939;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.862;QD=21.81;ReadPosRankSum=2.296;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3174,360,0 chrVIII 153195 . A G 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=135;Dels=0.00;FS=6.940;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-0.301;QD=21.45;ReadPosRankSum=2.395;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2929,336,0 chrVIII 153282 . G A 2318 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.98;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2351,267,0 chrVIII 153731 . T C 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=191;Dels=0.00;FS=4.680;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.276;QD=19.75;ReadPosRankSum=1.695;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:1,187:191:99:3772,449,0 chrVIII 153991 . C T 2683 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2716,297,0 chrVIII 154060 . A G 2654 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2933;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.49;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2687,300,0 chrVIII 154229 . C T 2531 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.75;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2564,279,0 chrVIII 154677 . T A 2872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=139;Dels=0.00;FS=3.023;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-0.363;QD=20.66;ReadPosRankSum=2.414;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2905,324,0 chrVIII 154680 . A G 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=3.266;HaplotypeScore=2.6694;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-0.841;QD=19.60;ReadPosRankSum=1.683;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2777,315,0 chrVIII 154704 . A G 2269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=3.295;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.660;QD=17.87;ReadPosRankSum=1.677;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2302,267,0 chrVIII 154746 . G A 2141 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=17.41;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2174,240,0 chrVIII 154932 . C T 2886 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=22.55;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2919,315,0 chrVIII 154980 . A T 3036 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.29;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3069,342,0 chrVIII 155037 . C T 2506 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2539,285,0 chrVIII 155175 . T C 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=3.541;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-0.383;QD=21.42;ReadPosRankSum=1.701;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2475,282,0 chrVIII 155186 . A G 2466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=115;Dels=0.00;FS=5.967;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-1.062;QD=21.44;ReadPosRankSum=2.939;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2499,279,0 chrVIII 155291 . C T 2415 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.22;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2448,264,0 chrVIII 155587 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.40;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3136,345,0 chrVIII 155592 . C T 3024 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.60;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3057,333,0 chrVIII 155772 . G A 2888 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.4781;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.05;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2921,324,0 chrVIII 156029 . A T 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=152;Dels=0.00;FS=13.399;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.583;QD=24.63;ReadPosRankSum=2.914;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3743,414,0 chrVIII 156096 . A C 3296.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3296,375,0 chrVIII 156307 . T C 3345.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3345,384,0 chrVIII 156420 . T C 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=3.544;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=1.544;QD=22.41;ReadPosRankSum=1.709;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3316,381,0 chrVIII 156477 . A G 2701 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.6105;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.78;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2734,321,0 chrVIII 156609 . A G 3275.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.39;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3275,366,0 chrVIII 156690 . A C 2817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=144;Dels=0.00;FS=2.854;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=-0.043;QD=19.56;ReadPosRankSum=1.323;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2850,308,0 chrVIII 156698 . T G 2679 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=19.00;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2712,303,0 chrVIII 156724 . C T 2703 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.2294;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.77;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2736,297,0 chrVIII 156802 . A G 2699 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.94;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2732,309,0 chrVIII 157009 . C T 2606 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.86;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2639,288,0 chrVIII 159331 . G A 3834.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.0515;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.16;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3834,429,0 chrVIII 159794 . T G 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.199;DP=197;Dels=0.00;FS=186.678;HaplotypeScore=26.1353;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=0;MQRankSum=-0.322;QD=0.19;ReadPosRankSum=-3.047;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:148,46:197:68:68,0,2177 chrVIII 160496 . C T 3859.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.3750;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.09;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3859,435,0 chrVIII 161791 . G T 127.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;DP=48;Dels=0.00;FS=3.002;HaplotypeScore=9.5353;MLEAC=1;MLEAF=0.500;MQ=59.03;MQ0=0;MQRankSum=-0.448;QD=2.65;ReadPosRankSum=-4.447;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,20:48:99:157,0,316 chrVIII 161961 . G A 4739.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=15.4343;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.94;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4739,525,0 chrVIII 162659 . C T 4573.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.5711;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.60;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4573,501,0 chrVIII 162713 . T C 4409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.833;QD=20.80;ReadPosRankSum=1.667;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4409,492,0 chrVIII 163422 . G C 3762.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3762,432,0 chrVIII 163731 . C T 3190 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3223,360,0 chrVIII 164274 . A G 3407.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.41;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3407,399,0 chrVIII 164870 . T C 3038 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.9223;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.81;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3071,345,0 chrVIII 164881 . C A 2746 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.48;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2779,303,0 chrVIII 165142 . G A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.6020;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.76;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3755,414,0 chrVIII 165485 . G A 2577 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.67;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2610,288,0 chrVIII 165566 . A G 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=3.040;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.884;QD=17.88;ReadPosRankSum=1.685;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2661,315,0 chrVIII 165647 . A G 3107 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.85;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3140,369,0 chrVIII 165698 . A G 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=141;Dels=0.00;FS=2.992;HaplotypeScore=10.9959;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.839;QD=20.84;ReadPosRankSum=2.415;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2972,354,0 chrVIII 165727 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.85;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3363,369,0 chrVIII 165797 . T C 2816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=3.242;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-1.604;QD=20.71;ReadPosRankSum=1.706;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2849,327,0 chrVIII 165835 . G A 2837 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.9370;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=20.56;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2870,321,0 chrVIII 165848 . G C 2669 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.62;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2702,300,0 chrVIII 165867 . T G 2636 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.12;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2669,300,0 chrVIII 165986 . A G 3291.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.39;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3291,392,0 chrVIII 166165 . G C 4641.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.98;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,196:202:99:4641,516,0 chrVIII 166195 . A G 4599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=203;Dels=0.00;FS=7.388;HaplotypeScore=14.0262;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.696;QD=22.66;ReadPosRankSum=2.425;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4599,519,0 chrVIII 166541 . G A 4655.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.8128;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4655,528,0 chrVIII 166655 . C T 3721.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.2609;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.01;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3721,423,0 chrVIII 166793 . A G 3086 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.85;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3119,363,0 chrVIII 166864 . G A 4360.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4360,477,0 chrVIII 166940 . T C 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.602;DP=157;Dels=0.00;FS=7.945;HaplotypeScore=10.2036;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.191;QD=21.30;ReadPosRankSum=3.763;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:5,151:157:99:3344,375,0 chrVIII 167064 . T C 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=3.727;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.619;QD=22.64;ReadPosRankSum=1.713;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4189,477,0 chrVIII 167156 . A G 4149.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4149,491,0 chrVIII 167277 . T C 4306.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.03;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4306,492,0 chrVIII 167413 . C T 2995 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.69;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3028,324,0 chrVIII 167557 . T A 1436 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=62.8230;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=21.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1469,162,0 chrVIII 167575 . G T 1338 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=21.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1371,150,0 chrVIII 167593 . T C 1081 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1114,126,0 chrVIII 168031 . G A 2993 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.85;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3026,327,0 chrVIII 168081 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.64;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3082,339,0 chrVIII 168804 . G A 2384 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.49;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2417,267,0 chrVIII 169202 . C T 1326.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.438;DP=281;Dels=0.00;FS=11.633;HaplotypeScore=48.9993;MLEAC=1;MLEAF=0.500;MQ=50.90;MQ0=0;MQRankSum=0.328;QD=4.72;ReadPosRankSum=-7.775;SB=-9.020e+02 GT:AD:DP:GQ:PL 0/1:162,116:280:99:1356,0,1279 chrVIII 169208 . T C 1547.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.767;DP=281;Dels=0.00;FS=15.850;HaplotypeScore=68.2348;MLEAC=1;MLEAF=0.500;MQ=50.90;MQ0=0;MQRankSum=-0.132;QD=5.51;ReadPosRankSum=9.646;SB=-1.316e+03 GT:AD:DP:GQ:PL 0/1:106,173:281:99:1577,0,970 chrVIII 169214 . C T 258.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.161;DP=275;Dels=0.00;FS=1.073;HaplotypeScore=53.6446;MLEAC=1;MLEAF=0.500;MQ=50.69;MQ0=0;MQRankSum=-4.342;QD=0.94;ReadPosRankSum=-10.021;SB=-4.070e+02 GT:AD:DP:GQ:PL 0/1:206,69:275:99:288,0,2126 chrVIII 169388 . A G 4249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=199;Dels=0.00;FS=6.012;HaplotypeScore=3.8907;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-0.833;QD=21.35;ReadPosRankSum=2.904;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:4249,486,0 chrVIII 169493 . G A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.6176;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.78;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3310,360,0 chrVIII 169574 . T C 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=183;Dels=0.00;FS=4.088;HaplotypeScore=13.2727;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.438;QD=22.73;ReadPosRankSum=1.713;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4159,474,0 chrVIII 169868 . C T 4758.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.6301;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=22.66;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4758,528,0 chrVIII 170595 . C T 1455 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=20.79;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1488,162,0 chrVIII 171704 . T C 4198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=3.549;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.679;QD=21.20;ReadPosRankSum=1.714;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4198,477,0 chrVIII 172837 . C G 4351.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.7668;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.97;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4351,489,0 chrVIII 173255 . G A 1718 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.61;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1751,192,0 chrVIII 173271 . A G 1594 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=17.71;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1627,186,0 chrVIII 173295 . G A 2096 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.2592;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.05;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2129,231,0 chrVIII 173713 . G A 6874.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=24.3606;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.25;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:0,305:309:99:6874,753,0 chrVIII 174606 . C G 9040.01 filter AC=2;AF=1.00;AN=2;DP=404;Dels=0.00;FS=0.000;HaplotypeScore=22.4019;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.38;SB=-4.037e+03 GT:AD:DP:GQ:PL 1/1:0,400:404:99:9040,1038,0 chrVIII 175012 . C T 9149.01 filter AC=2;AF=1.00;AN=2;DP=385;Dels=0.00;FS=0.000;HaplotypeScore=22.4805;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;QD=23.76;SB=-4.950e+03 GT:AD:DP:GQ:PL 1/1:0,383:385:99:9149,1000,0 chrVIII 175389 . C T 1625 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.1789;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.580;QD=17.66;ReadPosRankSum=1.161;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1658,180,0 chrVIII 175480 . C T 1529 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.2654;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=17.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1562,171,0 chrVIII 175722 . G A 9098.01 filter AC=2;AF=1.00;AN=2;DP=463;Dels=0.00;FS=0.000;HaplotypeScore=6.5028;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.65;SB=-4.145e+03 GT:AD:DP:GQ:PL 1/1:0,456:463:99:9098,994,0 chrVIII 175724 . C A 9249.01 filter AC=2;AF=1.00;AN=2;DP=467;Dels=0.00;FS=0.000;HaplotypeScore=12.3023;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.81;SB=-4.047e+03 GT:AD:DP:GQ:PL 1/1:0,466:467:99:9249,1026,0 chrVIII 176426 . A G 5855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.709;DP=293;Dels=0.00;FS=2.571;HaplotypeScore=23.7377;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.531;QD=19.98;ReadPosRankSum=2.976;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:3,290:293:99:5855,678,0 chrVIII 176624 . C G 3567.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.3538;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.86;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3567,402,0 chrVIII 176679 . T C 2203 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4760;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=16.20;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2236,267,0 chrVIII 177049 . A G 2563 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.09;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2596,297,0 chrVIII 177113 . C T 3059 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.00;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3092,345,0 chrVIII 177619 . A C 6406.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=14.1273;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.47;SB=-3.304e+03 GT:AD:DP:GQ:PL 1/1:0,313:313:99:6406,735,0 chrVIII 177778 . G C 6252.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=17.4581;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-2.905e+03 GT:AD:DP:GQ:PL 1/1:0,305:306:99:6252,740,0 chrVIII 177867 . A G 4079.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=199;Dels=0.00;FS=2.671;HaplotypeScore=24.0696;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.812;QD=20.50;ReadPosRankSum=2.363;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4079,465,0 chrVIII 178041 . G T 2739 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.02;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2772,303,0 chrVIII 178104 . C T 2699 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.31;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2732,303,0 chrVIII 178170 . A T 2098 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=17.63;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2131,249,0 chrVIII 178171 . T G 2078 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=-0.144;QD=17.32;ReadPosRankSum=1.703;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2111,249,0 chrVIII 178172 . T C 2054 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=-0.644;QD=16.98;ReadPosRankSum=1.646;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2087,246,0 chrVIII 178173 . T A 2135 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=0.231;QD=17.64;ReadPosRankSum=1.703;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2168,249,0 chrVIII 178619 . G A 2396 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.48;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2429,267,0 chrVIII 178632 . A G 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.532;QD=19.38;ReadPosRankSum=2.360;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2165,255,0 chrVIII 178728 . C T 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=145;Dels=0.00;FS=3.454;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=0.409;QD=23.17;ReadPosRankSum=1.083;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3360,366,0 chrVIII 178752 . T C 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-0.247;QD=20.46;ReadPosRankSum=1.705;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2652,300,0 chrVIII 178767 . G A 2510 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.24;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2543,285,0 chrVIII 178799 . T C 2188 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=18.86;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2221,261,0 chrVIII 178843 . C T 2200 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.3408;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=22.00;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2233,246,0 chrVIII 178909 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.41;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2773,303,0 chrVIII 178971 . G A 2805 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.41;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2838,315,0 chrVIII 179026 . C T 2729 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=22.55;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2762,303,0 chrVIII 179071 . T A 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;MQRankSum=-0.220;QD=20.37;ReadPosRankSum=1.705;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2599,282,0 chrVIII 179085 . A G 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=3.479;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;MQRankSum=-0.750;QD=18.10;ReadPosRankSum=1.705;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2332,264,0 chrVIII 179088 . C T 2278 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.02;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=17.52;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2311,252,0 chrVIII 179112 . C T 2316 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.0532;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=18.38;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2349,261,0 chrVIII 179142 . T C 2293 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=18.20;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2326,267,0 chrVIII 179208 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.3166;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=24.82;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3450,375,0 chrVIII 179241 . C T 3092 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.07;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3125,342,0 chrVIII 179265 . C T 3339.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=22.56;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3339,375,0 chrVIII 179402 . A G 3108 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.6114;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.19;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3141,366,0 chrVIII 179409 . A C 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=165;Dels=0.00;FS=3.038;HaplotypeScore=7.7627;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-0.177;QD=18.40;ReadPosRankSum=2.404;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:2,159:165:99:3069,354,0 chrVIII 179452 . A G 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=168;Dels=0.00;FS=7.394;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-1.163;QD=21.12;ReadPosRankSum=2.420;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3548,402,0 chrVIII 179495 . A C 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=161;Dels=0.00;FS=3.495;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.893;QD=22.47;ReadPosRankSum=1.711;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3618,426,0 chrVIII 179572 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.70;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3291,375,0 chrVIII 179748 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3972,438,0 chrVIII 179871 . T A 3154 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.86;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3187,354,0 chrVIII 180734 . T C 4717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=272;Dels=0.00;FS=2.824;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-1.209;QD=17.34;ReadPosRankSum=2.404;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:2,269:272:99:4717,554,0 chrVIII 180743 . G C 4443.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=16.39;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:4443,524,0 chrVIII 180749 . G A 4535.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=8.7914;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=15.86;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:0,285:286:99:4535,498,0 chrVIII 180818 . C T 5154.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=18.95;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:5154,576,0 chrVIII 180918 . A G 4331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=10.8778;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=1.169;QD=17.61;ReadPosRankSum=1.648;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,245:246:99:4331,515,0 chrVIII 181049 . G A 4624.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=15.6697;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.41;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4624,507,0 chrVIII 181082 . A G 4231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=201;Dels=0.00;FS=3.164;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.508;QD=21.05;ReadPosRankSum=1.715;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4231,506,0 chrVIII 181132 . A G 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=3.873;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.656;QD=22.28;ReadPosRankSum=1.711;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3609,408,0 chrVIII 182092 . T C 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-0.728;QD=24.20;ReadPosRankSum=1.657;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3340,384,0 chrVIII 182216 . G A 3503.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.03;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3503,393,0 chrVIII 182246 . A C 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=165;Dels=0.00;FS=3.770;HaplotypeScore=12.5060;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.278;QD=18.22;ReadPosRankSum=1.711;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,161:165:99:3040,342,0 chrVIII 182297 . A G 2864 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=18.0535;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=15.65;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:2897,330,0 chrVIII 182330 . T C 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=-0.183;QD=16.30;ReadPosRankSum=1.691;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:2820,315,0 chrVIII 182333 . A T 2868 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=16.87;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2901,315,0 chrVIII 182354 . A G 2768 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=16.19;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:2801,336,0 chrVIII 182747 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.9255;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.75;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3459,387,0 chrVIII 182918 . T C 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=136;Dels=0.00;FS=2.981;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.615;QD=22.43;ReadPosRankSum=2.376;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:2,132:136:99:3083,354,0 chrVIII 183041 . C G 2844 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.76;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2877,333,0 chrVIII 183062 . A T 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=132;Dels=0.00;FS=5.928;HaplotypeScore=4.2996;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.191;QD=19.55;ReadPosRankSum=2.580;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2613,291,0 chrVIII 183664 . A T 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.8191;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.819;QD=20.25;ReadPosRankSum=1.709;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3071,336,0 chrVIII 183721 . T C 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=135;Dels=0.00;FS=8.860;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.994;QD=20.63;ReadPosRankSum=2.377;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2818,321,0 chrVIII 184104 . C T 2348 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.07;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2381,273,0 chrVIII 184122 . T A 2795 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.02;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2828,315,0 chrVIII 184258 . A G 1948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.422;DP=91;Dels=0.00;FS=8.177;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;MQRankSum=1.454;QD=21.41;ReadPosRankSum=3.736;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:5,86:91:99:1981,228,0 chrVIII 184374 . A G 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=135;Dels=0.00;FS=3.745;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.629;QD=21.82;ReadPosRankSum=1.706;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2979,342,0 chrVIII 186876 . C T 1793 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1826,198,0 chrVIII 189054 . T C 3843.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.02;FS=0.000;HaplotypeScore=30.8047;MLEAC=2;MLEAF=1.00;MQ=60.38;MQ0=0;QD=20.33;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3843,438,0 chrVIII 189143 . A G 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=225;Dels=0.00;FS=11.395;HaplotypeScore=14.8696;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-2.628;QD=18.62;ReadPosRankSum=2.897;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:3,221:225:99:4190,471,0 chrVIII 189187 . T C 5082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=249;Dels=0.00;FS=2.573;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-0.785;QD=20.41;ReadPosRankSum=2.972;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:3,244:249:99:5082,576,0 chrVIII 189188 . G A 5215.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=20.94;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5215,579,0 chrVIII 189221 . C G 3334.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.1793;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=17.27;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:3334,384,0 chrVIII 189257 . G A 3184 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=17.79;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3217,366,0 chrVIII 189314 . A G 5372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=263;Dels=0.00;FS=3.286;HaplotypeScore=18.9058;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=1.039;QD=20.43;ReadPosRankSum=1.719;SB=-3.055e+03 GT:AD:DP:GQ:PL 1/1:1,259:263:99:5372,597,0 chrVIII 190311 . C A 5666.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=24.6520;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=16.05;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,353:353:99:5666,621,0 chrVIII 190716 . C A 6143.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=15.0027;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.86;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:0,278:281:99:6143,672,0 chrVIII 191072 . T C 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.755;QD=21.00;ReadPosRankSum=1.715;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4241,486,0 chrVIII 191248 . A G 6413.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=29.3854;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.59;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:0,294:297:99:6413,773,0 chrVIII 192252 . G A 6804.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=20.0891;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,306:309:99:6804,750,0 chrVIII 192892 . C T 85.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.315;DP=234;Dels=0.00;FS=37.171;HaplotypeScore=12.8186;MLEAC=1;MLEAF=0.500;MQ=42.54;MQ0=18;MQRankSum=-7.665;QD=0.36;ReadPosRankSum=1.434;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:187,47:234:99:115,0,3618 chrVIII 192904 . A T 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;DP=239;Dels=0.00;FS=32.666;HaplotypeScore=11.0303;MLEAC=1;MLEAF=0.500;MQ=42.68;MQ0=18;MQRankSum=-8.115;QD=0.53;ReadPosRankSum=4.305;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:189,50:239:99:156,0,3691 chrVIII 192925 . C T 551.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.766;DP=283;Dels=0.00;FS=67.004;HaplotypeScore=20.7962;MLEAC=1;MLEAF=0.500;MQ=44.61;MQ0=13;MQRankSum=-6.012;QD=1.95;ReadPosRankSum=-1.602;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:209,74:283:99:581,0,3958 chrVIII 193003 . A G 3425.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.498;DP=306;Dels=0.00;FS=151.179;HaplotypeScore=13.6789;MLEAC=1;MLEAF=0.500;MQ=36.95;MQ0=20;MQRankSum=-4.777;QD=11.19;ReadPosRankSum=-0.419;SB=-8.190e+02 GT:AD:DP:GQ:PL 0/1:89,215:306:99:3425,0,1223 chrVIII 193096 . A G 3470.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.959;DP=273;Dels=0.00;FS=84.168;HaplotypeScore=1.7803;MLEAC=1;MLEAF=0.500;MQ=36.05;MQ0=25;MQRankSum=-4.267;QD=12.71;ReadPosRankSum=2.006;SB=-1.999e+03 GT:AD:DP:GQ:PL 0/1:60,213:273:99:3470,0,226 chrVIII 193099 . G A 3678.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.196;DP=268;Dels=0.00;FS=81.421;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=35.41;MQ0=25;MQRankSum=-4.009;QD=13.72;ReadPosRankSum=-0.063;SB=-2.185e+03 GT:AD:DP:GQ:PL 0/1:52,215:268:99:3678,0,197 chrVIII 193107 . C A 302.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.554;DP=264;Dels=0.00;FS=102.159;HaplotypeScore=4.2553;MLEAC=1;MLEAF=0.500;MQ=33.93;MQ0=25;MQRankSum=5.567;QD=1.14;ReadPosRankSum=-0.847;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:206,58:264:99:332,0,3039 chrVIII 193114 . T C 3291.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.277;DP=274;Dels=0.00;FS=112.709;HaplotypeScore=9.9206;MLEAC=1;MLEAF=0.500;MQ=33.42;MQ0=26;MQRankSum=-6.272;QD=12.01;ReadPosRankSum=0.100;SB=-2.097e+03 GT:AD:DP:GQ:PL 0/1:61,212:274:99:3291,0,387 chrVIII 193183 . T G 2257.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.036;DP=230;Dels=0.00;FS=186.803;HaplotypeScore=25.3911;MLEAC=1;MLEAF=0.500;MQ=36.20;MQ0=21;MQRankSum=-0.012;QD=9.81;ReadPosRankSum=-2.997;SB=-7.420e+02 GT:AD:DP:GQ:PL 0/1:70,160:230:99:2287,0,827 chrVIII 193224 . A G 106.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.499;DP=218;Dels=0.00;FS=109.183;HaplotypeScore=9.3547;MLEAC=1;MLEAF=0.500;MQ=41.70;MQ0=22;MQRankSum=-6.495;QD=0.49;ReadPosRankSum=-0.912;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:175,43:218:99:136,0,3418 chrVIII 193467 . C T 2384 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3117;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.38;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2417,276,0 chrVIII 193557 . A T 56.14 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.667;DP=78;Dels=0.03;FS=8.394;HaplotypeScore=66.1657;MLEAC=1;MLEAF=0.500;MQ=56.73;MQ0=0;MQRankSum=2.767;QD=0.72;ReadPosRankSum=2.124;SB=-6.969e+02 GT:AD:DP:GQ:PL 0/1:8,68:76:12:86,0,12 chrVIII 193626 . G C 2129 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=19.18;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2162,249,0 chrVIII 193633 . A G 2180 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.37;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2213,252,0 chrVIII 193751 . T G 1843 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.43;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1876,213,0 chrVIII 193797 . T C 2706 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=23.95;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2739,315,0 chrVIII 193831 . A G 3101 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=23.85;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3134,357,0 chrVIII 193875 . C A 2962 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.61;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2995,333,0 chrVIII 193965 . C T 2101 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=20.60;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2134,237,0 chrVIII 193991 . A G 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.16;MQ0=0;MQRankSum=-0.209;QD=18.21;ReadPosRankSum=1.702;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2163,255,0 chrVIII 194021 . T A 1863 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=18.26;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1896,210,0 chrVIII 194031 . C A 1825 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=42.72;MQ0=0;QD=16.59;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1858,204,0 chrVIII 194096 . T C 1939 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.9864;MLEAC=2;MLEAF=1.00;MQ=41.75;MQ0=10;MQRankSum=1.308;QD=13.01;ReadPosRankSum=1.682;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:4,145:149:99:1972,237,0 chrVIII 194188 . C T 1244 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=28;QD=12.82;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:15,82:97:99:1277,141,0 chrVIII 194191 . G A 1186 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=27;QD=12.89;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1219,138,0 chrVIII 194221 . G T 846 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.79;MQ0=28;QD=8.55;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:879,99,0 chrVIII 194266 . G A 285.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.843;DP=125;Dels=0.00;FS=85.061;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=15.51;MQ0=36;MQRankSum=-2.561;QD=2.28;ReadPosRankSum=-1.420;SB=-1.720e+02 GT:AD:DP:GQ:PL 0/1:39,85:125:99:315,0,112 chrVIII 194338 . A G 871 filter AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=16.09;MQ0=46;QD=5.51;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:1,155:158:99:904,102,0 chrVIII 194370 . C A 780.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.367;DP=169;Dels=0.00;FS=49.904;HaplotypeScore=9.9376;MLEAC=1;MLEAF=0.500;MQ=18.09;MQ0=37;MQRankSum=-1.036;QD=4.62;ReadPosRankSum=2.275;SB=-3.570e+02 GT:AD:DP:GQ:PL 0/1:22,147:169:95:810,0,95 chrVIII 194377 . C T 690.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;DP=167;Dels=0.01;FS=93.356;HaplotypeScore=7.4114;MLEAC=1;MLEAF=0.500;MQ=17.61;MQ0=37;MQRankSum=-2.038;QD=4.13;ReadPosRankSum=3.186;SB=-3.080e+02 GT:AD:DP:GQ:PL 0/1:28,136:166:99:720,0,276 chrVIII 194446 . T G 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.982;DP=152;Dels=0.00;FS=135.896;HaplotypeScore=5.4113;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=26;MQRankSum=-4.446;QD=0.32;ReadPosRankSum=-0.780;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,37:152:78:78,0,1929 chrVIII 194487 . A G 2251 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.639;DP=129;Dels=0.00;FS=18.204;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=29;MQRankSum=2.805;QD=17.45;ReadPosRankSum=-0.681;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:16,111:129:99:2284,217,0 chrVIII 194575 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=44.04;MQ0=2;QD=15.84;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,177:178:99:2852,312,0 chrVIII 194611 . G C 3733.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=18.2168;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=18.85;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,194:198:99:3733,417,0 chrVIII 194824 . T C 3577.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.9373;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.68;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3577,408,0 chrVIII 194951 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.301;DP=156;Dels=0.00;FS=4.901;HaplotypeScore=13.0677;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=1.145;QD=21.99;ReadPosRankSum=3.357;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:4,151:156:99:3431,396,0 chrVIII 195005 . A G 3298.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.73;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3298,375,0 chrVIII 195121 . T C 3274.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=22.27;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3274,375,0 chrVIII 195157 . C A 2970 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=21.68;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3003,333,0 chrVIII 195175 . C G 3004 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=21.61;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3037,348,0 chrVIII 195188 . G A 2932 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=20.50;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2965,327,0 chrVIII 195216 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.4968;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.35;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3085,339,0 chrVIII 195313 . G A 2765 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.60;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2798,315,0 chrVIII 195601 . G A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.52;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3880,435,0 chrVIII 195739 . G A 3344.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.22;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3344,372,0 chrVIII 196024 . T G 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.001;QD=21.61;ReadPosRankSum=1.655;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3889,470,0 chrVIII 196160 . G A 4972.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=17.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-2.669e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4972,552,0 chrVIII 196468 . A G 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.743;DP=145;Dels=0.00;FS=6.111;HaplotypeScore=15.1569;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.618;QD=21.96;ReadPosRankSum=2.938;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3217,369,0 chrVIII 196532 . A G 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=140;Dels=0.00;FS=6.100;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-2.184;QD=22.19;ReadPosRankSum=2.949;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:3,134:140:99:3140,351,0 chrVIII 197020 . A G 3165 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.7235;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.96;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3198,369,0 chrVIII 197728 . T A 3779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=166;Dels=0.00;FS=4.420;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.021;QD=22.77;ReadPosRankSum=1.669;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3779,417,0 chrVIII 199007 . A G 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-0.800;QD=19.06;ReadPosRankSum=1.660;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2796,315,0 chrVIII 199017 . C A 2929 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.20;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2962,327,0 chrVIII 199025 . A G 2626 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=18.62;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2659,303,0 chrVIII 199736 . A T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=23.72;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3771,423,0 chrVIII 199794 . T C 4668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=202;Dels=0.00;FS=2.915;HaplotypeScore=11.1837;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.568;QD=23.11;ReadPosRankSum=2.413;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:4668,528,0 chrVIII 199968 . C T 3890.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.2524;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.26;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3890,426,0 chrVIII 199973 . T G 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=3.816;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=-0.823;QD=19.51;ReadPosRankSum=1.713;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3570,411,0 chrVIII 200102 . C T 3123 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.1435;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.15;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3156,345,0 chrVIII 200228 . T C 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=157;Dels=0.00;FS=2.943;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.149;QD=22.09;ReadPosRankSum=2.386;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:3468,396,0 chrVIII 200796 . T G 3983.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.02;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3983,456,0 chrVIII 201335 . G A 2878 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.2332;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.48;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2911,321,0 chrVIII 201548 . G A 2326 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.49;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2359,261,0 chrVIII 201705 . C T 2463 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.70;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2496,279,0 chrVIII 201817 . G A 2608 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.03;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2641,291,0 chrVIII 201877 . C T 2668 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.61;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2701,294,0 chrVIII 202007 . T A 3090 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.95;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3123,342,0 chrVIII 202037 . G A 2497 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.47;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2530,282,0 chrVIII 202048 . C T 2602 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.6483;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=18.86;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2635,291,0 chrVIII 202143 . T G 2746 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.6616;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=18.94;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2779,330,0 chrVIII 202145 . G A 2942 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.4503;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.01;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2975,330,0 chrVIII 202307 . C T 4289.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.10;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4289,471,0 chrVIII 202480 . T C 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=173;Dels=0.00;FS=5.113;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.725;QD=21.45;ReadPosRankSum=1.712;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3711,440,0 chrVIII 202550 . C T 3773.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=8.1426;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.19;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3773,414,0 chrVIII 202635 . T C 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.241;QD=23.54;ReadPosRankSum=1.684;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3390,381,0 chrVIII 202737 . A C 2763 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.46;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2796,324,0 chrVIII 202757 . G A 3151 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.34;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3184,345,0 chrVIII 202824 . A T 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.882;QD=21.76;ReadPosRankSum=1.711;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3569,396,0 chrVIII 202861 . C T 3732.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=24.39;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3732,402,0 chrVIII 203086 . T C 3926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=178;Dels=0.00;FS=3.032;HaplotypeScore=12.9784;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.881;QD=22.06;ReadPosRankSum=2.352;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3926,438,0 chrVIII 203151 . A G 4697.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.47;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4697,551,0 chrVIII 203186 . G A 4538.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.7432;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.04;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4538,492,0 chrVIII 203233 . C G 3588.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=19.29;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3588,411,0 chrVIII 203255 . T G 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=177;Dels=0.00;FS=2.979;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;MQRankSum=-1.193;QD=17.69;ReadPosRankSum=2.422;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3164,357,0 chrVIII 203274 . C A 3046 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;QD=17.61;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3079,333,0 chrVIII 203292 . T C 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=3.217;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;MQRankSum=-0.544;QD=14.82;ReadPosRankSum=1.692;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:2596,297,0 chrVIII 203300 . C G 2446 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=14.82;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:2479,282,0 chrVIII 203310 . G A 2286 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=14.94;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2319,258,0 chrVIII 203446 . T C 4451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=203;Dels=0.00;FS=3.511;HaplotypeScore=5.8554;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;MQRankSum=-1.200;QD=21.93;ReadPosRankSum=1.698;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4451,507,0 chrVIII 203456 . C G 4035.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=20.59;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4035,459,0 chrVIII 203641 . A G 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.229;QD=21.66;ReadPosRankSum=1.681;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3001,351,0 chrVIII 204117 . A C 3618.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3618,417,0 chrVIII 204484 . A G 3525.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.60;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3525,405,0 chrVIII 204531 . C T 4915.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.65;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4915,543,0 chrVIII 204656 . C T 3768.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=15.0638;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.56;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3768,411,0 chrVIII 204704 . T C 4477.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=15.9828;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.39;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4477,525,0 chrVIII 204882 . C T 6006.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.01;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:0,259:261:99:6006,660,0 chrVIII 205191 . A C 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=175;Dels=0.00;FS=3.190;HaplotypeScore=19.3182;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.552;QD=22.32;ReadPosRankSum=1.692;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3906,456,0 chrVIII 205278 . A T 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=174;Dels=0.00;FS=10.062;HaplotypeScore=15.5274;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.690;QD=22.97;ReadPosRankSum=2.912;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3996,441,0 chrVIII 205476 . C A 3639.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.5457;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.79;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3639,405,0 chrVIII 205749 . C G 2394 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.7912;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=17.60;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,132:136:99:2427,291,0 chrVIII 205941 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=3.287;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.428;QD=22.29;ReadPosRankSum=1.711;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3611,429,0 chrVIII 206460 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.7997;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.37;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2807,309,0 chrVIII 206785 . T C 4887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=217;Dels=0.00;FS=5.452;HaplotypeScore=15.1829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.097;QD=22.52;ReadPosRankSum=2.958;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:3,214:217:99:4887,555,0 chrVIII 207052 . T A 5617.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5617,621,0 chrVIII 207624 . C T 4373.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.5922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4373,492,0 chrVIII 208502 . C A 5272.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=18.6844;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.18;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5272,582,0 chrVIII 208949 . T A 5683.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=18.5070;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.61;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:5683,615,0 chrVIII 209037 . C T 4181.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.97;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4181,459,0 chrVIII 209414 . A T 2290 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7518;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.81;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2323,258,0 chrVIII 210315 . T A 2608 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=23.29;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2641,294,0 chrVIII 210621 . A G 1892 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1925,219,0 chrVIII 210710 . A T 1588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.855;DP=79;Dels=0.00;FS=4.505;HaplotypeScore=7.3266;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.241;QD=20.10;ReadPosRankSum=-0.373;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1621,177,0 chrVIII 211042 . C T 1932 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.41;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:1965,213,0 chrVIII 212293 . C T 1689 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=4;QD=20.11;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1722,186,0 chrVIII 212499 . C T 567 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.34;MQ0=31;QD=9.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:66:600,66,0 chrVIII 212509 . G A 426 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.50;MQ0=29;QD=8.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:51:459,51,0 chrVIII 212536 . C T 78.51 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.94;MQ0=40;QD=1.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:12:111,12,0 chrVIII 212556 . C T 70.51 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.89;MQ0=50;QD=1.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:12:103,12,0 chrVIII 216123 . C T 1621 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=30;QD=17.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1654,177,0 chrVIII 216235 . C T 3401.01 filter AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=42.97;MQ0=8;QD=21.53;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3401,381,0 chrVIII 216338 . C G 3009 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=23.15;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3042,345,0 chrVIII 216563 . T C 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=3.109;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.681;QD=22.96;ReadPosRankSum=1.713;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4110,468,0 chrVIII 216707 . T C 2444 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2477,285,0 chrVIII 216814 . T C 2647 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.05;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,127:132:99:2680,318,0 chrVIII 217047 . C T 2665 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9783;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2698,294,0 chrVIII 217505 . A G 4763.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.71;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4763,560,0 chrVIII 217526 . C A 4588.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=2.6141;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.57;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4588,504,0 chrVIII 217536 . A G 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.379;DP=215;Dels=0.00;FS=8.270;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.101;QD=18.72;ReadPosRankSum=3.395;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:4,211:215:99:4025,453,0 chrVIII 217604 . G A 4651.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.84;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4651,507,0 chrVIII 218189 . T C 4942.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=247.9683;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=16.70;SB=-3.078e+03 GT:AD:DP:GQ:PL 1/1:0,296:296:99:4942,578,0 chrVIII 219407 . T C 4180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=196;Dels=0.00;FS=3.285;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.697;QD=21.33;ReadPosRankSum=1.679;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4180,494,0 chrVIII 220155 . T C 2847 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2880,327,0 chrVIII 223791 . T C 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0656;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.763;QD=21.24;ReadPosRankSum=2.377;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:2964,336,0 chrVIII 224621 . G C 2044 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2077,246,0 chrVIII 224759 . G A 2291 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2324,258,0 chrVIII 224795 . T C 2195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.231;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.012;QD=21.52;ReadPosRankSum=1.664;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2228,255,0 chrVIII 225748 . A G 3544.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3544,408,0 chrVIII 226266 . A G 5564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=230;Dels=0.00;FS=3.470;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.641;QD=24.19;ReadPosRankSum=1.687;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:1,228:230:99:5564,621,0 chrVIII 226755 . G A 3888.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.13;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3888,438,0 chrVIII 227192 . T G 5074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=222;Dels=0.00;FS=6.081;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-1.940;QD=22.86;ReadPosRankSum=2.950;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:3,216:222:99:5074,573,0 chrVIII 227323 . T G 2436 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.13;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2469,291,0 chrVIII 227343 . T C 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=130;Dels=0.00;FS=3.714;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=1.296;QD=21.25;ReadPosRankSum=1.678;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,126:130:99:2795,315,0 chrVIII 227411 . G A 3632.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=22.56;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3632,399,0 chrVIII 227429 . A G 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=0.532;QD=19.66;ReadPosRankSum=1.709;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3041,342,0 chrVIII 227444 . T C 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=158;Dels=0.00;FS=3.661;HaplotypeScore=7.6480;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.241;QD=17.90;ReadPosRankSum=1.666;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2861,344,0 chrVIII 227519 . A G 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=164;Dels=0.00;FS=4.387;HaplotypeScore=12.0744;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.513;QD=20.90;ReadPosRankSum=1.711;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3428,410,0 chrVIII 227951 . A C 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.545;DP=167;Dels=0.00;FS=3.477;HaplotypeScore=8.2706;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=0.653;QD=18.23;ReadPosRankSum=0.529;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3077,331,0 chrVIII 227964 . G A 3656.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.20;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3656,393,0 chrVIII 228006 . G C 3650.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=18.72;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3650,420,0 chrVIII 228015 . A G 3664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=0.852;QD=18.89;ReadPosRankSum=1.695;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:1,189:194:99:3664,414,0 chrVIII 228402 . G A 3829.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=15.0027;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.93;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,161:167:99:3829,414,0 chrVIII 228507 . G A 4316.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.3541;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.69;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4316,483,0 chrVIII 228696 . G C 3318.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.6008;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.40;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3318,398,0 chrVIII 228831 . G C 2154 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1696;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=17.95;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2187,258,0 chrVIII 228837 . T C 2086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=114;Dels=0.00;FS=9.383;HaplotypeScore=1.8401;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;MQRankSum=-1.717;QD=18.30;ReadPosRankSum=2.939;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2119,246,0 chrVIII 228862 . A G 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=97;Dels=0.00;FS=3.055;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.12;MQ0=0;MQRankSum=-1.587;QD=16.46;ReadPosRankSum=2.297;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1630,189,0 chrVIII 228880 . G A 1730 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;QD=16.96;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1763,192,0 chrVIII 228881 . C T 1721 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;QD=16.87;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1754,192,0 chrVIII 228903 . G A 1785 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=17.50;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1818,204,0 chrVIII 229020 . C T 2544 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=22.92;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2577,285,0 chrVIII 229142 . T C 1850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.135;DP=94;Dels=0.00;FS=7.056;HaplotypeScore=6.6104;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=-0.328;QD=19.68;ReadPosRankSum=2.397;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1883,219,0 chrVIII 229184 . T A 1374 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.0778;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=16.76;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1407,156,0 chrVIII 229218 . A T 460.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.550;DP=125;Dels=0.00;FS=0.723;HaplotypeScore=43.2356;MLEAC=1;MLEAF=0.500;MQ=50.61;MQ0=0;MQRankSum=4.386;QD=3.68;ReadPosRankSum=0.659;SB=-2.210e+02 GT:AD:DP:GQ:PL 0/1:63,62:125:99:490,0,259 chrVIII 229265 . G C 2391 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.97;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2424,288,0 chrVIII 229427 . T C 3512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=159;Dels=0.00;FS=6.103;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;MQRankSum=0.487;QD=22.09;ReadPosRankSum=2.419;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3512,396,0 chrVIII 229448 . T C 3611.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=21.62;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3611,411,0 chrVIII 229583 . T C 3721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=170;Dels=0.00;FS=6.525;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;MQRankSum=-0.865;QD=21.89;ReadPosRankSum=2.391;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3721,420,0 chrVIII 229613 . T C 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.956;DP=161;Dels=0.00;FS=10.143;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;MQRankSum=-1.321;QD=21.95;ReadPosRankSum=2.931;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:3,157:161:99:3534,414,0 chrVIII 229640 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=22.35;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3330,369,0 chrVIII 230165 . G A 3573.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.76;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3573,393,0 chrVIII 230196 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.9447;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.01;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3659,399,0 chrVIII 230282 . C T 4381.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.07;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4381,474,0 chrVIII 230333 . A G 4106.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4106,480,0 chrVIII 230390 . A G 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=192;Dels=0.00;FS=3.641;HaplotypeScore=15.7004;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-0.346;QD=21.65;ReadPosRankSum=1.676;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:1,184:192:99:4157,477,0 chrVIII 230432 . T C 5222.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.80;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5222,597,0 chrVIII 230647 . G T 5291.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=19.2561;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.52;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5291,576,0 chrVIII 230731 . C T 4642.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.75;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,200:204:99:4642,504,0 chrVIII 230863 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.3473;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.48;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3844,426,0 chrVIII 230894 . A G 3794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=176;Dels=0.01;FS=3.490;HaplotypeScore=11.2104;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.370;QD=21.56;ReadPosRankSum=1.692;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3794,435,0 chrVIII 231163 . C G 3537.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=16.3084;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.42;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,146:151:99:3537,396,0 chrVIII 231221 . G A 4522.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=18.6086;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.80;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4522,498,0 chrVIII 231290 . A G 3504.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.76;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3504,399,0 chrVIII 231411 . T G 4073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=182;Dels=0.00;FS=11.261;HaplotypeScore=16.0960;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.657;QD=22.38;ReadPosRankSum=2.905;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:3,176:182:99:4073,468,0 chrVIII 231446 . A C 3467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.972;QD=21.14;ReadPosRankSum=1.711;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3467,413,0 chrVIII 231745 . A G 4293.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.47;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4293,495,0 chrVIII 231758 . T G 4246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-1.084;QD=20.81;ReadPosRankSum=1.681;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4246,483,0 chrVIII 231830 . T C 2668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=3.177;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.899;QD=20.06;ReadPosRankSum=1.680;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2701,303,0 chrVIII 232078 . C A 4310.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.35;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4310,468,0 chrVIII 232258 . T C 4754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=17.3679;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.890;QD=21.71;ReadPosRankSum=1.700;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:4754,546,0 chrVIII 232321 . T C 6510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=11.9337;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.287;QD=23.17;ReadPosRankSum=1.720;SB=-3.269e+03 GT:AD:DP:GQ:PL 1/1:1,279:281:99:6510,747,0 chrVIII 232438 . C T 5730.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=19.6923;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.30;SB=-2.795e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:5730,625,0 chrVIII 232525 . C T 6718.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=23.2530;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.32;SB=-3.535e+03 GT:AD:DP:GQ:PL 1/1:0,301:301:99:6718,747,0 chrVIII 232747 . C T 5110.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=17.2536;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.02;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5110,570,0 chrVIII 233140 . T C 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=181;Dels=0.00;FS=4.424;HaplotypeScore=13.6840;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.405;QD=20.89;ReadPosRankSum=1.597;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3781,449,0 chrVIII 233357 . A C 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=84;Dels=0.00;FS=8.644;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;MQRankSum=0.074;QD=18.48;ReadPosRankSum=2.123;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:2,81:84:99:1585,186,0 chrVIII 233361 . G A 1524 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.02;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=17.93;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1557,171,0 chrVIII 233475 . T A 2534 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=23.68;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2567,282,0 chrVIII 233495 . C A 2411 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=20.78;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2444,270,0 chrVIII 233526 . T C 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;MQRankSum=-1.112;QD=14.12;ReadPosRankSum=2.413;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:2,134:136:99:1953,228,0 chrVIII 233542 . G A 2024 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.79;MQ0=0;QD=12.89;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2057,225,0 chrVIII 233556 . A C 1895 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=11.63;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,163:163:99:1928,219,0 chrVIII 233563 . G A 1851 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.62;MQ0=0;QD=10.70;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:1884,210,0 chrVIII 233575 . C T 2078 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;QD=10.82;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:2111,231,0 chrVIII 233885 . T C 4533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=209;Dels=0.00;FS=12.035;HaplotypeScore=17.6309;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.240;QD=21.69;ReadPosRankSum=2.927;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:3,203:209:99:4533,507,0 chrVIII 234380 . C T 5939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=17.8225;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.582;QD=23.20;ReadPosRankSum=1.718;SB=-3.018e+03 GT:AD:DP:GQ:PL 1/1:1,253:256:99:5939,651,0 chrVIII 234673 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.63;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3528,390,0 chrVIII 234904 . C T 1727 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=18.37;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1760,192,0 chrVIII 234919 . A T 1915 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=20.16;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1948,213,0 chrVIII 234994 . T C 3320.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.38;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3320,381,0 chrVIII 235033 . C A 3162 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=21.66;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3195,357,0 chrVIII 235081 . A G 2349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.664;DP=157;Dels=0.00;FS=21.729;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=43.62;MQ0=0;MQRankSum=-1.165;QD=14.96;ReadPosRankSum=3.754;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:5,152:157:99:2382,270,0 chrVIII 235096 . G A 2330 SnpCluster AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=39.89;MQ0=0;QD=14.21;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2363,264,0 chrVIII 235097 . G A 2357 SnpCluster AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=0;QD=14.64;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2390,264,0 chrVIII 235099 . G T 2336 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.74;MQ0=0;QD=14.33;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2369,264,0 chrVIII 235129 . C A 3087 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.5554;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;QD=15.91;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3120,345,0 chrVIII 235192 . C T 4041.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.3246;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.83;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4041,453,0 chrVIII 235729 . T C 5651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=276;Dels=0.00;FS=3.339;HaplotypeScore=16.9318;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.681;QD=20.47;ReadPosRankSum=1.719;SB=-3.054e+03 GT:AD:DP:GQ:PL 1/1:1,273:276:99:5651,662,0 chrVIII 235864 . C A 6837.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=22.3964;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.34;SB=-3.025e+03 GT:AD:DP:GQ:PL 1/1:0,306:306:99:6837,774,0 chrVIII 235973 . T G 5485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.359;DP=295;Dels=0.00;FS=5.224;HaplotypeScore=21.5887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-2.176;QD=18.59;ReadPosRankSum=3.431;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:4,286:294:99:5485,639,0 chrVIII 236137 . T C 9641.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=436;Dels=0.00;FS=0.000;HaplotypeScore=40.3332;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.580;QD=22.11;ReadPosRankSum=1.652;SB=-4.225e+03 GT:AD:DP:GQ:PL 1/1:1,433:436:99:9641,1116,0 chrVIII 236191 . G A 10681.01 filter AC=2;AF=1.00;AN=2;DP=472;Dels=0.00;FS=0.000;HaplotypeScore=25.4272;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.63;SB=-4.743e+03 GT:AD:DP:GQ:PL 1/1:0,470:472:99:10681,1168,0 chrVIII 236618 . T C 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=144;Dels=0.00;FS=9.686;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-0.601;QD=21.16;ReadPosRankSum=2.895;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3080,360,0 chrVIII 236813 . G A 1441 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=117.0791;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=20.30;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1474,159,0 chrVIII 237138 . T C 849 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=23.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:99:882,102,0 chrVIII 237146 . G A 839 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=22.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:37:93:872,93,0 chrVIII 237318 . T C 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-0.992;QD=21.17;ReadPosRankSum=1.698;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2213,246,0 chrVIII 237328 . C T 2164 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6932;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.61;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2197,246,0 chrVIII 237556 . T C 2620 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.7022;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.65;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2653,303,0 chrVIII 237696 . T G 1469 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5326;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=17.91;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1502,174,0 chrVIII 237787 . C G 723 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=13.64;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:90:756,90,0 chrVIII 237971 . G T 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.65;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,44:44:12:105,12,0 chrVIII 237972 . A G 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.65;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,44:44:12:105,12,0 chrVIII 237974 . A G 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.69;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,44:44:12:107,12,0 chrVIII 237992 . T C 96.26 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.1980;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;QD=2.09;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,40:46:15:129,15,0 chrVIII 238024 . C T 767 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.5739;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=0;QD=10.51;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:90:800,90,0 chrVIII 238170 . T C 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.195;DP=133;Dels=0.00;FS=5.070;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=-0.929;QD=22.50;ReadPosRankSum=3.195;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:4,129:133:99:3026,339,0 chrVIII 238456 . A G 4212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.754;DP=202;Dels=0.00;FS=9.772;HaplotypeScore=11.3463;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.322;QD=20.85;ReadPosRankSum=2.935;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:3,197:202:99:4212,500,0 chrVIII 238475 . C T 4363.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.33;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4363,477,0 chrVIII 238539 . A G 3587.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=18.5430;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.73;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3587,408,0 chrVIII 238621 . C T 3377.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.79;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3377,372,0 chrVIII 238746 . C G 2481 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.7517;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.85;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2514,279,0 chrVIII 238812 . A C 2279 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.56;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2312,264,0 chrVIII 238996 . C G 1632 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=14.3461;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=15.84;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1665,195,0 chrVIII 239033 . G T 2663 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.02;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2696,294,0 chrVIII 239069 . T C 2615 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.81;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2648,303,0 chrVIII 239223 . C T 2441 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.9573;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=14.98;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2474,270,0 chrVIII 239430 . C T 4880.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.92;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4880,543,0 chrVIII 239745 . A G 4320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.8547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.191;QD=20.97;ReadPosRankSum=1.681;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4320,495,0 chrVIII 240144 . C T 3678.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=15.6034;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.02;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3678,414,0 chrVIII 241470 . C A 2690 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.23;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2723,297,0 chrVIII 241642 . A G 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=158;Dels=0.00;FS=3.386;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.651;QD=22.88;ReadPosRankSum=1.688;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3615,429,0 chrVIII 242062 . C T 106.26 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=100.7124;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=0.91;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:15:139,15,0 chrVIII 242260 . T C 2540 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.82;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2573,297,0 chrVIII 242300 . G A 2157 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=18.59;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2190,246,0 chrVIII 242304 . G A 2157 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=18.44;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2190,240,0 chrVIII 242526 . T C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.172;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=1.100;QD=22.80;ReadPosRankSum=1.707;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3180,354,0 chrVIII 242572 . G T 3162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=15.3443;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.819;QD=21.22;ReadPosRankSum=1.709;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3195,357,0 chrVIII 242816 . A C 4929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=7.4106;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.717;QD=20.71;ReadPosRankSum=1.615;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:1,236:238:99:4929,570,0 chrVIII 243067 . A G 5139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=13.2322;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.600;QD=21.78;ReadPosRankSum=1.703;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:5139,611,0 chrVIII 243241 . A G 4225.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.7983;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.78;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4225,480,0 chrVIII 243316 . C T 4509.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.9672;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.43;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4509,498,0 chrVIII 243508 . G C 5604.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=18.3909;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.81;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:5604,639,0 chrVIII 243772 . G A 5237.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=19.2255;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.70;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5237,588,0 chrVIII 243836 . C T 5445.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.59;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,238:241:99:5445,597,0 chrVIII 244248 . A C 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=161;Dels=0.00;FS=3.791;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.921;QD=22.08;ReadPosRankSum=1.710;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,157:161:99:3555,408,0 chrVIII 244339 . C T 3151 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0427;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3184,357,0 chrVIII 244449 . A T 4295.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.7445;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.14;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4295,471,0 chrVIII 244894 . T C 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=181;Dels=0.00;FS=4.399;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.881;QD=21.48;ReadPosRankSum=1.713;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:3887,447,0 chrVIII 244931 . C T 3551.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.7195;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.62;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3551,387,0 chrVIII 245505 . C T 3021 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=23.24;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3054,336,0 chrVIII 245608 . C T 2302 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=20.02;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2335,261,0 chrVIII 245614 . A T 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=2.957;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;MQRankSum=-1.109;QD=20.76;ReadPosRankSum=2.352;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2130,237,0 chrVIII 245627 . T C 247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.739;DP=86;Dels=0.00;FS=13.079;HaplotypeScore=123.4891;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=2.298;QD=2.87;ReadPosRankSum=-6.813;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:58,24:86:30:280,30,0 chrVIII 245718 . A T 2128 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=20.27;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2161,237,0 chrVIII 245722 . A T 2147 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=20.64;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2180,240,0 chrVIII 245732 . C T 2140 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6121;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=18.94;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2173,240,0 chrVIII 245779 . A G 2252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=132;Dels=0.00;FS=3.077;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=0;MQRankSum=-0.577;QD=17.06;ReadPosRankSum=1.706;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2285,258,0 chrVIII 245791 . T A 2086 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=42.81;MQ0=0;QD=16.96;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2119,237,0 chrVIII 245815 . A C 1785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=4.232;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;MQRankSum=-0.229;QD=16.84;ReadPosRankSum=1.699;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1818,210,0 chrVIII 245827 . G A 1552 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;QD=14.78;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1585,174,0 chrVIII 245841 . A T 1494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.751;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.22;MQ0=0;MQRankSum=-1.392;QD=14.65;ReadPosRankSum=1.698;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1527,171,0 chrVIII 245849 . G A 1519 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=15.66;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1552,171,0 chrVIII 246166 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.17;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2715,303,0 chrVIII 246180 . C T 2792 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.09;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2825,309,0 chrVIII 246740 . C G 4869.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=20.7821;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.65;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,211:215:99:4869,552,0 chrVIII 246987 . T C 4945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=240;Dels=0.00;FS=8.501;HaplotypeScore=18.4903;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.555;QD=20.60;ReadPosRankSum=2.377;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:2,234:240:99:4945,587,0 chrVIII 247269 . C T 4268.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=15.4639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4268,477,0 chrVIII 247398 . C T 4147.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.5922;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=21.38;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4147,465,0 chrVIII 247659 . C T 3315.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.35;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3315,363,0 chrVIII 247932 . A C 4009.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.3948;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.40;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4009,474,0 chrVIII 248016 . T C 2840 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.19;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2873,324,0 chrVIII 248019 . C T 2949 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.84;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2982,321,0 chrVIII 248322 . T C 2797 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.4022;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=22.93;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2830,321,0 chrVIII 248349 . T A 2642 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.02;FS=0.000;HaplotypeScore=9.9203;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.66;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2675,300,0 chrVIII 248390 . C T 2112 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.02;FS=0.000;HaplotypeScore=119.2760;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=17.17;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2145,234,0 chrVIII 248547 . C T 1944 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=23.42;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1977,222,0 chrVIII 248565 . A G 1767 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=20.55;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1800,207,0 chrVIII 248571 . G A 1762 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=20.73;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1795,198,0 chrVIII 248649 . C T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.79;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3290,363,0 chrVIII 249226 . T C 2621 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.80;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2654,300,0 chrVIII 249527 . A G 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=3.967;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.531;QD=22.92;ReadPosRankSum=1.692;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3942,447,0 chrVIII 249854 . T C 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=170;Dels=0.00;FS=7.025;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.340;QD=21.90;ReadPosRankSum=2.377;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3723,411,0 chrVIII 249965 . G A 3341.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.86;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3341,363,0 chrVIII 250096 . C T 3118 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.43;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3151,348,0 chrVIII 250404 . T C 2418 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2451,282,0 chrVIII 250559 . G A 4006.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=15.9514;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4006,447,0 chrVIII 250612 . A C 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=155;Dels=0.00;FS=3.785;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.306;QD=22.54;ReadPosRankSum=1.687;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3493,396,0 chrVIII 250766 . G T 4274.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.74;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4274,480,0 chrVIII 250913 . A T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3331,372,0 chrVIII 250961 . T C 3021 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.9250;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.58;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3054,348,0 chrVIII 251021 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.3864;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3330,360,0 chrVIII 251694 . A G 3599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.457;QD=21.68;ReadPosRankSum=1.648;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3599,417,0 chrVIII 252153 . T C 3085 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3118,354,0 chrVIII 252238 . T C 3538.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3538,402,0 chrVIII 252321 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3196,351,0 chrVIII 252398 . A G 2683 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.81;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2716,318,0 chrVIII 252950 . A G 88.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.447;DP=596;Dels=0.00;FS=33.688;HaplotypeScore=22.5964;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-1.493;QD=0.15;ReadPosRankSum=-3.240;SB=-5.410e+02 GT:AD:DP:GQ:PL 0/1:575,21:596:99:118,0,1948 chrVIII 252956 . C G 7647.01 filter AC=2;AF=1.00;AN=2;DP=610;Dels=0.00;FS=0.000;HaplotypeScore=12.7031;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=12.54;SB=-6.186e+03 GT:AD:DP:GQ:PL 1/1:0,609:610:99:7647,928,0 chrVIII 252968 . C G 8358.01 filter AC=2;AF=1.00;AN=2;DP=589;Dels=0.00;FS=0.000;HaplotypeScore=20.7462;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=14.19;SB=-6.954e+03 GT:AD:DP:GQ:PL 1/1:0,580:589:99:8358,986,0 chrVIII 253019 . C T 7341.01 filter AC=2;AF=1.00;AN=2;DP=517;Dels=0.00;FS=0.000;HaplotypeScore=32.6809;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=14.20;SB=-4.328e+03 GT:AD:DP:GQ:PL 1/1:0,514:517:99:7341,819,0 chrVIII 253492 . A C 1935 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.16;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1968,231,0 chrVIII 253745 . T A 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.005;DP=144;Dels=0.00;FS=3.041;HaplotypeScore=5.0559;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.303;QD=23.81;ReadPosRankSum=-1.369;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3429,367,0 chrVIII 253999 . T C 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.832;QD=21.06;ReadPosRankSum=1.705;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2708,309,0 chrVIII 254158 . A T 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=103;Dels=0.00;FS=2.934;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.542;QD=22.73;ReadPosRankSum=2.306;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2374,261,0 chrVIII 254195 . C T 2701 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.32;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2734,306,0 chrVIII 254246 . A C 2922 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.97;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2955,336,0 chrVIII 254330 . T C 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.8979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.309;QD=21.28;ReadPosRankSum=1.694;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,89:92:99:1991,225,0 chrVIII 254816 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3264,387,0 chrVIII 255011 . A G 3079 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3112,366,0 chrVIII 255407 . A G 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=126;Dels=0.00;FS=6.058;HaplotypeScore=15.2291;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.508;QD=21.63;ReadPosRankSum=2.750;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:3,122:126:99:2758,306,0 chrVIII 255648 . A G 2824 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.07;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2857,342,0 chrVIII 256019 . A G 3651.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.82;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3651,417,0 chrVIII 256385 . T G 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=137;Dels=0.00;FS=9.226;HaplotypeScore=14.3444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.994;QD=19.55;ReadPosRankSum=2.359;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:2,133:137:99:2711,306,0 chrVIII 256927 . C T 3782.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3782,411,0 chrVIII 256971 . A G 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.184;QD=22.20;ReadPosRankSum=1.708;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3163,366,0 chrVIII 257268 . A G 2386 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.2874;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.94;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2419,276,0 chrVIII 257295 . T C 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=3.259;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.572;QD=22.01;ReadPosRankSum=1.700;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2410,270,0 chrVIII 257670 . G A 3320.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3320,366,0 chrVIII 257823 . G A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.66;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3526,387,0 chrVIII 257937 . C T 2893 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.92;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2926,324,0 chrVIII 258019 . C T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3509,381,0 chrVIII 258412 . A G 2716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=132;Dels=0.00;FS=2.585;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=-0.715;QD=20.58;ReadPosRankSum=2.870;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:3,128:132:99:2749,312,0 chrVIII 258421 . A G 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-0.977;QD=20.21;ReadPosRankSum=1.706;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2721,309,0 chrVIII 258469 . T C 2082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=122;Dels=0.00;FS=3.039;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;MQRankSum=-0.734;QD=17.07;ReadPosRankSum=2.346;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:2,117:122:99:2115,234,0 chrVIII 258472 . G A 2161 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.8136;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=18.47;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2194,243,0 chrVIII 258556 . A G 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=141;Dels=0.00;FS=3.038;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.167;QD=21.80;ReadPosRankSum=2.415;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3107,366,0 chrVIII 258587 . C T 2871 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.59;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2904,318,0 chrVIII 258754 . A G 2839 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3213;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.03;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2872,333,0 chrVIII 259012 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.22;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3144,351,0 chrVIII 259045 . A G 2705 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=20.34;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2738,315,0 chrVIII 259233 . G A 2328 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.60;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2361,258,0 chrVIII 259570 . T C 2106 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.65;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2139,249,0 chrVIII 259588 . T C 2028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=102;Dels=0.00;FS=2.930;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.232;QD=19.88;ReadPosRankSum=2.377;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:2,99:102:99:2061,237,0 chrVIII 259960 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=144;Dels=0.00;FS=6.490;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.627;QD=22.93;ReadPosRankSum=2.415;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3302,372,0 chrVIII 260343 . T C 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.9273;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.192;QD=21.35;ReadPosRankSum=1.706;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2937,348,0 chrVIII 261043 . G A 3516.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3516,390,0 chrVIII 261465 . C A 4066.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.3919;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.22;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4066,438,0 chrVIII 261638 . A G 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=193;Dels=0.00;FS=5.577;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.078;QD=22.80;ReadPosRankSum=2.943;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:4400,501,0 chrVIII 261724 . A T 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.1735;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.595;QD=22.13;ReadPosRankSum=1.679;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3021,330,0 chrVIII 261784 . T C 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=111;Dels=0.00;FS=3.732;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.358;QD=22.86;ReadPosRankSum=1.701;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2571,291,0 chrVIII 262063 . A G 1934 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.02;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1967,222,0 chrVIII 262098 . A T 1689 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.04;FS=0.000;HaplotypeScore=163.5526;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=16.24;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1722,192,0 chrVIII 262353 . C T 2598 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.02;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2631,297,0 chrVIII 262417 . C T 2316 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.06;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2349,261,0 chrVIII 262470 . C T 3131 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.4681;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.72;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3164,345,0 chrVIII 262610 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.97;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3263,372,0 chrVIII 262624 . C G 2817 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.84;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2850,330,0 chrVIII 262647 . A G 2723 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.04;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2756,315,0 chrVIII 262734 . C T 3704.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.59;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3704,408,0 chrVIII 263049 . T C 4219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=200;Dels=0.00;FS=3.571;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.452;QD=21.10;ReadPosRankSum=1.697;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:1,197:200:99:4219,480,0 chrVIII 263162 . T C 3654.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.9899;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.64;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3654,414,0 chrVIII 263207 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.19;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3338,363,0 chrVIII 263248 . T G 3099 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.13;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3132,357,0 chrVIII 263279 . T C 2692 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.25;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2725,309,0 chrVIII 263344 . A G 2191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=117;Dels=0.00;FS=3.485;HaplotypeScore=7.4180;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-1.732;QD=18.73;ReadPosRankSum=1.643;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2224,252,0 chrVIII 263359 . C T 2342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.766;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.451;QD=19.68;ReadPosRankSum=1.587;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2375,264,0 chrVIII 263629 . G A 3761.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.9672;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.99;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3761,411,0 chrVIII 264180 . G C 4088.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.34;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4088,471,0 chrVIII 264484 . A G 3652.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.54;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3652,420,0 chrVIII 264529 . C T 3904.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.10;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3904,429,0 chrVIII 264628 . T C 4260.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.9464;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.19;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4260,477,0 chrVIII 264663 . T C 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=175;Dels=0.00;FS=9.334;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.833;QD=20.77;ReadPosRankSum=2.948;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:3635,426,0 chrVIII 264676 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.9133;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.29;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3789,423,0 chrVIII 264709 . G A 4128.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.39;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4128,462,0 chrVIII 264793 . A G 4784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=236;Dels=0.00;FS=2.948;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.380;QD=20.27;ReadPosRankSum=2.345;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:2,232:236:99:4784,560,0 chrVIII 264810 . T G 4855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=237;Dels=0.00;FS=2.370;HaplotypeScore=7.5499;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-1.906;QD=20.49;ReadPosRankSum=2.489;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:3,231:237:99:4855,543,0 chrVIII 265200 . C T 3593.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.3918;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3593,393,0 chrVIII 265246 . T C 3159 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3192,363,0 chrVIII 265763 . G A 3413.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.45;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3413,381,0 chrVIII 265972 . G A 4261.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.0997;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.31;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4261,462,0 chrVIII 266031 . A G 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.277;QD=21.72;ReadPosRankSum=1.650;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3670,423,0 chrVIII 266199 . C T 3064 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=19.77;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3097,339,0 chrVIII 266203 . T C 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=153;Dels=0.00;FS=3.036;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=-1.625;QD=18.01;ReadPosRankSum=2.417;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:2789,333,0 chrVIII 266266 . A G 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=151;Dels=0.00;FS=6.344;HaplotypeScore=9.4304;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.041;QD=17.68;ReadPosRankSum=2.385;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:2702,321,0 chrVIII 266440 . T C 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.0534;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-1.507;QD=21.91;ReadPosRankSum=1.687;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3374,390,0 chrVIII 266545 . G T 3357.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.7464;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.65;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3357,369,0 chrVIII 266720 . A G 3659.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.65;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3659,417,0 chrVIII 266757 . C T 3645.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=15.2983;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.64;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3645,393,0 chrVIII 267185 . G A 3779.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.10;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3779,423,0 chrVIII 267260 . C T 3987.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=17.2520;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.79;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3987,432,0 chrVIII 267468 . T A 2234 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=15.73;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2267,252,0 chrVIII 267471 . C A 2298 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=16.65;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2331,255,0 chrVIII 267475 . C T 2304 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=16.94;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2337,255,0 chrVIII 267487 . T C 2196 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;QD=15.04;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2229,255,0 chrVIII 267488 . C T 2215 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;QD=15.28;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2248,255,0 chrVIII 268163 . C T 2711 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.22;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2744,300,0 chrVIII 268627 . C T 4510.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.25;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4510,501,0 chrVIII 270109 . A G 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=3.499;HaplotypeScore=8.2342;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.364;QD=21.67;ReadPosRankSum=1.708;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3089,354,0 chrVIII 270259 . T C 2250 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.73;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2283,258,0 chrVIII 270272 . C T 2499 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.31;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2532,276,0 chrVIII 271736 . G T 1435 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.42;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1468,159,0 chrVIII 271937 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=72.3329;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=16.89;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1519,168,0 chrVIII 272308 . T C 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=169;Dels=0.00;FS=2.876;HaplotypeScore=9.8984;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=0.688;QD=20.91;ReadPosRankSum=2.420;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:2,164:169:99:3534,402,0 chrVIII 272330 . T C 3457.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.74;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3457,405,0 chrVIII 272411 . C T 2992 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.2973;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.47;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3025,339,0 chrVIII 272512 . C G 4845.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=10.7922;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.88;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:4845,578,0 chrVIII 272617 . A G 5067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.065;DP=233;Dels=0.00;FS=6.856;HaplotypeScore=21.0944;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-1.325;QD=21.75;ReadPosRankSum=1.714;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:3,230:233:99:5067,587,0 chrVIII 272785 . G C 6355.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.07;SB=-3.348e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:6355,726,0 chrVIII 272809 . G A 6011.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.70;SB=-3.002e+03 GT:AD:DP:GQ:PL 1/1:0,275:277:99:6011,663,0 chrVIII 273066 . G A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=20.08;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3494,378,0 chrVIII 273067 . C T 3432.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.84;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3432,378,0 chrVIII 273164 . A C 4733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=18.1629;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=0.755;QD=20.14;ReadPosRankSum=1.688;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:4733,540,0 chrVIII 273178 . A T 4578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.004;DP=226;Dels=0.00;FS=2.953;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=-0.712;QD=20.26;ReadPosRankSum=1.222;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:4578,488,0 chrVIII 273214 . G A 4119.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=19.43;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4119,444,0 chrVIII 273222 . G A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=19.50;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3822,411,0 chrVIII 273680 . C A 2759 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2792,306,0 chrVIII 274227 . T C 2355 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.26;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2388,276,0 chrVIII 274295 . G A 2134 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2167,237,0 chrVIII 274614 . C T 3385.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.07;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3385,369,0 chrVIII 274670 . C G 3083 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:3116,351,0 chrVIII 274785 . C G 2804 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.40;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2837,327,0 chrVIII 275066 . C T 3084 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3117,342,0 chrVIII 275496 . C T 3716.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.94;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3716,408,0 chrVIII 276173 . G A 2533 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.82;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2566,273,0 chrVIII 276701 . T A 2899 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.76;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2932,315,0 chrVIII 276706 . A T 2876 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.47;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2909,321,0 chrVIII 276928 . A G 4789.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=24.43;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4789,546,0 chrVIII 277471 . G A 4736.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.03;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4736,519,0 chrVIII 277837 . G A 2810 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.30;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2843,312,0 chrVIII 278206 . C T 4071.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.9663;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4071,447,0 chrVIII 278298 . T C 5294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=225;Dels=0.00;FS=2.984;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.327;QD=23.53;ReadPosRankSum=2.383;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:2,221:225:99:5294,606,0 chrVIII 278404 . C T 3766.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3766,402,0 chrVIII 278605 . C T 3423.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.4412;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.77;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3423,378,0 chrVIII 278773 . C T 4874.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.65;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4874,528,0 chrVIII 278821 . A C 3374.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0489;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.20;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3374,399,0 chrVIII 278857 . A T 2892 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.91;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2925,324,0 chrVIII 279006 . G A 3690.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=19.6963;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.78;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,154:162:99:3690,405,0 chrVIII 279197 . T G 4705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.710;DP=218;Dels=0.00;FS=5.335;HaplotypeScore=22.6133;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=0.323;QD=21.58;ReadPosRankSum=2.894;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:3,215:218:99:4705,540,0 chrVIII 279622 . T C 5113.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-2.775e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5113,599,0 chrVIII 279661 . T C 4863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=216;Dels=0.00;FS=12.499;HaplotypeScore=11.1357;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.650;QD=22.51;ReadPosRankSum=2.902;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:3,212:216:99:4863,555,0 chrVIII 279897 . T C 3621.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.51;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3621,408,0 chrVIII 280101 . C T 2734 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.0246;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=21.53;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2767,303,0 chrVIII 280227 . C T 3819.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.13;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3819,414,0 chrVIII 280455 . C T 3628.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3628,399,0 chrVIII 280574 . C T 3128 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=14.4198;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;QD=23.00;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3161,348,0 chrVIII 280864 . T C 3762.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.2973;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.75;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3762,426,0 chrVIII 280990 . G A 4816.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=16.2224;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.93;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4816,537,0 chrVIII 281374 . A G 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.643;DP=155;Dels=0.00;FS=5.983;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.799;QD=20.77;ReadPosRankSum=2.916;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3252,363,0 chrVIII 282666 . T G 967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.3945;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=1;MQRankSum=-0.776;QD=15.11;ReadPosRankSum=3.445;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:5,59:64:99:1000,100,0 chrVIII 282756 . A G 1461 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=16.60;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1494,180,0 chrVIII 282768 . A G 1567 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.4509;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=16.32;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1600,183,0 chrVIII 282930 . T C 3749.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.00;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3749,426,0 chrVIII 282961 . G C 3181 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=20.93;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3214,363,0 chrVIII 282963 . G A 3227.04 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=20.95;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3260,360,0 chrVIII 283226 . T C 1923 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=17.02;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1956,234,0 chrVIII 283475 . A G 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.4684;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=0.385;QD=19.64;ReadPosRankSum=-0.265;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,143:148:99:2939,327,0 chrVIII 283480 . C G 2695 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=18.72;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2728,318,0 chrVIII 283558 . A C 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=189;Dels=0.00;FS=4.003;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.205;QD=21.95;ReadPosRankSum=1.658;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,185:189:99:4148,480,0 chrVIII 283616 . T C 3776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.7680;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.716;QD=22.48;ReadPosRankSum=1.711;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3776,438,0 chrVIII 283677 . T A 3491.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=152.8783;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=21.68;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3491,384,0 chrVIII 283852 . A G 3145 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.9547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.42;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3178,357,0 chrVIII 283957 . T C 2831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=157;Dels=0.00;FS=3.012;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=0.165;QD=18.03;ReadPosRankSum=2.418;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:2864,327,0 chrVIII 283960 . A G 2846 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.97;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2879,327,0 chrVIII 284047 . C G 3602.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.1848;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.57;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3602,408,0 chrVIII 284128 . A G 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=3.144;HaplotypeScore=7.3539;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.178;QD=23.66;ReadPosRankSum=1.669;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:1,164:168:99:3975,441,0 chrVIII 284407 . T C 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=152;Dels=0.00;FS=6.769;HaplotypeScore=13.6375;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.267;QD=20.58;ReadPosRankSum=2.417;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3161,363,0 chrVIII 284596 . C T 3824.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.1489;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.51;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3824,423,0 chrVIII 284659 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.12;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2968,327,0 chrVIII 284685 . C T 3029 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.75;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3062,336,0 chrVIII 284827 . T A 2442 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.7435;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.85;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2475,270,0 chrVIII 284832 . C T 2324 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=19.86;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2357,261,0 chrVIII 285198 . A G 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.585;QD=21.99;ReadPosRankSum=1.708;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,140:144:99:3199,360,0 chrVIII 285289 . G A 3040 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.69;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3073,339,0 chrVIII 285301 . G A 2738 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.08;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2771,312,0 chrVIII 285915 . T C 2690 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.3587;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.23;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2723,318,0 chrVIII 285940 . C T 2974 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.87;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3007,327,0 chrVIII 285977 . A T 2994 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.39;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3027,333,0 chrVIII 286015 . T C 2663 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.83;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2696,315,0 chrVIII 286294 . C G 2829 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.9088;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.76;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2862,339,0 chrVIII 286402 . G A 3094 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.94;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3127,357,0 chrVIII 286635 . C G 3371.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=19.95;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:3371,396,0 chrVIII 286666 . G C 3786.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.4477;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.27;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3786,423,0 chrVIII 286796 . T C 2320 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.09;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2353,264,0 chrVIII 286801 . G A 2309 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.20;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2342,258,0 chrVIII 286916 . C G 2721 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.30;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2754,315,0 chrVIII 287080 . C T 2570 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=14.8202;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;QD=23.15;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2603,285,0 chrVIII 287123 . A G 2469 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2502,300,0 chrVIII 287306 . A G 3917.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.51;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3917,464,0 chrVIII 287699 . G A 3776.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=18.33;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:3776,417,0 chrVIII 287702 . A G 3539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=214;Dels=0.00;FS=3.023;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=-0.536;QD=16.54;ReadPosRankSum=2.403;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:2,211:214:99:3539,414,0 chrVIII 287854 . T A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.131;DP=246;Dels=0.00;FS=101.644;HaplotypeScore=17.1483;MLEAC=1;MLEAF=0.500;MQ=48.74;MQ0=0;MQRankSum=-12.670;QD=0.05;ReadPosRankSum=-2.136;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:145,101:246:42:42,0,2967 chrVIII 287867 . G T 172.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.497;DP=261;Dels=0.00;FS=184.838;HaplotypeScore=14.6992;MLEAC=1;MLEAF=0.500;MQ=47.11;MQ0=0;MQRankSum=-12.832;QD=0.66;ReadPosRankSum=-1.743;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,119:261:99:202,0,2748 chrVIII 287879 . T C 2542.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.145;DP=293;Dels=0.00;FS=285.586;HaplotypeScore=14.6029;MLEAC=1;MLEAF=0.500;MQ=45.59;MQ0=0;MQRankSum=12.563;QD=8.68;ReadPosRankSum=3.070;SB=-1.009e+03 GT:AD:DP:GQ:PL 0/1:144,149:293:99:2572,0,193 chrVIII 287888 . A T 100.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;DP=298;Dels=0.00;FS=320.462;HaplotypeScore=12.2408;MLEAC=1;MLEAF=0.500;MQ=46.09;MQ0=0;MQRankSum=-13.320;QD=0.34;ReadPosRankSum=0.427;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:163,135:298:99:130,0,2893 chrVIII 288005 . T C 85.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.619;DP=248;Dels=0.00;FS=73.132;HaplotypeScore=14.8755;MLEAC=1;MLEAF=0.500;MQ=52.33;MQ0=0;MQRankSum=-11.985;QD=0.34;ReadPosRankSum=-5.265;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:177,70:248:99:115,0,3315 chrVIII 288008 . A G 279.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.911;DP=259;Dels=0.00;FS=53.404;HaplotypeScore=16.5076;MLEAC=1;MLEAF=0.500;MQ=51.53;MQ0=0;MQRankSum=-12.897;QD=1.08;ReadPosRankSum=-6.034;SB=-1.870e+02 GT:AD:DP:GQ:PL 0/1:175,83:259:99:309,0,3403 chrVIII 288020 . T C 820.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.447;DP=264;Dels=0.00;FS=7.758;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=50.06;MQ0=0;MQRankSum=-12.891;QD=3.11;ReadPosRankSum=-5.143;SB=-7.870e+02 GT:AD:DP:GQ:PL 0/1:159,105:264:99:850,0,3225 chrVIII 288029 . G A 1319.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.420;DP=295;Dels=0.00;FS=6.211;HaplotypeScore=18.8189;MLEAC=1;MLEAF=0.500;MQ=49.62;MQ0=0;MQRankSum=-12.838;QD=4.47;ReadPosRankSum=-1.910;SB=-1.117e+03 GT:AD:DP:GQ:PL 0/1:161,132:295:99:1349,0,2897 chrVIII 288443 . T C 3606.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.948;DP=425;Dels=0.00;FS=223.609;HaplotypeScore=33.0699;MLEAC=1;MLEAF=0.500;MQ=53.74;MQ0=0;MQRankSum=-3.126;QD=8.48;ReadPosRankSum=-0.018;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:190,231:425:99:3606,0,3466 chrVIII 288482 . G T 2003.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.486;DP=318;Dels=0.00;FS=203.563;HaplotypeScore=23.6055;MLEAC=1;MLEAF=0.500;MQ=49.32;MQ0=0;MQRankSum=-14.595;QD=6.30;ReadPosRankSum=2.011;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:176,140:318:99:2033,0,3110 chrVIII 288484 . G T 1778.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.705;DP=309;Dels=0.00;FS=199.376;HaplotypeScore=18.0847;MLEAC=1;MLEAF=0.500;MQ=49.06;MQ0=0;MQRankSum=-14.892;QD=5.75;ReadPosRankSum=1.381;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:175,132:309:99:1808,0,3291 chrVIII 288488 . C T 1612.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.886;DP=290;Dels=0.00;FS=161.483;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=49.81;MQ0=0;MQRankSum=-14.284;QD=5.56;ReadPosRankSum=1.835;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:171,118:290:99:1642,0,3329 chrVIII 288490 . T G 1461.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.256;DP=292;Dels=0.00;FS=180.241;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=49.88;MQ0=0;MQRankSum=-14.463;QD=5.00;ReadPosRankSum=1.885;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:175,117:292:99:1491,0,3463 chrVIII 288509 . A G 1011.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.215;DP=256;Dels=0.00;FS=132.253;HaplotypeScore=13.1360;MLEAC=1;MLEAF=0.500;MQ=51.22;MQ0=0;MQRankSum=-12.783;QD=3.95;ReadPosRankSum=-0.059;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:169,87:256:99:1041,0,3279 chrVIII 288515 . A G 805.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.759;DP=248;Dels=0.00;FS=111.718;HaplotypeScore=16.2387;MLEAC=1;MLEAF=0.500;MQ=52.10;MQ0=0;MQRankSum=-12.488;QD=3.25;ReadPosRankSum=-1.530;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:170,78:248:99:835,0,3233 chrVIII 288522 . G T 392.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.179;DP=206;Dels=0.00;FS=59.522;HaplotypeScore=10.7413;MLEAC=1;MLEAF=0.500;MQ=55.11;MQ0=0;MQRankSum=-9.869;QD=1.90;ReadPosRankSum=0.461;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:162,44:206:99:422,0,3288 chrVIII 288523 . C T 382.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.145;DP=209;Dels=0.00;FS=44.037;HaplotypeScore=12.3187;MLEAC=1;MLEAF=0.500;MQ=55.18;MQ0=0;MQRankSum=-9.664;QD=1.83;ReadPosRankSum=0.117;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:163,46:209:99:412,0,3223 chrVIII 288524 . A G 388.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.572;DP=212;Dels=0.00;FS=70.830;HaplotypeScore=14.4609;MLEAC=1;MLEAF=0.500;MQ=55.25;MQ0=0;MQRankSum=-10.106;QD=1.83;ReadPosRankSum=0.208;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:169,43:212:99:418,0,3439 chrVIII 288527 . A G 367.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.855;DP=218;Dels=0.00;FS=73.865;HaplotypeScore=14.9902;MLEAC=1;MLEAF=0.500;MQ=55.39;MQ0=0;MQRankSum=-10.143;QD=1.68;ReadPosRankSum=-0.488;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:174,43:218:99:397,0,3512 chrVIII 288884 . T G 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=6.303;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.638;QD=22.00;ReadPosRankSum=1.701;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2475,276,0 chrVIII 289028 . A T 1038 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.57;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1071,117,0 chrVIII 289226 . G C 490 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.15;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,25:27:60:523,60,0 chrVIII 289350 . A G 158.03 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=7.53;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:191,24,0 chrVIII 289586 . G A 2254 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.24;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2287,255,0 chrVIII 289695 . T C 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.688;QD=20.85;ReadPosRankSum=1.707;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:2910,330,0 chrVIII 289811 . A T 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=150;Dels=0.00;FS=11.983;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.912;QD=23.47;ReadPosRankSum=2.912;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:3521,396,0 chrVIII 289865 . G A 3114 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.8653;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.09;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3147,348,0 chrVIII 289911 . C T 4139.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.35;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4139,468,0 chrVIII 290031 . G A 2665 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=19.89;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2698,303,0 chrVIII 290051 . T G 2473 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=19.17;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2506,288,0 chrVIII 290085 . T G 2564 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6895;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=18.85;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2597,306,0 chrVIII 290247 . A C 2571 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.61;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2604,297,0 chrVIII 290349 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=21.55;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2770,300,0 chrVIII 290385 . C G 2425 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=18.65;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2458,282,0 chrVIII 290390 . T G 2270 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=16.69;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2303,267,0 chrVIII 290406 . C T 2529 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=17.94;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2562,282,0 chrVIII 290458 . C T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.5609;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=19.92;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3346,366,0 chrVIII 290531 . G A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=21.58;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3496,378,0 chrVIII 290535 . T C 3197 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;QD=20.49;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3230,369,0 chrVIII 290681 . C A 2638 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=22.94;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2671,291,0 chrVIII 290711 . A C 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;MQRankSum=-1.698;QD=21.45;ReadPosRankSum=1.698;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2221,252,0 chrVIII 290716 . A T 2073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=97;Dels=0.00;FS=2.725;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;MQRankSum=-0.952;QD=21.37;ReadPosRankSum=2.399;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2106,228,0 chrVIII 290747 . T C 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.307;DP=103;Dels=0.00;FS=2.490;HaplotypeScore=92.8907;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;MQRankSum=1.683;QD=19.07;ReadPosRankSum=2.892;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:3,99:103:99:1997,228,0 chrVIII 290790 . C A 1931 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=19.31;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1964,219,0 chrVIII 290985 . G A 3172 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;QD=23.85;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3205,357,0 chrVIII 291156 . G A 2874 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=0;QD=23.18;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2907,324,0 chrVIII 291159 . G A 2712 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.08;MQ0=0;QD=23.38;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2745,312,0 chrVIII 291163 . C T 2402 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=25.02;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2435,267,0 chrVIII 291164 . C T 2193 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;QD=23.08;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2226,255,0 chrVIII 291168 . A G 2140 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;MQRankSum=1.398;QD=20.78;ReadPosRankSum=2.402;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2173,246,0 chrVIII 291180 . G A 1885 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=20.05;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1918,213,0 chrVIII 291195 . G A 1734 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=29.76;MQ0=0;QD=17.52;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,95:99:99:1767,195,0 chrVIII 291243 . T C 1603 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=4.067;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;MQRankSum=1.566;QD=12.82;ReadPosRankSum=1.704;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:1636,192,0 chrVIII 291246 . G A 1621 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=13.18;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1654,189,0 chrVIII 291252 . T C 1650 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.752;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;MQRankSum=0.902;QD=13.64;ReadPosRankSum=1.703;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1683,198,0 chrVIII 291254 . A G 1678 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=2.939;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;MQRankSum=-1.657;QD=13.87;ReadPosRankSum=2.409;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:1711,198,0 chrVIII 291291 . G A 1610 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=0;QD=14.25;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1643,183,0 chrVIII 291297 . G T 1527 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.19;MQ0=0;QD=13.39;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1560,180,0 chrVIII 291303 . A G 1468 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=1;QD=12.55;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1501,177,0 chrVIII 291312 . G A 1335 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.67;MQ0=1;QD=11.12;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1368,153,0 chrVIII 291315 . A G 1247 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.44;MQ0=2;MQRankSum=-1.160;QD=10.66;ReadPosRankSum=1.702;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:1280,147,0 chrVIII 291318 . G A 1100 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=3;QD=9.73;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:1133,129,0 chrVIII 291327 . T G 828 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=170.6103;MLEAC=2;MLEAF=1.00;MQ=24.82;MQ0=3;QD=8.12;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:3,99:102:99:861,105,0 chrVIII 291360 . T G 445 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=4;QD=4.08;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:4,105:109:60:478,60,0 chrVIII 291363 . A T 289 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.463;DP=107;Dels=0.00;FS=7.118;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.56;MQ0=4;MQRankSum=-0.723;QD=2.70;ReadPosRankSum=1.698;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:5,102:107:39:322,39,0 chrVIII 291374 . C T 188.01 filter AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=78.2872;MLEAC=2;MLEAF=1.00;MQ=25.69;MQ0=4;QD=1.66;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:4,109:113:27:221,27,0 chrVIII 291381 . G A 213 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=78.2872;MLEAC=2;MLEAF=1.00;MQ=25.80;MQ0=4;QD=1.78;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:4,116:120:30:246,30,0 chrVIII 291393 . T C 259 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.36;MQ0=4;MQRankSum=-1.732;QD=2.07;ReadPosRankSum=1.675;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:5,120:125:36:292,36,0 chrVIII 291396 . G T 298 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.49;MQ0=4;QD=2.27;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:4,127:131:39:331,39,0 chrVIII 291399 . A G 313 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=26.74;MQ0=3;QD=2.50;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:3,122:125:42:346,42,0 chrVIII 291411 . G A 458 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.7273;MLEAC=2;MLEAF=1.00;MQ=26.97;MQ0=2;QD=3.14;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:2,144:146:60:491,60,0 chrVIII 291414 . A G 426 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.6938;MLEAC=2;MLEAF=1.00;MQ=26.76;MQ0=1;QD=2.96;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:1,143:144:60:459,60,0 chrVIII 291432 . G T 988 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;QD=6.37;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:1021,123,0 chrVIII 291447 . A G 1181 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;QD=7.57;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:1214,150,0 chrVIII 291480 . G A 1202 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=32.08;MQ0=0;QD=9.11;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1235,144,0 chrVIII 291516 . G A 1103 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=0;QD=8.69;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1136,141,0 chrVIII 291522 . G A 1171 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=0;QD=9.68;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1204,152,0 chrVIII 291528 . A G 1247 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=0;QD=9.90;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1280,164,0 chrVIII 291543 . T C 1583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=167;Dels=0.00;FS=2.954;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.79;MQ0=0;MQRankSum=-2.332;QD=9.48;ReadPosRankSum=2.420;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:1616,200,0 chrVIII 291558 . T C 2446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=206;Dels=0.00;FS=5.908;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=34.64;MQ0=0;MQRankSum=-2.410;QD=11.87;ReadPosRankSum=2.868;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:3,203:206:99:2479,299,0 chrVIII 291726 . G A 2926 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.7666;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;QD=18.29;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2959,333,0 chrVIII 291731 . T C 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=161;Dels=0.00;FS=3.036;HaplotypeScore=6.9671;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;MQRankSum=-2.129;QD=18.33;ReadPosRankSum=2.373;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:2984,354,0 chrVIII 291987 . A C 5252.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=234;Dels=0.00;FS=6.819;HaplotypeScore=18.9511;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-1.180;QD=22.44;ReadPosRankSum=2.408;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:2,232:234:99:5252,620,0 chrVIII 292143 . T G 4337.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=15.3174;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.27;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4337,512,0 chrVIII 292176 . T G 4616.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.16;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:0,225:229:99:4616,551,0 chrVIII 292435 . G A 3813.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=20.95;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3813,414,0 chrVIII 292444 . A G 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=-0.469;QD=18.46;ReadPosRankSum=1.636;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:1,180:184:99:3397,387,0 chrVIII 292488 . A C 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=146;Dels=0.00;FS=2.725;HaplotypeScore=10.0558;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.301;QD=15.69;ReadPosRankSum=2.415;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:2,142:146:99:2324,264,0 chrVIII 292976 . A G 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=6.620;HaplotypeScore=5.7933;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.418;QD=20.76;ReadPosRankSum=2.381;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3022,360,0 chrVIII 292991 . C T 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0874;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.468;QD=21.20;ReadPosRankSum=0.367;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2959,327,0 chrVIII 293055 . A G 2102 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=17.97;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2135,258,0 chrVIII 293173 . G A 2122 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.01;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2155,237,0 chrVIII 293342 . G T 1992 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.65;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2025,222,0 chrVIII 293434 . T C 1276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=67.0541;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;MQRankSum=1.602;QD=15.95;ReadPosRankSum=1.689;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1309,147,0 chrVIII 293443 . G A 967 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=13.43;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1000,111,0 chrVIII 293487 . G A 1024 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=14.84;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1057,120,0 chrVIII 293529 . T A 1820 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.20;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1853,207,0 chrVIII 293740 . A G 1818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.01;FS=4.831;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.590;QD=24.57;ReadPosRankSum=1.637;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1851,207,0 chrVIII 293825 . T C 2723 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.02;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;QD=22.32;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2756,312,0 chrVIII 293909 . C T 3177 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.53;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3210,351,0 chrVIII 293980 . A G 2901 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.87;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2934,348,0 chrVIII 294201 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=23.18;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3338,369,0 chrVIII 294204 . T G 3370.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=23.57;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3370,378,0 chrVIII 294314 . G A 3307.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=23.96;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3307,357,0 chrVIII 294317 . G C 2966 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.04;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2999,342,0 chrVIII 294409 . A G 2081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=116;Dels=0.02;FS=0.000;HaplotypeScore=13.9641;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;MQRankSum=-0.851;QD=17.94;ReadPosRankSum=1.702;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2114,237,0 chrVIII 294412 . C T 2050 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.02;FS=0.000;HaplotypeScore=12.3868;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=18.30;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2083,228,0 chrVIII 294446 . T A 1210 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=155.6078;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=0;QD=14.58;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1243,135,0 chrVIII 294447 . G A 1206 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=155.6078;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;QD=14.71;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1239,135,0 chrVIII 294469 . A G 1395 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=13.95;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1428,168,0 chrVIII 294768 . T C 2388 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.4790;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.71;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2421,273,0 chrVIII 294900 . G A 3524.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.75;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3524,387,0 chrVIII 294915 . G A 2673 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;QD=20.72;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2706,303,0 chrVIII 295200 . T G 4824.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=10.4542;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.84;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:4824,575,0 chrVIII 295376 . G A 4338.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.2809;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.70;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4338,477,0 chrVIII 295445 . A G 3625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=1.440;QD=20.37;ReadPosRankSum=1.654;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3625,417,0 chrVIII 295470 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.42;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3141,345,0 chrVIII 295620 . G A 4160.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.64;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4160,459,0 chrVIII 296229 . T G 4508.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.5053;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.43;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4508,507,0 chrVIII 296571 . A T 1471 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=24.11;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1504,165,0 chrVIII 296592 . C G 1199 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=53.6094;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=19.03;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1232,141,0 chrVIII 296619 . T G 1346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-1.210;QD=18.44;ReadPosRankSum=1.685;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1379,156,0 chrVIII 296649 . A G 1853 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=20.14;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1886,216,0 chrVIII 296691 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.02;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2492,267,0 chrVIII 296707 . C G 2489 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.60;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,123:127:99:2522,291,0 chrVIII 296845 . A G 5864.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.74;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:5864,666,0 chrVIII 296890 . G A 5800.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=23.39;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5800,625,0 chrVIII 296900 . T C 5097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=243;Dels=0.00;FS=2.574;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.552;QD=20.98;ReadPosRankSum=2.946;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:3,237:243:99:5097,591,0 chrVIII 297072 . A T 5254.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=14.2218;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.53;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5254,582,0 chrVIII 297281 . G C 2570 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.60;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2603,297,0 chrVIII 297312 . A G 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.755;QD=22.48;ReadPosRankSum=1.643;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2663,306,0 chrVIII 297382 . T A 3488.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.73;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3488,396,0 chrVIII 297421 . C T 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.299;DP=145;Dels=0.00;FS=5.563;HaplotypeScore=7.4502;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.684;QD=23.76;ReadPosRankSum=1.612;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3445,353,0 chrVIII 297520 . G A 4691.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.2902;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.34;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4691,513,0 chrVIII 297618 . C T 4678.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.5974;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.82;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4678,513,0 chrVIII 297669 . C T 4617.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=20.7146;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.68;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4617,504,0 chrVIII 297731 . A G 3777.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.77;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3777,438,0 chrVIII 297766 . A G 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.9626;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.779;QD=20.60;ReadPosRankSum=2.412;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:3997,453,0 chrVIII 297814 . C T 5006.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.28;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5006,555,0 chrVIII 297979 . C T 4260.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.03;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4260,474,0 chrVIII 298009 . T C 4352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=206;Dels=0.00;FS=5.731;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.621;QD=21.13;ReadPosRankSum=2.966;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:3,201:206:99:4352,486,0 chrVIII 298388 . G A 3878.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.8670;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.55;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3878,435,0 chrVIII 298516 . A G 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.5396;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.408;QD=20.98;ReadPosRankSum=1.563;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2613,294,0 chrVIII 298776 . G A 2713 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.03;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2746,300,0 chrVIII 298784 . C T 2564 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.72;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2597,285,0 chrVIII 298950 . T A 4007.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.7148;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.71;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4007,438,0 chrVIII 299018 . C A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.16;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4076,453,0 chrVIII 299178 . G A 4293.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.96;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4293,471,0 chrVIII 299427 . A G 3026 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.31;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3059,345,0 chrVIII 299430 . A G 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=144;Dels=0.00;FS=5.908;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-0.448;QD=20.03;ReadPosRankSum=2.756;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:2917,333,0 chrVIII 299583 . G C 3447.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.10;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3447,390,0 chrVIII 299721 . T G 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=184;Dels=0.02;FS=0.000;HaplotypeScore=9.5328;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=0.493;QD=16.46;ReadPosRankSum=1.674;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3062,339,0 chrVIII 299724 . A G 3120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=181;Dels=0.00;FS=9.304;HaplotypeScore=8.7441;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=-0.089;QD=17.24;ReadPosRankSum=2.368;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3153,348,0 chrVIII 299770 . A G 2880 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=15.16;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:2913,339,0 chrVIII 299778 . A G 2978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=3.613;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=-0.117;QD=15.43;ReadPosRankSum=1.678;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:3011,357,0 chrVIII 299865 . C T 3652.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.75;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3652,402,0 chrVIII 300078 . C T 3320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=151;Dels=0.00;FS=3.565;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.854;QD=21.99;ReadPosRankSum=0.924;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3320,375,0 chrVIII 300158 . C T 3549.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.35;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3549,393,0 chrVIII 300204 . G A 3902.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.9491;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.09;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3902,432,0 chrVIII 300311 . A G 3835.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.69;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3835,435,0 chrVIII 300372 . G C 3424.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.8464;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.81;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3424,410,0 chrVIII 300648 . G A 2872 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.26;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2905,318,0 chrVIII 301023 . A G 4643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.385;DP=209;Dels=0.00;FS=17.252;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.170;QD=22.22;ReadPosRankSum=3.368;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:4,204:209:99:4643,551,0 chrVIII 301054 . A G 4701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.547;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.4391;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.631;QD=22.82;ReadPosRankSum=0.975;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4701,537,0 chrVIII 302231 . A G 2814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.251;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-1.975;QD=16.36;ReadPosRankSum=1.473;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:2847,302,0 chrVIII 302232 . C A 2903 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=17.49;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:2936,315,0 chrVIII 302366 . A T 4707.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=4.3437;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=19.37;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:4707,528,0 chrVIII 302367 . T A 4800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=4.3437;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-0.648;QD=19.51;ReadPosRankSum=1.493;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:1,245:246:99:4800,531,0 chrVIII 302636 . T C 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.2390;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=1.043;QD=21.70;ReadPosRankSum=1.690;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3602,423,0 chrVIII 302647 . A G 3805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=4.055;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=1.632;QD=21.99;ReadPosRankSum=1.712;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3805,432,0 chrVIII 302722 . C G 3402.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.38;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3402,387,0 chrVIII 302908 . G A 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.062;QD=20.97;ReadPosRankSum=1.502;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3816,417,0 chrVIII 303228 . C T 2939 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2972,321,0 chrVIII 303510 . T A 3638.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3638,402,0 chrVIII 304416 . A T 3701.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.2805;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.43;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3701,411,0 chrVIII 304458 . C T 2937 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=22.25;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2970,327,0 chrVIII 304461 . A C 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.974;QD=20.58;ReadPosRankSum=1.631;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2853,318,0 chrVIII 305079 . C T 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.446;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5050;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.217;QD=21.75;ReadPosRankSum=-1.732;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2708,282,0 chrVIII 305112 . T A 2445 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.64;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2478,279,0 chrVIII 305268 . G A 3932.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=15.9748;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.83;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3932,429,0 chrVIII 305554 . C T 4722.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.2459;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.27;SB=-2.926e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4722,516,0 chrVIII 305712 . T C 4763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=217;Dels=0.00;FS=3.031;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.256;QD=21.95;ReadPosRankSum=2.393;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:4763,546,0 chrVIII 305835 . A G 4263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.400;QD=23.17;ReadPosRankSum=1.675;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:4263,489,0 chrVIII 305874 . T C 3848.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.90;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3848,435,0 chrVIII 305927 . G A 2703 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.95;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2736,300,0 chrVIII 306307 . C T 3798.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3798,411,0 chrVIII 306390 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=179;Dels=0.00;FS=3.028;HaplotypeScore=20.1582;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.460;QD=21.34;ReadPosRankSum=2.408;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3819,429,0 chrVIII 306720 . T C 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.013;QD=22.22;ReadPosRankSum=1.652;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2944,327,0 chrVIII 307188 . A G 2875 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.8287;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.57;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2908,330,0 chrVIII 307581 . A C 3474.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.47;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3474,405,0 chrVIII 307644 . G A 3181 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.0147;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.79;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3214,363,0 chrVIII 308157 . A G 3676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=158;Dels=0.00;FS=7.644;HaplotypeScore=10.9811;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.465;QD=23.27;ReadPosRankSum=2.418;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3676,408,0 chrVIII 308355 . A G 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.275;DP=126;Dels=0.00;FS=2.423;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.189;QD=20.89;ReadPosRankSum=3.360;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:4,121:126:99:2665,306,0 chrVIII 308566 . G T 2442 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.04;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2475,273,0 chrVIII 308736 . C T 3150 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.0601;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.58;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3183,345,0 chrVIII 308964 . T C 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.504;QD=22.39;ReadPosRankSum=1.687;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3403,390,0 chrVIII 309051 . G A 4139.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.3002;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.62;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4139,459,0 chrVIII 309105 . A G 3921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=171;Dels=0.00;FS=2.699;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.207;QD=22.93;ReadPosRankSum=2.392;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3921,453,0 chrVIII 309216 . C T 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=147;Dels=0.00;FS=3.418;HaplotypeScore=5.5006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.374;QD=22.47;ReadPosRankSum=-0.681;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3303,347,0 chrVIII 309312 . A G 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=139;Dels=0.00;FS=4.111;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.034;QD=21.93;ReadPosRankSum=1.706;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,133:139:99:3081,354,0 chrVIII 309963 . A G 2944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=139;Dels=0.00;FS=6.117;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=0.934;QD=21.18;ReadPosRankSum=2.949;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:3,134:139:99:2977,342,0 chrVIII 309969 . T C 2973 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=21.54;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3006,339,0 chrVIII 310032 . G A 2456 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.54;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2489,276,0 chrVIII 310647 . A C 4906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=215;Dels=0.00;FS=5.023;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.472;QD=22.82;ReadPosRankSum=1.716;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,212:215:99:4906,561,0 chrVIII 310716 . A C 5700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=19.7950;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.086;QD=22.53;ReadPosRankSum=0.839;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:1,251:253:99:5700,654,0 chrVIII 310845 . A G 6614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.070;DP=291;Dels=0.00;FS=19.230;HaplotypeScore=22.7481;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.755;QD=22.73;ReadPosRankSum=4.109;SB=-3.360e+03 GT:AD:DP:GQ:PL 1/1:6,282:291:99:6614,753,0 chrVIII 311298 . T C 5370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=230;Dels=0.00;FS=2.891;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.584;QD=23.35;ReadPosRankSum=2.417;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:5370,603,0 chrVIII 311928 . A G 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=3.457;HaplotypeScore=9.1120;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.280;QD=21.70;ReadPosRankSum=1.657;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4014,479,0 chrVIII 312174 . T G 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=173;Dels=0.00;FS=3.011;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.496;QD=19.95;ReadPosRankSum=2.392;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:2,169:173:99:3451,411,0 chrVIII 312207 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.85;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3561,396,0 chrVIII 312465 . C T 2809 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.7346;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.47;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2842,306,0 chrVIII 312876 . C T 1898 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.2473;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.19;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1931,216,0 chrVIII 312975 . T A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.82;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3674,414,0 chrVIII 314005 . A G 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.040;QD=20.42;ReadPosRankSum=2.417;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3096,360,0 chrVIII 314230 . G A 2047 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.37;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2080,228,0 chrVIII 314465 . C T 2822 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.05;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2855,318,0 chrVIII 314605 . T C 2261 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.0143;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.49;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2294,264,0 chrVIII 314622 . G A 2462 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.22;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2495,270,0 chrVIII 314881 . A G 827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=7.368;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=-1.617;QD=13.78;ReadPosRankSum=1.675;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:860,99,0 chrVIII 314901 . C T 431 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=7.98;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:51:464,51,0 chrVIII 314905 . A G 449 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;QD=8.80;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:54:482,54,0 chrVIII 314921 . T G 358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=40.03;MQ0=0;MQRankSum=-0.874;QD=6.17;ReadPosRankSum=2.237;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:45:391,45,0 chrVIII 314922 . G A 367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.185;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=40.03;MQ0=0;MQRankSum=-0.456;QD=6.33;ReadPosRankSum=1.550;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:45:400,45,0 chrVIII 315021 . C T 2618 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.24;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2651,291,0 chrVIII 315181 . A G 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.210;DP=124;Dels=0.00;FS=10.759;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=0.510;QD=21.51;ReadPosRankSum=2.410;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2700,324,0 chrVIII 315358 . T C 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=3.440;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=1.589;QD=22.08;ReadPosRankSum=1.691;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3754,426,0 chrVIII 315367 . T C 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=3.350;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=-1.332;QD=20.89;ReadPosRankSum=1.652;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3614,411,0 chrVIII 315385 . T C 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=163;Dels=0.00;FS=7.253;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-0.580;QD=18.96;ReadPosRankSum=2.374;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3123,354,0 chrVIII 315450 . A G 3181 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.01;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3214,366,0 chrVIII 315653 . A G 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.222;QD=22.79;ReadPosRankSum=1.703;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2745,312,0 chrVIII 315789 . T C 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=144;Dels=0.00;FS=7.220;HaplotypeScore=9.0350;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.367;QD=21.36;ReadPosRankSum=2.415;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3109,357,0 chrVIII 315879 . T C 4420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=16.8572;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.497;QD=21.67;ReadPosRankSum=1.715;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4420,504,0 chrVIII 316019 . A G 5955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=251;Dels=0.00;FS=14.958;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.141;QD=23.73;ReadPosRankSum=2.948;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:3,247:251:99:5955,675,0 chrVIII 316099 . G A 5785.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=10.3224;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.30;SB=-3.228e+03 GT:AD:DP:GQ:PL 1/1:0,284:285:99:5785,639,0 chrVIII 316134 . A C 6449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.249;DP=321;Dels=0.00;FS=9.030;HaplotypeScore=19.1308;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.976;QD=20.09;ReadPosRankSum=3.434;SB=-3.908e+03 GT:AD:DP:GQ:PL 1/1:4,316:321:99:6449,729,0 chrVIII 316426 . T C 5774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=279;Dels=0.00;FS=13.896;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;MQRankSum=1.424;QD=20.70;ReadPosRankSum=2.953;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:3,274:279:99:5774,660,0 chrVIII 316440 . G A 5657.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=21.19;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:5657,618,0 chrVIII 316447 . C T 5310.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=20.74;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5310,594,0 chrVIII 316452 . T C 5225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.345;DP=258;Dels=0.01;FS=18.548;HaplotypeScore=6.5613;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=-0.078;QD=20.25;ReadPosRankSum=3.406;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:4,252:256:99:5225,585,0 chrVIII 316661 . G A 4697.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.69;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4697,513,0 chrVIII 316718 . T C 4489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=0.826;QD=20.59;ReadPosRankSum=1.700;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4489,533,0 chrVIII 316721 . T C 4622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=225;Dels=0.00;FS=2.913;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=1.522;QD=20.54;ReadPosRankSum=2.428;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:4622,528,0 chrVIII 316823 . G A 6032.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.52;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:6032,651,0 chrVIII 316916 . A G 5870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=20.3324;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.206;QD=21.50;ReadPosRankSum=1.629;SB=-3.286e+03 GT:AD:DP:GQ:PL 1/1:1,269:273:99:5870,666,0 chrVIII 317021 . T A 6737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=334;Dels=0.00;FS=5.967;HaplotypeScore=12.0693;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-1.221;QD=20.17;ReadPosRankSum=2.955;SB=-3.935e+03 GT:AD:DP:GQ:PL 1/1:3,331:334:99:6737,765,0 chrVIII 317030 . T C 6915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=13.5349;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-1.437;QD=20.16;ReadPosRankSum=1.722;SB=-3.658e+03 GT:AD:DP:GQ:PL 1/1:1,340:343:99:6915,795,0 chrVIII 317153 . C T 4610.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=28.9687;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.70;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,225:234:99:4610,525,0 chrVIII 317247 . C T 5776.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=21.8153;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=19.19;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,297:301:99:5776,633,0 chrVIII 317296 . A G 4784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.351;DP=239;Dels=0.00;FS=4.854;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.901;QD=20.02;ReadPosRankSum=3.417;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:4,235:239:99:4784,540,0 chrVIII 317384 . A G 3666.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=19.82;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3666,420,0 chrVIII 317401 . G A 3656.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=20.31;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3656,402,0 chrVIII 317423 . G A 3359.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=18.26;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3359,369,0 chrVIII 317435 . A G 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=192;Dels=0.00;FS=2.953;HaplotypeScore=5.9954;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=0.492;QD=15.45;ReadPosRankSum=2.027;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:2999,345,0 chrVIII 317992 . G A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.2040;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.75;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3698,411,0 chrVIII 318122 . T C 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.472;QD=22.91;ReadPosRankSum=1.711;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3780,435,0 chrVIII 318497 . G A 3660.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.80;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3660,399,0 chrVIII 318514 . A G 2816 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.53;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2849,327,0 chrVIII 318899 . C T 4740.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.15;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4740,516,0 chrVIII 319000 . A G 4516.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.00;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4516,516,0 chrVIII 319046 . C T 3948.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.2119;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=18.19;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:3948,426,0 chrVIII 319058 . A C 3476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=219;Dels=0.00;FS=3.023;HaplotypeScore=14.2569;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-0.970;QD=15.87;ReadPosRankSum=2.360;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:3476,393,0 chrVIII 319202 . G A 5000.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.4314;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.83;SB=-2.821e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5000,552,0 chrVIII 319904 . G T 2689 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.01;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2722,303,0 chrVIII 320440 . A C 4713.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.5038;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.23;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4713,543,0 chrVIII 320473 . G A 4597.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.3869;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.99;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4597,504,0 chrVIII 320515 . T C 4526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=220;Dels=0.00;FS=3.633;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-1.014;QD=20.57;ReadPosRankSum=1.684;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:1,216:220:99:4526,519,0 chrVIII 320578 . A G 4759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=221;Dels=0.00;FS=5.939;HaplotypeScore=15.6243;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=0.241;QD=21.53;ReadPosRankSum=2.968;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:3,218:221:99:4759,531,0 chrVIII 320731 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=0.259;QD=19.93;ReadPosRankSum=1.711;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3349,393,0 chrVIII 320791 . G A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=18.65;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3507,390,0 chrVIII 320792 . G A 3694.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=19.75;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3694,396,0 chrVIII 320927 . G A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.1357;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3944,438,0 chrVIII 320985 . G C 3648.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.69;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3648,411,0 chrVIII 321029 . G A 3121 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=22.78;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3154,345,0 chrVIII 321065 . T C 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=137;Dels=0.00;FS=2.982;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-0.642;QD=18.35;ReadPosRankSum=2.377;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2547,294,0 chrVIII 321073 . A G 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.965;HaplotypeScore=10.5471;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-0.661;QD=19.32;ReadPosRankSum=1.687;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:2989,342,0 chrVIII 321130 . T C 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=3.037;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=1.095;QD=19.28;ReadPosRankSum=1.690;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3176,378,0 chrVIII 321242 . T C 2678 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.77;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2711,312,0 chrVIII 321577 . A G 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=3.919;HaplotypeScore=9.9445;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.133;QD=21.79;ReadPosRankSum=1.684;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3149,360,0 chrVIII 321670 . A T 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=164;Dels=0.00;FS=3.176;HaplotypeScore=14.9535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.494;QD=21.40;ReadPosRankSum=1.710;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3509,396,0 chrVIII 322046 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=20.08;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3126,342,0 chrVIII 322059 . A C 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=-0.023;QD=17.88;ReadPosRankSum=1.709;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,149:154:99:2786,315,0 chrVIII 322072 . T C 2846 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.8384;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.60;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2879,330,0 chrVIII 322117 . T C 2757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.688;QD=17.67;ReadPosRankSum=1.665;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2790,318,0 chrVIII 322208 . C A 2734 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.97;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2767,306,0 chrVIII 322246 . T C 3464.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=25.47;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3464,387,0 chrVIII 322276 . G A 3794.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=24.80;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3794,417,0 chrVIII 322396 . C T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.97;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3764,408,0 chrVIII 322483 . G A 3992.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.6009;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.76;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3992,444,0 chrVIII 322603 . A C 3772.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.14;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3772,432,0 chrVIII 322648 . G A 3477.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3477,384,0 chrVIII 323117 . A G 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=100;Dels=0.00;FS=3.872;HaplotypeScore=6.5827;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-1.697;QD=23.15;ReadPosRankSum=1.697;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2348,264,0 chrVIII 323348 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.71;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2622,291,0 chrVIII 323407 . A C 1937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=112;Dels=0.00;FS=6.464;HaplotypeScore=97.7880;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-2.361;QD=17.29;ReadPosRankSum=2.405;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:2,109:112:99:1970,234,0 chrVIII 323792 . A G 3617.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.5182;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.34;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3617,408,0 chrVIII 324023 . T G 4077.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=16.6273;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.80;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4077,471,0 chrVIII 324254 . G A 4872.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=17.5833;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.73;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4872,528,0 chrVIII 324502 . C T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=23.14;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3656,399,0 chrVIII 324687 . T C 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.390;DP=162;Dels=0.00;FS=13.521;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=-0.099;QD=18.67;ReadPosRankSum=4.399;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:7,155:162:99:3058,345,0 chrVIII 324730 . T C 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.418;DP=209;Dels=0.00;FS=5.015;HaplotypeScore=175.8879;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;MQRankSum=-1.590;QD=14.97;ReadPosRankSum=3.377;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:4,205:209:99:3162,363,0 chrVIII 324735 . G A 3411.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=15.72;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:3411,378,0 chrVIII 324770 . G A 3895.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=16.86;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:3895,426,0 chrVIII 324819 . A G 5659.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=6.6052;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.28;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5659,642,0 chrVIII 324936 . C T 4763.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=21.95;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4763,534,0 chrVIII 325302 . G A 3865.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.7752;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.34;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3865,429,0 chrVIII 325571 . C G 3893.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.0967;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.38;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:3893,450,0 chrVIII 325586 . T C 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.191;DP=191;Dels=0.00;FS=6.324;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.821;QD=19.81;ReadPosRankSum=2.424;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:3783,435,0 chrVIII 325975 . T C 5505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=14.7310;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.455;QD=23.13;ReadPosRankSum=1.688;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:1,235:238:99:5505,624,0 chrVIII 326461 . G C 3152 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.59;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3185,366,0 chrVIII 326679 . C T 1635 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=15.2161;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=17.77;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1668,183,0 chrVIII 327083 . G A 4477.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.56;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4477,495,0 chrVIII 327200 . A G 4559.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.92;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4559,516,0 chrVIII 327257 . T C 4392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=213;Dels=0.00;FS=9.532;HaplotypeScore=14.8501;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.439;QD=20.62;ReadPosRankSum=2.967;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:3,210:213:99:4392,513,0 chrVIII 327483 . G A 5084.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.6158;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.43;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:5084,552,0 chrVIII 327578 . A G 5754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=275;Dels=0.00;FS=4.003;HaplotypeScore=19.8523;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.721;QD=20.92;ReadPosRankSum=1.644;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:1,274:275:99:5754,689,0 chrVIII 327854 . C T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.14;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4375,477,0 chrVIII 328055 . A G 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=15.7007;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.924;QD=20.41;ReadPosRankSum=2.353;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:2,151:155:99:3196,366,0 chrVIII 328271 . C A 4771.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.6265;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.74;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4771,528,0 chrVIII 328366 . T A 3530.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.52;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3530,387,0 chrVIII 328941 . A G 3545.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.1100;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.23;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3545,402,0 chrVIII 328956 . T G 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.773;DP=164;Dels=0.00;FS=5.562;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=0.405;QD=20.23;ReadPosRankSum=2.957;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3317,390,0 chrVIII 329264 . A G 4112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=191;Dels=0.00;FS=19.413;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.672;QD=21.53;ReadPosRankSum=4.056;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:6,185:191:99:4112,446,0 chrVIII 329277 . C T 3960.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=19.80;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3960,438,0 chrVIII 329295 . T C 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=215;Dels=0.00;FS=2.981;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.154;QD=18.55;ReadPosRankSum=2.427;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:3989,447,0 chrVIII 329544 . G A 5329.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=16.9784;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.20;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5329,576,0 chrVIII 329634 . T C 4245.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.8537;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.41;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4245,489,0 chrVIII 330081 . A G 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.756;DP=161;Dels=0.00;FS=5.575;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.006;QD=21.66;ReadPosRankSum=2.919;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3488,399,0 chrVIII 330211 . A G 4021.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.72;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4021,462,0 chrVIII 330285 . G A 3352.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.77;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3352,372,0 chrVIII 330444 . T C 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=148;Dels=0.00;FS=3.222;HaplotypeScore=14.4141;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.119;QD=19.43;ReadPosRankSum=1.685;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:2909,342,0 chrVIII 330629 . T C 2454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=118;Dels=0.00;FS=3.485;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.404;QD=20.80;ReadPosRankSum=1.702;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2487,297,0 chrVIII 330844 . A G 2484 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6787;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2517,285,0 chrVIII 331227 . T C 3383.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.86;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3383,384,0 chrVIII 331605 . A G 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=180;Dels=0.00;FS=2.802;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.416;QD=21.24;ReadPosRankSum=2.422;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3823,432,0 chrVIII 331641 . A G 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0150;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-1.582;QD=19.43;ReadPosRankSum=1.668;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3181,360,0 chrVIII 331656 . G A 2909 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.92;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2942,330,0 chrVIII 331847 . G A 2814 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.07;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2847,312,0 chrVIII 331908 . C T 2353 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.39;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2386,264,0 chrVIII 331987 . T G 2122 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=18.61;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2155,249,0 chrVIII 331991 . A C 2112 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=18.53;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2145,243,0 chrVIII 332099 . G T 2908 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.20;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2941,318,0 chrVIII 332305 . A C 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.153;DP=150;Dels=0.00;FS=7.517;HaplotypeScore=15.9196;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.041;QD=20.60;ReadPosRankSum=2.400;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3123,360,0 chrVIII 332482 . A G 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=181;Dels=0.00;FS=3.656;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.775;QD=21.07;ReadPosRankSum=1.694;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3813,452,0 chrVIII 332633 . G A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.29;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4109,447,0 chrVIII 332671 . T C 3955.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.5753;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.60;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3955,462,0 chrVIII 332704 . T G 4134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.707;DP=186;Dels=0.00;FS=6.015;HaplotypeScore=14.4265;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.116;QD=22.23;ReadPosRankSum=2.851;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:3,179:186:99:4134,471,0 chrVIII 333122 . A G 4927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=219;Dels=0.00;FS=6.242;HaplotypeScore=6.2291;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.712;QD=22.50;ReadPosRankSum=2.416;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:4927,555,0 chrVIII 333331 . C T 4338.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.3676;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.32;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4338,480,0 chrVIII 333425 . T C 3548.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3548,422,0 chrVIII 333572 . T C 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=187;Dels=0.00;FS=2.906;HaplotypeScore=7.4700;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.258;QD=20.54;ReadPosRankSum=2.423;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:3841,435,0 chrVIII 333590 . G A 3815.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.85;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3815,423,0 chrVIII 333641 . T C 3103 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=19.52;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3136,360,0 chrVIII 333704 . C T 3303.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.73;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3303,363,0 chrVIII 334091 . A G 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=1.113;QD=19.77;ReadPosRankSum=1.683;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:2840,327,0 chrVIII 334107 . C A 3020 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.68;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3053,336,0 chrVIII 334136 . G A 2992 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.00;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3025,330,0 chrVIII 334196 . T C 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=3.134;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=1.147;QD=21.93;ReadPosRankSum=1.683;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3169,372,0 chrVIII 334211 . G A 3091 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.8485;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.90;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3124,351,0 chrVIII 334346 . A T 3481.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.84;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3481,387,0 chrVIII 335025 . G C 4893.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4893,558,0 chrVIII 335244 . A G 4996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=18.8233;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.532;QD=21.63;ReadPosRankSum=1.702;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:2,227:231:99:4996,585,0 chrVIII 335297 . T C 5021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.7993;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.602;QD=21.28;ReadPosRankSum=1.717;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:5021,593,0 chrVIII 335553 . G A 7581.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=14.5999;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-3.867e+03 GT:AD:DP:GQ:PL 1/1:0,332:332:99:7581,820,0 chrVIII 335688 . T C 5694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=285;Dels=0.00;FS=4.695;HaplotypeScore=22.1063;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-1.157;QD=19.98;ReadPosRankSum=1.695;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:1,282:285:99:5694,642,0 chrVIII 335780 . T G 5485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=251;Dels=0.00;FS=8.278;HaplotypeScore=14.3017;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.146;QD=21.85;ReadPosRankSum=2.409;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:2,241:251:99:5485,621,0 chrVIII 335817 . G T 4016.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.3574;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.07;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4016,441,0 chrVIII 335859 . C T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=19.77;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3301,369,0 chrVIII 335869 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.7359;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=18.74;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3088,339,0 chrVIII 335882 . C T 2854 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=17.40;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2887,318,0 chrVIII 335894 . A G 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=163;Dels=0.00;FS=5.721;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;MQRankSum=-1.863;QD=16.48;ReadPosRankSum=2.919;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:3,159:163:99:2719,312,0 chrVIII 335925 . C T 2554 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;QD=15.77;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2587,288,0 chrVIII 335951 . A G 2545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.745;DP=154;Dels=0.00;FS=5.842;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;MQRankSum=-0.405;QD=16.53;ReadPosRankSum=2.955;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:2578,297,0 chrVIII 335964 . G A 2844 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=18.23;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2877,315,0 chrVIII 335985 . C A 2903 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=18.26;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:2936,321,0 chrVIII 336110 . T C 2224 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=21.18;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2257,258,0 chrVIII 336130 . T C 1649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;MQRankSum=-1.421;QD=18.32;ReadPosRankSum=1.693;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1682,198,0 chrVIII 336133 . C T 1557 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=17.49;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1590,177,0 chrVIII 336696 . C T 4356.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4356,486,0 chrVIII 336765 . T C 3122 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.09;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3155,357,0 chrVIII 336991 . A G 3857.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.82;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3857,441,0 chrVIII 337254 . T C 4808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=210;Dels=0.00;FS=3.334;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.423;QD=22.90;ReadPosRankSum=1.682;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:4808,540,0 chrVIII 337281 . C T 4939.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.87;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4939,540,0 chrVIII 337515 . G T 4796.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.86;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4796,534,0 chrVIII 338239 . T C 2593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.192;QD=22.16;ReadPosRankSum=1.703;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2626,300,0 chrVIII 338392 . G A 3309.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.63;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3309,369,0 chrVIII 339120 . G A 4138.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4138,453,0 chrVIII 339175 . C T 3472.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.40;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3472,378,0 chrVIII 339361 . C T 4491.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.39;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4491,495,0 chrVIII 339601 . A C 5949.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=18.8244;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.63;SB=-3.097e+03 GT:AD:DP:GQ:PL 1/1:0,270:275:99:5949,684,0 chrVIII 339642 . C T 5561.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=16.5376;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.18;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5561,609,0 chrVIII 339915 . C T 2508 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.73;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2541,282,0 chrVIII 340031 . T A 1093 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=18.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1126,123,0 chrVIII 340175 . C T 2779 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.874;QD=26.47;ReadPosRankSum=1.270;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2812,309,0 chrVIII 340300 . C T 2170 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.09;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2203,246,0 chrVIII 340739 . A G 4113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=187;Dels=0.00;FS=3.129;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=1.189;QD=21.99;ReadPosRankSum=1.638;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4113,465,0 chrVIII 340832 . A G 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=3.185;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.273;QD=20.74;ReadPosRankSum=1.709;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3206,378,0 chrVIII 341299 . T C 6637.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.94;SB=-3.107e+03 GT:AD:DP:GQ:PL 1/1:0,317:317:99:6637,785,0 chrVIII 341319 . G A 6557.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=13.7903;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.22;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,308:309:99:6557,726,0 chrVIII 341482 . T C 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=217;Dels=0.00;FS=5.441;HaplotypeScore=6.3300;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=0.439;QD=13.47;ReadPosRankSum=1.700;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:2956,351,0 chrVIII 341488 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=15.30;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:3304,366,0 chrVIII 341742 . T C 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.154;DP=183;Dels=0.00;FS=8.894;HaplotypeScore=11.3358;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=0.501;QD=19.22;ReadPosRankSum=3.326;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:4,179:183:99:3517,405,0 chrVIII 341799 . A T 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=218;Dels=0.00;FS=3.607;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=1.430;QD=17.91;ReadPosRankSum=1.716;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:3904,435,0 chrVIII 341814 . G A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=16.91;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:3822,432,0 chrVIII 341877 . C T 4346.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=17.31;SB=-3.224e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:4346,483,0 chrVIII 341892 . T C 4830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.334;DP=252;Dels=0.00;FS=4.525;HaplotypeScore=13.8550;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-0.116;QD=19.17;ReadPosRankSum=3.426;SB=-2.985e+03 GT:AD:DP:GQ:PL 1/1:4,244:252:99:4830,543,0 chrVIII 342157 . G C 3663.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.3914;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.69;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:3663,417,0 chrVIII 342514 . G A 4840.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=12.8036;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4840,546,0 chrVIII 342575 . G A 5503.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=13.3451;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.28;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5503,603,0 chrVIII 343035 . A C 4086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=186;Dels=0.00;FS=2.558;HaplotypeScore=10.4741;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.721;QD=21.97;ReadPosRankSum=2.929;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:3,181:186:99:4086,488,0 chrVIII 343333 . T G 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=158;Dels=0.00;FS=7.510;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.748;QD=22.51;ReadPosRankSum=2.418;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3557,417,0 chrVIII 343392 . G C 2790 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,126:130:99:2823,318,0 chrVIII 343561 . G A 2317 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2350,258,0 chrVIII 343749 . T A 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.087;QD=24.83;ReadPosRankSum=1.698;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2566,282,0 chrVIII 343826 . G A 3835.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=16.0073;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3835,423,0 chrVIII 344483 . C T 2634 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2667,294,0 chrVIII 344834 . C T 3357.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3357,372,0 chrVIII 344900 . C A 3110 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.87;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3143,348,0 chrVIII 344942 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.07;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3263,363,0 chrVIII 345018 . C A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3674,399,0 chrVIII 345071 . C A 4431.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.4795;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.20;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4431,492,0 chrVIII 345359 . T C 3499.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.3206;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.70;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3499,405,0 chrVIII 345623 . G A 3530.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.27;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3530,393,0 chrVIII 346156 . C T 4701.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.71;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4701,510,0 chrVIII 346315 . G T 4810.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.35;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4810,534,0 chrVIII 346538 . C A 3634.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.60;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3634,393,0 chrVIII 346877 . T G 2755 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.5962;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.52;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2788,321,0 chrVIII 347320 . A T 2948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3494;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=1.112;QD=23.97;ReadPosRankSum=1.704;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2981,327,0 chrVIII 347350 . G A 2386 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.93;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2419,270,0 chrVIII 347353 . C T 2469 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.02;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.28;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2502,270,0 chrVIII 347674 . A G 2700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=116;Dels=0.00;FS=3.629;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.015;QD=23.28;ReadPosRankSum=1.701;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,112:116:99:2733,309,0 chrVIII 347899 . T A 3294.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=24.22;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3294,357,0 chrVIII 348037 . G C 3202 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.9248;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=17.99;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,174:178:99:3235,372,0 chrVIII 348041 . A C 3373.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=18.53;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3373,375,0 chrVIII 348142 . G A 3286.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=21.48;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3286,357,0 chrVIII 348154 . C A 3096 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=19.85;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3129,357,0 chrVIII 348178 . T C 2910 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.7409;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=17.64;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:2943,348,0 chrVIII 348194 . G T 3036 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=18.51;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3069,339,0 chrVIII 348326 . A C 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=150;Dels=0.00;FS=6.050;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=1.436;QD=22.25;ReadPosRankSum=2.900;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:3337,375,0 chrVIII 348442 . T A 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=104;Dels=0.00;FS=3.736;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=1.466;QD=21.18;ReadPosRankSum=1.632;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2236,249,0 chrVIII 348455 . C A 2106 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=22.65;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2139,237,0 chrVIII 348461 . G A 2030 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=21.60;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2063,228,0 chrVIII 348462 . T C 1975 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=21.24;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2008,228,0 chrVIII 348572 . G A 3188 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=24.34;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3221,357,0 chrVIII 348634 . G T 2889 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.8784;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.89;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2922,330,0 chrVIII 348790 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.99;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3268,378,0 chrVIII 348802 . A G 3062 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.12;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3095,357,0 chrVIII 348868 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=17.44;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2492,273,0 chrVIII 348883 . T C 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.8017;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.713;QD=19.22;ReadPosRankSum=1.687;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2973,330,0 chrVIII 348973 . A C 2971 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=20.63;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3004,354,0 chrVIII 348982 . A G 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=143;Dels=0.00;FS=3.039;HaplotypeScore=7.0885;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=0.834;QD=20.15;ReadPosRankSum=2.346;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2915,330,0 chrVIII 349120 . G A 4317.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.59;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4317,471,0 chrVIII 349353 . G A 3503.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2998;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.46;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3503,381,0 chrVIII 349489 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.02;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3339,372,0 chrVIII 349648 . T G 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.964;HaplotypeScore=5.1269;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.317;QD=22.14;ReadPosRankSum=1.683;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3177,360,0 chrVIII 349745 . C G 2592 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.4630;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=17.17;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2625,297,0 chrVIII 349748 . A G 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=4.685;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=0.162;QD=17.39;ReadPosRankSum=1.663;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2642,300,0 chrVIII 349882 . G A 2881 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.5537;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.33;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2914,318,0 chrVIII 349912 . A C 2706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.00;FS=3.206;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.688;QD=19.75;ReadPosRankSum=-0.841;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2739,315,0 chrVIII 350566 . T C 2198 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2231,264,0 chrVIII 350971 . T C 2881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.4719;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.604;QD=21.83;ReadPosRankSum=1.706;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2914,333,0 chrVIII 351568 . C T 3277.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.9369;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=23.92;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3277,360,0 chrVIII 351601 . T C 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.604;QD=19.42;ReadPosRankSum=1.705;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2557,306,0 chrVIII 351610 . T C 2314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-0.915;QD=18.66;ReadPosRankSum=1.676;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2347,270,0 chrVIII 351767 . C T 3355.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4177;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.46;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3355,363,0 chrVIII 351784 . G A 3188 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.14;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3221,348,0 chrVIII 351889 . G A 5935.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=18.0141;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.40;SB=-3.149e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:5935,660,0 chrVIII 352207 . C T 5221.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.50;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:5221,579,0 chrVIII 352280 . A C 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=135;Dels=0.00;FS=2.654;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.537;QD=20.95;ReadPosRankSum=2.413;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2861,342,0 chrVIII 352327 . A C 2159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.621;QD=20.37;ReadPosRankSum=2.403;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:2,103:106:99:2192,252,0 chrVIII 352450 . A G 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=5.3788;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=-1.470;QD=20.31;ReadPosRankSum=2.406;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2348,270,0 chrVIII 352507 . G T 1492 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.33;MQ0=0;QD=13.94;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,104:107:99:1525,168,0 chrVIII 352512 . A G 1340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=5.332;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.38;MQ0=0;MQRankSum=-1.417;QD=13.54;ReadPosRankSum=1.697;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1373,159,0 chrVIII 352521 . C T 1286 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=84.9184;MLEAC=2;MLEAF=1.00;MQ=32.10;MQ0=0;QD=12.99;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1319,147,0 chrVIII 352555 . C A 1746 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;QD=15.32;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1779,195,0 chrVIII 352685 . C A 3642.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2612;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=24.78;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3642,399,0 chrVIII 352817 . T C 4306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=178;Dels=0.00;FS=2.847;HaplotypeScore=9.8633;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.340;QD=24.19;ReadPosRankSum=2.352;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4306,489,0 chrVIII 353157 . A G 3883.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.1419;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.45;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3883,444,0 chrVIII 353534 . A T 3002 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3035,333,0 chrVIII 353651 . C T 3572.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.30;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3572,399,0 chrVIII 353709 . T C 3772.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4272;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3772,423,0 chrVIII 353911 . A G 3654.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3654,426,0 chrVIII 354035 . T G 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=3.310;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.597;QD=22.21;ReadPosRankSum=1.713;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3997,453,0 chrVIII 354125 . T C 4089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.097;QD=22.59;ReadPosRankSum=1.713;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4089,471,0 chrVIII 354485 . C T 3058 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3091,339,0 chrVIII 354573 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.235;QD=23.25;ReadPosRankSum=1.668;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3789,426,0 chrVIII 354672 . T G 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.265;QD=21.77;ReadPosRankSum=1.711;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3548,402,0 chrVIII 354747 . C T 4295.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.68;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4295,471,0 chrVIII 355175 . C T 3932.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.0382;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.27;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3932,429,0 chrVIII 355671 . C A 3960.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.6818;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.29;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3960,429,0 chrVIII 355703 . T G 4522.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.19;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4522,516,0 chrVIII 355733 . T C 4470.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.4138;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.39;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4470,519,0 chrVIII 355751 . G A 4572.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.2349;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.57;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4572,510,0 chrVIII 356131 . G C 3488.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.80;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3488,402,0 chrVIII 356232 . C T 2865 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=20.61;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2898,321,0 chrVIII 356260 . T C 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=145;Dels=0.00;FS=5.986;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=-0.128;QD=18.12;ReadPosRankSum=2.866;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:3,139:145:99:2660,309,0 chrVIII 356286 . C T 2135 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=14.93;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2168,237,0 chrVIII 356291 . T C 2036 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=14.65;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2069,234,0 chrVIII 357046 . C T 2863 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2896,318,0 chrVIII 357662 . T A 3743.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.96;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3743,417,0 chrVIII 357700 . G A 4143.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.09;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4143,462,0 chrVIII 357943 . C T 3158 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.47;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3191,345,0 chrVIII 358013 . A G 2700 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2733,315,0 chrVIII 358204 . C T 2808 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.02;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2841,306,0 chrVIII 358619 . A G 2024 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.00;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2057,243,0 chrVIII 358703 . A G 2233 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=21.47;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2266,255,0 chrVIII 358706 . T A 2266 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=4.065;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;MQRankSum=-1.664;QD=22.22;ReadPosRankSum=1.698;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2299,252,0 chrVIII 358707 . T C 2197 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.241;DP=106;Dels=0.00;FS=16.472;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;MQRankSum=-0.356;QD=20.73;ReadPosRankSum=3.357;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:4,102:106:99:2230,249,0 chrVIII 358745 . G A 2558 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.14;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2591,285,0 chrVIII 358841 . G A 3514.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=24.23;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3514,390,0 chrVIII 358895 . T G 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.048;DP=172;Dels=0.00;FS=7.487;HaplotypeScore=15.8649;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.123;QD=21.56;ReadPosRankSum=4.040;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:6,163:172:99:3708,429,0 chrVIII 358974 . T C 5101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.268;DP=226;Dels=0.00;FS=5.066;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.451;QD=22.57;ReadPosRankSum=3.391;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:4,222:226:99:5101,582,0 chrVIII 359083 . G A 5328.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.89;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5328,594,0 chrVIII 359105 . G A 4879.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=24.03;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4879,534,0 chrVIII 359203 . C T 5289.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.8228;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.15;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5289,591,0 chrVIII 359316 . T C 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=131;Dels=0.00;FS=2.985;HaplotypeScore=117.5633;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=1.401;QD=21.11;ReadPosRankSum=2.297;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:2,127:131:99:2798,318,0 chrVIII 359540 . T A 1798 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;QD=21.66;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1831,201,0 chrVIII 359563 . A G 2182 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=0;QD=23.21;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2215,246,0 chrVIII 359581 . A G 1840 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.07;MQ0=0;QD=21.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1873,210,0 chrVIII 359669 . T G 1320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=0.208;QD=17.60;ReadPosRankSum=1.686;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1353,165,0 chrVIII 359915 . A G 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=197;Dels=0.00;FS=3.650;HaplotypeScore=16.7217;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.679;QD=21.13;ReadPosRankSum=1.714;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4163,494,0 chrVIII 360002 . T C 4682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=218;Dels=0.00;FS=9.139;HaplotypeScore=10.0658;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=1.716;QD=21.48;ReadPosRankSum=3.292;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:4,213:218:99:4682,540,0 chrVIII 360080 . C T 3531.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.8250;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=19.09;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3531,393,0 chrVIII 360186 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.7885;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.64;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3509,387,0 chrVIII 360259 . T C 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=125;Dels=0.00;FS=3.495;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=0.493;QD=19.99;ReadPosRankSum=1.704;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2532,288,0 chrVIII 360262 . C T 2537 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=20.13;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2570,282,0 chrVIII 360339 . A G 2245 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.9609;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=20.98;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2278,261,0 chrVIII 360447 . A G 2267 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.2086;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=23.61;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2300,261,0 chrVIII 360488 . T G 2071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=98;Dels=0.00;FS=3.957;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=0.268;QD=21.13;ReadPosRankSum=1.696;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2104,243,0 chrVIII 360543 . G A 1923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.232;DP=98;Dels=0.00;FS=3.336;HaplotypeScore=14.5450;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=0.411;QD=19.62;ReadPosRankSum=1.089;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1956,213,0 chrVIII 360663 . C T 2349 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.73;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2382,261,0 chrVIII 360689 . A G 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=4.503;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.913;QD=21.64;ReadPosRankSum=1.606;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2435,279,0 chrVIII 360746 . G A 1945 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=6.7724;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.26;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1978,213,0 chrVIII 360898 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.79;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2863,315,0 chrVIII 360906 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.77;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2983,327,0 chrVIII 361476 . T C 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=170;Dels=0.00;FS=2.584;HaplotypeScore=11.2613;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-0.551;QD=22.99;ReadPosRankSum=2.839;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:3,165:170:99:3908,441,0 chrVIII 361569 . C T 2974 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.09;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3007,327,0 chrVIII 361697 . A C 1089 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=7.56;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:1122,126,0 chrVIII 361761 . T C 1947 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.37;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1980,222,0 chrVIII 362829 . G A 2943 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.63;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2976,321,0 chrVIII 362833 . C T 2993 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=18.14;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3026,330,0 chrVIII 363155 . T C 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1542;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=1.118;QD=20.15;ReadPosRankSum=1.644;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3216,357,0 chrVIII 363169 . C T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.47;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3543,387,0 chrVIII 363494 . C G 5153.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.0482;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.93;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5153,588,0 chrVIII 363626 . G A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.62;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3671,399,0 chrVIII 363629 . G A 3637.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.32;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3637,399,0 chrVIII 363695 . A G 4941.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.30;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,252:256:99:4941,573,0 chrVIII 363803 . C G 3227.04 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=22.8717;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.04;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:3260,375,0 chrVIII 364046 . T A 4837.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.1053;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.06;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4837,525,0 chrVIII 364175 . C A 4037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=190;Dels=0.00;FS=3.127;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-0.064;QD=21.25;ReadPosRankSum=-0.742;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4037,450,0 chrVIII 364203 . T C 3587.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=19.28;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:3587,423,0 chrVIII 364222 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=17.10;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:3471,396,0 chrVIII 364330 . A T 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=184;Dels=0.00;FS=6.053;HaplotypeScore=7.6583;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.425;QD=21.60;ReadPosRankSum=2.939;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:3975,432,0 chrVIII 364427 . C A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=22.53;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3582,393,0 chrVIII 364439 . A G 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-0.178;QD=20.14;ReadPosRankSum=1.648;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3323,390,0 chrVIII 364600 . C G 2529 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.4408;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.07;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2562,294,0 chrVIII 364680 . C A 3191 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.2992;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.47;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3224,354,0 chrVIII 364692 . T C 2731 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.34;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2764,324,0 chrVIII 364782 . G A 2752 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.52;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2785,309,0 chrVIII 364974 . G C 2882 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8764;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.17;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2915,327,0 chrVIII 365187 . C T 3763.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=22.81;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3763,417,0 chrVIII 365208 . G A 4172.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=22.67;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4172,462,0 chrVIII 365358 . A G 4444.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=19.93;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4444,539,0 chrVIII 365376 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.851;DP=179;Dels=0.00;FS=6.950;HaplotypeScore=6.8991;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;MQRankSum=-0.502;QD=19.11;ReadPosRankSum=-1.470;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:7,172:179:99:3421,375,0 chrVIII 365403 . G A 1485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=6.979;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=129.9679;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;MQRankSum=-2.790;QD=10.10;ReadPosRankSum=2.423;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:48,99:147:99:1518,149,0 chrVIII 365406 . G A 1091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.306;DP=141;Dels=0.00;FS=8.047;HaplotypeScore=122.0782;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;MQRankSum=-4.575;QD=7.74;ReadPosRankSum=3.602;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:19,122:141:91:1124,91,0 chrVIII 365418 . G A 96.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.345;DP=136;Dels=0.00;FS=11.592;HaplotypeScore=169.5934;MLEAC=1;MLEAF=0.500;MQ=41.46;MQ0=0;MQRankSum=6.652;QD=0.71;ReadPosRankSum=2.367;SB=-8.240e+02 GT:AD:DP:GQ:PL 0/1:52,84:136:99:126,0,284 chrVIII 365421 . G A 407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=7.149;DP=130;Dels=0.00;FS=10.345;HaplotypeScore=94.8846;MLEAC=2;MLEAF=1.00;MQ=41.75;MQ0=0;MQRankSum=5.277;QD=3.13;ReadPosRankSum=4.030;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:29,100:130:48:440,48,0 chrVIII 365430 . A C 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.726;DP=141;Dels=0.00;FS=1.206;HaplotypeScore=31.9838;MLEAC=1;MLEAF=0.500;MQ=44.12;MQ0=0;MQRankSum=-3.919;QD=0.25;ReadPosRankSum=-2.045;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:130,11:141:65:65,0,526 chrVIII 365895 . G A 5166.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.92;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:5166,573,0 chrVIII 365964 . T G 6219.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.29;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,278:279:99:6219,731,0 chrVIII 366137 . T C 6684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=296;Dels=0.00;FS=6.645;HaplotypeScore=14.9330;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.397;QD=22.58;ReadPosRankSum=2.375;SB=-3.399e+03 GT:AD:DP:GQ:PL 1/1:2,294:296:99:6684,774,0 chrVIII 366283 . C T 6052.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=16.4387;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.83;SB=-3.095e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:6052,654,0 chrVIII 366416 . G A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=19.91;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3563,390,0 chrVIII 366445 . C T 3360.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.09;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3360,366,0 chrVIII 366747 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.5409;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.26;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3269,369,0 chrVIII 366783 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.9625;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.302;QD=23.60;ReadPosRankSum=1.687;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3611,411,0 chrVIII 367035 . G A 3225.28 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.54;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3258,360,0 chrVIII 367080 . A G 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.956;DP=160;Dels=0.00;FS=9.801;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.924;QD=21.62;ReadPosRankSum=2.917;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:3,155:160:99:3459,408,0 chrVIII 367326 . A T 2851 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.5401;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.28;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2884,321,0 chrVIII 368304 . C A 2815 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.89;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2848,312,0 chrVIII 368538 . C T 2575 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=22.59;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2608,288,0 chrVIII 368547 . A C 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=9.466;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.824;QD=20.55;ReadPosRankSum=2.406;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2335,276,0 chrVIII 368559 . C T 2478 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.65;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2511,276,0 chrVIII 368646 . T C 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=158;Dels=0.00;FS=2.765;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.086;QD=23.72;ReadPosRankSum=2.356;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3748,426,0 chrVIII 368793 . C T 4200.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=16.0598;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.83;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4200,465,0 chrVIII 368916 . A G 5588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=247;Dels=0.00;FS=4.564;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.239;QD=22.62;ReadPosRankSum=1.662;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:1,245:247:99:5588,639,0 chrVIII 369483 . T A 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=2.844;HaplotypeScore=5.5272;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.483;QD=20.61;ReadPosRankSum=2.351;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3124,342,0 chrVIII 369501 . A G 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=4.094;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=0.832;QD=18.27;ReadPosRankSum=1.665;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2846,330,0 chrVIII 369871 . C T 3085 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.6086;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.16;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3118,342,0 chrVIII 369898 . G A 3095 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.95;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3128,342,0 chrVIII 369981 . T C 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.146;QD=24.00;ReadPosRankSum=1.683;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3408,390,0 chrVIII 370010 . A C 2776 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.8653;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.21;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2809,324,0 chrVIII 370447 . T C 1647 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.34;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1680,207,0 chrVIII 370560 . A G 96.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.886;DP=19;Dels=0.00;FS=24.123;HaplotypeScore=4.9730;MLEAC=1;MLEAF=0.500;MQ=50.83;MQ0=0;MQRankSum=0.482;QD=5.05;ReadPosRankSum=-2.324;SB=0.072 GT:AD:DP:GQ:PL 0/1:6,13:19:25:126,0,25 chrVIII 370564 . A G 171.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.436;DP=22;Dels=0.00;FS=21.239;HaplotypeScore=10.7216;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.041;QD=7.77;ReadPosRankSum=-3.344;SB=3.38 GT:AD:DP:GQ:PL 1/1:5,16:22:24:204,24,0 chrVIII 370657 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.39;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1764,201,0 chrVIII 370683 . C T 1355 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=19.64;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1388,150,0 chrVIII 370697 . T C 1030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;MQRankSum=0.241;QD=14.31;ReadPosRankSum=1.636;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1063,123,0 chrVIII 370707 . C T 921 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=14.17;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:954,105,0 chrVIII 370842 . G C 3157 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.92;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3190,372,0 chrVIII 370980 . G A 5001.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=25.78;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:5001,543,0 chrVIII 371481 . A G 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=145;Dels=0.00;FS=2.979;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.246;QD=21.34;ReadPosRankSum=2.398;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:3128,354,0 chrVIII 371744 . G A 1855 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=19.73;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1888,210,0 chrVIII 371755 . A G 1869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=4.291;HaplotypeScore=8.0835;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-0.295;QD=19.67;ReadPosRankSum=1.622;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1902,213,0 chrVIII 371949 . C T 4474.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.7228;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.42;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4474,501,0 chrVIII 372114 . C T 5037.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.3741;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.22;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5037,555,0 chrVIII 372189 . T C 4623.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=16.1667;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.77;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4623,534,0 chrVIII 372378 . G A 3924.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.55;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3924,426,0 chrVIII 372390 . T G 3405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=172;Dels=0.00;FS=3.270;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=1.329;QD=19.80;ReadPosRankSum=1.208;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3405,377,0 chrVIII 372470 . T A 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=139;Dels=0.00;FS=3.374;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.341;QD=21.46;ReadPosRankSum=1.707;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3016,330,0 chrVIII 372533 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=153;Dels=0.00;FS=3.030;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-0.008;QD=21.62;ReadPosRankSum=2.385;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3308,375,0 chrVIII 372577 . G C 3397.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.64;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3397,390,0 chrVIII 372678 . A T 3769.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=22.30;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3769,414,0 chrVIII 372695 . T C 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=170;Dels=0.00;FS=3.010;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;MQRankSum=-1.563;QD=20.27;ReadPosRankSum=2.421;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3446,393,0 chrVIII 372705 . C A 4063.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.4028;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=21.16;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4063,444,0 chrVIII 372739 . T C 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.973;DP=213;Dels=0.00;FS=10.792;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;MQRankSum=-1.462;QD=16.08;ReadPosRankSum=4.169;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:6,206:213:99:3425,393,0 chrVIII 372741 . G A 3599.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=16.98;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:3599,393,0 chrVIII 372769 . T C 4066.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.48;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4066,456,0 chrVIII 372964 . T C 5112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=249;Dels=0.00;FS=8.056;HaplotypeScore=18.5605;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=-0.482;QD=20.53;ReadPosRankSum=2.430;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:2,245:249:99:5112,579,0 chrVIII 373115 . A T 3491.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=18.37;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3491,393,0 chrVIII 373116 . T G 3394.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=17.86;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:3394,393,0 chrVIII 373555 . C T 4019.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4019,441,0 chrVIII 373666 . G A 3702.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.57;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3702,414,0 chrVIII 374512 . G A 4649.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.5099;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.72;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4649,510,0 chrVIII 374774 . A G 4406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=227;Dels=0.00;FS=5.807;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=-1.562;QD=19.41;ReadPosRankSum=2.969;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:3,224:227:99:4406,507,0 chrVIII 374792 . A G 4064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-0.350;QD=19.08;ReadPosRankSum=1.716;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4064,468,0 chrVIII 374794 . T C 3973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.722;DP=217;Dels=0.00;FS=15.772;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=-0.861;QD=18.31;ReadPosRankSum=3.715;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:5,212:217:99:3973,471,0 chrVIII 375097 . C G 4871.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.9327;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.46;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4871,578,0 chrVIII 375110 . T C 5164.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.34;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5164,597,0 chrVIII 375188 . G A 4184.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.35;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4184,462,0 chrVIII 375312 . C T 4420.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.18;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4420,492,0 chrVIII 375520 . A G 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=116;Dels=0.00;FS=5.090;HaplotypeScore=12.6873;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.904;QD=16.49;ReadPosRankSum=-1.701;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:2,112:116:99:1946,234,0 chrVIII 375560 . T G 2696 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.06;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2729,312,0 chrVIII 375647 . T C 2645 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=24.05;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2678,309,0 chrVIII 375686 . A C 2576 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=21.83;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2609,300,0 chrVIII 375703 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=20.57;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2234,249,0 chrVIII 375725 . C T 1919 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=18.45;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:1952,216,0 chrVIII 375742 . A G 1731 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=16.64;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:1764,207,0 chrVIII 375825 . T C 2453 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.71;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2486,288,0 chrVIII 375943 . A G 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=139;Dels=0.00;FS=4.124;HaplotypeScore=11.0234;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-0.038;QD=21.37;ReadPosRankSum=1.707;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3004,345,0 chrVIII 376014 . T C 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.058;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.9237;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.484;QD=19.85;ReadPosRankSum=2.517;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2475,273,0 chrVIII 376182 . G A 3086 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.4349;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.20;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3119,348,0 chrVIII 376320 . G C 2881 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2914,324,0 chrVIII 376425 . C T 2960 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.87;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2993,333,0 chrVIII 377022 . A G 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=150;Dels=0.00;FS=2.944;HaplotypeScore=6.4442;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=0.457;QD=22.21;ReadPosRankSum=2.400;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:2,146:150:99:3332,375,0 chrVIII 377068 . C G 2842 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.21;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2875,327,0 chrVIII 377086 . G C 2641 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=22.01;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2674,303,0 chrVIII 377259 . G A 2294 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=22.06;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2327,252,0 chrVIII 377268 . T C 2084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=104;Dels=0.00;FS=7.332;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=0.036;QD=20.04;ReadPosRankSum=2.402;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2117,240,0 chrVIII 377320 . G A 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.990;DP=108;Dels=0.00;FS=7.580;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=1.691;QD=19.95;ReadPosRankSum=2.059;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2188,240,0 chrVIII 377322 . A G 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=113;Dels=0.00;FS=7.549;HaplotypeScore=2.7464;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=1.953;QD=18.71;ReadPosRankSum=2.179;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:2,107:113:99:2147,240,0 chrVIII 377373 . A G 3304.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.27;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3304,392,0 chrVIII 377460 . A G 2689 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=20.07;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2722,306,0 chrVIII 377463 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=20.75;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2814,309,0 chrVIII 377707 . C T 2942 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=20.43;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2975,324,0 chrVIII 377712 . G A 2934 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=20.37;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2967,324,0 chrVIII 377752 . G C 2384 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.0044;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.06;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:2417,279,0 chrVIII 377834 . G C 2335 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=134.0341;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=14.87;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2368,270,0 chrVIII 377956 . T C 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=130;Dels=0.00;FS=3.182;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;MQRankSum=-0.953;QD=20.92;ReadPosRankSum=1.705;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2753,327,0 chrVIII 378024 . T A 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=132;Dels=0.00;FS=3.040;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;MQRankSum=0.289;QD=19.17;ReadPosRankSum=2.412;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2564,285,0 chrVIII 378025 . A G 2480 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=19.22;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2513,285,0 chrVIII 378065 . A G 2966 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=18.20;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:2999,351,0 chrVIII 378101 . C T 2546 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.4303;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=16.43;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2579,279,0 chrVIII 378194 . T C 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.514;QD=19.07;ReadPosRankSum=1.351;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3470,390,0 chrVIII 378228 . A G 4674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=234;Dels=0.00;FS=15.630;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=2.157;QD=19.97;ReadPosRankSum=2.742;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:3,227:234:99:4674,522,0 chrVIII 378234 . A G 4438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=239;Dels=0.00;FS=5.341;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-1.644;QD=18.57;ReadPosRankSum=1.703;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,235:239:99:4438,530,0 chrVIII 378273 . A G 4921.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=243;Dels=0.00;FS=5.048;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=0.577;QD=20.25;ReadPosRankSum=1.704;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:4921,552,0 chrVIII 378579 . G A 4776.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.01;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4776,531,0 chrVIII 378618 . T C 3658.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.67;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3658,429,0 chrVIII 378642 . A C 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=183;Dels=0.00;FS=2.780;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.931;QD=19.50;ReadPosRankSum=2.422;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:2,178:183:99:3569,425,0 chrVIII 378725 . C T 3781.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.92;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3781,420,0 chrVIII 378942 . G A 5767.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=8.1946;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5767,642,0 chrVIII 379379 . C T 3388.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.05;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3388,375,0 chrVIII 379684 . T C 5098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.345;DP=244;Dels=0.00;FS=9.010;HaplotypeScore=18.0809;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=1.168;QD=20.89;ReadPosRankSum=3.294;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:4,237:244:99:5098,573,0 chrVIII 379913 . A G 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=175;Dels=0.01;FS=2.670;HaplotypeScore=15.4940;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=0.078;QD=15.83;ReadPosRankSum=2.364;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:2804,327,0 chrVIII 379965 . C T 2355 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.6475;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=13.77;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2388,270,0 chrVIII 380069 . G A 3412.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.60;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3412,372,0 chrVIII 380124 . A C 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=144;Dels=0.00;FS=7.586;HaplotypeScore=12.9814;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-1.281;QD=22.30;ReadPosRankSum=2.415;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3244,366,0 chrVIII 380309 . T C 3023 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.80;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3056,348,0 chrVIII 380378 . A T 2840 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.90;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2873,312,0 chrVIII 380481 . T G 3737.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.8421;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.50;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3737,426,0 chrVIII 380530 . A G 3309.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.51;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3309,390,0 chrVIII 380542 . T C 3141 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.60;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3174,363,0 chrVIII 380685 . A G 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.571;QD=20.30;ReadPosRankSum=2.417;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3098,348,0 chrVIII 380748 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=15.2784;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.20;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3185,348,0 chrVIII 380790 . G A 3108 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.02;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3141,345,0 chrVIII 381118 . A G 2874 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.81;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2907,327,0 chrVIII 381482 . C T 1272 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.8554;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;QD=14.62;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1305,153,0 chrVIII 381507 . C T 1358 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;QD=15.61;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1391,156,0 chrVIII 381514 . C G 1241 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;QD=15.13;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1274,150,0 chrVIII 381521 . T A 1218 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=0;QD=15.42;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1251,138,0 chrVIII 381527 . T A 1161 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=14.33;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1194,132,0 chrVIII 381677 . G A 2458 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=21.95;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2491,273,0 chrVIII 381679 . G A 2192 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=20.30;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2225,249,0 chrVIII 381761 . T A 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=1.102;QD=20.43;ReadPosRankSum=1.687;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1606,177,0 chrVIII 381772 . A T 1722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.456;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=1.014;QD=21.00;ReadPosRankSum=1.605;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1755,195,0 chrVIII 381790 . T C 1780 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.00;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1813,207,0 chrVIII 383951 . G A 3447.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=15.6619;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.83;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3447,390,0 chrVIII 384585 . G T 4322.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.7449;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.88;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4322,471,0 chrVIII 384869 . C T 2695 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.91;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2728,294,0 chrVIII 385829 . T C 5430.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.82;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5430,621,0 chrVIII 387780 . C T 2347 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.20;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2380,258,0 chrVIII 388052 . A G 5172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=265;Dels=0.00;FS=3.641;HaplotypeScore=20.1481;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-0.823;QD=19.52;ReadPosRankSum=1.612;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:1,258:265:99:5172,579,0 chrVIII 388085 . A G 4211.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=12.1328;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-1.103;QD=16.13;ReadPosRankSum=-0.475;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:1,258:261:99:4211,483,0 chrVIII 388103 . T C 4289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=293;Dels=0.00;FS=3.725;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.072;QD=14.64;ReadPosRankSum=1.720;SB=-3.115e+03 GT:AD:DP:GQ:PL 1/1:1,289:293:99:4289,501,0 chrVIII 388791 . C A 4102.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=25.48;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4102,447,0 chrVIII 389030 . C G 307 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.76;MQ0=0;QD=8.53;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:39:340,39,0 chrVIII 389050 . A G 558 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.30;MQ0=0;QD=16.41;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,33:34:66:591,66,0 chrVIII 390561 . T C 3845.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.9587;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.62;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3845,441,0 chrVIII 390846 . C T 2751 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.31;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2784,303,0 chrVIII 390900 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2943,321,0 chrVIII 391437 . A T 2975 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.80;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3008,330,0 chrVIII 391670 . C A 1240 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.3829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1273,141,0 chrVIII 392040 . G A 1046 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1079,120,0 chrVIII 392043 . T C 1056 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1089,126,0 chrVIII 392078 . G C 702 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=10.80;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:84:735,84,0 chrVIII 392297 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=23.33;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2646,297,0 chrVIII 392401 . C T 1915 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=23.07;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1948,210,0 chrVIII 392456 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.96;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2237,243,0 chrVIII 392524 . C T 2149 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.8131;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.86;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2182,243,0 chrVIII 392676 . T C 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.255;QD=22.20;ReadPosRankSum=1.682;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3097,354,0 chrVIII 393291 . C T 3326.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3326,363,0 chrVIII 393734 . T C 3971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=21.1302;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.209;QD=19.18;ReadPosRankSum=1.699;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:3971,468,0 chrVIII 394605 . C T 4964.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.0113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4964,543,0 chrVIII 395596 . A C 4517.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.8776;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.59;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4517,533,0 chrVIII 397056 . A G 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=4.983;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.962;QD=23.88;ReadPosRankSum=1.540;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3042,351,0 chrVIII 399258 . A G 1763 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.24;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1796,204,0 chrVIII 399316 . T C 1880 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.61;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1913,216,0 chrVIII 399367 . G A 2908 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.23;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2941,318,0 chrVIII 399484 . T G 2583 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.71;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2616,297,0 chrVIII 399628 . A C 2498 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=18.78;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2531,294,0 chrVIII 399631 . T A 2740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=134;Dels=0.00;FS=2.988;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=-1.840;QD=20.45;ReadPosRankSum=2.357;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2773,306,0 chrVIII 400015 . A G 4179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=189;Dels=0.00;FS=2.748;HaplotypeScore=13.3549;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.084;QD=22.11;ReadPosRankSum=2.346;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4179,474,0 chrVIII 400069 . A G 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.4082;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.194;QD=21.66;ReadPosRankSum=1.689;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3488,402,0 chrVIII 400618 . C T 6051.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.30;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:6051,669,0 chrVIII 400642 . A T 6205.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=11.7212;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.81;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:6205,696,0 chrVIII 400795 . A G 5877.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.53;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:5877,675,0 chrVIII 401172 . C T 3595.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.50;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3595,402,0 chrVIII 401325 . A G 4797.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.17;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4797,546,0 chrVIII 401408 . C T 4909.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.7209;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.95;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4909,537,0 chrVIII 401473 . T G 5217.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5217,603,0 chrVIII 401665 . A T 4838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.5192;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.200;QD=22.40;ReadPosRankSum=2.392;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4838,537,0 chrVIII 401862 . G A 2311 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.3335;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=18.79;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2344,255,0 chrVIII 402478 . T C 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=0.408;QD=22.57;ReadPosRankSum=1.698;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2335,267,0 chrVIII 402502 . T C 2058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=105;Dels=0.00;FS=2.994;HaplotypeScore=14.3198;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=0.556;QD=19.60;ReadPosRankSum=2.402;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:2,102:105:99:2091,237,0 chrVIII 402503 . A T 2088 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=20.08;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2121,234,0 chrVIII 402653 . T A 3165 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.77;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3198,351,0 chrVIII 403585 . T C 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=176;Dels=0.00;FS=3.030;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.096;QD=21.86;ReadPosRankSum=2.352;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3847,441,0 chrVIII 404390 . G A 3518.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.61;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3518,393,0 chrVIII 404429 . T C 3515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.006;QD=23.75;ReadPosRankSum=1.685;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3515,396,0 chrVIII 404513 . G T 2869 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2902,324,0 chrVIII 405630 . T C 1458 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.13;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1491,171,0 chrVIII 405888 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3356,366,0 chrVIII 406060 . G A 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.3307;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.703;QD=22.03;ReadPosRankSum=-0.635;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2699,294,0 chrVIII 406622 . T A 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=3.070;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.878;QD=23.12;ReadPosRankSum=1.708;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3399,378,0 chrVIII 406734 . C T 3496.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.78;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3496,381,0 chrVIII 409404 . C G 2882 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2915,333,0 chrVIII 409692 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.9377;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.445;QD=22.41;ReadPosRankSum=1.709;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,147:151:99:3384,387,0 chrVIII 410489 . T C 3892.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3892,456,0 chrVIII 410727 . C T 3221.92 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3255,354,0 chrVIII 410978 . C T 2503 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.0401;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.18;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2536,282,0 chrVIII 411038 . C T 2115 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.6209;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=22.50;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2148,234,0 chrVIII 411047 . C A 2081 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.23;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2114,234,0 chrVIII 411085 . T C 1740 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.71;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1773,207,0 chrVIII 411130 . G A 2320 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.49;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2353,258,0 chrVIII 411427 . C T 2933 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2966,327,0 chrVIII 412076 . C T 2896 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0785;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.69;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2929,330,0 chrVIII 413311 . C T 3636.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.01;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3636,399,0 chrVIII 415234 . G T 3793.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.19;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3793,423,0 chrVIII 415310 . T C 4112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=189;Dels=0.00;FS=7.609;HaplotypeScore=11.6632;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.500;QD=21.76;ReadPosRankSum=2.385;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4112,465,0 chrVIII 415374 . A G 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=148;Dels=0.00;FS=5.916;HaplotypeScore=12.8091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.163;QD=23.26;ReadPosRankSum=2.953;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:3443,390,0 chrVIII 415507 . T C 3708.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3708,438,0 chrVIII 415815 . A G 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.426;QD=20.52;ReadPosRankSum=1.572;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2700,306,0 chrVIII 416265 . G A 4947.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.49;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4947,546,0 chrVIII 416592 . T C 7438.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.01;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:0,338:338:99:7438,858,0 chrVIII 416601 . G C 7342.01 PASS AC=2;AF=1.00;AN=2;DP=339;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.66;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:0,337:339:99:7342,848,0 chrVIII 416784 . T C 6258.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=15.1603;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.06;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,310:312:99:6258,749,0 chrVIII 416864 . T C 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=185;Dels=0.00;FS=3.035;HaplotypeScore=17.0491;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=1.456;QD=21.76;ReadPosRankSum=2.394;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:2,176:185:99:4025,456,0 chrVIII 417054 . G A 2791 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.07;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2824,312,0 chrVIII 417114 . A G 2845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.025;QD=20.62;ReadPosRankSum=1.707;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2878,324,0 chrVIII 417117 . A G 2625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=131;Dels=0.00;FS=5.949;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.008;QD=20.04;ReadPosRankSum=2.947;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2658,315,0 chrVIII 417310 . G A 3016 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=15.2900;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.54;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3049,339,0 chrVIII 417518 . G A 3892.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.37;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3892,423,0 chrVIII 417602 . C T 4347.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.6401;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.88;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4347,483,0 chrVIII 418197 . C T 4399.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=24.04;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4399,480,0 chrVIII 418718 . A G 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;DP=175;Dels=0.00;FS=2.523;HaplotypeScore=15.0462;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.297;QD=21.08;ReadPosRankSum=2.960;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:3,170:175:99:3689,423,0 chrVIII 418788 . G A 4138.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4138,462,0 chrVIII 418913 . C T 2300 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.50;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2333,255,0 chrVIII 419187 . T G 2530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.197;QD=22.79;ReadPosRankSum=1.669;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2563,294,0 chrVIII 419449 . G A 3077 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.62;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3110,351,0 chrVIII 419557 . T C 3917.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3917,450,0 chrVIII 419617 . G A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3582,396,0 chrVIII 419838 . A G 2854 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2887,333,0 chrVIII 420220 . A C 3096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.169;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.287;QD=22.11;ReadPosRankSum=1.707;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3129,366,0 chrVIII 420248 . A T 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.500;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.339;QD=22.79;ReadPosRankSum=1.640;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3418,378,0 chrVIII 420455 . T G 4436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.698;QD=21.43;ReadPosRankSum=1.682;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4436,525,0 chrVIII 420572 . T G 192.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;DP=201;Dels=0.00;FS=6.051;HaplotypeScore=132.8383;MLEAC=1;MLEAF=0.500;MQ=48.58;MQ0=0;MQRankSum=-3.515;QD=0.96;ReadPosRankSum=3.220;SB=-1.835e+03 GT:AD:DP:GQ:PL 0/1:22,179:201:99:222,0,264 chrVIII 420656 . C T 5114.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.14;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5114,561,0 chrVIII 420778 . G A 4405.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.01;FS=0.000;HaplotypeScore=7.9560;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=20.02;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:4405,480,0 chrVIII 420781 . A G 4182.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=223;Dels=0.00;FS=3.070;HaplotypeScore=8.7446;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;MQRankSum=-0.514;QD=18.75;ReadPosRankSum=1.716;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:1,218:223:99:4182,480,0 chrVIII 420823 . A G 4348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=13.9691;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=0.459;QD=18.42;ReadPosRankSum=-1.303;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:1,233:236:99:4348,515,0 chrVIII 420997 . C T 4611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;MQRankSum=-0.486;QD=21.45;ReadPosRankSum=1.505;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4611,504,0 chrVIII 421000 . T C 4034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=213;Dels=0.00;FS=3.351;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=-0.686;QD=18.94;ReadPosRankSum=1.716;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:4034,476,0 chrVIII 421159 . T C 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=178;Dels=0.00;FS=4.179;HaplotypeScore=8.7601;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.895;QD=19.96;ReadPosRankSum=1.713;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3553,417,0 chrVIII 421234 . C G 3918.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.2968;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.09;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:3918,462,0 chrVIII 421312 . A G 2752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=172;Dels=0.00;FS=5.659;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=0.526;QD=16.00;ReadPosRankSum=2.948;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:2785,324,0 chrVIII 421321 . C T 2881 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=16.95;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2914,324,0 chrVIII 421330 . T C 2780 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=16.35;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2813,321,0 chrVIII 421474 . C T 3450.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.84;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3450,381,0 chrVIII 421507 . T C 3374.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.35;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3374,387,0 chrVIII 421840 . G C 4049.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4049,462,0 chrVIII 422434 . A G 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.218;QD=20.81;ReadPosRankSum=1.645;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2530,288,0 chrVIII 422538 . G A 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.127;DP=138;Dels=0.00;FS=5.315;HaplotypeScore=12.9589;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.707;QD=17.81;ReadPosRankSum=-0.560;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2491,262,0 chrVIII 422832 . A G 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=174;Dels=0.00;FS=6.563;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.304;QD=23.10;ReadPosRankSum=2.379;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:4020,459,0 chrVIII 422992 . A G 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=140;Dels=0.00;FS=2.844;HaplotypeScore=5.4159;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;MQRankSum=0.202;QD=19.44;ReadPosRankSum=2.397;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2754,321,0 chrVIII 423037 . C G 2893 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=104.2991;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=20.23;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2926,336,0 chrVIII 423389 . T C 2164 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.61;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2197,255,0 chrVIII 423426 . G A 2348 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.36;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2381,264,0 chrVIII 423870 . T C 4342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.334;DP=208;Dels=0.00;FS=12.339;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.145;QD=20.88;ReadPosRankSum=3.368;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:4,204:208:99:4342,513,0 chrVIII 424109 . G A 7118.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.13;SB=-3.819e+03 GT:AD:DP:GQ:PL 1/1:0,295:295:99:7118,786,0 chrVIII 424149 . T C 6126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=284;Dels=0.00;FS=8.028;HaplotypeScore=11.6924;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.402;QD=21.57;ReadPosRankSum=2.406;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:2,282:284:99:6126,725,0 chrVIII 424239 . C T 4727.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=19.8836;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4727,525,0 chrVIII 424278 . T C 5272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=241;Dels=0.00;FS=4.375;HaplotypeScore=6.9764;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.913;QD=21.88;ReadPosRankSum=1.675;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5272,591,0 chrVIII 424326 . C T 3732.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.3481;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.04;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:3732,426,0 chrVIII 425300 . G T 3144 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=15.56;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:3177,345,0 chrVIII 425301 . C T 3156 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=15.62;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:3189,354,0 chrVIII 425311 . C T 3147 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=16.06;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3180,348,0 chrVIII 426200 . A G 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2103;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.523;QD=20.27;ReadPosRankSum=1.711;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3385,399,0 chrVIII 426350 . G A 3036 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.51;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3069,342,0 chrVIII 426407 . A G 3666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.753;DP=169;Dels=0.00;FS=6.042;HaplotypeScore=12.6398;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.102;QD=21.69;ReadPosRankSum=2.898;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:3,164:169:99:3666,420,0 chrVIII 426595 . C T 2513 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.04;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2546,279,0 chrVIII 426665 . A G 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=11.7528;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.995;QD=19.77;ReadPosRankSum=1.710;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3117,354,0 chrVIII 427277 . A G 2284 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.17;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2317,264,0 chrVIII 427439 . A G 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.720;DP=169;Dels=0.00;FS=9.345;HaplotypeScore=7.2515;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-0.982;QD=18.16;ReadPosRankSum=2.947;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3102,357,0 chrVIII 427451 . T C 2539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-1.357;QD=15.97;ReadPosRankSum=1.710;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:2572,297,0 chrVIII 427467 . T C 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=143;Dels=0.00;FS=2.839;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-1.263;QD=15.99;ReadPosRankSum=2.381;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2320,264,0 chrVIII 427565 . A C 2141 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2174,252,0 chrVIII 427619 . T C 2724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=121;Dels=0.00;FS=6.130;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-0.518;QD=22.51;ReadPosRankSum=2.389;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2757,315,0 chrVIII 427660 . A G 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.153;QD=21.78;ReadPosRankSum=1.709;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3256,372,0 chrVIII 427901 . G A 4273.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.5974;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.87;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4273,468,0 chrVIII 428018 . C T 3207 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.1207;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.27;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3240,369,0 chrVIII 428044 . T C 3402.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.0716;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.81;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3402,407,0 chrVIII 428194 . T C 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.854;QD=20.35;ReadPosRankSum=1.709;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,149:153:99:3146,360,0 chrVIII 428201 . T C 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-1.257;QD=19.66;ReadPosRankSum=1.709;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3041,345,0 chrVIII 428241 . G A 2425 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.56;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2458,276,0 chrVIII 428623 . G A 3821.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2851;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.88;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3821,417,0 chrVIII 428738 . G A 4038.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.48;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4038,438,0 chrVIII 428813 . G A 5254.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5254,588,0 chrVIII 429323 . C T 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=151;Dels=0.00;FS=3.670;HaplotypeScore=8.9915;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.477;QD=21.85;ReadPosRankSum=0.035;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3300,366,0 chrVIII 429526 . C T 2698 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.06;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2731,297,0 chrVIII 430273 . G A 1971 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.95;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2004,222,0 chrVIII 430583 . T C 3515.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.97;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3515,399,0 chrVIII 431162 . C T 4198.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.2811;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.42;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4198,459,0 chrVIII 431204 . C T 4317.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.8873;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=21.06;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4317,471,0 chrVIII 431228 . T C 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=208;Dels=0.00;FS=3.938;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.050;QD=21.15;ReadPosRankSum=1.665;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4400,504,0 chrVIII 431438 . G A 3153 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.46;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3186,351,0 chrVIII 431447 . A G 3344.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.22;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3344,378,0 chrVIII 431645 . G A 5260.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.27;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5260,582,0 chrVIII 431945 . A G 3568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.491;DP=168;Dels=0.00;FS=7.517;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.437;QD=21.24;ReadPosRankSum=3.472;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:5,163:168:99:3568,383,0 chrVIII 432002 . G A 2691 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2724,294,0 chrVIII 432107 . A G 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=112;Dels=0.00;FS=6.802;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.610;QD=23.31;ReadPosRankSum=2.405;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2644,300,0 chrVIII 432212 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=13.2038;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.42;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2968,333,0 chrVIII 432281 . A G 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=169;Dels=0.00;FS=3.594;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.006;QD=22.07;ReadPosRankSum=1.691;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3730,423,0 chrVIII 432335 . A G 3701.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.7237;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.42;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3701,417,0 chrVIII 432386 . T C 3397.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.36;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3397,384,0 chrVIII 432407 . A G 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=3.850;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.619;QD=20.50;ReadPosRankSum=1.690;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3382,390,0 chrVIII 432641 . T C 3930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=3.622;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-1.099;QD=22.33;ReadPosRankSum=1.673;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3930,450,0 chrVIII 432695 . G A 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=180;Dels=0.00;FS=3.696;HaplotypeScore=14.7610;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.973;QD=22.33;ReadPosRankSum=1.674;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4019,447,0 chrVIII 432761 . C A 3988.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.9240;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=23.05;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3988,438,0 chrVIII 432782 . A G 3682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-0.631;QD=21.28;ReadPosRankSum=1.672;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3682,429,0 chrVIII 432803 . T C 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=155;Dels=0.00;FS=9.374;HaplotypeScore=10.4088;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.383;QD=19.60;ReadPosRankSum=2.916;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3071,345,0 chrVIII 433973 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.5923;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.23;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3824,453,0 chrVIII 436457 . A G 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=162;Dels=0.00;FS=3.037;HaplotypeScore=11.3552;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.297;QD=21.49;ReadPosRankSum=2.404;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3482,390,0 chrVIII 436588 . T C 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=3.161;HaplotypeScore=12.0131;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.520;QD=20.28;ReadPosRankSum=1.709;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3055,345,0 chrVIII 436613 . T C 2845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=148;Dels=0.00;FS=3.040;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.822;QD=19.22;ReadPosRankSum=2.416;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2878,324,0 chrVIII 436679 . T C 3696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.573;QD=21.24;ReadPosRankSum=1.672;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3696,426,0 chrVIII 436793 . T C 2889 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2583;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.05;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2922,351,0 chrVIII 437014 . G T 2374 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.03;FS=0.000;HaplotypeScore=36.0972;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.95;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2407,270,0 chrVIII 437680 . G A 4039.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.1526;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.31;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4039,450,0 chrVIII 437704 . G A 3717.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.49;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3717,417,0 chrVIII 437944 . G A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.4594;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.64;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3671,399,0 chrVIII 438040 . A G 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.702;DP=127;Dels=0.00;FS=2.595;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.347;QD=20.87;ReadPosRankSum=2.847;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:3,122:127:99:2684,309,0 chrVIII 438265 . A G 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=102;Dels=0.00;FS=4.603;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.840;QD=21.89;ReadPosRankSum=1.698;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2266,276,0 chrVIII 438307 . G A 2652 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2685,294,0 chrVIII 438475 . C T 3069 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3102,342,0 chrVIII 438697 . G A 3067 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3100,339,0 chrVIII 438769 . C T 4621.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4621,501,0 chrVIII 439062 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.55;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3699,408,0 chrVIII 439450 . T C 2833 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.66;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2866,330,0 chrVIII 439617 . G T 2740 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6998;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.64;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2773,309,0 chrVIII 439647 . G A 2701 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=22.32;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2734,300,0 chrVIII 439686 . A G 2944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=0.593;QD=19.37;ReadPosRankSum=1.709;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2977,339,0 chrVIII 439692 . C T 2948 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=19.52;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2981,333,0 chrVIII 439710 . A G 3025 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=19.39;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3058,345,0 chrVIII 439805 . G T 3045 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.8236;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.72;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3078,336,0 chrVIII 440150 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.11;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3153,348,0 chrVIII 440234 . A G 1564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=83;Dels=0.00;FS=6.185;HaplotypeScore=4.4892;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-1.638;QD=18.84;ReadPosRankSum=2.913;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:3,78:83:99:1597,183,0 chrVIII 440255 . T C 1889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.182;DP=101;Dels=0.00;FS=2.791;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-1.938;QD=18.70;ReadPosRankSum=2.377;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1922,222,0 chrVIII 440297 . C T 3002 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.57;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3035,333,0 chrVIII 440682 . C T 4719.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.7481;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4719,528,0 chrVIII 440931 . C T 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.1128;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.194;QD=22.06;ReadPosRankSum=-1.053;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3331,366,0 chrVIII 441170 . C T 3391.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.2725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3391,381,0 chrVIII 441780 . A G 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=146;Dels=0.00;FS=3.629;HaplotypeScore=8.5719;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-0.666;QD=18.33;ReadPosRankSum=1.659;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:2709,312,0 chrVIII 441789 . A T 2882 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.01;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2915,318,0 chrVIII 441833 . A G 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=135;Dels=0.00;FS=3.014;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.537;QD=18.56;ReadPosRankSum=2.377;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2538,285,0 chrVIII 442009 . T C 2094 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.04;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2127,246,0 chrVIII 442747 . A G 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=220;Dels=0.00;FS=3.004;HaplotypeScore=12.7074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.680;QD=20.79;ReadPosRankSum=2.416;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:2,215:220:99:4574,537,0 chrVIII 443428 . A G 4660.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.3140;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.42;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4660,525,0 chrVIII 443899 . C G 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.078;QD=21.34;ReadPosRankSum=0.381;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3393,386,0 chrVIII 444367 . A G 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.497;QD=23.08;ReadPosRankSum=1.708;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3300,375,0 chrVIII 444691 . G A 5430.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=15.5264;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5430,612,0 chrVIII 444788 . C T 4508.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.2338;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4508,492,0 chrVIII 444841 . T A 5597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=237;Dels=0.00;FS=6.738;HaplotypeScore=16.9802;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.205;QD=23.62;ReadPosRankSum=2.418;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:2,235:237:99:5597,618,0 chrVIII 444931 . T C 5271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.301;DP=262;Dels=0.00;FS=9.476;HaplotypeScore=22.3827;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.998;QD=20.12;ReadPosRankSum=3.214;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:4,257:262:99:5271,629,0 chrVIII 445169 . T C 3983.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.5553;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.50;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3983,456,0 chrVIII 445204 . A G 4451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=199;Dels=0.00;FS=3.123;HaplotypeScore=12.3311;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.506;QD=22.37;ReadPosRankSum=1.661;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:1,194:199:99:4451,513,0 chrVIII 445303 . C T 3871.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.15;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3871,423,0 chrVIII 445451 . T C 3270.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.66;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3270,378,0 chrVIII 445623 . A G 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.4964;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.179;QD=21.66;ReadPosRankSum=1.672;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2545,282,0 chrVIII 445651 . G T 2497 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.53;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2530,282,0 chrVIII 445735 . G A 2571 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=24.72;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2604,282,0 chrVIII 445905 . A C 3087 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.44;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3120,366,0 chrVIII 446336 . T G 4096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.4414;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.614;QD=21.56;ReadPosRankSum=1.695;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4096,485,0 chrVIII 446477 . T C 3029 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.18;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3062,351,0 chrVIII 446482 . T G 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.854;QD=20.49;ReadPosRankSum=1.708;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3024,345,0 chrVIII 447419 . T C 3759.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.73;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3759,423,0 chrVIII 447550 . G A 2945 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.31;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2978,330,0 chrVIII 447743 . G A 39.97 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=97.2264;MLEAC=2;MLEAF=1.00;MQ=37.86;MQ0=0;QD=0.37;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:9:72,9,0 chrVIII 447755 . A G 1574 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;QD=15.43;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1607,186,0 chrVIII 447756 . G T 1654 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.31;MQ0=0;QD=16.71;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1687,186,0 chrVIII 447761 . C T 1677 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.36;MQ0=0;QD=15.67;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1710,186,0 chrVIII 447769 . T C 1545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=104;Dels=0.00;FS=6.407;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.94;MQ0=0;MQRankSum=-2.213;QD=14.86;ReadPosRankSum=2.402;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1578,186,0 chrVIII 447838 . G A 2654 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=20.73;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2687,294,0 chrVIII 447899 . G A 3102 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=22.48;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3135,345,0 chrVIII 447979 . G A 3555.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.6485;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=23.86;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3555,393,0 chrVIII 448145 . A T 4257.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=15.2550;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.18;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4257,474,0 chrVIII 448829 . G A 2794 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=20.85;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2827,318,0 chrVIII 448835 . C T 2760 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=20.60;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2793,306,0 chrVIII 448853 . A G 2642 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=18.48;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2675,309,0 chrVIII 448924 . T G 2633 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.50;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2666,306,0 chrVIII 448955 . A G 2480 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.2926;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.38;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2513,288,0 chrVIII 448997 . G A 2313 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.62;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2346,258,0 chrVIII 449102 . G A 3442.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.58;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3442,384,0 chrVIII 449277 . A G 3711.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.00;FS=8.332;HaplotypeScore=8.1847;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.335;QD=22.77;ReadPosRankSum=2.389;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:3711,446,0 chrVIII 449402 . T G 2996 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.95;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3029,354,0 chrVIII 449424 . C G 2952 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.94;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2985,342,0 chrVIII 449897 . G A 3173 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.88;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3206,351,0 chrVIII 449939 . A G 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=147;Dels=0.00;FS=2.959;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.261;QD=21.31;ReadPosRankSum=2.365;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3165,360,0 chrVIII 449957 . A G 3204.99 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.80;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3238,366,0 chrVIII 450131 . G A 3500.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.33;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3500,390,0 chrVIII 450218 . A C 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=0.802;QD=21.48;ReadPosRankSum=1.569;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3234,372,0 chrVIII 450239 . G A 2743 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=18.17;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2776,306,0 chrVIII 450254 . T C 2423 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=16.71;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:2456,282,0 chrVIII 450359 . G A 3745.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.4152;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3745,411,0 chrVIII 450572 . T C 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.252;DP=145;Dels=0.00;FS=8.622;HaplotypeScore=13.0944;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=2.656;QD=21.54;ReadPosRankSum=3.276;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:4,140:145:99:3157,357,0 chrVIII 450770 . A G 4270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.01;FS=3.874;HaplotypeScore=9.8198;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.009;QD=23.21;ReadPosRankSum=1.694;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4270,492,0 chrVIII 451172 . G A 1969 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.89;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2002,222,0 chrVIII 451932 . C T 6785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.960;DP=318;Dels=0.00;FS=3.539;HaplotypeScore=30.9511;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=1;MQRankSum=1.710;QD=21.34;ReadPosRankSum=-1.721;SB=-3.531e+03 GT:AD:DP:GQ:PL 1/1:2,315:318:99:6785,734,0 chrVIII 452031 . T C 367.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.142;DP=344;Dels=0.00;FS=5.189;HaplotypeScore=27.7070;MLEAC=1;MLEAF=0.500;MQ=48.99;MQ0=14;MQRankSum=-10.007;QD=1.07;ReadPosRankSum=1.146;SB=-1.470e+02 GT:AD:DP:GQ:PL 0/1:273,70:344:99:397,0,5187 chrVIII 452163 . A G 5517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=1.117;QD=22.25;ReadPosRankSum=1.690;SB=-2.984e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:5517,636,0 chrVIII 452436 . T C 4960.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=1;QD=20.67;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:4960,570,0 chrVIII 452808 . A G 3712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=4.914;HaplotypeScore=10.3762;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.643;QD=23.95;ReadPosRankSum=1.710;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3712,417,0 chrVIII 452903 . C T 5050.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=3.7786;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.93;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5050,546,0 chrVIII 452923 . C A 5365.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.33;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5365,585,0 chrVIII 452955 . A G 5280.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=16.3318;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=20.79;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,251:254:99:5280,600,0 chrVIII 453105 . T C 5727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=261;Dels=0.00;FS=4.448;HaplotypeScore=12.9069;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.769;QD=21.94;ReadPosRankSum=1.719;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:1,258:261:99:5727,654,0 chrVIII 453234 . T G 4555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=223;Dels=0.00;FS=3.028;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.387;QD=20.43;ReadPosRankSum=2.405;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:2,217:223:99:4555,542,0 chrVIII 453261 . A G 4428.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=19.95;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4428,507,0 chrVIII 453472 . A G 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.8434;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.673;QD=15.21;ReadPosRankSum=1.713;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:2726,315,0 chrVIII 453526 . A C 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=170;Dels=0.00;FS=5.835;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.204;QD=19.93;ReadPosRankSum=2.910;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:3388,381,0 chrVIII 453557 . A G 3563.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.08;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3563,405,0 chrVIII 453608 . A T 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=136;Dels=0.01;FS=3.042;HaplotypeScore=14.5104;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=0.890;QD=21.44;ReadPosRankSum=2.321;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2949,324,0 chrVIII 453686 . T C 3093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.302;DP=147;Dels=0.01;FS=7.986;HaplotypeScore=16.9338;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;MQRankSum=-1.938;QD=21.04;ReadPosRankSum=3.338;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:4,141:146:99:3126,357,0 chrVIII 453712 . T C 3652.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=22.40;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3652,429,0 chrVIII 453738 . A G 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=164;Dels=0.00;FS=7.131;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-1.048;QD=22.10;ReadPosRankSum=2.389;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3624,408,0 chrVIII 453771 . A G 3320.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=20.24;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3320,396,0 chrVIII 453813 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0924;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=18.48;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2546,279,0 chrVIII 453897 . C T 2044 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.80;MQ0=0;QD=12.17;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2077,228,0 chrVIII 453908 . C T 2187 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.3480;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;QD=12.94;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2220,246,0 chrVIII 454093 . A G 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;MQRankSum=1.139;QD=21.26;ReadPosRankSum=1.708;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,145:149:99:3201,366,0 chrVIII 454213 . C T 3690.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.44;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3690,405,0 chrVIII 454283 . T C 2903 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.33;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2936,333,0 chrVIII 454385 . A G 3408.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.8242;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.00;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3408,384,0 chrVIII 454715 . G A 4181.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4181,462,0 chrVIII 454905 . T C 3047 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.0204;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.46;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3080,366,0 chrVIII 455012 . A G 3320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=147;Dels=0.00;FS=7.340;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.295;QD=22.59;ReadPosRankSum=2.399;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3320,381,0 chrVIII 455050 . A G 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=4.223;HaplotypeScore=8.5989;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.310;QD=24.15;ReadPosRankSum=1.710;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3768,432,0 chrVIII 455215 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.364;DP=167;Dels=0.00;FS=12.527;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-2.749;QD=21.35;ReadPosRankSum=3.396;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:4,161:167:99:3566,411,0 chrVIII 455636 . T A 3562.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.0225;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.54;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3562,399,0 chrVIII 455651 . T C 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.202;DP=151;Dels=0.00;FS=2.000;HaplotypeScore=3.6499;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=1.347;QD=20.89;ReadPosRankSum=3.097;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:4,146:151:99:3188,344,0 chrVIII 455744 . C T 2327 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.5184;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.35;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2360,261,0 chrVIII 455862 . A G 2137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.609;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=22.0065;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-2.475;QD=17.66;ReadPosRankSum=2.492;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2170,246,0 chrVIII 456019 . G C 1733 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=72.1455;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=19.92;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1766,198,0 chrVIII 456328 . G T 2273 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.10;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2306,252,0 chrVIII 456335 . G A 2475 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.62;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2508,273,0 chrVIII 456439 . G A 3137 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.57;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3170,351,0 chrVIII 456499 . C T 4987.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.2639;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.69;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4987,558,0 chrVIII 456866 . C G 2661 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.0958;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=20.79;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2694,306,0 chrVIII 456875 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=20.63;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2694,297,0 chrVIII 456889 . C T 2524 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=18.98;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2557,279,0 chrVIII 456899 . T C 2092 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=17.73;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2125,243,0 chrVIII 456941 . A G 1850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2491;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.717;QD=18.50;ReadPosRankSum=1.697;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:1883,216,0 chrVIII 457019 . G C 2580 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.83;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2613,297,0 chrVIII 457209 . A G 2160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=110;Dels=0.00;FS=3.050;HaplotypeScore=7.0596;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.749;QD=19.64;ReadPosRankSum=2.360;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2193,261,0 chrVIII 457249 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.5999;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.86;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3256,357,0 chrVIII 457364 . A G 4474.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=23.42;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4474,513,0 chrVIII 457544 . T C 4364.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=3.1793;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;MQRankSum=-0.881;QD=14.84;ReadPosRankSum=1.555;SB=-3.300e+03 GT:AD:DP:GQ:PL 1/1:1,292:294:99:4364,498,0 chrVIII 457546 . A G 4284.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.401;DP=290;Dels=0.00;FS=8.686;HaplotypeScore=2.3906;MLEAC=2;MLEAF=1.00;MQ=39.28;MQ0=0;MQRankSum=-2.152;QD=14.77;ReadPosRankSum=3.389;SB=-3.202e+03 GT:AD:DP:GQ:PL 1/1:4,286:290:99:4284,498,0 chrVIII 457553 . G A 4127.01 SnpCluster AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=0;QD=14.33;SB=-3.261e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:4127,462,0 chrVIII 457565 . G A 3599.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=40.20;MQ0=0;QD=12.67;SB=-2.888e+03 GT:AD:DP:GQ:PL 1/1:0,283:284:99:3599,405,0 chrVIII 457580 . C T 3478.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=7.3025;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=12.83;SB=-3.102e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:3478,387,0 chrVIII 457673 . C T 5397.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=19.1721;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.48;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,274:277:99:5397,597,0 chrVIII 457736 . A G 4454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.327;DP=223;Dels=0.00;FS=5.232;HaplotypeScore=13.5897;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;MQRankSum=-0.997;QD=19.97;ReadPosRankSum=3.421;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:4,219:223:99:4454,519,0 chrVIII 457747 . C G 4248.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=19.05;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4248,489,0 chrVIII 457760 . A G 4389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;MQRankSum=-0.647;QD=20.13;ReadPosRankSum=1.700;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:4389,507,0 chrVIII 457837 . C G 3935.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.9862;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=20.49;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3935,464,0 chrVIII 458025 . A G 3463.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=158.3871;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=19.03;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3463,396,0 chrVIII 458041 . C A 3448.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=19.59;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3448,381,0 chrVIII 458084 . T A 2855 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6006;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=18.42;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2888,321,0 chrVIII 458130 . T A 2949 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.86;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2982,327,0 chrVIII 458277 . T C 3485.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=23.23;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3485,411,0 chrVIII 458341 . C G 2872 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.5806;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.23;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2905,350,0 chrVIII 458390 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.63;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3824,435,0 chrVIII 458420 . A G 3847.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.9062;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.49;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3847,441,0 chrVIII 458489 . G T 4448.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.66;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4448,486,0 chrVIII 458616 . T C 4478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=204;Dels=0.00;FS=7.695;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.579;QD=21.95;ReadPosRankSum=2.389;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4478,510,0 chrVIII 458896 . T C 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=160;Dels=0.02;FS=8.113;HaplotypeScore=9.5259;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=0.008;QD=19.89;ReadPosRankSum=2.387;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3215,366,0 chrVIII 458916 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.1274;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.64;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3468,384,0 chrVIII 458966 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.25;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3605,396,0 chrVIII 459010 . C T 2844 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2877,315,0 chrVIII 459529 . G A 4461.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4461,486,0 chrVIII 459589 . G A 4744.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.59;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,206:210:99:4744,534,0 chrVIII 459766 . T C 4949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=232;Dels=0.00;FS=2.833;HaplotypeScore=21.6189;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.616;QD=21.33;ReadPosRankSum=2.428;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:2,227:232:99:4949,570,0 chrVIII 459884 . C T 5538.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=11.1378;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.72;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,253:255:99:5538,600,0 chrVIII 460285 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=178;Dels=0.00;FS=4.511;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.031;QD=18.15;ReadPosRankSum=1.713;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3263,389,0 chrVIII 460411 . T C 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=182;Dels=0.00;FS=6.289;HaplotypeScore=19.3555;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.170;QD=21.99;ReadPosRankSum=2.341;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:4003,453,0 chrVIII 460468 . A T 2984 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.44;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3017,330,0 chrVIII 460606 . T C 4580.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4580,540,0 chrVIII 460708 . C T 4992.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.11;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4992,546,0 chrVIII 460795 . C G 3955.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=21.4426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.87;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,192:199:99:3955,462,0 chrVIII 460867 . A G 4256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.002;QD=23.01;ReadPosRankSum=1.713;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4256,483,0 chrVIII 461035 . T C 4063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.552;QD=22.45;ReadPosRankSum=1.713;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:4063,480,0 chrVIII 461338 . A G 4210.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=19.3929;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4210,474,0 chrVIII 461593 . T A 1840 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.40;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1873,210,0 chrVIII 461709 . C A 1615 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.82;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1648,180,0 chrVIII 461766 . G A 701 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=23.6494;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=14.91;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,44:47:81:734,81,0 chrVIII 461806 . T C 1643 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=22.20;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1676,195,0 chrVIII 461890 . A T 2564 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.0609;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.42;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2597,285,0 chrVIII 462039 . A T 3304.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.02;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3304,360,0 chrVIII 462040 . A T 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=165;Dels=0.00;FS=9.851;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-0.628;QD=20.07;ReadPosRankSum=2.872;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3312,360,0 chrVIII 462051 . C T 3148 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.52;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3181,348,0 chrVIII 462222 . T C 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=164;Dels=0.00;FS=4.269;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.478;QD=21.68;ReadPosRankSum=1.690;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3556,402,0 chrVIII 462297 . T C 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=5.506;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=0.633;QD=19.94;ReadPosRankSum=1.711;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3370,381,0 chrVIII 462322 . C G 3737.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.8624;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.53;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3737,423,0 chrVIII 462419 . C T 2756 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2789,306,0 chrVIII 462588 . A G 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=162;Dels=0.00;FS=3.966;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.668;QD=22.58;ReadPosRankSum=1.689;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3658,420,0 chrVIII 462676 . G T 4480.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4480,495,0 chrVIII 462717 . A G 5450.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=15.9743;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-3.021e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5450,621,0 chrVIII 462825 . T G 4299.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4299,489,0 chrVIII 463078 . A G 5953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=273;Dels=0.00;FS=3.427;HaplotypeScore=14.2285;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.161;QD=21.81;ReadPosRankSum=1.656;SB=-3.108e+03 GT:AD:DP:GQ:PL 1/1:1,272:273:99:5953,698,0 chrVIII 463320 . A G 5424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=251;Dels=0.00;FS=5.963;HaplotypeScore=13.5978;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.420;QD=21.61;ReadPosRankSum=2.972;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:3,248:251:99:5424,621,0 chrVIII 463432 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-1.544;QD=20.79;ReadPosRankSum=1.676;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3826,453,0 chrVIII 463458 . C T 3893.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.25;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3893,423,0 chrVIII 463473 . T A 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=171;Dels=0.00;FS=7.921;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-1.113;QD=21.01;ReadPosRankSum=2.406;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3592,402,0 chrVIII 463665 . G C 2382 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.35;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2415,276,0 chrVIII 463767 . T G 1503 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.59;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1536,171,0 chrVIII 463786 . G A 1513 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.2428;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.93;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1546,171,0 chrVIII 464017 . C T 4092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.924;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=1.713;QD=22.73;ReadPosRankSum=0.520;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4092,429,0 chrVIII 464071 . C T 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.365;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=1.709;QD=20.85;ReadPosRankSum=-0.103;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3181,329,0 chrVIII 464132 . T A 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=136;Dels=0.00;FS=11.008;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=1.274;QD=21.47;ReadPosRankSum=2.948;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2953,327,0 chrVIII 464156 . T C 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=140;Dels=0.00;FS=7.549;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.765;QD=20.06;ReadPosRankSum=2.309;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2841,339,0 chrVIII 464198 . A G 4075.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.56;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4075,485,0 chrVIII 464249 . A T 4395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=182;Dels=0.00;FS=3.033;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.224;QD=24.15;ReadPosRankSum=2.395;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4395,483,0 chrVIII 464288 . C T 3386.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=23.68;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3386,369,0 chrVIII 464377 . A G 3475.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.5866;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;QD=21.86;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3475,413,0 chrVIII 464415 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=21.63;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3331,369,0 chrVIII 464449 . A C 3387.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.14;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3387,375,0 chrVIII 464525 . G A 2426 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=43.3504;MLEAC=2;MLEAF=1.00;MQ=40.44;MQ0=0;QD=20.39;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2459,267,0 chrVIII 464561 . C A 1370 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.7273;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;QD=9.19;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:1403,156,0 chrVIII 464600 . T G 2487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=0.089;QD=18.15;ReadPosRankSum=-1.100;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2520,291,0 chrVIII 464624 . G C 3123 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=21.10;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3156,372,0 chrVIII 464647 . C T 2492 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.32;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2525,279,0 chrVIII 464670 . C T 2610 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=19.77;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2643,291,0 chrVIII 464718 . A G 1810 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=20.80;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1843,210,0 chrVIII 464753 . T C 1538 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=20.78;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1571,189,0 chrVIII 464839 . G C 1404 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=17.33;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1437,159,0 chrVIII 464855 . G A 1703 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=20.04;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1736,195,0 chrVIII 464925 . A T 499 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=9.5136;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=17.82;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:60:532,60,0 chrVIII 465080 . G C 1137 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=22.74;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1170,132,0 chrVIII 465090 . A T 1034 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=21.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1067,117,0 chrVIII 465092 . A G 957 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:50:99:990,114,0 chrVIII 465674 . G A 2441 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=17.56;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2474,276,0 chrVIII 465684 . G A 2413 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=17.87;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2446,270,0 chrVIII 465708 . T A 2741 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=19.03;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2774,303,0 chrVIII 465769 . C T 2100 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;QD=16.41;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2133,243,0 chrVIII 465784 . G A 1667 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=0;QD=14.62;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1700,195,0 chrVIII 465841 . T C 1085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;MQRankSum=-0.700;QD=11.54;ReadPosRankSum=1.622;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1118,129,0 chrVIII 465996 . C T 3702.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=38.79;MQ0=0;QD=23.43;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3702,402,0 chrVIII 466004 . C A 3929.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=39.28;MQ0=0;QD=22.71;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3929,435,0 chrVIII 466143 . A C 3828.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;QD=22.65;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3828,438,0 chrVIII 466181 . C T 2501 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=35.03;MQ0=0;QD=19.24;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2534,282,0 chrVIII 466187 . T C 2122 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.32;MQ0=0;QD=17.39;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2155,266,0 chrVIII 466192 . C T 2222 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.74;MQ0=0;QD=18.99;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2255,249,0 chrVIII 466193 . C T 2094 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.95;MQ0=0;QD=18.21;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2127,243,0 chrVIII 466219 . T G 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;QD=0.11;SB=-2.118e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:6:44,6,0 chrVIII 466324 . A G 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=158;Dels=0.00;FS=6.273;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=42.61;MQ0=0;MQRankSum=-1.330;QD=17.65;ReadPosRankSum=2.418;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:2822,330,0 chrVIII 466334 . A G 2491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.00;FS=6.933;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;MQRankSum=-1.743;QD=17.06;ReadPosRankSum=2.416;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2524,285,0 chrVIII 466339 . C T 2422 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;QD=17.55;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2455,273,0 chrVIII 466361 . A G 1528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=117;Dels=0.00;FS=8.759;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.91;MQ0=0;MQRankSum=-2.050;QD=13.06;ReadPosRankSum=2.408;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:1561,192,0 chrVIII 466372 . T A 1136 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=11.59;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1169,138,0 chrVIII 466379 . G A 948 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=11.56;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:981,120,0 chrVIII 466381 . A C 929 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=83;Dels=0.00;FS=12.945;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.59;MQ0=0;MQRankSum=-0.963;QD=11.19;ReadPosRankSum=2.914;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:3,79:83:99:962,120,0 chrVIII 466403 . T C 835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.03;FS=0.000;HaplotypeScore=13.1207;MLEAC=2;MLEAF=1.00;MQ=32.66;MQ0=0;MQRankSum=-1.732;QD=11.13;ReadPosRankSum=1.685;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:868,105,0 chrVIII 466454 . C T 1362 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;QD=15.13;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1395,153,0 chrVIII 466475 . A G 1392 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=70.9897;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=14.97;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1425,168,0 chrVIII 466485 . A C 1402 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=14.76;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1435,165,0 chrVIII 466598 . G C 2471 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;QD=21.87;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2504,279,0 chrVIII 466650 . C A 2309 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.2707;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=18.93;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2342,261,0 chrVIII 466657 . G A 2063 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=1;QD=19.10;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2096,231,0 chrVIII 466663 . G C 1898 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=1;QD=16.22;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:1931,234,0 chrVIII 466717 . C G 1273 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=1;QD=12.60;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,98:101:99:1306,156,0 chrVIII 466727 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=1;QD=16.14;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1679,189,0 chrVIII 466785 . C T 2557 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.79;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2590,288,0 chrVIII 466818 . G A 2906 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.77;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2939,327,0 chrVIII 466826 . G A 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.208;DP=153;Dels=0.00;FS=3.895;HaplotypeScore=8.2562;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=1.641;QD=19.33;ReadPosRankSum=1.322;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:2991,314,0 chrVIII 466929 . G A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=22.47;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3281,369,0 chrVIII 466953 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=21.69;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3156,348,0 chrVIII 466959 . T C 3026 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=21.31;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3059,348,0 chrVIII 468050 . A G 2159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.840;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.544;QD=23.47;ReadPosRankSum=1.619;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2192,252,0 chrVIII 468183 . C A 2948 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2981,324,0 chrVIII 468239 . C T 2907 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.83;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2940,327,0 chrVIII 468386 . A G 3000 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.90;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3033,348,0 chrVIII 468422 . T C 3185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=144;Dels=0.00;FS=2.957;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.213;QD=22.12;ReadPosRankSum=2.415;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3218,378,0 chrVIII 468473 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.7645;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.89;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3032,339,0 chrVIII 468677 . G A 3066 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=21.44;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3099,342,0 chrVIII 468680 . A T 3039 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=22.18;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3072,336,0 chrVIII 468734 . T G 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.390;QD=17.92;ReadPosRankSum=1.701;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2040,237,0 chrVIII 468936 . T C 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=113;Dels=0.00;FS=3.089;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-0.557;QD=23.10;ReadPosRankSum=1.670;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2643,297,0 chrVIII 468962 . A G 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.706;DP=114;Dels=0.01;FS=10.509;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.027;QD=20.65;ReadPosRankSum=2.938;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2387,282,0 chrVIII 469046 . A G 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=119;Dels=0.00;FS=10.820;HaplotypeScore=7.0468;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.564;QD=22.57;ReadPosRankSum=2.889;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2719,309,0 chrVIII 469211 . C T 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=145;Dels=0.00;FS=3.845;HaplotypeScore=11.8479;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.514;QD=22.79;ReadPosRankSum=-0.521;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3305,352,0 chrVIII 469259 . T C 2986 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.96;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3019,348,0 chrVIII 469286 . T C 2687 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.67;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2720,303,0 chrVIII 469438 . C G 3295.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.88;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3295,378,0 chrVIII 469510 . T A 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.138;QD=23.36;ReadPosRankSum=1.609;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2696,300,0 chrVIII 469573 . A C 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.863;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.497;QD=19.05;ReadPosRankSum=1.678;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2490,288,0 chrVIII 469598 . G A 2755 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=19.54;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2788,309,0 chrVIII 469661 . A G 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.391;QD=22.18;ReadPosRankSum=1.659;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3182,360,0 chrVIII 469751 . T C 2232 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2365;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=21.06;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2265,255,0 chrVIII 469787 . G A 2707 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=21.66;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2740,300,0 chrVIII 469805 . A G 2168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=118;Dels=0.00;FS=2.838;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=0.115;QD=18.37;ReadPosRankSum=2.408;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2201,252,0 chrVIII 469813 . A G 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=119;Dels=0.00;FS=2.838;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=-0.136;QD=16.55;ReadPosRankSum=2.366;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2003,231,0 chrVIII 469995 . T C 2952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.3421;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.929;QD=21.39;ReadPosRankSum=1.707;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2985,345,0 chrVIII 470052 . A G 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=4.009;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=1.542;QD=22.97;ReadPosRankSum=1.708;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3354,384,0 chrVIII 471244 . T C 5086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.824;DP=251;Dels=0.00;FS=19.983;HaplotypeScore=31.7945;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.645;QD=20.26;ReadPosRankSum=4.123;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:6,243:251:99:5086,588,0 chrVIII 471466 . C T 5917.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=16.9473;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.00;SB=-3.432e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5917,660,0 chrVIII 472675 . A C 1382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.247;QD=17.95;ReadPosRankSum=1.372;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1415,165,0 chrVIII 472879 . A G 2882 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.87;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2915,342,0 chrVIII 473100 . T C 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.4443;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.114;QD=23.99;ReadPosRankSum=1.701;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2744,309,0 chrVIII 473884 . A G 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.441;QD=22.79;ReadPosRankSum=1.706;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3041,348,0 chrVIII 474166 . C T 3464.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.6406;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.39;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3464,378,0 chrVIII 474210 . T C 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.379;QD=22.89;ReadPosRankSum=1.705;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2986,339,0 chrVIII 474258 . G A 3514.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3514,381,0 chrVIII 474449 . C G 2130 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.73;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2163,246,0 chrVIII 474485 . C G 1664 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.80;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1697,198,0 chrVIII 474521 . T A 1271 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1304,141,0 chrVIII 474566 . C T 765 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.18;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:87:798,87,0 chrVIII 474597 . C T 810 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.89;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:93:843,93,0 chrVIII 474649 . T C 883 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.20;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:916,102,0 chrVIII 475142 . G A 2431 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.78;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2464,267,0 chrVIII 475170 . C T 2964 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.73;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2997,324,0 chrVIII 475380 . C T 2871 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.08;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2904,315,0 chrVIII 475617 . A C 1713 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.4612;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=15.43;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,106:111:99:1746,201,0 chrVIII 475984 . A G 286 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=9.23;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,30:31:36:319,36,0 chrVIII 475986 . G A 303 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=9.47;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,31:32:36:336,36,0 chrVIII 476842 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.27;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3365,372,0 chrVIII 476872 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.79;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4034,438,0 chrVIII 476968 . A C 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.7395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.569;QD=20.86;ReadPosRankSum=1.707;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2953,345,0 chrVIII 477096 . A G 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.306;QD=22.85;ReadPosRankSum=1.703;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2752,315,0 chrVIII 477127 . A T 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.170;QD=22.95;ReadPosRankSum=1.670;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2581,282,0 chrVIII 477370 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2771,306,0 chrVIII 477509 . A G 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.386;DP=124;Dels=0.00;FS=8.953;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.577;QD=20.60;ReadPosRankSum=3.287;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:4,120:124:99:2588,294,0 chrVIII 477510 . A G 2581 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=21.51;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2614,294,0 chrVIII 477792 . C T 2295 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=21.65;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2328,255,0 chrVIII 477793 . C A 2233 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=21.07;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2266,252,0 chrVIII 477824 . C T 1792 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.13;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1825,201,0 chrVIII 477970 . G A 3768.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.79;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3768,417,0 chrVIII 478429 . A T 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-1.097;QD=23.09;ReadPosRankSum=1.706;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3058,330,0 chrVIII 478458 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.24;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2769,303,0 chrVIII 478552 . A G 2879 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.2359;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.32;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2912,342,0 chrVIII 478714 . C T 3174 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.17;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3207,351,0 chrVIII 478873 . C T 2632 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.93;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2665,294,0 chrVIII 478875 . G A 2632 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.50;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2665,288,0 chrVIII 478978 . C T 2460 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.16;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2493,282,0 chrVIII 479113 . T C 3204 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.72;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3237,369,0 chrVIII 479173 . A G 2806 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.98;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2839,318,0 chrVIII 479278 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.21;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3331,378,0 chrVIII 479389 . G A 2638 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.80;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2671,297,0 chrVIII 480127 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.378;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.638;QD=22.51;ReadPosRankSum=1.709;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3331,387,0 chrVIII 480214 . T C 3851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.0117;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.619;QD=22.92;ReadPosRankSum=1.711;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3851,447,0 chrVIII 480301 . T G 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.659;QD=21.84;ReadPosRankSum=0.445;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3800,435,0 chrVIII 480415 . G A 3343.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3343,369,0 chrVIII 480863 . A G 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=4.280;HaplotypeScore=14.8505;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.391;QD=20.97;ReadPosRankSum=1.708;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3032,368,0 chrVIII 481169 . C T 5578.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=7.4858;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.58;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:5578,615,0 chrVIII 481190 . G T 5488.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.96;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5488,609,0 chrVIII 481335 . T C 5790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=262;Dels=0.00;FS=3.021;HaplotypeScore=10.8490;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=-0.137;QD=22.10;ReadPosRankSum=2.431;SB=-3.166e+03 GT:AD:DP:GQ:PL 1/1:2,258:262:99:5790,672,0 chrVIII 481403 . C T 4406.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.49;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4406,483,0 chrVIII 481404 . A G 4155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=0.064;QD=19.15;ReadPosRankSum=1.668;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:4155,480,0 chrVIII 481457 . T C 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=182;Dels=0.00;FS=4.472;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=1.313;QD=19.06;ReadPosRankSum=1.637;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3469,399,0 chrVIII 481494 . G C 4392.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.29;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4392,504,0 chrVIII 481553 . A G 3992.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.06;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3992,456,0 chrVIII 481687 . C T 2833 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=19.54;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2866,318,0 chrVIII 481690 . C A 2801 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=19.18;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2834,309,0 chrVIII 481693 . C T 2850 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=19.39;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2883,315,0 chrVIII 481787 . G A 4281.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.1922;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.27;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4281,465,0 chrVIII 481932 . G A 4606.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.26;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4606,513,0 chrVIII 481975 . A G 4954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.649;QD=23.26;ReadPosRankSum=1.699;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:4954,564,0 chrVIII 482117 . C T 4214.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.1761;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.81;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4214,459,0 chrVIII 482275 . T G 3715.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.2813;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.79;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3715,423,0 chrVIII 482326 . T C 3644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=171;Dels=0.00;FS=3.854;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.732;QD=21.31;ReadPosRankSum=1.712;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3644,429,0 chrVIII 482614 . A G 3916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=173;Dels=0.00;FS=4.120;HaplotypeScore=9.4651;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.410;QD=22.64;ReadPosRankSum=1.712;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3916,467,0 chrVIII 482671 . G A 4662.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.19;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4662,525,0 chrVIII 482776 . A G 5634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.017;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=16.1762;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.245;QD=22.63;ReadPosRankSum=-0.372;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:1,246:249:99:5634,620,0 chrVIII 482818 . G A 6334.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=12.6132;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.55;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:6334,682,0 chrVIII 483130 . A G 5628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.237;DP=266;Dels=0.00;FS=7.968;HaplotypeScore=17.4445;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.128;QD=21.16;ReadPosRankSum=3.428;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:4,261:266:99:5628,639,0 chrVIII 483295 . A G 3420.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.4772;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.00;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3420,384,0 chrVIII 483396 . A C 3152 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.47;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3185,363,0 chrVIII 483435 . T C 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.000;QD=21.85;ReadPosRankSum=1.669;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3584,417,0 chrVIII 483472 . A G 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=147;Dels=0.00;FS=4.071;HaplotypeScore=15.9235;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.254;QD=18.82;ReadPosRankSum=1.708;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,143:147:99:2799,338,0 chrVIII 483796 . T C 6161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=20.5447;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.675;QD=20.33;ReadPosRankSum=1.456;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:1,300:303:99:6161,705,0 chrVIII 484007 . G A 4956.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.93;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4956,552,0 chrVIII 484023 . G C 4924.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=18.6807;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=19.62;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,245:251:99:4924,578,0 chrVIII 484057 . C T 5797.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=17.1119;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.63;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:5797,642,0 chrVIII 484090 . T C 5436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=10.6667;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.621;QD=20.44;ReadPosRankSum=1.693;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,265:266:99:5436,624,0 chrVIII 484159 . T C 5314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=241;Dels=0.00;FS=2.998;HaplotypeScore=20.1010;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.803;QD=22.05;ReadPosRankSum=2.409;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:2,238:241:99:5314,612,0 chrVIII 484261 . A G 7784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=348;Dels=0.00;FS=0.000;HaplotypeScore=28.2092;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=1.433;QD=22.37;ReadPosRankSum=1.692;SB=-3.856e+03 GT:AD:DP:GQ:PL 1/1:1,346:348:99:7784,891,0 chrVIII 484312 . A T 5800.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=25.6001;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.79;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:0,279:279:99:5800,657,0 chrVIII 484477 . T C 6002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.680;DP=274;Dels=0.00;FS=11.705;HaplotypeScore=23.9166;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.605;QD=21.91;ReadPosRankSum=3.756;SB=-2.998e+03 GT:AD:DP:GQ:PL 1/1:5,262:274:99:6002,687,0 chrVIII 485324 . A G 4730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=214;Dels=0.00;FS=10.597;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.307;QD=22.10;ReadPosRankSum=2.948;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:3,210:214:99:4730,543,0 chrVIII 485522 . T C 6104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=23.2142;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.187;QD=22.61;ReadPosRankSum=1.680;SB=-3.010e+03 GT:AD:DP:GQ:PL 1/1:1,266:270:99:6104,693,0 chrVIII 485700 . G A 4671.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.6318;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.14;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4671,519,0 chrVIII 485969 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=20.42;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3451,372,0 chrVIII 485972 . T C 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-1.396;QD=18.25;ReadPosRankSum=1.669;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3062,351,0 chrVIII 486077 . T C 3888.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3888,438,0 chrVIII 486368 . C T 7439.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=18.9586;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.10;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,321:322:99:7439,822,0 chrVIII 487008 . A T 4486.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4486,507,0 chrVIII 487338 . A G 4382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=197;Dels=0.00;FS=8.648;HaplotypeScore=15.0885;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.665;QD=22.24;ReadPosRankSum=2.412;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:2,192:197:99:4382,498,0 chrVIII 487427 . G A 5031.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.7889;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.19;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5031,552,0 chrVIII 487548 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.00;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3344,363,0 chrVIII 487644 . G A 3694.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.2628;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.52;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3694,405,0 chrVIII 487877 . T G 4698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=221;Dels=0.00;FS=5.735;HaplotypeScore=11.3075;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.682;QD=21.26;ReadPosRankSum=1.293;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:4698,566,0 chrVIII 488330 . T C 1823 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.87;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1856,207,0 chrVIII 488425 . C A 2092 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=101.9363;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=18.35;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2125,237,0 chrVIII 488455 . A G 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=3.424;HaplotypeScore=8.7573;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.647;QD=18.15;ReadPosRankSum=1.627;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1830,210,0 chrVIII 488588 . G A 2638 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.80;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2671,303,0 chrVIII 489103 . C T 4675.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.9928;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.14;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4675,516,0 chrVIII 489580 . T C 5250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.0624;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.486;QD=21.97;ReadPosRankSum=1.689;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:5250,620,0 chrVIII 489755 . C T 5687.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.30;SB=-3.095e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:5687,624,0 chrVIII 489898 . G A 4482.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=16.6011;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.28;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4482,495,0 chrVIII 490087 . C G 4018.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.60;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4018,465,0 chrVIII 490111 . G A 4550.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.64;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4550,498,0 chrVIII 490819 . A G 2752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=128;Dels=0.00;FS=3.522;HaplotypeScore=11.2244;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.220;QD=21.50;ReadPosRankSum=1.705;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2785,315,0 chrVIII 490863 . C T 3417.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.41;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3417,378,0 chrVIII 490976 . G A 4719.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.48;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4719,522,0 chrVIII 491043 . A G 4357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=206;Dels=0.00;FS=4.231;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.815;QD=21.15;ReadPosRankSum=1.698;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:1,203:206:99:4357,498,0 chrVIII 491097 . G A 5654.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=11.0190;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.36;SB=-2.853e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5654,621,0 chrVIII 491125 . T A 4657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=245;Dels=0.00;FS=3.002;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-1.187;QD=19.01;ReadPosRankSum=2.389;SB=-3.070e+03 GT:AD:DP:GQ:PL 1/1:2,243:245:99:4657,525,0 chrVIII 491126 . G T 4866.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=20.11;SB=-3.022e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:4866,528,0 chrVIII 491154 . G A 4814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=248;Dels=0.00;FS=3.046;HaplotypeScore=10.9530;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-1.619;QD=19.41;ReadPosRankSum=1.633;SB=-3.303e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:4814,522,0 chrVIII 491229 . A G 5442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.362;QD=23.16;ReadPosRankSum=1.673;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:5442,615,0 chrVIII 491290 . A G 5310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.980;DP=249;Dels=0.00;FS=6.026;HaplotypeScore=17.2939;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.593;QD=21.33;ReadPosRankSum=2.657;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:3,246:249:99:5310,607,0 chrVIII 491435 . G A 4685.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.5245;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.08;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4685,525,0 chrVIII 491577 . C A 5159.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=12.4094;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.68;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5159,576,0 chrVIII 492224 . T C 2595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=121;Dels=0.00;FS=14.626;HaplotypeScore=10.6439;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.645;QD=21.45;ReadPosRankSum=3.371;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:4,117:121:99:2628,312,0 chrVIII 492468 . T C 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=139;Dels=0.00;FS=2.991;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.398;QD=22.51;ReadPosRankSum=2.379;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3162,360,0 chrVIII 492650 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2967,327,0 chrVIII 492713 . T C 3064 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3097,351,0 chrVIII 492827 . T C 2559 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.98;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2592,297,0 chrVIII 493139 . G A 2998 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3031,336,0 chrVIII 493310 . G A 3004 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.93;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3037,339,0 chrVIII 493601 . T C 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=5.916;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.626;QD=21.40;ReadPosRankSum=1.711;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:1,163:167:99:3574,423,0 chrVIII 493855 . G C 1550 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.14;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1583,177,0 chrVIII 493856 . G A 1599 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.04;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1632,183,0 chrVIII 493985 . A G 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=4.890;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-1.420;QD=22.34;ReadPosRankSum=1.701;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2557,294,0 chrVIII 494024 . C T 3039 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.93;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3072,342,0 chrVIII 494116 . C T 3466.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.80;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3466,375,0 chrVIII 494183 . A G 2542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=132;Dels=0.00;FS=3.042;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-1.267;QD=19.26;ReadPosRankSum=2.412;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2575,291,0 chrVIII 494213 . G A 2726 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=18.05;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2759,306,0 chrVIII 494225 . A G 2898 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=17.78;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:2931,351,0 chrVIII 494255 . T G 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.697;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.4536;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.715;QD=18.98;ReadPosRankSum=1.713;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3492,375,0 chrVIII 494336 . G A 5138.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.5645;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.79;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5138,564,0 chrVIII 494426 . A G 3639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=166;Dels=0.00;FS=7.610;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.707;QD=21.92;ReadPosRankSum=2.330;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3639,429,0 chrVIII 494510 . G A 4875.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.38;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4875,537,0 chrVIII 494516 . G A 4737.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.83;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4737,522,0 chrVIII 494552 . G T 4169.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.54;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4169,465,0 chrVIII 494980 . A G 2564 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.51;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2597,303,0 chrVIII 495151 . A G 3307.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.96;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3307,378,0 chrVIII 495494 . A G 2141 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2174,258,0 chrVIII 495688 . T C 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=171;Dels=0.00;FS=2.505;HaplotypeScore=10.6096;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.533;QD=22.80;ReadPosRankSum=2.876;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:3,167:171:99:3898,447,0 chrVIII 495719 . T C 4200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.374;QD=22.46;ReadPosRankSum=2.396;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:4200,471,0 chrVIII 495979 . G A 4121.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.28;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4121,450,0 chrVIII 496531 . G A 3401.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.3877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3401,381,0 chrVIII 496663 . C T 2821 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.04;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2854,309,0 chrVIII 496779 . T C 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=145;Dels=0.00;FS=3.889;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.391;QD=22.13;ReadPosRankSum=1.659;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,141:145:99:3242,363,0 chrVIII 497055 . G C 4658.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.83;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4658,528,0 chrVIII 497380 . A G 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=3.040;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.337;QD=22.22;ReadPosRankSum=1.686;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3311,381,0 chrVIII 497448 . G C 3776.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.34;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3776,435,0 chrVIII 497886 . T C 4696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=221;Dels=0.00;FS=9.769;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-1.124;QD=21.25;ReadPosRankSum=2.950;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:3,216:221:99:4696,540,0 chrVIII 497907 . A G 4542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.380;DP=218;Dels=0.00;FS=9.150;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=-0.348;QD=20.83;ReadPosRankSum=3.388;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:4,214:218:99:4542,519,0 chrVIII 497936 . C T 4231.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.1918;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.95;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4231,474,0 chrVIII 498021 . T C 4574.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.27;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4574,528,0 chrVIII 498050 . C T 5194.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.29;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5194,573,0 chrVIII 498433 . A G 5961.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=18.5255;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.58;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:5961,684,0 chrVIII 498868 . A T 3706.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.9606;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=19.40;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3706,414,0 chrVIII 498880 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=18.47;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3528,396,0 chrVIII 499040 . A G 3896.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.6435;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.52;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3896,435,0 chrVIII 499194 . C G 6860.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,284:291:99:6860,768,0 chrVIII 499459 . A G 5825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.631;DP=272;Dels=0.00;FS=7.859;HaplotypeScore=21.0080;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.383;QD=21.42;ReadPosRankSum=3.793;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:5,266:272:99:5825,657,0 chrVIII 499853 . T C 6008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=261;Dels=0.00;FS=3.863;HaplotypeScore=20.2944;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.490;QD=23.02;ReadPosRankSum=1.678;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:1,257:261:99:6008,672,0 chrVIII 500154 . A G 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.9974;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.697;QD=20.26;ReadPosRankSum=1.713;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:3768,444,0 chrVIII 500211 . A G 3484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=199;Dels=0.00;FS=2.518;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-0.457;QD=17.51;ReadPosRankSum=2.904;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:3,195:199:99:3484,387,0 chrVIII 500223 . T C 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=201;Dels=0.00;FS=5.207;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=0.966;QD=17.24;ReadPosRankSum=1.628;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:3465,393,0 chrVIII 500294 . G A 3818.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.09;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3818,423,0 chrVIII 500352 . C T 4311.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.9602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4311,474,0 chrVIII 500412 . A G 3815.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.44;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3815,438,0 chrVIII 500464 . C T 4389.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.17;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4389,474,0 chrVIII 500553 . C T 3752.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.94;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3752,411,0 chrVIII 500649 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.06;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3511,402,0 chrVIII 500784 . T C 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=134;Dels=0.00;FS=3.076;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.491;QD=20.93;ReadPosRankSum=1.706;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2837,324,0 chrVIII 500907 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3276,372,0 chrVIII 501036 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.331;DP=148;Dels=0.00;FS=3.285;HaplotypeScore=9.0827;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.130;QD=22.97;ReadPosRankSum=-1.214;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3399,369,0 chrVIII 501168 . A C 3032 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.81;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3065,345,0 chrVIII 501216 . C T 3160 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.94;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3193,348,0 chrVIII 501245 . A G 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.491;QD=22.20;ReadPosRankSum=1.706;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3030,339,0 chrVIII 501271 . A T 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-1.039;QD=23.17;ReadPosRankSum=1.702;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2697,300,0 chrVIII 501299 . G A 2470 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=20.08;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2503,279,0 chrVIII 501339 . A T 2521 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.36;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2554,282,0 chrVIII 501446 . T C 2928 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.1111;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=22.70;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2961,333,0 chrVIII 501458 . C T 2826 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.0783;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.79;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2859,315,0 chrVIII 501641 . A G 2833 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7316;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.79;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2866,327,0 chrVIII 501700 . T C 2885 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.21;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2918,345,0 chrVIII 501703 . T C 2710 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.9265;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.22;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2743,324,0 chrVIII 501908 . T G 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=145;Dels=0.00;FS=2.966;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.602;QD=20.66;ReadPosRankSum=2.382;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3029,348,0 chrVIII 501912 . A G 3192 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.73;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,150:154:99:3225,357,0 chrVIII 501957 . A G 3098 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.13;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3131,351,0 chrVIII 502009 . C A 2753 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.13;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2786,309,0 chrVIII 502167 . A G 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.455;QD=21.30;ReadPosRankSum=1.708;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3057,360,0 chrVIII 502202 . G T 2859 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.99;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2892,318,0 chrVIII 502227 . A T 2845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=127;Dels=0.00;FS=7.156;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.358;QD=22.40;ReadPosRankSum=2.392;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2878,315,0 chrVIII 502365 . A T 2772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=136;Dels=0.00;FS=4.028;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.267;QD=20.38;ReadPosRankSum=1.680;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2805,309,0 chrVIII 502447 . G A 3606.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.8957;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.26;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3606,390,0 chrVIII 502641 . G A 3041 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.27;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3074,351,0 chrVIII 502930 . C T 3012 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=21.67;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3045,339,0 chrVIII 502936 . T G 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.757;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=0.378;QD=20.87;ReadPosRankSum=1.680;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2829,333,0 chrVIII 503038 . A G 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=3.182;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.255;QD=22.77;ReadPosRankSum=1.678;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2970,333,0 chrVIII 503308 . T A 3768.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3768,417,0 chrVIII 503518 . C T 3078 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.52;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3111,339,0 chrVIII 503996 . G A 4416.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.13;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4416,480,0 chrVIII 504773 . A G 71.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=106;Dels=0.00;FS=3.468;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=9.93;MQ0=85;MQRankSum=-0.347;QD=0.67;ReadPosRankSum=1.387;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,104:106:12:104,12,0 chrVIII 504776 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.478;DP=111;Dels=0.00;FS=19.320;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=10.48;MQ0=88;MQRankSum=-0.940;QD=0.16;ReadPosRankSum=2.732;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,104:111:6:49,6,0 chrVIII 505036 . C T 6103.01 filter AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=28;QD=20.28;SB=-3.341e+03 GT:AD:DP:GQ:PL 1/1:0,301:301:99:6103,663,0 chrVIII 505427 . T G 1506 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=13.94;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1539,177,0 chrVIII 505776 . G T 4112.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.36;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4112,462,0 chrVIII 505962 . C T 5017.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.35;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5017,567,0 chrVIII 506002 . A C 4807.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.9004;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.22;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4807,552,0 chrVIII 506159 . T C 4030.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.14;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4030,459,0 chrVIII 506267 . T C 4521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.7766;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-1.667;QD=20.74;ReadPosRankSum=1.716;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:1,211:218:99:4521,519,0 chrVIII 506279 . T A 4808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-1.165;QD=21.76;ReadPosRankSum=1.716;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:4808,516,0 chrVIII 506643 . A G 4354.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8501;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4354,480,0 chrVIII 506933 . A T 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.7112;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.339;QD=22.20;ReadPosRankSum=1.714;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4241,465,0 chrVIII 507449 . T C 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.914;QD=22.56;ReadPosRankSum=1.705;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2943,330,0 chrVIII 507863 . A G 3647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=182;Dels=0.00;FS=3.108;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=1.001;QD=20.04;ReadPosRankSum=1.713;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3647,417,0 chrVIII 507871 . A T 3958.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=21.39;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3958,429,0 chrVIII 508421 . C T 4630.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4630,504,0 chrVIII 508646 . G A 3461.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.48;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3461,375,0 chrVIII 508754 . C T 2994 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6659;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;QD=20.94;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,137:143:99:3027,330,0 chrVIII 509478 . A G 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=3.480;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.155;QD=22.90;ReadPosRankSum=1.643;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3618,402,0 chrVIII 509534 . G A 3962.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.2454;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3962,441,0 chrVIII 509872 . A T 4784.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4784,531,0 chrVIII 510388 . A G 4078.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.81;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4078,471,0 chrVIII 510895 . G A 4896.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=23.65;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4896,546,0 chrVIII 511459 . G C 3296.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.6610;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.22;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3296,381,0 chrVIII 511546 . C A 3755.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.38;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:3755,417,0 chrVIII 511654 . T C 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.3222;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.102;QD=22.98;ReadPosRankSum=1.691;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3907,444,0 chrVIII 511880 . C T 1107 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.05;FS=0.000;HaplotypeScore=10.9094;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=13.02;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1140,123,0 chrVIII 512121 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.30;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2129,237,0 chrVIII 512177 . T C 1907 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.07;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1940,219,0 chrVIII 512225 . A G 406.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;DP=108;Dels=0.00;FS=0.854;HaplotypeScore=174.2589;MLEAC=1;MLEAF=0.500;MQ=36.21;MQ0=1;MQRankSum=-2.639;QD=3.76;ReadPosRankSum=-0.107;SB=-7.250e+02 GT:AD:DP:GQ:PL 0/1:25,83:108:99:436,0,105 chrVIII 512244 . A G 1118 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=33.35;MQ0=1;QD=9.64;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1151,138,0 chrVIII 512249 . T C 1140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.537;DP=127;Dels=0.00;FS=2.735;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=34.92;MQ0=1;MQRankSum=-0.185;QD=8.98;ReadPosRankSum=2.391;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:1173,135,0 chrVIII 512261 . T A 1459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=135;Dels=0.00;FS=2.748;HaplotypeScore=9.3638;MLEAC=2;MLEAF=1.00;MQ=40.07;MQ0=1;MQRankSum=-1.747;QD=10.81;ReadPosRankSum=2.376;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:1492,165,0 chrVIII 512675 . T C 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.107;DP=131;Dels=0.00;FS=2.020;HaplotypeScore=13.5626;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.600;QD=21.75;ReadPosRankSum=2.865;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:4,126:131:99:2882,327,0 chrVIII 512746 . C T 3305.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.11;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3305,369,0 chrVIII 513025 . T C 3855.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=18.99;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:3855,459,0 chrVIII 513034 . T C 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.913;QD=18.25;ReadPosRankSum=1.715;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:3741,444,0 chrVIII 513526 . A G 3865.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3865,441,0 chrVIII 513634 . C T 4401.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=4.8711;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.73;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4401,495,0 chrVIII 513641 . G A 4308.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=19.58;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4308,468,0 chrVIII 513852 . G C 7089.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=16.5213;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.02;SB=-4.036e+03 GT:AD:DP:GQ:PL 1/1:0,319:322:99:7089,810,0 chrVIII 514453 . G A 5897.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=13.2849;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.17;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:5897,642,0 chrVIII 514601 . A T 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.7528;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.521;QD=16.89;ReadPosRankSum=2.415;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2532,282,0 chrVIII 515139 . A G 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.752;DP=166;Dels=0.00;FS=10.805;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-1.043;QD=21.10;ReadPosRankSum=2.921;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3503,402,0 chrVIII 515162 . G A 3604.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.6141;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.39;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:3604,396,0 chrVIII 515681 . T C 2594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=130;Dels=0.00;FS=9.445;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.695;QD=19.95;ReadPosRankSum=2.946;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:3,126:130:99:2627,306,0 chrVIII 515936 . A G 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=3.291;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.299;QD=23.35;ReadPosRankSum=1.710;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3759,423,0 chrVIII 516015 . T G 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.048;DP=146;Dels=0.00;FS=3.875;HaplotypeScore=5.3108;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.241;QD=22.42;ReadPosRankSum=1.107;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3273,372,0 chrVIII 516468 . T C 3345.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.86;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3345,375,0 chrVIII 516642 . A G 1815 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.11;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1848,213,0 chrVIII 516749 . G A 2665 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.38;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2698,297,0 chrVIII 516779 . G A 2167 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=23.05;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2200,240,0 chrVIII 516805 . T C 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=0.419;QD=17.95;ReadPosRankSum=1.696;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,94:97:99:1774,201,0 chrVIII 516811 . G A 1744 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=17.10;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1777,195,0 chrVIII 516980 . C T 2677 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.13;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2710,309,0 chrVIII 517036 . T C 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=16.3516;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=1.220;QD=19.13;ReadPosRankSum=1.653;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3367,393,0 chrVIII 517079 . A G 4710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=220;Dels=0.00;FS=3.030;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.681;QD=21.41;ReadPosRankSum=2.382;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:2,216:220:99:4710,534,0 chrVIII 517336 . C T 2813 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2898;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.53;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2846,312,0 chrVIII 517419 . G A 1414 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.03;FS=0.000;HaplotypeScore=7.4334;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=11.31;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:1447,159,0 chrVIII 517420 . C T 1281 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.4334;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=10.09;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,122:127:99:1314,150,0 chrVIII 518053 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.8356;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.27;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,171:175:99:3547,405,0 chrVIII 518179 . C T 4587.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.71;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4587,510,0 chrVIII 518458 . G A 4306.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.66;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4306,477,0 chrVIII 518911 . T C 2367 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=24.15;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2400,273,0 chrVIII 518945 . A G 2551 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=24.07;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2584,297,0 chrVIII 519006 . G A 2458 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=22.35;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2491,273,0 chrVIII 519013 . G A 2135 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=18.89;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2168,243,0 chrVIII 519057 . A G 2360 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=17.61;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2393,276,0 chrVIII 519078 . G A 2685 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9462;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=18.91;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2718,306,0 chrVIII 519115 . A G 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=3.590;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;MQRankSum=-0.374;QD=18.15;ReadPosRankSum=1.653;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3228,366,0 chrVIII 519116 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=3.565;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;MQRankSum=-0.703;QD=18.93;ReadPosRankSum=1.692;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3331,366,0 chrVIII 519230 . T C 3868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=177;Dels=0.00;FS=2.658;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-1.492;QD=21.85;ReadPosRankSum=2.352;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3868,438,0 chrVIII 519269 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=3.222;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;MQRankSum=0.268;QD=19.50;ReadPosRankSum=1.691;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3276,372,0 chrVIII 519274 . G A 3350.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=19.94;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3350,363,0 chrVIII 519381 . C G 4859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.8000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.150;QD=21.89;ReadPosRankSum=-0.106;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:2,219:222:99:4859,575,0 chrVIII 519408 . C A 5127.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.3453;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.41;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5127,561,0 chrVIII 520045 . T A 2619 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.62;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2652,291,0 chrVIII 520048 . C T 2541 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.33;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2574,285,0 chrVIII 520123 . C G 2376 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.66;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2409,273,0 chrVIII 520252 . G A 1562 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=22.31;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1595,177,0 chrVIII 520279 . A G 1620 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.14;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1653,192,0 chrVIII 520374 . C T 1206 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.33;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1239,138,0 chrVIII 520400 . G A 1391 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.44;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1424,153,0 chrVIII 520416 . G A 1426 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.67;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1459,156,0 chrVIII 520766 . A C 5789.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=17.1472;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.88;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,249:253:99:5789,666,0 chrVIII 521017 . C A 4235.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.50;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4235,465,0 chrVIII 521047 . G A 4375.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.55;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4375,483,0 chrVIII 521132 . C T 3805.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=20.91;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3805,426,0 chrVIII 521150 . G A 3787.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=20.92;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3787,411,0 chrVIII 521352 . C T 150.06 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=507.7494;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=0.54;SB=-2.998e+03 GT:AD:DP:GQ:PL 1/1:0,279:279:21:183,21,0 chrVIII 521408 . T C 5606.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=14.5297;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.09;SB=-3.002e+03 GT:AD:DP:GQ:PL 1/1:0,278:279:99:5606,642,0 chrVIII 521595 . T C 6656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=289;Dels=0.00;FS=13.101;HaplotypeScore=18.8945;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.404;QD=23.03;ReadPosRankSum=2.976;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:3,285:289:99:6656,747,0 chrVIII 521811 . T C 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=4.645;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.646;QD=22.53;ReadPosRankSum=1.650;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,168:174:99:3943,453,0 chrVIII 521866 . C T 4066.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.3114;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.10;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4066,450,0 chrVIII 521987 . T G 2846 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=23.92;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2879,324,0 chrVIII 521988 . T A 2959 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=24.66;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2992,324,0 chrVIII 522136 . G A 3868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=182;Dels=0.00;FS=3.307;HaplotypeScore=11.9165;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-1.199;QD=21.25;ReadPosRankSum=-0.609;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3868,412,0 chrVIII 522216 . C T 2677 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=23.90;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2710,294,0 chrVIII 522224 . T A 2502 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=23.83;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2535,279,0 chrVIII 522257 . G C 1964 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=21.58;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1997,225,0 chrVIII 522278 . T G 1959 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=20.20;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1992,231,0 chrVIII 522291 . T C 2059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=7.741;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.599;QD=19.24;ReadPosRankSum=1.667;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2092,243,0 chrVIII 522339 . T C 2470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=134;Dels=0.00;FS=6.088;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=0.533;QD=18.43;ReadPosRankSum=1.679;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:1,129:134:99:2503,279,0 chrVIII 522369 . C T 2777 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=20.88;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2810,312,0 chrVIII 522395 . G A 2221 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=21.56;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2254,249,0 chrVIII 525628 . T C 46.04 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.72;MQ0=0;QD=1.92;SB=9.92 GT:AD:DP:GQ:PL 1/1:0,3:24:9:78,9,0 chrVIII 525644 . A C 86.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404;DP=52;Dels=0.00;FS=62.803;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=23.79;MQ0=3;MQRankSum=-1.800;QD=1.65;ReadPosRankSum=-1.040;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:8,44:52:85:116,0,85 chrVIII 525649 . C T 307 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.48;MQ0=4;QD=4.72;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:39:340,39,0 chrVIII 525657 . G C 140.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;DP=67;Dels=0.00;FS=93.459;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.28;MQ0=8;MQRankSum=0.277;QD=2.09;ReadPosRankSum=-0.476;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:16,51:67:99:170,0,139 chrVIII 525658 . T A 148.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.893;DP=68;Dels=0.00;FS=93.459;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=24.17;MQ0=8;MQRankSum=-1.694;QD=2.18;ReadPosRankSum=-0.476;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:16,51:68:99:178,0,147 chrVIII 525659 . T A 156.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;DP=69;Dels=0.00;FS=92.391;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=24.24;MQ0=8;MQRankSum=-0.302;QD=2.26;ReadPosRankSum=0.614;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:18,51:69:99:186,0,124 chrVIII 525661 . A C 139.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.493;DP=70;Dels=0.00;FS=110.315;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=24.45;MQ0=8;MQRankSum=0.124;QD=1.99;ReadPosRankSum=0.278;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:18,52:70:99:169,0,168 chrVIII 525667 . C G 170.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.609;DP=94;Dels=0.00;FS=123.860;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=24.90;MQ0=11;MQRankSum=0.357;QD=1.81;ReadPosRankSum=-1.448;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:21,73:94:99:200,0,153 chrVIII 525672 . T A 169.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;DP=97;Dels=0.00;FS=133.291;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.74;MQ0=12;MQRankSum=-0.975;QD=1.74;ReadPosRankSum=-1.394;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:23,74:97:99:199,0,190 chrVIII 525675 . C A 164.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;DP=96;Dels=0.00;FS=130.837;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.62;MQ0=15;MQRankSum=0.558;QD=1.71;ReadPosRankSum=-1.082;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:26,70:96:99:194,0,176 chrVIII 525676 . T G 163.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.378;DP=96;Dels=0.00;FS=130.837;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.62;MQ0=15;MQRankSum=-1.151;QD=1.70;ReadPosRankSum=-1.192;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:26,70:96:99:193,0,187 chrVIII 525679 . T C 158.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.555;DP=105;Dels=0.00;FS=125.400;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.91;MQ0=15;MQRankSum=-0.160;QD=1.50;ReadPosRankSum=-0.706;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:27,78:105:99:188,0,189 chrVIII 525692 . T G 236.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.419;DP=122;Dels=0.00;FS=149.097;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=24.06;MQ0=24;MQRankSum=-1.035;QD=1.93;ReadPosRankSum=-2.260;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:36,86:122:99:266,0,180 chrVIII 525694 . C A 238.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;DP=122;Dels=0.00;FS=149.097;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=24.06;MQ0=24;MQRankSum=-0.883;QD=1.95;ReadPosRankSum=-1.739;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:36,86:122:99:268,0,149 chrVIII 525700 . A T 279.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;DP=130;Dels=0.00;FS=140.167;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=23.99;MQ0=27;MQRankSum=-1.515;QD=2.15;ReadPosRankSum=-1.596;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:39,90:130:99:309,0,183 chrVIII 525703 . C T 271.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.311;DP=130;Dels=0.00;FS=150.763;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=23.72;MQ0=29;MQRankSum=-0.666;QD=2.08;ReadPosRankSum=-1.559;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:40,90:130:99:301,0,169 chrVIII 525714 . A G 271.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278;DP=127;Dels=0.00;FS=137.851;HaplotypeScore=76.5979;MLEAC=1;MLEAF=0.500;MQ=22.97;MQ0=34;MQRankSum=0.161;QD=2.13;ReadPosRankSum=-0.720;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:44,82:127:99:301,0,145 chrVIII 525718 . A T 91.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;DP=124;Dels=0.00;FS=18.523;HaplotypeScore=28.4090;MLEAC=1;MLEAF=0.500;MQ=22.66;MQ0=37;MQRankSum=-0.395;QD=0.73;ReadPosRankSum=-6.882;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,28:124:99:121,0,125 chrVIII 525720 . T A 115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.593;DP=124;Dels=0.00;FS=80.948;HaplotypeScore=26.4513;MLEAC=1;MLEAF=0.500;MQ=22.36;MQ0=39;MQRankSum=-0.230;QD=0.93;ReadPosRankSum=-3.699;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:48,28:124:99:145,0,115 chrVIII 525730 . T C 68.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.043;DP=104;Dels=0.00;FS=83.073;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=20.39;MQ0=48;MQRankSum=-1.932;QD=0.65;ReadPosRankSum=1.225;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:56,48:104:98:98,0,109 chrVIII 525733 . T C 69.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.361;DP=105;Dels=0.00;FS=83.073;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=20.09;MQ0=50;MQRankSum=1.124;QD=0.66;ReadPosRankSum=1.351;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:57,48:105:99:99,0,105 chrVIII 525736 . T C 71.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561;DP=105;Dels=0.00;FS=83.653;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=20.16;MQ0=49;MQRankSum=-0.322;QD=0.68;ReadPosRankSum=1.264;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:56,49:105:81:101,0,81 chrVIII 525744 . G C 100.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572;DP=95;Dels=0.00;FS=59.834;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=18.46;MQ0=52;MQRankSum=-0.398;QD=1.05;ReadPosRankSum=1.610;SB=-3.019e+00 GT:AD:DP:GQ:PL 0/1:56,38:95:31:130,0,31 chrVIII 525746 . A G 112.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;DP=95;Dels=0.00;FS=59.834;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=18.46;MQ0=52;MQRankSum=-0.095;QD=1.18;ReadPosRankSum=1.762;SB=-3.019e+00 GT:AD:DP:GQ:PL 0/1:57,38:95:31:142,0,31 chrVIII 525749 . G T 109.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.464;DP=93;Dels=0.00;FS=50.489;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=18.41;MQ0=51;MQRankSum=0.064;QD=1.17;ReadPosRankSum=1.221;SB=-3.020e+00 GT:AD:DP:GQ:PL 0/1:55,38:93:28:139,0,28 chrVIII 525763 . T A 107.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.788;DP=72;Dels=0.00;FS=13.424;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=15.34;MQ0=49;MQRankSum=0.946;QD=1.49;ReadPosRankSum=0.946;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:51,21:72:15:140,15,0 chrVIII 525767 . T C 74.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=66;Dels=0.00;FS=12.553;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.89;MQ0=48;MQRankSum=0.193;QD=1.13;ReadPosRankSum=1.542;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:48,17:66:12:107,12,0 chrVIII 525769 . A G 76.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=64;Dels=0.00;FS=12.553;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.11;MQ0=46;MQRankSum=-0.578;QD=1.20;ReadPosRankSum=1.542;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:47,17:64:12:109,12,0 chrVIII 525775 . T C 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.23;MQ0=43;QD=0.39;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:43,11:54:6:52,6,0 chrVIII 525778 . C T 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.23;MQ0=41;QD=0.51;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:41,8:49:6:56,6,0 chrVIII 525784 . T C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.11;MQ0=39;QD=0.45;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:38,5:44:6:51,6,0 chrVIII 525787 . C T 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.02;MQ0=37;QD=0.47;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:37,3:40:6:50,6,0 chrVIII 525817 . T C 323 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.66;MQ0=18;QD=8.07;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:18,22:40:48:356,48,0 chrVIII 525820 . T C 347 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=39;Dels=0.00;FS=9.208;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.55;MQ0=14;MQRankSum=-0.624;QD=8.90;ReadPosRankSum=1.595;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:15,24:39:51:380,51,0 chrVIII 525838 . G A 789 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.02;MQ0=5;QD=16.10;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:5,44:49:99:822,99,0 chrVIII 525868 . A G 1799 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;QD=18.36;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1832,216,0 chrVIII 525958 . A C 261 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.131;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=17.82;MQ0=28;MQRankSum=0.121;QD=4.42;ReadPosRankSum=2.211;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:36:294,36,0 chrVIII 525980 . G C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.52;MQ0=18;QD=0.80;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,26:26:6:52,6,0 chrVIII 526078 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.21;MQ0=0;QD=7.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:55,6,0 chrVIII 526081 . G A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.21;MQ0=0;QD=7.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:54,6,0 chrVIII 526093 . C T 59.97 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=6.00;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:92,9,0 chrVIII 526097 . G A 76.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=7.65;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:109,12,0 chrVIII 526098 . A C 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=6.85;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:101,12,0 chrVIII 526100 . T C 70.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=7.05;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:103,12,0 chrVIII 526102 . G A 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=7.35;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:106,12,0 chrVIII 526105 . T A 98.26 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=5.78;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:15:131,15,0 chrVIII 526111 . T C 98.26 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=5.78;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:15:131,15,0 chrVIII 526117 . T C 88.26 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=5.19;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:15:121,15,0 chrVIII 526127 . A G 95.26 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=5.29;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:15:128,15,0 chrVIII 526144 . T A 102.26 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;QD=5.38;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:15:135,15,0 chrVIII 526147 . C T 92.26 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;QD=4.86;SB=-2.723e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:15:125,15,0 chrVIII 526148 . T A 102.26 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;QD=5.38;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:15:135,15,0 chrVIII 526150 . T C 100.26 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;QD=5.28;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:15:133,15,0 chrVIII 526157 . G A 52.97 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=3.53;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:85,9,0 chrVIII 526159 . T C 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=3.20;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:80,9,0 chrVIII 526160 . G A 52.97 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=3.53;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:85,9,0 chrVIII 526162 . C T 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=3.26;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:81,9,0 chrVIII 526165 . A C 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=3.20;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:80,9,0 chrVIII 526168 . T C 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=3.26;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:81,9,0 chrVIII 526174 . A G 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=0;MQRankSum=0.935;QD=1.45;ReadPosRankSum=1.470;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:1,12:13:6:50,6,0 chrVIII 526696 . C T 306 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=2;QD=5.28;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:42:339,42,0 chrVIII 526699 . C T 317 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=2;QD=5.66;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:42:350,42,0 chrVIII 526732 . T C 302 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=1;QD=5.92;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:42:335,42,0 chrVIII 526744 . T C 233 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.20;MQ0=0;QD=5.18;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,44:45:33:266,33,0 chrVIII 526750 . G A 116.13 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.05;MQ0=0;QD=5.05;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:18:149,18,0 chrVIII 526757 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=1.36;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,16:16:6:53,6,0 chrVIII 526762 . T A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=2.38;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:55,6,0 chrVIII 526804 . T C 82.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.09;MQ0=1;MQRankSum=-0.751;QD=8.23;ReadPosRankSum=0.751;SB=-8.076e+01 GT:AD:DP:GQ:PL 1/1:2,8:10:15:115,15,0 chrVIII 526825 . C T 436 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.80;MQ0=1;QD=19.82;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:1,21:22:54:469,54,0 chrVIII 526835 . G A 491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;DP=30;Dels=0.00;FS=2.741;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.44;MQ0=1;MQRankSum=0.895;QD=16.37;ReadPosRankSum=1.898;SB=-1.892e+02 GT:AD:DP:GQ:PL 1/1:4,26:30:44:524,44,0 chrVIII 526849 . C T 579 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.50;MQ0=1;QD=14.12;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:72:612,72,0 chrVIII 526855 . T C 634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=46;Dels=0.00;FS=4.491;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=22.21;MQ0=1;MQRankSum=1.270;QD=13.78;ReadPosRankSum=1.655;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:84:667,84,0 chrVIII 526921 . T C 1889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.300;DP=139;Dels=0.00;FS=1.489;HaplotypeScore=16.3458;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=2;MQRankSum=0.937;QD=13.59;ReadPosRankSum=3.518;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:9,129:139:99:1922,132,0 chrVIII 526930 . C T 1528.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.005;DP=131;Dels=0.00;FS=17.242;HaplotypeScore=11.6808;MLEAC=1;MLEAF=0.500;MQ=23.25;MQ0=2;MQRankSum=1.162;QD=11.66;ReadPosRankSum=2.131;SB=-8.930e+02 GT:AD:DP:GQ:PL 0/1:22,109:131:99:1558,0,160 chrVIII 526939 . T C 133.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.266;DP=127;Dels=0.00;FS=17.327;HaplotypeScore=5.0503;MLEAC=1;MLEAF=0.500;MQ=23.50;MQ0=2;MQRankSum=-1.007;QD=1.05;ReadPosRankSum=5.209;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,22:127:99:163,0,1492 chrVIII 526966 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.99;MQ0=2;QD=17.01;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1343,176,0 chrVIII 526969 . C T 1051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.566;DP=68;Dels=0.00;FS=22.694;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.68;MQ0=2;MQRankSum=0.820;QD=15.46;ReadPosRankSum=-0.605;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:4,64:68:99:1084,130,0 chrVIII 526999 . C T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DP=12;Dels=0.00;FS=20.792;HaplotypeScore=5.8404;MLEAC=1;MLEAF=0.500;MQ=17.80;MQ0=2;MQRankSum=-0.546;QD=1.84;ReadPosRankSum=2.166;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:5,7:12:47:52,0,47 chrVIII 527002 . T C 37.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.15;MQ0=1;QD=4.75;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:70,9,0 chrVIII 527032 . T A 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=12.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:70,9,0 chrVIII 527035 . A C 35.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=11.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:68,9,0 chrVIII 527038 . T C 35.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=11.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:68,9,0 chrVIII 527041 . C T 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=12.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:70,9,0 chrVIII 527053 . C T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=5.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:48,6,0 chrVIII 527056 . A C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;MQRankSum=0.736;QD=5.62;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,2:3:6:48,6,0 chrVIII 527065 . C T 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=14.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:77,9,0 chrVIII 527071 . A T 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.96;MQ0=0;MQRankSum=0.198;QD=2.03;ReadPosRankSum=-1.495;SB=-5.228e-03 GT:AD:DP:GQ:PL 0/1:2,5:7:37:44,0,37 chrVIII 527074 . C T 67.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.96;MQ0=0;QD=9.64;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:100,12,0 chrVIII 527077 . T G 13.25 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.02;MQ0=0;MQRankSum=1.067;QD=1.66;ReadPosRankSum=-0.572;SB=0.224 GT:AD:DP:GQ:PL 0/1:2,6:8:18:43,0,18 chrVIII 527080 . G A 18.10 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.67;MQ0=0;MQRankSum=0.751;QD=2.01;ReadPosRankSum=-0.751;SB=0.755 GT:AD:DP:GQ:PL 0/1:1,8:9:19:48,0,19 chrVIII 527086 . T C 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.28;MQ0=0;QD=3.66;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:76,9,0 chrVIII 527089 . T C 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.47;MQ0=0;QD=3.13;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:79,9,0 chrVIII 527092 . G C 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.47;MQ0=0;QD=2.80;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:74,9,0 chrVIII 527101 . C T 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=1;MLEAF=0.500;MQ=21.66;MQ0=0;MQRankSum=-0.184;QD=0.91;ReadPosRankSum=-3.428;SB=-6.863e-03 GT:AD:DP:GQ:PL 0/1:16,6:22:38:50,0,38 chrVIII 527104 . C T 86.26 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=21.66;MQ0=0;QD=3.92;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:15:119,15,0 chrVIII 527108 . C T 84.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.788;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=21.66;MQ0=0;MQRankSum=0.000;QD=3.83;ReadPosRankSum=1.261;SB=-2.295e-01 GT:AD:DP:GQ:PL 1/1:1,21:22:15:117,15,0 chrVIII 527109 . A T 85.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.261;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=21.66;MQ0=0;MQRankSum=-0.315;QD=3.88;ReadPosRankSum=1.261;SB=-2.295e-01 GT:AD:DP:GQ:PL 1/1:1,21:22:15:118,15,0 chrVIII 527110 . A G 69.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.9135;MLEAC=1;MLEAF=0.500;MQ=22.03;MQ0=0;MQRankSum=-0.927;QD=3.01;ReadPosRankSum=2.019;SB=1.23 GT:AD:DP:GQ:PL 0/1:2,21:23:10:99,0,10 chrVIII 527119 . C T 135.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.9401;MLEAC=2;MLEAF=1.00;MQ=21.36;MQ0=0;QD=5.00;SB=-7.496e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:21:168,21,0 chrVIII 527125 . T C 147.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.9257;MLEAC=2;MLEAF=1.00;MQ=21.22;MQ0=0;QD=5.25;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:24:180,24,0 chrVIII 527128 . T G 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=4.9017;MLEAC=1;MLEAF=0.500;MQ=21.83;MQ0=0;MQRankSum=-1.041;QD=1.00;ReadPosRankSum=1.041;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,9:30:60:60,0,97 chrVIII 527134 . C T 203 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=4.9017;MLEAC=2;MLEAF=1.00;MQ=21.40;MQ0=0;QD=6.77;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,30:30:30:236,30,0 chrVIII 527137 . T C 202 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=4.9017;MLEAC=2;MLEAF=1.00;MQ=21.40;MQ0=0;QD=6.73;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,30:30:30:235,30,0 chrVIII 527149 . T C 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=9.8217;MLEAC=1;MLEAF=0.500;MQ=21.40;MQ0=0;MQRankSum=-0.800;QD=1.60;ReadPosRankSum=3.763;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,11:30:78:78,0,92 chrVIII 527155 . G A 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.811;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=1;MLEAF=0.500;MQ=19.52;MQ0=0;MQRankSum=-1.992;QD=2.67;ReadPosRankSum=1.359;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:7,11:18:78:78,0,87 chrVIII 527159 . T C 51.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.409;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=3.8780;MLEAC=1;MLEAF=0.500;MQ=19.31;MQ0=0;MQRankSum=-0.367;QD=2.68;ReadPosRankSum=0.776;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:9,10:19:64:81,0,64 chrVIII 527161 . G A 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.608;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.9046;MLEAC=1;MLEAF=0.500;MQ=19.20;MQ0=0;MQRankSum=-1.625;QD=2.40;ReadPosRankSum=0.794;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:10,10:20:78:78,0,87 chrVIII 527164 . T C 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.9046;MLEAC=1;MLEAF=0.500;MQ=19.10;MQ0=0;MQRankSum=-1.936;QD=2.14;ReadPosRankSum=1.162;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,10:21:75:75,0,103 chrVIII 527166 . C G 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.9312;MLEAC=1;MLEAF=0.500;MQ=19.10;MQ0=0;MQRankSum=-1.373;QD=2.05;ReadPosRankSum=1.232;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,10:21:73:73,0,125 chrVIII 527167 . T A,C 174.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=19.10;MQ0=0;QD=8.29;SB=-6.630e-03 GT:AD:DP:GQ:PL 1/2:0,11,10:21:73:234,93,73,141,0,126 chrVIII 527169 . G C 237 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.9312;MLEAC=2;MLEAF=1.00;MQ=19.10;MQ0=0;QD=11.29;SB=-8.692e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:36:270,36,0 chrVIII 527170 . A C 233 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.9312;MLEAC=2;MLEAF=1.00;MQ=19.10;MQ0=0;QD=11.10;SB=-8.692e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:36:266,36,0 chrVIII 527173 . T C 235 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.85;MQ0=0;QD=10.22;SB=-8.696e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:36:268,36,0 chrVIII 527176 . C T 236 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.78;MQ0=0;QD=9.83;SB=-8.698e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:36:269,36,0 chrVIII 527191 . T C 296 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.91;MQ0=0;QD=11.84;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:42:329,42,0 chrVIII 527206 . A T 247.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=6.5055;MLEAC=1;MLEAF=0.500;MQ=21.88;MQ0=0;MQRankSum=1.035;QD=7.97;ReadPosRankSum=-2.049;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:10,21:31:95:277,0,95 chrVIII 527212 . T G 215.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.754;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=9.4257;MLEAC=1;MLEAF=0.500;MQ=21.01;MQ0=0;MQRankSum=0.657;QD=6.14;ReadPosRankSum=-0.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,24:35:99:245,0,116 chrVIII 527215 . G A 232.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.513;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=11.3724;MLEAC=1;MLEAF=0.500;MQ=20.72;MQ0=0;MQRankSum=1.569;QD=6.82;ReadPosRankSum=0.094;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:10,24:34:73:262,0,73 chrVIII 527216 . G A 375 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.672;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=11.3724;MLEAC=2;MLEAF=1.00;MQ=20.72;MQ0=0;MQRankSum=0.486;QD=11.03;ReadPosRankSum=1.761;SB=-9.047e-03 GT:AD:DP:GQ:PL 1/1:3,31:34:35:408,35,0 chrVIII 527218 . T G 362 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.264;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=9.7340;MLEAC=2;MLEAF=1.00;MQ=20.83;MQ0=0;MQRankSum=0.189;QD=10.97;ReadPosRankSum=1.245;SB=-9.047e-03 GT:AD:DP:GQ:PL 1/1:2,31:33:35:395,35,0 chrVIII 527225 . A G 342.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.523;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=9.7340;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=0;MQRankSum=-0.078;QD=7.60;ReadPosRankSum=2.646;SB=-1.122e+00 GT:AD:DP:GQ:PL 1/1:7,38:45:1:371,1,0 chrVIII 527236 . C T 53.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=14.7337;MLEAC=1;MLEAF=0.500;MQ=20.06;MQ0=0;MQRankSum=-0.964;QD=1.13;ReadPosRankSum=-3.111;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,12:47:83:83,0,305 chrVIII 527239 . C T 347.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.330;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=14.7337;MLEAC=2;MLEAF=1.00;MQ=20.06;MQ0=0;MQRankSum=0.604;QD=7.39;ReadPosRankSum=3.019;SB=-4.137e+00 GT:AD:DP:GQ:PL 1/1:5,42:47:1:376,1,0 chrVIII 527242 . T C 264.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=13.7603;MLEAC=1;MLEAF=0.500;MQ=20.22;MQ0=0;MQRankSum=-1.190;QD=5.87;ReadPosRankSum=2.787;SB=-6.538e-03 GT:AD:DP:GQ:PL 0/1:11,34:45:49:294,0,49 chrVIII 527243 . C T 349.21 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.184;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=12.8271;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=0;MQRankSum=0.102;QD=7.94;ReadPosRankSum=3.246;SB=-2.194e-01 GT:AD:DP:GQ:PL 1/1:4,40:44:16:382,16,0 chrVIII 527244 . A T 342.21 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.469;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=12.8271;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=0;MQRankSum=0.265;QD=7.78;ReadPosRankSum=3.246;SB=-2.194e-01 GT:AD:DP:GQ:PL 1/1:4,40:44:16:375,16,0 chrVIII 527245 . A G 362.10 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.329;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=7.7872;MLEAC=2;MLEAF=1.00;MQ=20.43;MQ0=0;MQRankSum=0.384;QD=8.62;ReadPosRankSum=2.333;SB=-1.145e-01 GT:AD:DP:GQ:PL 1/1:2,40:42:19:395,19,0 chrVIII 527254 . C T 474 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=20.45;MQ0=0;QD=10.30;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:66:507,66,0 chrVIII 527260 . T C 462 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=0;QD=10.50;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:66:495,66,0 chrVIII 527269 . C T 405 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.46;MQ0=0;QD=10.95;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:57:438,57,0 chrVIII 527270 . A G 277.34 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.605;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.46;MQ0=0;MQRankSum=0.556;QD=7.50;ReadPosRankSum=1.751;SB=-3.161e-01 GT:AD:DP:GQ:PL 0/1:6,31:37:8:307,0,8 chrVIII 527274 . G A 273.34 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.998;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.46;MQ0=0;MQRankSum=0.515;QD=7.39;ReadPosRankSum=1.545;SB=-3.161e-01 GT:AD:DP:GQ:PL 0/1:6,31:37:8:303,0,8 chrVIII 527312 . T G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.50;MQ0=6;QD=1.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,4:8:6:43,6,0 chrVIII 527398 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.50;MQ0=5;QD=3.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:6:54,6,0 chrVIII 527776 . T C 220 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.75;MQ0=1;QD=12.94;SB=-2.200e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:30:253,30,0 chrVIII 527783 . T C 217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.12;MQ0=1;MQRankSum=-0.306;QD=12.06;ReadPosRankSum=1.531;SB=-4.300e+01 GT:AD:DP:GQ:PL 1/1:1,17:18:30:250,30,0 chrVIII 527797 . T G 230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.35;MQ0=2;MQRankSum=-1.735;QD=12.11;ReadPosRankSum=1.531;SB=-4.300e+01 GT:AD:DP:GQ:PL 1/1:2,17:19:33:263,33,0 chrVIII 527809 . G C 274 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.84;MQ0=3;QD=13.70;SB=-4.300e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:36:307,36,0 chrVIII 527851 . G A 42.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.35;MQ0=3;QD=6.14;SB=-4.521e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:75,9,0 chrVIII 527877 . C T 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.02;MQ0=3;QD=2.98;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:46,6,0 chrVIII 527890 . C T 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.51;MQ0=2;QD=3.97;SB=-2.376e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:47,6,0 chrVIII 527987 . A G 70.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.054;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.70;MQ0=9;MQRankSum=1.203;QD=3.92;ReadPosRankSum=2.054;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,14:18:12:103,12,0 chrVIII 528019 . G A 79.51 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.05;MQ0=5;QD=5.30;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:112,12,0 chrVIII 553195 . A G 44.97 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.11;MQ0=7;QD=1.80;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:9:77,9,0 chrVIII 553196 . A C 44.97 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=21.30;MQ0=15;QD=1.25;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,28:36:9:77,9,0 chrVIII 553226 . A T 1059 filter AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.63;MQ0=105;QD=5.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:1092,123,0 chrVIII 553247 . T C 1943 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.76;MQ0=145;MQRankSum=0.313;QD=6.35;ReadPosRankSum=2.419;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,304:306:99:1976,231,0 chrVIII 553268 . T C 2630 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=379;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.34;MQ0=144;MQRankSum=-0.151;QD=6.94;ReadPosRankSum=2.429;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,377:379:99:2663,306,0 chrVIII 553274 . C T 2806 filter AC=2;AF=1.00;AN=2;DP=389;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=23.66;MQ0=142;QD=7.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,389:389:99:2839,318,0 chrVIII 553325 . T C 1562 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.38;MQ0=41;MQRankSum=2.351;QD=8.18;ReadPosRankSum=2.368;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:1595,180,0 chrVIII 553343 . T C 966 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.329;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=25.20;MQ0=12;MQRankSum=-2.005;QD=8.86;ReadPosRankSum=3.366;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,104:109:99:999,111,0 chrVIII 553355 . T C 584 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.85;MQ0=11;MQRankSum=-0.406;QD=6.71;ReadPosRankSum=2.288;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:2,85:87:72:617,72,0 chrVIII 553366 . G A 369 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.92;MQ0=10;QD=5.77;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:45:402,45,0 chrVIII 553391 . T C 785 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.511;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=24.40;MQ0=38;MQRankSum=-1.714;QD=4.09;ReadPosRankSum=5.511;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:11,180:192:96:818,96,0 chrVIII 553394 . T C 784 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.956;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.1080;MLEAC=2;MLEAF=1.00;MQ=25.02;MQ0=43;MQRankSum=-1.953;QD=3.61;ReadPosRankSum=4.472;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,210:217:96:817,96,0 chrVIII 553433 . C T 8046.01 filter AC=2;AF=1.00;AN=2;DP=519;Dels=0.00;FS=0.000;HaplotypeScore=19.7529;MLEAC=2;MLEAF=1.00;MQ=34.97;MQ0=97;QD=15.50;SB=-3.066e+03 GT:AD:DP:GQ:PL 1/1:0,519:519:99:8046,868,0 chrVIII 553472 . G A 14272.01 filter AC=2;AF=1.00;AN=2;DP=726;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=91;QD=19.66;SB=-6.897e+03 GT:AD:DP:GQ:PL 1/1:0,726:726:99:14272,1555,0 chrVIII 553557 . T A 104.13 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=8.68;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:18:137,18,0 chrVIII 553629 . A T 32.97 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.96;MQ0=0;QD=2.54;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:65,9,0 chrVIII 553635 . A G 486 filter AC=2;AF=1.00;AN=2;DP=418;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;QD=1.16;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,409:418:63:519,63,0 chrVIII 553644 . A G 1689 filter AC=2;AF=1.00;AN=2;DP=522;Dels=0.00;FS=0.000;HaplotypeScore=38.6413;MLEAC=2;MLEAF=1.00;MQ=33.68;MQ0=0;QD=3.24;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,517:522:99:1722,210,0 chrVIII 553739 . G C 18953.01 filter AC=2;AF=1.00;AN=2;DP=832;Dels=0.00;FS=0.000;HaplotypeScore=37.4526;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=22.78;SB=-9.886e+03 GT:AD:DP:GQ:PL 1/1:1,826:832:99:18953,2233,0 chrVIII 553912 . G C 13831.01 filter AC=2;AF=1.00;AN=2;DP=659;DS;Dels=0.00;FS=0.000;HaplotypeScore=41.9434;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=20.99;SB=-4.193e+03 GT:AD:DP:GQ:PL 1/1:0,652:659:99:13831,1542,0 chrVIII 553982 . T C 11081.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=599;Dels=0.00;FS=9.470;HaplotypeScore=27.6118;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;MQRankSum=-0.374;QD=18.50;ReadPosRankSum=2.425;SB=-5.075e+03 GT:AD:DP:GQ:PL 1/1:2,593:599:99:11081,1277,0 chrVIII 554022 . G C 8040.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=506;Dels=0.00;FS=0.000;HaplotypeScore=13.1214;MLEAC=2;MLEAF=1.00;MQ=34.92;MQ0=0;QD=15.89;SB=-4.307e+03 GT:AD:DP:GQ:PL 1/1:0,505:506:99:8040,912,0 chrVIII 554028 . C T 7353.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.393;DP=497;Dels=0.00;FS=68.302;HaplotypeScore=5.9798;MLEAC=2;MLEAF=1.00;MQ=33.46;MQ0=0;MQRankSum=0.909;QD=14.79;ReadPosRankSum=1.406;SB=-3.168e+03 GT:AD:DP:GQ:PL 1/1:13,481:497:99:7353,828,0 chrVIII 554031 . C A 7054.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.729;DP=489;Dels=0.00;FS=68.343;HaplotypeScore=2.6979;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;MQRankSum=3.172;QD=14.43;ReadPosRankSum=0.809;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:13,476:489:99:7054,795,0 chrVIII 554038 . T G 5825.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.308;DP=456;Dels=0.00;FS=65.800;HaplotypeScore=5.0932;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=0;MQRankSum=1.269;QD=12.77;ReadPosRankSum=1.022;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:12,444:456:99:5825,683,0 chrVIII 554063 . A G 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.928;DP=305;Dels=0.01;FS=6.124;HaplotypeScore=1698.5145;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;MQRankSum=-4.236;QD=8.57;ReadPosRankSum=7.232;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:25,278:303:99:2648,320,0 chrVIII 554104 . T C 2082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.431;DP=271;Dels=0.00;FS=68.176;HaplotypeScore=8.3511;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;MQRankSum=2.675;QD=7.68;ReadPosRankSum=-0.936;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:16,255:271:99:2115,222,0 chrVIII 554128 . A C 440 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.664;DP=259;Dels=0.00;FS=64.201;HaplotypeScore=183.5832;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=0;MQRankSum=2.673;QD=1.70;ReadPosRankSum=-1.302;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:22,237:259:54:473,54,0 chrVIII 554135 . G A 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.841;DP=193;Dels=0.00;FS=59.327;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;MQRankSum=-1.159;QD=0.12;ReadPosRankSum=0.800;SB=1.24 GT:AD:DP:GQ:PL 1/1:175,18:193:6:55,6,0 chrVIII 554138 . G C 2003 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.318;DP=194;Dels=0.00;FS=62.382;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=0;MQRankSum=2.882;QD=10.32;ReadPosRankSum=-0.082;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:19,175:194:99:2036,204,0 chrVIII 554142 . G A 2440 SnpCluster AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=2.6500;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=0;QD=9.38;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:2473,270,0 chrVIII 554151 . T G 2353 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=27.49;MQ0=0;QD=8.53;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:2386,279,0 chrVIII 554157 . T C 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=292;Dels=0.00;FS=3.790;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=0;MQRankSum=-0.130;QD=8.99;ReadPosRankSum=1.661;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:1,291:292:99:2659,309,0 chrVIII 554162 . C T 2997 SnpCluster AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=9.92;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:0,302:302:99:3030,345,0 chrVIII 554170 . T C 3127 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.433;DP=310;Dels=0.00;FS=16.918;HaplotypeScore=4.2471;MLEAC=2;MLEAF=1.00;MQ=31.11;MQ0=0;MQRankSum=-3.203;QD=10.09;ReadPosRankSum=3.422;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:4,306:310:99:3160,369,0 chrVIII 554171 . C T 3272.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=311;Dels=0.00;FS=12.696;HaplotypeScore=4.2471;MLEAC=2;MLEAF=1.00;MQ=31.10;MQ0=0;MQRankSum=-2.177;QD=10.52;ReadPosRankSum=1.597;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:3,308:311:99:3272,372,0 chrVIII 554202 . A G 4738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.433;DP=337;Dels=0.00;FS=4.733;HaplotypeScore=8.7019;MLEAC=2;MLEAF=1.00;MQ=38.69;MQ0=0;MQRankSum=0.124;QD=14.06;ReadPosRankSum=0.505;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:1,335:337:99:4738,543,0 chrVIII 554280 . C T 6990.01 filter AC=2;AF=1.00;AN=2;DP=392;Dels=0.00;FS=0.000;HaplotypeScore=11.3175;MLEAC=2;MLEAF=1.00;MQ=40.68;MQ0=28;QD=17.83;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,390:392:99:6990,766,0 chrVIII 554298 . T A 7994.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.725;DP=453;Dels=0.00;FS=2.405;HaplotypeScore=45.8342;MLEAC=2;MLEAF=1.00;MQ=41.60;MQ0=28;MQRankSum=-2.246;QD=17.65;ReadPosRankSum=2.926;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:3,450:453:99:7994,885,0 chrVIII 554352 . A G 8794.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.240;DP=602;Dels=0.00;FS=3.936;HaplotypeScore=19.6171;MLEAC=1;MLEAF=0.500;MQ=46.45;MQ0=4;MQRankSum=1.705;QD=14.61;ReadPosRankSum=-0.326;SB=-2.054e+03 GT:AD:DP:GQ:PL 0/1:85,513:602:99:8794,0,451 chrVIII 554362 . A T 12276.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=573;Dels=0.00;FS=7.067;HaplotypeScore=34.0291;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=3;MQRankSum=0.960;QD=21.42;ReadPosRankSum=1.702;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:1,572:573:99:12276,1374,0 chrVIII 554443 . C T 9316.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.672;DP=583;Dels=0.00;FS=0.905;HaplotypeScore=35.2010;MLEAC=1;MLEAF=0.500;MQ=56.98;MQ0=0;MQRankSum=0.986;QD=15.98;ReadPosRankSum=0.204;SB=-3.437e+03 GT:AD:DP:GQ:PL 0/1:102,477:583:99:9316,0,808 chrVIII 554491 . G T 752.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.761;DP=678;Dels=0.00;FS=32.526;HaplotypeScore=49.0232;MLEAC=1;MLEAF=0.500;MQ=54.52;MQ0=3;MQRankSum=3.655;QD=1.11;ReadPosRankSum=2.366;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:569,109:678:99:782,0,10847 chrVIII 554500 . T C 10890.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.147;DP=691;Dels=0.00;FS=27.767;HaplotypeScore=59.6781;MLEAC=1;MLEAF=0.500;MQ=54.02;MQ0=3;MQRankSum=0.524;QD=15.76;ReadPosRankSum=-3.035;SB=-5.622e+03 GT:AD:DP:GQ:PL 0/1:104,581:691:99:10890,0,561 chrVIII 554602 . T C 751.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.306;DP=1000;DS;Dels=0.00;FS=35.544;HaplotypeScore=86.2632;MLEAC=1;MLEAF=0.500;MQ=45.69;MQ0=13;MQRankSum=4.849;QD=0.75;ReadPosRankSum=3.527;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:855,140:1000:99:781,0,14932 chrVIII 554632 . G C 1046.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.313;DP=972;DS;Dels=0.00;FS=22.102;HaplotypeScore=69.8782;MLEAC=1;MLEAF=0.500;MQ=46.54;MQ0=4;MQRankSum=10.796;QD=1.08;ReadPosRankSum=-0.614;SB=-4.880e+02 GT:AD:DP:GQ:PL 0/1:813,151:972:99:1076,0,12830 chrVIII 554827 . T C 8296.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.209;DP=1000;DS;Dels=0.00;FS=148.036;HaplotypeScore=53.6712;MLEAC=1;MLEAF=0.500;MQ=29.75;MQ0=159;MQRankSum=-10.028;QD=8.30;ReadPosRankSum=-1.085;SB=-2.692e+03 GT:AD:DP:GQ:PL 0/1:184,810:1000:99:8296,0,1681 chrVIII 554852 . A G 7849.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.071;DP=892;DS;Dels=0.00;FS=121.100;HaplotypeScore=20.0196;MLEAC=1;MLEAF=0.500;MQ=34.15;MQ0=119;MQRankSum=-16.788;QD=8.80;ReadPosRankSum=4.126;SB=-1.976e+03 GT:AD:DP:GQ:PL 0/1:177,706:892:99:7849,0,2273 chrVIII 554853 . C A 8073.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.149;DP=883;DS;Dels=0.00;FS=149.546;HaplotypeScore=21.4122;MLEAC=1;MLEAF=0.500;MQ=34.11;MQ0=114;MQRankSum=-16.308;QD=9.14;ReadPosRankSum=3.320;SB=-2.029e+03 GT:AD:DP:GQ:PL 0/1:168,710:883:99:8073,0,2051 chrVIII 554984 . T C 17158.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.672;DP=992;DS;Dels=0.00;FS=15.184;HaplotypeScore=44.2854;MLEAC=2;MLEAF=1.00;MQ=32.21;MQ0=163;MQRankSum=-3.058;QD=17.30;ReadPosRankSum=3.792;SB=-9.105e+03 GT:AD:DP:GQ:PL 1/1:5,983:992:99:17158,1968,0 chrVIII 555074 . C A 1097.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.405;DP=947;DS;Dels=0.00;FS=22.026;HaplotypeScore=74.1185;MLEAC=1;MLEAF=0.500;MQ=51.76;MQ0=12;MQRankSum=2.190;QD=1.16;ReadPosRankSum=-0.789;SB=-6.390e+02 GT:AD:DP:GQ:PL 0/1:768,170:947:99:1127,0,14593 chrVIII 555085 . A G 620.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.709;DP=1000;DS;Dels=0.00;FS=9.399;HaplotypeScore=72.7413;MLEAC=1;MLEAF=0.500;MQ=52.55;MQ0=14;MQRankSum=2.731;QD=0.62;ReadPosRankSum=-0.037;SB=-5.000e+02 GT:AD:DP:GQ:PL 0/1:830,158:1000:99:650,0,16638 chrVIII 555118 . A G 707.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.487;DP=996;DS;Dels=0.00;FS=4.817;HaplotypeScore=55.8152;MLEAC=1;MLEAF=0.500;MQ=52.72;MQ0=16;MQRankSum=3.051;QD=0.71;ReadPosRankSum=-1.966;SB=-5.350e+02 GT:AD:DP:GQ:PL 0/1:837,158:996:99:737,0,17685 chrVIII 555130 . C T 16665.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.496;DP=1000;DS;Dels=0.00;FS=4.936;HaplotypeScore=66.2240;MLEAC=1;MLEAF=0.500;MQ=51.35;MQ0=31;MQRankSum=1.935;QD=16.67;ReadPosRankSum=1.120;SB=-6.453e+03 GT:AD:DP:GQ:PL 0/1:157,838:1000:99:16665,0,729 chrVIII 555172 . T C 649.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.990;DP=916;DS;Dels=0.00;FS=11.259;HaplotypeScore=42.0693;MLEAC=1;MLEAF=0.500;MQ=47.83;MQ0=50;MQRankSum=-1.127;QD=0.71;ReadPosRankSum=1.238;SB=-3.290e+02 GT:AD:DP:GQ:PL 0/1:770,146:916:99:679,0,14283 chrVIII 555208 . G C 19515.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=959;DS;Dels=0.00;FS=3.792;HaplotypeScore=67.0842;MLEAC=2;MLEAF=1.00;MQ=47.13;MQ0=51;MQRankSum=-1.655;QD=20.35;ReadPosRankSum=1.713;SB=-9.178e+03 GT:AD:DP:GQ:PL 1/1:1,948:959:99:19515,2223,0 chrVIII 555391 . C T 14371.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.223;DP=937;DS;Dels=0.00;FS=6.658;HaplotypeScore=77.7284;MLEAC=1;MLEAF=0.500;MQ=46.69;MQ0=17;MQRankSum=4.289;QD=15.34;ReadPosRankSum=-1.682;SB=-8.103e+03 GT:AD:DP:GQ:PL 0/1:134,796:937:99:14371,0,534 chrVIII 555454 . T C 15234.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.045;DP=960;DS;Dels=0.00;FS=53.369;HaplotypeScore=46.0876;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=105;MQRankSum=-0.368;QD=15.87;ReadPosRankSum=5.033;SB=-3.781e+03 GT:AD:DP:GQ:PL 1/1:13,946:960:99:15234,1833,0 chrVIII 555479 . G A 12170.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.339;DP=987;DS;Dels=0.00;FS=18.209;HaplotypeScore=76.4717;MLEAC=1;MLEAF=0.500;MQ=36.87;MQ0=93;MQRankSum=-0.107;QD=12.33;ReadPosRankSum=-0.041;SB=-4.057e+03 GT:AD:DP:GQ:PL 0/1:132,848:987:88:12170,0,88 chrVIII 555583 . T G 1088.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.176;DP=948;DS;Dels=0.00;FS=8.092;HaplotypeScore=185.2988;MLEAC=1;MLEAF=0.500;MQ=40.03;MQ0=2;MQRankSum=0.508;QD=1.15;ReadPosRankSum=2.258;SB=-5.640e+02 GT:AD:DP:GQ:PL 0/1:794,151:948:99:1118,0,9883 chrVIII 555586 . T C 8134.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.211;DP=987;DS;Dels=0.00;FS=12.054;HaplotypeScore=203.2017;MLEAC=1;MLEAF=0.500;MQ=39.49;MQ0=2;MQRankSum=-2.032;QD=8.24;ReadPosRankSum=1.782;SB=-3.713e+03 GT:AD:DP:GQ:PL 0/1:305,681:987:99:8134,0,3338 chrVIII 555637 . G A 2003.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=14.320;DP=827;DS;Dels=0.00;FS=2.243;HaplotypeScore=47.5512;MLEAC=1;MLEAF=0.500;MQ=29.81;MQ0=85;MQRankSum=-3.344;QD=2.42;ReadPosRankSum=-1.747;SB=-7.930e+02 GT:AD:DP:GQ:PL 0/1:516,309:827:99:2033,0,4063 chrVIII 555652 . C T 1197.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.286;DP=761;DS;Dels=0.00;FS=16.814;HaplotypeScore=42.8507;MLEAC=1;MLEAF=0.500;MQ=26.90;MQ0=113;MQRankSum=-6.278;QD=1.57;ReadPosRankSum=-2.016;SB=-6.370e+02 GT:AD:DP:GQ:PL 0/1:490,264:759:99:1227,0,4473 chrVIII 555682 . C T 843.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.554;DP=817;DS;Dels=0.00;FS=36.888;HaplotypeScore=32.6340;MLEAC=1;MLEAF=0.500;MQ=23.27;MQ0=118;MQRankSum=-6.358;QD=1.03;ReadPosRankSum=1.288;SB=-7.920e+02 GT:AD:DP:GQ:PL 0/1:518,296:817:99:873,0,5083 chrVIII 555736 . C T 10693.01 filter AC=2;AF=1.00;AN=2;DP=958;Dels=0.00;FS=0.000;HaplotypeScore=20.4896;MLEAC=2;MLEAF=1.00;MQ=26.54;MQ0=21;QD=11.16;SB=-6.523e+03 GT:AD:DP:GQ:PL 1/1:0,957:958:99:10693,1200,0 chrVIII 555742 . A G 2781.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-14.354;DP=975;Dels=0.00;FS=11.516;HaplotypeScore=18.3479;MLEAC=1;MLEAF=0.500;MQ=26.48;MQ0=15;MQRankSum=0.463;QD=2.85;ReadPosRankSum=2.167;SB=-2.518e+03 GT:AD:DP:GQ:PL 0/1:553,421:975:99:2811,0,5274 chrVIII 555748 . C T 8942.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=885;Dels=0.00;FS=0.000;HaplotypeScore=10.2631;MLEAC=2;MLEAF=1.00;MQ=26.96;MQ0=5;QD=10.10;SB=-5.644e+03 GT:AD:DP:GQ:PL 1/1:0,880:885:99:8942,1008,0 chrVIII 555749 . T A 4257.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.189;DP=881;Dels=0.00;FS=5.957;HaplotypeScore=7.1631;MLEAC=1;MLEAF=0.500;MQ=27.01;MQ0=4;MQRankSum=-2.112;QD=4.83;ReadPosRankSum=1.399;SB=-1.912e+03 GT:AD:DP:GQ:PL 0/1:405,476:881:99:4257,0,2904 chrVIII 555751 . C T 8808.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=880;Dels=0.00;FS=0.000;HaplotypeScore=7.9518;MLEAC=2;MLEAF=1.00;MQ=27.30;MQ0=4;QD=10.01;SB=-5.509e+03 GT:AD:DP:GQ:PL 1/1:0,880:880:99:8808,1002,0 chrVIII 555754 . T A 8968.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.992;DP=900;Dels=0.00;FS=18.135;HaplotypeScore=11.7050;MLEAC=2;MLEAF=1.00;MQ=27.10;MQ0=4;MQRankSum=-0.170;QD=9.96;ReadPosRankSum=2.985;SB=-5.162e+03 GT:AD:DP:GQ:PL 1/1:3,897:900:99:8968,1008,0 chrVIII 555760 . C T 2539.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=15.214;DP=914;Dels=0.00;FS=5.515;HaplotypeScore=18.1994;MLEAC=1;MLEAF=0.500;MQ=27.01;MQ0=4;MQRankSum=2.688;QD=2.78;ReadPosRankSum=0.393;SB=-1.896e+03 GT:AD:DP:GQ:PL 0/1:531,383:914:99:2569,0,3698 chrVIII 555829 . C T 1204.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.703;DP=796;Dels=0.00;FS=71.257;HaplotypeScore=7.3539;MLEAC=1;MLEAF=0.500;MQ=31.38;MQ0=0;MQRankSum=-7.584;QD=1.51;ReadPosRankSum=-1.602;SB=-6.720e+02 GT:AD:DP:GQ:PL 0/1:425,369:796:99:1234,0,5352 chrVIII 555835 . C T 1129.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.854;DP=779;Dels=0.00;FS=54.176;HaplotypeScore=14.4521;MLEAC=1;MLEAF=0.500;MQ=31.64;MQ0=1;MQRankSum=-7.350;QD=1.45;ReadPosRankSum=-2.694;SB=-4.690e+02 GT:AD:DP:GQ:PL 0/1:425,353:779:99:1159,0,5397 chrVIII 555840 . G A 9041.01 filter AC=2;AF=1.00;AN=2;DP=786;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=31.66;MQ0=2;QD=11.50;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:0,786:786:99:9041,1043,0 chrVIII 555849 . C G 9280.01 filter AC=2;AF=1.00;AN=2;DP=812;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.68;MQ0=7;QD=11.43;SB=-3.132e+03 GT:AD:DP:GQ:PL 1/1:0,810:812:99:9280,1096,0 chrVIII 555860 . A G 9291.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.160;DP=767;Dels=0.00;FS=18.692;HaplotypeScore=7.0006;MLEAC=2;MLEAF=1.00;MQ=32.85;MQ0=16;MQRankSum=0.772;QD=12.11;ReadPosRankSum=4.441;SB=-3.402e+03 GT:AD:DP:GQ:PL 1/1:9,753:767:99:9291,1064,0 chrVIII 555862 . T G 9116.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.817;DP=773;Dels=0.00;FS=19.970;HaplotypeScore=10.3067;MLEAC=2;MLEAF=1.00;MQ=33.07;MQ0=18;MQRankSum=-2.920;QD=11.79;ReadPosRankSum=4.838;SB=-3.498e+03 GT:AD:DP:GQ:PL 1/1:8,765:773:99:9116,1064,0 chrVIII 555971 . T A 9508.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=446;Dels=0.00;FS=0.000;HaplotypeScore=14.2497;MLEAC=2;MLEAF=1.00;MQ=35.68;MQ0=0;MQRankSum=1.266;QD=21.32;ReadPosRankSum=1.724;SB=-4.275e+03 GT:AD:DP:GQ:PL 1/1:1,445:446:99:9508,1088,0 chrVIII 555993 . G A 6445.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.46;MQ0=0;QD=20.40;SB=-3.722e+03 GT:AD:DP:GQ:PL 1/1:0,316:316:99:6445,769,0 chrVIII 556005 . T A 6188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=322;Dels=0.00;FS=8.596;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.93;MQ0=0;MQRankSum=-0.514;QD=19.22;ReadPosRankSum=2.366;SB=-2.926e+03 GT:AD:DP:GQ:PL 1/1:2,320:322:99:6188,739,0 chrVIII 556006 . T G 5994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.484;DP=328;Dels=0.00;FS=30.040;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=34.71;MQ0=0;MQRankSum=-1.237;QD=18.27;ReadPosRankSum=4.476;SB=-2.783e+03 GT:AD:DP:GQ:PL 1/1:7,321:328:99:5994,739,0 chrVIII 556022 . G T 1663.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.770;DP=388;Dels=0.00;FS=2.174;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=36.38;MQ0=0;MQRankSum=-4.203;QD=4.29;ReadPosRankSum=-6.700;SB=-5.510e+02 GT:AD:DP:GQ:PL 0/1:251,137:388:99:1693,0,3981 chrVIII 556032 . C T 8479.01 filter AC=2;AF=1.00;AN=2;DP=437;Dels=0.00;FS=0.000;HaplotypeScore=4.1445;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;QD=19.40;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,436:437:99:8479,945,0 chrVIII 556053 . A G 11361.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=575;Dels=0.00;FS=0.000;HaplotypeScore=10.7626;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;MQRankSum=-0.195;QD=19.76;ReadPosRankSum=2.967;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:3,571:575:99:11361,1319,0 chrVIII 556148 . C T 7891.01 filter AC=2;AF=1.00;AN=2;DP=436;Dels=0.00;FS=0.000;HaplotypeScore=12.9067;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=14;QD=18.10;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:0,431:436:99:7891,920,0 chrVIII 556149 . G A 7722.01 filter AC=2;AF=1.00;AN=2;DP=426;Dels=0.00;FS=0.000;HaplotypeScore=12.9067;MLEAC=2;MLEAF=1.00;MQ=34.40;MQ0=14;QD=18.13;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,426:426:99:7722,896,0 chrVIII 556163 . G T 6117.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=374;Dels=0.00;FS=60.644;HaplotypeScore=3.9125;MLEAC=2;MLEAF=1.00;MQ=34.63;MQ0=11;MQRankSum=-1.622;QD=16.36;ReadPosRankSum=0.297;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:16,358:374:99:6117,492,0 chrVIII 556178 . A T 4993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=308;Dels=0.00;FS=2.568;HaplotypeScore=5.3052;MLEAC=2;MLEAF=1.00;MQ=36.55;MQ0=1;MQRankSum=-0.471;QD=16.21;ReadPosRankSum=2.867;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:3,291:308:99:4993,599,0 chrVIII 556221 . G A 1628 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=2;QD=15.65;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1661,195,0 chrVIII 556225 . A T 1569 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.901;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=2;MQRankSum=0.502;QD=15.85;ReadPosRankSum=4.081;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,91:99:99:1602,192,0 chrVIII 556234 . T C 1685 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.02;MQ0=2;QD=17.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1718,204,0 chrVIII 556243 . T G 1753 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=3;QD=18.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,93:96:99:1786,207,0 chrVIII 556244 . G A 1872 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=3;QD=19.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,93:96:99:1905,207,0 chrVIII 556248 . T C 1790 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=3;QD=16.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,106:109:99:1823,213,0 chrVIII 556256 . T G 1882 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.00;MQ0=3;QD=15.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1915,219,0 chrVIII 556263 . G A 1900 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.22;MQ0=3;QD=15.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1933,216,0 chrVIII 556264 . G A 1942 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.22;MQ0=3;QD=16.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1975,216,0 chrVIII 556273 . C G 1982 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=6;QD=13.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,135:144:99:2015,231,0 chrVIII 556277 . C T 1914 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.050;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.59;MQ0=9;MQRankSum=-0.550;QD=12.76;ReadPosRankSum=1.193;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:10,140:150:99:1947,167,0 chrVIII 556311 . G C 1990 filter AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.8015;MLEAC=2;MLEAF=1.00;MQ=22.70;MQ0=14;QD=10.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:2023,243,0 chrVIII 556324 . G T 604.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.733;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.8675;MLEAC=1;MLEAF=0.500;MQ=21.99;MQ0=13;MQRankSum=0.760;QD=3.34;ReadPosRankSum=-2.186;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,82:181:99:634,0,847 chrVIII 556341 . A G 548.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.210;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=21.27;MQ0=12;MQRankSum=-1.403;QD=3.47;ReadPosRankSum=-0.166;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,78:158:99:578,0,761 chrVIII 556344 . G A 556.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.814;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.6302;MLEAC=1;MLEAF=0.500;MQ=21.18;MQ0=11;MQRankSum=-1.686;QD=3.76;ReadPosRankSum=-0.571;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,75:148:99:586,0,647 chrVIII 556351 . G A 565.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=23.3265;MLEAC=1;MLEAF=0.500;MQ=20.96;MQ0=10;MQRankSum=-1.516;QD=4.09;ReadPosRankSum=-0.585;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,72:138:99:595,0,674 chrVIII 556354 . G A 444.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.770;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=34.3627;MLEAC=1;MLEAF=0.500;MQ=20.93;MQ0=10;MQRankSum=1.156;QD=3.36;ReadPosRankSum=-0.427;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,48:132:99:474,0,744 chrVIII 556360 . G T 387.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.094;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=55.3020;MLEAC=1;MLEAF=0.500;MQ=21.13;MQ0=7;MQRankSum=0.294;QD=3.39;ReadPosRankSum=-1.301;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,44:114:99:417,0,664 chrVIII 556365 . T G 900.05 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.273;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=44.3794;MLEAC=2;MLEAF=1.00;MQ=21.18;MQ0=3;MQRankSum=0.157;QD=9.68;ReadPosRankSum=5.733;SB=2.95 GT:AD:DP:GQ:PL 1/1:15,77:93:22:933,22,0 chrVIII 556366 . A C,T 748.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.155;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.1429;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.07;MQ0=3;MQRankSum=0.529;QD=8.13;ReadPosRankSum=5.733;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:15,49,28:92:99:808,202,229,507,0,579 chrVIII 556369 . G A 1071 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.733;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=43.5907;MLEAC=2;MLEAF=1.00;MQ=21.07;MQ0=3;MQRankSum=0.773;QD=11.64;ReadPosRankSum=5.733;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:15,77:92:99:1104,132,0 chrVIII 556370 . G A 1068 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=18.8040;MLEAC=2;MLEAF=1.00;MQ=21.35;MQ0=1;QD=13.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1101,132,0 chrVIII 556384 . C T 806 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=13.0652;MLEAC=2;MLEAF=1.00;MQ=22.59;MQ0=0;QD=15.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:839,102,0 chrVIII 556387 . A G 546.41 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.744;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=19.0222;MLEAC=2;MLEAF=1.00;MQ=23.46;MQ0=0;MQRankSum=-1.338;QD=11.63;ReadPosRankSum=1.771;SB=2.62 GT:AD:DP:GQ:PL 1/1:9,38:47:13:579,13,0 chrVIII 556389 . T C 334.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.105;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=15.8675;MLEAC=1;MLEAF=0.500;MQ=23.16;MQ0=0;MQRankSum=-0.377;QD=7.77;ReadPosRankSum=0.889;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,23:43:99:364,0,158 chrVIII 556397 . T C 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.694;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=19.5612;MLEAC=1;MLEAF=0.500;MQ=23.02;MQ0=0;MQRankSum=0.591;QD=1.39;ReadPosRankSum=0.334;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,9:33:76:76,0,171 chrVIII 556420 . T G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=3.9118;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=0;QD=1.72;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrVIII 556702 . A G 84.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.193;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=26.0775;MLEAC=2;MLEAF=1.00;MQ=22.79;MQ0=0;MQRankSum=1.156;QD=4.68;ReadPosRankSum=-1.156;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:1,17:18:15:117,15,0 chrVIII 556706 . G A 85.26 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=39.7231;MLEAC=2;MLEAF=1.00;MQ=23.48;MQ0=0;QD=4.26;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:1,19:20:15:118,15,0 chrVIII 556718 . A G 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.204;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=51.5364;MLEAC=2;MLEAF=1.00;MQ=24.89;MQ0=1;MQRankSum=1.422;QD=0.36;ReadPosRankSum=-2.122;SB=1.24 GT:AD:DP:GQ:PL 1/1:6,33:39:6:45,6,0 chrVIII 556764 . G A 325.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.862;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=38.8779;MLEAC=1;MLEAF=0.500;MQ=25.50;MQ0=2;MQRankSum=0.232;QD=4.06;ReadPosRankSum=2.593;SB=-3.334e-03 GT:AD:DP:GQ:PL 0/1:10,70:80:26:355,0,26 chrVIII 556769 . G A,T 371.04 filter AC=1,1;AF=0.500,0.500;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=22.2224;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.64;MQ0=2;QD=4.82;SB=-4.080e-02 GT:AD:DP:GQ:PL 1/2:0,55,21:77:48:431,90,48,341,0,329 chrVIII 556786 . G T 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.970;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=40.6302;MLEAC=1;MLEAF=0.500;MQ=25.67;MQ0=1;MQRankSum=0.315;QD=1.13;ReadPosRankSum=1.904;SB=-6.523e-03 GT:AD:DP:GQ:PL 0/1:19,19:70:58:109,0,58 chrVIII 556787 . A G 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.905;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=40.6302;MLEAC=1;MLEAF=0.500;MQ=25.77;MQ0=1;MQRankSum=1.501;QD=0.93;ReadPosRankSum=1.790;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,21:71:97:97,0,233 chrVIII 556808 . G A 333 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.198;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=37.5845;MLEAC=2;MLEAF=1.00;MQ=25.85;MQ0=0;MQRankSum=2.145;QD=6.28;ReadPosRankSum=3.302;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:5,48:53:42:366,42,0 chrVIII 556809 . G A 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.292;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=41.3394;MLEAC=1;MLEAF=0.500;MQ=25.85;MQ0=0;MQRankSum=1.897;QD=0.70;ReadPosRankSum=3.388;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,11:53:67:67,0,225 chrVIII 556812 . A G 283.17 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.325;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=41.0098;MLEAC=1;MLEAF=0.500;MQ=25.72;MQ0=0;MQRankSum=2.195;QD=5.55;ReadPosRankSum=1.382;SB=15.83 GT:AD:DP:GQ:PL 1/1:11,33:51:36:316,36,0 chrVIII 556813 . A T 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=38.0432;MLEAC=1;MLEAF=0.500;MQ=25.65;MQ0=0;MQRankSum=2.704;QD=0.70;ReadPosRankSum=2.910;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,11:50:65:65,0,204 chrVIII 556820 . G T 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.334;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=57.6443;MLEAC=1;MLEAF=0.500;MQ=26.23;MQ0=0;MQRankSum=0.860;QD=0.87;ReadPosRankSum=1.624;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,10:45:69:69,0,224 chrVIII 556825 . G A 66.11 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=31.5858;MLEAC=1;MLEAF=0.500;MQ=26.26;MQ0=0;MQRankSum=0.643;QD=3.31;ReadPosRankSum=-1.776;SB=-1.140e-01 GT:AD:DP:GQ:PL 0/1:10,10:20:13:96,0,13 chrVIII 562313 . C A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.55;MQ0=0;QD=2.55;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:6:49,6,0 chrVIII 562324 . T C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.77;MQ0=0;QD=2.09;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:50,6,0 chrVIII 562348 . G A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.92;MQ0=0;QD=1.78;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:49,6,0 chrVIII 562354 . C T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.92;MQ0=0;QD=1.88;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:50,6,0 chrVIII 562370 . C G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.24;MQ0=0;QD=1.57;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:50,6,0 chrVIII 562374 . G A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.24;MQ0=0;QD=1.57;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:50,6,0 chrVIII 562424 . A T 70.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.30;MQ0=0;MQRankSum=1.273;QD=4.70;ReadPosRankSum=0.579;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:1,14:15:12:103,12,0 chrVIII 562434 . A C 71.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.73;MQ0=0;QD=5.96;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:104,12,0 chrVIII 562435 . G C 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.73;MQ0=0;QD=6.04;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:105,12,0 chrVIII 562443 . A G 75.51 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=25.69;MQ0=0;QD=6.86;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:108,12,0 chrVIII 562446 . G A 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=2.6576;MLEAC=1;MLEAF=0.500;MQ=25.69;MQ0=0;MQRankSum=0.387;QD=1.29;ReadPosRankSum=-0.387;SB=-6.656e-03 GT:AD:DP:GQ:PL 0/1:6,5:11:42:44,0,42 chrVIII 562450 . T A 17.12 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=3.4897;MLEAC=1;MLEAF=0.500;MQ=24.89;MQ0=0;MQRankSum=1.203;QD=1.90;ReadPosRankSum=-0.573;SB=0.178 GT:AD:DP:GQ:PL 0/1:3,6:9:19:47,0,19 chrX 15923 . C G 174.03 filter AC=2;AF=1.00;AN=2;DP=454;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.39;MQ0=440;QD=0.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,448:454:24:207,24,0 chrX 16145 . G A 118.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.985;DP=442;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.62;MQ0=326;MQRankSum=-1.239;QD=0.27;ReadPosRankSum=1.516;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:325,114:442:99:148,0,841 chrX 16179 . C A 442.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.450;DP=493;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=1;MLEAF=0.500;MQ=13.89;MQ0=219;MQRankSum=2.001;QD=0.90;ReadPosRankSum=0.956;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:371,121:493:99:472,0,1775 chrX 16302 . G A 198.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.170;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=1;MLEAF=0.500;MQ=9.08;MQ0=245;MQRankSum=0.266;QD=0.62;ReadPosRankSum=0.561;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:167,149:317:99:228,0,180 chrX 18559 . A G 554 filter AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=12.96;MQ0=165;QD=2.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,187:194:63:587,63,0 chrX 18632 . T C 1508.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.867;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=48.8024;MLEAC=1;MLEAF=0.500;MQ=25.09;MQ0=104;MQRankSum=4.274;QD=5.09;ReadPosRankSum=1.288;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:161,135:296:99:1538,0,1865 chrX 18717 . G C 2026 filter AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.67;MQ0=175;QD=8.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:2059,219,0 chrX 19291 . C G 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.03;MQ0=112;QD=0.19;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:112,7:119:6:54,6,0 chrX 19294 . A G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.15;MQ0=108;QD=0.17;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:108,7:115:6:51,6,0 chrX 19296 . C T 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.12;MQ0=109;QD=0.22;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:108,7:116:6:57,6,0 chrX 19300 . T A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.12;MQ0=109;QD=0.22;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:108,7:116:6:57,6,0 chrX 19302 . C G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.06;MQ0=111;QD=0.20;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:111,7:118:6:55,6,0 chrX 19303 . T C 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.03;MQ0=112;QD=0.19;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:112,7:119:6:54,6,0 chrX 19309 . G A 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.15;MQ0=108;QD=0.20;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:108,7:115:6:54,6,0 chrX 19310 . C T 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.09;MQ0=110;QD=0.21;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:109,7:117:6:56,6,0 chrX 19398 . G C 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.97;MQ0=114;QD=0.16;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:114,46:160:6:57,6,0 chrX 19404 . C A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=39.7118;MLEAC=2;MLEAF=1.00;MQ=16.07;MQ0=112;QD=0.16;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:110,48:158:6:57,6,0 chrX 19405 . C A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=39.7118;MLEAC=2;MLEAF=1.00;MQ=16.07;MQ0=112;QD=0.16;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:112,46:158:6:57,6,0 chrX 19407 . A T 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=39.7118;MLEAC=2;MLEAF=1.00;MQ=15.97;MQ0=114;QD=0.17;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:114,46:160:6:59,6,0 chrX 19431 . T C 151.06 filter AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.97;MQ0=113;QD=0.94;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:109,48:160:21:184,21,0 chrX 19436 . G T 200.03 filter AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=15.86;MQ0=110;QD=1.30;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:107,46:154:24:233,24,0 chrX 19592 . T C 1185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=5.502;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;MQRankSum=-1.439;QD=16.69;ReadPosRankSum=1.683;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1218,132,0 chrX 19688 . G A 762 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=24.65;MQ0=28;QD=10.03;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:10,66:76:87:795,87,0 chrX 19712 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.89;MQ0=38;QD=0.41;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:28,29:58:6:55,6,0 chrX 19838 . C T 173.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.111;DP=130;Dels=0.00;FS=209.195;HaplotypeScore=5.7544;MLEAC=1;MLEAF=0.500;MQ=23.32;MQ0=42;MQRankSum=-2.376;QD=1.33;ReadPosRankSum=0.913;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:89,40:130:99:203,0,1060 chrX 20107 . A T 5947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.004;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=1.718;QD=24.68;ReadPosRankSum=1.281;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5947,625,0 chrX 20221 . C G 6640.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=11.5187;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=22.59;SB=-3.672e+03 GT:AD:DP:GQ:PL 1/1:0,291:294:99:6640,726,0 chrX 20525 . C T 2591 filter AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.2460;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=56;QD=12.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:2624,297,0 chrX 20616 . G A 1682 filter AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=19.16;MQ0=140;QD=7.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:45,185:230:99:1715,180,0 chrX 20867 . G A 108.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.715;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=18.01;MQ0=132;MQRankSum=1.021;QD=0.46;ReadPosRankSum=0.449;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:209,23:233:99:138,0,1339 chrX 21121 . A G 1732.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.289;DP=191;Dels=0.00;FS=2.857;HaplotypeScore=12.6422;MLEAC=1;MLEAF=0.500;MQ=44.45;MQ0=2;MQRankSum=-1.460;QD=9.07;ReadPosRankSum=0.959;SB=-5.500e+02 GT:AD:DP:GQ:PL 0/1:86,102:191:99:1762,0,1339 chrX 21456 . C T 5204.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.1072;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=26.42;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:5204,538,0 chrX 21542 . C T 1944.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.298;DP=186;Dels=0.00;FS=16.116;HaplotypeScore=15.3593;MLEAC=1;MLEAF=0.500;MQ=55.09;MQ0=0;MQRankSum=6.986;QD=10.45;ReadPosRankSum=-1.206;SB=-1.039e+03 GT:AD:DP:GQ:PL 0/1:84,101:186:99:1974,0,1464 chrX 21662 . T C 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=125;Dels=0.00;FS=2.982;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=2.273;QD=23.31;ReadPosRankSum=2.174;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2947,310,0 chrX 21753 . T G 2618 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=22.96;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2651,288,0 chrX 21904 . T C 1844 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=31.13;MQ0=0;QD=21.44;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1877,207,0 chrX 21910 . G A 1802 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.98;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1835,198,0 chrX 21913 . C T 1727 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=20.08;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1760,192,0 chrX 21924 . A G 1736 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=20.67;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1769,195,0 chrX 21926 . A C 1647 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=20.33;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1680,183,0 chrX 21939 . C T 1657 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=0;QD=17.63;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1690,180,0 chrX 21951 . T A 1739 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;QD=15.95;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1772,186,0 chrX 21962 . T A 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=4.500;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;MQRankSum=-1.648;QD=17.05;ReadPosRankSum=1.704;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2147,228,0 chrX 21977 . G A 1924 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=41.51;MQ0=0;QD=16.44;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1957,207,0 chrX 21978 . C A 1923 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.5769;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;QD=16.30;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1956,207,0 chrX 22056 . T G 1670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.45;MQ0=0;MQRankSum=0.990;QD=14.78;ReadPosRankSum=1.701;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:1703,186,0 chrX 22066 . T C 1643 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.81;MQ0=0;QD=13.81;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1676,186,0 chrX 22072 . G A 1478 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;QD=12.53;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1511,162,0 chrX 22089 . C T 877 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.90;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:910,99,0 chrX 22092 . C T 928 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=8.14;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:961,105,0 chrX 22096 . G A 933 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=8.41;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:966,105,0 chrX 22109 . A G 863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=113;Dels=0.00;FS=20.633;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=29.42;MQ0=0;MQRankSum=1.313;QD=7.64;ReadPosRankSum=2.938;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:3,110:113:99:896,102,0 chrX 22119 . A T 922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=131;Dels=0.00;FS=6.859;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=0;MQRankSum=1.626;QD=7.04;ReadPosRankSum=1.679;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:955,105,0 chrX 22140 . T C 1545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.397;DP=142;Dels=0.00;FS=2.375;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.32;MQ0=0;MQRankSum=-2.509;QD=10.88;ReadPosRankSum=3.385;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:4,138:142:99:1578,174,0 chrX 22205 . G T 3741.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=24.45;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3741,393,0 chrX 22235 . T A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2838;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=22.53;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3762,394,0 chrX 22261 . A C 4315.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=22.47;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4315,474,0 chrX 22527 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.59;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3250,366,0 chrX 22914 . T C 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.9057;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.592;QD=23.40;ReadPosRankSum=1.676;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2935,318,0 chrX 23081 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.41;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3264,345,0 chrX 23258 . A C 4764.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=20.3920;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.31;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4764,513,0 chrX 23330 . C A 4873.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=16.5856;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.09;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4873,528,0 chrX 23550 . A C 3631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=164;Dels=0.00;FS=2.984;HaplotypeScore=12.6253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.936;QD=22.14;ReadPosRankSum=2.420;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3631,399,0 chrX 23837 . A C 2779 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.8634;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.35;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2812,306,0 chrX 23957 . A T 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=111;Dels=0.00;FS=3.010;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.449;QD=22.52;ReadPosRankSum=1.701;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2533,267,0 chrX 24002 . A G 2505 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2538,273,0 chrX 24461 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=22.78;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3085,324,0 chrX 24470 . G A 2885 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=20.46;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2918,306,0 chrX 24521 . A G 4150.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=20.54;SB=-2.775e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4150,444,0 chrX 24527 . G A 4218.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;QD=19.62;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4218,445,0 chrX 24539 . A G 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=214;Dels=0.00;FS=3.157;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=0.419;QD=18.83;ReadPosRankSum=1.699;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:1,210:214:99:4030,444,0 chrX 24638 . G A 3534.01 SnpCluster AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.5031;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=21.29;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3534,372,0 chrX 24640 . T C 3272.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=160;Dels=0.00;FS=2.670;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.873;QD=20.45;ReadPosRankSum=2.419;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3272,360,0 chrX 24647 . T A 3163 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;MQRankSum=-2.062;QD=19.17;ReadPosRankSum=2.301;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3196,345,0 chrX 24658 . C A 3081 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.9757;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=19.50;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3114,324,0 chrX 24731 . A G 4498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=1.094;QD=22.27;ReadPosRankSum=1.698;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4498,498,0 chrX 24788 . A G 4096.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.7548;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.45;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4096,447,0 chrX 25259 . C T 4637.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4637,481,0 chrX 25563 . A G 4453.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.72;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4453,483,0 chrX 25674 . T A 3666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.394;DP=185;Dels=0.00;FS=8.299;HaplotypeScore=9.3045;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=-0.420;QD=19.82;ReadPosRankSum=3.252;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:4,181:185:99:3666,382,0 chrX 25718 . A G 2714 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=178;Dels=0.00;FS=13.181;HaplotypeScore=6.8975;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;MQRankSum=-1.517;QD=15.25;ReadPosRankSum=2.926;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:3,174:178:99:2747,294,0 chrX 25720 . C T 2796 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;MQRankSum=-0.031;QD=16.35;ReadPosRankSum=1.568;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:2829,288,0 chrX 25724 . A G 2531 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=179;Dels=0.00;FS=4.375;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;MQRankSum=-0.253;QD=14.14;ReadPosRankSum=1.713;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:2564,276,0 chrX 25731 . C T 2608 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=14.90;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2641,282,0 chrX 26567 . G T 2368 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.45;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2401,252,0 chrX 26631 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5084;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.28;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2618,276,0 chrX 26661 . T C 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.996;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.300;QD=19.15;ReadPosRankSum=1.680;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2618,282,0 chrX 26666 . G T 2420 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=17.66;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2453,264,0 chrX 26984 . T A 3485.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.6333;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3485,366,0 chrX 27252 . C A 4125.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.3225;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.00;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4125,436,0 chrX 27298 . T C 3508.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.78;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3508,378,0 chrX 27330 . G A 2851 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.1880;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.81;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2884,309,0 chrX 27441 . C T 4475.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4475,483,0 chrX 27663 . G A 4790.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4790,502,0 chrX 27780 . T C 5367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=247;Dels=0.00;FS=4.069;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.587;QD=21.73;ReadPosRankSum=1.704;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:1,244:247:99:5367,600,0 chrX 27906 . C T 5325.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=25.00;SB=-2.991e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5325,559,0 chrX 27942 . C T 5293.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.32;SB=-2.935e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:5293,550,0 chrX 28032 . T C 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.211;DP=177;Dels=0.00;FS=5.198;HaplotypeScore=15.7969;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=1.573;QD=22.05;ReadPosRankSum=3.251;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:4,172:177:99:3902,432,0 chrX 28147 . G C 4678.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=22.17;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4678,513,0 chrX 28161 . A G 4263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;MQRankSum=0.240;QD=21.00;ReadPosRankSum=1.715;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4263,462,0 chrX 28178 . C T 4555.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=22.55;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4555,475,0 chrX 28257 . A C 5094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=0.266;QD=23.58;ReadPosRankSum=1.684;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:5094,555,0 chrX 28302 . G C 4910.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.0717;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=22.42;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4910,549,0 chrX 28318 . G A 4355.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.2512;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=23.29;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4355,459,0 chrX 28329 . C T 3793.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=23.13;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3793,402,0 chrX 28380 . C T 2424 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;QD=19.39;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2457,258,0 chrX 28401 . G A 2159 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=20.96;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2192,231,0 chrX 28422 . T C 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.195;DP=135;Dels=0.00;FS=7.232;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;MQRankSum=-0.282;QD=21.09;ReadPosRankSum=2.413;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2880,315,0 chrX 28461 . A G 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=141;Dels=0.00;FS=2.717;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;MQRankSum=0.706;QD=22.65;ReadPosRankSum=2.380;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3227,351,0 chrX 28530 . G A 2086 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;QD=22.67;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2119,228,0 chrX 28548 . C T 1357 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.9628;MLEAC=2;MLEAF=1.00;MQ=35.04;MQ0=0;QD=20.25;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,62:67:99:1390,150,0 chrX 28560 . G A 1038 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;QD=19.58;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1071,114,0 chrX 28569 . G A 818 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=19.95;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:90:851,90,0 chrX 28578 . C G 743 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=20.08;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:84:776,84,0 chrX 28581 . C T 718 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=18.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:81:751,81,0 chrX 28584 . A G 711 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=17.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:81:744,81,0 chrX 28588 . A T 679 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;MQRankSum=0.443;QD=15.79;ReadPosRankSum=1.652;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,42:43:75:712,75,0 chrX 28593 . T C 571 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=14.27;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:66:604,66,0 chrX 28597 . A G 472 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;MQRankSum=-0.675;QD=13.49;ReadPosRankSum=2.310;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:2,33:35:54:505,54,0 chrX 28598 . C T 473 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=14.33;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:54:506,54,0 chrX 28599 . C T 483 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=14.64;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:54:516,54,0 chrX 28605 . A G 425 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=12.88;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:51:458,51,0 chrX 28608 . C T 340 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=14.17;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:39:373,39,0 chrX 28609 . A T 341 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=14.21;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:39:374,39,0 chrX 28610 . C T 335 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=13.96;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:39:368,39,0 chrX 28614 . C T 333 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=13.87;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:39:366,39,0 chrX 28616 . A G 324 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=13.50;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:39:357,39,0 chrX 28618 . C A 350 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=14.58;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:39:383,39,0 chrX 28624 . T G 362 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=7.54;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:42:395,42,0 chrX 28625 . C A 381 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=7.94;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:42:414,42,0 chrX 28634 . T C 362 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=6.24;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:42:395,42,0 chrX 28635 . T A 369 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=6.36;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:42:402,42,0 chrX 28645 . T C 234 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;QD=4.42;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,53:53:30:267,30,0 chrX 29240 . C T 3277.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=25.80;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3277,348,0 chrX 29766 . G A 3032 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=24.06;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3065,330,0 chrX 29954 . G A 2430 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.92;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2463,264,0 chrX 29957 . G A 2304 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.74;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2337,246,0 chrX 30542 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.46;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3269,351,0 chrX 30891 . T A 2724 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.4239;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.15;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2757,285,0 chrX 31493 . C G 2926 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.5181;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.38;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2959,324,0 chrX 31539 . C G 4024.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=24.84;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,159:162:99:4024,432,0 chrX 32235 . A C 5761.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=12.8429;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.51;SB=-3.097e+03 GT:AD:DP:GQ:PL 1/1:0,242:245:99:5761,622,0 chrX 33178 . A G 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.720;QD=19.44;ReadPosRankSum=1.640;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2230,252,0 chrX 33525 . C G 1646 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1679,186,0 chrX 33675 . G A 2354 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.7007;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.31;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2387,252,0 chrX 34369 . T C 6034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=14.8478;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.299;QD=23.03;ReadPosRankSum=1.679;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,260:262:99:6034,669,0 chrX 34461 . T C 6519.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=8.7961;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.62;SB=-3.637e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:6519,700,0 chrX 34488 . A G 5649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.730;DP=273;Dels=0.00;FS=7.956;HaplotypeScore=14.4039;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.907;QD=20.69;ReadPosRankSum=3.569;SB=-2.903e+03 GT:AD:DP:GQ:PL 1/1:5,268:273:99:5649,610,0 chrX 35239 . G A 5777.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=15.6594;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.87;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:5777,618,0 chrX 36159 . C T 3497.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.27;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3497,364,0 chrX 36217 . C T 2897 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.0666;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.28;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2930,318,0 chrX 36357 . A G 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=3.733;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.291;QD=18.85;ReadPosRankSum=1.707;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2615,297,0 chrX 36391 . G A 712 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=73.6333;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=4.84;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:78:745,78,0 chrX 36445 . G A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=23.8868;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.16;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,142:146:99:3405,366,0 chrX 36478 . G A 5114.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.1817;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.32;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:5114,552,0 chrX 36583 . A G 7397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=301;Dels=0.00;FS=9.837;HaplotypeScore=21.3027;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.217;QD=24.57;ReadPosRankSum=2.360;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:2,298:301:99:7397,799,0 chrX 36777 . G A 8858.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.437;DP=439;Dels=0.00;FS=3.550;HaplotypeScore=33.3260;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.340;QD=20.18;ReadPosRankSum=-0.364;SB=-5.069e+03 GT:AD:DP:GQ:PL 1/1:1,436:439:99:8858,968,0 chrX 36818 . C G 11442.01 filter AC=2;AF=1.00;AN=2;DP=491;Dels=0.00;FS=0.000;HaplotypeScore=32.6547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.30;SB=-6.202e+03 GT:AD:DP:GQ:PL 1/1:0,488:491:99:11442,1243,0 chrX 36870 . G A 11956.01 filter AC=2;AF=1.00;AN=2;DP=504;Dels=0.00;FS=0.000;HaplotypeScore=41.5577;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.72;SB=-6.533e+03 GT:AD:DP:GQ:PL 1/1:0,503:504:99:11956,1250,0 chrX 36993 . T C 10009.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=450;Dels=0.00;FS=3.426;HaplotypeScore=33.7903;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.745;QD=22.24;ReadPosRankSum=1.717;SB=-5.325e+03 GT:AD:DP:GQ:PL 1/1:1,448:450:99:10009,1119,0 chrX 37127 . T C 7580.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=405;Dels=0.00;FS=6.570;HaplotypeScore=20.1086;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.832;QD=18.72;ReadPosRankSum=1.723;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:1,403:405:99:7580,814,0 chrX 37922 . G A 4665.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=23.56;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4665,493,0 chrX 37925 . G C 4445.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=22.45;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4445,474,0 chrX 37938 . T G 4266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.4654;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=0.017;QD=20.91;ReadPosRankSum=1.664;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4266,456,0 chrX 38092 . A G 4915.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=220;Dels=0.00;FS=2.573;HaplotypeScore=9.7200;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.665;QD=22.34;ReadPosRankSum=2.931;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:3,216:220:99:4915,540,0 chrX 38691 . A G 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.410;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.732;QD=23.99;ReadPosRankSum=1.704;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3056,336,0 chrX 39476 . C T 3054 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.62;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3087,321,0 chrX 39598 . A G 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=3.391;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.040;QD=24.15;ReadPosRankSum=1.679;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3221,345,0 chrX 39814 . C T 4061.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.1328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.54;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4061,421,0 chrX 40239 . T C 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=130;Dels=0.00;FS=2.752;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.239;QD=22.58;ReadPosRankSum=2.412;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2969,324,0 chrX 41107 . T C 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=4.102;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.347;QD=22.08;ReadPosRankSum=1.711;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3577,387,0 chrX 41200 . G T 2543 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2576,270,0 chrX 41487 . G C 3765.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.93;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3765,408,0 chrX 41577 . T C 3937.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.16;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3937,429,0 chrX 41794 . G A 2340 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=20.35;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2373,249,0 chrX 41803 . A G 2318 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=21.07;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2351,255,0 chrX 42451 . G A 3142 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.17;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3175,336,0 chrX 42655 . A G 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=3.918;HaplotypeScore=8.2661;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.654;QD=23.22;ReadPosRankSum=1.699;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2494,276,0 chrX 42718 . G A 2768 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.4999;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.32;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2801,294,0 chrX 42736 . T C 2495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=123;Dels=0.00;FS=6.057;HaplotypeScore=10.3843;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-0.287;QD=20.28;ReadPosRankSum=2.861;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2528,273,0 chrX 42958 . A G 4470.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.04;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4470,498,0 chrX 43189 . T C 4358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=186;Dels=0.00;FS=9.174;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.277;QD=23.43;ReadPosRankSum=2.962;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:3,182:186:99:4358,471,0 chrX 43261 . G C 3323.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.45;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3323,375,0 chrX 43579 . C T 2543 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.12;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2576,270,0 chrX 43594 . A C 2666 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.79;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2699,291,0 chrX 43681 . G A 2804 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.6838;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.61;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2837,300,0 chrX 43722 . A G 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=110;Dels=0.00;FS=7.580;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.265;QD=22.20;ReadPosRankSum=2.358;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:2,106:110:99:2475,270,0 chrX 43846 . C T 2416 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.79;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2449,258,0 chrX 44566 . C T 3871.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3871,414,0 chrX 44863 . G A 4842.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.1708;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=26.32;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4842,514,0 chrX 44980 . T C 3021 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.97;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3054,333,0 chrX 45138 . A G 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.692;DP=135;Dels=0.00;FS=2.589;HaplotypeScore=8.0820;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.474;QD=22.69;ReadPosRankSum=2.873;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:3,131:135:99:3096,336,0 chrX 45217 . C T 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.943;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.2310;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.622;QD=23.29;ReadPosRankSum=0.767;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3727,383,0 chrX 45703 . A T 2673 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2706,294,0 chrX 46191 . T G 4019.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.66;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4019,441,0 chrX 47473 . T C 2398 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.94;MQ0=0;QD=23.28;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2431,264,0 chrX 48186 . G A 3189 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.51;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3222,342,0 chrX 48515 . G C 3675.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3675,399,0 chrX 48799 . G A 4795.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4795,505,0 chrX 49592 . T G 4275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=177;Dels=0.00;FS=2.855;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.668;QD=24.15;ReadPosRankSum=2.366;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:4275,462,0 chrX 49698 . G A 5354.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=19.4005;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5354,559,0 chrX 49768 . T C 5100.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.0860;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.97;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5100,552,0 chrX 50124 . C T 4138.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=25.23;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4138,430,0 chrX 50403 . T A 2957 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.7651;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.25;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2990,312,0 chrX 50434 . A G 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=131;Dels=0.00;FS=5.816;HaplotypeScore=7.8094;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=-1.194;QD=20.24;ReadPosRankSum=2.915;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:3,127:131:99:2685,297,0 chrX 50483 . G A 3371.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.41;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3371,352,0 chrX 50613 . A C 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=146;Dels=0.00;FS=4.320;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.403;QD=22.66;ReadPosRankSum=1.685;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3308,354,0 chrX 51007 . C T 2876 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.83;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2909,309,0 chrX 51154 . C T 2993 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3026,324,0 chrX 52434 . C T 2400 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.00;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2433,255,0 chrX 52561 . C T 1856 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1889,198,0 chrX 52757 . C T 1284 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1317,138,0 chrX 52825 . C T 1743 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1776,183,0 chrX 52870 . T A 1885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.7918;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.250;QD=23.56;ReadPosRankSum=1.688;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1918,204,0 chrX 52932 . T C 1925 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.77;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1958,213,0 chrX 53177 . G A 2538 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=16.4963;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.98;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2571,276,0 chrX 53312 . A G 4022.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4022,444,0 chrX 53473 . C T 4525.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8710;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4525,469,0 chrX 53526 . T C 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=173;Dels=0.00;FS=3.087;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.334;QD=23.24;ReadPosRankSum=1.712;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:4020,447,0 chrX 53592 . T C 4205.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4205,465,0 chrX 53771 . G A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.0888;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.96;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3467,363,0 chrX 53842 . A G 3942.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3942,435,0 chrX 53880 . A G 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.685;QD=23.95;ReadPosRankSum=1.685;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3544,393,0 chrX 54177 . A G 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=147;Dels=0.00;FS=3.454;HaplotypeScore=12.9642;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.722;QD=23.53;ReadPosRankSum=1.708;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,143:147:99:3459,381,0 chrX 54420 . T C 3826.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.0467;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.74;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3826,417,0 chrX 54825 . G A 3844.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.80;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3844,405,0 chrX 54941 . T C 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.877;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.841;QD=23.68;ReadPosRankSum=1.699;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2543,276,0 chrX 55149 . T C 3080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=128;Dels=0.00;FS=2.579;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.579;QD=24.06;ReadPosRankSum=2.913;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:3113,336,0 chrX 56320 . G A 1241 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.68;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1274,135,0 chrX 57044 . T C 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=139;Dels=0.00;FS=2.968;HaplotypeScore=10.4445;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.436;QD=21.13;ReadPosRankSum=2.378;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2970,321,0 chrX 57144 . T C 3320.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.9879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3320,360,0 chrX 58202 . C A 3963.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.45;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3963,420,0 chrX 58385 . G A 4084.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.9346;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=22.69;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4084,441,0 chrX 58400 . G T 3783.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=20.23;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3783,393,0 chrX 58414 . T C 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=179;Dels=0.00;FS=2.568;HaplotypeScore=9.2038;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-0.242;QD=17.74;ReadPosRankSum=2.961;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:3208,351,0 chrX 59202 . A G 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=3.663;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;MQRankSum=-0.282;QD=23.79;ReadPosRankSum=1.692;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2079,225,0 chrX 59223 . T C 1471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=3.266;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;MQRankSum=0.544;QD=21.01;ReadPosRankSum=1.633;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1504,165,0 chrX 59484 . A G 1583 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;QD=22.30;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1616,174,0 chrX 59496 . G A 1507 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=42.33;MQ0=0;QD=21.23;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1540,162,0 chrX 59557 . T A 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;MQRankSum=-1.459;QD=24.11;ReadPosRankSum=1.705;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3095,321,0 chrX 59636 . G T 1319 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.49;MQ0=0;QD=9.99;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:1352,147,0 chrX 59637 . G A 1368 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.51;MQ0=0;QD=10.44;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1401,150,0 chrX 59642 . G A 1343 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.76;MQ0=0;QD=10.10;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1376,144,0 chrX 59648 . T A 1413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=137;Dels=0.00;FS=3.733;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=0;MQRankSum=-1.732;QD=10.31;ReadPosRankSum=-0.316;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:1446,132,0 chrX 59662 . A G 1582 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.13;MQ0=0;QD=11.55;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1615,177,0 chrX 59683 . A G 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=133;Dels=0.00;FS=6.101;HaplotypeScore=111.1343;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;MQRankSum=-0.341;QD=12.93;ReadPosRankSum=2.947;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:1753,189,0 chrX 59791 . A C 4529.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=22.99;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4529,483,0 chrX 59804 . C T 4548.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=22.51;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4548,475,0 chrX 61155 . C T 3767.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3767,405,0 chrX 61680 . C T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.54;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3656,382,0 chrX 61814 . G A 4260.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.9863;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=24.62;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4260,448,0 chrX 61926 . T A 5029.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.72;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5029,535,0 chrX 61974 . A T 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.1205;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-0.922;QD=21.47;ReadPosRankSum=1.698;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4359,460,0 chrX 61995 . C T 4309.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=21.76;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4309,451,0 chrX 62016 . A G 3986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=199;Dels=0.01;FS=2.911;HaplotypeScore=8.7805;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-1.864;QD=20.03;ReadPosRankSum=2.387;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:3986,426,0 chrX 62044 . A T 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.8108;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-0.898;QD=18.00;ReadPosRankSum=1.678;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:3456,375,0 chrX 62065 . T C 3734.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.4875;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.40;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3734,405,0 chrX 62571 . A G 5462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.277;DP=252;Dels=0.00;FS=3.026;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.932;QD=21.67;ReadPosRankSum=2.085;SB=-3.143e+03 GT:AD:DP:GQ:PL 1/1:2,249:252:99:5462,589,0 chrX 62857 . A G 5255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=215;Dels=0.00;FS=4.093;HaplotypeScore=13.7425;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.309;QD=24.44;ReadPosRankSum=1.700;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:1,212:215:99:5255,568,0 chrX 63597 . C T 3865.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.57;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3865,403,0 chrX 64516 . A G 4358.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4358,474,0 chrX 64693 . T C 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=165;Dels=0.00;FS=3.091;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.861;QD=21.10;ReadPosRankSum=1.626;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3482,378,0 chrX 64900 . T C 4937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=210;Dels=0.00;FS=2.881;HaplotypeScore=10.9972;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.110;QD=23.51;ReadPosRankSum=2.414;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:4937,546,0 chrX 65322 . G A 3655.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=23.89;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3655,396,0 chrX 65469 . G A 3434.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.52;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3434,360,0 chrX 65559 . G A 3122 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=21.09;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3155,330,0 chrX 65562 . C G 2734 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=18.11;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:2767,309,0 chrX 65752 . A G 3606.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.04;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3606,396,0 chrX 65790 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=151;Dels=0.00;FS=5.959;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=1.114;QD=23.49;ReadPosRankSum=2.913;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:3,147:151:99:3547,384,0 chrX 66007 . G A 3569.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.5473;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.33;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3569,378,0 chrX 66315 . G A 3626.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.66;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3626,376,0 chrX 66318 . T A 3539.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=22.69;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3539,361,0 chrX 66352 . G C 3166 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.97;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,144:151:99:3199,345,0 chrX 66411 . A G 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.315;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.367;QD=24.67;ReadPosRankSum=1.654;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3281,357,0 chrX 66858 . G A 3711.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6097;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.91;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3711,382,0 chrX 67074 . T A 3957.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.5087;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.43;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3957,418,0 chrX 67874 . C A 3720.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.16;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3720,402,0 chrX 68438 . T C 5771.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.20;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:5771,636,0 chrX 69580 . A G 4679.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.3300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4679,507,0 chrX 69760 . G A 4257.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.7532;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4257,468,0 chrX 69814 . T C 4044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=188;Dels=0.00;FS=7.787;HaplotypeScore=13.5769;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.294;QD=21.51;ReadPosRankSum=2.384;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4044,453,0 chrX 70147 . G A 3990.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3990,412,0 chrX 70321 . G A 3506.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=20.0723;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3506,369,0 chrX 70441 . G A 3289.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3257;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.36;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3289,337,0 chrX 70992 . G T 1618 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.04;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=22.47;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1651,171,0 chrX 71179 . G A 2240 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.96;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2273,240,0 chrX 71182 . G A 2122 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=20.80;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2155,234,0 chrX 71276 . G A 192.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=92.6529;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=1.52;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:27:225,27,0 chrX 71578 . C T 4544.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.79;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4544,478,0 chrX 71728 . C T 2735 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2768,285,0 chrX 71767 . T C 2918 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.94;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2951,321,0 chrX 71803 . G A 3634.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.39;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3634,376,0 chrX 71920 . T C 3390.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3390,366,0 chrX 72245 . T C 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.1681;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.594;QD=24.61;ReadPosRankSum=1.707;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3421,366,0 chrX 72544 . G C 2677 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.08;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2710,291,0 chrX 72547 . A G 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-1.132;QD=20.58;ReadPosRankSum=1.678;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2667,288,0 chrX 73193 . T C 4105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.316;QD=23.46;ReadPosRankSum=1.712;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4105,447,0 chrX 73368 . G A 5033.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.67;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:5033,517,0 chrX 73391 . T C 4377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=192;Dels=0.00;FS=3.339;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.660;QD=22.80;ReadPosRankSum=1.678;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4377,474,0 chrX 73522 . G T 3338.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=15.1282;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.35;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3338,360,0 chrX 73608 . T C 4038.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.18;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4038,435,0 chrX 73745 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.60;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3559,372,0 chrX 73879 . A G 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.674;DP=135;Dels=0.00;FS=11.897;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.352;QD=24.27;ReadPosRankSum=3.780;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:5,129:135:99:3277,348,0 chrX 73990 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.75;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2943,309,0 chrX 74038 . G A 3606.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3606,378,0 chrX 74077 . T C 4155.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.2433;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4155,444,0 chrX 74530 . G A 4423.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=17.0426;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.51;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:4423,466,0 chrX 74857 . T G 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=142;Dels=0.00;FS=2.684;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.026;QD=22.07;ReadPosRankSum=2.415;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3167,354,0 chrX 74905 . G A 3617.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=20.21;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:3617,376,0 chrX 74906 . T A 3636.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=20.66;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3636,376,0 chrX 75337 . A T 3595.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=-0.142;QD=22.06;ReadPosRankSum=1.710;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3595,378,0 chrX 75340 . C T 3525.01 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=22.74;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3525,367,0 chrX 75343 . G C 3376.01 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=22.36;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3376,360,0 chrX 75366 . C G 3160 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=21.35;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3193,354,0 chrX 75669 . C T 2954 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=21.25;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2987,309,0 chrX 75672 . G A 2789 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=21.29;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2822,294,0 chrX 75674 . C T 2704 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=20.80;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2737,294,0 chrX 75699 . G A 2367 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=18.64;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2400,264,0 chrX 76062 . A G 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=3.846;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.974;QD=21.24;ReadPosRankSum=1.689;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3398,375,0 chrX 76073 . A G 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=153;Dels=0.00;FS=7.748;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-0.394;QD=20.41;ReadPosRankSum=2.289;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3156,336,0 chrX 76135 . C T 3613.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.77;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3613,376,0 chrX 76178 . G C 4674.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.40;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4674,501,0 chrX 77140 . T G 4161.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.3670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4161,453,0 chrX 77203 . A G 3110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=141;Dels=0.00;FS=3.577;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.657;QD=22.06;ReadPosRankSum=1.707;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:3143,345,0 chrX 79603 . C G 3583.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.8985;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3583,393,0 chrX 79812 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.01;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4034,418,0 chrX 80008 . A T 1686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=4.861;HaplotypeScore=8.7855;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.530;QD=17.03;ReadPosRankSum=-0.672;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1719,192,0 chrX 80055 . T A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.63;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3308,351,0 chrX 80094 . A T 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=140;Dels=0.00;FS=3.332;HaplotypeScore=11.2697;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.668;QD=25.62;ReadPosRankSum=1.707;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3587,373,0 chrX 80208 . A G 4074.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.6590;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.55;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4074,450,0 chrX 80986 . G C 4612.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.4771;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.29;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4612,516,0 chrX 81228 . C T 5344.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.4549;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.13;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,227:231:99:5344,556,0 chrX 81387 . C A 4277.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=21.0828;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.93;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4277,448,0 chrX 81511 . G C 4013.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.3462;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.06;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,170:174:99:4013,432,0 chrX 82254 . C A 3638.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.09;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3638,381,0 chrX 82556 . G A 3767.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.11;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3767,394,0 chrX 83621 . G A 6991.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=15.9796;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.15;SB=-4.030e+03 GT:AD:DP:GQ:PL 1/1:0,300:302:99:6991,736,0 chrX 83690 . T A 5653.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=18.2879;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.94;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:5653,610,0 chrX 83747 . A T 4435.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.0249;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.10;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4435,475,0 chrX 83804 . C T 5278.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.5464;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.44;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5278,553,0 chrX 83886 . A G 127.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.369;DP=185;Dels=0.01;FS=0.000;HaplotypeScore=174.0629;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-0.639;QD=0.69;ReadPosRankSum=2.100;SB=-5.288e+01 GT:AD:DP:GQ:PL 1/1:2,12:184:18:160,18,0 chrX 83937 . T A 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=194;Dels=0.02;FS=0.000;HaplotypeScore=21.4505;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.250;QD=15.78;ReadPosRankSum=1.714;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3095,321,0 chrX 84655 . T C 3598.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.31;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3598,387,0 chrX 84877 . C T 4405.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.0017;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.89;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4405,460,0 chrX 85087 . T C 6028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=12.0744;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.007;QD=24.02;ReadPosRankSum=1.704;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:6028,660,0 chrX 85575 . C T 2402 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0292;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2435,261,0 chrX 86190 . T C 3091 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.8133;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.62;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3124,354,0 chrX 86567 . G A 4124.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.04;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4124,436,0 chrX 86718 . C A 3532.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3532,375,0 chrX 86822 . G A 3829.01 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=24.86;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3829,394,0 chrX 86831 . A G 3602.01 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.9832;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=22.65;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3602,390,0 chrX 86832 . A G 3614.01 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.9385;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=22.73;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3614,393,0 chrX 86930 . A G 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.012;QD=21.38;ReadPosRankSum=1.709;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3219,354,0 chrX 87159 . C A 5091.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5091,541,0 chrX 88714 . T C 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.502;QD=24.47;ReadPosRankSum=1.657;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3377,378,0 chrX 90197 . G C 4054.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=23.30;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4054,438,0 chrX 92512 . G A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.8291;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.11;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3520,384,0 chrX 93007 . G A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.39;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3378,352,0 chrX 93121 . G T 3867.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.85;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3867,411,0 chrX 93142 . T C 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=4.314;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-1.026;QD=22.25;ReadPosRankSum=1.668;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3605,393,0 chrX 93515 . G A 3534.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.9817;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.37;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3534,390,0 chrX 93733 . C G 4419.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.55;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4419,477,0 chrX 93884 . A G 5455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=240;Dels=0.00;FS=3.450;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.022;QD=22.73;ReadPosRankSum=1.689;SB=-2.891e+03 GT:AD:DP:GQ:PL 1/1:1,238:240:99:5455,594,0 chrX 93931 . A T 5939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=269;Dels=0.00;FS=3.579;HaplotypeScore=15.0862;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-1.268;QD=22.08;ReadPosRankSum=1.642;SB=-3.298e+03 GT:AD:DP:GQ:PL 1/1:1,268:269:99:5939,622,0 chrX 94118 . T C 7222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=309;Dels=0.00;FS=2.922;HaplotypeScore=15.7076;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.463;QD=23.37;ReadPosRankSum=2.409;SB=-3.443e+03 GT:AD:DP:GQ:PL 1/1:2,303:309:99:7222,790,0 chrX 94183 . T C 5638.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.92;SB=-3.578e+03 GT:AD:DP:GQ:PL 1/1:0,283:283:99:5638,621,0 chrX 94198 . A G 6182.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=297;Dels=0.00;FS=6.214;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.493;QD=20.81;ReadPosRankSum=2.416;SB=-3.901e+03 GT:AD:DP:GQ:PL 1/1:2,294:297:99:6182,670,0 chrX 94327 . A G 9403.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=441;Dels=0.00;FS=12.630;HaplotypeScore=25.9401;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.984;QD=21.32;ReadPosRankSum=2.970;SB=-4.229e+03 GT:AD:DP:GQ:PL 1/1:3,433:441:99:9403,1047,0 chrX 95336 . G A 7396.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=12.8536;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.78;SB=-3.670e+03 GT:AD:DP:GQ:PL 1/1:0,309:311:99:7396,769,0 chrX 95406 . C T 6542.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=19.8358;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.45;SB=-2.913e+03 GT:AD:DP:GQ:PL 1/1:0,278:279:99:6542,685,0 chrX 96194 . C T 3557.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3557,370,0 chrX 96562 . C G 5360.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.51;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:5360,585,0 chrX 96683 . T C 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=4.409;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.130;QD=21.96;ReadPosRankSum=1.707;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:3108,336,0 chrX 96721 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.0656;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.86;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,154:158:99:3454,375,0 chrX 96890 . G T 2777 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=15.2381;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=20.27;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2810,294,0 chrX 96902 . A G 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=4.991;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-0.220;QD=18.58;ReadPosRankSum=1.683;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:2709,306,0 chrX 97368 . T C 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=172;Dels=0.00;FS=6.069;HaplotypeScore=7.5123;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.936;QD=22.46;ReadPosRankSum=2.948;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:3863,420,0 chrX 97478 . G A 3422.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.22;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3422,369,0 chrX 97550 . G A 3428.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.9466;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.97;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3428,363,0 chrX 98069 . C T 4128.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.4112;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.68;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4128,438,0 chrX 98106 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3267,342,0 chrX 98166 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3468,366,0 chrX 99116 . G C 3714.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.1101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3714,402,0 chrX 99365 . G A 1365 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.50;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1398,147,0 chrX 99941 . A G 5273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=239;Dels=0.00;FS=6.775;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-1.603;QD=22.06;ReadPosRankSum=2.429;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:2,233:239:99:5273,576,0 chrX 99962 . G A 5512.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=16.0990;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.87;SB=-3.157e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5512,577,0 chrX 100448 . G T 6058.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=9.7927;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.45;SB=-3.156e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:6058,637,0 chrX 101082 . A G 2365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.01;FS=3.795;HaplotypeScore=21.8617;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.023;QD=18.33;ReadPosRankSum=1.678;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2398,270,0 chrX 101365 . A T 4015.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.5118;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.13;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4015,435,0 chrX 102363 . C T 3445.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3445,358,0 chrX 103352 . A G 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=6.434;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.755;QD=25.06;ReadPosRankSum=2.388;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:3015,327,0 chrX 105883 . G T 4390.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4390,457,0 chrX 106111 . G C 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.066;DP=133;Dels=0.00;FS=3.849;HaplotypeScore=10.8134;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.833;QD=22.77;ReadPosRankSum=-1.573;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:3061,309,0 chrX 106893 . T C 2442 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.94;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2475,270,0 chrX 106919 . T G 2638 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.55;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2671,288,0 chrX 107239 . C T 4003.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.5970;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.26;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4003,418,0 chrX 107485 . C T 4559.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.3937;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.20;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4559,475,0 chrX 108019 . G A 4904.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4904,525,0 chrX 108143 . A G 4756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=204;Dels=0.00;FS=7.049;HaplotypeScore=18.0348;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.225;QD=23.31;ReadPosRankSum=2.413;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4756,519,0 chrX 108704 . G C 4065.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.71;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,174:179:99:4065,438,0 chrX 108855 . T A 5442.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=23.16;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5442,565,0 chrX 108954 . G T 3882.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.67;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3882,403,0 chrX 109974 . C T 2295 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.8321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.66;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2328,243,0 chrX 110890 . T C 3472.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.30;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3472,375,0 chrX 110925 . T C 3558.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6460;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.41;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3558,387,0 chrX 111089 . T G 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=145;Dels=0.00;FS=6.111;HaplotypeScore=13.5220;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.284;QD=19.28;ReadPosRankSum=2.880;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:3,139:145:99:2829,306,0 chrX 111445 . C T 3528.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.5415;MLEAC=2;MLEAF=1.00;MQ=60.66;MQ0=0;QD=23.84;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3528,369,0 chrX 111903 . C T 6788.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=24.96;SB=-3.746e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:6788,700,0 chrX 111945 . A G 6883.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=23.5057;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.33;SB=-3.708e+03 GT:AD:DP:GQ:PL 1/1:0,294:295:99:6883,739,0 chrX 112239 . A G 5083.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.32;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5083,561,0 chrX 112473 . T C 4610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=199;Dels=0.00;FS=2.857;HaplotypeScore=16.6058;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.403;QD=23.17;ReadPosRankSum=2.425;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4610,495,0 chrX 112673 . T C 5874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=259;Dels=0.00;FS=2.976;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.509;QD=22.68;ReadPosRankSum=2.431;SB=-3.086e+03 GT:AD:DP:GQ:PL 1/1:2,256:259:99:5874,642,0 chrX 113505 . G A 1205 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=14.88;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1238,132,0 chrX 113621 . C T 1836 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.16;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1869,192,0 chrX 113702 . C T 1421 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.56;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1454,153,0 chrX 113833 . T C 2495 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.2300;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.20;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2528,279,0 chrX 113997 . T G 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.322;QD=22.64;ReadPosRankSum=1.658;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3225,354,0 chrX 114582 . C T 3941.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=25.59;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3941,417,0 chrX 114631 . C T 3591.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.3071;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=23.63;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3591,375,0 chrX 114825 . T C 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.6087;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;MQRankSum=-0.022;QD=16.80;ReadPosRankSum=1.710;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2687,297,0 chrX 114831 . T G 2742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.978;DP=164;Dels=0.00;FS=10.399;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;MQRankSum=1.175;QD=16.72;ReadPosRankSum=4.057;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:6,156:164:99:2775,300,0 chrX 114873 . G T 2639 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=304.4501;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=0;QD=15.99;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2672,306,0 chrX 114874 . T C 2571 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=405.9334;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=0;QD=15.58;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2604,306,0 chrX 114907 . T C 835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=183;Dels=0.00;FS=2.777;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=0;MQRankSum=-2.168;QD=4.56;ReadPosRankSum=2.423;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:96:868,96,0 chrX 115531 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3266,351,0 chrX 116197 . A G 3787.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.28;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3787,426,0 chrX 116433 . C G 4175.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.8862;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4175,450,0 chrX 116910 . A G 2948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.573;QD=22.50;ReadPosRankSum=1.706;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2981,321,0 chrX 117004 . A G 2395 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2428,270,0 chrX 117184 . G C 3388.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.8047;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.73;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3388,366,0 chrX 117715 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.68;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3356,351,0 chrX 117792 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0763;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2878,300,0 chrX 117971 . G T 4833.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=16.0518;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.04;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4833,517,0 chrX 118772 . A G 4041.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.58;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4041,444,0 chrX 118904 . G T 3135 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=23.22;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3168,339,0 chrX 119045 . C T 1917 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=19.36;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1950,201,0 chrX 119064 . G T 1723 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.08;MQ0=0;QD=17.06;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1756,183,0 chrX 119092 . A C 1646 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.81;MQ0=0;QD=14.57;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1679,180,0 chrX 119095 . A C 1573 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.02;MQ0=0;QD=13.80;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1606,174,0 chrX 119101 . T C 1508 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;MQRankSum=0.193;QD=12.46;ReadPosRankSum=2.328;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:1541,165,0 chrX 119105 . A C 1442 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=29.77;MQ0=0;QD=11.82;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1475,162,0 chrX 119112 . C T 1698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.29;MQ0=0;MQRankSum=0.475;QD=13.69;ReadPosRankSum=1.313;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:1731,186,0 chrX 119236 . T A 3966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.4861;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-0.739;QD=24.18;ReadPosRankSum=1.711;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3966,423,0 chrX 119303 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.2855;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=25.18;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3273,339,0 chrX 119345 . A G 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=156;Dels=0.00;FS=5.967;HaplotypeScore=5.4218;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;MQRankSum=1.690;QD=22.29;ReadPosRankSum=2.916;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:3477,375,0 chrX 119720 . A C 2907 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.9883;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.33;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2940,321,0 chrX 119936 . C T 2967 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.3567;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.27;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3000,315,0 chrX 120106 . A T 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=153;Dels=0.00;FS=3.277;HaplotypeScore=11.1461;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.562;QD=22.07;ReadPosRankSum=1.709;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3376,360,0 chrX 120196 . G T 2805 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2838,303,0 chrX 120394 . T C 3958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=16.6727;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.787;QD=23.99;ReadPosRankSum=1.690;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3958,429,0 chrX 120754 . G A 5317.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=20.1111;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=17.55;SB=-3.227e+03 GT:AD:DP:GQ:PL 1/1:0,302:303:99:5317,559,0 chrX 120868 . C T 4058.01 SnpCluster AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=4.5574;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=16.98;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:4058,432,0 chrX 120874 . C T 4166.01 SnpCluster AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=3.8928;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=16.21;SB=-3.310e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:4166,441,0 chrX 120877 . T C 3830.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.706;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=5.8802;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;MQRankSum=1.053;QD=14.73;ReadPosRankSum=0.813;SB=-3.200e+03 GT:AD:DP:GQ:PL 1/1:1,259:260:99:3830,420,0 chrX 120887 . A G 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=252;Dels=0.00;FS=3.024;HaplotypeScore=10.9110;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;MQRankSum=1.609;QD=14.12;ReadPosRankSum=2.401;SB=-3.072e+03 GT:AD:DP:GQ:PL 1/1:2,249:252:99:3559,393,0 chrX 120971 . G A 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.561;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=54.36;MQ0=2;MQRankSum=-1.963;QD=0.98;ReadPosRankSum=-0.420;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:32,13:47:76:76,0,609 chrX 120973 . T C 69.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=54.23;MQ0=2;MQRankSum=-0.854;QD=1.50;ReadPosRankSum=0.268;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:30,16:46:99:99,0,564 chrX 120982 . C T 109.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.975;DP=45;Dels=0.00;FS=1.560;HaplotypeScore=18.4675;MLEAC=1;MLEAF=0.500;MQ=54.09;MQ0=2;MQRankSum=2.113;QD=2.42;ReadPosRankSum=-2.745;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,11:45:99:139,0,436 chrX 121384 . T C 6649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=347;Dels=0.00;FS=3.061;HaplotypeScore=21.2980;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.911;QD=19.16;ReadPosRankSum=1.662;SB=-4.312e+03 GT:AD:DP:GQ:PL 1/1:1,346:347:99:6649,735,0 chrX 121444 . T A 7962.01 PASS AC=2;AF=1.00;AN=2;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.42;SB=-3.960e+03 GT:AD:DP:GQ:PL 1/1:0,340:340:99:7962,838,0 chrX 122786 . G T 5932.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=17.5651;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.63;SB=-3.221e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5932,637,0 chrX 123514 . C G 3278.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=21.57;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,148:152:99:3278,354,0 chrX 123517 . G C 3148 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.58;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3181,345,0 chrX 123695 . T C 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=3.041;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.116;QD=24.71;ReadPosRankSum=2.414;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3410,369,0 chrX 124490 . T C 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.753;DP=168;Dels=0.00;FS=6.042;HaplotypeScore=21.1854;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.187;QD=22.86;ReadPosRankSum=2.898;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:3840,414,0 chrX 124553 . T C 4135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=178;Dels=0.00;FS=6.606;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.186;QD=23.23;ReadPosRankSum=2.366;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4135,453,0 chrX 124699 . G A 3271.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0534;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.20;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3271,342,0 chrX 125006 . G T 4593.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.3001;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.10;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4593,475,0 chrX 125246 . A G 4924.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=10.7465;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.86;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:0,233:236:99:4924,549,0 chrX 125687 . G A 5131.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=24.20;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5131,549,0 chrX 125702 . A G 4540.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=21.42;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4540,492,0 chrX 125717 . G A 4648.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=6.0735;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=21.52;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4648,487,0 chrX 125897 . T G 3909.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=20.90;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3909,423,0 chrX 125900 . A G 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=181;Dels=0.00;FS=3.004;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=-0.075;QD=21.04;ReadPosRankSum=2.409;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3808,417,0 chrX 125909 . A G 3224.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=169;Dels=0.00;FS=2.932;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=-0.592;QD=19.08;ReadPosRankSum=2.333;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3257,354,0 chrX 126262 . C T 2204 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2237,231,0 chrX 126296 . T C 1846 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1879,210,0 chrX 126339 . C T 2587 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2620,267,0 chrX 126481 . T C 1328 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.0332;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.42;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1361,147,0 chrX 126673 . G A 2429 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.1205;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=25.30;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2462,258,0 chrX 126753 . A G 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.01;FS=3.405;HaplotypeScore=10.4878;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-0.753;QD=19.32;ReadPosRankSum=1.707;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2738,306,0 chrX 127567 . A C 3514.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.24;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3514,393,0 chrX 127777 . G A 2987 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.98;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3020,318,0 chrX 127786 . C T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.7331;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=23.67;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3252,339,0 chrX 128489 . T C 4345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=187;Dels=0.00;FS=2.961;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.839;QD=23.24;ReadPosRankSum=2.423;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:4345,471,0 chrX 128573 . C T 4109.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.51;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:4109,427,0 chrX 129029 . A G 3292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.047;QD=22.24;ReadPosRankSum=1.709;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3292,354,0 chrX 129184 . C T 216.01 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=1.79;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:27:249,27,0 chrX 129219 . A G 2916 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.98;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2949,318,0 chrX 129833 . T C 2444 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.07;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2477,270,0 chrX 129954 . G A 2332 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.4462;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=20.28;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2365,249,0 chrX 130023 . T G 2815 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.8848;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=22.70;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2848,312,0 chrX 130065 . C T 2525 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.53;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2558,279,0 chrX 130077 . C T 2438 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=19.66;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2471,258,0 chrX 130120 . C T 2334 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.30;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2367,246,0 chrX 130174 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=20.43;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2260,234,0 chrX 130179 . T C 2037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;MQRankSum=-0.319;QD=18.19;ReadPosRankSum=2.164;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2070,228,0 chrX 130224 . A G 2080 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=16.51;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2113,225,0 chrX 130227 . C T 2202 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=17.34;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2235,237,0 chrX 130230 . T C 2105 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=3.761;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;MQRankSum=-0.550;QD=16.71;ReadPosRankSum=1.705;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2138,234,0 chrX 130263 . C T 2515 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=21.13;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2548,267,0 chrX 130584 . G T 2668 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=26.42;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2701,279,0 chrX 130774 . T A 2720 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.48;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2753,291,0 chrX 130800 . A G 2562 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=21.17;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2595,279,0 chrX 130817 . G A 2779 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.54;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2812,297,0 chrX 130854 . A G 2488 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.45;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2521,276,0 chrX 130889 . T C 2597 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.83;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2630,288,0 chrX 130946 . A G 2847 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=23.92;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2880,312,0 chrX 131168 . C T 4475.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.5296;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=23.43;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4475,469,0 chrX 131182 . T C 4095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=186;Dels=0.00;FS=2.745;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=0.087;QD=22.02;ReadPosRankSum=2.423;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:2,182:186:99:4095,447,0 chrX 131236 . T C 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;MQRankSum=-1.550;QD=16.83;ReadPosRankSum=1.712;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:2927,315,0 chrX 131240 . C T 2948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=3.036;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;MQRankSum=0.010;QD=17.34;ReadPosRankSum=1.650;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:2981,309,0 chrX 131266 . A T 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.379;DP=153;Dels=0.00;FS=9.204;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.063;QD=17.31;ReadPosRankSum=3.402;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:4,149:153:99:2682,282,0 chrX 131366 . T C 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=4.662;HaplotypeScore=15.9186;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=0.848;QD=21.49;ReadPosRankSum=1.714;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4234,459,0 chrX 131433 . G A 2926 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=21.20;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2959,309,0 chrX 131443 . T C 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=3.885;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=-1.075;QD=20.31;ReadPosRankSum=1.631;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2816,306,0 chrX 131878 . A G 3113 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=21.92;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3146,342,0 chrX 131884 . T C 2823 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=134;Dels=0.00;FS=3.008;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;MQRankSum=-0.743;QD=21.07;ReadPosRankSum=2.303;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2856,309,0 chrX 131886 . G A 2902 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=21.66;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2935,309,0 chrX 131968 . A G 3071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=3.701;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.968;QD=22.58;ReadPosRankSum=1.681;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3104,348,0 chrX 132010 . G A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.31;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3520,378,0 chrX 132022 . A G 3478.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=23.50;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3478,375,0 chrX 132405 . C T 2676 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.12;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2709,288,0 chrX 132673 . G A 2748 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2781,291,0 chrX 133192 . G A 4979.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.02;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4979,520,0 chrX 133305 . T C 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=126;Dels=0.00;FS=2.973;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.704;QD=22.12;ReadPosRankSum=2.390;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:2,122:126:99:2820,306,0 chrX 133342 . T C 2851 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.76;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2884,315,0 chrX 133354 . T C 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=3.399;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-1.410;QD=20.11;ReadPosRankSum=1.707;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2869,315,0 chrX 133771 . G A 5041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.433;DP=197;Dels=0.00;FS=3.122;HaplotypeScore=11.2308;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.923;QD=25.59;ReadPosRankSum=0.431;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:5041,520,0 chrX 133964 . C T 2975 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=15.5652;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.40;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3008,318,0 chrX 134085 . C T 1886 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.4272;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=17.46;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1919,204,0 chrX 134235 . A G 1676 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.22;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1709,186,0 chrX 134512 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.50;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3308,351,0 chrX 134728 . G A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3902;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.24;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3334,360,0 chrX 135253 . G A 5176.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.7209;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.42;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,208:212:99:5176,541,0 chrX 135282 . T C 5601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=14.5039;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.264;QD=23.63;ReadPosRankSum=1.717;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:5601,612,0 chrX 135448 . T C 6896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.952;DP=311;Dels=0.00;FS=14.008;HaplotypeScore=26.4354;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.588;QD=22.17;ReadPosRankSum=4.114;SB=-3.513e+03 GT:AD:DP:GQ:PL 1/1:6,303:311:99:6896,753,0 chrX 135579 . T C 6875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=311;Dels=0.00;FS=3.024;HaplotypeScore=21.6738;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.226;QD=22.11;ReadPosRankSum=2.434;SB=-3.952e+03 GT:AD:DP:GQ:PL 1/1:2,307:311:99:6875,768,0 chrX 135694 . A G 8550.01 filter AC=2;AF=1.00;AN=2;DP=383;Dels=0.00;FS=0.000;HaplotypeScore=24.5860;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.32;SB=-4.802e+03 GT:AD:DP:GQ:PL 1/1:0,383:383:99:8550,934,0 chrX 135754 . C T 6950.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=14.5346;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.56;SB=-3.995e+03 GT:AD:DP:GQ:PL 1/1:0,306:308:99:6950,745,0 chrX 135793 . T G 6234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=266;Dels=0.00;FS=7.007;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=1.979;QD=23.44;ReadPosRankSum=2.413;SB=-3.052e+03 GT:AD:DP:GQ:PL 1/1:2,264:266:99:6234,681,0 chrX 135988 . T C 3380.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.392;DP=185;Dels=0.00;FS=15.278;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;MQRankSum=-0.497;QD=18.27;ReadPosRankSum=3.363;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:4,177:185:99:3380,366,0 chrX 135994 . T C 3162 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=18.60;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3195,342,0 chrX 135996 . A G 3102 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.9255;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=18.25;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3135,345,0 chrX 136071 . A G 4040.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.26;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4040,444,0 chrX 136161 . C T 3095 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.0383;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.43;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3128,333,0 chrX 136195 . G A 4490.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=24.27;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4490,472,0 chrX 136623 . A C 4999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.272;DP=242;Dels=0.00;FS=2.359;HaplotypeScore=15.5264;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.984;QD=20.66;ReadPosRankSum=3.330;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:4,236:242:99:4999,564,0 chrX 136648 . C T 4509.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.27;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4509,486,0 chrX 136933 . A G 762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=86;Dels=0.02;FS=3.480;HaplotypeScore=12.1199;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-1.732;QD=8.86;ReadPosRankSum=-0.933;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:1,78:84:93:795,93,0 chrX 137291 . A G 2597 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.7422;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.82;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2630,288,0 chrX 137367 . T C 3739.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.3371;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.76;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3739,405,0 chrX 137522 . G A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.3574;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.88;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3582,376,0 chrX 137642 . T C 3864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=166;Dels=0.00;FS=3.036;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.294;QD=23.28;ReadPosRankSum=2.419;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:2,161:166:99:3864,417,0 chrX 137767 . G A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.8467;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.42;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3991,426,0 chrX 138413 . C T 3129 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.23;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3162,327,0 chrX 138819 . T C 4515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.226;DP=187;Dels=0.00;FS=8.032;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.061;QD=24.14;ReadPosRankSum=3.376;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:4,183:187:99:4515,492,0 chrX 138851 . C T 4692.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.23;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4692,490,0 chrX 138933 . A T 5726.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.3153;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.68;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5726,592,0 chrX 139013 . T C 4605.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=16.3368;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.35;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4605,495,0 chrX 139088 . A G 5052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.303;DP=234;Dels=0.00;FS=5.112;HaplotypeScore=23.0119;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.086;QD=21.59;ReadPosRankSum=3.416;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:5,229:234:99:5052,549,0 chrX 139438 . C T 2027 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.30;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2060,216,0 chrX 139460 . T A 2381 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=24.05;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2414,255,0 chrX 139505 . A G 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=8.316;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.675;QD=21.60;ReadPosRankSum=1.586;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2085,237,0 chrX 139563 . C T 1966 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=26.21;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1999,204,0 chrX 139713 . T C 3205.99 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.11;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3239,354,0 chrX 139819 . A G 2257 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=88.6046;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=20.33;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2290,258,0 chrX 139836 . T C 333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=107.4578;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-0.281;QD=2.75;ReadPosRankSum=1.643;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,116:121:42:366,42,0 chrX 140058 . G A 3395.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=24.60;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3395,352,0 chrX 141042 . A G 4983.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.96;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4983,543,0 chrX 141078 . G A 4147.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=21.49;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4147,427,0 chrX 141083 . G A 3950.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.01;FS=0.000;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=21.01;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3950,412,0 chrX 141376 . T C 2852 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.94;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2885,312,0 chrX 141409 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.77;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2950,318,0 chrX 141451 . A G 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=106;Dels=0.00;FS=3.010;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.556;QD=21.75;ReadPosRankSum=1.699;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2338,255,0 chrX 141656 . G T 3788.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.97;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3788,402,0 chrX 141743 . A G 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.172;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.151;QD=24.10;ReadPosRankSum=1.707;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3326,357,0 chrX 141900 . C T 4135.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=26.01;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4135,430,0 chrX 141924 . G A 3773.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.06;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:3773,397,0 chrX 142022 . G A 4385.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=24.09;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4385,460,0 chrX 142168 . C T 4168.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.68;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4168,441,0 chrX 142223 . T C 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=4.161;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.795;QD=22.63;ReadPosRankSum=1.689;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3620,396,0 chrX 142256 . C T 3144 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.99;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3177,327,0 chrX 142259 . G C 2895 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.7165;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.10;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2928,327,0 chrX 142307 . T C 3045 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.8892;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=18.68;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3078,342,0 chrX 142535 . T C 2862 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.05;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2895,312,0 chrX 142640 . C T 4673.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.6141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4673,490,0 chrX 142749 . T A 4587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=189;Dels=0.00;FS=2.847;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=2.213;QD=24.27;ReadPosRankSum=2.397;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4587,484,0 chrX 143033 . G C 2964 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=19.25;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2997,327,0 chrX 143163 . G A 2750 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.15;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2783,291,0 chrX 143166 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.57;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2666,282,0 chrX 143493 . A C 5268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=223;Dels=0.00;FS=8.821;HaplotypeScore=9.8322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.345;QD=23.62;ReadPosRankSum=2.338;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:2,218:223:99:5268,585,0 chrX 144131 . T C 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.168;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.500;QD=18.07;ReadPosRankSum=1.706;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2508,261,0 chrX 144137 . G A 2835 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.25;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2868,300,0 chrX 144344 . T C 3799.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.61;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3799,408,0 chrX 144368 . G A 4074.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=23.55;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4074,427,0 chrX 144558 . A G 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=147;Dels=0.00;FS=5.953;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.359;QD=22.74;ReadPosRankSum=2.924;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:3,143:147:99:3343,360,0 chrX 144723 . C T 2685 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=7.8094;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.82;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2718,282,0 chrX 144890 . C T 2334 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.02;FS=0.000;HaplotypeScore=7.2420;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.82;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2367,243,0 chrX 144958 . G T 2173 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=12.9950;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.12;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2206,234,0 chrX 145341 . C T 2714 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=21.20;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2747,291,0 chrX 145343 . T C 2542 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=19.86;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2575,288,0 chrX 145354 . C A 2665 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=20.82;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2698,279,0 chrX 145376 . A G 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-1.113;QD=20.17;ReadPosRankSum=1.707;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2857,306,0 chrX 145573 . T C 2891 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.2794;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=23.13;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2924,324,0 chrX 145633 . A G 2222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=108;Dels=0.00;FS=7.280;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.536;QD=20.57;ReadPosRankSum=2.404;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2255,243,0 chrX 145645 . C A 2354 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.62;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2387,252,0 chrX 145699 . G T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.8353;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.92;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3366,354,0 chrX 145879 . A G 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-1.501;QD=23.48;ReadPosRankSum=1.709;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3546,390,0 chrX 146059 . C G 3629.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=16.0910;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.47;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3629,393,0 chrX 146117 . G A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=24.07;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3682,390,0 chrX 146319 . A G 4707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.398;DP=224;Dels=0.00;FS=9.130;HaplotypeScore=7.6284;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=-1.032;QD=21.01;ReadPosRankSum=3.422;SB=-2.950e+03 GT:AD:DP:GQ:PL 1/1:4,220:224:99:4707,510,0 chrX 146367 . G A 2837 SnpCluster AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.60;MQ0=0;QD=14.33;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:2870,300,0 chrX 146369 . G A 2637 SnpCluster AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;QD=14.10;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:2670,282,0 chrX 146376 . T C 2219 SnpCluster AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.09;MQ0=0;QD=11.87;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:2252,246,0 chrX 146388 . C T 1894 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.8606;MLEAC=2;MLEAF=1.00;MQ=32.92;MQ0=0;QD=9.92;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:1927,207,0 chrX 146394 . A G 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.385;DP=188;Dels=0.00;FS=15.295;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=34.92;MQ0=0;MQRankSum=0.427;QD=10.25;ReadPosRankSum=3.366;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:4,182:188:99:1960,216,0 chrX 146412 . T C 2228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=189;Dels=0.00;FS=2.847;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;MQRankSum=-1.307;QD=11.79;ReadPosRankSum=2.410;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:2,185:189:99:2261,246,0 chrX 146509 . C T 5555.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=9.3568;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=23.84;SB=-3.108e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5555,580,0 chrX 146535 . G A 5203.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=16.0094;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=22.72;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,223:229:99:5203,547,0 chrX 146580 . C T 6037.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=16.8828;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=23.13;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:0,257:261:99:6037,643,0 chrX 146738 . G A 3805.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=22.4116;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.68;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3805,397,0 chrX 146789 . C G 4668.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.61;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4668,504,0 chrX 147014 . G T 2820 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.31;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2853,297,0 chrX 147143 . C T 4026.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.1222;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.70;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4026,415,0 chrX 147612 . T C 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=199;Dels=0.00;FS=4.885;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=0.625;QD=18.12;ReadPosRankSum=1.607;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,195:199:99:3605,393,0 chrX 147613 . T C 3421.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=17.45;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3421,384,0 chrX 147768 . C T 2847 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.7237;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=22.78;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2880,303,0 chrX 147787 . A G 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=123;Dels=0.00;FS=5.846;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=-0.099;QD=21.90;ReadPosRankSum=2.909;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:3,119:123:99:2727,300,0 chrX 147794 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=20.23;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2440,261,0 chrX 147905 . T G 3280.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.60;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3280,357,0 chrX 148056 . C A 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.522;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.9827;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=0.501;QD=22.66;ReadPosRankSum=1.482;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3761,375,0 chrX 148061 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.2374;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=20.28;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3468,369,0 chrX 148152 . C T 4351.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.24;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4351,468,0 chrX 148168 . G C 4193.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.8229;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.16;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4193,468,0 chrX 148288 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.5400;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=21.22;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2983,312,0 chrX 148303 . T C 2663 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=20.17;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2696,294,0 chrX 148549 . A G 1786 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=21.26;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1819,198,0 chrX 148561 . T C 1684 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=20.29;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1717,186,0 chrX 148569 . C T 1770 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=20.82;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1803,186,0 chrX 148594 . G A 1888 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.98;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1921,201,0 chrX 149254 . T G 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=2.966;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.588;QD=24.92;ReadPosRankSum=2.395;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3389,363,0 chrX 150229 . T C 4111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=218;Dels=0.01;FS=3.031;HaplotypeScore=60.5717;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;MQRankSum=1.147;QD=18.86;ReadPosRankSum=1.602;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:4,212:216:99:4111,453,0 chrX 150482 . A G 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=129;Dels=0.00;FS=2.929;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.801;QD=24.32;ReadPosRankSum=2.392;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3170,339,0 chrX 150511 . G C 2634 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.73;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2667,291,0 chrX 150689 . C G 2126 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.64;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2159,240,0 chrX 153250 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.51;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1811,189,0 chrX 153255 . A T 1619 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.80;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1652,174,0 chrX 153335 . T C 836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=4.087;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=1.310;QD=20.39;ReadPosRankSum=1.648;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:96:869,96,0 chrX 153377 . A C 1588 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=23.35;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1621,177,0 chrX 153819 . A G 115.46 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;DP=10;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=31.15;MQ0=1;MQRankSum=0.573;QD=11.55;ReadPosRankSum=0.573;SB=-4.334e+00 GT:AD:DP:GQ:PL 0/1:3,7:10:1:144,0,1 chrX 154467 . A G 3136 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.615;DP=287;Dels=0.00;FS=126.489;HaplotypeScore=18.5370;MLEAC=2;MLEAF=1.00;MQ=21.07;MQ0=138;MQRankSum=-4.752;QD=10.93;ReadPosRankSum=4.743;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,277:287:99:3169,348,0 chrX 154973 . A G 2859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=3.802;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.840;QD=21.66;ReadPosRankSum=1.653;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2892,324,0 chrX 154996 . G T 2770 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.08;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2803,288,0 chrX 155081 . T C 3608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=161;Dels=0.00;FS=10.225;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.194;QD=22.41;ReadPosRankSum=2.956;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3608,390,0 chrX 155175 . T G 4836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.4956;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.783;QD=23.25;ReadPosRankSum=1.715;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4836,522,0 chrX 155238 . A G 4059.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.3795;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.68;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4059,444,0 chrX 155396 . G A 3789.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.6855;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.03;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3789,405,0 chrX 155456 . G A 4704.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.0224;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.64;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4704,493,0 chrX 155585 . A G 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.2842;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.049;QD=21.10;ReadPosRankSum=1.683;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3029,336,0 chrX 155683 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.58;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3348,348,0 chrX 155741 . T A 2438 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.96;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2471,258,0 chrX 155930 . A G 3016 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.34;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3049,333,0 chrX 155973 . C T 2950 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.41;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2983,309,0 chrX 155999 . G A 3218.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=24.56;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3251,331,0 chrX 156185 . G A 3943.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=24.19;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3943,412,0 chrX 156310 . T C 2590 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=22.52;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2623,285,0 chrX 156356 . T G 2160 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.77;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2193,234,0 chrX 156360 . A C 2270 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.42;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2303,243,0 chrX 156375 . T C 2484 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.70;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2517,273,0 chrX 156493 . A T 2127 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=18.66;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2160,228,0 chrX 156505 . T C 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=133;Dels=0.00;FS=2.510;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-0.439;QD=16.62;ReadPosRankSum=2.916;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:3,129:133:99:2244,249,0 chrX 156530 . T C 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=8.2420;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.654;QD=18.45;ReadPosRankSum=2.955;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:3,152:155:99:2911,315,0 chrX 156863 . T A 4217.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.156;QD=25.25;ReadPosRankSum=1.670;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4217,445,0 chrX 157039 . T C 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=147;Dels=0.00;FS=6.418;HaplotypeScore=9.7547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.227;QD=25.11;ReadPosRankSum=2.416;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3691,393,0 chrX 157089 . G T 3618.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3618,390,0 chrX 157168 . T C 2338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=113;Dels=0.00;FS=3.385;HaplotypeScore=9.4980;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.715;QD=20.69;ReadPosRankSum=1.637;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,108:113:99:2371,258,0 chrX 157299 . T C 2466 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.63;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2499,273,0 chrX 157380 . C T 3285.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=24.15;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3285,345,0 chrX 157408 . A G 2103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=4.576;HaplotypeScore=93.7513;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=-0.524;QD=19.29;ReadPosRankSum=1.669;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2136,237,0 chrX 157409 . G A 2206 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=93.7513;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=20.43;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2239,234,0 chrX 157487 . A G 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.946;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.4009;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.356;QD=20.75;ReadPosRankSum=-0.111;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3000,316,0 chrX 157517 . G C 3406.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.65;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3406,372,0 chrX 157619 . A T 3688.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.4082;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=23.64;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3688,396,0 chrX 157695 . G T 3762.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=15.5086;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.80;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3762,396,0 chrX 158168 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=19.5133;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.64;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3877,405,0 chrX 158376 . A G 3479.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.59;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3479,387,0 chrX 158898 . G C 5142.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.9267;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=23.16;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5142,567,0 chrX 159076 . G A 4310.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.1980;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=23.05;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4310,451,0 chrX 159102 . T C 3388.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.8907;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;QD=19.47;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3388,366,0 chrX 159120 . A G 2610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;MQRankSum=-1.744;QD=15.44;ReadPosRankSum=2.959;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:3,166:169:99:2643,297,0 chrX 159124 . T C 2680 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=15.95;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2713,297,0 chrX 159135 . G T 2864 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.3328;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=16.55;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2897,306,0 chrX 159201 . A G 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.231;DP=159;Dels=0.00;FS=12.938;HaplotypeScore=8.7261;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=1.340;QD=18.08;ReadPosRankSum=4.461;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:7,150:159:99:2908,315,0 chrX 159420 . C T 1384 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=63.8467;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=13.06;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,71:106:99:1417,147,0 chrX 159443 . T A 135.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.633;DP=97;Dels=0.00;FS=53.640;HaplotypeScore=10.5165;MLEAC=1;MLEAF=0.500;MQ=49.91;MQ0=0;MQRankSum=2.293;QD=1.39;ReadPosRankSum=-4.694;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,19:97:99:165,0,431 chrX 159754 . T C 3136 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.89;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3169,351,0 chrX 159839 . G A 2572 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.09;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2605,276,0 chrX 159880 . A G 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=10.4764;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.595;QD=21.70;ReadPosRankSum=1.706;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2897,318,0 chrX 159937 . C G 2657 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=111.3092;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=20.28;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2690,294,0 chrX 161596 . A G 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=161;Dels=0.00;FS=2.821;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.407;QD=23.53;ReadPosRankSum=2.373;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3788,420,0 chrX 162437 . G A 3282.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.95;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3282,342,0 chrX 162522 . C A 3160 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6430;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3193,333,0 chrX 162723 . G A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.7590;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.52;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4076,444,0 chrX 162878 . A G 4629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.015;DP=205;Dels=0.00;FS=6.032;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.132;QD=22.58;ReadPosRankSum=2.230;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:3,202:205:99:4629,504,0 chrX 163140 . A G 5376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=225;Dels=0.00;FS=7.334;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.217;QD=23.89;ReadPosRankSum=2.428;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5376,585,0 chrX 163580 . T C 2800 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.2268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2833,303,0 chrX 164035 . A G 3772.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.65;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3772,408,0 chrX 164772 . A G 2827 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.8615;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.36;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2860,312,0 chrX 164839 . T C 3466.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.90;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3466,384,0 chrX 164955 . C G 3322.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.91;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3322,357,0 chrX 165369 . C G 3900.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.01;FS=0.000;HaplotypeScore=11.9052;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.21;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3900,429,0 chrX 165537 . C T 2032 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=23.09;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2065,210,0 chrX 165849 . C T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4829;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.15;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3623,390,0 chrX 166575 . T C 4756.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4756,534,0 chrX 166814 . C T 3640.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.59;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3640,390,0 chrX 166977 . T G 4835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=210;Dels=0.00;FS=2.959;HaplotypeScore=14.3992;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.216;QD=23.02;ReadPosRankSum=2.426;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:4835,517,0 chrX 167196 . G A 5284.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.2737;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.48;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5284,553,0 chrX 167286 . C T 4451.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=21.82;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4451,469,0 chrX 167289 . C T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.55;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4375,463,0 chrX 167370 . G A 5191.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.60;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5191,553,0 chrX 167552 . G A 6254.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.53;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:6254,658,0 chrX 167739 . T C 5354.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=14.9393;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.40;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5354,594,0 chrX 167814 . C T 6712.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=22.1885;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.14;SB=-3.367e+03 GT:AD:DP:GQ:PL 1/1:0,287:290:99:6712,703,0 chrX 167997 . C A 6238.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.02;SB=-3.399e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:6238,649,0 chrX 168672 . G A 4943.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.32;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4943,534,0 chrX 168888 . T C 5162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.9844;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.408;QD=22.94;ReadPosRankSum=1.701;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5162,558,0 chrX 169074 . G A 4955.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.2036;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.82;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4955,520,0 chrX 169122 . A G 3827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.326;QD=22.51;ReadPosRankSum=1.691;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3827,420,0 chrX 170079 . A G 3563.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3563,390,0 chrX 170274 . A G 5086.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.93;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5086,547,0 chrX 170556 . T A 4656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=193;Dels=0.00;FS=2.945;HaplotypeScore=23.5115;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.955;QD=24.12;ReadPosRankSum=2.398;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4656,498,0 chrX 170649 . C A 4783.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.8153;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.46;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4783,516,0 chrX 171062 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.2985;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.11;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3471,378,0 chrX 171250 . A G 4966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=211;Dels=0.00;FS=12.904;HaplotypeScore=15.0244;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.005;QD=23.54;ReadPosRankSum=2.776;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:3,208:211:99:4966,537,0 chrX 171357 . A G 4238.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.4983;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.68;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4238,462,0 chrX 171490 . G T 3621.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5112;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.49;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3621,378,0 chrX 171764 . T C 4141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=188;Dels=0.00;FS=6.073;HaplotypeScore=12.2141;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=2.188;QD=22.03;ReadPosRankSum=2.920;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:3,184:188:99:4141,459,0 chrX 172240 . A G 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=3.680;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.312;QD=24.48;ReadPosRankSum=1.711;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3965,429,0 chrX 172676 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.25;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3032,324,0 chrX 173226 . G A 4570.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=12.1508;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=19.28;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,234:237:99:4570,495,0 chrX 173249 . C G 4761.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.01;FS=0.000;HaplotypeScore=28.9900;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=19.35;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,237:243:99:4761,513,0 chrX 173342 . G A 3704.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.8542;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;QD=15.97;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:3704,387,0 chrX 173354 . A G 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=264;Dels=0.00;FS=16.248;HaplotypeScore=15.0709;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;MQRankSum=-0.797;QD=15.66;ReadPosRankSum=2.943;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:3,259:264:99:4133,450,0 chrX 173397 . G A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=16.72;SB=-3.131e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:3912,414,0 chrX 173399 . C T 4010.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=16.92;SB=-3.131e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4010,418,0 chrX 173420 . T C 4666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=8.1969;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-0.020;QD=17.61;ReadPosRankSum=1.654;SB=-3.505e+03 GT:AD:DP:GQ:PL 1/1:1,264:265:99:4666,510,0 chrX 173479 . T A 6979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=308;Dels=0.00;FS=6.906;HaplotypeScore=17.9293;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=-0.446;QD=22.66;ReadPosRankSum=2.401;SB=-3.889e+03 GT:AD:DP:GQ:PL 1/1:2,306:308:99:6979,724,0 chrX 173581 . A T 8238.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=368;Dels=0.00;FS=11.292;HaplotypeScore=14.3444;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.190;QD=22.39;ReadPosRankSum=2.964;SB=-3.957e+03 GT:AD:DP:GQ:PL 1/1:3,365:368:99:8238,871,0 chrX 173681 . G A 8127.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=8.7422;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=23.69;SB=-3.298e+03 GT:AD:DP:GQ:PL 1/1:0,339:343:99:8127,844,0 chrX 173707 . C T 7985.01 filter AC=2;AF=1.00;AN=2;DP=364;Dels=0.00;FS=0.000;HaplotypeScore=8.8003;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=21.94;SB=-3.639e+03 GT:AD:DP:GQ:PL 1/1:0,363:364:99:7985,853,0 chrX 173735 . T G 7143.01 filter AC=2;AF=1.00;AN=2;DP=373;Dels=0.00;FS=0.000;HaplotypeScore=6.1729;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.15;SB=-4.016e+03 GT:AD:DP:GQ:PL 1/1:0,373:373:99:7143,798,0 chrX 173746 . T C 7968.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=416;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.847;QD=19.15;ReadPosRankSum=1.682;SB=-4.698e+03 GT:AD:DP:GQ:PL 1/1:1,414:416:99:7968,865,0 chrX 174178 . C T 10747.01 filter AC=2;AF=1.00;AN=2;DP=453;Dels=0.01;FS=0.000;HaplotypeScore=43.7581;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.72;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,443:447:99:10747,1126,0 chrX 174303 . A G 7616.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=362;Dels=0.00;FS=9.663;HaplotypeScore=17.8461;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.752;QD=21.04;ReadPosRankSum=2.969;SB=-4.391e+03 GT:AD:DP:GQ:PL 1/1:3,357:362:99:7616,835,0 chrX 174334 . A C 8008.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=373;Dels=0.00;FS=5.350;HaplotypeScore=16.7660;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=0.264;QD=21.47;ReadPosRankSum=2.899;SB=-3.739e+03 GT:AD:DP:GQ:PL 1/1:3,366:373:99:8008,868,0 chrX 174396 . A C 11683.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.313;DP=526;Dels=0.00;FS=2.359;HaplotypeScore=27.5056;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.897;QD=22.21;ReadPosRankSum=3.439;SB=-3.742e+03 GT:AD:DP:GQ:PL 1/1:4,518:526:99:11683,1261,0 chrX 174446 . C T 11812.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.402;DP=490;Dels=0.00;FS=0.000;HaplotypeScore=25.5961;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.718;QD=24.11;ReadPosRankSum=1.207;SB=-4.201e+03 GT:AD:DP:GQ:PL 1/1:1,486:490:99:11812,1235,0 chrX 174512 . C T 6832.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.24;SB=-3.200e+03 GT:AD:DP:GQ:PL 1/1:0,291:294:99:6832,706,0 chrX 175309 . C T 9775.01 filter AC=2;AF=1.00;AN=2;DP=397;Dels=0.00;FS=0.000;HaplotypeScore=26.5821;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.62;SB=-4.391e+03 GT:AD:DP:GQ:PL 1/1:0,395:397:99:9775,1012,0 chrX 175519 . T A 12601.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=504;Dels=0.00;FS=0.000;HaplotypeScore=29.8457;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.876;QD=25.00;ReadPosRankSum=1.690;SB=-4.071e+03 GT:AD:DP:GQ:PL 1/1:1,503:504:99:12601,1319,0 chrX 175555 . T A 13538.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.726;DP=547;Dels=0.00;FS=0.000;HaplotypeScore=28.7527;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=0.707;QD=24.75;ReadPosRankSum=1.694;SB=-4.438e+03 GT:AD:DP:GQ:PL 1/1:1,546:547:99:13538,1427,0 chrX 175828 . T C 8500.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=426;Dels=0.00;FS=16.857;HaplotypeScore=14.5586;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.506;QD=19.95;ReadPosRankSum=2.936;SB=-2.881e+03 GT:AD:DP:GQ:PL 1/1:3,421:425:99:8500,948,0 chrX 176039 . G C 6497.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=24.61;SB=-3.055e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:6497,700,0 chrX 176123 . T G 7325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=15.6768;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.406;QD=24.10;ReadPosRankSum=1.709;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:1,302:303:99:7325,799,0 chrX 176153 . G A 7736.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=19.3584;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=23.95;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,319:323:99:7736,817,0 chrX 176225 . T G 6618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=310;Dels=0.00;FS=3.139;HaplotypeScore=6.8498;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.432;QD=21.35;ReadPosRankSum=1.654;SB=-3.998e+03 GT:AD:DP:GQ:PL 1/1:1,308:310:99:6618,718,0 chrX 176228 . T C 6517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=305;Dels=0.00;FS=3.170;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.914;QD=21.37;ReadPosRankSum=1.709;SB=-3.864e+03 GT:AD:DP:GQ:PL 1/1:1,304:305:99:6517,711,0 chrX 176636 . G A 9063.01 filter AC=2;AF=1.00;AN=2;DP=377;Dels=0.00;FS=0.000;HaplotypeScore=15.9196;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=24.04;SB=-5.145e+03 GT:AD:DP:GQ:PL 1/1:0,377:377:99:9063,937,0 chrX 176674 . A G 7347.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=8.1130;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-1.060;QD=20.30;ReadPosRankSum=1.684;SB=-4.386e+03 GT:AD:DP:GQ:PL 1/1:1,360:362:99:7347,798,0 chrX 176680 . G A 7398.01 filter AC=2;AF=1.00;AN=2;DP=369;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.05;SB=-4.576e+03 GT:AD:DP:GQ:PL 1/1:0,369:369:99:7398,772,0 chrX 176946 . C T 9421.01 filter AC=2;AF=1.00;AN=2;DP=376;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=25.06;SB=-4.906e+03 GT:AD:DP:GQ:PL 1/1:0,371:376:99:9421,970,0 chrX 176970 . A T 8314.01 PASS AC=2;AF=1.00;AN=2;DP=348;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.89;SB=-4.597e+03 GT:AD:DP:GQ:PL 1/1:0,348:348:99:8314,874,0 chrX 177327 . T C 6178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=266;Dels=0.00;FS=3.011;HaplotypeScore=10.6209;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-1.297;QD=23.23;ReadPosRankSum=2.394;SB=-3.378e+03 GT:AD:DP:GQ:PL 1/1:2,262:266:99:6178,670,0 chrX 177352 . G A 6049.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=10.4063;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.27;SB=-3.052e+03 GT:AD:DP:GQ:PL 1/1:0,257:260:99:6049,622,0 chrX 177532 . G A 6018.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.97;SB=-3.088e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:6018,640,0 chrX 177594 . A C 6705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=18.9141;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.396;QD=23.20;ReadPosRankSum=1.720;SB=-3.367e+03 GT:AD:DP:GQ:PL 1/1:1,288:289:99:6705,732,0 chrX 177637 . T A 5589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=258;Dels=0.00;FS=6.068;HaplotypeScore=29.5596;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.016;QD=21.66;ReadPosRankSum=2.942;SB=-3.339e+03 GT:AD:DP:GQ:PL 1/1:3,255:258:99:5589,600,0 chrX 177798 . C T 2014 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=17.82;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,109:113:99:2047,225,0 chrX 178010 . G T 4108.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=8.6665;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=26.33;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,154:155:99:4108,424,0 chrX 178358 . C T 10360.01 filter AC=2;AF=1.00;AN=2;DP=412;Dels=0.00;FS=0.000;HaplotypeScore=12.1830;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.15;SB=-5.725e+03 GT:AD:DP:GQ:PL 1/1:0,411:412:99:10360,1073,0 chrX 178475 . T C 9095.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=395;Dels=0.00;FS=0.000;HaplotypeScore=22.3679;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.250;QD=23.03;ReadPosRankSum=1.715;SB=-4.476e+03 GT:AD:DP:GQ:PL 1/1:1,394:395:99:9095,994,0 chrX 178571 . C T 10686.01 filter AC=2;AF=1.00;AN=2;DP=428;Dels=0.00;FS=0.000;HaplotypeScore=22.0029;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.97;SB=-5.442e+03 GT:AD:DP:GQ:PL 1/1:0,427:428:99:10686,1147,0 chrX 178616 . G A 9794.01 filter AC=2;AF=1.00;AN=2;DP=422;Dels=0.00;FS=0.000;HaplotypeScore=30.7159;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.21;SB=-5.214e+03 GT:AD:DP:GQ:PL 1/1:0,421:422:99:9794,1018,0 chrX 179084 . T C 6895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.270;DP=283;Dels=0.00;FS=8.411;HaplotypeScore=18.2338;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.597;QD=24.36;ReadPosRankSum=3.412;SB=-3.081e+03 GT:AD:DP:GQ:PL 1/1:4,278:283:99:6895,745,0 chrX 179498 . G A 7783.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=19.6135;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.95;SB=-3.181e+03 GT:AD:DP:GQ:PL 1/1:0,309:312:99:7783,817,0 chrX 179659 . C T 10267.01 filter AC=2;AF=1.00;AN=2;DP=436;Dels=0.00;FS=0.000;HaplotypeScore=19.1062;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.55;SB=-5.346e+03 GT:AD:DP:GQ:PL 1/1:0,429:436:99:10267,1093,0 chrX 180185 . T A 8877.01 PASS AC=2;AF=1.00;AN=2;DP=355;Dels=0.00;FS=0.000;HaplotypeScore=24.9437;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;QD=25.01;SB=-4.145e+03 GT:AD:DP:GQ:PL 1/1:0,354:354:99:8877,952,0 chrX 180249 . C T 8438.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=14.5643;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=25.49;SB=-4.288e+03 GT:AD:DP:GQ:PL 1/1:0,327:331:99:8438,880,0 chrX 180754 . A G 8377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=350;Dels=0.00;FS=3.005;HaplotypeScore=23.4444;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.483;QD=23.93;ReadPosRankSum=2.428;SB=-4.307e+03 GT:AD:DP:GQ:PL 1/1:2,346:350:99:8377,907,0 chrX 181205 . G A 8683.01 filter AC=2;AF=1.00;AN=2;DP=381;Dels=0.01;FS=0.000;HaplotypeScore=26.5368;MLEAC=2;MLEAF=1.00;MQ=60.59;MQ0=0;QD=22.79;SB=-3.917e+03 GT:AD:DP:GQ:PL 1/1:0,377:377:99:8683,913,0 chrX 181523 . G C 8765.01 filter AC=2;AF=1.00;AN=2;DP=409;Dels=0.00;FS=0.000;HaplotypeScore=23.2544;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.43;SB=-4.550e+03 GT:AD:DP:GQ:PL 1/1:0,404:409:99:8765,981,0 chrX 181680 . T C 8003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.328;DP=352;Dels=0.00;FS=15.658;HaplotypeScore=26.2950;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-1.379;QD=22.74;ReadPosRankSum=3.417;SB=-3.743e+03 GT:AD:DP:GQ:PL 1/1:4,346:352:99:8003,891,0 chrX 181755 . G A 9234.01 filter AC=2;AF=1.00;AN=2;DP=365;Dels=0.00;FS=0.000;HaplotypeScore=18.0340;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=25.30;SB=-4.895e+03 GT:AD:DP:GQ:PL 1/1:0,362:365:99:9234,967,0 chrX 181907 . T G 7305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=13.5141;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.196;QD=21.61;ReadPosRankSum=2.255;SB=-4.059e+03 GT:AD:DP:GQ:PL 1/1:3,335:338:99:7305,787,0 chrX 181967 . T C 6584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=289;Dels=0.00;FS=4.378;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.103;QD=22.78;ReadPosRankSum=1.720;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:1,284:289:99:6584,715,0 chrX 182227 . G C 5744.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=15.7115;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.88;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:0,248:251:99:5744,630,0 chrX 182825 . G A 8477.01 filter AC=2;AF=1.00;AN=2;DP=386;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.96;SB=-4.678e+03 GT:AD:DP:GQ:PL 1/1:0,386:386:99:8477,880,0 chrX 183608 . T C 8129.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=338;Dels=0.00;FS=2.821;HaplotypeScore=24.7343;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.106;QD=24.05;ReadPosRankSum=2.384;SB=-3.401e+03 GT:AD:DP:GQ:PL 1/1:2,333:338:99:8129,889,0 chrX 183648 . G C 7756.01 filter AC=2;AF=1.00;AN=2;DP=367;Dels=0.00;FS=0.000;HaplotypeScore=8.9261;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.13;SB=-3.459e+03 GT:AD:DP:GQ:PL 1/1:0,362:367:99:7756,849,0 chrX 183666 . G A 7834.01 filter AC=2;AF=1.00;AN=2;DP=372;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.06;SB=-3.958e+03 GT:AD:DP:GQ:PL 1/1:0,371:372:99:7834,853,0 chrX 183738 . C T 7325.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=12.7771;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.18;SB=-3.593e+03 GT:AD:DP:GQ:PL 1/1:0,314:316:99:7325,787,0 chrX 183827 . T C 7672.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.208;DP=381;Dels=0.00;FS=14.444;HaplotypeScore=15.4024;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.833;QD=20.14;ReadPosRankSum=3.383;SB=-4.196e+03 GT:AD:DP:GQ:PL 1/1:4,373:381:99:7672,838,0 chrX 183834 . C T 8147.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.539;DP=377;Dels=0.00;FS=0.000;HaplotypeScore=10.0874;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=1.216;QD=21.61;ReadPosRankSum=0.046;SB=-4.547e+03 GT:AD:DP:GQ:PL 1/1:1,375:377:99:8147,853,0 chrX 184128 . C A 7374.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=25.60;SB=-3.204e+03 GT:AD:DP:GQ:PL 1/1:0,287:288:99:7374,775,0 chrX 184212 . A G 4380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.385;DP=252;Dels=0.00;FS=2.405;HaplotypeScore=11.3606;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;MQRankSum=-2.106;QD=17.38;ReadPosRankSum=3.392;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:4,248:252:99:4380,471,0 chrX 184221 . T C 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=245;Dels=0.00;FS=11.639;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.48;MQ0=0;MQRankSum=-0.520;QD=16.47;ReadPosRankSum=2.429;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:2,241:245:99:4036,456,0 chrX 184236 . C T 4013.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=186.9167;MLEAC=2;MLEAF=1.00;MQ=39.25;MQ0=0;QD=17.30;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:4013,421,0 chrX 184244 . G C 477 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=189.9057;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=2.08;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,225:229:57:510,57,0 chrX 184421 . G T 4938.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=24.21;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4938,514,0 chrX 184438 . A G 4473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=4.124;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;MQRankSum=0.131;QD=22.37;ReadPosRankSum=1.715;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4473,486,0 chrX 184439 . A G 4488.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=22.78;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4488,477,0 chrX 184537 . T C 4731.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.02;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4731,513,0 chrX 184592 . C T 5890.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=15.4485;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=24.96;SB=-3.081e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5890,616,0 chrX 184824 . C T 5922.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=23.04;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:5922,642,0 chrX 184846 . G A 5010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=3.4927;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-0.859;QD=20.62;ReadPosRankSum=-0.401;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:1,241:243:99:5010,535,0 chrX 184848 . T C 5064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.327;DP=247;Dels=0.00;FS=13.712;HaplotypeScore=6.4796;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=-0.766;QD=20.50;ReadPosRankSum=3.411;SB=-2.886e+03 GT:AD:DP:GQ:PL 1/1:4,243:247:99:5064,549,0 chrX 185080 . G A 6796.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=10.4865;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=23.04;SB=-3.809e+03 GT:AD:DP:GQ:PL 1/1:0,292:295:99:6796,727,0 chrX 185090 . T C 7032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=312;Dels=0.00;FS=6.205;HaplotypeScore=11.4377;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.574;QD=22.54;ReadPosRankSum=2.362;SB=-3.995e+03 GT:AD:DP:GQ:PL 1/1:2,308:312:99:7032,763,0 chrX 185641 . T C 4532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.1191;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.115;QD=25.04;ReadPosRankSum=2.409;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4532,489,0 chrX 188491 . T C 7598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=339;Dels=0.00;FS=9.502;HaplotypeScore=17.4432;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.926;QD=22.41;ReadPosRankSum=2.944;SB=-4.351e+03 GT:AD:DP:GQ:PL 1/1:3,336:339:99:7598,831,0 chrX 189013 . G C 6209.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=31.0942;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.84;SB=-3.669e+03 GT:AD:DP:GQ:PL 1/1:0,293:298:99:6209,693,0 chrX 189631 . G T 4451.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.83;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4451,463,0 chrX 189655 . A T 4899.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.07;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4899,525,0 chrX 191229 . A G 7808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=322;Dels=0.00;FS=10.637;HaplotypeScore=26.7057;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.502;QD=24.25;ReadPosRankSum=2.953;SB=-3.544e+03 GT:AD:DP:GQ:PL 1/1:3,317:322:99:7808,853,0 chrX 191341 . T C 5540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=10.6382;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.782;QD=22.07;ReadPosRankSum=1.690;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:1,247:251:99:5540,606,0 chrX 191353 . T C 5759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=11.2073;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-1.139;QD=22.32;ReadPosRankSum=1.678;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:1,256:258:99:5759,624,0 chrX 191458 . A T 6301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.344;QD=23.00;ReadPosRankSum=1.656;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:1,273:274:99:6301,661,0 chrX 191621 . A T 5771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=257;Dels=0.00;FS=8.859;HaplotypeScore=17.8661;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.196;QD=22.46;ReadPosRankSum=2.430;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:2,255:257:99:5771,613,0 chrX 194698 . G A 12532.01 filter AC=2;AF=1.00;AN=2;DP=533;Dels=0.00;FS=0.000;HaplotypeScore=32.5053;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.51;SB=-4.701e+03 GT:AD:DP:GQ:PL 1/1:0,532:533:99:12532,1307,0 chrX 194790 . G A 10544.01 filter AC=2;AF=1.00;AN=2;DP=455;Dels=0.00;FS=0.000;HaplotypeScore=22.5831;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.17;SB=-4.003e+03 GT:AD:DP:GQ:PL 1/1:0,452:455:99:10544,1085,0 chrX 194922 . A T 6981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=291;Dels=0.00;FS=2.942;HaplotypeScore=17.5618;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.691;QD=23.99;ReadPosRankSum=2.390;SB=-3.460e+03 GT:AD:DP:GQ:PL 1/1:2,289:291:99:6981,733,0 chrX 196039 . G A 6472.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=16.1615;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=22.71;SB=-3.233e+03 GT:AD:DP:GQ:PL 1/1:0,282:284:99:6472,679,0 chrX 196517 . C T 8127.01 PASS AC=2;AF=1.00;AN=2;DP=359;Dels=0.00;FS=0.000;HaplotypeScore=25.3724;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=22.64;SB=-4.428e+03 GT:AD:DP:GQ:PL 1/1:0,359:359:99:8127,859,0 chrX 196988 . C T 11626.01 filter AC=2;AF=1.00;AN=2;DP=511;Dels=0.00;FS=0.000;HaplotypeScore=28.6783;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.75;SB=-3.449e+03 GT:AD:DP:GQ:PL 1/1:0,508:511:99:11626,1243,0 chrX 197018 . G C 8954.01 filter AC=2;AF=1.00;AN=2;DP=409;Dels=0.00;FS=0.000;HaplotypeScore=19.7981;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.89;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,404:409:99:8954,988,0 chrX 197539 . T G 103.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=37.6746;MLEAC=1;MLEAF=0.500;MQ=33.62;MQ0=0;MQRankSum=2.414;QD=1.36;ReadPosRankSum=-0.304;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,7:76:89:133,0,89 chrX 197623 . A C 391.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;DP=407;Dels=0.00;FS=8.394;HaplotypeScore=18.7642;MLEAC=1;MLEAF=0.500;MQ=10.08;MQ0=344;MQRankSum=-0.681;QD=0.96;ReadPosRankSum=1.535;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:124,277:407:99:421,0,126 chrX 198299 . T C 350.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.231;DP=477;Dels=0.00;FS=3.647;HaplotypeScore=24.0256;MLEAC=1;MLEAF=0.500;MQ=15.87;MQ0=105;MQRankSum=-1.097;QD=0.73;ReadPosRankSum=2.076;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:353,122:477:99:380,0,2258 chrX 199170 . A C 13871.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.364;DP=638;DS;Dels=0.00;FS=17.615;HaplotypeScore=18.0310;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=57;MQRankSum=-0.901;QD=21.74;ReadPosRankSum=3.445;SB=-4.940e+03 GT:AD:DP:GQ:PL 1/1:4,630:638:99:13871,1554,0 chrX 199479 . C T 4115.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.932;DP=476;Dels=0.00;FS=1.716;HaplotypeScore=1.7834;MLEAC=1;MLEAF=0.500;MQ=23.86;MQ0=183;MQRankSum=1.248;QD=8.64;ReadPosRankSum=0.437;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:141,335:476:99:4115,0,1110 chrX 199482 . A T 3929.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.391;DP=489;Dels=0.00;FS=1.345;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=24.06;MQ0=179;MQRankSum=-0.025;QD=8.03;ReadPosRankSum=-0.436;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:141,348:489:99:3929,0,1210 chrX 199552 . C T 5488.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.679;DP=642;Dels=0.00;FS=0.350;HaplotypeScore=48.1768;MLEAC=1;MLEAF=0.500;MQ=23.97;MQ0=76;MQRankSum=0.105;QD=8.55;ReadPosRankSum=-0.898;SB=-1.023e+03 GT:AD:DP:GQ:PL 0/1:166,472:642:99:5488,0,1489 chrX 200079 . A G 363.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.449;DP=1000;DS;Dels=0.00;FS=1.125;HaplotypeScore=52.5864;MLEAC=1;MLEAF=0.500;MQ=45.32;MQ0=23;MQRankSum=1.480;QD=0.36;ReadPosRankSum=-0.950;SB=-1.480e+02 GT:AD:DP:GQ:PL 0/1:863,128:1000:99:393,0,17731 chrX 200165 . T C 738.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.358;DP=557;DS;Dels=0.00;FS=1.391;HaplotypeScore=26.5495;MLEAC=1;MLEAF=0.500;MQ=45.32;MQ0=22;MQRankSum=-0.443;QD=1.32;ReadPosRankSum=-0.083;SB=-3.340e+02 GT:AD:DP:GQ:PL 0/1:461,92:557:99:768,0,9754 chrX 200219 . A G 6073.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.971;DP=439;Dels=0.00;FS=18.085;HaplotypeScore=44.3975;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=49;MQRankSum=-4.460;QD=13.83;ReadPosRankSum=3.968;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:9,422:439:99:6073,675,0 chrX 200530 . G C,T 15756.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=890;Dels=0.00;FS=0.000;HaplotypeScore=38.3473;MLEAC=1,1;MLEAF=0.500,0.500;MQ=35.30;MQ0=49;QD=17.70;SB=-7.115e+03 GT:AD:DP:GQ:PL 1/2:0,750,135:890:99:15756,2672,1022,13083,0,12762 chrX 200573 . T C 777.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.971;DP=768;Dels=0.00;FS=14.040;HaplotypeScore=59.6518;MLEAC=1;MLEAF=0.500;MQ=25.74;MQ0=94;MQRankSum=7.322;QD=1.01;ReadPosRankSum=0.295;SB=-3.950e+02 GT:AD:DP:GQ:PL 0/1:655,110:768:99:807,0,7607 chrX 200588 . A T 514.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.454;DP=705;Dels=0.00;FS=8.662;HaplotypeScore=37.9674;MLEAC=1;MLEAF=0.500;MQ=22.16;MQ0=103;MQRankSum=5.146;QD=0.73;ReadPosRankSum=-0.820;SB=-2.960e+02 GT:AD:DP:GQ:PL 0/1:613,92:705:99:544,0,5625 chrX 201494 . T C 6266.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.402;DP=610;Dels=0.00;FS=0.638;HaplotypeScore=35.2233;MLEAC=1;MLEAF=0.500;MQ=22.10;MQ0=126;MQRankSum=-0.350;QD=10.27;ReadPosRankSum=0.392;SB=-6.550e+02 GT:AD:DP:GQ:PL 0/1:78,529:610:44:6266,0,44 chrX 203476 . A C 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=618;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=3.78;MQ0=555;QD=0.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:105,508:618:6:56,6,0 chrX 203772 . C G,T 83.07 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.579;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=8.4098;MLEAC=1,1;MLEAF=0.500,0.500;MQ=29.61;MQ0=2;MQRankSum=-1.448;QD=4.15;ReadPosRankSum=-0.579;SB=-2.602e+01 GT:AD:DP:GQ:PL 1/2:2,3,14:20:46:143,85,76,58,0,46 chrX 203773 . A T 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=15.5112;MLEAC=1;MLEAF=0.500;MQ=30.93;MQ0=1;MQRankSum=-0.488;QD=1.17;ReadPosRankSum=1.464;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:10,7:18:51:51,0,97 chrX 203775 . T G 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=6.7040;MLEAC=1;MLEAF=0.500;MQ=33.16;MQ0=0;MQRankSum=-0.550;QD=3.67;ReadPosRankSum=-0.550;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:6,3:9:63:63,0,64 chrX 203777 . T G 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=6.7040;MLEAC=1;MLEAF=0.500;MQ=33.24;MQ0=0;MQRankSum=-0.358;QD=5.50;ReadPosRankSum=-1.231;SB=-6.755e-03 GT:AD:DP:GQ:PL 0/1:3,3:6:38:63,0,38 chrX 203875 . C G 37.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.25;MQ0=1;MQRankSum=0.751;QD=3.71;ReadPosRankSum=-0.751;SB=-2.785e+01 GT:AD:DP:GQ:PL 0/1:1,9:10:16:67,0,16 chrX 203899 . A G 106.26 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.17;MQ0=5;QD=7.08;SB=-5.714e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:15:139,15,0 chrX 204119 . T A 78.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;DP=105;Dels=0.00;FS=14.258;HaplotypeScore=84.2585;MLEAC=1;MLEAF=0.500;MQ=25.33;MQ0=2;MQRankSum=1.683;QD=0.74;ReadPosRankSum=-0.352;SB=-1.249e+00 GT:AD:DP:GQ:PL 0/1:96,5:105:99:108,0,139 chrX 204142 . A C 55.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.487;DP=124;Dels=0.00;FS=15.721;HaplotypeScore=3.2499;MLEAC=1;MLEAF=0.500;MQ=24.06;MQ0=9;MQRankSum=0.324;QD=0.44;ReadPosRankSum=-1.063;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:12,109:124:40:85,0,40 chrX 204144 . A G 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.770;DP=131;Dels=0.00;FS=15.948;HaplotypeScore=8.0255;MLEAC=1;MLEAF=0.500;MQ=24.22;MQ0=10;MQRankSum=1.470;QD=0.39;ReadPosRankSum=-1.214;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:13,115:131:39:81,0,39 chrX 204181 . C T 596.21 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.293;DP=153;Dels=0.00;FS=16.163;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=29;MQRankSum=0.407;QD=3.90;ReadPosRankSum=0.114;SB=-2.194e-01 GT:AD:DP:GQ:PL 1/1:32,121:153:16:629,16,0 chrX 204184 . A G 558.10 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.908;DP=152;Dels=0.00;FS=16.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.92;MQ0=32;MQRankSum=1.009;QD=3.67;ReadPosRankSum=0.454;SB=-1.145e-01 GT:AD:DP:GQ:PL 1/1:35,117:152:19:591,19,0 chrX 204279 . T A 1003 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.47;MQ0=15;MQRankSum=-1.652;QD=6.92;ReadPosRankSum=1.652;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:16,129:145:99:1036,117,0 chrX 204292 . T G 1465 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=10;MQRankSum=-1.615;QD=9.27;ReadPosRankSum=1.404;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:11,147:158:99:1498,174,0 chrX 204309 . T A 2126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5011;MLEAC=2;MLEAF=1.00;MQ=34.15;MQ0=3;MQRankSum=-1.381;QD=13.12;ReadPosRankSum=1.491;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:4,158:162:99:2159,237,0 chrX 204339 . C G 3731.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.8426;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;QD=17.77;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:3731,408,0 chrX 204641 . A G 5787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=233;Dels=0.00;FS=2.989;HaplotypeScore=8.3450;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.468;QD=24.84;ReadPosRankSum=2.386;SB=-2.877e+03 GT:AD:DP:GQ:PL 1/1:2,228:233:99:5787,630,0 chrX 206537 . T C 6984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=19.0682;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=1.468;QD=22.97;ReadPosRankSum=1.698;SB=-3.731e+03 GT:AD:DP:GQ:PL 1/1:1,301:304:99:6984,765,0 chrX 206703 . T C 8664.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.611;DP=366;Dels=0.00;FS=11.627;HaplotypeScore=32.6087;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.723;QD=23.67;ReadPosRankSum=3.839;SB=-4.265e+03 GT:AD:DP:GQ:PL 1/1:5,358:366:99:8664,934,0 chrX 206787 . G A 7902.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.300;DP=381;Dels=0.00;FS=3.779;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.758;QD=20.74;ReadPosRankSum=-1.432;SB=-4.204e+03 GT:AD:DP:GQ:PL 1/1:1,374:381:99:7902,828,0 chrX 206790 . C T 7863.01 filter AC=2;AF=1.00;AN=2;DP=387;Dels=0.00;FS=0.000;HaplotypeScore=3.5573;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.32;SB=-4.004e+03 GT:AD:DP:GQ:PL 1/1:0,386:387:99:7863,841,0 chrX 206922 . C T 9571.01 filter AC=2;AF=1.00;AN=2;DP=405;Dels=0.00;FS=0.000;HaplotypeScore=30.0598;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.63;SB=-5.344e+03 GT:AD:DP:GQ:PL 1/1:0,404:405:99:9571,1003,0 chrX 207161 . G A 12584.01 filter AC=2;AF=1.00;AN=2;DP=538;Dels=0.00;FS=0.000;HaplotypeScore=49.6697;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.39;SB=-5.757e+03 GT:AD:DP:GQ:PL 1/1:0,534:538:99:12584,1363,0 chrX 207695 . T A 4791.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=21.7500;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=1;QD=21.48;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4791,508,0 chrX 208377 . G A 7057.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=8.8177;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=24.25;SB=-3.125e+03 GT:AD:DP:GQ:PL 1/1:0,291:291:99:7057,736,0 chrX 208398 . T C 6352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=282;Dels=0.00;FS=7.227;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.866;QD=22.52;ReadPosRankSum=2.406;SB=-3.065e+03 GT:AD:DP:GQ:PL 1/1:2,280:282:99:6352,708,0 chrX 208641 . C T 7437.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=17.9208;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.79;SB=-3.364e+03 GT:AD:DP:GQ:PL 1/1:0,300:300:99:7437,784,0 chrX 209220 . T C 7675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=326;Dels=0.00;FS=10.034;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.602;QD=23.54;ReadPosRankSum=2.923;SB=-3.994e+03 GT:AD:DP:GQ:PL 1/1:3,322:326:99:7675,832,0 chrX 209321 . T A 8908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.374;DP=342;Dels=0.00;FS=8.368;HaplotypeScore=22.1601;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.070;QD=26.05;ReadPosRankSum=3.369;SB=-3.887e+03 GT:AD:DP:GQ:PL 1/1:4,338:342:99:8908,925,0 chrX 209759 . G A 3784.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.13;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3784,400,0 chrX 209763 . T C 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=199;Dels=0.00;FS=2.996;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=1.160;QD=17.92;ReadPosRankSum=2.363;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:3567,399,0 chrX 209814 . C T 4584.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=11.0953;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=19.26;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:4584,478,0 chrX 209866 . A G 5420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.738;QD=22.21;ReadPosRankSum=1.718;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:1,243:244:99:5420,594,0 chrX 209880 . A T 5606.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.70;SB=-3.039e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5606,589,0 chrX 209951 . C T 6487.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=24.03;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:6487,664,0 chrX 210420 . C T 11629.01 filter AC=2;AF=1.00;AN=2;DP=493;Dels=0.00;FS=0.000;HaplotypeScore=27.8859;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.59;SB=-6.131e+03 GT:AD:DP:GQ:PL 1/1:0,492:493:99:11629,1231,0 chrX 210582 . T A 9503.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=391;Dels=0.00;FS=3.250;HaplotypeScore=7.1647;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=1.130;QD=24.30;ReadPosRankSum=1.714;SB=-5.081e+03 GT:AD:DP:GQ:PL 1/1:1,390:391:99:9503,988,0 chrX 210603 . G A 9471.01 filter AC=2;AF=1.00;AN=2;DP=409;Dels=0.00;FS=0.000;HaplotypeScore=16.1015;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.16;SB=-4.637e+03 GT:AD:DP:GQ:PL 1/1:0,408:409:99:9471,1021,0 chrX 210759 . G C 7421.01 PASS AC=2;AF=1.00;AN=2;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=29.3325;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.69;SB=-3.673e+03 GT:AD:DP:GQ:PL 1/1:0,323:327:99:7421,808,0 chrX 210834 . A G 7044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.662;DP=319;Dels=0.00;FS=7.940;HaplotypeScore=17.7241;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.858;QD=22.08;ReadPosRankSum=3.819;SB=-3.379e+03 GT:AD:DP:GQ:PL 1/1:5,313:319:99:7044,766,0 chrX 210923 . T C 6045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.090;DP=283;Dels=0.00;FS=10.738;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-0.364;QD=21.36;ReadPosRankSum=4.146;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:6,275:283:99:6045,672,0 chrX 210936 . T C 6858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.683;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=10.5806;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-1.385;QD=21.50;ReadPosRankSum=2.133;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:2,316:319:99:6858,729,0 chrX 211092 . A G 7372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=320;Dels=0.00;FS=3.946;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=0.162;QD=23.04;ReadPosRankSum=1.721;SB=-3.414e+03 GT:AD:DP:GQ:PL 1/1:1,319:320:99:7372,816,0 chrX 211104 . A G 6978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=334;Dels=0.00;FS=3.792;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=-1.447;QD=20.89;ReadPosRankSum=1.679;SB=-3.632e+03 GT:AD:DP:GQ:PL 1/1:1,328:334:99:6978,759,0 chrX 211107 . G T 7218.01 PASS AC=2;AF=1.00;AN=2;DP=344;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=20.98;SB=-3.876e+03 GT:AD:DP:GQ:PL 1/1:0,344:344:99:7218,769,0 chrX 211226 . A T 10620.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=463;Dels=0.00;FS=3.394;HaplotypeScore=28.9669;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.875;QD=22.94;ReadPosRankSum=1.672;SB=-5.464e+03 GT:AD:DP:GQ:PL 1/1:1,462:463:99:10620,1129,0 chrX 211287 . T C 10528.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.522;DP=471;Dels=0.00;FS=17.100;HaplotypeScore=30.0542;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-2.552;QD=22.35;ReadPosRankSum=4.432;SB=-5.206e+03 GT:AD:DP:GQ:PL 1/1:7,460:471:99:10528,1176,0 chrX 211319 . T C 9092.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=423;Dels=0.00;FS=3.003;HaplotypeScore=7.3206;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=0.670;QD=21.49;ReadPosRankSum=2.374;SB=-5.185e+03 GT:AD:DP:GQ:PL 1/1:2,421:423:99:9092,982,0 chrX 211322 . A G 8677.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.818;DP=423;Dels=0.00;FS=16.003;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=-0.247;QD=20.51;ReadPosRankSum=3.737;SB=-5.202e+03 GT:AD:DP:GQ:PL 1/1:5,417:423:99:8677,940,0 chrX 211343 . T C 7502.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=378;Dels=0.00;FS=6.050;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=-0.005;QD=19.85;ReadPosRankSum=2.891;SB=-4.799e+03 GT:AD:DP:GQ:PL 1/1:3,373:378:99:7502,825,0 chrX 211421 . C A 9914.01 filter AC=2;AF=1.00;AN=2;DP=433;Dels=0.00;FS=0.000;HaplotypeScore=16.5856;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.90;SB=-4.918e+03 GT:AD:DP:GQ:PL 1/1:0,432:433:99:9914,1027,0 chrX 211498 . T C 8547.01 filter AC=2;AF=1.00;AN=2;DP=392;Dels=0.00;FS=0.000;HaplotypeScore=26.1166;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.80;SB=-3.990e+03 GT:AD:DP:GQ:PL 1/1:0,385:392:99:8547,931,0 chrX 211574 . C T 7636.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=13.4673;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=24.24;SB=-3.681e+03 GT:AD:DP:GQ:PL 1/1:0,313:315:99:7636,793,0 chrX 211638 . A T 7435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=338;Dels=0.00;FS=9.025;HaplotypeScore=30.0330;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.892;QD=22.00;ReadPosRankSum=3.353;SB=-4.163e+03 GT:AD:DP:GQ:PL 1/1:4,334:338:99:7435,784,0 chrX 211764 . C T 5961.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=2.6884;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=22.24;SB=-3.696e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:5961,625,0 chrX 211845 . C A 4937.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.65;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4937,525,0 chrX 211863 . C T 5287.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=21.94;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,237:241:99:5287,556,0 chrX 211924 . T A 6076.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=10.9294;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.41;SB=-3.886e+03 GT:AD:DP:GQ:PL 1/1:0,312:312:99:6076,634,0 chrX 211937 . A G 5971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.114;DP=300;Dels=0.00;FS=14.952;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-1.142;QD=19.90;ReadPosRankSum=4.119;SB=-3.732e+03 GT:AD:DP:GQ:PL 1/1:6,294:300:99:5971,645,0 chrX 212108 . A G 7458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.615;DP=333;Dels=0.00;FS=0.000;HaplotypeScore=20.8858;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=1.381;QD=22.40;ReadPosRankSum=0.623;SB=-3.377e+03 GT:AD:DP:GQ:PL 1/1:2,331:333:99:7458,804,0 chrX 212471 . C T 6365.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.81;SB=-3.378e+03 GT:AD:DP:GQ:PL 1/1:0,279:279:99:6365,682,0 chrX 212671 . G A 6221.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=17.6908;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.49;SB=-3.374e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:6221,646,0 chrX 213139 . G A 7895.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.55;SB=-3.408e+03 GT:AD:DP:GQ:PL 1/1:0,306:309:99:7895,814,0 chrX 213175 . T C 8039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=12.7333;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=1.065;QD=24.00;ReadPosRankSum=1.543;SB=-3.908e+03 GT:AD:DP:GQ:PL 1/1:2,331:335:99:8039,868,0 chrX 213509 . C A 8914.01 filter AC=2;AF=1.00;AN=2;DP=365;Dels=0.00;FS=0.000;HaplotypeScore=28.1149;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.42;SB=-4.798e+03 GT:AD:DP:GQ:PL 1/1:0,364:365:99:8914,940,0 chrX 213641 . C T 6921.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=11.0341;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.12;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:6921,727,0 chrX 213827 . C T 5993.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=16.4822;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.66;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5993,625,0 chrX 213944 . C T 6215.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=15.8889;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.96;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:6215,661,0 chrX 214033 . C T 6674.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.92;SB=-3.380e+03 GT:AD:DP:GQ:PL 1/1:0,276:279:99:6674,697,0 chrX 214163 . A G 8942.01 filter AC=2;AF=1.00;AN=2;DP=368;Dels=0.00;FS=0.000;HaplotypeScore=13.5970;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.30;SB=-3.980e+03 GT:AD:DP:GQ:PL 1/1:0,364:368:99:8942,1002,0 chrX 214302 . T C 8849.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=382;Dels=0.00;FS=2.975;HaplotypeScore=22.2877;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.213;QD=23.16;ReadPosRankSum=2.404;SB=-4.403e+03 GT:AD:DP:GQ:PL 1/1:2,377:382:99:8849,967,0 chrX 214698 . A G 7103.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=16.9345;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.66;SB=-3.616e+03 GT:AD:DP:GQ:PL 1/1:0,286:288:99:7103,769,0 chrX 214997 . G A 8251.01 filter AC=2;AF=1.00;AN=2;DP=369;Dels=0.00;FS=0.000;HaplotypeScore=25.8165;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.36;SB=-3.657e+03 GT:AD:DP:GQ:PL 1/1:0,367:369:99:8251,859,0 chrX 215069 . C T 10188.01 filter AC=2;AF=1.00;AN=2;DP=398;Dels=0.00;FS=0.000;HaplotypeScore=10.9298;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.60;SB=-5.136e+03 GT:AD:DP:GQ:PL 1/1:0,398:398:99:10188,1058,0 chrX 215224 . A G 7351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=291;Dels=0.00;FS=3.304;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.327;QD=25.26;ReadPosRankSum=1.720;SB=-3.689e+03 GT:AD:DP:GQ:PL 1/1:1,290:291:99:7351,796,0 chrX 215249 . T C 8059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=325;Dels=0.00;FS=3.188;HaplotypeScore=16.3101;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=0.005;QD=24.80;ReadPosRankSum=1.711;SB=-4.026e+03 GT:AD:DP:GQ:PL 1/1:1,324:325:99:8059,868,0 chrX 215426 . A G 8957.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=382;Dels=0.00;FS=4.025;HaplotypeScore=19.7183;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.133;QD=23.45;ReadPosRankSum=1.686;SB=-4.038e+03 GT:AD:DP:GQ:PL 1/1:1,378:381:99:8957,996,0 chrX 215480 . G A 5359.01 SnpCluster AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=20.77;SB=-3.426e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5359,574,0 chrX 215481 . G A 5551.01 SnpCluster AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=21.68;SB=-3.470e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5551,574,0 chrX 215482 . T C 5360.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=255;Dels=0.00;FS=3.019;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=-0.159;QD=21.02;ReadPosRankSum=2.373;SB=-3.369e+03 GT:AD:DP:GQ:PL 1/1:2,253:255:99:5360,577,0 chrX 215637 . A G 7862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.577;DP=333;Dels=0.00;FS=7.894;HaplotypeScore=33.4209;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.394;QD=23.61;ReadPosRankSum=3.831;SB=-3.170e+03 GT:AD:DP:GQ:PL 1/1:5,327:333:99:7862,862,0 chrX 215951 . G A 7467.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=5.1500;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=23.56;SB=-4.058e+03 GT:AD:DP:GQ:PL 1/1:0,316:317:99:7467,775,0 chrX 215960 . C T 7565.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=5.4782;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.49;SB=-4.132e+03 GT:AD:DP:GQ:PL 1/1:0,322:322:99:7565,790,0 chrX 216038 . C T 7614.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=17.5023;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.80;SB=-3.808e+03 GT:AD:DP:GQ:PL 1/1:0,334:334:99:7614,817,0 chrX 216132 . A C 8112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=342;Dels=0.00;FS=3.074;HaplotypeScore=15.6500;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.407;QD=23.72;ReadPosRankSum=1.712;SB=-4.378e+03 GT:AD:DP:GQ:PL 1/1:1,340:342:99:8112,883,0 chrX 216313 . G A 9227.01 PASS AC=2;AF=1.00;AN=2;DP=359;Dels=0.00;FS=0.000;HaplotypeScore=16.1254;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.70;SB=-4.739e+03 GT:AD:DP:GQ:PL 1/1:0,358:359:99:9227,967,0 chrX 216509 . A G 9001.01 filter AC=2;AF=1.00;AN=2;DP=376;Dels=0.00;FS=0.000;HaplotypeScore=18.1028;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.94;SB=-4.737e+03 GT:AD:DP:GQ:PL 1/1:0,376:376:99:9001,982,0 chrX 217028 . C T 5726.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=17.4564;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.72;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,248:252:99:5726,616,0 chrX 217367 . T C 5287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=211;Dels=0.00;FS=7.701;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.107;QD=25.06;ReadPosRankSum=2.379;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:2,206:211:99:5287,568,0 chrX 218068 . A G 10707.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.709;DP=456;Dels=0.00;FS=12.130;HaplotypeScore=11.2205;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-2.183;QD=23.48;ReadPosRankSum=3.839;SB=-5.926e+03 GT:AD:DP:GQ:PL 1/1:5,449:456:99:10707,1162,0 chrX 218107 . G A 8592.01 filter AC=2;AF=1.00;AN=2;DP=408;Dels=0.00;FS=0.000;HaplotypeScore=22.8717;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=21.06;SB=-4.902e+03 GT:AD:DP:GQ:PL 1/1:0,403:408:99:8592,919,0 chrX 218143 . A G 6982.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.326;DP=372;Dels=0.00;FS=17.322;HaplotypeScore=12.9598;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;MQRankSum=-2.399;QD=18.77;ReadPosRankSum=4.503;SB=-4.577e+03 GT:AD:DP:GQ:PL 1/1:7,365:372:99:6982,748,0 chrX 218146 . T C 7022.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.216;DP=372;Dels=0.00;FS=4.722;HaplotypeScore=6.1290;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;MQRankSum=0.144;QD=18.88;ReadPosRankSum=3.396;SB=-4.399e+03 GT:AD:DP:GQ:PL 1/1:4,364:372:99:7022,748,0 chrX 218152 . C T 7334.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=363;Dels=0.00;FS=0.000;HaplotypeScore=7.2846;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=20.20;SB=-4.490e+03 GT:AD:DP:GQ:PL 1/1:0,363:363:99:7334,763,0 chrX 218206 . T C 8435.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.252;DP=401;Dels=0.00;FS=13.821;HaplotypeScore=30.3509;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.729;QD=21.03;ReadPosRankSum=3.300;SB=-4.368e+03 GT:AD:DP:GQ:PL 1/1:4,393:401:99:8435,916,0 chrX 218293 . C T 8913.01 filter AC=2;AF=1.00;AN=2;DP=413;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=21.58;SB=-4.997e+03 GT:AD:DP:GQ:PL 1/1:0,406:413:99:8913,952,0 chrX 218308 . G T 7081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=359;Dels=0.00;FS=0.000;HaplotypeScore=10.7755;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.424;QD=19.72;ReadPosRankSum=1.644;SB=-4.679e+03 GT:AD:DP:GQ:PL 1/1:1,354:359:99:7081,743,0 chrX 218340 . G A 6942.01 PASS AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=18.1904;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=20.60;SB=-4.504e+03 GT:AD:DP:GQ:PL 1/1:0,337:337:99:6942,730,0 chrX 218503 . G A 7023.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=25.9170;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.68;SB=-3.265e+03 GT:AD:DP:GQ:PL 1/1:0,324:324:99:7023,739,0 chrX 218719 . G A 8044.01 PASS AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=8.1566;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.79;SB=-4.397e+03 GT:AD:DP:GQ:PL 1/1:0,352:353:99:8044,841,0 chrX 218728 . G A 7885.01 filter AC=2;AF=1.00;AN=2;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=16.2723;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.78;SB=-4.658e+03 GT:AD:DP:GQ:PL 1/1:0,359:362:99:7885,823,0 chrX 218964 . A G 8799.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=407;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-2.765;QD=21.62;ReadPosRankSum=0.963;SB=-5.110e+03 GT:AD:DP:GQ:PL 1/1:3,403:407:99:8799,952,0 chrX 219051 . T C 7502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=342;Dels=0.00;FS=10.218;HaplotypeScore=22.7145;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.348;QD=21.94;ReadPosRankSum=2.961;SB=-3.852e+03 GT:AD:DP:GQ:PL 1/1:3,332:342:99:7502,817,0 chrX 219066 . T C 7087.01 PASS AC=2;AF=1.00;AN=2;DP=339;Dels=0.00;FS=0.000;HaplotypeScore=13.1198;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.91;SB=-4.484e+03 GT:AD:DP:GQ:PL 1/1:0,337:339:99:7087,772,0 chrX 219267 . G A 7330.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.19;SB=-3.646e+03 GT:AD:DP:GQ:PL 1/1:0,303:303:99:7330,772,0 chrX 219324 . T C 5615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=250;Dels=0.00;FS=3.733;HaplotypeScore=10.6890;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.601;QD=22.46;ReadPosRankSum=1.704;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:1,247:250:99:5615,633,0 chrX 219354 . A C 5128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=224;Dels=0.00;FS=5.729;HaplotypeScore=13.7039;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.185;QD=22.89;ReadPosRankSum=2.860;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:3,221:224:99:5128,573,0 chrX 219419 . C T 5121.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=18.0166;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.24;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5121,541,0 chrX 219452 . C T 5541.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.90;SB=-3.364e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5541,580,0 chrX 219542 . T C 6229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.118;DP=281;Dels=0.00;FS=5.219;HaplotypeScore=20.4647;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.713;QD=22.17;ReadPosRankSum=3.386;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:4,276:281:99:6229,670,0 chrX 219727 . T C 5744.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=12.1862;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.30;SB=-3.694e+03 GT:AD:DP:GQ:PL 1/1:0,281:283:99:5744,613,0 chrX 219735 . A G 5569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=286;Dels=0.00;FS=6.025;HaplotypeScore=9.5583;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.470;QD=19.47;ReadPosRankSum=2.968;SB=-3.347e+03 GT:AD:DP:GQ:PL 1/1:3,283:286:99:5569,612,0 chrX 219914 . G A 7524.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=11.2788;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.89;SB=-3.656e+03 GT:AD:DP:GQ:PL 1/1:0,315:315:99:7524,828,0 chrX 219997 . T C 4752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=250;Dels=0.00;FS=4.324;HaplotypeScore=15.2851;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.216;QD=19.01;ReadPosRankSum=1.718;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:1,248:250:99:4752,528,0 chrX 220270 . A G 7952.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=13.4688;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=25.24;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,315:315:99:7952,859,0 chrX 220326 . C A 5184.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=22.06;SB=-3.038e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5184,541,0 chrX 220333 . G C 4623.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.64;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4623,507,0 chrX 220447 . A G 5666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=303;Dels=0.00;FS=2.418;HaplotypeScore=6.0937;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;MQRankSum=-1.641;QD=18.70;ReadPosRankSum=2.944;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:3,299:303:99:5666,607,0 chrX 220448 . A G 5565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=4.5163;MLEAC=2;MLEAF=1.00;MQ=41.75;MQ0=0;MQRankSum=-0.600;QD=18.49;ReadPosRankSum=1.663;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,300:301:99:5565,609,0 chrX 220459 . C A 5235.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=3.4698;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;QD=18.37;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:5235,547,0 chrX 220469 . A T 4936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=7.5096;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;MQRankSum=-0.352;QD=18.21;ReadPosRankSum=1.233;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:3,268:271:99:4936,526,0 chrX 220502 . T C 4264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.300;DP=244;Dels=0.00;FS=16.010;HaplotypeScore=9.7720;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;MQRankSum=-1.083;QD=17.48;ReadPosRankSum=3.388;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:4,235:244:99:4264,465,0 chrX 220527 . T A 4215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=216;Dels=0.00;FS=3.112;HaplotypeScore=12.2157;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=-0.008;QD=19.51;ReadPosRankSum=1.716;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4215,447,0 chrX 220622 . G C 4219.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=21.10;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4219,456,0 chrX 220756 . T A 5917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.592;QD=24.86;ReadPosRankSum=1.702;SB=-3.108e+03 GT:AD:DP:GQ:PL 1/1:1,237:238:99:5917,634,0 chrX 220988 . T A 6368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=13.2178;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.338;QD=25.17;ReadPosRankSum=-0.669;SB=-3.184e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:6368,645,0 chrX 221102 . T C 5952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=253;Dels=0.00;FS=6.212;HaplotypeScore=15.9583;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.741;QD=23.53;ReadPosRankSum=2.430;SB=-3.179e+03 GT:AD:DP:GQ:PL 1/1:2,251:253:99:5952,643,0 chrX 221323 . C T 7514.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=13.5767;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.48;SB=-3.549e+03 GT:AD:DP:GQ:PL 1/1:0,306:307:99:7514,790,0 chrX 222067 . T G 5667.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=15.3587;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.23;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5667,613,0 chrX 222169 . T G 4897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.280;DP=214;Dels=0.00;FS=8.410;HaplotypeScore=16.4245;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.520;QD=22.88;ReadPosRankSum=3.395;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:4,209:214:99:4897,531,0 chrX 222376 . T C 7610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=312;Dels=0.00;FS=2.966;HaplotypeScore=16.7540;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.130;QD=24.39;ReadPosRankSum=2.410;SB=-3.807e+03 GT:AD:DP:GQ:PL 1/1:2,310:312:99:7610,826,0 chrX 223295 . T C 4323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=233;Dels=0.00;FS=7.949;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.852;QD=18.55;ReadPosRankSum=2.385;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:2,227:233:99:4323,465,0 chrX 223465 . C T 5175.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=23.52;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:5175,544,0 chrX 223746 . C T 8287.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=17.5426;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.42;SB=-4.069e+03 GT:AD:DP:GQ:PL 1/1:0,325:326:99:8287,856,0 chrX 225114 . C T 8117.01 filter AC=2;AF=1.00;AN=2;DP=364;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.30;SB=-4.448e+03 GT:AD:DP:GQ:PL 1/1:0,360:364:99:8117,871,0 chrX 225225 . A G 5167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=260;Dels=0.00;FS=5.249;HaplotypeScore=13.8406;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.710;QD=19.87;ReadPosRankSum=2.973;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:3,257:260:99:5167,559,0 chrX 225521 . A G 4276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.4144;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.070;QD=24.43;ReadPosRankSum=1.692;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4276,456,0 chrX 225601 . A G 5017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.164;DP=216;Dels=0.00;FS=3.019;HaplotypeScore=16.8355;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.280;QD=23.23;ReadPosRankSum=2.415;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:5017,546,0 chrX 225914 . T C 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=121;Dels=0.00;FS=3.045;HaplotypeScore=19.7058;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.431;QD=15.36;ReadPosRankSum=2.408;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:2,115:121:99:1892,210,0 chrX 226023 . G A 3680.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.5662;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=22.58;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3680,385,0 chrX 226060 . G T 3030 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.9656;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.61;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3063,324,0 chrX 226353 . T C 2652 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.26;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2685,297,0 chrX 226665 . C T 2028 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.86;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2061,219,0 chrX 226843 . T C 1880 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.1980;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.65;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1913,207,0 chrX 226899 . A G 2367 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.21;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2400,270,0 chrX 227070 . A G 2150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.441;QD=19.91;ReadPosRankSum=1.538;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2183,240,0 chrX 227303 . A T 3464.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=25.47;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3464,358,0 chrX 227829 . T C 4181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=195;Dels=0.00;FS=6.362;HaplotypeScore=16.0521;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.208;QD=21.44;ReadPosRankSum=2.399;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4181,465,0 chrX 227961 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.9200;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.70;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3722,388,0 chrX 228044 . A T 3949.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.5355;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.23;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3949,417,0 chrX 228198 . T C 4056.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.1121;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.43;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4056,438,0 chrX 228680 . G A 1873 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=24.32;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1906,198,0 chrX 228732 . A G 1550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;MQRankSum=0.366;QD=21.83;ReadPosRankSum=1.683;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1583,177,0 chrX 228740 . T C 1666 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=21.92;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1699,183,0 chrX 228756 . A G 1792 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=22.12;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1825,198,0 chrX 228793 . A T 1760 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=18.92;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1793,192,0 chrX 228805 . G T 1998 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.39;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2031,216,0 chrX 228848 . C T 1938 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.53;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1971,213,0 chrX 228996 . T A 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=107;Dels=0.00;FS=2.602;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.357;QD=27.56;ReadPosRankSum=2.404;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2982,306,0 chrX 229175 . C T 2620 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2653,276,0 chrX 229547 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.84;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3212,336,0 chrX 230069 . T C 4989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=214;Dels=0.00;FS=3.072;HaplotypeScore=4.4443;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.301;QD=23.31;ReadPosRankSum=1.716;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4989,540,0 chrX 230256 . T G 4819.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=20.68;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4819,531,0 chrX 230257 . C T 4959.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=21.19;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4959,526,0 chrX 230372 . C T 4506.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.62;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4506,469,0 chrX 230438 . A G 4469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.9772;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.062;QD=20.50;ReadPosRankSum=2.382;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4469,483,0 chrX 230464 . G C 3801.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=18.91;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,196:201:99:3801,417,0 chrX 230470 . T C 3835.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=19.18;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3835,414,0 chrX 230666 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.0295;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.90;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3021,318,0 chrX 230768 . G A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.96;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3283,345,0 chrX 230867 . T C 2806 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2839,309,0 chrX 231314 . A G 5379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.370;QD=24.45;ReadPosRankSum=1.638;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:5379,588,0 chrX 231417 . T G 4465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=202;Dels=0.00;FS=10.715;HaplotypeScore=12.1662;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.460;QD=22.10;ReadPosRankSum=2.268;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:3,196:202:99:4465,475,0 chrX 231525 . C T 3027 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.1998;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.62;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3060,333,0 chrX 231610 . C A 3834.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.6228;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.11;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3834,403,0 chrX 231816 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9583;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.34;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3451,363,0 chrX 232152 . T C 4378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=185;Dels=0.00;FS=12.154;HaplotypeScore=16.5442;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.579;QD=23.66;ReadPosRankSum=2.951;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:3,181:185:99:4378,474,0 chrX 232272 . T C 2090 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.00;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2123,234,0 chrX 232348 . T C 3024 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.40;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3057,333,0 chrX 232467 . C T 2543 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.55;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2576,270,0 chrX 232656 . A G 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.1044;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-1.039;QD=21.99;ReadPosRankSum=1.699;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2364,258,0 chrX 232663 . G A 2300 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.18;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2333,255,0 chrX 233083 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.08;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3516,369,0 chrX 233256 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.44;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3399,357,0 chrX 233289 . A G 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=3.179;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.304;QD=22.49;ReadPosRankSum=1.706;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2979,321,0 chrX 233472 . G A 3010 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.47;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3043,333,0 chrX 233503 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.79;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3559,370,0 chrX 233551 . C A 4287.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.52;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4287,445,0 chrX 233724 . C G 2706 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.66;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2739,309,0 chrX 233808 . T C 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=3.210;HaplotypeScore=9.8475;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=-0.856;QD=22.15;ReadPosRankSum=1.693;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3965,438,0 chrX 233920 . A G 2393 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=116;Dels=0.00;FS=5.943;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=-0.922;QD=20.63;ReadPosRankSum=2.905;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2426,267,0 chrX 233923 . G A 2390 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=21.73;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2423,255,0 chrX 233924 . A C 2313 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=20.47;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2346,255,0 chrX 234309 . G A 2681 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.94;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2714,285,0 chrX 234627 . G T 3171 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.4052;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=22.98;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3204,333,0 chrX 234644 . G A 3124 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.47;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,135:139:99:3157,325,0 chrX 234695 . G A 2405 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.38;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2438,255,0 chrX 234705 . C T 2520 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.54;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2553,264,0 chrX 234824 . G A 3680.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.86;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3680,396,0 chrX 235091 . G A 4455.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.8381;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=25.17;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4455,463,0 chrX 235232 . G A 3175 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.2019;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=17.84;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3208,339,0 chrX 235235 . A G 3197 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=18.37;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3230,354,0 chrX 235355 . T C 6051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.973;DP=262;Dels=0.00;FS=2.435;HaplotypeScore=9.8009;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.601;QD=23.10;ReadPosRankSum=2.926;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:3,256:262:99:6051,655,0 chrX 235362 . G T 5941.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=23.96;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5941,616,0 chrX 235475 . T C 6661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=304;Dels=0.00;FS=7.331;HaplotypeScore=28.3378;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.295;QD=21.91;ReadPosRankSum=2.361;SB=-3.282e+03 GT:AD:DP:GQ:PL 1/1:2,302:304:99:6661,727,0 chrX 235604 . A C 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=19.2368;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-0.377;QD=19.02;ReadPosRankSum=1.665;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:3956,426,0 chrX 235988 . T C 6348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=17.1029;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.104;QD=25.09;ReadPosRankSum=1.718;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:1,249:253:99:6348,682,0 chrX 236081 . A G 4790.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.92;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4790,525,0 chrX 236421 . T C 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=145.9654;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=1.712;QD=21.89;ReadPosRankSum=1.692;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3809,408,0 chrX 236523 . G A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.9101;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=21.85;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3846,403,0 chrX 236615 . C A 4807.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.9661;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=24.16;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4807,502,0 chrX 236829 . G A 3842.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.6766;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=21.58;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3842,403,0 chrX 236856 . C T 2885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=170;Dels=0.00;FS=4.234;HaplotypeScore=11.4706;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=0.280;QD=16.97;ReadPosRankSum=-1.545;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,166:170:99:2918,315,0 chrX 236901 . T A 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=204;Dels=0.00;FS=4.065;HaplotypeScore=3.1021;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;MQRankSum=0.119;QD=14.34;ReadPosRankSum=1.664;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:2959,315,0 chrX 236905 . A G 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=6.4672;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;MQRankSum=-1.516;QD=13.63;ReadPosRankSum=1.699;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,207:211:99:2908,318,0 chrX 236912 . A G 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.9915;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=0.133;QD=14.58;ReadPosRankSum=1.654;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:3256,357,0 chrX 236974 . T C 4072.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=17.78;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4072,459,0 chrX 237017 . A C 2527 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=0;QD=15.79;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2560,279,0 chrX 237020 . G A 2430 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=0;QD=15.68;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2463,261,0 chrX 237032 . G C 2030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.224;DP=151;Dels=0.00;FS=3.565;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=0;MQRankSum=-1.524;QD=13.44;ReadPosRankSum=-1.386;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:2063,211,0 chrX 237035 . T G 2058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=3.388;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;MQRankSum=-0.866;QD=14.29;ReadPosRankSum=1.684;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2091,228,0 chrX 237161 . C T 4032.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=23.31;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4032,429,0 chrX 237213 . T C 3803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=153;Dels=0.00;FS=2.928;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-2.138;QD=24.86;ReadPosRankSum=2.417;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:2,148:153:99:3803,411,0 chrX 237307 . C T 4307.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.0239;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=25.04;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4307,445,0 chrX 237366 . G A 4420.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.2761;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.29;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4420,468,0 chrX 237403 . G A 4191.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.81;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4191,444,0 chrX 237551 . G A 3802.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=18.28;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:3802,405,0 chrX 237670 . A G 4468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=204;Dels=0.00;FS=3.437;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.179;QD=21.90;ReadPosRankSum=1.715;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4468,480,0 chrX 237691 . G A 4427.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.02;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4427,460,0 chrX 237740 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=19.23;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3789,414,0 chrX 237747 . G A 3706.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.6640;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=18.53;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3706,385,0 chrX 237784 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.9822;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=17.45;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:3508,369,0 chrX 237787 . C T 3542.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=16.95;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:3542,372,0 chrX 237988 . A G 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.733;DP=145;Dels=0.00;FS=4.892;HaplotypeScore=11.6634;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;MQRankSum=1.176;QD=20.68;ReadPosRankSum=3.711;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:5,140:145:99:3032,330,0 chrX 238042 . T C 3075 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=22.95;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3108,339,0 chrX 238262 . C T 3026 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6909;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3059,318,0 chrX 238334 . A G 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.913;QD=22.81;ReadPosRankSum=1.662;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3398,363,0 chrX 238356 . G C 3086 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.57;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3119,342,0 chrX 238393 . T C 3328.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.11;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3328,363,0 chrX 238463 . T C 5172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.922;QD=24.63;ReadPosRankSum=2.403;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:5172,556,0 chrX 238660 . G C 5802.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.68;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:5802,633,0 chrX 238732 . A G 4417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=211;Dels=0.00;FS=2.687;HaplotypeScore=12.7702;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-1.339;QD=20.93;ReadPosRankSum=2.414;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:2,208:211:99:4417,486,0 chrX 238738 . A G 4389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.609;DP=214;Dels=0.00;FS=7.958;HaplotypeScore=6.3195;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-2.089;QD=20.51;ReadPosRankSum=3.477;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:5,208:214:99:4389,477,0 chrX 238867 . T C 4313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=190;Dels=0.00;FS=3.424;HaplotypeScore=17.1639;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.602;QD=22.70;ReadPosRankSum=1.677;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4313,471,0 chrX 238933 . T C 3492.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.6691;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=21.69;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3492,378,0 chrX 238948 . A G 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=0.269;QD=19.73;ReadPosRankSum=1.711;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3210,354,0 chrX 238968 . A G 2689 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=19.49;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2722,300,0 chrX 239145 . C T 2633 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.76;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2666,282,0 chrX 239157 . A T 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.091;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=0.642;QD=21.87;ReadPosRankSum=1.700;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2395,255,0 chrX 239361 . C T 3490.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.9035;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=25.11;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3490,366,0 chrX 239387 . C G 3441.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.73;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3441,372,0 chrX 239807 . T C 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=129;Dels=0.00;FS=9.668;HaplotypeScore=14.4986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.262;QD=22.63;ReadPosRankSum=2.897;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:3,124:129:99:2952,321,0 chrX 239917 . C T 3615.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=24.93;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3615,376,0 chrX 239955 . C T 2637 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.9053;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=19.98;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2670,282,0 chrX 239959 . T C 2546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=0.595;QD=19.00;ReadPosRankSum=1.706;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,130:134:99:2579,279,0 chrX 240040 . A G 3053 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.96;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3086,336,0 chrX 240082 . C A 3785.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.0087;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.40;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3785,402,0 chrX 240199 . A G 3275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=4.025;HaplotypeScore=13.5910;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=1.492;QD=22.59;ReadPosRankSum=1.708;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3275,369,0 chrX 240364 . T G 4051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.253;QD=23.69;ReadPosRankSum=1.712;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4051,450,0 chrX 240400 . A C 4372.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.6971;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.26;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4372,486,0 chrX 240656 . C T 3029 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.03;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3062,321,0 chrX 240695 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.419;DP=168;Dels=0.00;FS=3.170;HaplotypeScore=4.3155;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=0.751;QD=22.35;ReadPosRankSum=1.482;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3754,394,0 chrX 240712 . G T 4052.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.55;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4052,432,0 chrX 240782 . A G 3007 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.95;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3040,330,0 chrX 240847 . T C 3199 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.70;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3232,351,0 chrX 241109 . A G 2997 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3030,327,0 chrX 241420 . A G 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=124;Dels=0.00;FS=2.954;HaplotypeScore=5.8135;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.466;QD=22.74;ReadPosRankSum=2.271;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2853,309,0 chrX 242162 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-0.475;QD=23.29;ReadPosRankSum=1.661;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3401,369,0 chrX 242169 . G A 3602.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.85;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3602,379,0 chrX 242444 . A G 4772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=203;Dels=0.00;FS=3.533;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.032;QD=23.51;ReadPosRankSum=1.647;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4772,513,0 chrX 242557 . A C 6169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=253;Dels=0.00;FS=3.063;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.028;QD=24.38;ReadPosRankSum=1.704;SB=-3.224e+03 GT:AD:DP:GQ:PL 1/1:1,250:253:99:6169,678,0 chrX 242684 . G A 5160.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.78;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5160,547,0 chrX 242776 . G A 4227.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=16.6011;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4227,445,0 chrX 242936 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.9055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3266,351,0 chrX 243812 . C A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.8175;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3721,391,0 chrX 243941 . A G 3379.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.14;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3379,369,0 chrX 244181 . C T 4395.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4395,463,0 chrX 244406 . C T 9087.01 filter AC=2;AF=1.00;AN=2;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=24.3584;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=25.10;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,358:362:99:9087,967,0 chrX 244474 . G A 10186.01 filter AC=2;AF=1.00;AN=2;DP=398;Dels=0.00;FS=0.000;HaplotypeScore=21.4389;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=25.59;SB=-3.890e+03 GT:AD:DP:GQ:PL 1/1:0,395:398:99:10186,1072,0 chrX 244609 . G A 10213.01 filter AC=2;AF=1.00;AN=2;DP=420;Dels=0.00;FS=0.000;HaplotypeScore=18.4286;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=24.32;SB=-4.235e+03 GT:AD:DP:GQ:PL 1/1:0,418:420:99:10213,1055,0 chrX 244637 . T C 9439.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.432;DP=421;Dels=0.00;FS=9.837;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-0.894;QD=22.42;ReadPosRankSum=2.374;SB=-3.574e+03 GT:AD:DP:GQ:PL 1/1:2,419:421:99:9439,1024,0 chrX 244650 . A G 8829.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=422;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.290;QD=20.92;ReadPosRankSum=2.426;SB=-3.451e+03 GT:AD:DP:GQ:PL 1/1:2,417:422:99:8829,958,0 chrX 244689 . G A 7234.01 filter AC=2;AF=1.00;AN=2;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=26.1426;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=19.98;SB=-3.158e+03 GT:AD:DP:GQ:PL 1/1:0,358:362:99:7234,760,0 chrX 244726 . A G 7224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=315;Dels=0.00;FS=2.689;HaplotypeScore=20.0130;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.354;QD=22.93;ReadPosRankSum=2.356;SB=-3.088e+03 GT:AD:DP:GQ:PL 1/1:2,313:315:99:7224,775,0 chrX 244871 . A G 6007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.589;DP=267;Dels=0.00;FS=28.004;HaplotypeScore=29.9812;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.450;QD=22.50;ReadPosRankSum=4.990;SB=-3.067e+03 GT:AD:DP:GQ:PL 1/1:9,257:267:99:6007,657,0 chrX 245030 . A G 5701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=245;Dels=0.00;FS=6.069;HaplotypeScore=4.6362;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.791;QD=23.27;ReadPosRankSum=2.906;SB=-3.212e+03 GT:AD:DP:GQ:PL 1/1:3,242:245:99:5701,616,0 chrX 245037 . G A 5517.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=1.8614;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=24.41;SB=-3.143e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5517,574,0 chrX 245341 . G A 873 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=17.82;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:96:906,96,0 chrX 245368 . C A 1413 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=20.19;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1446,153,0 chrX 245399 . T A 1832 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=21.81;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1865,192,0 chrX 245416 . T G 1518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=-0.507;QD=18.51;ReadPosRankSum=1.648;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1551,174,0 chrX 245436 . T C 1450 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.66;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1483,159,0 chrX 245568 . C T 3915.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=24.62;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3915,414,0 chrX 245734 . T C 4840.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=17.0491;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.41;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4840,534,0 chrX 245918 . C T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.4410;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.07;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3434,355,0 chrX 246253 . G A 1146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.147;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.851;QD=19.10;ReadPosRankSum=-1.439;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1179,101,0 chrX 246266 . G A 1128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.003;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.3413;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=1.672;QD=19.12;ReadPosRankSum=0.821;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1161,123,0 chrX 246303 . G T 1735 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.24;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1768,183,0 chrX 246321 . C T 1815 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.35;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1848,198,0 chrX 246407 . G A 1879 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.11;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1912,207,0 chrX 246420 . C T 2179 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.79;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2212,234,0 chrX 246451 . C G 2249 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.7131;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.22;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2282,249,0 chrX 246591 . C T 2865 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.22;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2898,306,0 chrX 246614 . C G 2945 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.89;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2978,324,0 chrX 246652 . C T 3595.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.7579;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.79;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3595,376,0 chrX 247029 . A G 2742 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.94;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2775,303,0 chrX 247088 . C T 2630 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2663,282,0 chrX 247175 . A T 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.731;DP=132;Dels=0.00;FS=28.202;HaplotypeScore=42.6435;MLEAC=1;MLEAF=0.500;MQ=56.04;MQ0=0;MQRankSum=1.786;QD=0.33;ReadPosRankSum=4.173;SB=-1.174e+03 GT:AD:DP:GQ:PL 0/1:22,110:132:40:73,0,40 chrX 247233 . A G 2956 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=22.74;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2989,330,0 chrX 247320 . T A 3786.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=24.58;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3786,397,0 chrX 247356 . A G 3794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.211;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=0.682;QD=24.48;ReadPosRankSum=1.687;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3794,417,0 chrX 247484 . T C 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.323;QD=20.14;ReadPosRankSum=1.715;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4128,450,0 chrX 247487 . T C 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.1507;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.767;QD=20.15;ReadPosRankSum=1.680;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4070,435,0 chrX 247560 . A G 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=163;Dels=0.00;FS=2.977;HaplotypeScore=14.5220;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=0.114;QD=19.31;ReadPosRankSum=2.389;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3181,357,0 chrX 247585 . G A 3293.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.66;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3293,357,0 chrX 247668 . G A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.38;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3760,388,0 chrX 247893 . A G 2896 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8278;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2929,327,0 chrX 247938 . T G 2812 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2845,315,0 chrX 247987 . T C 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=3.656;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.549;QD=24.71;ReadPosRankSum=1.704;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3072,336,0 chrX 248378 . G C 3596.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.05;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3596,384,0 chrX 248379 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=161;Dels=0.00;FS=5.266;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=1.228;QD=21.96;ReadPosRankSum=1.622;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,157:161:99:3535,393,0 chrX 248611 . A G 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=127;Dels=0.00;FS=9.406;HaplotypeScore=10.5316;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=1.142;QD=24.06;ReadPosRankSum=2.391;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:3088,336,0 chrX 248820 . G A 2239 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.12;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2272,240,0 chrX 248872 . C T 2498 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=20.99;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2531,264,0 chrX 248893 . C A 2339 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.88;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2372,252,0 chrX 248957 . G A 2124 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.87;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2157,228,0 chrX 249201 . T C 4027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.676;DP=167;Dels=0.00;FS=7.547;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.023;QD=24.11;ReadPosRankSum=3.770;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:5,162:167:99:4027,432,0 chrX 249343 . G A 3413.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3413,363,0 chrX 249801 . G A 3966.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.5887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.94;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3966,415,0 chrX 249923 . T C 4132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=187;Dels=0.00;FS=9.604;HaplotypeScore=15.1633;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=1.446;QD=22.10;ReadPosRankSum=2.930;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:4132,456,0 chrX 249990 . A G 4305.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.7587;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.78;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4305,471,0 chrX 250151 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=20.50;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3280,360,0 chrX 250158 . C T 3038 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=19.99;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3071,327,0 chrX 250174 . G A 2595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=-1.361;QD=18.40;ReadPosRankSum=-0.371;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2628,257,0 chrX 250185 . A G 2485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=0.012;QD=17.50;ReadPosRankSum=1.658;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2518,276,0 chrX 250241 . A G 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.406;QD=21.46;ReadPosRankSum=1.712;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3798,417,0 chrX 250329 . G A 4667.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=25.23;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4667,481,0 chrX 250353 . G A 4020.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.3548;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=23.51;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4020,420,0 chrX 250419 . A G 3581.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.1452;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=21.44;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3581,387,0 chrX 250428 . A G 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=181;Dels=0.00;FS=5.237;HaplotypeScore=15.2476;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=1.360;QD=19.96;ReadPosRankSum=1.693;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,176:181:99:3612,405,0 chrX 250812 . C T 4130.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.6259;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.03;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4130,436,0 chrX 251498 . A G 2973 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.39;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3006,327,0 chrX 251581 . A G 2699 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.47;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2732,294,0 chrX 251673 . G A 2651 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.25;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2684,282,0 chrX 251780 . A G 2706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.690;DP=133;Dels=0.00;FS=5.298;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-2.599;QD=20.35;ReadPosRankSum=2.765;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2739,278,0 chrX 251884 . T C 4031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=165;Dels=0.00;FS=2.636;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.229;QD=24.43;ReadPosRankSum=2.420;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:4031,438,0 chrX 252286 . A G 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=132;Dels=0.00;FS=3.027;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.481;QD=24.86;ReadPosRankSum=2.412;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3281,354,0 chrX 252393 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=24.53;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3247,342,0 chrX 252496 . G A 2562 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=21.71;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2595,270,0 chrX 252499 . C G 2214 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=19.42;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2247,246,0 chrX 252564 . T C 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=-0.123;QD=19.35;ReadPosRankSum=1.705;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2491,267,0 chrX 252565 . G A 2531 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=19.93;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2564,267,0 chrX 252640 . G C 2573 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=20.26;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2606,291,0 chrX 252649 . G A 2684 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=20.65;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2717,282,0 chrX 252650 . G A 2630 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=20.39;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2663,282,0 chrX 252688 . A G 2430 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.4855;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=17.61;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2463,276,0 chrX 252733 . A G 2433 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=21.34;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2466,276,0 chrX 252960 . G A 4015.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.7489;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=20.80;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4015,418,0 chrX 252967 . A G 3851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=5.107;HaplotypeScore=5.7855;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-1.400;QD=20.48;ReadPosRankSum=1.695;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3851,417,0 chrX 252997 . G C 3521.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.0084;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=18.24;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3521,396,0 chrX 253125 . A G 5005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-0.494;QD=22.65;ReadPosRankSum=1.716;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:5005,540,0 chrX 253186 . G A 4753.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=23.19;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4753,510,0 chrX 253269 . A G 4937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=230;Dels=0.00;FS=5.448;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=1.170;QD=21.47;ReadPosRankSum=2.952;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:3,227:230:99:4937,531,0 chrX 253312 . G A 4265.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.0755;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.43;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4265,451,0 chrX 253339 . G A 3636.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.1230;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.64;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3636,379,0 chrX 253378 . G A 2891 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=18.30;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2924,312,0 chrX 253393 . G A 2673 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=17.82;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2706,288,0 chrX 253405 . G A 2785 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=17.97;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2818,294,0 chrX 253426 . T A 2397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=164;Dels=0.00;FS=2.995;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;MQRankSum=-0.457;QD=14.62;ReadPosRankSum=2.420;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:2430,261,0 chrX 253440 . G A 2808 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=15.10;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:2841,297,0 chrX 253704 . A T 5710.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=17.4782;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.89;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5710,598,0 chrX 254075 . A G 4191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=181;Dels=0.00;FS=2.975;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.981;QD=23.15;ReadPosRankSum=2.312;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:4191,456,0 chrX 254119 . A G 3193 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.31;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3226,351,0 chrX 254247 . T C 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-0.251;QD=24.35;ReadPosRankSum=1.682;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3360,363,0 chrX 254489 . G A 2497 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=19.66;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2530,261,0 chrX 254492 . T C 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=3.369;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=-1.045;QD=18.50;ReadPosRankSum=1.705;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2383,258,0 chrX 254503 . G A 2618 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=20.29;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2651,282,0 chrX 255480 . C T 3894.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.51;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3894,406,0 chrX 255496 . C A 3932.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.97;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3932,426,0 chrX 255752 . C T 3617.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.80;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3617,379,0 chrX 256372 . T C 5026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-1.256;QD=23.71;ReadPosRankSum=1.716;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:5026,549,0 chrX 256394 . G T 5113.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.70;SB=-2.810e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5113,529,0 chrX 256549 . G A 5547.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.2264;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.65;SB=-3.013e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5547,583,0 chrX 256883 . C A 3789.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.65;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3789,420,0 chrX 256957 . A G 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=-1.471;QD=19.50;ReadPosRankSum=1.708;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2880,309,0 chrX 256964 . A T 3013 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=21.22;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3046,324,0 chrX 256990 . G A 3309.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.4858;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.77;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3309,351,0 chrX 257035 . G A 4266.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.94;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4266,448,0 chrX 257102 . G A 4751.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=25.41;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4751,502,0 chrX 257445 . G T 4133.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.5568;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4133,436,0 chrX 257602 . C A 4132.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4132,430,0 chrX 257783 . A C 3919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.263;DP=171;Dels=0.00;FS=13.844;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-1.980;QD=22.92;ReadPosRankSum=3.408;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:4,165:171:99:3919,435,0 chrX 258022 . T A 3977.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5983;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=23.39;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3977,435,0 chrX 258025 . T C 3923.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=23.21;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3923,429,0 chrX 258142 . G A 4992.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=18.2920;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.49;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4992,523,0 chrX 258292 . G T 2909 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.27;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2942,303,0 chrX 258301 . T C 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=143;Dels=0.00;FS=10.918;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-0.539;QD=19.74;ReadPosRankSum=2.936;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:2856,309,0 chrX 258370 . A G 3136 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.4473;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.50;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3169,354,0 chrX 259162 . A C 2199 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.35;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2232,246,0 chrX 259182 . C T 1825 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=18.25;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1858,195,0 chrX 259194 . C A 1949 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=17.10;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1982,204,0 chrX 259357 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=24.52;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3245,342,0 chrX 259504 . G A 3177 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.02;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3210,336,0 chrX 260294 . T C 2765 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=14.18;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:2798,303,0 chrX 260320 . T C 2981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=196;Dels=0.01;FS=7.771;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.434;QD=15.21;ReadPosRankSum=2.424;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:3014,333,0 chrX 260357 . G C 3363.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.2103;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=19.55;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,168:172:99:3363,360,0 chrX 260440 . G A 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.304;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.9713;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.170;QD=23.18;ReadPosRankSum=1.147;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3430,338,0 chrX 260621 . C T 2978 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6849;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=18.61;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3011,312,0 chrX 260627 . A T 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.273;DP=160;Dels=0.00;FS=15.621;HaplotypeScore=8.7048;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-2.104;QD=18.29;ReadPosRankSum=3.339;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:4,156:160:99:2960,309,0 chrX 260920 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.51;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3185,339,0 chrX 261192 . A G 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.000;QD=24.40;ReadPosRankSum=1.699;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2571,279,0 chrX 261296 . C A 2756 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2789,291,0 chrX 261413 . A G 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=131;Dels=0.00;FS=8.964;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.591;QD=24.46;ReadPosRankSum=2.055;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3237,329,0 chrX 261474 . C G 3195 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.58;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3228,345,0 chrX 261812 . A G 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7918;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.451;QD=22.80;ReadPosRankSum=1.670;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2564,282,0 chrX 261829 . G A 2578 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.23;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2611,273,0 chrX 261902 . C T 2730 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.37;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2763,297,0 chrX 262115 . A G 2934 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.92;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2967,321,0 chrX 262236 . G A 2835 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=20.54;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2868,315,0 chrX 262403 . A T 3160 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3193,339,0 chrX 262565 . T C 2888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=140;Dels=0.00;FS=6.567;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.588;QD=20.63;ReadPosRankSum=2.415;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2921,321,0 chrX 262898 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=138;Dels=0.00;FS=6.111;HaplotypeScore=7.4411;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.375;QD=23.43;ReadPosRankSum=2.949;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3265,354,0 chrX 263201 . A G 2120 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2153,231,0 chrX 263508 . C T 2709 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2742,291,0 chrX 263540 . C A 2967 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.32;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3000,324,0 chrX 263594 . C T 2778 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.58;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2811,297,0 chrX 263633 . G A 2617 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.56;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2650,282,0 chrX 263687 . G A 3353.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.60;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3353,349,0 chrX 263723 . G T 3472.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.62;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3472,369,0 chrX 263882 . A C 2735 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.78;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2768,303,0 chrX 264194 . T C 3660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=163;Dels=0.00;FS=3.147;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.721;QD=22.45;ReadPosRankSum=1.689;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3660,399,0 chrX 264272 . C T 3634.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3634,381,0 chrX 264790 . A G 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=112;Dels=0.00;FS=2.743;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.890;QD=23.79;ReadPosRankSum=2.384;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2698,294,0 chrX 265229 . A G 5291.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.50;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5291,571,0 chrX 265353 . A G 4796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=197;Dels=0.00;FS=2.911;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.390;QD=24.35;ReadPosRankSum=2.375;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4796,519,0 chrX 265430 . C T 5333.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.24;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5333,556,0 chrX 265456 . A T 5344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.9761;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-1.716;QD=24.40;ReadPosRankSum=1.700;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:5344,559,0 chrX 265530 . A G 3507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.175;DP=152;Dels=0.00;FS=2.772;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.331;QD=23.07;ReadPosRankSum=2.401;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3507,375,0 chrX 265863 . C T 54.97 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=88.3135;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=0.54;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,98:101:9:87,9,0 chrX 265950 . T G 83.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.165;DP=82;Dels=0.00;FS=132.165;HaplotypeScore=17.7463;MLEAC=1;MLEAF=0.500;MQ=59.03;MQ0=0;MQRankSum=2.245;QD=1.01;ReadPosRankSum=-3.236;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,33:82:99:113,0,866 chrX 266229 . A T 3141 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.2495;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.96;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3174,333,0 chrX 266273 . C T 2654 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2687,291,0 chrX 266570 . T C 2043 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.04;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2076,228,0 chrX 266615 . G A 2103 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.90;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2136,228,0 chrX 266741 . T A 2213 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2246,240,0 chrX 267355 . A C 2221 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2254,243,0 chrX 267452 . C T 2483 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2516,264,0 chrX 267824 . T C 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.5677;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.272;QD=23.40;ReadPosRankSum=1.671;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2677,291,0 chrX 267941 . C G 2808 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.1657;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.02;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2841,306,0 chrX 267977 . A G 2434 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4883;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.13;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2467,267,0 chrX 269086 . T C 3947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.397;DP=170;Dels=0.00;FS=9.031;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.598;QD=23.22;ReadPosRankSum=3.377;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:4,165:170:99:3947,438,0 chrX 269458 . G T 3822.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.48;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3822,405,0 chrX 269482 . G A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=20.86;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3651,384,0 chrX 269821 . C T 2504 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.22;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2537,267,0 chrX 269832 . T C 2485 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.20;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2518,279,0 chrX 269989 . G A 2464 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=26.78;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2497,261,0 chrX 270011 . T C 2163 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=25.15;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2196,240,0 chrX 270695 . C G 2657 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.78;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2690,291,0 chrX 270705 . A G 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=3.171;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=1.039;QD=21.18;ReadPosRankSum=1.669;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2363,255,0 chrX 270752 . A G 2215 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.43;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2248,243,0 chrX 271346 . G A 2904 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.20;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2937,318,0 chrX 271477 . T C 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=124;Dels=0.00;FS=8.119;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.339;QD=21.06;ReadPosRankSum=2.331;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2645,294,0 chrX 271792 . C T 3835.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.9723;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.43;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3835,402,0 chrX 272069 . T C 4721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=208;Dels=0.00;FS=6.169;HaplotypeScore=10.4462;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.445;QD=22.70;ReadPosRankSum=2.414;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:4721,507,0 chrX 272177 . C T 3893.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=24.18;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3893,406,0 chrX 272191 . T C 3801.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.90;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3801,411,0 chrX 272315 . A G 4895.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4895,537,0 chrX 273028 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=147;Dels=0.00;FS=2.584;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-1.158;QD=23.61;ReadPosRankSum=2.939;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3471,372,0 chrX 273039 . T G 3504.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.05;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3504,381,0 chrX 273652 . T C 3782.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3782,414,0 chrX 273828 . G T 5043.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.86;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5043,526,0 chrX 273972 . C T 5086.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.81;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5086,546,0 chrX 274173 . A G 4675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=199;Dels=0.00;FS=3.019;HaplotypeScore=8.9236;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.019;QD=23.49;ReadPosRankSum=2.387;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4675,522,0 chrX 274203 . T C 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=165;Dels=0.00;FS=3.227;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.444;QD=23.27;ReadPosRankSum=1.648;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3839,417,0 chrX 275124 . A G 4283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=177;Dels=0.00;FS=5.082;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.956;QD=24.20;ReadPosRankSum=1.712;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:4283,471,0 chrX 275495 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.8986;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.02;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3603,378,0 chrX 275537 . T C 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.262;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=0.366;QD=22.41;ReadPosRankSum=1.683;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3215,345,0 chrX 275542 . C T 3303.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=23.43;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3303,343,0 chrX 275588 . C T 2767 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=20.35;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2800,291,0 chrX 275597 . T C 2632 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.50;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2665,288,0 chrX 276470 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.66;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2957,306,0 chrX 276524 . T C 3009 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.47;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3042,336,0 chrX 276539 . A G 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.898;DP=148;Dels=0.00;FS=6.110;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-0.871;QD=20.88;ReadPosRankSum=1.891;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:3123,345,0 chrX 276704 . T C 3337.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.36;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3337,357,0 chrX 276791 . C T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=25.23;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3457,358,0 chrX 277114 . G T 3385.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.8237;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.35;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3385,351,0 chrX 277400 . T G 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=159;Dels=0.00;FS=13.433;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=2.421;QD=19.58;ReadPosRankSum=2.803;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:3,155:159:99:3146,348,0 chrX 277465 . C T 3467.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.08;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3467,375,0 chrX 277623 . T C 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.4295;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.159;QD=21.07;ReadPosRankSum=1.707;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2983,321,0 chrX 277760 . C T 3474.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.47;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3474,361,0 chrX 278080 . T C 2643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=113;Dels=0.04;FS=0.000;HaplotypeScore=31.9340;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.478;QD=23.39;ReadPosRankSum=1.669;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2676,291,0 chrX 278373 . G A 3207 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.74;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3240,351,0 chrX 278388 . G A 2963 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.32;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2996,327,0 chrX 278409 . T G 2554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=0.082;QD=20.11;ReadPosRankSum=1.705;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2587,285,0 chrX 278515 . C G 4280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=173;Dels=0.00;FS=3.434;HaplotypeScore=10.7573;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.524;QD=24.74;ReadPosRankSum=1.652;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4280,462,0 chrX 278785 . T C 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.0950;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.329;QD=23.34;ReadPosRankSum=1.685;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3455,369,0 chrX 279101 . A G 2565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.143;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.796;QD=20.04;ReadPosRankSum=0.548;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2598,267,0 chrX 279207 . A G 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.350;DP=147;Dels=0.00;FS=9.112;HaplotypeScore=10.8611;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.610;QD=20.93;ReadPosRankSum=3.398;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:4,142:147:99:3110,339,0 chrX 279383 . T C 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.860;QD=20.06;ReadPosRankSum=1.707;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:2861,309,0 chrX 279398 . G C 2839 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=18.68;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2872,306,0 chrX 279703 . G A 5808.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.82;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5808,610,0 chrX 280016 . C A 3519.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.4442;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.27;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3519,378,0 chrX 280099 . G A 5184.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.56;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5184,541,0 chrX 280598 . T C 3313.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.33;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3313,357,0 chrX 280686 . C T 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.676;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.275;QD=23.78;ReadPosRankSum=1.584;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3995,420,0 chrX 280735 . A T 2980 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.6439;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.58;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3013,321,0 chrX 280914 . C A 1994 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.92;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2027,219,0 chrX 281003 . T C 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=141;Dels=0.00;FS=3.039;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.096;QD=19.42;ReadPosRankSum=2.362;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2771,303,0 chrX 281006 . C A 2980 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.84;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3013,318,0 chrX 281056 . T C 4010.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.7696;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.45;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4010,435,0 chrX 281289 . G A 4516.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.15;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4516,472,0 chrX 281490 . G A 4035.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.46;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4035,424,0 chrX 281529 . C T 4325.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.0553;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.30;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4325,462,0 chrX 281613 . G A 5184.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.04;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5184,556,0 chrX 281676 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.0662;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.537;QD=24.14;ReadPosRankSum=1.635;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3428,369,0 chrX 281706 . C T 3196 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.33;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3229,354,0 chrX 282332 . G A 5289.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=28.0226;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.31;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:5289,553,0 chrX 282456 . C T 5165.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.7766;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.20;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5165,550,0 chrX 282525 . T C 5056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.527;DP=217;Dels=0.00;FS=7.068;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.472;QD=23.30;ReadPosRankSum=2.619;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:5,212:217:99:5056,532,0 chrX 282699 . G A 3977.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1291;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.73;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3977,415,0 chrX 282729 . T C 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=4.316;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.170;QD=22.81;ReadPosRankSum=1.710;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3536,387,0 chrX 283056 . C T 2600 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2633,273,0 chrX 283089 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.91;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3117,321,0 chrX 283302 . C T 3207 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.58;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3240,345,0 chrX 283478 . T C 2544 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.4443;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=19.57;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2577,282,0 chrX 283605 . C G 2157 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.95;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2190,246,0 chrX 283650 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.60;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2567,270,0 chrX 284198 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=166;Dels=0.00;FS=6.484;HaplotypeScore=16.0751;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.476;QD=22.26;ReadPosRankSum=2.390;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:3695,414,0 chrX 284309 . C T 3562.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3562,370,0 chrX 284561 . C T 3357.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.15;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3357,348,0 chrX 284672 . G T 2949 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.17;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2982,312,0 chrX 284933 . G A 3736.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.13;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3736,394,0 chrX 285038 . A G 4142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=199;Dels=0.00;FS=2.996;HaplotypeScore=11.0737;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-0.415;QD=20.81;ReadPosRankSum=2.363;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4142,450,0 chrX 285059 . C A 3634.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=19.64;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3634,393,0 chrX 285086 . A G 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=186;Dels=0.00;FS=3.887;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-1.602;QD=19.40;ReadPosRankSum=1.713;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3609,405,0 chrX 285278 . G A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.4990;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.88;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3507,378,0 chrX 285553 . C T 2557 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=21.13;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2590,270,0 chrX 285555 . T C 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=0.415;QD=19.70;ReadPosRankSum=1.703;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2436,270,0 chrX 285837 . C A 5159.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.9826;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.92;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5159,538,0 chrX 285967 . G T 3847.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=23.04;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3847,403,0 chrX 285981 . G C 3563.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=21.73;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3563,384,0 chrX 286028 . A G 2971 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.1442;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.29;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3004,333,0 chrX 286125 . C T 3474.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.3126;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.58;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3474,372,0 chrX 286268 . T C 3783.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.5473;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.22;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3783,408,0 chrX 286349 . T C 2795 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.5762;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.36;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2828,306,0 chrX 286446 . C T 3501.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3501,366,0 chrX 286569 . T A 3272.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4017;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.26;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3272,348,0 chrX 286803 . G A 4138.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.3204;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=23.12;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4138,444,0 chrX 287040 . A G 3577.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.374;DP=183;Dels=0.00;FS=8.949;HaplotypeScore=3.9233;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;MQRankSum=-0.100;QD=19.55;ReadPosRankSum=3.355;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:4,179:183:99:3577,390,0 chrX 287043 . A G 3376.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=181;Dels=0.00;FS=3.004;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=-0.699;QD=18.65;ReadPosRankSum=2.422;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3376,372,0 chrX 287049 . A G 3107 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;MQRankSum=0.367;QD=18.17;ReadPosRankSum=1.691;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3140,342,0 chrX 287051 . T A 3347.01 SnpCluster AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=19.13;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3347,351,0 chrX 287517 . A G 3364.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.5060;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3364,369,0 chrX 288142 . T C 3580.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.95;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3580,384,0 chrX 288305 . T G 3635.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.8475;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.30;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3635,387,0 chrX 288319 . A G 3552.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.53;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3552,399,0 chrX 288454 . T C 4498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.8970;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.119;QD=23.80;ReadPosRankSum=1.695;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4498,486,0 chrX 288609 . G A 5211.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=7.8987;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.96;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5211,547,0 chrX 289470 . A G 2402 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=23.32;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2435,264,0 chrX 289687 . T G 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.635;QD=25.09;ReadPosRankSum=1.698;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2592,279,0 chrX 289825 . A T 3805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=4.110;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-1.071;QD=24.87;ReadPosRankSum=1.687;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3805,397,0 chrX 289974 . T C 5007.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=18.5077;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.25;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5007,561,0 chrX 290043 . A G 5005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=220;Dels=0.00;FS=3.385;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.684;QD=22.75;ReadPosRankSum=1.716;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:1,217:220:99:5005,546,0 chrX 290358 . A G 4803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=13.1423;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=-1.225;QD=18.91;ReadPosRankSum=1.718;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:1,253:254:99:4803,534,0 chrX 290364 . G T 5138.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=9.9832;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=19.03;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:5138,561,0 chrX 290406 . A G 4540.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.84;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:4540,498,0 chrX 290444 . A G 6686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=301;Dels=0.00;FS=2.928;HaplotypeScore=30.9512;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.509;QD=22.21;ReadPosRankSum=2.425;SB=-3.212e+03 GT:AD:DP:GQ:PL 1/1:2,299:301:99:6686,727,0 chrX 290515 . A G 7610.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=368;Dels=0.00;FS=4.291;HaplotypeScore=4.2260;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=-0.301;QD=20.68;ReadPosRankSum=1.723;SB=-3.626e+03 GT:AD:DP:GQ:PL 1/1:1,367:368:99:7610,849,0 chrX 290520 . G A 7970.01 filter AC=2;AF=1.00;AN=2;DP=374;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=21.31;SB=-3.766e+03 GT:AD:DP:GQ:PL 1/1:0,374:374:99:7970,832,0 chrX 290542 . G A 7005.01 PASS AC=2;AF=1.00;AN=2;DP=347;Dels=0.00;FS=0.000;HaplotypeScore=10.9174;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=20.19;SB=-3.556e+03 GT:AD:DP:GQ:PL 1/1:0,347:347:99:7005,724,0 chrX 290883 . G A 3293.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.33;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3293,345,0 chrX 290969 . A G 2545 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=21.94;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2578,279,0 chrX 290972 . A G 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-0.939;QD=21.41;ReadPosRankSum=1.673;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2581,279,0 chrX 291073 . A G 3534.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.01;FS=0.000;HaplotypeScore=21.9963;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=22.37;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3534,393,0 chrX 291165 . T C 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=153;Dels=0.01;FS=2.587;HaplotypeScore=15.4152;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-0.748;QD=18.26;ReadPosRankSum=2.871;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:3,146:152:99:2827,303,0 chrX 291229 . G C 3181 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.52;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3214,351,0 chrX 291251 . T A 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=154;Dels=0.00;FS=3.424;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.720;QD=23.39;ReadPosRankSum=1.597;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3602,376,0 chrX 291405 . G A 5619.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=17.0403;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.57;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5619,609,0 chrX 291438 . A G 5352.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=20.4856;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.79;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:5352,582,0 chrX 291782 . C T 6315.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=24.10;SB=-3.316e+03 GT:AD:DP:GQ:PL 1/1:0,261:262:99:6315,679,0 chrX 291807 . A G 6074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=259;Dels=0.00;FS=3.455;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.074;QD=23.45;ReadPosRankSum=1.705;SB=-3.149e+03 GT:AD:DP:GQ:PL 1/1:1,256:259:99:6074,666,0 chrX 291846 . T C 5264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=6.7273;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-0.014;QD=20.48;ReadPosRankSum=1.705;SB=-2.989e+03 GT:AD:DP:GQ:PL 1/1:1,255:257:99:5264,573,0 chrX 291863 . T A 5470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=0.065;QD=20.26;ReadPosRankSum=1.693;SB=-3.104e+03 GT:AD:DP:GQ:PL 1/1:1,269:270:99:5470,571,0 chrX 291927 . G A 6136.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=18.8146;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.15;SB=-3.029e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:6136,661,0 chrX 291961 . G A 6399.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=6.3273;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.25;SB=-3.470e+03 GT:AD:DP:GQ:PL 1/1:0,315:316:99:6399,673,0 chrX 291966 . G T 5832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=6.7589;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-0.380;QD=18.46;ReadPosRankSum=-0.682;SB=-3.346e+03 GT:AD:DP:GQ:PL 1/1:2,312:316:99:5832,639,0 chrX 292117 . A G 8298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.417;DP=357;Dels=0.00;FS=9.029;HaplotypeScore=17.6072;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.357;QD=23.24;ReadPosRankSum=3.403;SB=-4.603e+03 GT:AD:DP:GQ:PL 1/1:4,349:357:99:8298,895,0 chrX 292170 . A T 8954.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=376;Dels=0.00;FS=6.025;HaplotypeScore=28.7051;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-1.067;QD=23.81;ReadPosRankSum=2.927;SB=-4.830e+03 GT:AD:DP:GQ:PL 1/1:3,373:376:99:8954,937,0 chrX 292203 . G A 9449.01 filter AC=2;AF=1.00;AN=2;DP=398;Dels=0.00;FS=0.000;HaplotypeScore=22.5951;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.74;SB=-5.303e+03 GT:AD:DP:GQ:PL 1/1:0,395:398:99:9449,994,0 chrX 292304 . T C 6793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.970;DP=307;Dels=0.00;FS=11.040;HaplotypeScore=17.7893;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=0.306;QD=22.13;ReadPosRankSum=2.950;SB=-3.482e+03 GT:AD:DP:GQ:PL 1/1:3,299:307:99:6793,756,0 chrX 292319 . C T 6555.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=23.16;SB=-3.469e+03 GT:AD:DP:GQ:PL 1/1:0,282:283:99:6555,685,0 chrX 292331 . T C 6115.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=4.2548;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=22.00;SB=-3.230e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:6115,675,0 chrX 292376 . A G 7013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=24.3944;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-1.248;QD=21.45;ReadPosRankSum=1.711;SB=-3.715e+03 GT:AD:DP:GQ:PL 1/1:1,321:327:99:7013,786,0 chrX 292518 . A T 5740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.579;DP=266;Dels=0.00;FS=15.302;HaplotypeScore=10.7596;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=0.138;QD=21.58;ReadPosRankSum=3.755;SB=-3.437e+03 GT:AD:DP:GQ:PL 1/1:5,261:266:99:5740,607,0 chrX 292540 . G A 5112.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=21.12;SB=-3.335e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5112,544,0 chrX 292551 . T A 5216.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=21.12;SB=-3.018e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5216,564,0 chrX 292616 . T C 6858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=321;Dels=0.00;FS=11.163;HaplotypeScore=15.2911;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=0.267;QD=21.36;ReadPosRankSum=2.959;SB=-3.488e+03 GT:AD:DP:GQ:PL 1/1:3,316:321:99:6858,768,0 chrX 292672 . A G 6850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=17.3678;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.337;QD=22.61;ReadPosRankSum=1.686;SB=-3.706e+03 GT:AD:DP:GQ:PL 1/1:1,302:303:99:6850,748,0 chrX 292752 . A T 5724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=14.2715;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=0.771;QD=23.95;ReadPosRankSum=1.659;SB=-2.839e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:5724,607,0 chrX 292848 . T A 5463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=229;Dels=0.00;FS=4.567;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=0.764;QD=23.86;ReadPosRankSum=1.656;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5463,568,0 chrX 292851 . T C 5107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=226;Dels=0.00;FS=4.456;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=0.828;QD=22.60;ReadPosRankSum=1.671;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:5107,567,0 chrX 292930 . T C 5660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;DP=238;Dels=0.00;FS=9.199;HaplotypeScore=14.3797;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;MQRankSum=1.072;QD=23.78;ReadPosRankSum=2.962;SB=-3.019e+03 GT:AD:DP:GQ:PL 1/1:3,233:238:99:5660,616,0 chrX 292958 . T C 5779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.971;DP=239;Dels=0.00;FS=5.630;HaplotypeScore=12.6060;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;MQRankSum=0.937;QD=24.18;ReadPosRankSum=2.920;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:3,236:239:99:5779,642,0 chrX 293070 . G A 4718.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=9.2219;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=0;QD=17.47;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:4718,505,0 chrX 293080 . G A 4075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.899;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=4.8670;MLEAC=2;MLEAF=1.00;MQ=31.99;MQ0=0;MQRankSum=1.641;QD=15.32;ReadPosRankSum=0.065;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:1,265:266:99:4075,427,0 chrX 293096 . A T 334.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.361;DP=676;Dels=0.00;FS=7.318;HaplotypeScore=385.0737;MLEAC=1;MLEAF=0.500;MQ=29.10;MQ0=0;MQRankSum=-2.387;QD=0.49;ReadPosRankSum=-11.357;SB=-2.390e+02 GT:AD:DP:GQ:PL 0/1:622,54:676:99:364,0,429 chrX 293099 . C A 358.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.653;DP=642;Dels=0.00;FS=1.027;HaplotypeScore=339.2620;MLEAC=1;MLEAF=0.500;MQ=29.12;MQ0=0;MQRankSum=2.225;QD=0.56;ReadPosRankSum=5.825;SB=-4.087e+03 GT:AD:DP:GQ:PL 0/1:190,451:642:99:388,0,199 chrX 293102 . C T 193.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.266;DP=659;Dels=0.00;FS=3.002;HaplotypeScore=341.2030;MLEAC=1;MLEAF=0.500;MQ=29.04;MQ0=0;MQRankSum=-0.903;QD=0.29;ReadPosRankSum=-9.238;SB=-1.437e+03 GT:AD:DP:GQ:PL 0/1:294,195:659:99:223,0,263 chrX 293105 . C T 387.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.594;DP=682;Dels=0.00;FS=9.465;HaplotypeScore=341.9370;MLEAC=1;MLEAF=0.500;MQ=29.11;MQ0=0;MQRankSum=0.218;QD=0.57;ReadPosRankSum=-6.653;SB=-3.213e+03 GT:AD:DP:GQ:PL 0/1:308,374:682:99:417,0,261 chrX 293109 . G A 189.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.661;DP=695;Dels=0.00;FS=2.131;HaplotypeScore=515.5306;MLEAC=1;MLEAF=0.500;MQ=29.10;MQ0=0;MQRankSum=0.351;QD=0.27;ReadPosRankSum=0.050;SB=-1.569e+03 GT:AD:DP:GQ:PL 0/1:478,215:694:99:219,0,504 chrX 293117 . T C 526.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;DP=716;Dels=0.00;FS=4.694;HaplotypeScore=178.6537;MLEAC=1;MLEAF=0.500;MQ=29.70;MQ0=0;MQRankSum=-0.192;QD=0.73;ReadPosRankSum=0.374;SB=-2.074e+03 GT:AD:DP:GQ:PL 0/1:450,260:716:99:556,0,499 chrX 293118 . A T 595.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.126;DP=723;Dels=0.00;FS=9.357;HaplotypeScore=178.6537;MLEAC=1;MLEAF=0.500;MQ=29.74;MQ0=0;MQRankSum=-1.052;QD=0.82;ReadPosRankSum=-0.778;SB=-2.406e+03 GT:AD:DP:GQ:PL 0/1:457,266:723:99:625,0,525 chrX 293119 . G A 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.532;DP=737;Dels=0.00;FS=1.027;HaplotypeScore=178.6537;MLEAC=1;MLEAF=0.500;MQ=29.79;MQ0=0;MQRankSum=-0.422;QD=0.02;ReadPosRankSum=5.119;SB=-1.156e+03 GT:AD:DP:GQ:PL 0/1:565,172:737:43:43,0,1314 chrX 293121 . G A 994.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.364;DP=734;Dels=0.00;FS=12.725;HaplotypeScore=175.9038;MLEAC=1;MLEAF=0.500;MQ=29.86;MQ0=0;MQRankSum=0.530;QD=1.35;ReadPosRankSum=5.795;SB=-2.726e+03 GT:AD:DP:GQ:PL 0/1:446,288:734:99:1024,0,430 chrX 293133 . G A 2082.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.117;DP=747;Dels=0.00;FS=16.955;HaplotypeScore=194.1133;MLEAC=1;MLEAF=0.500;MQ=31.76;MQ0=0;MQRankSum=1.519;QD=2.79;ReadPosRankSum=12.553;SB=-3.584e+03 GT:AD:DP:GQ:PL 0/1:226,350:747:55:2112,0,55 chrX 293142 . C A 254.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=15.835;DP=746;Dels=0.00;FS=16.604;HaplotypeScore=187.4688;MLEAC=1;MLEAF=0.500;MQ=32.91;MQ0=0;MQRankSum=-3.317;QD=0.34;ReadPosRankSum=-21.408;SB=-2.968e+03 GT:AD:DP:GQ:PL 0/1:381,365:746:99:284,0,2865 chrX 293368 . G A 7479.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=13.5376;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=23.67;SB=-3.869e+03 GT:AD:DP:GQ:PL 1/1:0,316:316:99:7479,784,0 chrX 293436 . G A 6467.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=11.0219;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=22.22;SB=-2.870e+03 GT:AD:DP:GQ:PL 1/1:0,290:291:99:6467,685,0 chrX 293490 . A T 3323.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.29;MQ0=0;QD=15.10;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:3323,351,0 chrX 293499 . A G 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.27;MQ0=0;MQRankSum=1.338;QD=13.49;ReadPosRankSum=1.699;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:2880,321,0 chrX 293502 . T C 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=212;Dels=0.00;FS=5.705;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;MQRankSum=-1.552;QD=13.49;ReadPosRankSum=1.716;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:2893,330,0 chrX 293517 . T C 2858 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;QD=14.22;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:2891,330,0 chrX 293604 . T A 5048.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=16.9906;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.48;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5048,532,0 chrX 293664 . T C 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.185;DP=178;Dels=0.00;FS=8.786;HaplotypeScore=25.5837;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.888;QD=20.62;ReadPosRankSum=3.293;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:4,174:178:99:3671,402,0 chrX 293700 . G A 5186.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=22.45;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,227:231:99:5186,547,0 chrX 293718 . T C 5505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.872;DP=286;Dels=0.00;FS=4.631;HaplotypeScore=21.4992;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-0.548;QD=19.25;ReadPosRankSum=4.188;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:6,279:286:99:5505,595,0 chrX 293940 . T C 6667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=295;Dels=0.00;FS=6.990;HaplotypeScore=14.4006;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=1.145;QD=22.60;ReadPosRankSum=1.709;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,294:295:99:6667,718,0 chrX 293985 . C T 5870.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=33.6539;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=23.29;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,245:252:99:5870,619,0 chrX 294039 . A G 4451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=181;Dels=0.00;FS=2.571;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=0.172;QD=24.59;ReadPosRankSum=2.906;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:4451,480,0 chrX 294093 . C T 3318.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.40;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3318,348,0 chrX 294232 . G A 2991 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=22.83;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3024,333,0 chrX 294233 . C G 2893 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=22.25;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,125:130:99:2926,333,0 chrX 294234 . G A 2967 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=23.93;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3000,330,0 chrX 294333 . T A 4710.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=24.28;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4710,502,0 chrX 294344 . T C 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=4.260;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;MQRankSum=1.261;QD=22.34;ReadPosRankSum=1.713;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4110,438,0 chrX 294429 . T C 2317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;MQRankSum=-0.014;QD=18.54;ReadPosRankSum=1.704;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2350,258,0 chrX 294473 . G A 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.430;DP=221;Dels=0.00;FS=34.431;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=0;MQRankSum=0.637;QD=0.18;ReadPosRankSum=12.629;SB=-8.030e+02 GT:AD:DP:GQ:PL 0/1:124,97:221:35:70,0,35 chrX 294480 . A C 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.851;DP=235;Dels=0.00;FS=31.009;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=28.72;MQ0=0;MQRankSum=1.063;QD=0.05;ReadPosRankSum=12.238;SB=-1.018e+03 GT:AD:DP:GQ:PL 0/1:96,139:235:41:41,0,71 chrX 294481 . A C 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.385;DP=237;Dels=0.00;FS=27.017;HaplotypeScore=1.7675;MLEAC=1;MLEAF=0.500;MQ=29.36;MQ0=0;MQRankSum=-0.004;QD=0.05;ReadPosRankSum=12.328;SB=-1.067e+03 GT:AD:DP:GQ:PL 0/1:95,141:237:41:41,0,69 chrX 294549 . T G 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.753;DP=221;Dels=0.00;FS=4.857;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;MQRankSum=-1.044;QD=14.29;ReadPosRankSum=3.817;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:5,216:221:99:3191,375,0 chrX 294578 . A T 3832.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=20.38;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3832,414,0 chrX 294584 . C T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=18.52;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3518,390,0 chrX 294608 . A G 3555.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=43.68;MQ0=0;QD=18.32;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3555,411,0 chrX 294826 . G A 4370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.015;DP=227;Dels=0.00;FS=16.069;HaplotypeScore=12.2968;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;MQRankSum=0.332;QD=19.25;ReadPosRankSum=2.471;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:6,220:226:99:4370,464,0 chrX 294827 . A G 4291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=230;Dels=0.02;FS=2.629;HaplotypeScore=19.4933;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=-1.778;QD=18.66;ReadPosRankSum=2.383;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:2,221:225:99:4291,486,0 chrX 294920 . T G 230.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.123;DP=152;Dels=0.00;FS=16.114;HaplotypeScore=137.1479;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;MQRankSum=-0.785;QD=1.52;ReadPosRankSum=3.663;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:8,144:152:12:263,12,0 chrX 294947 . G T 2956 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=20.39;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2989,312,0 chrX 294972 . T A 2754 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=14.8723;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.40;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2787,294,0 chrX 295057 . T A 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=161;Dels=0.00;FS=3.556;HaplotypeScore=10.5538;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.463;QD=24.37;ReadPosRankSum=1.711;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3923,412,0 chrX 295148 . C T 3807.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=33.0196;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=22.26;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3807,394,0 chrX 295154 . C T 3868.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=22.89;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3868,403,0 chrX 295184 . C T 3652.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.75;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3652,384,0 chrX 295294 . T C 4016.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.31;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4016,438,0 chrX 295430 . G T 4711.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.93;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4711,484,0 chrX 295604 . T C 3852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=3.766;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.466;QD=22.66;ReadPosRankSum=1.712;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3852,414,0 chrX 295733 . C T 4084.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=18.0593;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.08;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4084,432,0 chrX 296106 . A T 4708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.6329;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.919;QD=23.54;ReadPosRankSum=1.679;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4708,471,0 chrX 296792 . G A 4521.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.01;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=24.05;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:4521,475,0 chrX 296872 . T A 4392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=189;Dels=0.00;FS=2.770;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-1.631;QD=23.24;ReadPosRankSum=2.411;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4392,454,0 chrX 296895 . G A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=18.72;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3520,384,0 chrX 296897 . T C 3519.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=19.13;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3519,381,0 chrX 296919 . G A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.6475;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=17.76;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3445,375,0 chrX 296964 . T G 2885 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=16.68;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2918,321,0 chrX 296966 . A G 2804 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=15.84;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:2837,318,0 chrX 297012 . A G 2972 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=17.59;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3005,330,0 chrX 297025 . G A 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=1.195;QD=17.03;ReadPosRankSum=0.179;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:2996,312,0 chrX 297043 . T C 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=4.437;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-0.960;QD=16.90;ReadPosRankSum=1.712;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:2991,327,0 chrX 297190 . A G 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=146;Dels=0.00;FS=2.923;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=-0.884;QD=22.94;ReadPosRankSum=2.416;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3349,366,0 chrX 297205 . C T 3161 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4381;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=22.26;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3194,342,0 chrX 297331 . T C 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.636;DP=131;Dels=0.00;FS=6.123;HaplotypeScore=5.6378;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-0.636;QD=20.21;ReadPosRankSum=2.946;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:3,127:131:99:2681,294,0 chrX 297345 . A G 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-1.405;QD=20.56;ReadPosRankSum=1.650;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2665,297,0 chrX 297365 . A G 1967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-1.635;QD=18.38;ReadPosRankSum=1.667;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2000,219,0 chrX 297458 . T C 3106 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.89;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3139,345,0 chrX 297650 . T C 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.158;DP=157;Dels=0.00;FS=5.261;HaplotypeScore=7.8247;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.284;QD=22.69;ReadPosRankSum=3.336;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:4,153:157:99:3563,390,0 chrX 297732 . T G 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=185;Dels=0.01;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.734;QD=22.82;ReadPosRankSum=2.072;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:2,180:184:99:4221,437,0 chrX 297833 . G A 5025.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.31;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:5025,517,0 chrX 297976 . C T 3339.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.1041;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.03;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3339,349,0 chrX 298032 . A G 3396.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.95;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,143:148:99:3396,372,0 chrX 298159 . A G 2576 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.21;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2609,285,0 chrX 298232 . T C 3732.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.23;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3732,405,0 chrX 298682 . T G 2780 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2813,306,0 chrX 298833 . G T 2082 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.93;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2115,228,0 chrX 298915 . C T 1061 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=23.58;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1094,117,0 chrX 298984 . C A 1582 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.61;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1615,177,0 chrX 299033 . G A 1516 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=6.4099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1549,159,0 chrX 299141 . T C 2493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.760;DP=124;Dels=0.00;FS=4.921;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=-0.978;QD=20.10;ReadPosRankSum=3.734;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:5,119:124:99:2526,279,0 chrX 299142 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=20.56;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2583,276,0 chrX 299158 . T C 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=138;Dels=0.00;FS=2.487;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=0.365;QD=19.72;ReadPosRankSum=2.935;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:2755,297,0 chrX 299346 . G A 3589.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=24.42;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3589,375,0 chrX 299490 . T C 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.277;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-0.447;QD=21.01;ReadPosRankSum=1.709;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3206,348,0 chrX 299496 . G A 3165 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.82;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3198,333,0 chrX 299551 . C T 2891 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.74;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2924,303,0 chrX 299577 . G A 3613.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.58;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3613,384,0 chrX 299757 . A G 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=135;Dels=0.00;FS=5.830;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.331;QD=23.51;ReadPosRankSum=1.745;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:3,131:135:99:3207,348,0 chrX 299820 . T C 3270.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.7565;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.24;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3270,357,0 chrX 299874 . C T 2580 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.57;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2613,270,0 chrX 299961 . A G 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=23.77;ReadPosRankSum=1.673;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2838,315,0 chrX 300176 . C T 4127.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.6506;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.99;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4127,433,0 chrX 300626 . C T 2825 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=23.94;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2858,294,0 chrX 300732 . A T 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.720;DP=135;Dels=0.00;FS=11.173;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.189;QD=20.57;ReadPosRankSum=2.856;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:2810,297,0 chrX 300806 . G T 4067.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.8717;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=25.74;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4067,424,0 chrX 300843 . T A 3411.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=23.69;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3411,357,0 chrX 300846 . T C 3092 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.75;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3125,342,0 chrX 301020 . T C 5067.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=24.01;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:5067,564,0 chrX 301035 . G T 4901.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.7734;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=24.63;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4901,511,0 chrX 301479 . T C 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=3.138;HaplotypeScore=5.1396;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.054;QD=22.78;ReadPosRankSum=1.707;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3177,345,0 chrX 301512 . A G 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=144;Dels=0.00;FS=2.964;HaplotypeScore=4.2468;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-0.593;QD=20.74;ReadPosRankSum=2.398;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3019,336,0 chrX 301515 . T C 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=141;Dels=0.00;FS=2.336;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=0.317;QD=20.68;ReadPosRankSum=1.439;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:2949,300,0 chrX 301867 . T C 3186 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.96;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3219,348,0 chrX 301875 . C T 3209.99 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.98;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3243,339,0 chrX 302097 . A G 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=138;Dels=0.00;FS=9.324;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.222;QD=21.20;ReadPosRankSum=2.948;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:3,134:138:99:2959,333,0 chrX 302157 . C T 4274.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.44;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4274,439,0 chrX 302674 . T C 3962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=171;Dels=0.00;FS=7.140;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.325;QD=23.17;ReadPosRankSum=2.421;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3962,429,0 chrX 302882 . G A 3305.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3305,342,0 chrX 302979 . T C 3092 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3125,339,0 chrX 303071 . A G 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=160;Dels=0.00;FS=6.160;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.257;QD=24.89;ReadPosRankSum=2.418;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3983,429,0 chrX 303269 . A G 3519.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2086;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.78;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3519,387,0 chrX 303316 . C A 3925.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.49;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3925,406,0 chrX 303495 . T C 3828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.247;DP=166;Dels=0.00;FS=8.425;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.658;QD=23.06;ReadPosRankSum=3.406;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:4,161:166:99:3828,414,0 chrX 303556 . G A 5381.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.81;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5381,588,0 chrX 303606 . G A 4795.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.2011;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.97;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,188:192:99:4795,499,0 chrX 303780 . T A 5247.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=14.4169;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.77;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5247,550,0 chrX 304233 . C T 3548.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.0382;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.97;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3548,372,0 chrX 304262 . T A 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.347;QD=24.88;ReadPosRankSum=2.378;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3459,358,0 chrX 304591 . T A 4595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.9938;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.604;QD=24.18;ReadPosRankSum=1.659;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4595,481,0 chrX 304829 . G C 3653.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.12;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3653,396,0 chrX 305004 . A G 1585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=93;Dels=0.00;FS=4.228;HaplotypeScore=11.1015;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.501;QD=17.04;ReadPosRankSum=1.655;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1618,174,0 chrX 305203 . T A 3078 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3111,333,0 chrX 305635 . A G 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.249;QD=22.76;ReadPosRankSum=1.672;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3938,423,0 chrX 305909 . T C 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.483;DP=125;Dels=0.00;FS=3.335;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-1.427;QD=23.42;ReadPosRankSum=1.677;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2961,315,0 chrX 305953 . T C 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.331;QD=24.89;ReadPosRankSum=1.706;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3285,354,0 chrX 305977 . G T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=25.95;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3633,382,0 chrX 306157 . A G 3195 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.9014;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.34;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3228,348,0 chrX 306326 . A T 3468.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.95;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3468,360,0 chrX 306480 . C T 3146 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3179,333,0 chrX 306617 . A G 2572 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.3501;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=20.41;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2605,291,0 chrX 306623 . C T 2584 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.4826;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=19.43;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2617,279,0 chrX 306632 . G A 2857 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2210;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=20.26;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2890,303,0 chrX 306953 . A G 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=184;Dels=0.00;FS=3.001;HaplotypeScore=11.3806;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.383;QD=22.70;ReadPosRankSum=2.396;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:2,180:184:99:4176,471,0 chrX 307287 . A G 2833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.7766;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-1.029;QD=21.30;ReadPosRankSum=1.654;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2866,306,0 chrX 307292 . T C 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.1458;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=-0.136;QD=19.73;ReadPosRankSum=2.323;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2736,294,0 chrX 307299 . C T 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.1358;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.933;QD=21.05;ReadPosRankSum=-1.386;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2770,264,0 chrX 307370 . T C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.565;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.873;QD=22.74;ReadPosRankSum=1.704;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2875,309,0 chrX 308216 . T G 4507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=213;Dels=0.00;FS=9.879;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.425;QD=21.16;ReadPosRankSum=2.391;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:2,209:213:99:4507,495,0 chrX 308673 . T C 2775 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.72;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2808,303,0 chrX 308727 . T C 2390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=5.579;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.340;QD=21.34;ReadPosRankSum=1.670;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2423,261,0 chrX 308843 . A G 2250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.8617;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.005;QD=22.50;ReadPosRankSum=1.697;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2283,230,0 chrX 309348 . T G 3375.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.60;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3375,369,0 chrX 309768 . C T 2220 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.67;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2253,234,0 chrX 310155 . T C 2747 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2780,312,0 chrX 310519 . A G 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=147;Dels=0.00;FS=2.967;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=1.346;QD=22.56;ReadPosRankSum=2.416;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3317,360,0 chrX 310533 . C T 3073 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.90;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3106,327,0 chrX 310656 . T C 2563 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1451;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2596,276,0 chrX 310728 . A G 1947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.732;QD=22.38;ReadPosRankSum=1.692;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1980,219,0 chrX 310843 . C T 2816 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.2520;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.49;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2849,297,0 chrX 310994 . C T 5209.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.53;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5209,553,0 chrX 311146 . G A 5836.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.62;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5836,610,0 chrX 311627 . A C 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.707;DP=144;Dels=0.00;FS=3.741;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.488;QD=23.99;ReadPosRankSum=1.293;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3455,357,0 chrX 311660 . C T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.0634;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.20;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3553,372,0 chrX 311840 . G A 4250.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.76;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4250,442,0 chrX 311915 . T C 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=164;Dels=0.00;FS=5.867;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.049;QD=24.21;ReadPosRankSum=2.896;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3970,432,0 chrX 312403 . T C 4116.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=19.1609;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.44;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4116,450,0 chrX 312482 . T G 4598.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.9264;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.76;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4598,501,0 chrX 312940 . T G 2344 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2377,258,0 chrX 313030 . A G 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=157;Dels=0.00;FS=3.008;HaplotypeScore=10.7564;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.806;QD=24.01;ReadPosRankSum=2.403;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3770,408,0 chrX 313349 . G A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.4540;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.19;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3822,403,0 chrX 313385 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.868;DP=155;Dels=0.00;FS=10.871;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-1.255;QD=21.11;ReadPosRankSum=4.084;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:6,147:155:99:3272,357,0 chrX 313409 . A G 3927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=169;Dels=0.00;FS=8.425;HaplotypeScore=9.7775;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-2.025;QD=23.24;ReadPosRankSum=2.420;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3927,444,0 chrX 313598 . C T 3804.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=22.25;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3804,402,0 chrX 313670 . T C 5520.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=19.8442;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.40;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:0,256:258:99:5520,597,0 chrX 313709 . A T 5498.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.44;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5498,580,0 chrX 313739 . C T 4574.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.8791;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=23.58;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4574,481,0 chrX 313782 . C T 3062 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=0;QD=18.90;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3095,324,0 chrX 313793 . T C 2597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=148;Dels=0.00;FS=3.348;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=0;MQRankSum=-0.436;QD=17.55;ReadPosRankSum=1.661;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:2630,285,0 chrX 313822 . T C 2722 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=16.91;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2755,297,0 chrX 313829 . G A 2934 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=17.89;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2967,309,0 chrX 313850 . G T 3045 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=18.23;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3078,324,0 chrX 313947 . T C 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=139;Dels=0.00;FS=6.504;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=1.724;QD=22.02;ReadPosRankSum=2.414;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3094,333,0 chrX 314053 . T C 4108.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.9698;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=22.95;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4108,456,0 chrX 314406 . C G 4945.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.38;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,216:221:99:4945,532,0 chrX 314438 . A G 4428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=202;Dels=0.00;FS=6.174;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.093;QD=21.92;ReadPosRankSum=2.413;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:4428,477,0 chrX 314471 . G A 5034.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.88;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5034,541,0 chrX 315022 . G A 4539.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.6566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4539,478,0 chrX 315198 . T C 5012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=228;Dels=0.00;FS=6.058;HaplotypeScore=15.6733;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.237;QD=21.98;ReadPosRankSum=2.915;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:3,222:228:99:5012,546,0 chrX 315237 . T C 5816.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=7.8120;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.72;SB=-3.228e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5816,642,0 chrX 315357 . C T 5751.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=17.7689;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.96;SB=-2.902e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5751,610,0 chrX 315513 . C T 4261.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=15.6044;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.31;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4261,456,0 chrX 315571 . T C 3896.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.95;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3896,420,0 chrX 316590 . T C 6514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.707;DP=283;Dels=0.00;FS=7.953;HaplotypeScore=27.8824;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.820;QD=23.02;ReadPosRankSum=3.779;SB=-2.850e+03 GT:AD:DP:GQ:PL 1/1:5,277:283:99:6514,714,0 chrX 316884 . C T 4903.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.23;SB=-2.809e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4903,525,0 chrX 317223 . T G 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=137;Dels=0.00;FS=2.764;HaplotypeScore=7.3020;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.045;QD=20.38;ReadPosRankSum=2.396;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2825,309,0 chrX 317989 . C T 6600.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=21.5425;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=25.29;SB=-3.165e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:6600,697,0 chrX 318225 . A G 5664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.293;QD=21.45;ReadPosRankSum=2.375;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:2,262:264:99:5664,613,0 chrX 318240 . A G 5501.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.24;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:5501,603,0 chrX 318429 . A G 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=17.4235;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.283;QD=22.49;ReadPosRankSum=1.690;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3734,411,0 chrX 318543 . C T 5552.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.0366;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=26.19;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5552,580,0 chrX 318573 . G A 5362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=216;Dels=0.00;FS=9.461;HaplotypeScore=8.3002;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.190;QD=24.82;ReadPosRankSum=0.398;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:2,212:216:99:5362,539,0 chrX 318721 . T A 4098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=206;Dels=0.00;FS=11.019;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-0.976;QD=19.89;ReadPosRankSum=2.898;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:3,203:206:99:4098,407,0 chrX 318723 . C T 3990.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.85;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:3990,423,0 chrX 318780 . A C 4343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=230;Dels=0.00;FS=5.326;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.347;QD=18.88;ReadPosRankSum=2.917;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:3,226:230:99:4343,471,0 chrX 318863 . C A 4421.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=21.57;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4421,471,0 chrX 318879 . A G 4180.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.8402;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=19.09;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,215:219:99:4180,450,0 chrX 318887 . T C 4211.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.779;DP=218;Dels=0.00;FS=11.346;HaplotypeScore=5.7967;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=-0.145;QD=19.32;ReadPosRankSum=3.750;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:5,211:218:99:4211,465,0 chrX 318923 . T C 3626.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.4883;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=17.95;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:3626,396,0 chrX 319398 . T C 4739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.0067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.279;QD=24.55;ReadPosRankSum=2.399;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4739,513,0 chrX 319781 . G T 2256 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.51;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2289,243,0 chrX 319840 . G A 2350 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=81.1253;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.56;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2383,252,0 chrX 319913 . A T 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=148;Dels=0.00;FS=3.070;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-0.664;QD=22.14;ReadPosRankSum=1.708;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3277,348,0 chrX 319952 . T C 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.201;DP=178;Dels=0.00;FS=2.416;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;MQRankSum=-1.812;QD=20.24;ReadPosRankSum=3.380;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:4,172:178:99:3603,387,0 chrX 319958 . T C 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;MQRankSum=-1.369;QD=18.97;ReadPosRankSum=2.963;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:3566,390,0 chrX 319963 . G A 3765.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=19.61;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3765,399,0 chrX 320027 . T C 4443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.252;QD=22.22;ReadPosRankSum=2.413;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4443,480,0 chrX 320192 . T C 5157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.121;DP=255;Dels=0.00;FS=2.701;HaplotypeScore=18.6993;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=1.242;QD=20.22;ReadPosRankSum=0.401;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:2,252:255:99:5157,540,0 chrX 320259 . C T 4137.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.01;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4137,433,0 chrX 320639 . T C 4896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=211;Dels=0.00;FS=7.990;HaplotypeScore=18.7999;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.976;QD=23.20;ReadPosRankSum=2.414;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:2,208:211:99:4896,534,0 chrX 320686 . A G 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=196;Dels=0.00;FS=2.931;HaplotypeScore=13.5173;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.708;QD=23.10;ReadPosRankSum=2.387;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4527,492,0 chrX 320812 . G A 4322.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=25.88;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4322,451,0 chrX 320873 . G C 3515.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.83;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:3515,378,0 chrX 320888 . C T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.51;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3444,360,0 chrX 321044 . G C 2911 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.74;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2944,321,0 chrX 321141 . A T 2804 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.61;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2837,297,0 chrX 321279 . A G 3024 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8145;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3057,330,0 chrX 321374 . T C 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.358;QD=21.19;ReadPosRankSum=1.675;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2618,282,0 chrX 321383 . G A 2619 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.38;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2652,273,0 chrX 321428 . C T 2514 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.95;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2547,276,0 chrX 321551 . C T 3213.98 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.98;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3247,339,0 chrX 321659 . T C 2387 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.87;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2420,261,0 chrX 321725 . A T 2493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.226;QD=21.49;ReadPosRankSum=1.642;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2526,270,0 chrX 321751 . G A 2641 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.30;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2674,282,0 chrX 322216 . G A 3212.98 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.47;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3246,336,0 chrX 322237 . G A 2895 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.83;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2928,309,0 chrX 322290 . T C 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=169;Dels=0.00;FS=2.925;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.283;QD=22.15;ReadPosRankSum=2.261;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3744,405,0 chrX 322389 . A G 3730.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.06;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3730,408,0 chrX 322508 . G A 3549.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9658;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=23.50;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3549,370,0 chrX 322533 . A G 3433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=150;Dels=0.00;FS=2.707;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-1.516;QD=22.89;ReadPosRankSum=2.417;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3433,375,0 chrX 322586 . T G 2874 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=24.78;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2907,315,0 chrX 322636 . T C 2681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=4.172;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-0.075;QD=23.11;ReadPosRankSum=1.612;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2714,294,0 chrX 322729 . A G 1177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.282;DP=130;Dels=0.01;FS=3.624;HaplotypeScore=3.6335;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=-1.222;QD=9.05;ReadPosRankSum=1.034;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:1210,158,0 chrX 322730 . G A 1164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.034;DP=131;Dels=0.01;FS=3.624;HaplotypeScore=4.7083;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=-0.228;QD=8.89;ReadPosRankSum=1.222;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:1197,140,0 chrX 322763 . C A 2218 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.3551;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=17.46;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2251,237,0 chrX 322821 . C A 2490 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=21.84;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2523,264,0 chrX 322824 . A T 2423 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=20.36;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2456,264,0 chrX 322871 . C T 2680 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.52;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2713,291,0 chrX 324913 . T C 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.601;QD=24.64;ReadPosRankSum=1.601;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2645,288,0 chrX 324924 . T C 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-1.435;QD=22.94;ReadPosRankSum=1.699;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2442,267,0 chrX 324999 . T C 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.3803;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.493;QD=23.95;ReadPosRankSum=1.707;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3305,354,0 chrX 325190 . C T 4329.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.32;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4329,454,0 chrX 325803 . C T 4664.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.7558;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.06;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4664,487,0 chrX 325898 . G A 3706.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.38;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3706,382,0 chrX 326422 . G A 3986.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.91;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3986,423,0 chrX 326548 . C T 3552.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3552,372,0 chrX 328451 . A G 2595 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.17;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2628,291,0 chrX 328821 . T C 4328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.857;QD=22.78;ReadPosRankSum=1.714;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4328,483,0 chrX 328838 . C T 4122.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.29;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4122,444,0 chrX 328877 . G T 4390.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.86;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4390,457,0 chrX 329057 . G A 5288.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=14.9809;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.26;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5288,553,0 chrX 329323 . C T 3061 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.19;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3094,324,0 chrX 329730 . G A 3787.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3787,414,0 chrX 330001 . T C 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=4.095;HaplotypeScore=14.3908;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-1.027;QD=23.53;ReadPosRankSum=1.712;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4047,435,0 chrX 330050 . A G 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=143;Dels=0.00;FS=5.883;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.556;QD=23.14;ReadPosRankSum=2.852;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:3309,357,0 chrX 330191 . A G 2186 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=-0.299;QD=18.84;ReadPosRankSum=1.702;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2219,249,0 chrX 330194 . C G 2190 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=19.04;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2223,240,0 chrX 330199 . G A 2134 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=19.94;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2167,222,0 chrX 330274 . T A 2246 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.99;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2279,249,0 chrX 330470 . C G 2303 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.50;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2336,252,0 chrX 330767 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.14;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3380,354,0 chrX 331423 . A T 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=139;Dels=0.00;FS=6.115;HaplotypeScore=13.6405;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.671;QD=24.47;ReadPosRankSum=2.326;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3402,357,0 chrX 331526 . C T 3101 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.8721;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.32;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,128:133:99:3134,336,0 chrX 331559 . C G 2901 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.72;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2934,321,0 chrX 331574 . G C 2946 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=20.75;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2979,324,0 chrX 331604 . T G 3436.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.5028;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.82;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3436,387,0 chrX 331707 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.2796;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.51;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3253,354,0 chrX 331813 . T G 3833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=204;Dels=0.00;FS=9.145;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=0.855;QD=18.79;ReadPosRankSum=3.228;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:4,199:204:99:3833,420,0 chrX 331818 . C T 3828.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.8625;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=18.58;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:3828,405,0 chrX 331946 . A G 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=3.733;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.287;QD=22.93;ReadPosRankSum=1.711;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3761,420,0 chrX 331988 . C T 5546.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=8.1985;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=23.60;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5546,589,0 chrX 332018 . A G 5586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=249;Dels=0.00;FS=3.884;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-0.568;QD=22.43;ReadPosRankSum=1.690;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:1,246:249:99:5586,612,0 chrX 332030 . T C 5397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=245;Dels=0.00;FS=5.916;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-0.898;QD=22.03;ReadPosRankSum=2.930;SB=-2.979e+03 GT:AD:DP:GQ:PL 1/1:3,242:245:99:5397,585,0 chrX 332198 . G T 6316.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=23.22;SB=-3.602e+03 GT:AD:DP:GQ:PL 1/1:0,266:272:99:6316,673,0 chrX 332246 . C T 4643.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=21.20;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4643,484,0 chrX 332261 . T G 4472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=224;Dels=0.00;FS=3.969;HaplotypeScore=12.2184;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=0.918;QD=19.96;ReadPosRankSum=1.604;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:1,216:224:99:4472,492,0 chrX 332335 . G A 5610.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=23.47;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5610,577,0 chrX 332394 . A T 4421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=223;Dels=0.00;FS=2.927;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;MQRankSum=-2.104;QD=19.83;ReadPosRankSum=2.405;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:4421,471,0 chrX 332396 . G C 4191.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=19.40;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,212:216:99:4191,462,0 chrX 332423 . A T 3833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=191;Dels=0.00;FS=6.008;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;MQRankSum=-1.995;QD=20.07;ReadPosRankSum=2.963;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:3833,396,0 chrX 332434 . T C 3712.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=19.23;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3712,402,0 chrX 332897 . G A 6664.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=22.98;SB=-3.322e+03 GT:AD:DP:GQ:PL 1/1:0,289:290:99:6664,718,0 chrX 335788 . C A 2345 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.51;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2378,258,0 chrX 337825 . G A 5196.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=23.9936;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.70;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5196,553,0 chrX 337959 . T C 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.4568;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.190;QD=20.17;ReadPosRankSum=1.712;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3510,387,0 chrX 338049 . G A 3613.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.9477;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.77;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3613,387,0 chrX 338075 . G C 3960.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.0297;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.00;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3960,435,0 chrX 339346 . G A 4072.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.09;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4072,435,0 chrX 339725 . C T 3433.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.06;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3433,363,0 chrX 339735 . G C 3213.98 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=19.60;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:3247,354,0 chrX 340095 . C T 4496.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.42;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4496,472,0 chrX 340238 . G A 4177.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.11;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4177,433,0 chrX 341289 . A T 3572.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.106;QD=21.65;ReadPosRankSum=1.711;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3572,373,0 chrX 341290 . C T 3557.01 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=21.82;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3557,372,0 chrX 341296 . G A 3657.01 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=21.77;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3657,387,0 chrX 341422 . C G 5165.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.70;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:5165,558,0 chrX 342290 . T C 1976 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.58;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2009,219,0 chrX 342501 . A G 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=4.858;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.737;QD=23.58;ReadPosRankSum=1.664;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2415,264,0 chrX 342558 . A G 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=4.616;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.945;QD=25.07;ReadPosRankSum=1.701;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2816,306,0 chrX 343655 . T C 4732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=192;Dels=0.00;FS=3.834;HaplotypeScore=10.5612;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.644;QD=24.65;ReadPosRankSum=1.623;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4732,513,0 chrX 344460 . C T 4058.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.87;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4058,429,0 chrX 344732 . T C 3474.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.44;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3474,378,0 chrX 344747 . A C 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.744;DP=158;Dels=0.00;FS=8.036;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.165;QD=21.08;ReadPosRankSum=3.794;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:5,152:158:99:3330,357,0 chrX 346488 . T C 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.252;QD=25.34;ReadPosRankSum=1.705;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3294,357,0 chrX 347852 . G A 3696.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.0924;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3696,399,0 chrX 347951 . T A 4515.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.0337;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.27;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4515,469,0 chrX 348200 . G A 4156.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.1120;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.30;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4156,430,0 chrX 348282 . A C 3784.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=3.857;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;MQRankSum=0.208;QD=21.62;ReadPosRankSum=1.712;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3784,411,0 chrX 348287 . T C 3562.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=0.454;QD=21.20;ReadPosRankSum=1.691;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3562,387,0 chrX 348292 . A G 3454.01 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=21.19;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3454,378,0 chrX 348305 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=20.75;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3528,369,0 chrX 348584 . A G 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=1.715;QD=21.95;ReadPosRankSum=2.420;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3600,393,0 chrX 348652 . A G 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=155;Dels=0.00;FS=2.566;HaplotypeScore=16.3938;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=2.371;QD=20.31;ReadPosRankSum=2.927;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:3,149:155:99:3181,345,0 chrX 348689 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.17;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3336,348,0 chrX 348750 . C T 3046 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.30;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3079,321,0 chrX 348770 . T C 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=142;Dels=0.00;FS=2.565;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.245;QD=20.35;ReadPosRankSum=2.907;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:3,137:142:99:2922,321,0 chrX 349433 . T C 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.629;DP=188;Dels=0.00;FS=13.901;HaplotypeScore=15.0815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.091;QD=21.74;ReadPosRankSum=2.930;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:3,184:188:99:4088,444,0 chrX 350015 . T A 4146.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.83;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4146,447,0 chrX 350672 . A G 3531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.5430;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.593;QD=23.38;ReadPosRankSum=1.686;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3531,378,0 chrX 351362 . A T 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=111;Dels=0.00;FS=10.016;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.773;QD=25.91;ReadPosRankSum=2.937;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2909,303,0 chrX 354067 . C T 2552 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.08;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2585,267,0 chrX 354367 . A G 1774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=83;Dels=0.00;FS=6.024;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.061;QD=21.37;ReadPosRankSum=2.891;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1807,198,0 chrX 354421 . G A 2224 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=9.0608;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.38;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2257,243,0 chrX 354442 . A G 2123 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=20.81;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2156,234,0 chrX 354679 . C A 729 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=36.0096;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;QD=13.75;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:84:762,84,0 chrX 354692 . T C 633 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=0;QD=14.72;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:75:666,75,0 chrX 354706 . T C 734 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=3;QD=14.68;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,48:50:90:767,90,0 chrX 354889 . A T 100.79 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;DP=32;Dels=0.00;FS=5.441;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.20;MQ0=25;MQRankSum=1.495;QD=3.15;ReadPosRankSum=-0.198;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,11:32:4:130,0,4 chrX 354890 . A G 93.79 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;DP=32;Dels=0.00;FS=5.441;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.20;MQ0=25;MQRankSum=1.495;QD=2.93;ReadPosRankSum=-0.198;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,11:32:4:123,0,4 chrX 355129 . C T 53.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.46;MQ0=2;QD=10.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:5:9:86,9,0 chrX 355841 . G C 2371 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=23.48;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2404,264,0 chrX 357352 . A G 8254.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=30.1630;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.540;QD=22.80;ReadPosRankSum=1.694;SB=-4.463e+03 GT:AD:DP:GQ:PL 1/1:1,360:362:99:8254,915,0 chrX 358387 . A G 3047 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.46;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3080,345,0 chrX 358755 . C T 3422.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.4931;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3422,357,0 chrX 358915 . A G 2478 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2511,276,0 chrX 359747 . C T 3975.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.39;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3975,415,0 chrX 360152 . T G 4805.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.67;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4805,531,0 chrX 360186 . T C 4166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.292;QD=24.65;ReadPosRankSum=2.887;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:3,166:169:99:4166,450,0 chrX 361042 . C T 4094.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.89;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4094,430,0 chrX 361340 . G C 6047.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=16.3941;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.81;SB=-3.323e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6047,652,0 chrX 361456 . A G 6316.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=17.7830;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.86;SB=-3.067e+03 GT:AD:DP:GQ:PL 1/1:0,313:318:99:6316,717,0 chrX 361485 . T C 7058.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.707;DP=366;Dels=0.00;FS=7.638;HaplotypeScore=19.9964;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-1.227;QD=19.28;ReadPosRankSum=3.783;SB=-3.314e+03 GT:AD:DP:GQ:PL 1/1:5,360:366:99:7058,775,0 chrX 362496 . C T 6715.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=22.9239;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.16;SB=-3.996e+03 GT:AD:DP:GQ:PL 1/1:0,301:303:99:6715,703,0 chrX 362618 . T C 5721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=273;Dels=0.00;FS=6.331;HaplotypeScore=11.3338;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.231;QD=20.96;ReadPosRankSum=2.377;SB=-3.424e+03 GT:AD:DP:GQ:PL 1/1:2,269:273:99:5721,618,0 chrX 364028 . T C 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.594;QD=22.47;ReadPosRankSum=1.707;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3112,342,0 chrX 364140 . C A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.0106;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.99;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3575,384,0 chrX 364186 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.66;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3453,375,0 chrX 365220 . A G 4499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=190;Dels=0.00;FS=3.343;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.875;QD=23.68;ReadPosRankSum=1.714;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4499,495,0 chrX 366886 . A G 5913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=247;Dels=0.00;FS=6.625;HaplotypeScore=11.8270;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;MQRankSum=-1.083;QD=23.94;ReadPosRankSum=2.400;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:3,244:247:99:5913,645,0 chrX 367399 . A G 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=176;Dels=0.00;FS=3.655;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;MQRankSum=-1.234;QD=18.84;ReadPosRankSum=1.712;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3316,360,0 chrX 367446 . T A 1002 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;QD=13.01;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1035,108,0 chrX 367449 . T A 368.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.636;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.17;MQ0=0;MQRankSum=0.068;QD=4.91;ReadPosRankSum=2.582;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:3,72:75:24:401,24,0 chrX 367452 . A G 363.04 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=0;MQRankSum=1.871;QD=9.31;ReadPosRankSum=2.662;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:3,36:39:23:396,23,0 chrX 367453 . C G 400 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=0;QD=10.26;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,36:39:48:433,48,0 chrX 367455 . C T 411 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=9.9239;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=10.82;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,35:38:48:444,48,0 chrX 367456 . G A 371.04 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.487;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=9.9239;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;MQRankSum=0.758;QD=9.76;ReadPosRankSum=2.815;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:3,35:38:23:404,23,0 chrX 367458 . T C 363.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.353;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=9.9239;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;MQRankSum=0.162;QD=9.55;ReadPosRankSum=-1.245;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:3,35:38:21:396,21,0 chrX 367482 . C G 47.97 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.2003;MLEAC=2;MLEAF=1.00;MQ=35.98;MQ0=0;QD=0.62;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:9:80,9,0 chrX 367594 . G A 4030.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.28;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4030,424,0 chrX 368720 . G A 3067 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.15;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3100,324,0 chrX 369698 . G A 3398.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3398,360,0 chrX 369900 . T C 2984 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3017,321,0 chrX 370962 . C T 3184 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.8816;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.41;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3217,339,0 chrX 371208 . C T 2845 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.51;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2878,309,0 chrX 373775 . G C 3896.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.8829;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.78;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3896,435,0 chrX 374244 . C T 2696 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=25.20;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2729,279,0 chrX 374410 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.5894;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=3;QD=25.08;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3436,355,0 chrX 375038 . T G 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.9635;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.390;QD=25.13;ReadPosRankSum=1.647;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4071,444,0 chrX 375069 . G C 3370.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.40;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3370,372,0 chrX 375100 . G A 2959 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.45;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2992,309,0 chrX 375963 . T C 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.817;QD=22.00;ReadPosRankSum=2.394;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1991,216,0 chrX 375981 . T C 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.013;QD=21.28;ReadPosRankSum=2.294;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:2,93:96:99:2076,228,0 chrX 376137 . C T 2767 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.39;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2800,291,0 chrX 377456 . A C 2498 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.1053;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.35;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2531,273,0 chrX 377543 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0976;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=25.23;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3356,354,0 chrX 377632 . T A 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.196;DP=108;Dels=0.00;FS=2.987;HaplotypeScore=6.5945;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;MQRankSum=-0.219;QD=24.67;ReadPosRankSum=2.381;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2697,259,0 chrX 377783 . G T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;QD=22.85;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3290,345,0 chrX 377828 . G C 1834 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;QD=14.67;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:1867,207,0 chrX 377853 . A C 1412 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.71;MQ0=0;QD=11.87;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1445,156,0 chrX 377861 . G A 1348 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=11.33;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1381,144,0 chrX 377874 . G T 1344 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=12.33;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1377,141,0 chrX 377883 . C A 1420 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=12.35;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1453,150,0 chrX 377896 . C T 1274 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=11.80;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1307,135,0 chrX 377922 . A G 1474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=3.082;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.44;MQ0=0;MQRankSum=0.823;QD=12.08;ReadPosRankSum=1.704;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:1507,162,0 chrX 378006 . C T 2561 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.5615;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;QD=16.21;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2594,270,0 chrX 378009 . A G 2373 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=3.966;HaplotypeScore=4.3501;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;MQRankSum=-0.585;QD=15.02;ReadPosRankSum=1.710;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:2406,261,0 chrX 378013 . T C 2497 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=157;Dels=0.00;FS=5.487;HaplotypeScore=3.5601;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;MQRankSum=-1.545;QD=15.90;ReadPosRankSum=2.917;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:2530,273,0 chrX 378217 . T A 4198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=173;Dels=0.00;FS=8.361;HaplotypeScore=12.2444;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=0.036;QD=24.27;ReadPosRankSum=2.421;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4198,430,0 chrX 378557 . T C 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.209;DP=149;Dels=0.00;FS=5.207;HaplotypeScore=13.2842;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.006;QD=22.50;ReadPosRankSum=3.340;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:4,143:149:99:3353,366,0 chrX 378608 . G A 3973.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.9351;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.08;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3973,418,0 chrX 378869 . C T 2861 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=18.58;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,148:154:99:2894,309,0 chrX 378873 . G A 2682 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.76;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2715,282,0 chrX 379298 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.36;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3341,346,0 chrX 379394 . A G 3862.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.5263;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.60;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3862,417,0 chrX 380097 . T C 2332 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2365,261,0 chrX 380369 . G A 2369 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.4549;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2402,249,0 chrX 380706 . T C 11006.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.437;DP=485;Dels=0.00;FS=17.234;HaplotypeScore=28.3372;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.341;QD=22.69;ReadPosRankSum=4.513;SB=-5.771e+03 GT:AD:DP:GQ:PL 1/1:7,477:485:99:11006,1186,0 chrX 381023 . A G 4629.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=12.1729;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.13;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4629,510,0 chrX 381644 . T C 3940.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.89;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3940,435,0 chrX 381650 . T C 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=4.078;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=0.784;QD=21.02;ReadPosRankSum=1.713;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3763,405,0 chrX 382499 . C T 3755.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.5223;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.49;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3755,402,0 chrX 382565 . T C 3992.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3992,438,0 chrX 382880 . A G 5300.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.77;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5300,573,0 chrX 383067 . T G 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=3.267;HaplotypeScore=13.2150;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.314;QD=23.55;ReadPosRankSum=1.712;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4122,450,0 chrX 383120 . T C 4729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.542;QD=24.25;ReadPosRankSum=1.714;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4729,528,0 chrX 383282 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.6130;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.29;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3377,351,0 chrX 383417 . T C 2090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=4.349;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.283;QD=21.33;ReadPosRankSum=1.661;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2123,243,0 chrX 385072 . A G 4181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=178;Dels=0.00;FS=2.648;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.531;QD=23.49;ReadPosRankSum=2.394;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4181,450,0 chrX 385186 . T A 4150.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.62;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4150,438,0 chrX 385354 . T C 3898.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.9834;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.83;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3898,420,0 chrX 385600 . T C 4684.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.1994;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.78;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4684,510,0 chrX 385991 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.89;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3547,367,0 chrX 386286 . A C 1718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=78;Dels=0.00;FS=5.772;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.065;QD=22.03;ReadPosRankSum=2.910;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:3,75:78:99:1751,189,0 chrX 386494 . G T 1454 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.72;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1487,153,0 chrX 388199 . C T 2679 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2712,285,0 chrX 388820 . A C 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9827;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-0.466;QD=20.29;ReadPosRankSum=2.399;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2975,333,0 chrX 388825 . T C 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=149;Dels=0.00;FS=4.572;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=-1.267;QD=19.81;ReadPosRankSum=1.639;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2984,327,0 chrX 388844 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.23;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3068,330,0 chrX 390317 . T C 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=140;Dels=0.00;FS=3.019;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.454;QD=23.52;ReadPosRankSum=2.378;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:3293,357,0 chrX 390894 . T G 2732 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=24.61;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2765,297,0 chrX 390902 . G C 2612 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=22.91;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2645,285,0 chrX 390905 . A G 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=0.636;QD=23.46;ReadPosRankSum=2.325;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2825,303,0 chrX 390995 . A G 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.977;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=16.6071;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=0.689;QD=19.94;ReadPosRankSum=0.462;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:2705,300,0 chrX 391133 . C A 2575 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.59;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2608,273,0 chrX 391152 . C T 1890 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.03;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1923,204,0 chrX 391153 . T C 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=-1.389;QD=16.86;ReadPosRankSum=1.670;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1904,210,0 chrX 391236 . G C 3396.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9663;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=20.46;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3396,375,0 chrX 391247 . A G 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.536;DP=181;Dels=0.00;FS=16.416;HaplotypeScore=6.6880;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;MQRankSum=-0.559;QD=17.36;ReadPosRankSum=3.911;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:8,172:181:99:3176,345,0 chrX 391657 . T C 5569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=269;Dels=0.00;FS=5.685;HaplotypeScore=13.6412;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.563;QD=20.70;ReadPosRankSum=1.101;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:3,266:269:99:5569,590,0 chrX 391693 . T C 6260.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=20.4470;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.52;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,304:305:99:6260,679,0 chrX 392269 . T C 4609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=190;Dels=0.00;FS=3.373;HaplotypeScore=19.7339;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-1.121;QD=24.26;ReadPosRankSum=1.714;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:1,186:190:99:4609,504,0 chrX 392321 . C T 4008.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.1360;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=22.52;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4008,421,0 chrX 392331 . T C 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-1.574;QD=21.59;ReadPosRankSum=1.692;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3822,414,0 chrX 392346 . G A 4025.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.85;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4025,426,0 chrX 392676 . C T 3702.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.88;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3702,396,0 chrX 392787 . A G 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.075;QD=21.21;ReadPosRankSum=1.711;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3457,378,0 chrX 393501 . C T 1985 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.46;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2018,222,0 chrX 393564 . G C 1873 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1906,207,0 chrX 394131 . T C 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=4.500;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.527;QD=21.35;ReadPosRankSum=1.713;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,185:189:99:4036,441,0 chrX 394394 . C A 3754.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.3339;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3754,396,0 chrX 394527 . C T 4324.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.29;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4324,454,0 chrX 394692 . C T 3274.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.0454;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.83;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3274,345,0 chrX 394713 . T C 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=141;Dels=0.00;FS=8.764;HaplotypeScore=7.0460;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.583;QD=21.55;ReadPosRankSum=2.397;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:2,137:141:99:3072,333,0 chrX 395135 . C T 3377.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.97;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3377,363,0 chrX 395232 . G A 3641.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.6579;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3641,384,0 chrX 395805 . G A 1641 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.49;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1674,174,0 chrX 395899 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.18;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2745,288,0 chrX 396269 . G A 3136 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3169,330,0 chrX 396363 . T C 2245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.452;QD=22.68;ReadPosRankSum=1.627;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2278,246,0 chrX 396515 . A C 2117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=105;Dels=0.00;FS=2.994;HaplotypeScore=10.5760;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;MQRankSum=-0.769;QD=20.16;ReadPosRankSum=2.379;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:2,102:105:99:2150,234,0 chrX 396551 . C T 2583 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.7411;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2616,276,0 chrX 396613 . C T 3562.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.75;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3562,373,0 chrX 396640 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.803;QD=24.33;ReadPosRankSum=1.682;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3358,360,0 chrX 396723 . A G 1964 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1997,219,0 chrX 396848 . T G 2348 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.9210;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.15;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2381,261,0 chrX 397053 . C T 2514 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=24.89;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2547,267,0 chrX 397072 . G A 2623 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=24.06;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2656,285,0 chrX 397230 . C A 3209.99 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.61;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3243,339,0 chrX 397262 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=23.89;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3163,330,0 chrX 397295 . T C 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=142;Dels=0.00;FS=2.807;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.270;QD=22.44;ReadPosRankSum=2.415;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3220,348,0 chrX 397316 . A G 3226.07 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=3.611;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-1.567;QD=21.95;ReadPosRankSum=1.709;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3259,363,0 chrX 397474 . T C 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=144;Dels=0.00;FS=3.297;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-1.437;QD=20.58;ReadPosRankSum=1.683;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,140:144:99:2997,336,0 chrX 397484 . T G 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.655;DP=148;Dels=0.00;FS=3.314;HaplotypeScore=1.9705;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=0.398;QD=18.32;ReadPosRankSum=1.241;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2744,300,0 chrX 397497 . C T 3084 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.16;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3117,327,0 chrX 398093 . C T 3001 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3354;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.40;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3034,318,0 chrX 398145 . A T 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.145;QD=21.46;ReadPosRankSum=1.706;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2887,309,0 chrX 398191 . T C 2950 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2983,324,0 chrX 398357 . G T 2987 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.63;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3020,312,0 chrX 398569 . T A 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.5186;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.227;QD=23.16;ReadPosRankSum=1.708;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3381,366,0 chrX 398997 . A G 3457.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.84;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3457,369,0 chrX 399038 . G T 3611.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.0376;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.91;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3611,387,0 chrX 400808 . T C 5441.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.86;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5441,586,0 chrX 402164 . A G 2742 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.31;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2775,300,0 chrX 402165 . A G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=0.255;QD=20.22;ReadPosRankSum=1.707;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2783,303,0 chrX 402683 . T G 3945.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.95;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3945,426,0 chrX 402779 . T A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.01;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3526,369,0 chrX 402983 . T C 4853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=208;Dels=0.00;FS=2.887;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.057;QD=23.33;ReadPosRankSum=2.414;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:4853,537,0 chrX 404579 . T A 3882.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.6734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3882,414,0 chrX 404816 . T C 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=128;Dels=0.00;FS=3.040;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.489;QD=22.49;ReadPosRankSum=2.373;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2912,312,0 chrX 404952 . A T 4050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=175;Dels=0.00;FS=7.946;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.108;QD=23.14;ReadPosRankSum=2.294;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4050,421,0 chrX 405244 . A G 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.681;QD=21.14;ReadPosRankSum=1.706;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2908,315,0 chrX 405306 . G A 2191 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.82;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2224,231,0 chrX 405572 . G C 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.0990;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.703;QD=23.12;ReadPosRankSum=1.439;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2784,306,0 chrX 405713 . A G 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=136;Dels=0.00;FS=2.937;HaplotypeScore=9.5618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.483;QD=22.47;ReadPosRankSum=2.413;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3089,330,0 chrX 405835 . A G 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=3.364;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.489;QD=22.29;ReadPosRankSum=1.678;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2886,318,0 chrX 405884 . C T 2898 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.4600;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.31;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2931,315,0 chrX 406257 . A C 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.498;DP=140;Dels=0.00;FS=8.028;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.390;QD=20.82;ReadPosRankSum=3.737;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:5,133:140:99:2948,330,0 chrX 407617 . C T 5950.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-3.291e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5950,622,0 chrX 408145 . T C 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=164;Dels=0.00;FS=3.609;HaplotypeScore=10.0602;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.287;QD=22.99;ReadPosRankSum=1.711;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3771,423,0 chrX 408967 . A G 5505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=237;Dels=0.00;FS=2.611;HaplotypeScore=10.6046;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.041;QD=23.23;ReadPosRankSum=2.346;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:2,235:237:99:5505,600,0 chrX 409479 . G A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3527,372,0 chrX 409825 . T C 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=145;Dels=0.00;FS=3.802;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.660;QD=21.74;ReadPosRankSum=1.708;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3186,342,0 chrX 410082 . A G 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=0.683;QD=23.22;ReadPosRankSum=1.708;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3321,360,0 chrX 410110 . A G 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=143;Dels=0.00;FS=6.237;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=-0.645;QD=22.52;ReadPosRankSum=2.398;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3254,354,0 chrX 410131 . A C 2817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=131;Dels=0.00;FS=6.903;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;MQRankSum=-1.353;QD=21.50;ReadPosRankSum=2.393;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2850,309,0 chrX 410140 . G T 2677 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.8307;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=20.44;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2710,291,0 chrX 410189 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9810;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=21.24;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2667,282,0 chrX 410266 . T C 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=3.216;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.626;QD=21.56;ReadPosRankSum=1.705;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2836,309,0 chrX 410365 . A G 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=2.748;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=0.350;QD=19.64;ReadPosRankSum=2.359;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2174,240,0 chrX 410366 . T C 2150 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=19.91;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2183,246,0 chrX 410379 . A G 2061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;MQRankSum=0.047;QD=18.24;ReadPosRankSum=1.701;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2094,228,0 chrX 410405 . C T 2445 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=19.72;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2478,267,0 chrX 410528 . T C 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.609;QD=24.05;ReadPosRankSum=1.668;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2654,282,0 chrX 410951 . T C 4581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=4.183;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.778;QD=21.92;ReadPosRankSum=1.715;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4581,498,0 chrX 411303 . G A 2889 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=12.6395;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.79;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2922,312,0 chrX 411342 . T C 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.589;QD=23.02;ReadPosRankSum=2.900;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:3,127:131:99:3049,333,0 chrX 411363 . G C 3063 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=6.6944;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.04;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3096,336,0 chrX 411721 . T C 5256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=211;Dels=0.00;FS=2.949;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.506;QD=24.91;ReadPosRankSum=2.391;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:5256,568,0 chrX 411761 . A T 4762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=197;Dels=0.00;FS=7.027;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-0.069;QD=24.17;ReadPosRankSum=2.387;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4762,499,0 chrX 411771 . C T 4283.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.90;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4283,454,0 chrX 412419 . C T 5122.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=12.7521;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.66;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5122,532,0 chrX 412734 . T C 3439.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.5343;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.24;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3439,372,0 chrX 412914 . T C 3142 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.60;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3175,345,0 chrX 412968 . T C 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=149;Dels=0.00;FS=5.748;HaplotypeScore=10.5010;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.210;QD=23.87;ReadPosRankSum=2.953;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3556,396,0 chrX 413049 . T G 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.666;QD=24.54;ReadPosRankSum=1.710;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3853,414,0 chrX 413461 . T G 4078.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.17;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:4078,441,0 chrX 414104 . C T 1980 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=22.00;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,86:90:99:2013,210,0 chrX 414125 . G A 2058 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.58;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2091,219,0 chrX 414544 . T C 3534.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.8754;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.08;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3534,384,0 chrX 414830 . C T 2597 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.64;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2630,285,0 chrX 415848 . C G 4894.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=60.92;MQ0=0;QD=23.08;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4894,531,0 chrX 416115 . T C 3979.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.41;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3979,447,0 chrX 416446 . A G 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=156;Dels=0.00;FS=7.121;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.237;QD=22.52;ReadPosRankSum=2.418;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3513,381,0 chrX 416807 . C T 2678 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2711,285,0 chrX 417115 . T C 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=161;Dels=0.00;FS=6.675;HaplotypeScore=18.1309;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;MQRankSum=1.167;QD=23.58;ReadPosRankSum=2.403;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:3797,417,0 chrX 417327 . C T 2101 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2134,219,0 chrX 417877 . T C 4123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.9974;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.246;QD=24.99;ReadPosRankSum=1.648;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:4123,444,0 chrX 418708 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.7984;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.16;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3250,351,0 chrX 419227 . T A 4096.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.4520;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.92;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4096,430,0 chrX 419760 . G A 2013 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.97;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2046,219,0 chrX 419940 . A T 3752.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.01;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3752,394,0 chrX 420958 . C T 4415.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.6528;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.36;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4415,468,0 chrX 421678 . T A 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=120;Dels=0.00;FS=3.716;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=0.837;QD=22.76;ReadPosRankSum=1.646;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2764,291,0 chrX 421684 . G T 2619 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=22.77;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2652,276,0 chrX 421930 . G A 2443 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.62;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2476,255,0 chrX 421959 . T C 2658 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.44;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2691,294,0 chrX 421977 . C A 2549 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=20.07;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2582,282,0 chrX 421994 . G A 2861 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.67;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2894,309,0 chrX 422418 . T C 2831 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2864,315,0 chrX 422537 . C A 3744.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.18;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3744,399,0 chrX 422597 . G A 3554.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.33;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3554,384,0 chrX 422897 . T G 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=150;Dels=0.00;FS=3.285;HaplotypeScore=7.8442;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.567;QD=20.55;ReadPosRankSum=1.661;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,146:150:99:3115,339,0 chrX 422920 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.91;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3754,391,0 chrX 423483 . A G 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.665;QD=24.64;ReadPosRankSum=1.689;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3942,423,0 chrX 423584 . C T 2540 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2573,267,0 chrX 423783 . T C 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.412;QD=23.26;ReadPosRankSum=1.705;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3080,339,0 chrX 424406 . A T 2285 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=25.39;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2318,243,0 chrX 424420 . G T 2186 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.76;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2219,237,0 chrX 424695 . T C 1804 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=23.13;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1837,198,0 chrX 424721 . G T 1409 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=23.48;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1442,150,0 chrX 424805 . T C 1716 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=35.03;MQ0=0;QD=21.45;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1749,186,0 chrX 424833 . A G 108.26 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.68;MQ0=0;QD=3.38;SB=-2.827e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:15:141,15,0 chrX 425165 . A G 4966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=208;Dels=0.00;FS=4.075;HaplotypeScore=8.9833;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-0.109;QD=23.88;ReadPosRankSum=1.715;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4966,558,0 chrX 426067 . G A 5531.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=17.8973;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.74;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5531,571,0 chrX 427587 . T C 2558 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.64;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2591,282,0 chrX 427640 . T C 2579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.182;QD=22.43;ReadPosRankSum=2.407;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2612,282,0 chrX 427737 . A G 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=148;Dels=0.00;FS=6.169;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.171;QD=24.02;ReadPosRankSum=2.367;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3555,384,0 chrX 428088 . G A 3534.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3534,370,0 chrX 428242 . T C 2839 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2872,306,0 chrX 429437 . A C 4648.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4648,501,0 chrX 429537 . G A 4279.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4279,456,0 chrX 431022 . A G 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.661;QD=21.05;ReadPosRankSum=1.708;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3148,348,0 chrX 431566 . C G 2774 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.74;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2807,306,0 chrX 432257 . G A 3803.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.92;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3803,400,0 chrX 432440 . T C 2929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.163;DP=137;Dels=0.00;FS=7.360;HaplotypeScore=14.8087;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.099;QD=21.38;ReadPosRankSum=2.378;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2962,321,0 chrX 434664 . A T 2988 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.90;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3021,324,0 chrX 434839 . C T 3348.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.32;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3348,346,0 chrX 434855 . T A 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-1.732;QD=20.72;ReadPosRankSum=1.706;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2810,297,0 chrX 435236 . A T 3937.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.43;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3937,415,0 chrX 435638 . T A 3171 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3204,336,0 chrX 436111 . G A 2107 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.01;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2140,222,0 chrX 436479 . G A 480 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=16.00;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:54:513,54,0 chrX 436504 . T G 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.916;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=23.8375;MLEAC=1;MLEAF=0.500;MQ=44.22;MQ0=0;MQRankSum=2.184;QD=0.46;ReadPosRankSum=-1.915;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:28,16:44:50:50,0,67 chrX 436602 . T C 758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.272;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.590;QD=15.16;ReadPosRankSum=3.201;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:4,46:50:87:791,87,0 chrX 436609 . G C 820 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=16.08;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:93:853,93,0 chrX 437758 . C G 2581 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=14.1074;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.55;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2614,297,0 chrX 437923 . A G 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=3.854;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.229;QD=21.53;ReadPosRankSum=1.656;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2961,318,0 chrX 437954 . A G 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.939;QD=22.46;ReadPosRankSum=1.644;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2683,288,0 chrX 438319 . A G 4193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=182;Dels=0.00;FS=2.807;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.236;QD=23.04;ReadPosRankSum=2.382;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4193,450,0 chrX 438411 . A G 4486.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4486,483,0 chrX 438505 . G A 3307.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.76;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3307,354,0 chrX 438853 . G T 3842.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.50;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3842,403,0 chrX 439651 . G A 4202.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.01;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4202,439,0 chrX 440601 . G T 3318.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.33;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3318,354,0 chrX 440847 . T C 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=129;Dels=0.00;FS=3.038;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.221;QD=23.43;ReadPosRankSum=2.373;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3055,336,0 chrX 441105 . A G 2307 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.78;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2340,261,0 chrX 441257 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.56;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3561,381,0 chrX 441507 . A G 2153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.477;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.623;QD=22.43;ReadPosRankSum=1.696;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2186,237,0 chrX 441617 . C T 2748 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.98;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2781,285,0 chrX 441699 . A T 2066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=3.713;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.095;QD=23.75;ReadPosRankSum=1.692;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2099,219,0 chrX 442431 . A G 3937.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3937,423,0 chrX 442545 . G A 3843.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3843,400,0 chrX 443121 . C G 5957.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=17.0168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5957,648,0 chrX 443196 . T C 6336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=268;Dels=0.00;FS=9.057;HaplotypeScore=18.2432;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.673;QD=23.64;ReadPosRankSum=3.390;SB=-3.382e+03 GT:AD:DP:GQ:PL 1/1:4,264:268:99:6336,688,0 chrX 443517 . A G 5065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=224;Dels=0.00;FS=3.596;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-1.389;QD=22.61;ReadPosRankSum=1.592;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:1,221:224:99:5065,544,0 chrX 443738 . A C 5639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=260;Dels=0.00;FS=3.023;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.109;QD=21.69;ReadPosRankSum=2.317;SB=-3.370e+03 GT:AD:DP:GQ:PL 1/1:2,258:260:99:5639,610,0 chrX 443746 . G A 5778.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=5.3884;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.75;SB=-3.339e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5778,595,0 chrX 444241 . G A 4075.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.15;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4075,418,0 chrX 444274 . A G 3768.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.0130;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.82;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3768,405,0 chrX 444290 . C T 3638.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.2713;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.32;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3638,378,0 chrX 444460 . T C 4554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.408;QD=23.84;ReadPosRankSum=1.660;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4554,492,0 chrX 444865 . G A 2792 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.46;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2825,306,0 chrX 444969 . T G 3075 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.02;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3108,339,0 chrX 445175 . C T 2684 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.55;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2717,282,0 chrX 445186 . G A 2320 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.97;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2353,249,0 chrX 445306 . T C 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=10.852;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.902;QD=18.54;ReadPosRankSum=1.708;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2759,318,0 chrX 445395 . T G 1524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.168;QD=23.09;ReadPosRankSum=2.375;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1557,171,0 chrX 445483 . G A 2654 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.28;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2687,279,0 chrX 445655 . A T 4378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=181;Dels=0.00;FS=7.026;HaplotypeScore=10.5210;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.240;QD=24.19;ReadPosRankSum=2.381;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4378,471,0 chrX 445696 . T A 5110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=206;Dels=0.00;FS=5.842;HaplotypeScore=9.8002;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.581;QD=24.81;ReadPosRankSum=2.916;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:3,203:206:99:5110,544,0 chrX 445741 . A G 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.350;DP=206;Dels=0.00;FS=12.868;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.013;QD=22.48;ReadPosRankSum=3.384;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:4,202:206:99:4631,510,0 chrX 445825 . G A 3883.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.6776;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3883,408,0 chrX 446085 . G C 3015 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:3048,336,0 chrX 446453 . A G 4571.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4571,498,0 chrX 446576 . G A 4232.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=19.6018;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.91;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,171:177:99:4232,445,0 chrX 447086 . G C 3719.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.54;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3719,408,0 chrX 447373 . G A 3209.99 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.6872;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.68;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3243,339,0 chrX 447433 . G A 3133 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.47;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3166,330,0 chrX 447484 . T C 3554.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3554,384,0 chrX 447638 . G A 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8599;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.641;QD=23.39;ReadPosRankSum=1.299;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3579,378,0 chrX 447807 . T A 3142 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.6299;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.17;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3175,333,0 chrX 448448 . T C 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=164;Dels=0.00;FS=3.031;HaplotypeScore=15.3215;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.202;QD=22.81;ReadPosRankSum=2.420;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3741,405,0 chrX 448489 . T C 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=190;Dels=0.00;FS=2.979;HaplotypeScore=12.8859;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.046;QD=21.18;ReadPosRankSum=2.397;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:2,185:190:99:4025,432,0 chrX 448936 . T C 2278 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=62.11;MQ0=0;QD=23.73;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2311,249,0 chrX 449033 . G A 1900 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=22.89;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1933,201,0 chrX 449051 . C T 1825 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=20.98;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1858,195,0 chrX 449239 . G A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.00;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3674,387,0 chrX 449256 . T C 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=160;Dels=0.00;FS=2.806;HaplotypeScore=14.6841;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=1.831;QD=19.03;ReadPosRankSum=2.017;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3078,333,0 chrX 449350 . G A 5572.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=12.9423;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.88;SB=-2.913e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5572,571,0 chrX 449403 . G A 5945.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=16.9710;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.27;SB=-3.234e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5945,625,0 chrX 449520 . T A 6615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=250;Dels=0.00;FS=3.379;HaplotypeScore=8.5432;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.563;QD=26.46;ReadPosRankSum=1.718;SB=-3.266e+03 GT:AD:DP:GQ:PL 1/1:1,248:250:99:6615,685,0 chrX 450124 . A T 4254.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4254,453,0 chrX 450273 . A G 6088.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=9.0611;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.72;SB=-2.831e+03 GT:AD:DP:GQ:PL 1/1:0,265:268:99:6088,681,0 chrX 450779 . G A 2472 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2505,273,0 chrX 452144 . G A 2995 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,117:119:99:3028,315,0 chrX 452579 . C T 5006.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.2249;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.42;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5006,532,0 chrX 452858 . G A 4938.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.72;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4938,520,0 chrX 452919 . T A 4976.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.8247;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4976,532,0 chrX 453188 . C T 5021.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=16.4027;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.46;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:0,210:214:99:5021,537,0 chrX 453420 . G A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.54;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3861,408,0 chrX 453440 . A G 3552.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.48;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3552,387,0 chrX 454280 . G A 7619.01 filter AC=2;AF=1.00;AN=2;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=11;QD=21.58;SB=-3.554e+03 GT:AD:DP:GQ:PL 1/1:1,351:353:99:7619,802,0 chrX 455390 . A T 4147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=166;Dels=0.00;FS=2.966;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.410;QD=24.98;ReadPosRankSum=2.405;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:4147,433,0 chrX 455806 . A G 4094.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.81;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4094,444,0 chrX 455829 . C G 3668.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.45;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3668,390,0 chrX 456071 . A T 283 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.085;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.735;QD=14.15;ReadPosRankSum=1.519;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:1,19:20:36:316,36,0 chrX 456328 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=26.13;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3116,327,0 chrX 456349 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.29;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2618,285,0 chrX 456781 . T C 5677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=18.6031;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.281;QD=24.16;ReadPosRankSum=1.688;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:5677,621,0 chrX 461782 . A G 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=3.952;HaplotypeScore=8.8772;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.035;QD=24.46;ReadPosRankSum=1.689;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3889,429,0 chrX 462490 . G A 5516.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=14.5810;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.66;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5516,577,0 chrX 462542 . A G 6106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=13.0878;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-0.467;QD=24.23;ReadPosRankSum=1.663;SB=-3.326e+03 GT:AD:DP:GQ:PL 1/1:1,251:252:99:6106,664,0 chrX 462583 . T C 5447.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=7.4470;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.17;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:5447,586,0 chrX 462605 . A G 4641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.422;DP=251;Dels=0.00;FS=13.366;HaplotypeScore=1.9650;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=-0.282;QD=18.49;ReadPosRankSum=4.375;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:7,244:251:99:4641,513,0 chrX 462634 . A G 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=207;Dels=0.00;FS=6.032;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=-0.384;QD=18.47;ReadPosRankSum=2.927;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:3823,411,0 chrX 462689 . A G 4272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.625;DP=230;Dels=0.00;FS=17.829;HaplotypeScore=20.5376;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.368;QD=18.57;ReadPosRankSum=3.061;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:5,223:230:99:4272,480,0 chrX 462726 . T C 4668.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.29;SB=-3.140e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:4668,510,0 chrX 463068 . C T 2486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.184;HaplotypeScore=8.1065;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=1.325;QD=24.14;ReadPosRankSum=0.238;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2519,270,0 chrX 463086 . T C 1976 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=21.25;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2009,222,0 chrX 463170 . T C 1642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.292;QD=21.05;ReadPosRankSum=1.642;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1675,183,0 chrX 463222 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=14.2137;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.43;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3273,342,0 chrX 463257 . A G 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=155;Dels=0.00;FS=5.484;HaplotypeScore=10.6314;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.137;QD=22.48;ReadPosRankSum=1.687;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3485,390,0 chrX 463350 . T C 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.078;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.0958;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=1.342;QD=22.37;ReadPosRankSum=0.372;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3209,331,0 chrX 463413 . T G 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=175;Dels=0.00;FS=6.096;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.007;QD=21.94;ReadPosRankSum=2.351;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3839,417,0 chrX 463516 . C G 4398.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=23.27;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4398,480,0 chrX 463555 . C T 4202.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.0554;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=20.40;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4202,442,0 chrX 463561 . A G 4048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=204;Dels=0.00;FS=3.533;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=0.230;QD=19.84;ReadPosRankSum=1.715;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4048,438,0 chrX 463573 . T C 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=206;Dels=0.00;FS=5.417;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=-0.293;QD=19.05;ReadPosRankSum=2.946;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:3,203:206:99:3925,426,0 chrX 463641 . A G 5463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=227;Dels=0.00;FS=9.161;HaplotypeScore=13.7088;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.479;QD=24.07;ReadPosRankSum=2.428;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:2,221:227:99:5463,589,0 chrX 464973 . C T 6935.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.35;SB=-3.220e+03 GT:AD:DP:GQ:PL 1/1:0,297:297:99:6935,742,0 chrX 465021 . G A 6435.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=16.7499;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.66;SB=-3.391e+03 GT:AD:DP:GQ:PL 1/1:0,284:284:99:6435,676,0 chrX 465282 . G A 6724.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=22.9034;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.51;SB=-3.425e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:6724,694,0 chrX 465531 . A G 5304.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.17;SB=-3.309e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:5304,594,0 chrX 465795 . G A 5676.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=8.7098;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.07;SB=-2.913e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5676,586,0 chrX 465816 . T G 5498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=240;Dels=0.00;FS=7.457;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.660;QD=22.91;ReadPosRankSum=2.388;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:2,238:240:99:5498,589,0 chrX 466454 . C T 4498.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.30;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4498,472,0 chrX 467010 . C G 3280.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.1953;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.63;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,183:186:99:3280,360,0 chrX 467107 . C T 3527.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.66;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3527,369,0 chrX 467162 . A G 2310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.513;DP=123;Dels=0.00;FS=2.596;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.760;QD=18.78;ReadPosRankSum=2.909;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2343,252,0 chrX 467199 . A G 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=133;Dels=0.00;FS=6.758;HaplotypeScore=21.2805;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.353;QD=21.83;ReadPosRankSum=1.705;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:1,127:133:99:2936,321,0 chrX 467589 . C T 8753.01 filter AC=2;AF=1.00;AN=2;DP=365;Dels=0.00;FS=0.000;HaplotypeScore=25.7387;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.98;SB=-4.847e+03 GT:AD:DP:GQ:PL 1/1:0,364:365:99:8753,919,0 chrX 468653 . C T 6152.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=15.2922;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.13;SB=-3.151e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:6152,649,0 chrX 469453 . C T 4111.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.33;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4111,430,0 chrX 469520 . T C 3646.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.83;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3646,399,0 chrX 469702 . A G 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.401;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=183.4708;MLEAC=1;MLEAF=0.500;MQ=61.46;MQ0=0;MQRankSum=-2.777;QD=0.18;ReadPosRankSum=-0.018;SB=-1.420e+02 GT:AD:DP:GQ:PL 0/1:173,8:183:63:63,0,604 chrX 470207 . C A 1279 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.69;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1312,138,0 chrX 471486 . T A 4868.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=27.5771;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.75;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4868,514,0 chrX 471532 . C T 3918.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.6555;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.44;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3918,403,0 chrX 471770 . T C 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.753;QD=23.32;ReadPosRankSum=1.708;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3404,375,0 chrX 472011 . A G 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.5474;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.925;QD=21.00;ReadPosRankSum=2.417;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3183,342,0 chrX 472246 . C T 3083 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=42.44;MQ0=0;QD=26.35;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3116,321,0 chrX 472296 . C T 2932 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.79;MQ0=0;QD=24.64;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2965,309,0 chrX 476682 . A G 71.51 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.58;MQ0=14;QD=3.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,17:18:12:104,12,0 chrX 476706 . A T 85.51 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.80;MQ0=22;QD=3.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:12:118,12,0 chrX 476741 . G A 85.51 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.63;MQ0=27;QD=2.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:12:118,12,0 chrX 476902 . A T 82.51 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.94;MQ0=1;QD=16.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:12:115,12,0 chrX 484353 . T C 4820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=236;Dels=0.00;FS=3.398;HaplotypeScore=23.6310;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.118;QD=20.42;ReadPosRankSum=1.702;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:1,233:236:99:4820,519,0 chrX 484507 . A C 5044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=209;Dels=0.00;FS=7.154;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.370;QD=24.13;ReadPosRankSum=2.379;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:5044,552,0 chrX 484561 . G C 4407.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=21.93;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4407,486,0 chrX 484566 . G C 4385.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=22.26;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4385,477,0 chrX 484576 . C T 4493.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=22.58;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4493,460,0 chrX 484997 . A G 4190.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.5082;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.08;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4190,456,0 chrX 485168 . G T 4202.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.72;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4202,442,0 chrX 485198 . G T 3729.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1329;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=25.37;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3729,388,0 chrX 485426 . T C 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=3.345;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.128;QD=21.49;ReadPosRankSum=1.711;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3482,375,0 chrX 485447 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.03;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3575,375,0 chrX 486258 . T C 3609.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.8250;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3609,390,0 chrX 487204 . T C 3174 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.86;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3207,348,0 chrX 487278 . T C 2659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=117;Dels=0.00;FS=7.612;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.116;QD=22.73;ReadPosRankSum=2.366;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2692,291,0 chrX 487434 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.53;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2584,276,0 chrX 487716 . T G 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.1685;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.618;QD=23.51;ReadPosRankSum=2.377;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:2,167:171:99:4020,438,0 chrX 487737 . T C 3186 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.82;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3219,354,0 chrX 488779 . A G 3098 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=0.409;QD=18.78;ReadPosRankSum=1.669;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3131,348,0 chrX 488781 . C T 2850 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=18.04;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2883,327,0 chrX 488782 . T C 2777 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=17.47;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2810,324,0 chrX 488809 . T A 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=161;Dels=0.00;FS=4.161;HaplotypeScore=9.0195;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.708;QD=19.02;ReadPosRankSum=1.710;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3096,330,0 chrX 488944 . C T 3155 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.72;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3188,336,0 chrX 489013 . C T 2289 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=24.35;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2322,243,0 chrX 489978 . C G 3379.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0413;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.39;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3379,369,0 chrX 490198 . A G 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.712;QD=23.52;ReadPosRankSum=1.647;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3857,420,0 chrX 490357 . A T 2811 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.79;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2844,309,0 chrX 491055 . G A 3075 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.84;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3108,327,0 chrX 492316 . T C 1420 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1453,159,0 chrX 492786 . G A 3131 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.69;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3164,333,0 chrX 495806 . C T 4356.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4356,471,0 chrX 496413 . G A 4731.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.3143;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.39;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4731,499,0 chrX 496865 . C T 3141 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.27;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3174,333,0 chrX 498452 . G T 4893.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.4497;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.99;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4893,505,0 chrX 498791 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4034,424,0 chrX 499118 . G A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3833,397,0 chrX 500192 . A G 2885 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.4558;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.84;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2918,318,0 chrX 500950 . G A 2109 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2142,222,0 chrX 501282 . A G 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=124;Dels=0.00;FS=3.158;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=0.346;QD=20.43;ReadPosRankSum=1.646;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,119:124:99:2566,279,0 chrX 501283 . C T 2584 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.18;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2617,273,0 chrX 501448 . A C 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.881;QD=22.05;ReadPosRankSum=1.641;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2547,279,0 chrX 501532 . A G 2291 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.91;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2324,261,0 chrX 501976 . A C 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=143;Dels=0.00;FS=2.999;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.978;QD=22.03;ReadPosRankSum=2.328;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3183,345,0 chrX 502163 . G A 3775.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.7555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.03;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3775,396,0 chrX 503379 . A T 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.375;QD=19.84;ReadPosRankSum=1.669;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3333,351,0 chrX 503880 . G C 5065.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.5397;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.61;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,221:224:99:5065,549,0 chrX 504158 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.742;QD=24.09;ReadPosRankSum=1.710;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3758,408,0 chrX 504537 . T C 5226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.7989;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.897;QD=23.23;ReadPosRankSum=1.701;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:5226,570,0 chrX 504610 . T C 5049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=252;Dels=0.00;FS=4.112;HaplotypeScore=18.6793;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.483;QD=20.04;ReadPosRankSum=1.718;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:1,249:252:99:5049,561,0 chrX 504709 . T C 5888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=251;Dels=0.00;FS=3.505;HaplotypeScore=21.1302;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.663;QD=23.46;ReadPosRankSum=1.691;SB=-2.943e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5888,648,0 chrX 505258 . C T 4335.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.2939;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.94;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4335,462,0 chrX 506424 . G A 3956.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.52;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3956,415,0 chrX 507091 . G C 3607.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.89;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3607,396,0 chrX 508514 . T A 5361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-0.252;QD=23.62;ReadPosRankSum=1.686;SB=-2.979e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:5361,559,0 chrX 508529 . A C 5315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=236;Dels=0.00;FS=9.773;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.119;QD=22.52;ReadPosRankSum=2.970;SB=-2.933e+03 GT:AD:DP:GQ:PL 1/1:3,233:236:99:5315,576,0 chrX 509825 . T A 4999.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.9941;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.63;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4999,520,0 chrX 510183 . C T 2578 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.5380;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.79;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2611,276,0 chrX 511453 . G A 2149 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2182,234,0 chrX 511949 . C T 3552.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.9692;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3552,369,0 chrX 511989 . G A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.73;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3338,357,0 chrX 512096 . C T 3200 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.7921;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.06;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3233,336,0 chrX 512140 . T C 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=2.950;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.801;QD=23.69;ReadPosRankSum=2.392;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3089,339,0 chrX 512179 . A G 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=3.358;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.054;QD=24.15;ReadPosRankSum=1.708;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3477,378,0 chrX 512491 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3430,360,0 chrX 513875 . G C 4372.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:4372,474,0 chrX 514186 . C T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3272,348,0 chrX 515737 . G A 4986.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.5459;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.63;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4986,523,0 chrX 516190 . C T 2518 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2551,273,0 chrX 516436 . G A 2694 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2727,285,0 chrX 516831 . C T 3600.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.36;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3600,373,0 chrX 516981 . T C 3322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=149;Dels=0.00;FS=6.992;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.660;QD=22.30;ReadPosRankSum=2.383;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:2,145:149:99:3322,357,0 chrX 517244 . G C 3818.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.42;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3818,423,0 chrX 517494 . T G 3433.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=22.59;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3433,375,0 chrX 517501 . C T 3666.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=23.06;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3666,382,0 chrX 517768 . G A 3532.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=24.87;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3532,367,0 chrX 517771 . A C 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=-0.099;QD=23.95;ReadPosRankSum=1.707;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3401,372,0 chrX 517899 . A G 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=141;Dels=0.00;FS=6.114;HaplotypeScore=10.5380;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.864;QD=22.34;ReadPosRankSum=2.950;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:3183,345,0 chrX 517919 . T C 2965 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=7.3494;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.63;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2998,324,0 chrX 517972 . C T 3694.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=21.11;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3694,385,0 chrX 517982 . T A 3512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=155.8902;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;MQRankSum=0.584;QD=20.42;ReadPosRankSum=1.712;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3512,372,0 chrX 518277 . G A 2153 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;QD=23.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2186,228,0 chrX 518690 . C T 2322 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2355,240,0 chrX 519794 . T C 4429.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.07;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4429,483,0 chrX 521093 . G A 6159.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=21.4260;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.23;SB=-3.397e+03 GT:AD:DP:GQ:PL 1/1:0,275:277:99:6159,643,0 chrX 521645 . T G 4929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=201;Dels=0.00;FS=3.016;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.338;QD=24.52;ReadPosRankSum=2.400;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4929,534,0 chrX 521900 . G A 5749.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=16.0869;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.86;SB=-3.273e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:5749,627,0 chrX 522481 . C G 7992.01 PASS AC=2;AF=1.00;AN=2;DP=347;Dels=0.00;FS=0.000;HaplotypeScore=22.1861;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.03;SB=-4.122e+03 GT:AD:DP:GQ:PL 1/1:0,341:347:99:7992,876,0 chrX 523373 . C T 5035.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.22;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:5035,529,0 chrX 523974 . A C 1304 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.60;MQ0=0;QD=11.85;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1337,147,0 chrX 523980 . T C 1224 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.53;MQ0=0;QD=11.13;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,106:110:99:1257,135,0 chrX 524165 . C T 3437.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=23.38;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3437,360,0 chrX 524341 . C T 3151 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=23.87;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3184,336,0 chrX 524370 . T C 2578 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.96;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2611,294,0 chrX 524477 . G A 2167 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=21.46;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2200,228,0 chrX 524507 . C T 1964 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=19.84;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1997,207,0 chrX 524523 . T C 1860 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=18.42;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1893,207,0 chrX 524550 . C T 1864 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=16.07;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1897,204,0 chrX 524557 . A T 1810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=111;Dels=0.00;FS=3.641;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=0.078;QD=16.31;ReadPosRankSum=1.701;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1843,195,0 chrX 524596 . C A 2047 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=21.78;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2080,219,0 chrX 524618 . G A 1761 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=22.29;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1794,186,0 chrX 525049 . G A 7548.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=19.5347;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.50;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,295:296:99:7548,790,0 chrX 525235 . G T 10002.01 filter AC=2;AF=1.00;AN=2;DP=398;Dels=0.00;FS=0.000;HaplotypeScore=20.1049;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.13;SB=-4.620e+03 GT:AD:DP:GQ:PL 1/1:0,397:398:99:10002,1045,0 chrX 525454 . C T 5182.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=12.9668;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.73;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:5182,544,0 chrX 525745 . C A 158.06 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=46.8299;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=2.98;SB=-3.181e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:21:191,21,0 chrX 526305 . A G 5043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=215;Dels=0.00;FS=10.646;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.432;QD=23.46;ReadPosRankSum=2.379;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:2,208:215:99:5043,570,0 chrX 526730 . T C 2918 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.3726;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.16;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2951,318,0 chrX 527538 . A G 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.968;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.8728;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.804;QD=15.79;ReadPosRankSum=2.877;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:3,217:222:99:3505,381,0 chrX 527660 . T C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=160;Dels=0.00;FS=4.352;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.666;QD=19.67;ReadPosRankSum=1.688;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3180,345,0 chrX 528102 . C T 5206.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.3761;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.24;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5206,556,0 chrX 528146 . C G 4682.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.2905;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.84;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4682,516,0 chrX 528164 . C T 4621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.464;QD=23.58;ReadPosRankSum=0.089;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4621,498,0 chrX 528639 . A T 6656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=264;Dels=0.00;FS=2.990;HaplotypeScore=15.6413;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.417;QD=25.21;ReadPosRankSum=2.356;SB=-3.292e+03 GT:AD:DP:GQ:PL 1/1:2,262:264:99:6656,691,0 chrX 528849 . G A 4736.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.22;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4736,493,0 chrX 528913 . A G 4276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.6358;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.247;QD=24.43;ReadPosRankSum=1.653;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4276,465,0 chrX 529045 . A G 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=140;Dels=0.00;FS=6.435;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.588;QD=24.24;ReadPosRankSum=2.344;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3393,366,0 chrX 529184 . G A 4167.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.68;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:4167,430,0 chrX 529256 . T C 4044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=47.11;MQ0=0;MQRankSum=1.376;QD=23.11;ReadPosRankSum=1.673;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4044,462,0 chrX 529296 . A T 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=143;Dels=0.00;FS=3.019;HaplotypeScore=2.3404;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;MQRankSum=-1.930;QD=24.37;ReadPosRankSum=2.415;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3485,378,0 chrX 529307 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.44;MQ0=0;QD=21.87;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3051,345,0 chrX 529308 . G A 3121 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.59;MQ0=0;QD=22.45;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3154,351,0 chrX 529362 . G A 3024 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=20.71;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3057,330,0 chrX 529374 . A G 2708 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=19.21;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2741,297,0 chrX 529383 . A G 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.8928;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;MQRankSum=-1.554;QD=17.72;ReadPosRankSum=2.417;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:2744,294,0 chrX 529442 . T C 3424.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=20.50;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3424,375,0 chrX 529464 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=3.579;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.67;MQ0=0;MQRankSum=0.699;QD=18.80;ReadPosRankSum=1.712;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3269,360,0 chrX 529470 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=3.554;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;MQRankSum=0.937;QD=18.92;ReadPosRankSum=1.712;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3250,357,0 chrX 529486 . A G 2775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=3.035;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;MQRankSum=-1.147;QD=18.38;ReadPosRankSum=2.417;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:2808,309,0 chrX 529522 . A T 842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=77.0034;MLEAC=2;MLEAF=1.00;MQ=31.31;MQ0=0;MQRankSum=-1.440;QD=8.86;ReadPosRankSum=1.696;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:875,102,0 chrX 529549 . T C 1136 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.05;MQ0=0;QD=12.35;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1169,132,0 chrX 529553 . C T 1325 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=0;QD=13.95;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1358,147,0 chrX 529640 . C T 2915 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=24.91;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2948,315,0 chrX 529795 . G A 2194 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=21.94;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2227,234,0 chrX 529812 . A C 2197 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.0015;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.97;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2230,243,0 chrX 530079 . T C 2959 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.76;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2992,330,0 chrX 530523 . G A 4081.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.19;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4081,421,0 chrX 530814 . G A 3516.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=17.1539;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.54;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3516,364,0 chrX 531033 . A G 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=155;Dels=0.00;FS=3.034;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.246;QD=23.32;ReadPosRankSum=2.402;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3615,396,0 chrX 531048 . C T 3630.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=23.42;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3630,378,0 chrX 531409 . C A 3793.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.46;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3793,400,0 chrX 531521 . G A 3748.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=24.82;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3748,385,0 chrX 531568 . C T 4136.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3002;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;QD=26.86;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4136,433,0 chrX 531599 . T G 4713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=195;Dels=0.00;FS=5.537;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;MQRankSum=-0.119;QD=24.17;ReadPosRankSum=2.954;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:3,192:195:99:4713,513,0 chrX 531713 . T C 4859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.3159;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=0.984;QD=22.81;ReadPosRankSum=0.789;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4859,522,0 chrX 531747 . T G 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=174;Dels=0.00;FS=5.377;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;MQRankSum=0.215;QD=20.64;ReadPosRankSum=1.712;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,168:173:99:3591,396,0 chrX 531751 . T C 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=168;Dels=0.00;FS=5.547;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;MQRankSum=-0.640;QD=20.70;ReadPosRankSum=1.711;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,164:168:99:3477,381,0 chrX 531791 . A G 2212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.7355;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;MQRankSum=-1.276;QD=17.15;ReadPosRankSum=1.678;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2245,258,0 chrX 531794 . T C 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=7.570;HaplotypeScore=3.7302;MLEAC=2;MLEAF=1.00;MQ=34.29;MQ0=0;MQRankSum=-0.058;QD=16.75;ReadPosRankSum=1.617;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2077,237,0 chrX 531806 . T A 2261 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=17.94;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2294,243,0 chrX 531807 . G A 2328 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;QD=18.19;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2361,255,0 chrX 531814 . T A 2597 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.1730;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;QD=17.91;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2630,279,0 chrX 531946 . C T 1664 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;QD=17.52;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1697,183,0 chrX 531953 . G A 1562 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.99;MQ0=0;QD=15.78;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1595,177,0 chrX 531961 . G A 1377 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.01;MQ0=0;QD=14.49;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1410,153,0 chrX 531967 . G A 1296 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.66;MQ0=0;QD=12.71;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1329,144,0 chrX 531989 . C T 1120 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=33.18;MQ0=0;QD=10.98;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1153,123,0 chrX 532000 . C A 986 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.18;MQ0=0;QD=9.48;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1019,108,0 chrX 532003 . G A 1050 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.39;MQ0=0;QD=10.00;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1083,114,0 chrX 532936 . A G 3890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.8084;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.921;QD=24.62;ReadPosRankSum=1.644;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3890,426,0 chrX 533138 . A G 5487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=226;Dels=0.00;FS=4.510;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.027;QD=24.28;ReadPosRankSum=1.701;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:5487,592,0 chrX 533243 . C T 5748.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.85;SB=-3.138e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5748,607,0 chrX 533424 . A C 4960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.577;DP=212;Dels=0.00;FS=7.982;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.456;QD=23.40;ReadPosRankSum=3.799;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:5,206:212:99:4960,534,0 chrX 534756 . A G 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.1656;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.000;QD=21.42;ReadPosRankSum=1.691;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3662,402,0 chrX 534827 . A C 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=162;Dels=0.00;FS=2.995;HaplotypeScore=12.4593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.781;QD=21.83;ReadPosRankSum=2.343;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3537,387,0 chrX 535430 . T C 5035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.824;QD=24.32;ReadPosRankSum=1.715;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:5035,546,0 chrX 535873 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.32;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3231,339,0 chrX 537007 . G A 4156.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:4156,444,0 chrX 537048 . A T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.9678;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.30;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3839,402,0 chrX 537207 . A G 4009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.124;QD=23.86;ReadPosRankSum=1.711;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4009,435,0 chrX 538006 . G A 1666 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=22.21;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1699,177,0 chrX 538044 . T C 1436 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;QD=22.79;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1469,159,0 chrX 538049 . C T 1612 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.34;MQ0=0;QD=24.06;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1645,168,0 chrX 538084 . A G 1626 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=36.60;MQ0=0;QD=22.27;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1659,180,0 chrX 538389 . T A 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=11.26;MQ0=58;MQRankSum=0.950;QD=0.15;ReadPosRankSum=-1.845;SB=-1.249e+00 GT:AD:DP:GQ:PL 0/1:69,8:77:41:41,0,74 chrX 538428 . C A 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.653;DP=29;Dels=0.00;FS=16.580;HaplotypeScore=5.4547;MLEAC=1;MLEAF=0.500;MQ=18.14;MQ0=12;MQRankSum=1.164;QD=1.21;ReadPosRankSum=1.531;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:20,7:29:39:65,0,39 chrX 538432 . A T 76.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.434;DP=23;Dels=0.00;FS=22.304;HaplotypeScore=5.4547;MLEAC=2;MLEAF=1.00;MQ=20.37;MQ0=6;MQRankSum=2.887;QD=3.33;ReadPosRankSum=2.887;SB=-2.255e+01 GT:AD:DP:GQ:PL 1/1:17,6:23:12:109,12,0 chrX 538438 . T G 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;MQRankSum=-0.727;QD=12.49;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,3:4:9:82,9,0 chrX 538441 . A G 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.051;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=31.08;MQ0=0;MQRankSum=2.651;QD=0.82;ReadPosRankSum=2.885;SB=-8.997e+01 GT:AD:DP:GQ:PL 1/1:58,3:61:9:82,9,0 chrX 538523 . T C 1004 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=49.6486;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=18.94;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1037,111,0 chrX 538944 . T C 4049.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.99;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4049,435,0 chrX 539524 . T G 1114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=3.291;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=38.69;MQ0=0;MQRankSum=-1.047;QD=11.60;ReadPosRankSum=1.443;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1147,126,0 chrX 539780 . C T 2473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=4.427;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.054;QD=25.49;ReadPosRankSum=-0.875;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2506,261,0 chrX 540420 . G A 3714.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.96;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3714,390,0 chrX 540433 . A G 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=146;Dels=0.00;FS=2.903;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.564;QD=23.01;ReadPosRankSum=2.416;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3359,372,0 chrX 540805 . G T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=25.62;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3561,378,0 chrX 540972 . A T 1802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;MQRankSum=-1.507;QD=19.17;ReadPosRankSum=2.371;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1835,198,0 chrX 541095 . T C 731 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;MQRankSum=-1.733;QD=19.76;ReadPosRankSum=1.639;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:1,36:37:57:764,57,0 chrX 541148 . T A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.14;MQ0=1;QD=8.26;SB=-2.576e+01 GT:AD:DP:GQ:PL 1/1:1,2:3:6:56,6,0 chrX 541439 . T C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=5.62;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:48,6,0 chrX 541571 . G C 656 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.16;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:75:689,75,0 chrX 541613 . A T 1128 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=24.52;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1161,123,0 chrX 542527 . T C 4005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.712;DP=178;Dels=0.00;FS=5.526;HaplotypeScore=15.5227;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.000;QD=22.50;ReadPosRankSum=2.938;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:4005,438,0 chrX 542554 . T G 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.6338;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.379;QD=21.62;ReadPosRankSum=1.649;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3675,396,0 chrX 542636 . C T 4599.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.95;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4599,481,0 chrX 542960 . C T 1639 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;QD=21.85;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1672,177,0 chrX 543083 . T G 1984 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=72.9211;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=23.34;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2017,219,0 chrX 543721 . A G 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=124;Dels=0.00;FS=6.057;HaplotypeScore=9.2890;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=1;MQRankSum=0.828;QD=22.68;ReadPosRankSum=2.943;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:4,120:124:99:2845,303,0 chrX 543776 . T C 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.949;DP=139;Dels=0.00;FS=9.516;HaplotypeScore=4.2950;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=1.445;QD=20.39;ReadPosRankSum=2.774;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:3,135:139:99:2867,306,0 chrX 543800 . G C 3151 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.01;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3184,342,0 chrX 543878 . T G 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=1.047;QD=23.82;ReadPosRankSum=1.672;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:4145,447,0 chrX 544118 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.93;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3279,354,0 chrX 544304 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.02;FS=0.000;HaplotypeScore=4.2666;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.91;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3391,352,0 chrX 544322 . C G 3525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;DP=154;Dels=0.00;FS=4.213;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-1.008;QD=22.89;ReadPosRankSum=-0.736;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3525,365,0 chrX 544484 . C T 4306.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.3180;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.75;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4306,454,0 chrX 544523 . T C 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=3.220;HaplotypeScore=12.1944;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.306;QD=23.19;ReadPosRankSum=1.712;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3988,435,0 chrX 545038 . A G 4676.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=23.38;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4676,504,0 chrX 545209 . T C 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=187;Dels=0.00;FS=6.139;HaplotypeScore=7.4733;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-0.905;QD=21.46;ReadPosRankSum=2.370;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:4013,438,0 chrX 545233 . C T 4546.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=22.73;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4546,472,0 chrX 545249 . A G 4058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=3.053;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=0.673;QD=19.51;ReadPosRankSum=1.715;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:4058,444,0 chrX 545260 . G T 3921.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.32;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3921,409,0 chrX 545373 . G A 6298.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=24.0215;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.02;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,238:242:99:6298,652,0 chrX 545436 . G T 4830.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=16.8360;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.56;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4830,514,0 chrX 545824 . G A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=16.3151;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.94;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3471,363,0 chrX 546078 . T C 3380.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.64;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3380,366,0 chrX 546103 . T C 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=152;Dels=0.00;FS=6.098;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.093;QD=23.00;ReadPosRankSum=2.954;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3496,372,0 chrX 546527 . T C 4609.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.6802;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4609,498,0 chrX 546659 . C T 4024.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.10;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4024,409,0 chrX 547200 . C T 5238.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.9587;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.81;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5238,550,0 chrX 547820 . C A 5796.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=13.9949;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.20;SB=-2.875e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5796,604,0 chrX 547987 . A C 5808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=250;Dels=0.00;FS=3.226;HaplotypeScore=15.9235;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.838;QD=23.23;ReadPosRankSum=1.718;SB=-3.043e+03 GT:AD:DP:GQ:PL 1/1:1,247:250:99:5808,633,0 chrX 549289 . T C 5461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=263;Dels=0.00;FS=6.379;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.109;QD=20.76;ReadPosRankSum=2.412;SB=-3.382e+03 GT:AD:DP:GQ:PL 1/1:2,258:263:99:5461,600,0 chrX 549376 . T C 4443.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.78;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4443,495,0 chrX 549394 . T C 4421.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.9972;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.19;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4421,486,0 chrX 549427 . A G 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.639;QD=19.98;ReadPosRankSum=1.714;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3756,414,0 chrX 549542 . T C 4684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=214;Dels=0.00;FS=3.200;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.665;QD=21.89;ReadPosRankSum=1.683;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:1,210:214:99:4684,522,0 chrX 550048 . G T 55.97 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=189.4638;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=0.55;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:9:88,9,0 chrX 550314 . G T 2525 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=23.38;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2558,273,0 chrX 550333 . T C 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-0.146;QD=20.60;ReadPosRankSum=1.700;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2258,252,0 chrX 550341 . G A 2364 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=22.30;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2397,249,0 chrX 550378 . A G 2482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=0.369;QD=20.34;ReadPosRankSum=1.704;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2515,279,0 chrX 550587 . C T 3030 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.19;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3063,318,0 chrX 550609 . A G 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=168;Dels=0.00;FS=9.388;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=1.479;QD=21.18;ReadPosRankSum=2.420;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3558,381,0 chrX 550676 . G A 4277.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.63;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4277,442,0 chrX 550721 . C T 4458.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.29;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4458,477,0 chrX 551117 . T C 5332.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.3462;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-2.875e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5332,576,0 chrX 551409 . C A 3703.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3703,384,0 chrX 551577 . C G 3576.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3576,384,0 chrX 551614 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=3.586;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.923;QD=24.47;ReadPosRankSum=1.707;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3353,366,0 chrX 552019 . G A 4766.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.7844;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4766,513,0 chrX 552134 . G A 4649.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.93;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4649,490,0 chrX 552137 . G A 4816.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=4.5124;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.99;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:4816,499,0 chrX 552241 . A G 4343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=195;Dels=0.00;FS=2.706;HaplotypeScore=14.2413;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.323;QD=22.27;ReadPosRankSum=2.336;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4343,474,0 chrX 552280 . C T 4369.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.12;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4369,463,0 chrX 552529 . T C 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.759;QD=23.69;ReadPosRankSum=1.703;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2900,318,0 chrX 552584 . A T 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=129;Dels=0.00;FS=6.333;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-0.125;QD=23.43;ReadPosRankSum=2.373;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3056,315,0 chrX 552593 . T C 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.1626;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=0.988;QD=21.78;ReadPosRankSum=1.703;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2668,288,0 chrX 553604 . T C 2719 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.04;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2752,297,0 chrX 553641 . T C 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=16.1956;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.774;QD=21.25;ReadPosRankSum=2.337;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:2,129:134:99:2880,312,0 chrX 553782 . C T 2851 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5134;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.76;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2884,303,0 chrX 553828 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.357;DP=155;Dels=0.00;FS=13.905;HaplotypeScore=6.0361;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.210;QD=22.88;ReadPosRankSum=3.402;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:4,150:155:99:3547,384,0 chrX 553855 . C T 3790.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.9546;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.93;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3790,397,0 chrX 553911 . G T 3590.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.10;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3590,376,0 chrX 553987 . T C 3511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.281;QD=23.72;ReadPosRankSum=1.685;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3511,381,0 chrX 554502 . C T 2773 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4126;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.18;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2806,291,0 chrX 554517 . A T 2720 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.30;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2753,288,0 chrX 554571 . A G 2706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=119;Dels=0.00;FS=8.759;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=0.305;QD=22.74;ReadPosRankSum=2.408;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:2,115:119:99:2739,294,0 chrX 554739 . A G 4193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=170;Dels=0.00;FS=7.744;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.108;QD=24.66;ReadPosRankSum=2.377;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4193,450,0 chrX 554884 . C G 4232.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.27;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:4232,462,0 chrX 554895 . T C 3983.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.88;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:3983,432,0 chrX 554957 . C T 2986 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=21.03;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3019,315,0 chrX 554974 . A G 2898 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=20.85;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2931,318,0 chrX 554999 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.23;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3133,336,0 chrX 555015 . A G 2788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8549;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-0.247;QD=20.96;ReadPosRankSum=1.706;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2821,303,0 chrX 555162 . G A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=20.3848;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.38;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3259,342,0 chrX 555458 . G A 5529.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.8927;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.48;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5529,577,0 chrX 555723 . T C 5877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.369;DP=249;Dels=0.00;FS=9.137;HaplotypeScore=16.5945;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.491;QD=23.60;ReadPosRankSum=3.376;SB=-3.206e+03 GT:AD:DP:GQ:PL 1/1:4,242:249:99:5877,628,0 chrX 556159 . C T 4630.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4630,493,0 chrX 556720 . A G 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=3.323;HaplotypeScore=7.4421;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.265;QD=23.32;ReadPosRankSum=1.636;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3404,366,0 chrX 556864 . C T 4321.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.2182;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.28;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4321,465,0 chrX 557026 . G A 5244.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=24.50;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5244,553,0 chrX 557209 . C T 6213.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=5.8072;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=23.62;SB=-3.148e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:6213,646,0 chrX 557221 . C T 5306.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=22.68;SB=-3.198e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5306,553,0 chrX 557239 . T C 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=222;Dels=0.00;FS=6.912;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=-1.372;QD=19.82;ReadPosRankSum=2.416;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:4400,486,0 chrX 557590 . A G 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=17.9459;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.704;QD=21.39;ReadPosRankSum=-0.069;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2707,297,0 chrX 557648 . C G 2348 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.54;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2381,270,0 chrX 557770 . T G 3056 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.15;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3089,336,0 chrX 558226 . T C 3304.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6572;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.94;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3304,357,0 chrX 558253 . G A 3094 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.10;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3127,333,0 chrX 558314 . T C 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.059;DP=153;Dels=0.00;FS=8.805;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.292;QD=21.42;ReadPosRankSum=3.367;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:4,149:153:99:3278,354,0 chrX 558558 . A G 3619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.195;QD=21.41;ReadPosRankSum=1.630;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3619,393,0 chrX 558652 . A G 2715 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.6159;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=18.99;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2748,309,0 chrX 558676 . T C 3124 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=19.77;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3157,342,0 chrX 558889 . T C 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=142;Dels=0.00;FS=2.705;HaplotypeScore=12.2243;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.653;QD=23.65;ReadPosRankSum=2.415;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3359,369,0 chrX 559033 . T C 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.146;QD=22.08;ReadPosRankSum=1.683;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3190,363,0 chrX 559588 . A G 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=2.707;HaplotypeScore=8.5939;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.041;QD=22.93;ReadPosRankSum=2.384;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3439,369,0 chrX 559813 . G A 3489.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.26;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3489,363,0 chrX 559883 . T C 4601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.1130;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.107;QD=23.72;ReadPosRankSum=1.661;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4601,501,0 chrX 559922 . A G 4570.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.6152;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.29;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4570,504,0 chrX 560037 . T C 4167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=3.590;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=1.010;QD=21.70;ReadPosRankSum=1.678;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4167,450,0 chrX 560156 . C T 4586.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.9289;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.48;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4586,487,0 chrX 560174 . C G 4049.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.9421;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.09;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,187:192:99:4049,450,0 chrX 560201 . A C 3375.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.74;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3375,366,0 chrX 560210 . A G 3399.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=18.27;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:3399,381,0 chrX 560264 . C T 3660.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.06;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3660,384,0 chrX 560285 . G A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.0072;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.54;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3944,409,0 chrX 560417 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=189;Dels=0.00;FS=8.063;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.994;QD=21.48;ReadPosRankSum=2.398;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4060,435,0 chrX 560603 . T G 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=109;Dels=0.00;FS=4.142;HaplotypeScore=7.3453;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.128;QD=22.42;ReadPosRankSum=1.700;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2477,270,0 chrX 560679 . G T 2914 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.7637;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.77;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2947,315,0 chrX 561055 . A G 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.551;DP=152;Dels=0.00;FS=5.325;HaplotypeScore=13.8463;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=0.161;QD=19.65;ReadPosRankSum=2.658;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:3,147:152:99:3020,333,0 chrX 561590 . A G 3707.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.02;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3707,396,0 chrX 562463 . T C 4456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=185;Dels=0.00;FS=7.375;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.435;QD=24.09;ReadPosRankSum=2.383;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4456,480,0 chrX 562628 . T C 3863.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.70;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3863,414,0 chrX 562685 . A G 4463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.297;DP=184;Dels=0.00;FS=3.382;HaplotypeScore=9.8773;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.543;QD=24.26;ReadPosRankSum=-1.051;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4463,464,0 chrX 562764 . T C 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=3.251;HaplotypeScore=9.0547;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=0.322;QD=21.77;ReadPosRankSum=1.691;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3657,393,0 chrX 562775 . G A 3758.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.24;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3758,388,0 chrX 562979 . T G 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=145;Dels=0.00;FS=3.919;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-1.054;QD=20.99;ReadPosRankSum=1.708;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3077,333,0 chrX 563075 . T C 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=151;Dels=0.00;FS=3.040;HaplotypeScore=11.1258;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.430;QD=23.91;ReadPosRankSum=1.709;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3611,408,0 chrX 563141 . T C 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.8766;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.195;QD=24.04;ReadPosRankSum=1.683;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3413,369,0 chrX 563498 . T C 3527.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1800;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.75;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3527,378,0 chrX 563508 . T C 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.6616;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=-1.422;QD=20.04;ReadPosRankSum=1.713;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3587,384,0 chrX 563528 . G A 3967.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.4681;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.14;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3967,418,0 chrX 563755 . G T 4735.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.21;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4735,505,0 chrX 563993 . G A 3420.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.78;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3420,366,0 chrX 564092 . T C 2879 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.60;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2912,318,0 chrX 564269 . G A 4152.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=26.96;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4152,427,0 chrX 564290 . T C 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.287;DP=173;Dels=0.00;FS=5.258;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=0.544;QD=23.46;ReadPosRankSum=3.287;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:4,168:173:99:4059,438,0 chrX 564333 . T G 3900.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.54;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3900,420,0 chrX 564368 . A C 3595.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.90;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3595,393,0 chrX 564566 . G A 4681.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=17.4540;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=24.13;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4681,493,0 chrX 564773 . T C 4617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=195;Dels=0.00;FS=8.335;HaplotypeScore=11.4675;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-1.089;QD=23.68;ReadPosRankSum=2.324;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4617,498,0 chrX 564807 . G A 4835.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.81;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4835,508,0 chrX 564818 . T C 4581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=220;Dels=0.00;FS=5.079;HaplotypeScore=6.3145;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-1.368;QD=20.82;ReadPosRankSum=1.669;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:4581,498,0 chrX 565018 . A G 3692.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.82;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3692,405,0 chrX 565262 . T C 4123.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4123,450,0 chrX 565364 . A G 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-1.613;QD=18.30;ReadPosRankSum=1.708;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2723,294,0 chrX 565373 . T C 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=3.768;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.139;QD=18.57;ReadPosRankSum=1.663;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2819,309,0 chrX 565457 . T C 4052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.116;DP=178;Dels=0.00;FS=15.220;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=2.625;QD=22.76;ReadPosRankSum=3.410;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:4,174:178:99:4052,435,0 chrX 565604 . T C 4566.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=25.51;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4566,498,0 chrX 565667 . A C 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=3.126;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-0.684;QD=21.95;ReadPosRankSum=1.709;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:2,151:156:99:3424,375,0 chrX 565696 . A T 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.010;HaplotypeScore=6.4927;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-1.060;QD=21.54;ReadPosRankSum=1.706;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2920,306,0 chrX 565712 . G A 2609 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=18.91;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2642,282,0 chrX 565724 . G A 2885 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.76;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2918,306,0 chrX 566045 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=24.57;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3981,418,0 chrX 566084 . A G 3892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-0.934;QD=21.87;ReadPosRankSum=1.713;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3892,420,0 chrX 566093 . C T 3874.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=21.76;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3874,406,0 chrX 566114 . C T 3643.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.0031;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.70;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3643,379,0 chrX 566519 . T C 3525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=156;Dels=0.00;FS=2.896;HaplotypeScore=14.5357;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.199;QD=22.60;ReadPosRankSum=2.386;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3525,387,0 chrX 566594 . G A 4079.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.6909;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.17;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4079,427,0 chrX 566600 . G C 3843.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.00;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3843,432,0 chrX 566656 . A G 3475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=169;Dels=0.00;FS=7.446;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.240;QD=20.56;ReadPosRankSum=2.421;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3475,378,0 chrX 567062 . G A 3357.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.43;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3357,349,0 chrX 567157 . T C 3645.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.98;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3645,396,0 chrX 567191 . T C 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.3640;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.392;QD=23.50;ReadPosRankSum=1.670;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3948,429,0 chrX 567298 . C T 3681.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.7774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.54;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3681,387,0 chrX 567375 . C A 4044.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.1227;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.72;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4044,424,0 chrX 567462 . A G 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.517;QD=21.90;ReadPosRankSum=1.708;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3231,354,0 chrX 567525 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.366;DP=170;Dels=0.00;FS=9.187;HaplotypeScore=12.6155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.946;QD=23.40;ReadPosRankSum=3.377;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:4,165:170:99:3978,429,0 chrX 568363 . G A 4546.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.3753;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4546,475,0 chrX 568539 . A G 3527.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2537;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.67;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3527,390,0 chrX 568805 . C T 3208 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.30;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3241,339,0 chrX 568992 . A T 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.515;QD=23.08;ReadPosRankSum=1.638;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3439,360,0 chrX 569307 . G A 4920.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.0774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4920,523,0 chrX 570422 . T C 4998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=250;Dels=0.00;FS=4.615;HaplotypeScore=20.3963;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.465;QD=19.99;ReadPosRankSum=1.718;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:1,245:250:99:4998,543,0 chrX 570648 . C G 2454 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2487,267,0 chrX 570822 . A G 2446 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=21.84;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2479,282,0 chrX 571582 . A G 7855.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=23.6865;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.51;SB=-4.515e+03 GT:AD:DP:GQ:PL 1/1:0,349:349:99:7855,859,0 chrX 571651 . G A 7384.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=27.5849;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.79;SB=-3.834e+03 GT:AD:DP:GQ:PL 1/1:0,319:324:99:7384,775,0 chrX 571765 . A T 5962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=16.7840;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.883;QD=23.38;ReadPosRankSum=1.691;SB=-2.564e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:5962,631,0 chrX 572786 . G T 10103.01 filter AC=2;AF=1.00;AN=2;DP=462;Dels=0.00;FS=0.000;HaplotypeScore=18.4037;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.87;SB=-5.682e+03 GT:AD:DP:GQ:PL 1/1:0,459:462:99:10103,1099,0 chrX 572936 . C T 8117.01 filter AC=2;AF=1.00;AN=2;DP=375;Dels=0.00;FS=0.000;HaplotypeScore=34.0867;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.65;SB=-3.010e+03 GT:AD:DP:GQ:PL 1/1:0,373:375:99:8117,853,0 chrX 573135 . A C 6271.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.58;SB=-3.001e+03 GT:AD:DP:GQ:PL 1/1:0,263:266:99:6271,687,0 chrX 574034 . C G 3811.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.52;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3811,420,0 chrX 574073 . C T 3391.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.40;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3391,352,0 chrX 574091 . T C 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=127;Dels=0.00;FS=6.338;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=1.532;QD=22.55;ReadPosRankSum=2.391;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2897,321,0 chrX 574310 . G A 4654.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.5743;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=25.71;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4654,493,0 chrX 574412 . C T 4419.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.6122;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.41;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4419,466,0 chrX 574799 . T C 4585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=189;Dels=0.00;FS=7.720;HaplotypeScore=11.9254;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.565;QD=24.26;ReadPosRankSum=2.398;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:4585,495,0 chrX 575093 . T C 2636 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.61;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2669,288,0 chrX 575332 . A G 2268 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=21.20;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2301,252,0 chrX 575346 . A C 2295 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=20.86;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2328,249,0 chrX 575549 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9229;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.34;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3596,387,0 chrX 576182 . G A 2940 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.85;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2973,306,0 chrX 576416 . T C 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=178;Dels=0.00;FS=2.919;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.159;QD=23.03;ReadPosRankSum=2.408;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4099,453,0 chrX 576551 . C T 3394.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.7074;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.76;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3394,360,0 chrX 576835 . C A 1467 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=46.2594;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=20.37;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1500,159,0 chrX 576915 . T C 1750 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=23.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1783,192,0 chrX 576952 . A G 2982 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=22.59;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3015,324,0 chrX 576986 . C T 2272 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.17;MQ0=0;QD=22.27;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2305,243,0 chrX 576987 . T G 2248 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.17;MQ0=0;QD=22.04;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2281,243,0 chrX 577001 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.13;MQ0=0;QD=20.23;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1591,168,0 chrX 577019 . A C 754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.185;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;MQRankSum=-2.131;QD=18.39;ReadPosRankSum=3.229;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:4,37:41:84:787,84,0 chrX 577035 . T A 129.13 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=9.93;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:162,18,0 chrX 577387 . A G 4295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=189;Dels=0.00;FS=2.344;HaplotypeScore=14.4244;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.899;QD=22.72;ReadPosRankSum=2.239;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:3,186:189:99:4295,468,0 chrX 577591 . C T 3534.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.56;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3534,364,0 chrX 577732 . G A 3736.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=16.9255;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3736,399,0 chrX 578278 . G A 4240.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.04;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4240,439,0 chrX 578455 . T C 4486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.4491;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.808;QD=22.89;ReadPosRankSum=1.714;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4486,480,0 chrX 579663 . G A 5502.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=22.64;SB=-3.179e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5502,574,0 chrX 579671 . G A 5361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=7.0204;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.756;QD=21.11;ReadPosRankSum=1.718;SB=-3.181e+03 GT:AD:DP:GQ:PL 1/1:1,252:254:99:5361,543,0 chrX 579944 . G A 5811.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=14.0388;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=24.73;SB=-2.984e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5811,604,0 chrX 580057 . C T 4464.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=24.66;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4464,457,0 chrX 580104 . T C 3947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=5.772;HaplotypeScore=2.3503;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-1.691;QD=23.22;ReadPosRankSum=1.712;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3947,426,0 chrX 580110 . T C 3723.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.03;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3723,417,0 chrX 580387 . T C 4399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=173;Dels=0.00;FS=2.451;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.587;QD=25.43;ReadPosRankSum=2.960;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:4399,471,0 chrX 580576 . A G 4928.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.4230;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.81;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4928,546,0 chrX 580666 . T A 4628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=206;Dels=0.00;FS=4.750;HaplotypeScore=15.1766;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.084;QD=22.47;ReadPosRankSum=1.698;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4628,484,0 chrX 580696 . G A 4371.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.08;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4371,454,0 chrX 580888 . T A 3649.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.17;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3649,384,0 chrX 580991 . A G 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=128;Dels=0.00;FS=5.966;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.945;QD=22.30;ReadPosRankSum=2.945;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:2887,327,0 chrX 581696 . G A 284 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=3.79;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:33:317,33,0 chrX 581733 . C T 198.03 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=5.35;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:24:231,24,0 chrX 581734 . G A 201.03 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=5.74;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:24:234,24,0 chrX 582558 . G A 2837 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.9139;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=23.07;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2870,300,0 chrX 584125 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=23.00;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3115,321,0 chrX 584131 . T C 2680 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.10;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2713,306,0 chrX 584707 . T C 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.538;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.445;QD=12.78;ReadPosRankSum=3.228;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:5,238:243:99:3139,345,0 chrX 584710 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=252;Dels=0.00;FS=3.016;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=1.032;QD=12.83;ReadPosRankSum=2.293;SB=-3.114e+03 GT:AD:DP:GQ:PL 1/1:2,249:252:99:3267,342,0 chrX 584812 . C T 4166.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.28;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4166,447,0 chrX 584830 . T C 3370.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.60;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3370,366,0 chrX 584898 . G T 2689 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5112;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.60;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2722,285,0 chrX 585418 . G A 4694.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.71;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4694,501,0 chrX 585776 . G C 3357.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.87;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3357,363,0 chrX 585871 . G A 2977 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3010,315,0 chrX 585973 . A T 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=148;Dels=0.00;FS=7.539;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.477;QD=23.78;ReadPosRankSum=2.383;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3519,367,0 chrX 586432 . T A 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.938;DP=73;Dels=0.03;FS=13.139;HaplotypeScore=10.9733;MLEAC=1;MLEAF=0.500;MQ=52.79;MQ0=0;MQRankSum=0.681;QD=0.51;ReadPosRankSum=-5.691;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,16:71:67:67,0,314 chrX 586561 . C A 2995 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.35;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3028,318,0 chrX 586635 . C T 3224.03 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5050;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=24.06;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3257,336,0 chrX 586827 . A G 2480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=133;Dels=0.00;FS=5.446;HaplotypeScore=9.7789;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=-0.523;QD=18.65;ReadPosRankSum=2.720;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2513,276,0 chrX 586842 . G C 2432 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.00;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2465,276,0 chrX 587401 . T C 4139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.191;DP=182;Dels=0.00;FS=8.227;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.782;QD=22.74;ReadPosRankSum=3.383;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:4,178:182:99:4139,447,0 chrX 587558 . T C 4868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.051;QD=23.75;ReadPosRankSum=1.681;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:4868,531,0 chrX 587592 . A G 4195.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.1084;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.08;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4195,450,0 chrX 587671 . G T 4756.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=23.31;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4756,496,0 chrX 587672 . C T 4714.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=23.22;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4714,496,0 chrX 587843 . T C 4288.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.23;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4288,465,0 chrX 588782 . T C 4573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=191;Dels=0.00;FS=9.273;HaplotypeScore=10.0525;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.778;QD=23.94;ReadPosRankSum=2.385;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4573,501,0 chrX 588829 . T C 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=4.162;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.261;QD=22.61;ReadPosRankSum=1.613;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3301,354,0 chrX 589176 . G A 3158 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.48;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3191,342,0 chrX 589204 . G A 2996 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.55;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3029,315,0 chrX 589855 . G A 2916 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2949,303,0 chrX 589903 . T C 2439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=4.992;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.463;QD=23.91;ReadPosRankSum=1.698;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2472,279,0 chrX 589961 . G A 2762 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.9568;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2795,294,0 chrX 590030 . A G 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=3.836;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.100;QD=24.25;ReadPosRankSum=1.699;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2555,276,0 chrX 590069 . T C 2612 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.32;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2645,288,0 chrX 590113 . T G 2408 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.35;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2441,261,0 chrX 590592 . T A 4312.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.7833;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.43;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4312,462,0 chrX 590713 . G A 4046.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.94;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4046,424,0 chrX 591126 . C T 4893.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.1809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:1,220:223:99:4893,517,0 chrX 591944 . A G 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.799;DP=169;Dels=0.00;FS=22.970;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.738;QD=24.25;ReadPosRankSum=3.781;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:5,164:169:99:4099,441,0 chrX 591972 . A G 3929.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.71;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3929,432,0 chrX 592549 . A T 3924.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.4831;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3924,403,0 chrX 592873 . C G 5175.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.31;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:0,224:232:99:5175,559,0 chrX 592918 . G C 5563.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=16.6403;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.71;SB=-3.048e+03 GT:AD:DP:GQ:PL 1/1:0,242:245:99:5563,601,0 chrX 593074 . T C 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=185;Dels=0.00;FS=7.947;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.354;QD=21.45;ReadPosRankSum=2.383;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:3968,429,0 chrX 593947 . T C 4726.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.2295;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.08;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,209:214:99:4726,519,0 chrX 594119 . C T 6101.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=24.31;SB=-3.241e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:6101,634,0 chrX 595037 . G A 4373.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.57;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4373,454,0 chrX 595255 . G A 4684.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.4060;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.52;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4684,490,0 chrX 595640 . G C 3563.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.7835;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.72;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3563,393,0 chrX 595994 . T C 4843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.9776;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.304;QD=24.84;ReadPosRankSum=1.679;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4843,525,0 chrX 596468 . G C 4995.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=16.9610;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.50;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4995,555,0 chrX 598202 . T C 4847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=220;Dels=0.00;FS=3.627;HaplotypeScore=18.8624;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.182;QD=22.03;ReadPosRankSum=1.700;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:4847,531,0 chrX 598360 . T A 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.990;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.723;QD=22.59;ReadPosRankSum=-0.628;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4157,431,0 chrX 598472 . A C 3650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=4.355;HaplotypeScore=10.4090;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.564;QD=21.47;ReadPosRankSum=0.748;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3650,390,0 chrX 599268 . G A 5023.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=15.1860;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.27;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5023,523,0 chrX 599394 . T C 5106.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.90;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5106,561,0 chrX 600970 . A G 4350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.072;QD=25.59;ReadPosRankSum=1.691;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4350,477,0 chrX 602520 . C A 3105 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.5273;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.66;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3138,324,0 chrX 605415 . T C 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=1.489;QD=25.09;ReadPosRankSum=1.688;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3939,420,0 chrX 605547 . G A 2356 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.06;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2389,255,0 chrX 605679 . G A 1775 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.1666;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=14.92;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,115:119:99:1808,192,0 chrX 605685 . C T 1789 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.02;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=17.04;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1822,192,0 chrX 605839 . G A 2460 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.21;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2493,258,0 chrX 606207 . C T 3849.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1291;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.16;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3849,408,0 chrX 606423 . T C 4007.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.26;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4007,435,0 chrX 606584 . G A 5147.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.7702;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.72;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5147,558,0 chrX 607028 . C G 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.3661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.523;QD=22.41;ReadPosRankSum=0.000;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3742,402,0 chrX 608223 . A G 2838 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.26;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2871,309,0 chrX 609808 . C A 3279.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.6318;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.57;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3279,351,0 chrX 610057 . C T 4487.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.39;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4487,472,0 chrX 610724 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=25.27;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3336,346,0 chrX 610791 . G A 2561 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=19.11;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2594,270,0 chrX 610792 . C A 2562 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=19.41;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2595,267,0 chrX 610977 . T C 3561.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=22.40;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3561,381,0 chrX 611160 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.245;DP=187;Dels=0.00;FS=8.643;HaplotypeScore=7.9442;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=0.117;QD=21.11;ReadPosRankSum=3.310;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:4,183:187:99:3948,426,0 chrX 611164 . C T 3935.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.01;FS=0.000;HaplotypeScore=7.0317;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=22.23;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3935,412,0 chrX 611185 . C T 3809.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.52;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3809,391,0 chrX 611484 . G A 4767.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.3806;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-2.715e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4767,505,0 chrX 611869 . G A 4188.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.9783;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.93;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4188,447,0 chrX 612134 . G A 3152 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.5074;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.25;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3185,333,0 chrX 612176 . A G 2246 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.81;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2279,255,0 chrX 612199 . C T 2048 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=21.11;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2081,216,0 chrX 612210 . A C 1990 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.63;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2023,219,0 chrX 612277 . C G 3050 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.80;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3083,333,0 chrX 612442 . C T 3331.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=26.02;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3331,346,0 chrX 612822 . A G 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=1.162;QD=24.04;ReadPosRankSum=1.669;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3990,429,0 chrX 612976 . T C 2197 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=83.8605;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=22.65;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2230,240,0 chrX 612990 . T C 2078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=6.114;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.885;QD=22.11;ReadPosRankSum=1.658;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2111,231,0 chrX 613133 . T C 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.380;DP=113;Dels=0.00;FS=4.951;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;MQRankSum=0.536;QD=22.75;ReadPosRankSum=3.209;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:4,109:113:99:2604,291,0 chrX 613234 . G A 2426 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.8554;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.46;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2459,258,0 chrX 613441 . T C 4795.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.86;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4795,519,0 chrX 614002 . G A 2517 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2550,270,0 chrX 614058 . A G 2998 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3031,330,0 chrX 614098 . A G 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=159;Dels=0.00;FS=6.215;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.043;QD=23.97;ReadPosRankSum=2.372;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3812,414,0 chrX 614329 . T A 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.8112;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.433;QD=23.94;ReadPosRankSum=1.693;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4237,439,0 chrX 614663 . T C 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.8942;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.047;QD=23.55;ReadPosRankSum=1.661;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3462,378,0 chrX 614716 . A T 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.278;QD=24.50;ReadPosRankSum=1.675;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:3046,324,0 chrX 614889 . T C 4043.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.10;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4043,435,0 chrX 615114 . T C 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=3.819;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.817;QD=21.63;ReadPosRankSum=1.710;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3461,372,0 chrX 615149 . G C 3137 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8689;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.64;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3170,339,0 chrX 615169 . C G 2944 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.73;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2977,324,0 chrX 615340 . A C 2903 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.80;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2936,318,0 chrX 615401 . C T 2426 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.55;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2459,261,0 chrX 615743 . G A 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=137;Dels=0.00;FS=3.212;HaplotypeScore=6.8216;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.680;QD=24.32;ReadPosRankSum=1.312;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3332,357,0 chrX 615792 . A G 3060 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.91;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3093,336,0 chrX 616115 . G A 2984 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3017,327,0 chrX 616200 . G C 2947 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.6118;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.67;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2980,324,0 chrX 616756 . C T 4853.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.33;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4853,517,0 chrX 617338 . G T 3224.03 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3257,345,0 chrX 617462 . A T 3208 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.9533;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=22.75;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3241,348,0 chrX 617649 . T C 3669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=158;Dels=0.00;FS=3.032;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.370;QD=23.22;ReadPosRankSum=2.402;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3669,396,0 chrX 617775 . T A 4300.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=24.29;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4300,448,0 chrX 617869 . T G 3755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=167;Dels=0.00;FS=3.456;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.275;QD=22.49;ReadPosRankSum=1.690;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3755,402,0 chrX 617903 . C T 4183.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.46;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4183,430,0 chrX 618030 . T C 56.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.973;DP=119;Dels=0.02;FS=0.000;HaplotypeScore=113.7948;MLEAC=1;MLEAF=0.500;MQ=50.32;MQ0=0;MQRankSum=1.627;QD=0.47;ReadPosRankSum=0.505;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:110,6:117:59:86,0,59 chrX 618031 . A T 202.01 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.02;FS=0.000;HaplotypeScore=113.0061;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=1.67;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:27:235,27,0 chrX 618088 . T A 2742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=148;Dels=0.00;FS=6.551;HaplotypeScore=5.7493;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=1.050;QD=18.53;ReadPosRankSum=2.245;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:2775,288,0 chrX 618157 . A G 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=152;Dels=0.00;FS=7.037;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.516;QD=22.47;ReadPosRankSum=2.351;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:3416,381,0 chrX 618202 . T A 3986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.2628;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-0.501;QD=25.72;ReadPosRankSum=1.664;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3986,420,0 chrX 618545 . C T 3819.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.43;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3819,408,0 chrX 618797 . G A 4879.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.9932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.95;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4879,514,0 chrX 619223 . G A 3781.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.08;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3781,397,0 chrX 619508 . T C 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=126;Dels=0.00;FS=3.656;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.718;QD=19.95;ReadPosRankSum=1.704;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,122:126:99:2547,285,0 chrX 619791 . A T 3165 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.62;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3198,336,0 chrX 620141 . A T 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.2460;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;MQRankSum=-0.024;QD=20.28;ReadPosRankSum=1.685;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1534,165,0 chrX 620176 . G A 1489 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=18.38;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1522,162,0 chrX 620205 . C A 2063 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=18.26;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2096,219,0 chrX 620255 . T A 2069 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.78;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2102,222,0 chrX 620267 . C A 2041 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.93;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2074,216,0 chrX 620371 . T C 1741 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6878;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=19.34;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1774,195,0 chrX 622386 . C T 4885.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=15.9796;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4885,508,0 chrX 623184 . C G 3180 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.4152;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=20.38;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3213,360,0 chrX 623186 . C T 3343.01 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.6812;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=21.71;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3343,354,0 chrX 623191 . C G 3062 SnpCluster AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.8306;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=19.50;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3095,333,0 chrX 623311 . C T 5655.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.1387;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:0,232:235:99:5655,586,0 chrX 623546 . A T 5335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=222;Dels=0.00;FS=3.212;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.457;QD=24.03;ReadPosRankSum=1.669;SB=-2.837e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:5335,559,0 chrX 623827 . G A 5474.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=18.0615;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.22;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5474,571,0 chrX 623961 . C T 7031.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=16.7945;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.38;SB=-3.442e+03 GT:AD:DP:GQ:PL 1/1:0,273:277:99:7031,724,0 chrX 624069 . T C 6640.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=15.4732;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.97;SB=-2.934e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:6640,726,0 chrX 624389 . A G 5564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=259;Dels=0.00;FS=5.352;HaplotypeScore=16.7683;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-0.112;QD=21.48;ReadPosRankSum=2.942;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:3,256:259:99:5564,598,0 chrX 624405 . T C 5322.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.37;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5322,577,0 chrX 624474 . C T 4066.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=22.6387;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.03;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4066,430,0 chrX 625937 . C T 3433.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.35;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3433,363,0 chrX 626304 . T C 3418.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.6346;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.24;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3418,366,0 chrX 627378 . T C 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=156;Dels=0.00;FS=3.027;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.528;QD=21.68;ReadPosRankSum=2.339;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3382,363,0 chrX 628891 . C T 4433.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.7707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4433,474,0 chrX 630829 . C T 4648.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.2342;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4648,490,0 chrX 631130 . G A 4340.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4340,459,0 chrX 633240 . A C 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.052;QD=23.01;ReadPosRankSum=1.700;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:2541,273,0 chrX 633360 . C T 2542 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.21;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2575,270,0 chrX 633463 . C T 3439.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.05;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3439,366,0 chrX 633743 . T C 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.3603;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.882;QD=22.69;ReadPosRankSum=1.711;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3698,399,0 chrX 634423 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.39;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2814,297,0 chrX 634484 . G C 3143 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.36;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3176,345,0 chrX 634657 . G C 2676 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.25;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2709,294,0 chrX 634727 . G A 2190 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.58;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2223,237,0 chrX 634739 . T A 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=101;Dels=0.00;FS=2.942;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-0.677;QD=21.06;ReadPosRankSum=2.401;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2160,231,0 chrX 635210 . A G 2953 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.89;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2986,324,0 chrX 635213 . T A 2943 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.64;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2976,318,0 chrX 635444 . C T 2801 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.15;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2834,297,0 chrX 636245 . G A 3129 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2389;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.45;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3162,333,0 chrX 636313 . C G 3464.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.0119;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.41;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3464,378,0 chrX 636485 . T C 4356.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=25.03;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4356,471,0 chrX 636506 . G A 4409.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.77;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4409,474,0 chrX 636651 . T C 4110.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.34;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4110,450,0 chrX 637056 . T C 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=125;Dels=0.00;FS=2.954;HaplotypeScore=14.3970;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=1.220;QD=18.25;ReadPosRankSum=2.370;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2314,252,0 chrX 637255 . C A 4310.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.1922;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=24.21;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4310,448,0 chrX 637392 . C T 6471.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.38;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:6471,676,0 chrX 637464 . C T 4447.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.84;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4447,472,0 chrX 637574 . C T 6352.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=13.6557;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.70;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6352,661,0 chrX 637795 . A G 8980.01 filter AC=2;AF=1.00;AN=2;DP=370;Dels=0.00;FS=0.000;HaplotypeScore=20.4239;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.27;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,362:370:99:8980,993,0 chrX 637967 . G A 8418.01 filter AC=2;AF=1.00;AN=2;DP=378;Dels=0.00;FS=0.000;HaplotypeScore=6.2295;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.27;SB=-4.704e+03 GT:AD:DP:GQ:PL 1/1:0,378:378:99:8418,883,0 chrX 637972 . T C 7949.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.982;DP=384;Dels=0.00;FS=10.446;HaplotypeScore=7.6467;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-0.544;QD=20.70;ReadPosRankSum=2.892;SB=-4.640e+03 GT:AD:DP:GQ:PL 1/1:3,379:384:99:7949,859,0 chrX 637980 . T A 8103.01 filter AC=2;AF=1.00;AN=2;DP=396;Dels=0.00;FS=0.000;HaplotypeScore=5.8792;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.46;SB=-4.294e+03 GT:AD:DP:GQ:PL 1/1:0,396:396:99:8103,880,0 chrX 638730 . T C 3541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=163;Dels=0.00;FS=6.378;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.387;QD=21.72;ReadPosRankSum=2.374;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3541,399,0 chrX 638901 . A G 4927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=242;Dels=0.00;FS=7.806;HaplotypeScore=21.2635;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.864;QD=20.36;ReadPosRankSum=2.368;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:2,238:242:99:4927,543,0 chrX 639041 . T C 4705.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.7940;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.68;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4705,513,0 chrX 639136 . G T 3218.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=13.7412;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.31;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3251,342,0 chrX 639220 . G T 382.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.560;DP=156;Dels=0.03;FS=167.896;HaplotypeScore=18.4741;MLEAC=1;MLEAF=0.500;MQ=47.77;MQ0=0;MQRankSum=-3.760;QD=2.45;ReadPosRankSum=-2.707;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,70:151:99:412,0,559 chrX 639221 . C T 334.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;DP=156;Dels=0.03;FS=156.559;HaplotypeScore=20.8401;MLEAC=1;MLEAF=0.500;MQ=47.77;MQ0=0;MQRankSum=-3.696;QD=2.14;ReadPosRankSum=-3.016;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,70:152:99:364,0,727 chrX 639226 . C T 129.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.543;DP=144;Dels=0.01;FS=104.955;HaplotypeScore=23.7415;MLEAC=1;MLEAF=0.500;MQ=49.40;MQ0=0;MQRankSum=-4.858;QD=0.90;ReadPosRankSum=-6.870;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,53:142:99:159,0,1069 chrX 639227 . A T 198.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.176;DP=145;Dels=0.01;FS=101.064;HaplotypeScore=23.7415;MLEAC=1;MLEAF=0.500;MQ=49.72;MQ0=0;MQRankSum=-5.481;QD=1.37;ReadPosRankSum=-7.973;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,50:143:99:228,0,1123 chrX 639270 . T C 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=119;Dels=0.02;FS=0.000;HaplotypeScore=10.6765;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=0.962;QD=20.39;ReadPosRankSum=1.703;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2460,270,0 chrX 639288 . C T 2752 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=21.33;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2785,288,0 chrX 639321 . A G 1752 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=14.72;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1785,195,0 chrX 639332 . A G 1518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=117;Dels=0.00;FS=2.370;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;MQRankSum=-1.319;QD=12.97;ReadPosRankSum=2.457;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:1551,171,0 chrX 639333 . T G 1496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;MQRankSum=-1.732;QD=13.01;ReadPosRankSum=1.702;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1529,168,0 chrX 639365 . A C 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=159;Dels=0.00;FS=7.304;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;MQRankSum=-0.430;QD=16.16;ReadPosRankSum=0.775;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:2602,285,0 chrX 639419 . G A 4398.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.9153;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=22.67;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4398,457,0 chrX 639497 . G C 2950 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=16.2976;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=20.77;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2983,330,0 chrX 639618 . A G 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=151;Dels=0.00;FS=2.707;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=1.647;QD=17.58;ReadPosRankSum=2.400;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:2688,297,0 chrX 639731 . T C 1545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.531;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;MQRankSum=0.000;QD=12.46;ReadPosRankSum=1.620;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:1578,171,0 chrX 639846 . G C 2351 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=22.18;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2384,258,0 chrX 639986 . G C 1128 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=42.6472;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;QD=15.89;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1161,129,0 chrX 640010 . C T 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.701;DP=47;Dels=0.00;FS=8.221;HaplotypeScore=10.1334;MLEAC=1;MLEAF=0.500;MQ=41.49;MQ0=0;MQRankSum=2.105;QD=0.26;ReadPosRankSum=-1.586;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:41,3:47:42:42,0,66 chrX 640012 . C T 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.944;DP=44;Dels=0.00;FS=7.912;HaplotypeScore=7.8801;MLEAC=1;MLEAF=0.500;MQ=39.76;MQ0=0;MQRankSum=1.718;QD=0.28;ReadPosRankSum=-2.395;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:42,2:44:42:42,0,68 chrX 640022 . C T 96.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.670;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=9.8368;MLEAC=1;MLEAF=0.500;MQ=42.05;MQ0=0;MQRankSum=-1.579;QD=1.92;ReadPosRankSum=2.442;SB=-3.130e+02 GT:AD:DP:GQ:PL 0/1:12,38:50:26:126,0,26 chrX 640024 . C T 225 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.997;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=10.8301;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;MQRankSum=-0.884;QD=4.25;ReadPosRankSum=1.923;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:6,47:53:30:258,30,0 chrX 640026 . C T 170.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.490;DP=53;Dels=0.00;FS=2.653;HaplotypeScore=11.8090;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;MQRankSum=0.303;QD=3.21;ReadPosRankSum=0.583;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:24:203,24,0 chrX 640028 . C T 192.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.661;DP=55;Dels=0.00;FS=4.616;HaplotypeScore=13.3863;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;MQRankSum=1.669;QD=3.49;ReadPosRankSum=0.661;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:27:225,27,0 chrX 640236 . A G 6800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=262;Dels=0.00;FS=8.484;HaplotypeScore=8.6263;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=1.586;QD=25.95;ReadPosRankSum=1.706;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,260:262:99:6800,736,0 chrX 640392 . C T 8273.01 filter AC=2;AF=1.00;AN=2;DP=398;Dels=0.00;FS=0.000;HaplotypeScore=29.7555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,395:398:99:8273,862,0 chrX 640468 . C T 5110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.166;DP=254;Dels=0.00;FS=4.312;HaplotypeScore=30.1728;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.048;QD=20.12;ReadPosRankSum=0.435;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:1,252:254:99:5110,514,0 chrX 640502 . G C 4341.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.02;FS=0.000;HaplotypeScore=29.8117;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=21.18;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4341,471,0 chrX 640718 . A G 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;MQRankSum=1.563;QD=23.40;ReadPosRankSum=1.708;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3393,369,0 chrX 641019 . G A 10787.01 filter AC=2;AF=1.00;AN=2;DP=469;Dels=0.00;FS=0.000;HaplotypeScore=28.9611;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.00;SB=-4.288e+03 GT:AD:DP:GQ:PL 1/1:0,463:469:99:10787,1147,0 chrX 641050 . A G 11013.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=542;Dels=0.00;FS=7.386;HaplotypeScore=27.1091;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.401;QD=20.32;ReadPosRankSum=2.413;SB=-6.082e+03 GT:AD:DP:GQ:PL 1/1:2,538:542:99:11013,1236,0 chrX 641346 . T C 8673.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=430;Dels=0.00;FS=2.507;HaplotypeScore=40.8850;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.587;QD=20.17;ReadPosRankSum=1.450;SB=-4.117e+03 GT:AD:DP:GQ:PL 1/1:3,427:430:99:8673,949,0 chrX 641571 . T C 4564.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.3886;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.93;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:4564,498,0 chrX 641631 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.75;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3785,423,0 chrX 641710 . C A 3897.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.66;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3897,411,0 chrX 641753 . G A 2564 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.0677;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.37;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2597,276,0 chrX 641813 . T G 1881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=90;Dels=0.00;FS=3.882;HaplotypeScore=9.0407;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.472;QD=20.90;ReadPosRankSum=1.693;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,87:90:99:1914,210,0 chrX 641821 . A T 1914 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=4.9641;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.06;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1947,204,0 chrX 641931 . T C 1558 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=14.16;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1591,177,0 chrX 642317 . T C 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.748;QD=20.47;ReadPosRankSum=1.712;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3643,399,0 chrX 642324 . A G 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=177;Dels=0.00;FS=3.955;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=0.259;QD=19.81;ReadPosRankSum=1.672;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:3506,390,0 chrX 642375 . C T 4065.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.22;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4065,424,0 chrX 642510 . T C 5151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=-1.026;QD=24.88;ReadPosRankSum=1.665;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:5151,556,0 chrX 642630 . A T 4244.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.22;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4244,445,0 chrX 643441 . G C 3746.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.56;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3746,420,0 chrX 643548 . C T 3746.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.3464;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.71;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3746,391,0 chrX 643787 . A G 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=145;Dels=0.00;FS=2.994;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.687;QD=25.30;ReadPosRankSum=2.416;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3668,396,0 chrX 643859 . A G 2397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=3.231;HaplotypeScore=7.7449;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.635;QD=23.73;ReadPosRankSum=1.664;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2430,270,0 chrX 643946 . C A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.93;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3316,348,0 chrX 644548 . T G 5011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.353;DP=213;Dels=0.00;FS=14.582;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.484;QD=23.53;ReadPosRankSum=3.378;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:4,207:213:99:5011,541,0 chrX 644706 . A T 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-1.530;QD=23.26;ReadPosRankSum=1.552;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3629,384,0 chrX 644952 . A C 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=137;Dels=0.00;FS=6.732;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;MQRankSum=0.486;QD=18.41;ReadPosRankSum=2.413;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,132:137:99:2555,282,0 chrX 644958 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=19.60;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2796,294,0 chrX 645000 . A G 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=175;Dels=0.00;FS=8.122;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=0.919;QD=19.91;ReadPosRankSum=2.393;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3485,387,0 chrX 645026 . G A 4260.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=23.54;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4260,439,0 chrX 645177 . A G 3738.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=23.36;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3738,399,0 chrX 645361 . A T 3107 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.27;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3140,327,0 chrX 645465 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=22.08;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3754,394,0 chrX 645479 . G C 3735.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=21.59;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3735,399,0 chrX 645498 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.62;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3459,358,0 chrX 645565 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.06;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3144,330,0 chrX 645972 . G A 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.6744;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.628;QD=22.70;ReadPosRankSum=-1.205;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3166,330,0 chrX 646018 . A C 2325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=2.812;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.080;QD=20.22;ReadPosRankSum=2.386;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2358,258,0 chrX 646155 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=19.38;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1932,204,0 chrX 646356 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.0595;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=25.97;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,124:127:99:3298,351,0 chrX 646395 . T A 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=132;Dels=0.00;FS=2.570;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=0.046;QD=25.49;ReadPosRankSum=2.932;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:3365,349,0 chrX 646407 . C T 3296.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=24.60;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3296,345,0 chrX 646496 . T C 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=133;Dels=0.00;FS=3.044;HaplotypeScore=9.5939;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.699;QD=23.14;ReadPosRankSum=2.357;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:3110,342,0 chrX 646557 . T A 3324.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=135.6398;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=22.92;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3324,346,0 chrX 646595 . C T 2720 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=128.0960;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=18.50;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2753,306,0 chrX 646775 . T A 3006 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=10.7842;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.43;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3039,321,0 chrX 646873 . G A 3482.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=23.85;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3482,361,0 chrX 646879 . G A 3430.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=23.33;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3430,360,0 chrX 646927 . G A 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.873;DP=127;Dels=0.00;FS=3.261;HaplotypeScore=12.3201;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=0.513;QD=20.58;ReadPosRankSum=-0.097;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2647,258,0 chrX 647115 . C T 3732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.976;DP=169;Dels=0.01;FS=4.322;HaplotypeScore=30.8903;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=0.325;QD=22.08;ReadPosRankSum=-0.892;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3732,366,0 chrX 647136 . A G 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=173;Dels=0.00;FS=12.805;HaplotypeScore=12.9835;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=1.287;QD=22.58;ReadPosRankSum=2.901;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:99:3907,423,0 chrX 647196 . C T 2926 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.05;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2959,315,0 chrX 647651 . T C 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.990;QD=24.66;ReadPosRankSum=2.418;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3823,417,0 chrX 647957 . C T 3827.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.92;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3827,403,0 chrX 648002 . C T 4316.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.38;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4316,451,0 chrX 648026 . T A 4534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.603;QD=25.05;ReadPosRankSum=1.693;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4534,469,0 chrX 648251 . C A 4437.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.38;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4437,466,0 chrX 648431 . T C 3396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=158;Dels=0.00;FS=8.905;HaplotypeScore=8.0419;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.957;QD=21.49;ReadPosRankSum=2.387;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3396,369,0 chrX 648461 . G A 3789.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.9747;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.69;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3789,405,0 chrX 648638 . T C 2922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.4973;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.252;QD=19.35;ReadPosRankSum=2.385;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:2955,318,0 chrX 649035 . G A 3370.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3370,354,0 chrX 649585 . G A 4524.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=25.56;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4524,472,0 chrX 649659 . T C 4255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=194;Dels=0.00;FS=6.053;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.269;QD=21.93;ReadPosRankSum=2.933;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:4255,456,0 chrX 649660 . T C 4270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=195;Dels=0.00;FS=3.023;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.422;QD=21.90;ReadPosRankSum=2.374;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4270,453,0 chrX 649976 . A G 4143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.143;DP=186;Dels=0.00;FS=2.960;HaplotypeScore=11.1702;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-1.582;QD=22.27;ReadPosRankSum=2.410;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:2,182:186:99:4143,447,0 chrX 650077 . T C 3463.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.1534;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=22.78;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3463,378,0 chrX 650265 . T C 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=133;Dels=0.00;FS=8.180;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;MQRankSum=-0.312;QD=20.02;ReadPosRankSum=2.374;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:2,128:133:99:2695,291,0 chrX 650270 . T C 2510 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=19.61;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2543,279,0 chrX 650297 . C T 2171 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=18.24;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2204,228,0 chrX 650299 . G A 2129 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=18.35;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2162,225,0 chrX 650350 . A G 2118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.827;QD=18.91;ReadPosRankSum=1.670;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2151,231,0 chrX 650406 . G A 2851 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.37;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2884,300,0 chrX 650585 . A G 3560.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.5889;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.38;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3560,399,0 chrX 650625 . G A 4314.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=25.23;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4314,451,0 chrX 650654 . C G 3819.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.57;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3819,411,0 chrX 650707 . A G 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=164;Dels=0.00;FS=7.707;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.281;QD=23.64;ReadPosRankSum=2.343;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:2,160:164:99:3877,426,0 chrX 650894 . A G 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.5926;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=-0.324;QD=21.91;ReadPosRankSum=1.713;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4010,435,0 chrX 650906 . G A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.6545;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=22.16;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4077,444,0 chrX 651009 . A C 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.720;DP=153;Dels=0.00;FS=16.389;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.652;QD=20.54;ReadPosRankSum=3.679;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:5,148:153:99:3175,354,0 chrX 651022 . T C 3125 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.2291;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=20.83;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3158,339,0 chrX 651084 . T C 2294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=154;Dels=0.00;FS=3.757;HaplotypeScore=5.7865;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;MQRankSum=-1.094;QD=14.90;ReadPosRankSum=1.687;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:2327,255,0 chrX 651089 . T C 2405 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.4074;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=16.25;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2438,270,0 chrX 651105 . T A 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=4.241;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=0.337;QD=18.75;ReadPosRankSum=1.687;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2940,309,0 chrX 651274 . C T 3085 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=22.36;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3118,336,0 chrX 651313 . A G 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=1.470;QD=20.52;ReadPosRankSum=1.674;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2496,276,0 chrX 651316 . G T 2467 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=21.64;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2500,261,0 chrX 651374 . G T 2478 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=21.74;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2511,261,0 chrX 651493 . C T 2936 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=22.41;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2969,309,0 chrX 651514 . A C 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=3.514;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-1.252;QD=21.09;ReadPosRankSum=1.707;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2964,321,0 chrX 651546 . C T 2690 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=18.42;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2723,288,0 chrX 651562 . G T 2458 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=16.72;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:2491,270,0 chrX 651602 . T A 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=143;Dels=0.00;FS=2.839;HaplotypeScore=4.2020;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-1.298;QD=19.32;ReadPosRankSum=2.415;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2796,291,0 chrX 651656 . G C 2386 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.7205;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=19.56;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,118:122:99:2419,261,0 chrX 651666 . C T 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=116;Dels=0.00;FS=2.919;HaplotypeScore=6.5010;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;MQRankSum=-0.562;QD=19.44;ReadPosRankSum=2.407;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2288,240,0 chrX 651668 . A C 2216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=119;Dels=0.00;FS=5.762;HaplotypeScore=7.2896;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;MQRankSum=-0.274;QD=18.62;ReadPosRankSum=2.941;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2249,246,0 chrX 651838 . T C 2977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=1.207;QD=22.38;ReadPosRankSum=1.680;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3010,330,0 chrX 652362 . T C 6729.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=10.3690;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.21;SB=-3.257e+03 GT:AD:DP:GQ:PL 1/1:0,303:303:99:6729,753,0 chrX 652783 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.0600;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=25.66;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3163,333,0 chrX 652822 . G T 2921 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.01;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2954,309,0 chrX 652831 . C T 3027 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=22.26;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3060,321,0 chrX 652865 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.91;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3103,321,0 chrX 653144 . A G 4008.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.86;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4008,438,0 chrX 653249 . T C 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=166;Dels=0.00;FS=6.210;HaplotypeScore=9.7556;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.309;QD=22.93;ReadPosRankSum=2.419;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:3807,414,0 chrX 653590 . T C 4497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=191;Dels=0.00;FS=6.046;HaplotypeScore=5.0914;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.490;QD=23.54;ReadPosRankSum=2.869;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:4497,489,0 chrX 653755 . T C 4245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=183;Dels=0.00;FS=3.486;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.051;QD=23.20;ReadPosRankSum=1.675;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4245,465,0 chrX 654221 . A G 3223.06 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.9148;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.93;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3256,354,0 chrX 654313 . T A 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=3.511;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=-0.463;QD=23.22;ReadPosRankSum=1.629;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2378,246,0 chrX 654472 . A G 2168 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.82;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2201,246,0 chrX 654502 . C T 2361 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.85;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2394,249,0 chrX 654612 . A T 1993 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.20;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2026,216,0 chrX 654625 . C T 2005 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=19.85;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2038,216,0 chrX 655074 . T C 4023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=3.914;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.157;QD=24.38;ReadPosRankSum=1.690;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4023,432,0 chrX 655282 . T C 5017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=209;Dels=0.00;FS=2.567;HaplotypeScore=18.4161;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.851;QD=24.00;ReadPosRankSum=2.899;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:3,206:209:99:5017,552,0 chrX 655382 . G A 4429.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.4650;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.56;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4429,483,0 chrX 655475 . C T 3909.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=16.8862;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.72;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3909,412,0 chrX 655589 . A G 4316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=197;Dels=0.00;FS=2.706;HaplotypeScore=15.3726;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.006;QD=21.91;ReadPosRankSum=2.399;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:2,192:197:99:4316,477,0 chrX 655670 . G A 4255.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.6996;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.45;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4255,456,0 chrX 655865 . C T 5437.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.3045;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.17;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5437,568,0 chrX 656454 . A G 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.244;DP=188;Dels=0.00;FS=8.872;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.427;QD=21.34;ReadPosRankSum=3.385;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:4,182:188:99:4011,435,0 chrX 656567 . C T 4018.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.92;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4018,418,0 chrX 656822 . T C 5538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=224;Dels=0.00;FS=2.898;HaplotypeScore=13.4961;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.327;QD=24.72;ReadPosRankSum=2.372;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:2,221:224:99:5538,600,0 chrX 656961 . A G 5336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.6741;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.862;QD=23.82;ReadPosRankSum=1.670;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:5336,585,0 chrX 657034 . A G 4712.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.21;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4712,519,0 chrX 657067 . C G 4293.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.48;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4293,465,0 chrX 657109 . C T 4077.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.01;FS=0.000;HaplotypeScore=13.8276;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.78;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4077,424,0 chrX 657265 . A C 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;DP=154;Dels=0.00;FS=9.149;HaplotypeScore=12.6996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.543;QD=20.77;ReadPosRankSum=3.173;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:4,149:154:99:3231,354,0 chrX 657406 . C T 4167.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.8951;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.80;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4167,436,0 chrX 657541 . A G 2424 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=12.7749;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.90;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,112:116:99:2457,276,0 chrX 657858 . A G 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=3.413;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.789;QD=23.90;ReadPosRankSum=1.666;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3800,417,0 chrX 657928 . A G 3571.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.04;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3571,387,0 chrX 657933 . T C 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=164;Dels=0.00;FS=3.034;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-1.176;QD=20.61;ReadPosRankSum=2.360;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3380,372,0 chrX 658012 . T C 4113.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.9425;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.98;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4113,450,0 chrX 658094 . G A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.27;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3608,381,0 chrX 658911 . T C 1728 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.134;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;MQRankSum=0.210;QD=15.85;ReadPosRankSum=1.700;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:1761,189,0 chrX 658914 . G T 1818 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=16.53;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1851,198,0 chrX 658916 . C T 1820 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=15.83;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1853,195,0 chrX 659243 . T C 3737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=3.136;HaplotypeScore=9.3224;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.742;QD=21.23;ReadPosRankSum=1.673;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3737,402,0 chrX 659269 . C G 4150.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.39;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4150,453,0 chrX 661171 . T C 4680.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4680,510,0 chrX 661626 . T C 4891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=208;Dels=0.00;FS=2.697;HaplotypeScore=10.3322;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.638;QD=23.51;ReadPosRankSum=2.342;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:2,204:208:99:4891,526,0 chrX 661870 . T C 6218.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=18.2616;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.03;SB=-3.066e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:6218,678,0 chrX 662262 . T C 6094.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=9.9488;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.53;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:6094,663,0 chrX 662293 . G A 5656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.990;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=17.8503;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.630;QD=23.47;ReadPosRankSum=1.412;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5656,598,0 chrX 662479 . A G 4334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.332;QD=22.81;ReadPosRankSum=1.695;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4334,486,0 chrX 663013 . A C 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=160;Dels=0.00;FS=15.074;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.516;QD=22.18;ReadPosRankSum=2.931;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3548,402,0 chrX 663082 . A G 3646.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.5402;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=19.60;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3646,396,0 chrX 663083 . A G 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=188;Dels=0.00;FS=8.700;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;MQRankSum=-0.571;QD=19.65;ReadPosRankSum=2.423;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:3694,399,0 chrX 663098 . A G 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.170;DP=215;Dels=0.02;FS=10.009;HaplotypeScore=50.9576;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;MQRankSum=-0.401;QD=17.28;ReadPosRankSum=2.403;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:3716,405,0 chrX 663261 . T G 4379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-0.646;QD=19.81;ReadPosRankSum=1.496;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:4379,474,0 chrX 663511 . T C 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=4.669;HaplotypeScore=4.9816;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-1.237;QD=21.30;ReadPosRankSum=1.705;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2760,303,0 chrX 663534 . A T 2763 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.10;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2796,294,0 chrX 663590 . A C 2280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=122;Dels=0.00;FS=2.681;HaplotypeScore=8.9660;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.093;QD=18.69;ReadPosRankSum=2.408;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:2,117:122:99:2313,252,0 chrX 663682 . G A 2771 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.48;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2804,294,0 chrX 663968 . T A 1681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=126;Dels=0.00;FS=2.779;HaplotypeScore=8.0785;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=0.912;QD=13.34;ReadPosRankSum=2.368;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:5,121:126:99:1714,192,0 chrX 664155 . G T 4655.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.0926;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=24.63;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4655,487,0 chrX 664236 . C T 6135.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=20.3821;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.33;SB=-3.220e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:6135,640,0 chrX 664288 . T C 5193.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.48;SB=-2.821e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5193,564,0 chrX 664330 . T C 4493.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.58;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4493,483,0 chrX 664690 . C T 6119.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=16.6290;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.81;SB=-3.604e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:6119,634,0 chrX 664824 . A G 6251.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=13.5658;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.48;SB=-3.679e+03 GT:AD:DP:GQ:PL 1/1:0,289:291:99:6251,681,0 chrX 665027 . T C 4010.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.78;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4010,435,0 chrX 665051 . T C 3815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=190;Dels=0.00;FS=11.792;HaplotypeScore=5.0564;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.110;QD=20.08;ReadPosRankSum=2.372;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:3815,411,0 chrX 665076 . C T 3353.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.5638;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.83;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3353,346,0 chrX 665172 . T C 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.326;QD=23.86;ReadPosRankSum=1.707;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3316,357,0 chrX 665597 . C T 2493 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.8490;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.13;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2526,267,0 chrX 666046 . T C 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=1.029;QD=22.21;ReadPosRankSum=1.707;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3120,342,0 chrX 666087 . G A 3319.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.9879;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.41;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3319,345,0 chrX 666095 . G A 3364.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.5653;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.29;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3364,354,0 chrX 666164 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.7051;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.37;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3981,415,0 chrX 666321 . A C 3135 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.22;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3168,351,0 chrX 666422 . C T 4009.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.5488;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.15;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4009,420,0 chrX 666492 . T C 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=3.323;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.131;QD=21.61;ReadPosRankSum=1.708;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3145,348,0 chrX 666622 . A G 3790.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.69;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3790,411,0 chrX 667036 . A C 1798 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1831,192,0 chrX 667126 . T C 1532 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=18.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1565,171,0 chrX 667152 . C G 1759 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.54;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1792,195,0 chrX 667389 . A T 1684 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.73;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1717,180,0 chrX 667452 . C T 2373 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.37;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2406,249,0 chrX 667627 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.23;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3659,384,0 chrX 667686 . A G 4336.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.66;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4336,465,0 chrX 667766 . G A 3742.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3742,391,0 chrX 667942 . T G 3405.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.4432;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.15;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3405,375,0 chrX 668091 . G C 3667.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.32;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,168:172:99:3667,396,0 chrX 668102 . A G 3442.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.06;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3442,375,0 chrX 668331 . C T 2983 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=15.3039;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=19.75;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3016,315,0 chrX 668397 . G A 2816 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2849,291,0 chrX 668528 . T C 4288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.018;QD=25.99;ReadPosRankSum=1.711;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4288,456,0 chrX 668723 . A T 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.108;QD=23.36;ReadPosRankSum=1.689;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3785,408,0 chrX 669077 . G A 3307.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3307,345,0 chrX 669427 . G A 2904 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.5640;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.34;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2937,312,0 chrX 669743 . A C 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.690;QD=23.75;ReadPosRankSum=1.711;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3942,426,0 chrX 670398 . T C 4087.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.35;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4087,444,0 chrX 670831 . G A 4136.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=18.5428;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=22.73;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4136,433,0 chrX 671070 . G A 4032.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.6105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4032,418,0 chrX 671129 . T A 4130.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.65;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4130,433,0 chrX 671183 . C G 3894.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.65;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3894,426,0 chrX 671270 . T C 4609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=188;Dels=0.00;FS=3.028;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.676;QD=24.52;ReadPosRankSum=2.423;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:4609,495,0 chrX 671861 . T C 3661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=149;Dels=0.00;FS=2.634;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.091;QD=24.57;ReadPosRankSum=2.400;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3661,396,0 chrX 671903 . A G 3758.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.5574;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.34;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3758,405,0 chrX 672311 . C T 4158.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.5612;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4158,447,0 chrX 672566 . C T 3711.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.10;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3711,402,0 chrX 672728 . G A 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.7598;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=0.887;QD=22.34;ReadPosRankSum=0.996;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2937,306,0 chrX 672768 . G A 2365 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=21.90;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2398,255,0 chrX 673554 . C T 5340.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.38;SB=-2.932e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5340,556,0 chrX 673602 . G A 5372.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.9794;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=23.98;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5372,562,0 chrX 673954 . A G 4594.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.0875;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.57;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4594,498,0 chrX 674143 . G C 3897.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.7731;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.20;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3897,426,0 chrX 674570 . G A 3070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.674;QD=23.08;ReadPosRankSum=1.097;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3103,336,0 chrX 674656 . T A 3388.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3388,357,0 chrX 675076 . T C 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.971;DP=127;Dels=0.00;FS=5.186;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.063;QD=22.88;ReadPosRankSum=3.360;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:4,122:127:99:2939,318,0 chrX 675286 . T A 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=3.608;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.643;QD=22.98;ReadPosRankSum=1.707;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3250,345,0 chrX 675709 . G A 6696.01 PASS AC=2;AF=1.00;AN=2;DP=351;Dels=0.00;FS=0.000;HaplotypeScore=13.8123;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=19.08;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,351:351:99:6696,709,0 chrX 676487 . C T 3752.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3752,391,0 chrX 676578 . A G 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=132;Dels=0.00;FS=6.822;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.047;QD=20.56;ReadPosRankSum=2.393;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2747,303,0 chrX 676590 . G A 2859 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=20.57;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2892,303,0 chrX 677087 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=144;Dels=0.00;FS=2.887;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.435;QD=23.38;ReadPosRankSum=2.381;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3366,366,0 chrX 677297 . C T 2432 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.08;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2465,261,0 chrX 677369 . T C 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-0.636;QD=22.39;ReadPosRankSum=1.697;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2227,243,0 chrX 677385 . T C 1854 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=60.3615;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.37;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1887,207,0 chrX 677705 . T C 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=130;Dels=0.00;FS=3.038;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=-0.629;QD=20.42;ReadPosRankSum=2.411;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:2,125:130:99:2687,288,0 chrX 677706 . T C 2642 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=20.80;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2675,291,0 chrX 677717 . T C 2544 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=19.87;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2577,291,0 chrX 677952 . T C 2653 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.6853;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.42;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2686,297,0 chrX 678445 . C T 6016.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.16;SB=-3.154e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:6016,628,0 chrX 678464 . T C 6192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=1.206;QD=22.85;ReadPosRankSum=1.694;SB=-3.605e+03 GT:AD:DP:GQ:PL 1/1:1,269:271:99:6192,675,0 chrX 678652 . T C 3755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.7568;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.525;QD=21.21;ReadPosRankSum=1.158;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3755,405,0 chrX 678760 . A T 2782 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.08;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2815,291,0 chrX 680142 . T C 4368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.4999;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.055;QD=22.75;ReadPosRankSum=1.696;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:4368,474,0 chrX 680328 . G A 6137.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=18.2556;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.56;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,268:272:99:6137,664,0 chrX 680733 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3559,378,0 chrX 680856 . C A 4393.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.00;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4393,463,0 chrX 680931 . A G 4062.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4062,441,0 chrX 681144 . C G 5416.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=12.0069;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5416,588,0 chrX 681414 . T C 4656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=197;Dels=0.00;FS=7.644;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=0.517;QD=23.63;ReadPosRankSum=2.412;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4656,507,0 chrX 681476 . C T 4571.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4571,486,0 chrX 681606 . T C 4907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.7775;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.767;QD=24.17;ReadPosRankSum=1.698;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4907,531,0 chrX 681843 . G A 4175.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4175,433,0 chrX 682344 . T A 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.059;QD=23.64;ReadPosRankSum=1.615;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2846,303,0 chrX 682740 . T C 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=154;Dels=0.00;FS=6.759;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.487;QD=22.17;ReadPosRankSum=2.402;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3414,369,0 chrX 682784 . A T 3348.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3348,351,0 chrX 683353 . G A 4196.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5454;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.54;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4196,444,0 chrX 683484 . G C 3600.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3600,384,0 chrX 683550 . G A 3578.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.8508;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.82;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3578,373,0 chrX 683820 . A G 3717.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.83;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3717,402,0 chrX 683975 . T C 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=4.270;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.636;QD=22.77;ReadPosRankSum=1.657;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3198,345,0 chrX 684045 . G T 1964 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=18.88;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1997,213,0 chrX 684046 . T A 2042 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=20.02;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2075,222,0 chrX 684047 . G A 2065 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=19.86;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2098,222,0 chrX 684348 . A G 3683.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.88;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3683,408,0 chrX 684510 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.22;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3708,390,0 chrX 684758 . G C 3886.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.9155;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.99;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3886,420,0 chrX 684785 . T C 3779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=168;Dels=0.00;FS=7.274;HaplotypeScore=9.5968;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.329;QD=22.49;ReadPosRankSum=2.420;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3779,408,0 chrX 685154 . A G 3375.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.8024;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.19;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3375,363,0 chrX 685208 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.67;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3440,358,0 chrX 686511 . G A 2470 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.05;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2503,264,0 chrX 686719 . A C 2472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.299;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.493;QD=22.68;ReadPosRankSum=1.700;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2505,273,0 chrX 686736 . A G 2586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.710;DP=134;Dels=0.00;FS=4.748;HaplotypeScore=15.6116;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=0.843;QD=19.30;ReadPosRankSum=2.529;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:4,128:134:99:2619,249,0 chrX 686919 . C T 4157.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=25.66;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4157,436,0 chrX 687283 . A G 3281.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3281,354,0 chrX 687329 . A G 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.658;QD=23.19;ReadPosRankSum=1.678;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3025,324,0 chrX 687612 . G A 3951.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.7498;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.54;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3951,412,0 chrX 687719 . T C 4207.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.77;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4207,456,0 chrX 688286 . A G 3123 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.66;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3156,351,0 chrX 688529 . T C 4409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.9733;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.679;QD=22.61;ReadPosRankSum=1.625;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4409,489,0 chrX 688898 . C T 3501.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.34;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3501,375,0 chrX 689090 . C T 3443.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3443,363,0 chrX 689592 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.6654;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.99;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3425,360,0 chrX 690126 . A G 3508.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.9084;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3508,381,0 chrX 690963 . G T 3823.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.5430;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.85;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3823,400,0 chrX 691035 . T A 5051.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.9956;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5051,523,0 chrX 691434 . A G 2480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=115;Dels=0.00;FS=6.214;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=-0.766;QD=21.57;ReadPosRankSum=2.407;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2513,282,0 chrX 691772 . C T 2582 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.69;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2615,270,0 chrX 692064 . G A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.39;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3257,354,0 chrX 692082 . A G 2893 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.52;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2926,318,0 chrX 692163 . A T 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.7056;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.277;QD=24.27;ReadPosRankSum=1.673;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4271,456,0 chrX 692311 . C A 4265.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.9269;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=26.01;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4265,448,0 chrX 692358 . G A 4256.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.6148;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.89;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4256,459,0 chrX 692544 . T G 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=161;Dels=0.00;FS=6.784;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.404;QD=23.81;ReadPosRankSum=2.419;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3834,417,0 chrX 692661 . G A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.17;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3846,420,0 chrX 692804 . C T 5112.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.43;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5112,532,0 chrX 692865 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.10;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3808,397,0 chrX 693120 . C T 5028.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.89;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5028,529,0 chrX 693176 . T C 3650.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.86;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3650,402,0 chrX 693187 . T C 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=149;Dels=0.00;FS=2.944;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.091;QD=19.56;ReadPosRankSum=2.367;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:2948,321,0 chrX 693257 . G A 3013 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.07;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3046,318,0 chrX 694022 . T C 3135 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.18;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3168,342,0 chrX 694041 . T C 2581 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.48;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2614,288,0 chrX 694162 . T G 4077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=175;Dels=0.00;FS=3.572;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.512;QD=23.30;ReadPosRankSum=1.672;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:4077,438,0 chrX 694296 . A G 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-1.429;QD=23.36;ReadPosRankSum=1.707;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3256,348,0 chrX 694443 . G A 2932 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.05;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2965,312,0 chrX 694458 . A G 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=3.565;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.790;QD=21.53;ReadPosRankSum=1.677;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2767,297,0 chrX 694479 . A G 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=130;Dels=0.00;FS=3.912;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.162;QD=22.18;ReadPosRankSum=1.678;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2917,318,0 chrX 694743 . A C 3712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.6999;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.556;QD=22.36;ReadPosRankSum=1.690;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3712,399,0 chrX 695217 . C T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.6934;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.60;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3354,351,0 chrX 695253 . C T 3591.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.43;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3591,384,0 chrX 695712 . G C 4453.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=16.6130;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.20;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4453,483,0 chrX 696001 . C G 4304.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.65;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4304,468,0 chrX 696080 . G A 3817.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3817,400,0 chrX 696477 . A G 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=4.412;HaplotypeScore=15.9249;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.075;QD=22.59;ReadPosRankSum=1.672;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3953,429,0 chrX 696739 . C G 4496.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.5547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4496,492,0 chrX 696866 . G T 4269.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.52;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4269,445,0 chrX 697206 . G A 3057 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.7015;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.16;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3090,324,0 chrX 697486 . T C 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.6689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.187;QD=23.84;ReadPosRankSum=1.682;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3337,372,0 chrX 697654 . G A 3126 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=14.5547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.17;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3159,330,0 chrX 697926 . C T 3995.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.8268;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.96;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3995,415,0 chrX 697940 . G A 4051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.080;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.3712;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.596;QD=21.66;ReadPosRankSum=-0.112;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4051,399,0 chrX 698028 . A T 3706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.212;DP=164;Dels=0.00;FS=8.841;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.220;QD=22.60;ReadPosRankSum=3.341;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:4,160:164:99:3706,396,0 chrX 698322 . A T 3976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=154;Dels=0.00;FS=8.995;HaplotypeScore=13.8078;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.120;QD=25.82;ReadPosRankSum=2.418;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3976,420,0 chrX 698725 . C T 5101.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.2242;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.64;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5101,538,0 chrX 698785 . A G 4839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=216;Dels=0.00;FS=3.547;HaplotypeScore=11.8262;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.619;QD=22.40;ReadPosRankSum=1.716;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4839,537,0 chrX 698908 . A G 4426.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.13;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4426,480,0 chrX 699021 . T C 4976.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.47;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4976,537,0 chrX 699058 . A T 3856.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.82;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3856,403,0 chrX 699108 . T C 3919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=17.4169;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.059;QD=22.27;ReadPosRankSum=1.692;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3919,429,0 chrX 699217 . A G 4807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=205;Dels=0.00;FS=3.074;HaplotypeScore=13.4036;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.397;QD=23.45;ReadPosRankSum=1.648;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4807,525,0 chrX 699340 . G A 10095.01 filter AC=2;AF=1.00;AN=2;DP=390;Dels=0.00;FS=0.000;HaplotypeScore=16.0244;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.88;SB=-3.140e+03 GT:AD:DP:GQ:PL 1/1:0,389:390:99:10095,1066,0 chrX 699851 . G A 7266.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=11.2249;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.41;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:0,284:286:99:7266,754,0 chrX 700528 . G A 4999.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.1960;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4999,532,0 chrX 701241 . T A 3101 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=25.0187;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.63;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3134,330,0 chrX 701326 . C T 4766.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.0081;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.07;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4766,493,0 chrX 701478 . C T 4417.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.14;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4417,466,0 chrX 701601 . T C 4536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=191;Dels=0.00;FS=7.766;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-1.028;QD=23.75;ReadPosRankSum=2.385;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4536,495,0 chrX 701827 . C T 2199 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=17.18;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2232,231,0 chrX 701892 . A G 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=3.033;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=0.538;QD=20.93;ReadPosRankSum=2.354;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2189,246,0 chrX 701906 . T C 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=119;Dels=0.00;FS=3.123;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=-0.370;QD=17.99;ReadPosRankSum=1.673;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2174,237,0 chrX 701912 . G A 2499 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.11;MQ0=0;QD=19.83;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,122:126:99:2532,264,0 chrX 701944 . C G 2850 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=18.87;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2883,315,0 chrX 702129 . G A 1956.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.079;DP=448;Dels=0.00;FS=97.052;HaplotypeScore=14.2687;MLEAC=1;MLEAF=0.500;MQ=47.89;MQ0=25;MQRankSum=-11.253;QD=4.37;ReadPosRankSum=2.972;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:312,134:448:99:1986,0,6092 chrX 702141 . A G 5732.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.599;DP=432;Dels=0.00;FS=100.350;HaplotypeScore=37.1428;MLEAC=1;MLEAF=0.500;MQ=48.26;MQ0=29;MQRankSum=11.194;QD=13.27;ReadPosRankSum=0.659;SB=-1.628e+03 GT:AD:DP:GQ:PL 0/1:127,303:432:99:5732,0,1737 chrX 702597 . C A 9371.01 filter AC=2;AF=1.00;AN=2;DP=433;Dels=0.00;FS=0.000;HaplotypeScore=19.3645;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=26;QD=21.64;SB=-3.710e+03 GT:AD:DP:GQ:PL 1/1:0,433:433:99:9371,1006,0 chrX 702874 . G A 1845 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=17.3971;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=16.18;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1878,204,0 chrX 702912 . C T 1565 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=115.2402;MLEAC=2;MLEAF=1.00;MQ=44.42;MQ0=0;QD=13.73;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1598,168,0 chrX 702917 . C T 1516 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=103.7937;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=0;QD=13.66;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1549,162,0 chrX 702981 . G A 1035 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.5538;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=17.25;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1068,114,0 chrX 702986 . C T 1065 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=5.9070;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=18.36;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1098,120,0 chrX 703226 . G A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=27.06;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3437,355,0 chrX 703327 . G A 1361 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.44;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1394,147,0 chrX 703332 . T C 1274 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=17.22;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1307,144,0 chrX 703339 . A G 1176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.736;QD=15.68;ReadPosRankSum=1.590;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,72:75:99:1209,135,0 chrX 703431 . C A 3789.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=25.26;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3789,394,0 chrX 703467 . C A 3546.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.2384;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=23.96;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3546,378,0 chrX 703504 . G A 2810 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.66;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2843,306,0 chrX 703814 . C T 6626.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=34.7273;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.39;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,292:296:99:6626,700,0 chrX 703858 . G A 5329.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5329,556,0 chrX 703893 . C T 4475.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=19.1495;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.59;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,177:182:99:4475,472,0 chrX 704310 . C T 5928.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=22.5520;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.54;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:5928,622,0 chrX 704425 . G A 3560.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=21.19;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3560,375,0 chrX 704426 . C A 3580.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=21.44;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3580,375,0 chrX 704499 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=20.1733;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=17.67;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,147:157:99:2807,303,0 chrX 704535 . G A 3282.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.65;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3282,348,0 chrX 704699 . G A 3709.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.2818;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=23.33;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3709,393,0 chrX 704768 . C G 3429.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.2639;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=22.27;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3429,384,0 chrX 704827 . G A 4847.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.7756;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.86;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4847,519,0 chrX 704987 . G A 4509.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=5.9881;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.31;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4509,481,0 chrX 704998 . C T 4146.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=17.95;SB=-3.107e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4146,436,0 chrX 705014 . T C 4328.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.3342;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=18.26;SB=-2.974e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4328,471,0 chrX 705055 . T C 4162.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.7176;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=17.71;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:4162,450,0 chrX 705442 . T C 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=149;Dels=0.00;FS=6.933;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-1.524;QD=19.70;ReadPosRankSum=2.365;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:2,144:149:99:2968,330,0 chrX 705450 . C T 2954 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.95;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2987,312,0 chrX 705542 . A G 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.168;DP=133;Dels=0.00;FS=2.860;HaplotypeScore=11.3313;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.216;QD=21.76;ReadPosRankSum=2.412;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:2,129:133:99:2927,312,0 chrX 705639 . C T 2969 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=23.75;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3002,309,0 chrX 705848 . G C 3419.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=21.92;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3419,375,0 chrX 705865 . C T 3196 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=21.89;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3229,339,0 chrX 705917 . A G 2456 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=17.67;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2489,273,0 chrX 705920 . T C 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.042;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;MQRankSum=0.187;QD=17.58;ReadPosRankSum=1.707;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2477,264,0 chrX 706135 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.8644;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=24.60;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4010,435,0 chrX 706196 . G T 5599.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.6376;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.56;SB=-2.821e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:5599,598,0 chrX 706547 . A G 4342.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.39;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4342,468,0 chrX 706608 . A T 5495.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.29;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5495,571,0 chrX 707018 . G A 2493 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2526,273,0 chrX 707089 . G A 2848 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2881,303,0 chrX 707205 . T C 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.190;QD=24.53;ReadPosRankSum=1.711;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4072,444,0 chrX 707260 . G A 3834.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.8989;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.11;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3834,403,0 chrX 707333 . C T 2577 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.9100;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=17.77;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,132:145:99:2610,282,0 chrX 707549 . G A 2827 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.42;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2860,303,0 chrX 707550 . C A 2881 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.83;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2914,303,0 chrX 707903 . A T 4160.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.50;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4160,436,0 chrX 708177 . G A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.51;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3386,354,0 chrX 708302 . T C 1771 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;QD=19.25;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1804,201,0 chrX 708320 . A C 1567 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=16.15;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1600,177,0 chrX 708329 . G A 1632 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=16.48;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1665,174,0 chrX 708347 . C G 1223 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=13.59;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1256,138,0 chrX 708349 . C G 1219 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=13.54;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1252,135,0 chrX 708426 . A T 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.708;QD=25.85;ReadPosRankSum=1.683;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1868,192,0 chrX 708500 . C A 1371 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;QD=21.76;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1404,153,0 chrX 708504 . G T 1336 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=47.3589;MLEAC=2;MLEAF=1.00;MQ=42.33;MQ0=0;QD=20.55;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1369,144,0 chrX 708569 . A G 759 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;QD=18.51;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:87:792,87,0 chrX 708614 . G A 905 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.62;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:99:938,99,0 chrX 708644 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.74;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1272,135,0 chrX 708696 . A G 1030 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.60;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1063,117,0 chrX 708844 . A G 3852.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.1498;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.85;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3852,435,0 chrX 708931 . A G 4238.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.54;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4238,471,0 chrX 708946 . T C 4233.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.6876;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.38;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4233,465,0 chrX 709147 . A G 5101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=237;Dels=0.00;FS=5.502;HaplotypeScore=14.4864;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.835;QD=21.52;ReadPosRankSum=2.970;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:3,234:237:99:5101,567,0 chrX 709369 . C T 4837.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=16.1728;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4837,505,0 chrX 709489 . A G 5047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-0.751;QD=22.23;ReadPosRankSum=1.655;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:5047,558,0 chrX 709498 . C G 4850.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=21.09;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4850,537,0 chrX 709747 . A C 1063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-6.308;DP=158;Dels=0.00;FS=3.830;HaplotypeScore=118.4496;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;MQRankSum=9.472;QD=6.73;ReadPosRankSum=-8.567;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:61,95:158:99:1096,120,0 chrX 709864 . C T 3504.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=25.76;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3504,364,0 chrX 710013 . A G 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.600;QD=22.22;ReadPosRankSum=1.710;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3510,390,0 chrX 710876 . G A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0428;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=23.45;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3354,354,0 chrX 711028 . A T 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=4.035;HaplotypeScore=19.0429;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-0.872;QD=24.35;ReadPosRankSum=1.710;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3872,411,0 chrX 711064 . G T 4184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=1.691;QD=24.61;ReadPosRankSum=0.571;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4184,433,0 chrX 711083 . A T 4206.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=21.46;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4206,436,0 chrX 711089 . T C 4125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=205;Dels=0.00;FS=2.932;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-1.180;QD=20.12;ReadPosRankSum=2.390;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4125,450,0 chrX 711174 . G T 4176.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.9869;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.31;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4176,439,0 chrX 711194 . C A 3587.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.38;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3587,378,0 chrX 711200 . T C 3679.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.33;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3679,414,0 chrX 711237 . G T 3125 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=18.94;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3158,342,0 chrX 711284 . G A 5211.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=21.2156;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=24.81;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5211,541,0 chrX 711399 . C T 4145.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=25.91;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:4145,433,0 chrX 711565 . C T 3502.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=22.74;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3502,366,0 chrX 711577 . A G 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-1.240;QD=21.85;ReadPosRankSum=1.710;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3408,366,0 chrX 711580 . C A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=22.15;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3389,354,0 chrX 711636 . T G 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=142;Dels=0.00;FS=3.332;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-1.361;QD=20.32;ReadPosRankSum=1.683;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:2919,318,0 chrX 711713 . A G 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=149;Dels=0.00;FS=5.851;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-0.791;QD=22.87;ReadPosRankSum=2.439;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3407,348,0 chrX 711724 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.05;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3076,327,0 chrX 711818 . A T 2184 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=23.48;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2217,237,0 chrX 711999 . T C 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.631;QD=24.12;ReadPosRankSum=1.700;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2638,285,0 chrX 712319 . T C 4515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-1.618;QD=24.67;ReadPosRankSum=1.694;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4515,486,0 chrX 712363 . T C 4130.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=21.97;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4130,453,0 chrX 712379 . G T 3883.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=21.57;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3883,403,0 chrX 712403 . G T 4212.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.7351;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.15;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4212,442,0 chrX 712580 . A G 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=274;Dels=0.00;FS=9.869;HaplotypeScore=18.1939;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;MQRankSum=-1.824;QD=16.73;ReadPosRankSum=2.930;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:3,271:274:99:4583,492,0 chrX 712640 . C G 4494.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=18.05;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:4494,489,0 chrX 712726 . G A 4705.01 filter AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=4.7225;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=6;QD=20.73;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:4705,493,0 chrX 712728 . C T 4587.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=6;MQRankSum=-0.229;QD=20.48;ReadPosRankSum=1.585;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:1,221:224:99:4587,464,0 chrX 712774 . T G 2204 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=213;Dels=0.00;FS=9.718;HaplotypeScore=10.1111;MLEAC=2;MLEAF=1.00;MQ=24.40;MQ0=11;MQRankSum=-0.446;QD=10.35;ReadPosRankSum=2.413;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:2,209:213:99:2237,243,0 chrX 712830 . A G 3125 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=235;Dels=0.00;FS=2.849;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=22.90;MQ0=4;MQRankSum=-2.364;QD=13.30;ReadPosRankSum=2.375;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:2,231:235:99:3158,342,0 chrX 712932 . T C 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.030;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.8308;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=3;MQRankSum=0.064;QD=19.53;ReadPosRankSum=2.379;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:4,172:176:99:3438,359,0 chrX 712948 . A G 2523 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.968;DP=170;Dels=0.00;FS=9.366;HaplotypeScore=2.7798;MLEAC=2;MLEAF=1.00;MQ=36.40;MQ0=10;MQRankSum=0.260;QD=14.84;ReadPosRankSum=2.222;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:4,165:170:99:2556,261,0 chrX 712951 . T A 2421 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=9;MQRankSum=1.257;QD=14.85;ReadPosRankSum=1.687;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:2454,267,0 chrX 712983 . C T 1679 filter AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=10;QD=10.18;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:1712,189,0 chrX 712995 . T C 1588 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=165;Dels=0.00;FS=6.039;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=31.42;MQ0=10;MQRankSum=-1.717;QD=9.62;ReadPosRankSum=2.928;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:3,160:165:99:1621,177,0 chrX 713263 . T C 6210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.283;DP=279;Dels=0.00;FS=31.351;HaplotypeScore=23.9182;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=5.297;QD=22.26;ReadPosRankSum=5.304;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:13,265:279:99:6210,563,0 chrX 713502 . A G 5392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=253;Dels=0.00;FS=2.923;HaplotypeScore=7.2317;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.836;QD=21.31;ReadPosRankSum=2.391;SB=-2.877e+03 GT:AD:DP:GQ:PL 1/1:2,249:252:99:5392,580,0 chrX 713510 . A G 5474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=252;Dels=0.00;FS=2.923;HaplotypeScore=11.7759;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.572;QD=21.72;ReadPosRankSum=2.342;SB=-2.840e+03 GT:AD:DP:GQ:PL 1/1:2,249:252:99:5474,594,0 chrX 713591 . G A 6033.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=13.7444;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.38;SB=-3.291e+03 GT:AD:DP:GQ:PL 1/1:0,256:258:99:6033,646,0 chrX 714056 . A G 7766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.704;DP=323;Dels=0.00;FS=16.309;HaplotypeScore=16.6923;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;MQRankSum=-1.854;QD=24.04;ReadPosRankSum=3.815;SB=-3.843e+03 GT:AD:DP:GQ:PL 1/1:5,317:323:99:7766,829,0 chrX 714175 . T G 430.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.569;DP=277;Dels=0.00;FS=203.851;HaplotypeScore=46.7452;MLEAC=1;MLEAF=0.500;MQ=43.51;MQ0=3;MQRankSum=-8.174;QD=1.55;ReadPosRankSum=-1.777;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:195,82:277:99:460,0,4082 chrX 714218 . A G 171.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.886;DP=270;Dels=0.00;FS=9.096;HaplotypeScore=14.2854;MLEAC=1;MLEAF=0.500;MQ=42.54;MQ0=5;MQRankSum=-7.152;QD=0.63;ReadPosRankSum=1.483;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:207,63:270:99:201,0,3196 chrX 714240 . A C 3031 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.7763;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=12;MQRankSum=-1.377;QD=13.90;ReadPosRankSum=1.715;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:1,215:218:99:3064,336,0 chrX 714242 . T C 222.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.789;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=11.0876;MLEAC=1;MLEAF=0.500;MQ=39.02;MQ0=12;MQRankSum=-5.294;QD=1.01;ReadPosRankSum=-0.446;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:170,46:220:99:252,0,2335 chrX 714265 . G A 989.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.856;DP=204;Dels=0.00;FS=2.745;HaplotypeScore=11.9735;MLEAC=1;MLEAF=0.500;MQ=35.40;MQ0=20;MQRankSum=-0.713;QD=4.85;ReadPosRankSum=-1.283;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,68:204:99:1019,0,1246 chrX 714280 . A G 734.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.270;DP=140;Dels=0.00;FS=3.468;HaplotypeScore=15.7483;MLEAC=1;MLEAF=0.500;MQ=30.44;MQ0=20;MQRankSum=-1.390;QD=5.24;ReadPosRankSum=-6.639;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,66:140:99:764,0,372 chrX 714290 . G A 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=1;MLEAF=0.500;MQ=21.70;MQ0=20;MQRankSum=-1.149;QD=0.28;ReadPosRankSum=-2.111;SB=-6.411e-03 GT:AD:DP:GQ:PL 0/1:10,44:54:43:45,0,43 chrX 714312 . A C 77.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.6823;MLEAC=2;MLEAF=1.00;MQ=11.38;MQ0=20;MQRankSum=1.531;QD=2.09;ReadPosRankSum=1.531;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,34:37:12:110,12,0 chrX 714337 . G A 52.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.030;DP=36;Dels=0.00;FS=19.445;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.59;MQ0=20;MQRankSum=1.573;QD=1.47;ReadPosRankSum=-2.007;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:24,12:36:9:85,9,0 chrX 714352 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.080;DP=43;Dels=0.00;FS=38.568;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=10.31;MQ0=11;MQRankSum=1.852;QD=0.51;ReadPosRankSum=-3.219;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:38,5:43:6:53,6,0 chrX 714434 . G A 103.13 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.73;MQ0=5;QD=1.12;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:5,87:92:18:136,18,0 chrX 714456 . A C 103.13 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.42;MQ0=6;QD=1.72;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,59:60:18:136,18,0 chrX 714506 . G A 652 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=17.18;MQ0=3;QD=7.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,83:88:78:685,78,0 chrX 714528 . A C 1566 filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=22.7885;MLEAC=2;MLEAF=1.00;MQ=19.43;MQ0=3;QD=10.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,140:147:99:1599,177,0 chrX 714578 . G A 3735.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.895;DP=269;Dels=0.00;FS=153.597;HaplotypeScore=25.5917;MLEAC=1;MLEAF=0.500;MQ=37.77;MQ0=1;MQRankSum=-2.102;QD=13.88;ReadPosRankSum=4.012;SB=-6.290e+02 GT:AD:DP:GQ:PL 0/1:26,238:269:75:3735,0,75 chrX 714602 . T C 158.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.854;DP=367;Dels=0.00;FS=203.884;HaplotypeScore=4.0229;MLEAC=1;MLEAF=0.500;MQ=40.84;MQ0=1;MQRankSum=1.312;QD=0.43;ReadPosRankSum=2.596;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:325,42:367:99:188,0,6006 chrX 714619 . C T 7125.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.01;FS=0.000;HaplotypeScore=15.2314;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=1;QD=21.86;SB=-3.167e+03 GT:AD:DP:GQ:PL 1/1:0,324:324:99:7125,736,0 chrX 714625 . G A 5157.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.056;DP=331;Dels=0.02;FS=100.909;HaplotypeScore=33.9219;MLEAC=1;MLEAF=0.500;MQ=43.38;MQ0=1;MQRankSum=0.579;QD=15.58;ReadPosRankSum=-3.676;SB=-1.842e+03 GT:AD:DP:GQ:PL 0/1:42,283:325:99:5157,0,205 chrX 714763 . T G 364.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.803;DP=355;Dels=0.00;FS=547.014;HaplotypeScore=24.2621;MLEAC=1;MLEAF=0.500;MQ=36.35;MQ0=0;MQRankSum=-6.039;QD=1.03;ReadPosRankSum=-7.109;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:250,103:355:99:394,0,4231 chrX 714798 . C G 6398.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=28.4861;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;QD=20.91;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,299:306:99:6398,702,0 chrX 714893 . G A 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.046;DP=179;Dels=0.00;FS=5.023;HaplotypeScore=26.3897;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=0;MQRankSum=0.794;QD=19.50;ReadPosRankSum=4.338;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:18,161:179:99:3490,260,0 chrX 714898 . G A 3331.01 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=46.9093;MLEAC=2;MLEAF=1.00;MQ=30.03;MQ0=0;QD=21.63;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,145:154:99:3331,357,0 chrX 714906 . A G 1766.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.872;DP=151;Dels=0.00;FS=6.498;HaplotypeScore=82.1846;MLEAC=1;MLEAF=0.500;MQ=29.19;MQ0=0;MQRankSum=0.026;QD=11.70;ReadPosRankSum=3.825;SB=-2.450e+02 GT:AD:DP:GQ:PL 0/1:49,102:151:99:1796,0,258 chrX 714907 . A C 1650.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-8.092;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=90.7171;MLEAC=1;MLEAF=0.500;MQ=28.60;MQ0=0;MQRankSum=-0.485;QD=11.62;ReadPosRankSum=5.172;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:39,95:142:99:1680,0,228 chrX 714910 . T A,G 2078.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.476;DP=137;Dels=0.00;FS=13.617;HaplotypeScore=61.1924;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.93;MQ0=0;MQRankSum=-1.866;QD=15.17;ReadPosRankSum=-1.502;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:10,91,36:137:99:2138,268,174,1757,0,1838 chrX 714919 . T G 665.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.893;DP=91;Dels=0.00;FS=8.772;HaplotypeScore=327.5903;MLEAC=1;MLEAF=0.500;MQ=28.90;MQ0=0;MQRankSum=0.374;QD=7.31;ReadPosRankSum=6.382;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,41:91:99:695,0,308 chrX 714920 . G C 706.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;DP=91;Dels=0.00;FS=9.168;HaplotypeScore=327.5903;MLEAC=1;MLEAF=0.500;MQ=28.90;MQ0=0;MQRankSum=0.179;QD=7.76;ReadPosRankSum=4.592;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,59:91:99:736,0,364 chrX 714924 . G A 110.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.811;DP=91;Dels=0.00;FS=7.202;HaplotypeScore=270.0761;MLEAC=1;MLEAF=0.500;MQ=28.90;MQ0=0;MQRankSum=1.643;QD=1.21;ReadPosRankSum=7.336;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,51:91:99:140,0,367 chrX 714925 . A C 264.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.005;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=270.0761;MLEAC=1;MLEAF=0.500;MQ=28.53;MQ0=0;MQRankSum=0.547;QD=1.83;ReadPosRankSum=0.130;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,22:144:99:294,0,262 chrX 714927 . C G,T 786.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.221;DP=144;Dels=0.00;FS=30.704;HaplotypeScore=137.9458;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.53;MQ0=0;MQRankSum=0.504;QD=5.46;ReadPosRankSum=-1.494;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:2,95,47:144:99:846,350,329,460,0,451 chrX 714928 . G A 226.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.922;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=281.0345;MLEAC=1;MLEAF=0.500;MQ=28.48;MQ0=0;MQRankSum=1.087;QD=1.52;ReadPosRankSum=4.623;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:111,38:149:99:256,0,740 chrX 714934 . G A 282.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.456;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=224.2611;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=0;MQRankSum=1.106;QD=1.75;ReadPosRankSum=6.538;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,47:161:99:312,0,917 chrX 714937 . T G 158.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.295;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=200.3937;MLEAC=1;MLEAF=0.500;MQ=28.24;MQ0=0;MQRankSum=1.808;QD=0.96;ReadPosRankSum=4.616;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:125,39:164:99:188,0,1047 chrX 714938 . G C 156.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=189.4809;MLEAC=1;MLEAF=0.500;MQ=28.24;MQ0=0;MQRankSum=2.265;QD=0.95;ReadPosRankSum=3.795;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,22:164:99:186,0,984 chrX 714942 . A G 501.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.813;DP=149;Dels=0.00;FS=9.543;HaplotypeScore=181.4641;MLEAC=1;MLEAF=0.500;MQ=28.16;MQ0=0;MQRankSum=0.822;QD=3.36;ReadPosRankSum=-5.092;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,99:149:99:531,0,398 chrX 714943 . A C 502.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.511;DP=148;Dels=0.00;FS=12.347;HaplotypeScore=180.6755;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=0;MQRankSum=2.370;QD=3.39;ReadPosRankSum=-4.899;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,99:148:99:532,0,379 chrX 714944 . G C 138.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=180.6755;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=0;MQRankSum=1.425;QD=0.86;ReadPosRankSum=5.076;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,22:160:99:168,0,782 chrX 714946 . T A 888.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.319;DP=160;Dels=0.00;FS=15.592;HaplotypeScore=165.7322;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;MQRankSum=-0.943;QD=5.55;ReadPosRankSum=2.123;SB=-1.167e-02 GT:AD:DP:GQ:PL 1/1:27,133:160:3:918,3,0 chrX 714947 . G C 97.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.325;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=148.8458;MLEAC=1;MLEAF=0.500;MQ=28.16;MQ0=0;MQRankSum=1.459;QD=0.60;ReadPosRankSum=5.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,22:161:99:127,0,785 chrX 714949 . A T 94.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=157.6004;MLEAC=1;MLEAF=0.500;MQ=28.17;MQ0=0;MQRankSum=0.433;QD=0.58;ReadPosRankSum=5.757;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:140,22:162:99:124,0,837 chrX 714951 . G A 1016 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.530;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=157.6158;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;MQRankSum=-2.527;QD=6.27;ReadPosRankSum=4.075;SB=-5.200e+01 GT:AD:DP:GQ:PL 1/1:25,137:162:52:1049,52,0 chrX 714954 . T G 82.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.444;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=113.9024;MLEAC=1;MLEAF=0.500;MQ=28.21;MQ0=0;MQRankSum=1.720;QD=0.48;ReadPosRankSum=6.650;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:148,22:170:99:112,0,880 chrX 714955 . G A 784.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.887;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=113.9024;MLEAC=1;MLEAF=0.500;MQ=28.21;MQ0=0;MQRankSum=0.665;QD=4.61;ReadPosRankSum=-5.030;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,138:170:99:814,0,315 chrX 714958 . A T 746.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.622;DP=170;Dels=0.00;FS=10.869;HaplotypeScore=90.6383;MLEAC=1;MLEAF=0.500;MQ=28.21;MQ0=0;MQRankSum=-2.099;QD=4.39;ReadPosRankSum=0.344;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,121:170:99:776,0,380 chrX 714961 . A G 201.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.374;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=82.0287;MLEAC=1;MLEAF=0.500;MQ=28.18;MQ0=0;MQRankSum=-0.932;QD=1.22;ReadPosRankSum=4.796;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:143,22:165:99:231,0,888 chrX 714964 . T A 736.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;DP=155;Dels=0.00;FS=13.813;HaplotypeScore=44.5023;MLEAC=1;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=-1.320;QD=4.75;ReadPosRankSum=1.244;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,123:155:99:766,0,376 chrX 714967 . A C 675.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.324;DP=151;Dels=0.00;FS=13.051;HaplotypeScore=28.6407;MLEAC=1;MLEAF=0.500;MQ=28.10;MQ0=0;MQRankSum=0.635;QD=4.47;ReadPosRankSum=3.851;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,117:151:99:705,0,373 chrX 714969 . G A 864.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.111;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=24.0204;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=0;MQRankSum=-1.626;QD=5.88;ReadPosRankSum=1.268;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,125:147:99:894,0,224 chrX 714970 . A C 178.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.834;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=24.8525;MLEAC=1;MLEAF=0.500;MQ=28.16;MQ0=0;MQRankSum=1.012;QD=1.19;ReadPosRankSum=-1.150;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,22:150:99:208,0,877 chrX 714973 . A G 724.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.005;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=15.1196;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=0;MQRankSum=0.805;QD=4.89;ReadPosRankSum=3.968;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,120:148:99:754,0,334 chrX 714976 . C A 297.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.903;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.1492;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=0;MQRankSum=2.069;QD=2.02;ReadPosRankSum=-4.600;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,27:147:99:327,0,766 chrX 714977 . G A 762.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.715;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.1492;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=0;MQRankSum=-0.243;QD=5.18;ReadPosRankSum=4.565;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,120:147:99:792,0,290 chrX 714979 . T A,G 1132.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.13;MQ0=0;QD=7.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:0,22,123:145:99:1192,834,792,358,0,256 chrX 714982 . G A 222.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.992;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=28.12;MQ0=0;MQRankSum=0.629;QD=1.56;ReadPosRankSum=-4.062;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,22:142:99:252,0,759 chrX 714983 . C G 219.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.472;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=28.12;MQ0=0;MQRankSum=2.128;QD=1.54;ReadPosRankSum=-4.045;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,22:142:99:249,0,723 chrX 714991 . A G 658.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=28.05;MQ0=0;MQRankSum=0.479;QD=4.95;ReadPosRankSum=5.655;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,110:133:99:688,0,254 chrX 714994 . A C 93.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.544;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.98;MQ0=0;MQRankSum=0.359;QD=0.75;ReadPosRankSum=-3.541;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,14:124:99:123,0,616 chrX 714996 . G A 81.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.411;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.91;MQ0=0;MQRankSum=1.013;QD=0.70;ReadPosRankSum=-4.140;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,14:116:99:111,0,582 chrX 715000 . A G 63.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.651;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=1;MLEAF=0.500;MQ=27.84;MQ0=0;MQRankSum=0.782;QD=0.58;ReadPosRankSum=-3.606;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:99,10:109:93:93,0,585 chrX 715006 . T A 643 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.9800;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=10.72;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:75:676,75,0 chrX 715007 . T G 626 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=14.843;HaplotypeScore=3.7139;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;MQRankSum=-0.628;QD=10.26;ReadPosRankSum=2.329;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:2,59:61:75:659,75,0 chrX 715012 . G A 666 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.05;FS=0.000;HaplotypeScore=26.0957;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=10.74;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:78:699,78,0 chrX 715025 . G A 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.661;DP=42;Dels=0.00;FS=16.036;HaplotypeScore=16.8168;MLEAC=1;MLEAF=0.500;MQ=28.77;MQ0=0;MQRankSum=0.293;QD=0.71;ReadPosRankSum=-2.149;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,3:42:60:60,0,106 chrX 715027 . G T 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;DP=43;Dels=0.00;FS=88.033;HaplotypeScore=32.9223;MLEAC=1;MLEAF=0.500;MQ=28.55;MQ0=0;MQRankSum=1.849;QD=0.67;ReadPosRankSum=4.004;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:10,29:43:59:59,0,131 chrX 715030 . G A 249 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=35.2863;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=5.19;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:30:282,30,0 chrX 715033 . G A 302 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;DP=59;Dels=0.00;FS=11.676;HaplotypeScore=39.6004;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;MQRankSum=1.101;QD=5.12;ReadPosRankSum=-1.523;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:4,55:59:36:335,36,0 chrX 715036 . T A 132.80 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.713;DP=106;Dels=0.00;FS=142.050;HaplotypeScore=51.3535;MLEAC=1;MLEAF=0.500;MQ=28.73;MQ0=0;MQRankSum=0.908;QD=1.25;ReadPosRankSum=0.757;SB=22.20 GT:AD:DP:GQ:PL 0/1:81,15:106:51:162,0,51 chrX 715037 . G A 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.888;DP=120;Dels=0.00;FS=21.090;HaplotypeScore=63.2055;MLEAC=1;MLEAF=0.500;MQ=28.60;MQ0=0;MQRankSum=0.802;QD=0.12;ReadPosRankSum=1.371;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,3:120:44:44,0,268 chrX 715040 . G A 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.004;DP=143;Dels=0.00;FS=96.938;HaplotypeScore=131.9060;MLEAC=1;MLEAF=0.500;MQ=28.60;MQ0=0;MQRankSum=0.109;QD=0.22;ReadPosRankSum=1.492;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,15:143:61:61,0,596 chrX 715042 . A G 100.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.344;DP=154;Dels=0.00;FS=22.178;HaplotypeScore=158.6320;MLEAC=1;MLEAF=0.500;MQ=28.63;MQ0=0;MQRankSum=1.086;QD=0.65;ReadPosRankSum=-1.625;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:119,32:154:99:130,0,843 chrX 715046 . G T 74.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.194;DP=166;Dels=0.00;FS=120.468;HaplotypeScore=240.1053;MLEAC=1;MLEAF=0.500;MQ=28.48;MQ0=0;MQRankSum=-0.290;QD=0.45;ReadPosRankSum=0.384;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:146,20:166:99:104,0,1156 chrX 715050 . G A 565.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.755;DP=168;Dels=0.00;FS=43.824;HaplotypeScore=247.9435;MLEAC=1;MLEAF=0.500;MQ=28.49;MQ0=0;MQRankSum=1.016;QD=3.36;ReadPosRankSum=-1.641;SB=-1.820e+02 GT:AD:DP:GQ:PL 0/1:85,82:168:99:595,0,732 chrX 715051 . A C 332.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.332;DP=187;Dels=0.00;FS=206.784;HaplotypeScore=268.6558;MLEAC=1;MLEAF=0.500;MQ=28.38;MQ0=0;MQRankSum=-0.580;QD=1.78;ReadPosRankSum=-0.494;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:149,37:187:99:362,0,1028 chrX 715053 . T C 99.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.961;DP=190;Dels=0.00;FS=107.124;HaplotypeScore=311.6016;MLEAC=1;MLEAF=0.500;MQ=28.39;MQ0=0;MQRankSum=1.374;QD=0.52;ReadPosRankSum=4.759;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,48:190:99:129,0,1255 chrX 715054 . G T 406.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.934;DP=191;Dels=0.00;FS=112.528;HaplotypeScore=356.0195;MLEAC=1;MLEAF=0.500;MQ=28.40;MQ0=0;MQRankSum=1.023;QD=2.13;ReadPosRankSum=-0.982;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,71:191:99:436,0,552 chrX 715060 . A G 90.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.350;DP=204;Dels=0.01;FS=96.932;HaplotypeScore=454.4298;MLEAC=1;MLEAF=0.500;MQ=28.43;MQ0=0;MQRankSum=0.821;QD=0.44;ReadPosRankSum=5.287;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:151,49:202:99:120,0,1287 chrX 715063 . T G 566.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.183;DP=218;Dels=0.01;FS=271.422;HaplotypeScore=529.6653;MLEAC=1;MLEAF=0.500;MQ=28.47;MQ0=0;MQRankSum=-0.916;QD=2.60;ReadPosRankSum=0.042;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:145,59:216:99:596,0,842 chrX 715064 . G C 320.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;DP=218;Dels=0.03;FS=202.434;HaplotypeScore=525.8469;MLEAC=1;MLEAF=0.500;MQ=28.47;MQ0=0;MQRankSum=0.829;QD=1.47;ReadPosRankSum=0.740;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:175,37:212:99:350,0,1156 chrX 715066 . A C 115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.631;DP=220;Dels=0.03;FS=163.761;HaplotypeScore=490.2687;MLEAC=1;MLEAF=0.500;MQ=28.48;MQ0=0;MQRankSum=1.597;QD=0.52;ReadPosRankSum=-0.852;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:182,31:213:99:145,0,1234 chrX 715070 . G C 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;DP=248;Dels=0.02;FS=68.048;HaplotypeScore=568.2604;MLEAC=1;MLEAF=0.500;MQ=28.50;MQ0=0;MQRankSum=-0.930;QD=0.25;ReadPosRankSum=0.559;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:227,17:244:92:92,0,1540 chrX 715072 . G T 1174.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.332;DP=248;Dels=0.02;FS=158.138;HaplotypeScore=582.3393;MLEAC=1;MLEAF=0.500;MQ=28.50;MQ0=0;MQRankSum=1.415;QD=4.73;ReadPosRankSum=4.907;SB=-3.630e+02 GT:AD:DP:GQ:PL 0/1:75,143:244:99:1204,0,245 chrX 715073 . G C 290.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.707;DP=254;Dels=0.00;FS=297.804;HaplotypeScore=574.4802;MLEAC=1;MLEAF=0.500;MQ=28.51;MQ0=0;MQRankSum=-0.285;QD=1.14;ReadPosRankSum=-4.746;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:194,60:254:99:320,0,1476 chrX 715075 . A T 289.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.174;DP=259;Dels=0.00;FS=287.082;HaplotypeScore=475.7676;MLEAC=1;MLEAF=0.500;MQ=28.52;MQ0=0;MQRankSum=1.452;QD=1.12;ReadPosRankSum=-4.708;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:199,57:259:99:319,0,1418 chrX 715080 . T G 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.538;DP=263;Dels=0.00;FS=69.187;HaplotypeScore=524.0859;MLEAC=1;MLEAF=0.500;MQ=28.49;MQ0=0;MQRankSum=0.539;QD=0.06;ReadPosRankSum=2.059;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:246,17:263:45:45,0,1865 chrX 715081 . T G 892.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.909;DP=264;Dels=0.00;FS=56.121;HaplotypeScore=515.0323;MLEAC=1;MLEAF=0.500;MQ=28.67;MQ0=0;MQRankSum=0.092;QD=3.38;ReadPosRankSum=-5.960;SB=-1.085e+03 GT:AD:DP:GQ:PL 0/1:122,122:264:99:922,0,776 chrX 715086 . A G 278.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;DP=267;Dels=0.00;FS=352.447;HaplotypeScore=374.8185;MLEAC=1;MLEAF=0.500;MQ=28.68;MQ0=0;MQRankSum=1.089;QD=1.04;ReadPosRankSum=-2.799;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:197,70:267:99:308,0,1627 chrX 715087 . A G 744.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.425;DP=267;Dels=0.00;FS=17.382;HaplotypeScore=374.8185;MLEAC=1;MLEAF=0.500;MQ=28.68;MQ0=0;MQRankSum=0.031;QD=2.79;ReadPosRankSum=0.507;SB=-4.230e+02 GT:AD:DP:GQ:PL 0/1:177,90:267:99:774,0,1133 chrX 715090 . T A 112.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.070;DP=270;Dels=0.00;FS=325.336;HaplotypeScore=539.7752;MLEAC=1;MLEAF=0.500;MQ=28.68;MQ0=0;MQRankSum=0.193;QD=0.41;ReadPosRankSum=-2.311;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:191,56:270:99:142,0,1520 chrX 715093 . A C 18.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.022;DP=273;Dels=0.00;FS=263.471;HaplotypeScore=401.6628;MLEAC=1;MLEAF=0.500;MQ=28.65;MQ0=0;MQRankSum=0.516;QD=0.07;ReadPosRankSum=-0.503;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:217,56:273:48:48,0,1841 chrX 715095 . G A 959.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=9.001;DP=273;Dels=0.00;FS=27.811;HaplotypeScore=450.2630;MLEAC=1;MLEAF=0.500;MQ=28.65;MQ0=0;MQRankSum=0.537;QD=3.51;ReadPosRankSum=-1.362;SB=-1.852e+03 GT:AD:DP:GQ:PL 0/1:110,163:273:99:989,0,980 chrX 715096 . A C 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.297;DP=278;Dels=0.00;FS=116.338;HaplotypeScore=439.3541;MLEAC=1;MLEAF=0.500;MQ=28.66;MQ0=0;MQRankSum=-0.066;QD=0.10;ReadPosRankSum=-1.636;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:250,28:278:57:57,0,1977 chrX 715099 . G T 323.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.316;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=442.6513;MLEAC=1;MLEAF=0.500;MQ=28.66;MQ0=0;MQRankSum=0.571;QD=1.15;ReadPosRankSum=-1.969;SB=-3.190e+02 GT:AD:DP:GQ:PL 0/1:200,63:280:99:353,0,1403 chrX 715105 . A G 184.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.372;DP=273;Dels=0.00;FS=51.242;HaplotypeScore=448.8973;MLEAC=1;MLEAF=0.500;MQ=28.65;MQ0=0;MQRankSum=1.624;QD=0.67;ReadPosRankSum=-1.796;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:218,55:273:99:214,0,1752 chrX 715108 . A T 261.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.184;DP=264;Dels=0.00;FS=143.395;HaplotypeScore=407.2520;MLEAC=1;MLEAF=0.500;MQ=28.67;MQ0=0;MQRankSum=0.911;QD=0.99;ReadPosRankSum=-7.542;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:170,68:264:99:291,0,1435 chrX 715111 . A T 75.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.577;DP=261;Dels=0.00;FS=99.860;HaplotypeScore=331.6517;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=0;MQRankSum=0.757;QD=0.29;ReadPosRankSum=0.342;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:235,23:261:99:105,0,1718 chrX 715114 . G A 1476.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.796;DP=237;Dels=0.00;FS=241.532;HaplotypeScore=333.9295;MLEAC=1;MLEAF=0.500;MQ=28.72;MQ0=0;MQRankSum=0.925;QD=6.23;ReadPosRankSum=-2.967;SB=-3.862e+02 GT:AD:DP:GQ:PL 0/1:89,147:236:99:1506,0,366 chrX 715117 . T G 134.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.267;DP=235;Dels=0.00;FS=10.290;HaplotypeScore=304.5206;MLEAC=1;MLEAF=0.500;MQ=28.76;MQ0=0;MQRankSum=2.245;QD=0.57;ReadPosRankSum=-3.375;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:186,37:234:99:164,0,1506 chrX 715122 . G A 278.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.351;DP=216;Dels=0.00;FS=13.290;HaplotypeScore=208.7086;MLEAC=1;MLEAF=0.500;MQ=28.82;MQ0=0;MQRankSum=0.974;QD=1.29;ReadPosRankSum=-6.223;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:176,39:215:99:308,0,1421 chrX 715126 . A G 94.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.043;DP=187;Dels=0.01;FS=191.517;HaplotypeScore=140.7381;MLEAC=1;MLEAF=0.500;MQ=28.80;MQ0=0;MQRankSum=0.643;QD=0.50;ReadPosRankSum=2.175;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,59:186:99:124,0,1220 chrX 715129 . C A 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.139;DP=165;Dels=0.01;FS=146.689;HaplotypeScore=82.7963;MLEAC=1;MLEAF=0.500;MQ=28.83;MQ0=0;MQRankSum=-0.203;QD=0.16;ReadPosRankSum=1.895;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,56:164:57:57,0,1097 chrX 715132 . T A 126.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.532;DP=156;Dels=0.01;FS=242.776;HaplotypeScore=76.8945;MLEAC=1;MLEAF=0.500;MQ=28.88;MQ0=0;MQRankSum=-1.713;QD=0.81;ReadPosRankSum=0.986;SB=-5.833e-03 GT:AD:DP:GQ:PL 0/1:93,60:155:99:156,0,961 chrX 715158 . A G 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;DP=81;Dels=0.00;FS=115.695;HaplotypeScore=252.5053;MLEAC=1;MLEAF=0.500;MQ=28.76;MQ0=0;MQRankSum=0.261;QD=0.14;ReadPosRankSum=-3.044;SB=-6.476e-03 GT:AD:DP:GQ:PL 0/1:64,17:81:41:41,0,236 chrX 715159 . A G 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.299;DP=74;Dels=0.00;FS=3.657;HaplotypeScore=213.6954;MLEAC=1;MLEAF=0.500;MQ=28.74;MQ0=0;MQRankSum=-0.695;QD=0.61;ReadPosRankSum=-3.341;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,9:74:75:75,0,147 chrX 715162 . A T 50.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=109.1517;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=0;MQRankSum=0.428;QD=0.75;ReadPosRankSum=-3.366;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:7,8:67:54:80,0,54 chrX 715192 . A G 210.52 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;DP=49;Dels=0.00;FS=8.236;HaplotypeScore=26.3436;MLEAC=1;MLEAF=0.500;MQ=28.51;MQ0=1;MQRankSum=-1.702;QD=4.30;ReadPosRankSum=1.631;SB=-2.252e+01 GT:AD:DP:GQ:PL 0/1:13,36:49:6:240,0,6 chrX 715195 . A G 240.18 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;DP=45;Dels=0.00;FS=4.762;HaplotypeScore=23.4571;MLEAC=1;MLEAF=0.500;MQ=28.68;MQ0=1;MQRankSum=-0.654;QD=5.34;ReadPosRankSum=-0.502;SB=-2.018e+01 GT:AD:DP:GQ:PL 0/1:8,37:45:11:270,0,11 chrX 715246 . A G 213.14 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;DP=55;Dels=0.00;FS=13.043;HaplotypeScore=35.5433;MLEAC=1;MLEAF=0.500;MQ=32.81;MQ0=1;MQRankSum=-1.249;QD=3.88;ReadPosRankSum=4.355;SB=-2.991e+02 GT:AD:DP:GQ:PL 0/1:13,40:55:12:243,0,12 chrX 715249 . A G 401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.583;DP=61;Dels=0.00;FS=5.032;HaplotypeScore=22.9473;MLEAC=2;MLEAF=1.00;MQ=33.82;MQ0=1;MQRankSum=-0.829;QD=6.57;ReadPosRankSum=3.121;SB=-4.679e+02 GT:AD:DP:GQ:PL 1/1:5,55:61:48:434,48,0 chrX 715404 . A C 99.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.113;DP=198;Dels=0.00;FS=9.084;HaplotypeScore=13.4883;MLEAC=1;MLEAF=0.500;MQ=40.88;MQ0=0;MQRankSum=-2.092;QD=0.50;ReadPosRankSum=5.916;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:174,24:198:99:129,0,3507 chrX 715408 . C T 170.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.716;DP=188;Dels=0.00;FS=8.873;HaplotypeScore=15.0657;MLEAC=1;MLEAF=0.500;MQ=41.60;MQ0=0;MQRankSum=-2.092;QD=0.90;ReadPosRankSum=5.806;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:161,25:188:99:200,0,3224 chrX 715412 . G T 142.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.413;DP=192;Dels=0.00;FS=8.807;HaplotypeScore=13.2981;MLEAC=1;MLEAF=0.500;MQ=42.06;MQ0=0;MQRankSum=-1.560;QD=0.74;ReadPosRankSum=5.355;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:164,25:192:99:172,0,3314 chrX 715413 . A C 112.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.609;DP=189;Dels=0.00;FS=7.254;HaplotypeScore=11.7755;MLEAC=1;MLEAF=0.500;MQ=42.24;MQ0=0;MQRankSum=-0.898;QD=0.59;ReadPosRankSum=5.681;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:165,24:189:99:142,0,3536 chrX 715414 . A G 96.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.962;DP=190;Dels=0.00;FS=7.254;HaplotypeScore=14.0868;MLEAC=1;MLEAF=0.500;MQ=42.52;MQ0=0;MQRankSum=-1.970;QD=0.51;ReadPosRankSum=5.537;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:164,24:190:99:126,0,3463 chrX 715417 . G A 143.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.514;DP=186;Dels=0.00;FS=4.101;HaplotypeScore=14.0868;MLEAC=1;MLEAF=0.500;MQ=42.77;MQ0=0;MQRankSum=-2.240;QD=0.77;ReadPosRankSum=4.664;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:161,25:186:99:173,0,3264 chrX 715501 . A G 4520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=3.350;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=0.857;QD=24.17;ReadPosRankSum=1.695;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4520,486,0 chrX 715567 . G C 3181 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.6342;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=20.39;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3214,351,0 chrX 715574 . C T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=21.08;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3310,351,0 chrX 715585 . G A 2890 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;QD=18.29;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2923,309,0 chrX 715592 . A T 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=159;Dels=0.00;FS=6.794;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;MQRankSum=1.074;QD=18.19;ReadPosRankSum=2.403;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:2926,312,0 chrX 715911 . C T 4058.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.30;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4058,424,0 chrX 716361 . A T 3961.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=25.72;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3961,415,0 chrX 716386 . G A 3360.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.11;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3360,357,0 chrX 716476 . G A 3014 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.0975;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=18.60;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3047,315,0 chrX 716566 . C G 2825 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=13.4743;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.42;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2858,309,0 chrX 716647 . C T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.67;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3330,354,0 chrX 716692 . G A 3078 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.68;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3111,330,0 chrX 716901 . C T 4701.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.2315;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.36;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4701,490,0 chrX 717041 . G T 3353.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6694;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.32;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3353,351,0 chrX 717158 . G C 3938.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.7987;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=22.25;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3938,426,0 chrX 717188 . C A 3115 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.4764;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=19.72;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3148,327,0 chrX 717193 . C A 2790 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.2195;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=18.36;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2823,303,0 chrX 717333 . G A 2192 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=0;QD=16.73;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2225,240,0 chrX 717336 . T A 2101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;MQRankSum=-0.505;QD=16.54;ReadPosRankSum=1.705;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2134,225,0 chrX 717347 . A G 1764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.789;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;MQRankSum=-0.724;QD=13.16;ReadPosRankSum=1.680;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:1797,198,0 chrX 717355 . G T 1693 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.56;MQ0=0;QD=13.33;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1726,183,0 chrX 717364 . G A 1657 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=12.46;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:1690,183,0 chrX 717437 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.4433;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=23.01;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2955,309,0 chrX 717517 . A G 4025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=181;Dels=0.00;FS=3.362;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-0.789;QD=22.24;ReadPosRankSum=1.713;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4025,438,0 chrX 717538 . C G 3984.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=22.13;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3984,441,0 chrX 717626 . G A 4100.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.12;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4100,427,0 chrX 717742 . A G 4902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.315;DP=205;Dels=0.00;FS=12.877;HaplotypeScore=14.2647;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.364;QD=23.91;ReadPosRankSum=3.400;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:4,200:205:99:4902,531,0 chrX 718056 . C T 5215.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.81;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5215,547,0 chrX 718291 . G T 3888.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.6105;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.92;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3888,414,0 chrX 718433 . G A 4007.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.02;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:4007,429,0 chrX 718523 . A G 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=197;Dels=0.01;FS=2.942;HaplotypeScore=12.4642;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.728;QD=19.83;ReadPosRankSum=2.424;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:2,192:196:99:3906,426,0 chrX 718630 . G A 4463.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;QD=23.12;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4463,492,0 chrX 718719 . G A 4169.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.6001;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=24.24;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4169,439,0 chrX 719114 . C T 4610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.8214;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.697;QD=23.17;ReadPosRankSum=-0.665;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4610,489,0 chrX 719441 . C T 4742.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=2.4038;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=20.53;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:0,226:231:99:4742,502,0 chrX 719442 . A T 4907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-0.751;QD=21.71;ReadPosRankSum=1.671;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4907,511,0 chrX 719842 . G A 4441.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.88;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4441,463,0 chrX 720040 . T C 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.132;QD=23.87;ReadPosRankSum=1.663;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,149:153:99:3652,405,0 chrX 720598 . G A 3983.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.85;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3983,415,0 chrX 720758 . T C 3999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=177;Dels=0.00;FS=3.026;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.830;QD=22.59;ReadPosRankSum=2.394;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3999,432,0 chrX 720763 . A T 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=172;Dels=0.00;FS=3.324;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.081;QD=22.94;ReadPosRankSum=1.712;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3945,423,0 chrX 721046 . G A 4830.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.39;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4830,514,0 chrX 721180 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.22;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2940,306,0 chrX 721207 . T A 2426 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.46;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2459,255,0 chrX 721243 . A G 2755 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2788,303,0 chrX 721347 . A T 2220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.458;DP=101;Dels=0.00;FS=3.709;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=0.463;QD=21.98;ReadPosRankSum=1.664;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2253,240,0 chrX 721361 . A T 2067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=100;Dels=0.00;FS=4.905;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;MQRankSum=0.157;QD=20.67;ReadPosRankSum=1.662;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2100,237,0 chrX 721387 . A G 2060 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=21.91;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2093,246,0 chrX 721412 . T C 1936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=0;MQRankSum=-0.447;QD=20.82;ReadPosRankSum=2.396;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:2,89:93:99:1969,219,0 chrX 721420 . T C 1857 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=0;QD=19.76;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1890,219,0 chrX 721486 . T C 2103 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.68;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2136,237,0 chrX 721520 . A G 2023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-0.173;QD=20.23;ReadPosRankSum=1.697;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2056,228,0 chrX 721603 . A T 1989 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=39.87;MQ0=0;QD=17.76;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2022,222,0 chrX 721617 . G A 2068 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.47;MQ0=0;QD=17.38;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2101,234,0 chrX 721621 . C T 2061 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=0;QD=17.92;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2094,228,0 chrX 721626 . G A 1869 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;QD=16.39;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1902,219,0 chrX 721634 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=37.14;MQ0=0;QD=17.54;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2138,237,0 chrX 721671 . G T 1942 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=119.6545;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=14.60;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1975,222,0 chrX 721838 . T C 2687 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=23.37;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2720,294,0 chrX 721886 . G A 3793.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=23.71;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3793,397,0 chrX 722092 . G A 3753.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3358;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3753,396,0 chrX 722183 . C T 3200 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.0347;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.62;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3233,334,0 chrX 722324 . A G 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=12.7924;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.047;QD=22.62;ReadPosRankSum=2.393;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2974,321,0 chrX 722361 . T C 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.698;DP=110;Dels=0.00;FS=15.571;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.817;QD=20.23;ReadPosRankSum=2.936;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:3,107:110:99:2258,249,0 chrX 722460 . T C 3126 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.05;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3159,342,0 chrX 722676 . A C 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=3.064;HaplotypeScore=11.5082;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.084;QD=22.11;ReadPosRankSum=1.669;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3670,399,0 chrX 722983 . C T 5552.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=21.9992;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.46;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5552,589,0 chrX 723109 . G A 4968.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.18;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4968,534,0 chrX 723534 . C T 3736.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.6821;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.35;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3736,394,0 chrX 723574 . T C 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=153;Dels=0.00;FS=3.343;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.570;QD=21.94;ReadPosRankSum=1.662;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,148:153:99:3357,372,0 chrX 723691 . A G 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=3.662;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-1.081;QD=23.58;ReadPosRankSum=1.711;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3914,423,0 chrX 723717 . T C 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-0.563;QD=22.90;ReadPosRankSum=1.711;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3756,411,0 chrX 723909 . T A 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=5.149;HaplotypeScore=4.9783;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-1.708;QD=20.45;ReadPosRankSum=1.660;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2998,318,0 chrX 723930 . C T 2902 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.88;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2935,318,0 chrX 723948 . C T 2798 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.02;FS=0.000;HaplotypeScore=4.6740;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.36;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2831,294,0 chrX 724020 . T G 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-1.704;QD=22.60;ReadPosRankSum=1.647;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2835,303,0 chrX 724246 . T C 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.457;QD=21.08;ReadPosRankSum=1.684;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3111,333,0 chrX 724313 . T A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=24.21;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4067,424,0 chrX 724337 . C T 3872.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.13;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3872,417,0 chrX 724397 . G A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=22.22;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3378,351,0 chrX 724519 . C T 3496.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=23.15;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3496,364,0 chrX 724641 . G A 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=118;Dels=0.00;FS=6.099;HaplotypeScore=2.6155;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;MQRankSum=-2.120;QD=20.89;ReadPosRankSum=2.804;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2498,267,0 chrX 724642 . A G 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=118;Dels=0.00;FS=6.086;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;MQRankSum=-1.440;QD=20.32;ReadPosRankSum=2.906;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:3,114:118:99:2431,267,0 chrX 724657 . T C 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;MQRankSum=-0.379;QD=19.58;ReadPosRankSum=1.651;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2539,276,0 chrX 724710 . A G 2269 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=19.90;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2302,255,0 chrX 724711 . G C 2240 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=19.15;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,113:117:99:2273,255,0 chrX 724761 . A G 2574 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=21.45;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2607,285,0 chrX 724819 . C T 2442 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=99.5503;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=21.23;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2475,261,0 chrX 724820 . G A 2366 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=99.5503;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=20.94;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2399,255,0 chrX 724901 . C T 3028 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=23.11;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3061,318,0 chrX 724987 . A C 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.668;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=1.016;QD=23.31;ReadPosRankSum=1.589;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2854,309,0 chrX 724999 . T G 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.301;QD=22.12;ReadPosRankSum=1.703;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2710,297,0 chrX 725020 . A G 2719 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.92;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2752,297,0 chrX 725123 . A G 3298.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.77;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3298,357,0 chrX 725175 . C T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=26.14;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3791,397,0 chrX 725433 . C G 3128 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.88;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,125:131:99:3161,345,0 chrX 725475 . A T 3195 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=24.02;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3228,348,0 chrX 725514 . C T 3368.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=24.76;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3368,352,0 chrX 725705 . C T 4566.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=23.42;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4566,484,0 chrX 725736 . C T 2764 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=16.07;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2797,291,0 chrX 725767 . A G 1948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=154;Dels=0.00;FS=4.393;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;MQRankSum=-0.562;QD=12.65;ReadPosRankSum=1.710;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:1981,219,0 chrX 725776 . T C 1894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;MQRankSum=-1.347;QD=12.38;ReadPosRankSum=1.709;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:1927,210,0 chrX 725801 . C T 1764 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=12.60;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1797,195,0 chrX 725808 . A T 2036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.0958;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;MQRankSum=-1.221;QD=13.66;ReadPosRankSum=1.709;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2069,216,0 chrX 726047 . A G 3588.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5060;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=23.61;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3588,402,0 chrX 726114 . G A 5125.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.37;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:5125,532,0 chrX 726314 . C T 5302.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=15.2760;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.66;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5302,553,0 chrX 726401 . C T 4623.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=17.4741;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.33;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:4623,484,0 chrX 726809 . T C 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=166;Dels=0.00;FS=2.990;HaplotypeScore=10.6039;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-0.841;QD=24.63;ReadPosRankSum=2.345;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:4088,447,0 chrX 726859 . G A 4392.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=25.39;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4392,457,0 chrX 726915 . G T 4006.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=18.9634;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=22.89;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4006,418,0 chrX 726973 . A G 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-1.067;QD=19.26;ReadPosRankSum=1.686;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2942,318,0 chrX 726974 . C A 2981 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.87;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3014,315,0 chrX 727023 . G C 3221.92 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=19.65;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,159:164:99:3255,354,0 chrX 727104 . G A 3275.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.28;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3275,342,0 chrX 727128 . T A 3058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.602;QD=22.00;ReadPosRankSum=1.657;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3091,327,0 chrX 727369 . T C 4851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.330;DP=207;Dels=0.00;FS=13.322;HaplotypeScore=8.9017;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.793;QD=23.43;ReadPosRankSum=4.490;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:7,200:207:99:4851,522,0 chrX 727921 . A T 5812.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=20.4864;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.12;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5812,610,0 chrX 728001 . C T 4456.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.3654;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.28;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4456,483,0 chrX 728085 . C T 5053.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.1892;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.06;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5053,532,0 chrX 728247 . T C 3711.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=20.28;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3711,414,0 chrX 728336 . G A 2317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.150;DP=116;Dels=0.00;FS=6.135;HaplotypeScore=6.2024;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=0;MQRankSum=1.979;QD=19.97;ReadPosRankSum=1.936;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2350,261,0 chrX 728337 . T G 2305 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.02;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=0;QD=19.87;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2338,261,0 chrX 728402 . T C 2095 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.23;MQ0=0;QD=21.16;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2128,231,0 chrX 728412 . G A 1955 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=19.36;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1988,210,0 chrX 728429 . A G 1523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=79.6314;MLEAC=2;MLEAF=1.00;MQ=26.12;MQ0=0;MQRankSum=-1.732;QD=15.54;ReadPosRankSum=1.626;SB=-9.601e+01 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1556,171,0 chrX 728473 . A G 1199 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.360;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.25;MQ0=0;MQRankSum=-1.235;QD=13.03;ReadPosRankSum=3.360;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,88:92:99:1232,132,0 chrX 728509 . C A 1308 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.97;MQ0=3;QD=17.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1341,141,0 chrX 728549 . G T 684 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.183;DP=53;Dels=0.00;FS=47.702;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.17;MQ0=16;MQRankSum=3.196;QD=12.91;ReadPosRankSum=2.492;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:20,33:53:75:717,75,0 chrX 728550 . G C 606 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.643;DP=53;Dels=0.00;FS=47.702;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.17;MQ0=16;MQRankSum=3.196;QD=11.43;ReadPosRankSum=2.341;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:20,32:53:75:639,75,0 chrX 728554 . G C 610 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.799;DP=54;Dels=0.00;FS=56.394;HaplotypeScore=2.7697;MLEAC=2;MLEAF=1.00;MQ=20.63;MQ0=17;MQRankSum=3.532;QD=11.30;ReadPosRankSum=1.977;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:21,32:54:75:643,75,0 chrX 728555 . A G 658 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.955;DP=54;Dels=0.00;FS=56.394;HaplotypeScore=2.7697;MLEAC=2;MLEAF=1.00;MQ=20.63;MQ0=17;MQRankSum=3.532;QD=12.19;ReadPosRankSum=1.933;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:22,32:54:75:691,75,0 chrX 728557 . C G 644 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.733;DP=55;Dels=0.00;FS=56.394;HaplotypeScore=2.7697;MLEAC=2;MLEAF=1.00;MQ=20.44;MQ0=18;MQRankSum=3.532;QD=11.71;ReadPosRankSum=1.577;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:22,32:55:75:677,75,0 chrX 728569 . C T 519 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.485;DP=59;Dels=0.00;FS=68.277;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=17.83;MQ0=24;MQRankSum=4.021;QD=8.80;ReadPosRankSum=-0.598;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:31,28:59:60:552,60,0 chrX 728570 . A G 492 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.835;DP=61;Dels=0.00;FS=68.277;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=17.53;MQ0=26;MQRankSum=4.021;QD=8.07;ReadPosRankSum=-0.845;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:31,28:61:60:525,60,0 chrX 744137 . T C 75.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=61;Dels=0.00;FS=7.597;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.86;MQ0=15;MQRankSum=-1.281;QD=1.23;ReadPosRankSum=-1.732;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:1,60:61:15:108,15,0 chrX 744155 . A G 75.26 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.93;MQ0=15;QD=1.25;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:15:108,15,0 chrX 744270 . C A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.23;MQ0=0;QD=1.20;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:6:43,6,0 chrX 744312 . G A 97.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.84;MQ0=0;QD=8.83;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:130,18,0 chrX 744331 . T C 97.13 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.27;MQ0=0;QD=7.47;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:130,18,0 chrX 744347 . A G 97.13 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.06;MQ0=0;QD=6.94;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:130,18,0 chrX 744495 . G T 23.24 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.74;MQ0=1;MQRankSum=0.000;QD=3.32;ReadPosRankSum=0.720;SB=-2.116e-01 GT:AD:DP:GQ:PL 0/1:3,4:7:10:53,0,10 chrX 744499 . C T 23.24 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.74;MQ0=1;MQRankSum=0.720;QD=3.32;ReadPosRankSum=0.720;SB=-2.116e-01 GT:AD:DP:GQ:PL 0/1:3,4:7:10:53,0,10 chrX 744505 . A T 23.24 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.74;MQ0=1;MQRankSum=1.380;QD=3.32;ReadPosRankSum=1.380;SB=-2.116e-01 GT:AD:DP:GQ:PL 0/1:3,4:7:10:53,0,10 chrX 744508 . G A 23.24 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.00;MQ0=0;MQRankSum=-0.720;QD=3.87;ReadPosRankSum=1.380;SB=-2.116e-01 GT:AD:DP:GQ:PL 0/1:2,4:6:10:53,0,10 chrX 744510 . G T 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=9.09;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:87,12,0 chrX 744513 . C T 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=9.09;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:87,12,0 chrX 744530 . G T 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=10.90;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:87,12,0 chrX 744535 . T A 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=10.90;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:87,12,0 chrX 744537 . G C 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=10.90;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:87,12,0 chrX 744542 . C T 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=10.90;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:87,12,0 chrX 744552 . C T 32.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=8.24;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:65,9,0 chrX 745018 . G A 121.12 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=94;Dels=0.00;FS=18.921;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=6.14;MQ0=75;MQRankSum=3.344;QD=1.29;ReadPosRankSum=2.931;SB=-2.100e+00 GT:AD:DP:GQ:PL 1/1:74,19:94:5:152,5,0 chrX 745028 . T C 121.12 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.014;DP=97;Dels=0.00;FS=18.921;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=6.04;MQ0=78;MQRankSum=3.592;QD=1.25;ReadPosRankSum=3.509;SB=-2.100e+00 GT:AD:DP:GQ:PL 1/1:28,24:97:5:152,5,0 chrX 745031 . T C 121.12 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.289;DP=97;Dels=0.00;FS=18.921;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=6.04;MQ0=78;MQRankSum=3.427;QD=1.25;ReadPosRankSum=2.931;SB=-2.100e+00 GT:AD:DP:GQ:PL 1/1:79,18:97:5:152,5,0 chrX 745070 . G A 140.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=88;Dels=0.00;FS=12.420;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=6.35;MQ0=69;MQRankSum=3.633;QD=1.59;ReadPosRankSum=-3.144;SB=-2.197e+01 GT:AD:DP:GQ:PL 1/1:74,14:88:24:173,24,0 chrX 745076 . G A 121.12 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=90;Dels=0.00;FS=22.175;HaplotypeScore=3.5242;MLEAC=2;MLEAF=1.00;MQ=7.01;MQ0=69;MQRankSum=-2.262;QD=1.35;ReadPosRankSum=0.715;SB=-2.100e+00 GT:AD:DP:GQ:PL 1/1:63,11:90:5:152,5,0 chrX 745262 . C T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.092;DP=39;Dels=0.00;FS=18.248;HaplotypeScore=32.9632;MLEAC=1;MLEAF=0.500;MQ=23.19;MQ0=6;MQRankSum=2.567;QD=0.56;ReadPosRankSum=1.960;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,9:39:52:52,0,193 chrX 745270 . A G,T 445.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=15.7882;MLEAC=1,1;MLEAF=0.500,0.500;MQ=23.51;MQ0=6;QD=10.85;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/2:0,19,22:41:91:505,369,351,136,0,91 chrX 745294 . C A 450.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=51;Dels=0.00;FS=1.850;HaplotypeScore=30.7698;MLEAC=2;MLEAF=1.00;MQ=24.32;MQ0=7;MQRankSum=2.279;QD=8.83;ReadPosRankSum=2.675;SB=-1.201e+02 GT:AD:DP:GQ:PL 1/1:15,36:51:1:479,1,0 chrX 745295 . A T 259.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.156;DP=51;Dels=0.00;FS=10.268;HaplotypeScore=30.7698;MLEAC=1;MLEAF=0.500;MQ=24.32;MQ0=7;MQRankSum=3.275;QD=5.08;ReadPosRankSum=3.156;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:20,15:51:99:289,0,108 chrX 745296 . A G 602 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=29.1924;MLEAC=2;MLEAF=1.00;MQ=24.32;MQ0=7;QD=11.80;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:72:635,72,0 chrX 745343 . A G 221.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;DP=35;Dels=0.00;FS=22.961;HaplotypeScore=10.6424;MLEAC=1;MLEAF=0.500;MQ=23.27;MQ0=5;MQRankSum=3.970;QD=6.31;ReadPosRankSum=-2.224;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:19,16:35:99:251,0,114 chrX 745361 . T C 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.74;MQ0=4;QD=1.06;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,13:14:6:46,6,0 chrX 745447 . T C 128.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.395;DP=37;Dels=0.00;FS=1.289;HaplotypeScore=34.7384;MLEAC=1;MLEAF=0.500;MQ=26.59;MQ0=0;MQRankSum=2.682;QD=3.46;ReadPosRankSum=2.621;SB=-1.170e+02 GT:AD:DP:GQ:PL 0/1:21,16:37:99:158,0,292 chrX 745448 . A G 226.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254;DP=37;Dels=0.00;FS=5.029;HaplotypeScore=35.6051;MLEAC=1;MLEAF=0.500;MQ=26.59;MQ0=0;MQRankSum=2.220;QD=6.11;ReadPosRankSum=-1.977;SB=-6.501e+01 GT:AD:DP:GQ:PL 0/1:19,15:37:99:256,0,171 chrX 745453 . A G 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.031;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=19.3734;MLEAC=1;MLEAF=0.500;MQ=27.32;MQ0=1;MQRankSum=1.263;QD=0.74;ReadPosRankSum=1.665;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:33,7:42:61:61,0,493 chrX 745466 . T C 684.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.506;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.0893;MLEAC=1;MLEAF=0.500;MQ=27.33;MQ0=2;MQRankSum=1.368;QD=11.40;ReadPosRankSum=-0.536;SB=-4.730e+02 GT:AD:DP:GQ:PL 0/1:9,50:60:51:714,0,51 chrX 745493 . C A 129.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.026;DP=78;Dels=0.00;FS=15.804;HaplotypeScore=107.1746;MLEAC=1;MLEAF=0.500;MQ=27.03;MQ0=2;MQRankSum=0.962;QD=1.65;ReadPosRankSum=-1.191;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:62,16:78:99:159,0,711 chrX 745504 . A G 154.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.901;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=163.0415;MLEAC=2;MLEAF=1.00;MQ=26.74;MQ0=1;MQRankSum=-0.716;QD=1.98;ReadPosRankSum=1.547;SB=-7.931e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:1:183,1,0 chrX 745509 . T A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433;DP=78;Dels=0.00;FS=55.034;HaplotypeScore=95.4745;MLEAC=1;MLEAF=0.500;MQ=26.74;MQ0=1;MQRankSum=1.544;QD=0.16;ReadPosRankSum=-0.229;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,18:78:42:42,0,405 chrX 745544 . A G 238 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.245;DP=58;Dels=0.00;FS=52.263;HaplotypeScore=42.4940;MLEAC=2;MLEAF=1.00;MQ=25.57;MQ0=0;MQRankSum=-1.944;QD=4.10;ReadPosRankSum=5.117;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:11,47:58:30:271,30,0 chrX 745545 . A G 233 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=47;Dels=0.00;FS=25.567;HaplotypeScore=28.9886;MLEAC=2;MLEAF=1.00;MQ=24.69;MQ0=0;MQRankSum=-0.515;QD=4.96;ReadPosRankSum=3.260;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:4,43:47:30:266,30,0 chrX 745547 . G T 218 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=17.1946;MLEAC=2;MLEAF=1.00;MQ=24.25;MQ0=0;QD=5.07;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:30:251,30,0 chrX 745548 . A G 114.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.966;DP=44;Dels=0.00;FS=2.420;HaplotypeScore=19.1813;MLEAC=1;MLEAF=0.500;MQ=24.37;MQ0=0;MQRankSum=-0.017;QD=2.59;ReadPosRankSum=-0.427;SB=-1.069e+02 GT:AD:DP:GQ:PL 0/1:6,38:44:44:144,0,44 chrX 745550 . A G 12.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;DP=47;Dels=0.00;FS=2.433;HaplotypeScore=26.0973;MLEAC=1;MLEAF=0.500;MQ=24.69;MQ0=0;MQRankSum=0.207;QD=0.26;ReadPosRankSum=0.462;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,6:47:42:42,0,201 chrX 745553 . G A 16.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;DP=48;Dels=0.00;FS=42.312;HaplotypeScore=27.8192;MLEAC=1;MLEAF=0.500;MQ=24.79;MQ0=0;MQRankSum=-1.148;QD=0.34;ReadPosRankSum=2.504;SB=-6.410e-03 GT:AD:DP:GQ:PL 0/1:40,8:48:46:46,0,227 chrX 745593 . C A 176.03 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=10.2786;MLEAC=2;MLEAF=1.00;MQ=22.59;MQ0=0;QD=4.00;SB=-5.104e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:24:209,24,0 chrX 745594 . G A 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.176;DP=44;Dels=0.00;FS=14.577;HaplotypeScore=10.2786;MLEAC=1;MLEAF=0.500;MQ=22.59;MQ0=0;MQRankSum=0.198;QD=0.57;ReadPosRankSum=-1.445;SB=-3.925e+01 GT:AD:DP:GQ:PL 0/1:36,8:44:55:55,0,112 chrX 745597 . A G 156.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.461;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=10.2786;MLEAC=2;MLEAF=1.00;MQ=22.59;MQ0=0;MQRankSum=0.330;QD=3.55;ReadPosRankSum=-0.242;SB=-4.902e+01 GT:AD:DP:GQ:PL 1/1:4,37:44:21:189,21,0 chrX 745598 . A T 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;DP=44;Dels=0.00;FS=14.577;HaplotypeScore=35.5014;MLEAC=1;MLEAF=0.500;MQ=22.59;MQ0=0;MQRankSum=-0.046;QD=0.50;ReadPosRankSum=-1.415;SB=-3.925e+01 GT:AD:DP:GQ:PL 0/1:36,8:44:52:52,0,111 chrX 745619 . G A 91.26 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=10.7932;MLEAC=2;MLEAF=1.00;MQ=23.70;MQ0=0;QD=3.15;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,29:29:15:124,15,0 chrXI 347 . A G 358 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.62;MQ0=3;QD=15.57;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:45:391,45,0 chrXI 356 . T C 297.46 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.937;DP=23;Dels=0.00;FS=6.043;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.62;MQ0=3;MQRankSum=0.142;QD=12.93;ReadPosRankSum=-1.087;SB=-1.815e+02 GT:AD:DP:GQ:PL 0/1:7,16:23:1:326,0,1 chrXI 373 . C T 337.17 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=21;Dels=0.00;FS=5.798;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.56;MQ0=2;MQRankSum=-0.503;QD=16.06;ReadPosRankSum=2.404;SB=-1.842e+02 GT:AD:DP:GQ:PL 1/1:5,16:21:17:370,17,0 chrXI 399 . T C 317.17 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.054;DP=18;Dels=0.00;FS=3.039;HaplotypeScore=1.9841;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;MQRankSum=-0.913;QD=17.62;ReadPosRankSum=2.178;SB=-1.902e+02 GT:AD:DP:GQ:PL 1/1:2,16:18:17:350,17,0 chrXI 508 . A T 51.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.05;MQ0=2;MQRankSum=0.742;QD=5.77;ReadPosRankSum=0.742;SB=-5.256e+01 GT:AD:DP:GQ:PL 1/1:1,8:9:9:84,9,0 chrXI 509 . G T 51.97 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.05;MQ0=2;QD=5.77;SB=-5.772e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:84,9,0 chrXI 546 . T G 102.26 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.51;MQ0=3;QD=5.68;SB=-5.426e+01 GT:AD:DP:GQ:PL 1/1:0,17:18:15:135,15,0 chrXI 581 . A C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=1;QD=1.65;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,11:12:6:51,6,0 chrXI 595 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=21.86;MQ0=2;QD=1.45;SB=-5.171e+01 GT:AD:DP:GQ:PL 1/1:0,14:15:6:53,6,0 chrXI 780 . C T 74.51 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.43;MQ0=6;QD=6.77;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:107,12,0 chrXI 840 . C T 74.51 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.81;MQ0=6;QD=7.45;SB=-2.755e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:107,12,0 chrXI 1115 . G A 58.51 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.98;MQ0=9;QD=4.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:12:91,12,0 chrXI 1490 . G C 171.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;DP=152;Dels=0.00;FS=47.530;HaplotypeScore=34.2064;MLEAC=1;MLEAF=0.500;MQ=15.25;MQ0=73;MQRankSum=-2.491;QD=1.13;ReadPosRankSum=0.395;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,78:152:99:201,0,443 chrXI 1508 . G T 236.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.578;DP=146;Dels=0.01;FS=15.678;HaplotypeScore=15.7079;MLEAC=1;MLEAF=0.500;MQ=14.87;MQ0=71;MQRankSum=0.667;QD=1.62;ReadPosRankSum=-1.670;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,43:145:99:266,0,325 chrXI 1525 . C A 157.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.301;DP=138;Dels=0.01;FS=22.116;HaplotypeScore=24.2586;MLEAC=1;MLEAF=0.500;MQ=12.87;MQ0=69;MQRankSum=1.986;QD=1.14;ReadPosRankSum=0.977;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:103,34:137:99:187,0,124 chrXI 1534 . A G 147.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.452;DP=142;Dels=0.00;FS=30.146;HaplotypeScore=41.3822;MLEAC=1;MLEAF=0.500;MQ=12.16;MQ0=75;MQRankSum=2.595;QD=1.04;ReadPosRankSum=1.226;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,33:142:73:177,0,73 chrXI 1551 . G A 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.983;DP=143;Dels=0.00;FS=59.159;HaplotypeScore=35.3218;MLEAC=1;MLEAF=0.500;MQ=11.64;MQ0=78;MQRankSum=3.008;QD=0.60;ReadPosRankSum=1.821;SB=0.015 GT:AD:DP:GQ:PL 0/1:97,45:143:56:116,0,56 chrXI 1679 . T C 884 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.144;DP=92;Dels=0.00;FS=4.423;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=26.07;MQ0=14;MQRankSum=3.214;QD=9.61;ReadPosRankSum=-2.930;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:9,82:92:60:917,60,0 chrXI 1708 . T A 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.701;DP=59;Dels=0.00;FS=7.984;HaplotypeScore=6.4887;MLEAC=1;MLEAF=0.500;MQ=23.08;MQ0=14;MQRankSum=0.193;QD=1.25;ReadPosRankSum=-2.695;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,7:59:99:104,0,280 chrXI 1785 . C T 151.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=19.12;MQ0=12;MQRankSum=2.011;QD=4.31;ReadPosRankSum=-1.022;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,18:35:81:181,0,81 chrXI 1813 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=9.83;MQ0=12;MQRankSum=-1.741;QD=0.77;ReadPosRankSum=1.393;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,21:22:6:48,6,0 chrXI 2254 . A G 119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.064;DP=208;Dels=0.00;FS=73.327;HaplotypeScore=43.0022;MLEAC=1;MLEAF=0.500;MQ=32.00;MQ0=27;MQRankSum=2.489;QD=0.57;ReadPosRankSum=3.720;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:160,48:208:99:149,0,2819 chrXI 2259 . C T 175.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.527;DP=182;Dels=0.00;FS=63.326;HaplotypeScore=39.4416;MLEAC=1;MLEAF=0.500;MQ=31.90;MQ0=27;MQRankSum=1.941;QD=0.96;ReadPosRankSum=2.587;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:134,45:182:99:205,0,2160 chrXI 2340 . A T 216.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.864;DP=53;Dels=0.00;FS=38.904;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.73;MQ0=16;MQRankSum=-1.029;QD=4.08;ReadPosRankSum=-0.417;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:6,47:53:27:249,27,0 chrXI 2355 . T C 501 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.98;MQ0=16;QD=6.96;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:60:534,60,0 chrXI 2369 . C T 133.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;DP=132;Dels=0.00;FS=50.014;HaplotypeScore=7.7134;MLEAC=1;MLEAF=0.500;MQ=26.26;MQ0=19;MQRankSum=0.614;QD=1.01;ReadPosRankSum=-3.183;SB=0.062 GT:AD:DP:GQ:PL 0/1:115,17:132:99:163,0,1068 chrXI 2391 . G T 426.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.118;DP=237;Dels=0.00;FS=2.390;HaplotypeScore=72.7227;MLEAC=1;MLEAF=0.500;MQ=31.90;MQ0=23;MQRankSum=-0.488;QD=1.80;ReadPosRankSum=-2.722;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:180,57:237:99:456,0,2519 chrXI 2399 . T C 194.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.725;DP=248;Dels=0.00;FS=26.914;HaplotypeScore=108.8267;MLEAC=1;MLEAF=0.500;MQ=32.11;MQ0=22;MQRankSum=-1.029;QD=0.78;ReadPosRankSum=1.432;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:206,42:248:99:224,0,3002 chrXI 2400 . C T 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.226;DP=247;Dels=0.00;FS=52.533;HaplotypeScore=108.8267;MLEAC=1;MLEAF=0.500;MQ=32.18;MQ0=22;MQRankSum=-0.796;QD=0.17;ReadPosRankSum=3.254;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:219,27:246:73:73,0,3082 chrXI 2403 . G A 2059.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.463;DP=245;Dels=0.00;FS=22.510;HaplotypeScore=72.6027;MLEAC=1;MLEAF=0.500;MQ=32.36;MQ0=24;MQRankSum=1.965;QD=8.40;ReadPosRankSum=-1.243;SB=-3.900e+02 GT:AD:DP:GQ:PL 0/1:101,144:245:99:2089,0,1119 chrXI 2428 . C G 939.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.831;DP=226;Dels=0.00;FS=20.177;HaplotypeScore=5.7188;MLEAC=1;MLEAF=0.500;MQ=33.63;MQ0=21;MQRankSum=-2.504;QD=4.15;ReadPosRankSum=2.068;SB=-2.770e+02 GT:AD:DP:GQ:PL 0/1:144,80:225:99:969,0,2049 chrXI 2469 . T C 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.948;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=46.3738;MLEAC=1;MLEAF=0.500;MQ=34.66;MQ0=10;MQRankSum=-2.004;QD=0.47;ReadPosRankSum=-2.617;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,24:123:88:88,0,1059 chrXI 2483 . T C 121.13 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=11.0070;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=7;QD=3.56;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,30:34:18:154,18,0 chrXI 2547 . G T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.673;DP=32;Dels=0.00;FS=36.518;HaplotypeScore=8.8645;MLEAC=2;MLEAF=1.00;MQ=18.24;MQ0=5;MQRankSum=-1.513;QD=0.68;ReadPosRankSum=-1.832;SB=1.24 GT:AD:DP:GQ:PL 1/1:20,12:32:6:53,6,0 chrXI 2549 . C A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.114;DP=33;Dels=0.00;FS=3.332;HaplotypeScore=8.8645;MLEAC=2;MLEAF=1.00;MQ=19.02;MQ0=5;MQRankSum=-0.248;QD=0.78;ReadPosRankSum=1.486;SB=-1.586e+02 GT:AD:DP:GQ:PL 1/1:2,31:33:6:57,6,0 chrXI 2550 . A G 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.114;DP=33;Dels=0.00;FS=3.332;HaplotypeScore=8.8645;MLEAC=2;MLEAF=1.00;MQ=19.02;MQ0=5;MQRankSum=-0.248;QD=0.69;ReadPosRankSum=1.486;SB=-1.546e+02 GT:AD:DP:GQ:PL 1/1:2,31:33:6:54,6,0 chrXI 2556 . T G 104.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.151;DP=47;Dels=0.00;FS=19.260;HaplotypeScore=22.9572;MLEAC=2;MLEAF=1.00;MQ=20.17;MQ0=7;MQRankSum=3.817;QD=2.22;ReadPosRankSum=1.545;SB=-1.833e+02 GT:AD:DP:GQ:PL 1/1:17,30:47:15:137,15,0 chrXI 2565 . C T 55.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;DP=71;Dels=0.00;FS=20.828;HaplotypeScore=28.6631;MLEAC=1;MLEAF=0.500;MQ=20.59;MQ0=11;MQRankSum=0.363;QD=0.77;ReadPosRankSum=-0.750;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:49,22:71:85:85,0,196 chrXI 2610 . T C 147.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.838;DP=95;Dels=0.00;FS=39.229;HaplotypeScore=16.7115;MLEAC=1;MLEAF=0.500;MQ=18.56;MQ0=25;MQRankSum=3.539;QD=1.55;ReadPosRankSum=1.826;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,25:95:99:177,0,348 chrXI 2624 . C T 98.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.315;DP=86;Dels=0.00;FS=66.515;HaplotypeScore=10.7465;MLEAC=1;MLEAF=0.500;MQ=18.79;MQ0=23;MQRankSum=0.469;QD=1.14;ReadPosRankSum=-3.426;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,35:86:99:128,0,342 chrXI 2626 . T A 128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;DP=82;Dels=0.00;FS=66.515;HaplotypeScore=9.9579;MLEAC=1;MLEAF=0.500;MQ=19.20;MQ0=21;MQRankSum=0.729;QD=1.56;ReadPosRankSum=-3.369;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,34:82:99:158,0,345 chrXI 2639 . C T 97.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;DP=72;Dels=0.00;FS=49.618;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=19.15;MQ0=21;MQRankSum=0.179;QD=1.35;ReadPosRankSum=-4.550;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,28:72:99:127,0,322 chrXI 2655 . C G 249 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.7355;MLEAC=2;MLEAF=1.00;MQ=15.78;MQ0=17;QD=5.93;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:33:282,33,0 chrXI 2659 . A T 100.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.376;DP=36;Dels=0.00;FS=6.607;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=14.89;MQ0=16;MQRankSum=0.741;QD=2.79;ReadPosRankSum=0.423;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:5,31:36:15:133,15,0 chrXI 2703 . G A 182.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.125;DP=30;Dels=0.00;FS=16.385;HaplotypeScore=6.3773;MLEAC=2;MLEAF=1.00;MQ=30.16;MQ0=0;MQRankSum=-0.540;QD=6.07;ReadPosRankSum=-1.039;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:2,28:30:24:215,24,0 chrXI 2812 . G A 196.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;DP=33;Dels=0.00;FS=1.946;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=24.80;MQ0=5;MQRankSum=1.474;QD=5.94;ReadPosRankSum=-1.428;SB=-2.982e+01 GT:AD:DP:GQ:PL 0/1:14,19:33:59:226,0,59 chrXI 2828 . A G 74.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=22.86;MQ0=2;MQRankSum=2.106;QD=3.52;ReadPosRankSum=-1.775;SB=-3.059e+01 GT:AD:DP:GQ:PL 0/1:11,10:21:44:104,0,44 chrXI 2928 . A G 540 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=14.21;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:63:573,63,0 chrXI 3021 . A T 876 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.46;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:96:909,96,0 chrXI 3393 . G A 2224 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=61.17;MQ0=0;QD=22.24;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2257,243,0 chrXI 4934 . G A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=27.11;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3259,337,0 chrXI 5928 . G A 3317.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3317,345,0 chrXI 6589 . A G 3673.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.3604;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.10;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3673,411,0 chrXI 7040 . T C 5573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=252;Dels=0.00;FS=4.248;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-0.582;QD=22.12;ReadPosRankSum=1.663;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:1,249:252:99:5573,601,0 chrXI 7066 . C T 5986.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.38;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,280:280:99:5986,619,0 chrXI 7067 . C T 5942.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=21.15;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:5942,616,0 chrXI 7552 . A T 2199 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.77;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2232,240,0 chrXI 7571 . T G 2155 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.68;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2188,240,0 chrXI 7595 . C T 1861 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.7736;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.98;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1894,204,0 chrXI 7704 . A G 2123 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.40;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2156,231,0 chrXI 7840 . G T 2892 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.82;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2925,306,0 chrXI 8031 . C G 3983.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.0701;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3983,444,0 chrXI 8317 . A G 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.291;QD=21.09;ReadPosRankSum=1.707;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2944,321,0 chrXI 8354 . G T 2704 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.0227;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=17.11;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2737,294,0 chrXI 10220 . C T 3883.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.0348;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3883,400,0 chrXI 10550 . C T 3932.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3932,412,0 chrXI 10762 . A G 5953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=249;Dels=0.00;FS=10.487;HaplotypeScore=11.0958;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.614;QD=23.91;ReadPosRankSum=2.964;SB=-2.979e+03 GT:AD:DP:GQ:PL 1/1:3,244:249:99:5953,634,0 chrXI 11792 . A G 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.6050;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.306;QD=22.84;ReadPosRankSum=1.707;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3162,339,0 chrXI 13039 . C G 3901.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.64;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3901,426,0 chrXI 13068 . G A 3161 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.21;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3194,331,0 chrXI 13236 . T C 3019 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=21.72;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3052,336,0 chrXI 13240 . T A 3080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-0.885;QD=22.81;ReadPosRankSum=1.706;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3113,324,0 chrXI 13260 . A G 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.802;QD=21.01;ReadPosRankSum=1.700;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2344,249,0 chrXI 13310 . G A 2277 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.6453;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.28;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2310,246,0 chrXI 13378 . A G 4074.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.41;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4074,447,0 chrXI 13635 . A T 2436 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.61;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2469,255,0 chrXI 13729 . T G 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=123;Dels=0.00;FS=3.119;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-1.160;QD=20.37;ReadPosRankSum=1.703;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2538,273,0 chrXI 13945 . C A 3710.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=24.57;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3710,390,0 chrXI 13973 . A G 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.1159;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.914;QD=23.33;ReadPosRankSum=1.711;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3756,399,0 chrXI 14406 . T C 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.083;DP=141;Dels=0.00;FS=14.105;HaplotypeScore=13.2869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.582;QD=22.11;ReadPosRankSum=3.396;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:4,136:141:99:3150,354,0 chrXI 14794 . T C 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=137;Dels=0.00;FS=6.378;HaplotypeScore=11.2910;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.709;QD=21.72;ReadPosRankSum=2.396;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3009,336,0 chrXI 15450 . G T 366.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.080;DP=193;Dels=0.00;FS=83.802;HaplotypeScore=9.5576;MLEAC=1;MLEAF=0.500;MQ=54.34;MQ0=1;MQRankSum=-9.875;QD=1.90;ReadPosRankSum=5.276;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,43:193:99:396,0,2992 chrXI 17529 . G A 4491.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.6047;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.57;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4491,475,0 chrXI 20616 . G A 4757.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.7939;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4757,522,0 chrXI 20952 . G A 4388.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.34;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4388,471,0 chrXI 21193 . C T 2273 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.04;FS=0.000;HaplotypeScore=13.4028;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.94;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2306,246,0 chrXI 21250 . A T 268 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=95.6671;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=2.25;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:33:301,33,0 chrXI 21328 . C T 2497 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.02;FS=0.000;HaplotypeScore=17.1110;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=22.91;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2530,267,0 chrXI 21391 . T C 2709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=120;Dels=0.00;FS=3.010;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.093;QD=22.57;ReadPosRankSum=2.326;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2742,294,0 chrXI 21546 . A G 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=139;Dels=0.00;FS=3.042;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.628;QD=20.22;ReadPosRankSum=2.414;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2844,315,0 chrXI 21568 . T C 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=3.045;HaplotypeScore=3.8865;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.423;QD=18.33;ReadPosRankSum=1.678;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2361,261,0 chrXI 21574 . C T 2498 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.3670;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=19.36;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2531,267,0 chrXI 21695 . G A 2959 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.0192;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.76;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2992,318,0 chrXI 21803 . G T 2692 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.81;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2725,294,0 chrXI 23306 . A G 5501.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.64;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,239:243:99:5501,591,0 chrXI 23463 . T C 6312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=273;Dels=0.00;FS=6.395;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.409;QD=23.12;ReadPosRankSum=2.342;SB=-3.461e+03 GT:AD:DP:GQ:PL 1/1:2,271:273:99:6312,699,0 chrXI 23688 . T C 5119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.540;QD=20.39;ReadPosRankSum=1.677;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:1,249:251:99:5119,567,0 chrXI 24181 . A G 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.198;QD=21.23;ReadPosRankSum=1.662;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3217,363,0 chrXI 24268 . G C 2904 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.83;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2937,321,0 chrXI 24547 . G A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.38;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3788,397,0 chrXI 24575 . G A 4082.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.06;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4082,438,0 chrXI 25712 . C T 4187.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.63;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4187,462,0 chrXI 26136 . C A 4523.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4523,481,0 chrXI 27541 . C T 3439.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.05;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3439,355,0 chrXI 27643 . T C 3033 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3066,333,0 chrXI 28033 . T C 3873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.5589;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.513;QD=23.91;ReadPosRankSum=1.647;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3873,420,0 chrXI 28300 . G C 4313.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.12;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4313,477,0 chrXI 30136 . T C 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=135;Dels=0.00;FS=3.043;HaplotypeScore=10.2303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.574;QD=22.88;ReadPosRankSum=2.322;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3122,342,0 chrXI 30173 . A G 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.664;DP=150;Dels=0.00;FS=12.332;HaplotypeScore=12.9960;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.555;QD=22.47;ReadPosRankSum=3.769;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:5,145:150:99:3371,363,0 chrXI 30708 . T C 4514.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.09;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,209:214:99:4514,483,0 chrXI 30716 . T G 4616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=214;Dels=0.00;FS=3.666;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-1.392;QD=21.57;ReadPosRankSum=1.700;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4616,498,0 chrXI 31077 . A G 2947 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.0385;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.19;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2980,324,0 chrXI 31728 . G T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.81;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3249,345,0 chrXI 31754 . T C 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=143;Dels=0.00;FS=3.995;HaplotypeScore=5.8633;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.400;QD=21.57;ReadPosRankSum=1.708;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3117,336,0 chrXI 33673 . G A 5459.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.73;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5459,594,0 chrXI 34145 . T A 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=163;Dels=0.00;FS=4.718;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.053;QD=21.19;ReadPosRankSum=1.690;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3454,360,0 chrXI 34378 . C T 3658.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=24.23;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3658,376,0 chrXI 34404 . A G 4321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.5573;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.541;QD=22.86;ReadPosRankSum=1.604;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4321,477,0 chrXI 34444 . C G 4724.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.35;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,189:194:99:4724,505,0 chrXI 35136 . T C 4027.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4027,438,0 chrXI 35505 . C T 5658.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.18;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5658,607,0 chrXI 35593 . T C 4652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=213;Dels=0.00;FS=3.625;HaplotypeScore=6.5848;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.588;QD=21.84;ReadPosRankSum=1.716;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:4652,504,0 chrXI 35608 . C T 5178.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.71;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:0,224:228:99:5178,535,0 chrXI 35758 . T C 5567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;DP=241;Dels=0.00;FS=5.867;HaplotypeScore=17.6397;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.562;QD=23.10;ReadPosRankSum=2.970;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:3,233:241:99:5567,601,0 chrXI 35874 . T C 5409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=243;Dels=0.00;FS=3.119;HaplotypeScore=19.8822;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.429;QD=22.26;ReadPosRankSum=1.675;SB=-2.964e+03 GT:AD:DP:GQ:PL 1/1:1,241:243:99:5409,609,0 chrXI 36243 . T C 3653.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.87;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3653,399,0 chrXI 36249 . C G 3702.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.01;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3702,411,0 chrXI 36393 . G A 1996 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.18;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2029,210,0 chrXI 36454 . C T 1887 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=23.30;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1920,210,0 chrXI 36537 . C T 1014 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.05;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1047,111,0 chrXI 36695 . T C 1487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.986;QD=22.88;ReadPosRankSum=1.679;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1520,168,0 chrXI 36777 . A T 2012 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=26.13;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2045,216,0 chrXI 36900 . A G 2965 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.53;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2998,324,0 chrXI 36972 . G A 3066 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1767;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.53;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3099,324,0 chrXI 37146 . C T 4396.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=17.9613;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.26;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4396,463,0 chrXI 37242 . T G 4358.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=15.2853;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.79;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4358,483,0 chrXI 37338 . A G 3866.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.78;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3866,429,0 chrXI 37740 . T G 6305.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-3.308e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:6305,690,0 chrXI 38242 . G C 4428.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=21.50;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4428,489,0 chrXI 38739 . G A 3741.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.40;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,162:167:99:3741,402,0 chrXI 38767 . C T 3812.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.91;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3812,405,0 chrXI 41369 . G A 3807.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.56;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3807,394,0 chrXI 42678 . T C 2970 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.50;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3003,327,0 chrXI 46665 . G C 1651 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.19;MQ0=0;QD=21.44;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1684,192,0 chrXI 47182 . G A 2910 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3433;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.75;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2943,306,0 chrXI 47435 . A T 4384.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.7676;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.60;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,190:194:99:4384,471,0 chrXI 48295 . G C 7051.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=25.0736;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.27;SB=-3.787e+03 GT:AD:DP:GQ:PL 1/1:0,297:303:99:7051,789,0 chrXI 48790 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.35;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3509,364,0 chrXI 48808 . C T 3359.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.85;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3359,357,0 chrXI 48944 . C A 4096.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=15.9682;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.26;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4096,435,0 chrXI 49687 . T A 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=155;Dels=0.00;FS=7.080;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.968;QD=19.68;ReadPosRankSum=2.353;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3083,330,0 chrXI 49819 . C T 2565 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.0688;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=20.69;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2598,273,0 chrXI 50810 . C T 1903 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1936,204,0 chrXI 51512 . A G 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=4.143;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.114;QD=24.52;ReadPosRankSum=1.704;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3024,324,0 chrXI 51558 . C T 3178 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:3211,333,0 chrXI 52121 . G C 3984.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.64;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3984,435,0 chrXI 52801 . T A 4137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=-0.139;QD=21.77;ReadPosRankSum=1.714;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4137,444,0 chrXI 54789 . G A 5049.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.4423;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.48;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5049,561,0 chrXI 56302 . C T 4030.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4030,418,0 chrXI 57688 . T C 5012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=221;Dels=0.00;FS=9.082;HaplotypeScore=21.4641;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.705;QD=22.68;ReadPosRankSum=2.427;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:5012,567,0 chrXI 57957 . G C 4118.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.7318;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.13;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4118,447,0 chrXI 58110 . A G 4597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.00;FS=3.197;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.057;QD=24.19;ReadPosRankSum=1.641;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4597,498,0 chrXI 58239 . G A 5309.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=16.2871;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.79;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5309,565,0 chrXI 58428 . A G 3594.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.2628;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.75;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3594,396,0 chrXI 58464 . A G 3530.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.85;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3530,390,0 chrXI 59004 . T A 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.0918;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.505;QD=22.76;ReadPosRankSum=1.691;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3824,400,0 chrXI 60173 . G A 2250 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2283,237,0 chrXI 63993 . C A 1181 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=20.72;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1214,132,0 chrXI 63999 . C A 962 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=21.38;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:995,111,0 chrXI 64001 . G T 881 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;QD=20.02;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:914,99,0 chrXI 64008 . C A 662 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;QD=19.47;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:78:695,78,0 chrXI 64041 . T C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=1.20;SB=-1.327e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:6:48,6,0 chrXI 64200 . T C 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.077;DP=197;Dels=0.00;FS=15.711;HaplotypeScore=13.6538;MLEAC=1;MLEAF=0.500;MQ=57.16;MQ0=0;MQRankSum=1.409;QD=0.15;ReadPosRankSum=-5.840;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:156,41:197:59:59,0,3214 chrXI 64254 . C T 1356.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.808;DP=250;Dels=0.00;FS=8.577;HaplotypeScore=11.6004;MLEAC=1;MLEAF=0.500;MQ=57.48;MQ0=0;MQRankSum=3.737;QD=5.42;ReadPosRankSum=-3.752;SB=-4.300e+02 GT:AD:DP:GQ:PL 0/1:159,91:250:99:1386,0,2852 chrXI 64272 . T C 525.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.400;DP=242;Dels=0.00;FS=30.061;HaplotypeScore=11.8302;MLEAC=1;MLEAF=0.500;MQ=57.99;MQ0=0;MQRankSum=-0.757;QD=2.17;ReadPosRankSum=-5.585;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:191,50:242:99:555,0,3849 chrXI 64278 . T C 307.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.748;DP=232;Dels=0.00;FS=23.987;HaplotypeScore=13.4308;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=-1.810;QD=1.32;ReadPosRankSum=-6.531;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:190,41:232:99:337,0,3833 chrXI 64345 . T C 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=185;Dels=0.00;FS=7.375;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.302;QD=20.09;ReadPosRankSum=2.383;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3716,408,0 chrXI 66105 . C T 3487.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.25;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3487,372,0 chrXI 66233 . A T 2276 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7367;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=0.009;QD=20.14;ReadPosRankSum=2.737;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2309,261,0 chrXI 66234 . G A 2318 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=5.4891;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=20.70;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2351,261,0 chrXI 66236 . G A 2461 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.5157;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=21.97;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2494,264,0 chrXI 66285 . G A 2111 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.32;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2144,228,0 chrXI 66342 . T C 1982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.578;QD=22.02;ReadPosRankSum=1.694;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2015,219,0 chrXI 66546 . A G 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.668;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.407;QD=24.50;ReadPosRankSum=1.705;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3194,348,0 chrXI 66663 . A G 3396.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.63;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3396,369,0 chrXI 66678 . T C 3593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.4610;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=1.003;QD=20.89;ReadPosRankSum=1.712;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3593,393,0 chrXI 66804 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.32;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3231,339,0 chrXI 66860 . A G 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=148;Dels=0.00;FS=3.020;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.968;QD=21.24;ReadPosRankSum=2.382;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3176,345,0 chrXI 66882 . C T 3445.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.37;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3445,366,0 chrXI 67187 . A G 5625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=248;Dels=0.00;FS=3.118;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.268;QD=22.68;ReadPosRankSum=1.690;SB=-3.100e+03 GT:AD:DP:GQ:PL 1/1:1,245:248:99:5625,615,0 chrXI 67304 . G A 5855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=237;Dels=0.00;FS=4.573;HaplotypeScore=19.2813;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.052;QD=24.70;ReadPosRankSum=-0.243;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:1,234:237:99:5855,625,0 chrXI 67386 . G C 4196.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.77;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4196,456,0 chrXI 67440 . A C 4224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-1.596;QD=20.60;ReadPosRankSum=1.698;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4224,462,0 chrXI 67619 . A G 1799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7933;MLEAC=2;MLEAF=1.00;MQ=46.13;MQ0=0;MQRankSum=-0.845;QD=21.94;ReadPosRankSum=0.380;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1832,207,0 chrXI 67635 . C T 1444 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=1.8824;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=21.55;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,63:66:99:1477,159,0 chrXI 67641 . T C 1346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=66;Dels=0.00;FS=10.078;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=0;MQRankSum=-0.031;QD=20.39;ReadPosRankSum=2.894;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:3,63:66:99:1379,159,0 chrXI 67672 . G A 1771 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=21.86;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1804,192,0 chrXI 67691 . A C 1784 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.38;MQ0=0;QD=21.24;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1817,201,0 chrXI 67740 . C G 1214 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=10.9702;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=14.80;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1247,135,0 chrXI 67755 . G T 930 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=37.75;MQ0=0;QD=13.68;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:963,102,0 chrXI 67783 . T C 475.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;DP=84;Dels=0.00;FS=8.023;HaplotypeScore=27.2670;MLEAC=1;MLEAF=0.500;MQ=32.65;MQ0=0;MQRankSum=0.450;QD=5.65;ReadPosRankSum=-0.276;SB=-3.780e+02 GT:AD:DP:GQ:PL 0/1:26,58:84:91:505,0,91 chrXI 67802 . G A 692 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.7997;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=12.81;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:81:725,81,0 chrXI 67816 . G A 912 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=52.4643;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;QD=16.29;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:945,105,0 chrXI 67844 . G A 1132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=0;MQRankSum=-0.487;QD=17.69;ReadPosRankSum=1.407;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1165,109,0 chrXI 67862 . C G 1208 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=19.80;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1241,135,0 chrXI 67872 . C G 1030 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=17.17;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1063,117,0 chrXI 67884 . A G 735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=19.6240;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;MQRankSum=-0.624;QD=14.70;ReadPosRankSum=1.663;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:87:768,87,0 chrXI 67934 . T C 463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=31;Dels=0.00;FS=4.500;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;MQRankSum=-1.733;QD=14.94;ReadPosRankSum=0.950;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:57:496,57,0 chrXI 67955 . G A 474 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.81;MQ0=0;QD=15.29;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:60:507,60,0 chrXI 67997 . T A 1213 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.64;MQ0=0;QD=18.95;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1246,141,0 chrXI 67998 . C T 1224 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=37.30;MQ0=0;QD=18.55;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1257,144,0 chrXI 68014 . C T 2054 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=0;QD=22.82;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2087,228,0 chrXI 68113 . T A 213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.341;DP=24;Dels=0.00;FS=5.653;HaplotypeScore=15.8643;MLEAC=2;MLEAF=1.00;MQ=34.20;MQ0=0;MQRankSum=2.630;QD=8.88;ReadPosRankSum=3.341;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:5,19:24:27:246,27,0 chrXI 68117 . G A 204.01 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.12;MQ0=0;QD=7.85;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:27:237,27,0 chrXI 68137 . T A 968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=25.58;MQ0=0;MQRankSum=-1.068;QD=16.41;ReadPosRankSum=2.283;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1001,125,0 chrXI 68162 . A G 1634 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.22;MQ0=0;QD=21.22;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1667,200,0 chrXI 68168 . A T 1668 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.19;MQ0=0;QD=19.86;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1701,201,0 chrXI 68184 . C T 2143 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;QD=21.43;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2176,249,0 chrXI 68250 . T C 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.2057;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=0.388;QD=23.29;ReadPosRankSum=2.405;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2618,288,0 chrXI 68298 . C T 2467 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=21.64;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2500,273,0 chrXI 68337 . G A 1570 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=12.76;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1603,186,0 chrXI 68369 . G T 164.06 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=432.1283;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=0;QD=1.33;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:21:197,21,0 chrXI 68377 . G A 1006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.737;DP=140;Dels=0.00;FS=8.296;HaplotypeScore=83.1508;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;MQRankSum=-1.279;QD=7.19;ReadPosRankSum=3.395;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:4,136:140:99:1039,105,0 chrXI 68447 . A G 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=183;Dels=0.00;FS=7.170;HaplotypeScore=158.3059;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;MQRankSum=0.776;QD=16.66;ReadPosRankSum=2.423;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3081,342,0 chrXI 68563 . T C 4410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=196;Dels=0.00;FS=3.055;HaplotypeScore=7.9881;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;MQRankSum=-0.714;QD=22.50;ReadPosRankSum=1.661;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:4410,477,0 chrXI 68580 . T C 4247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.703;DP=204;Dels=0.00;FS=12.152;HaplotypeScore=7.3441;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;MQRankSum=-0.558;QD=20.82;ReadPosRankSum=3.773;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:5,197:204:99:4247,483,0 chrXI 68691 . A C 5177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=246;Dels=0.00;FS=3.892;HaplotypeScore=10.2706;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-0.742;QD=21.04;ReadPosRankSum=1.690;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:1,244:246:99:5177,576,0 chrXI 68802 . G A 2195 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=12.47;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:2228,243,0 chrXI 68824 . T C 3446.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.1238;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=16.41;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:3446,387,0 chrXI 68859 . G A 5070.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=18.4873;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.04;SB=-3.195e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5070,541,0 chrXI 68934 . G A 7633.01 PASS AC=2;AF=1.00;AN=2;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=20.5057;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.85;SB=-4.219e+03 GT:AD:DP:GQ:PL 1/1:0,315:320:99:7633,814,0 chrXI 68969 . T C 7270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=324;Dels=0.00;FS=5.890;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.359;QD=22.44;ReadPosRankSum=2.959;SB=-3.384e+03 GT:AD:DP:GQ:PL 1/1:3,318:324:99:7270,813,0 chrXI 68994 . C G 7214.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=16.6147;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.99;SB=-3.070e+03 GT:AD:DP:GQ:PL 1/1:0,324:328:99:7214,819,0 chrXI 69070 . A T 5801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=282;Dels=0.00;FS=7.308;HaplotypeScore=18.6144;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=1.547;QD=20.57;ReadPosRankSum=2.379;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:2,280:282:99:5801,627,0 chrXI 69087 . A C 4626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=255;Dels=0.00;FS=3.441;HaplotypeScore=9.5927;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=0.491;QD=18.14;ReadPosRankSum=1.691;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:4626,516,0 chrXI 69153 . C T 5644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.853;DP=299;Dels=0.00;FS=8.010;HaplotypeScore=26.9131;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=2.226;QD=18.88;ReadPosRankSum=-0.966;SB=-3.017e+03 GT:AD:DP:GQ:PL 1/1:2,297:299:99:5644,566,0 chrXI 69417 . C T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.6775;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=18.49;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3605,411,0 chrXI 69425 . C T 4101.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.30;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4101,430,0 chrXI 69662 . T C 5275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=237;Dels=0.00;FS=2.575;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=1.218;QD=22.26;ReadPosRankSum=2.868;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:3,232:237:99:5275,591,0 chrXI 69696 . G A 5705.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=12.7991;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=23.77;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5705,615,0 chrXI 69941 . G T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.8614;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=18.23;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:3536,387,0 chrXI 69942 . G A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.6386;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=18.64;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3579,396,0 chrXI 69964 . A G 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=201;Dels=0.00;FS=5.926;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.406;QD=18.14;ReadPosRankSum=2.954;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:3,195:201:99:3646,405,0 chrXI 70043 . T C 4330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=196;Dels=0.00;FS=3.124;HaplotypeScore=16.9466;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.188;QD=22.09;ReadPosRankSum=1.696;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:1,192:196:99:4330,486,0 chrXI 70228 . T C 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.979;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.1655;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=1.100;QD=20.17;ReadPosRankSum=-1.401;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2353,241,0 chrXI 70422 . A G 1246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=4.445;HaplotypeScore=4.3541;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=-1.462;QD=19.47;ReadPosRankSum=1.678;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1279,141,0 chrXI 70425 . A G 1202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=4.914;HaplotypeScore=3.5678;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.732;QD=19.08;ReadPosRankSum=1.676;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1235,132,0 chrXI 70540 . A T 2215 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=24.08;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2248,237,0 chrXI 70579 . A C 2106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=12.6999;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=1.076;QD=21.71;ReadPosRankSum=-1.149;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:1,94:97:99:2139,237,0 chrXI 70690 . T C 3508.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=19.82;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3508,393,0 chrXI 70692 . C T 3799.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=21.59;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3799,397,0 chrXI 70711 . C T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.7992;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=20.21;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3598,378,0 chrXI 70841 . A G 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=0.338;QD=19.52;ReadPosRankSum=1.712;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:3435,375,0 chrXI 70842 . C T 3596.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.32;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:3596,376,0 chrXI 71068 . T C 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=178;Dels=0.00;FS=6.074;HaplotypeScore=6.3692;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=0.188;QD=22.88;ReadPosRankSum=2.960;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:3,174:178:99:4072,435,0 chrXI 71199 . T C 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=-0.051;QD=20.14;ReadPosRankSum=1.707;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2772,303,0 chrXI 71203 . T C 2665 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=18.01;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2698,291,0 chrXI 71211 . C T 3176 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=19.60;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3209,339,0 chrXI 71541 . G A 4554.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.9120;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.10;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4554,481,0 chrXI 71930 . C T 3144 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=23.46;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3177,330,0 chrXI 71943 . C A 2983 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=22.26;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3016,318,0 chrXI 71963 . A G 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=-1.241;QD=20.35;ReadPosRankSum=1.655;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2760,300,0 chrXI 71964 . C T 2790 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=20.98;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2823,300,0 chrXI 72168 . G A 2763 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9976;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.93;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2796,303,0 chrXI 72189 . A G 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=3.748;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.839;QD=23.47;ReadPosRankSum=1.705;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3037,333,0 chrXI 72294 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.7109;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.90;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2964,321,0 chrXI 72330 . A G 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=133;Dels=0.00;FS=3.043;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=1.174;QD=22.29;ReadPosRankSum=2.394;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2998,327,0 chrXI 72431 . C T 4698.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=24.60;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4698,496,0 chrXI 72570 . A G 3781.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=22.78;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3781,408,0 chrXI 72594 . C T 3835.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=22.04;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3835,400,0 chrXI 72612 . T C 3477.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=19.32;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3477,375,0 chrXI 72614 . T C 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=4.381;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.201;QD=18.49;ReadPosRankSum=1.675;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3346,372,0 chrXI 72681 . T A 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=178;Dels=0.00;FS=4.130;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.768;QD=20.69;ReadPosRankSum=1.693;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3683,405,0 chrXI 73029 . T A 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.326;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=1.644;QD=22.47;ReadPosRankSum=1.622;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3527,378,0 chrXI 73132 . T A 5221.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.6853;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=25.22;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:5221,556,0 chrXI 73164 . A G 4642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=199;Dels=0.00;FS=3.032;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.820;QD=23.33;ReadPosRankSum=2.413;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4642,507,0 chrXI 73235 . A G 3531.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.7269;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.78;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3531,375,0 chrXI 73263 . T C 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=172;Dels=0.00;FS=6.082;HaplotypeScore=6.1246;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.580;QD=22.16;ReadPosRankSum=2.959;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:3,167:172:99:3811,420,0 chrXI 73279 . C T 4415.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.5738;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.36;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4415,460,0 chrXI 73320 . T C 4714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=219;Dels=0.00;FS=3.026;HaplotypeScore=10.3574;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-1.262;QD=21.53;ReadPosRankSum=2.392;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:2,214:219:99:4714,522,0 chrXI 73424 . A G 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=187;Dels=0.00;FS=9.688;HaplotypeScore=20.2480;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=2.219;QD=22.47;ReadPosRankSum=2.951;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:3,181:187:99:4202,453,0 chrXI 73701 . A G 4765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.089;QD=22.27;ReadPosRankSum=1.716;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4765,522,0 chrXI 74016 . A T 3045 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3078,327,0 chrXI 74103 . C A 2570 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=13.4533;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=21.78;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2603,273,0 chrXI 74498 . A C 2579 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.82;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2612,288,0 chrXI 74756 . C T 2673 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.24;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2706,282,0 chrXI 75746 . A G 4715.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=18.1719;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.67;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4715,522,0 chrXI 75787 . A G 4189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=197;Dels=0.00;FS=6.831;HaplotypeScore=11.3255;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-0.642;QD=21.26;ReadPosRankSum=2.412;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4189,456,0 chrXI 75807 . A G 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=3.516;HaplotypeScore=10.5134;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=1.051;QD=21.53;ReadPosRankSum=1.712;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3724,417,0 chrXI 76124 . A G 4759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=210;Dels=0.00;FS=4.430;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.332;QD=22.66;ReadPosRankSum=1.699;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:1,207:210:99:4759,534,0 chrXI 76187 . C T 4419.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.54;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4419,457,0 chrXI 76311 . C T 4989.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.70;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4989,514,0 chrXI 76914 . T C 4243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=181;Dels=0.00;FS=3.745;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.482;QD=23.44;ReadPosRankSum=1.713;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4243,456,0 chrXI 77051 . C T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.0327;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.36;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,142:146:99:3411,366,0 chrXI 77172 . C T 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.192;QD=24.16;ReadPosRankSum=1.127;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3101,333,0 chrXI 77759 . C T 4656.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=24.90;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4656,481,0 chrXI 77777 . A G 4097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=179;Dels=0.00;FS=3.261;HaplotypeScore=6.5666;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.642;QD=22.89;ReadPosRankSum=1.654;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4097,444,0 chrXI 77827 . A G 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.129;QD=22.68;ReadPosRankSum=1.703;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2800,297,0 chrXI 78581 . A G 2784 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.10;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2817,315,0 chrXI 78618 . C T 2687 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.20;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2720,300,0 chrXI 78639 . A G 2737 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2770,303,0 chrXI 79002 . G C 1918 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.01;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1951,207,0 chrXI 79100 . G A 2131 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.67;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2164,222,0 chrXI 79688 . G A 3036 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.48;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3069,330,0 chrXI 79772 . T C 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.549;QD=24.84;ReadPosRankSum=1.651;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4223,459,0 chrXI 79796 . G A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.21;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3853,417,0 chrXI 79829 . C G 2774 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.67;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2807,309,0 chrXI 79874 . C T 2485 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.54;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2518,264,0 chrXI 80353 . T C 4609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=194;Dels=0.00;FS=2.884;HaplotypeScore=18.7685;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.867;QD=23.76;ReadPosRankSum=2.399;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4609,495,0 chrXI 80724 . C T 4388.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.2495;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=23.09;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4388,460,0 chrXI 80731 . A G 4100.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.4630;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=22.04;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4100,444,0 chrXI 80751 . C A 3784.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=22.66;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3784,408,0 chrXI 80805 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=23.84;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3528,375,0 chrXI 80854 . A G 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=1.030;QD=19.41;ReadPosRankSum=1.709;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3002,339,0 chrXI 81244 . T C 4143.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.7902;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.51;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4143,465,0 chrXI 81518 . T C 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=156;Dels=0.00;FS=6.086;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-0.723;QD=20.35;ReadPosRankSum=2.878;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:3207,345,0 chrXI 81532 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.15;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3250,351,0 chrXI 83549 . A G 5334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.230;DP=234;Dels=0.00;FS=2.407;HaplotypeScore=11.8555;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-0.525;QD=22.79;ReadPosRankSum=3.379;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:4,230:234:99:5334,582,0 chrXI 83733 . A G 2583 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.38;MQ0=0;QD=21.17;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2616,291,0 chrXI 83745 . T G 2195 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;QD=20.14;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2228,249,0 chrXI 83746 . G A 2243 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.06;MQ0=0;QD=20.77;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2276,249,0 chrXI 83753 . A G 1986 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.79;MQ0=0;QD=18.74;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2019,219,0 chrXI 83792 . C G 1214 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=0;QD=13.05;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1247,138,0 chrXI 83795 . C T 1174 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.28;MQ0=0;QD=13.19;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1207,132,0 chrXI 83812 . A C 156.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.565;DP=92;Dels=0.00;FS=2.884;HaplotypeScore=2.7669;MLEAC=1;MLEAF=0.500;MQ=37.80;MQ0=0;MQRankSum=-0.224;QD=1.70;ReadPosRankSum=-0.075;SB=-1.610e+02 GT:AD:DP:GQ:PL 0/1:2,15:92:0:185,0,0 chrXI 83830 . T C 1710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.670;DP=113;Dels=0.00;FS=11.882;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=44.76;MQ0=0;MQRankSum=-0.777;QD=15.13;ReadPosRankSum=2.884;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:1743,186,0 chrXI 83924 . A C 2365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=105;Dels=0.01;FS=3.027;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=37.80;MQ0=0;MQRankSum=-1.882;QD=22.52;ReadPosRankSum=2.308;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2398,264,0 chrXI 83934 . C T 2206 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=33.27;MQ0=0;QD=23.72;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2239,234,0 chrXI 83983 . A G 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=30.92;MQ0=0;MQRankSum=-1.732;QD=20.60;ReadPosRankSum=1.678;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1372,153,0 chrXI 84009 . C T 1279 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.21;MQ0=0;QD=20.63;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1312,138,0 chrXI 84057 . G A 1259 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.04;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=33.54;MQ0=0;QD=22.09;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1292,138,0 chrXI 84078 . T C 1213 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=19.89;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1246,141,0 chrXI 84166 . G T 886 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.51;MQ0=0;QD=13.42;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:919,99,0 chrXI 84171 . C G 920 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.02;MQ0=0;QD=12.96;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:953,105,0 chrXI 84173 . A G 966 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.02;MQ0=0;QD=13.61;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:999,108,0 chrXI 84187 . T C 1245 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=0;QD=16.38;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1278,141,0 chrXI 84308 . A T 473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.130;DP=94;Dels=0.01;FS=2.099;HaplotypeScore=70.6526;MLEAC=2;MLEAF=1.00;MQ=43.22;MQ0=0;MQRankSum=-0.502;QD=5.03;ReadPosRankSum=2.850;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:4,89:93:57:506,57,0 chrXI 84350 . G A 2612 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;QD=22.52;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2645,279,0 chrXI 84384 . A G 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=3.086;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=0.358;QD=22.09;ReadPosRankSum=1.702;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2595,282,0 chrXI 84401 . G A 2624 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=22.43;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2657,291,0 chrXI 84589 . C T 3060 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.40;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3093,324,0 chrXI 84611 . A G 3299.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8385;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=22.44;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3299,354,0 chrXI 85003 . T C 3666.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.19;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3666,399,0 chrXI 85027 . A G 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=163;Dels=0.00;FS=2.793;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.098;QD=22.52;ReadPosRankSum=2.419;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3670,408,0 chrXI 85468 . C G 3472.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.1182;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.30;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3472,387,0 chrXI 85780 . C T 3118 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.93;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3151,339,0 chrXI 85801 . T C 2508 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.90;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2541,282,0 chrXI 85837 . T G 2757 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.73;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2790,309,0 chrXI 86050 . T A 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=3.547;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.692;QD=25.19;ReadPosRankSum=1.692;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2199,228,0 chrXI 86086 . A G 2210 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.56;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2243,246,0 chrXI 86206 . C T 2801 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=25.46;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2834,297,0 chrXI 86234 . C T 2851 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=24.16;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2884,303,0 chrXI 86327 . T C 2170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=95;Dels=0.00;FS=2.760;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-1.854;QD=22.84;ReadPosRankSum=2.398;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2203,243,0 chrXI 86346 . G A 2311 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.40;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2344,246,0 chrXI 86368 . T A 2477 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.30;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2510,261,0 chrXI 86449 . G A 3550.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.0270;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=24.65;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3550,370,0 chrXI 86471 . G A 3328.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.64;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3328,363,0 chrXI 86572 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=141;Dels=0.00;FS=2.902;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-1.760;QD=23.26;ReadPosRankSum=2.326;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:2,137:141:99:3280,357,0 chrXI 87002 . A G 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.743;DP=131;Dels=0.00;FS=2.580;HaplotypeScore=8.8461;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.102;QD=22.28;ReadPosRankSum=2.914;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:3,127:131:99:2952,318,0 chrXI 87119 . C T 3791.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.62;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3791,402,0 chrXI 87422 . T G 4192.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.0371;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.42;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4192,462,0 chrXI 87764 . A G 4770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.721;DP=205;Dels=0.00;FS=9.420;HaplotypeScore=12.1840;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.201;QD=23.27;ReadPosRankSum=2.966;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:3,202:205:99:4770,513,0 chrXI 87983 . A G 4092.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.99;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4092,453,0 chrXI 88322 . T C 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.879;QD=21.94;ReadPosRankSum=1.705;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2885,318,0 chrXI 88325 . T A 2963 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.7128;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=22.97;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2996,306,0 chrXI 88618 . C T 3004 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.47;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3037,327,0 chrXI 88890 . G A 3136 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=22.24;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3169,342,0 chrXI 88900 . G A 3012 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=9.6880;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=22.65;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3045,321,0 chrXI 89063 . A T 2596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;MQRankSum=-1.672;QD=22.38;ReadPosRankSum=1.702;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2629,285,0 chrXI 89072 . C T 2426 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=21.86;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2459,264,0 chrXI 89124 . A G 2131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=106;Dels=0.00;FS=2.636;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=-1.395;QD=20.10;ReadPosRankSum=2.403;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:2,103:106:99:2164,240,0 chrXI 89262 . G A 2230 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.1770;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=20.09;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2263,237,0 chrXI 89273 . A G 1758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.024;DP=108;Dels=0.00;FS=2.809;HaplotypeScore=88.4549;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;MQRankSum=-0.035;QD=16.28;ReadPosRankSum=0.403;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:2,105:108:99:1791,204,0 chrXI 89277 . A T 223.41 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.176;DP=122;Dels=0.00;FS=18.592;HaplotypeScore=98.0594;MLEAC=2;MLEAF=1.00;MQ=44.61;MQ0=0;MQRankSum=-1.106;QD=1.83;ReadPosRankSum=-4.518;SB=2.59 GT:AD:DP:GQ:PL 1/1:102,20:122:13:256,13,0 chrXI 89285 . T C 1459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.083;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=91.8040;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;MQRankSum=-0.939;QD=12.58;ReadPosRankSum=2.407;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:2,112:116:99:1492,168,0 chrXI 89332 . T C 4624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-0.747;QD=21.81;ReadPosRankSum=1.716;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:4624,498,0 chrXI 89367 . T C 5754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=260;Dels=0.00;FS=2.450;HaplotypeScore=1.9628;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.500;QD=22.13;ReadPosRankSum=2.973;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:3,257:260:99:5754,642,0 chrXI 89374 . A G 5817.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=6.6789;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.39;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,269:272:99:5817,648,0 chrXI 89534 . A T 6232.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.13;SB=-3.690e+03 GT:AD:DP:GQ:PL 1/1:0,295:295:99:6232,646,0 chrXI 89554 . C T 6532.01 PASS AC=2;AF=1.00;AN=2;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=19.98;SB=-3.731e+03 GT:AD:DP:GQ:PL 1/1:0,326:327:99:6532,720,0 chrXI 89713 . G A 4192.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.96;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,196:200:99:4192,453,0 chrXI 90100 . G A 4892.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=26.02;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4892,511,0 chrXI 90118 . G A 4089.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.23;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4089,447,0 chrXI 90349 . A G 4735.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=24.41;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4735,507,0 chrXI 90412 . A G 5064.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=18.9739;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=23.55;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5064,552,0 chrXI 90586 . T A 4474.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.1895;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;QD=20.81;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4474,472,0 chrXI 90595 . A G 3912.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=36.89;MQ0=0;QD=18.90;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3912,429,0 chrXI 90600 . G C 3766.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=36.01;MQ0=0;QD=17.76;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:3766,426,0 chrXI 90610 . C T 3741.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=0;QD=17.24;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:3741,411,0 chrXI 90634 . T C 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=209;Dels=0.00;FS=11.660;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=0;MQRankSum=-2.322;QD=15.82;ReadPosRankSum=2.966;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:3,206:209:99:3307,378,0 chrXI 90637 . C T 3494.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=39.08;MQ0=0;QD=16.72;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:3494,366,0 chrXI 90681 . C T 3653.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=18.64;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3653,402,0 chrXI 90751 . G A 4103.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=17.3195;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.31;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4103,441,0 chrXI 91192 . G A 4717.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=8.1487;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.51;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4717,522,0 chrXI 91201 . A C 5054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=241;Dels=0.00;FS=3.410;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=0.877;QD=20.97;ReadPosRankSum=1.689;SB=-2.959e+03 GT:AD:DP:GQ:PL 1/1:1,238:241:99:5054,558,0 chrXI 91339 . G A 5642.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=18.5338;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.41;SB=-3.261e+03 GT:AD:DP:GQ:PL 1/1:0,238:241:99:5642,583,0 chrXI 91402 . T C 5386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=230;Dels=0.00;FS=3.068;HaplotypeScore=15.0058;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.764;QD=23.42;ReadPosRankSum=1.687;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:1,228:230:99:5386,588,0 chrXI 91565 . C T 4097.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.5858;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.51;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4097,430,0 chrXI 91606 . A G 3306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.752;DP=158;Dels=0.00;FS=2.574;HaplotypeScore=15.8124;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.835;QD=20.92;ReadPosRankSum=2.956;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3306,360,0 chrXI 91796 . C T 2276 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.9079;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.14;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2309,261,0 chrXI 91825 . G C 2089 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.0657;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.89;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,96:100:99:2122,234,0 chrXI 92069 . G A 1904 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=22.40;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1937,219,0 chrXI 92145 . T C 2366 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=0;QD=22.32;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2399,264,0 chrXI 92158 . C T 2714 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=23.40;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2747,285,0 chrXI 92174 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=21.91;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2618,279,0 chrXI 92193 . C T 2324 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=21.72;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2357,255,0 chrXI 92251 . G T 1216 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.51;MQ0=0;QD=17.13;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1249,138,0 chrXI 92252 . T A 1239 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=17.70;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1272,138,0 chrXI 92272 . C A 425 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.04;FS=0.000;HaplotypeScore=62.4563;MLEAC=2;MLEAF=1.00;MQ=29.63;MQ0=0;QD=5.67;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:60:458,60,0 chrXI 92279 . A T 640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.362;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.9774;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;MQRankSum=0.388;QD=7.90;ReadPosRankSum=1.596;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:6,75:81:87:673,87,0 chrXI 92313 . T C 806 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.05;MQ0=0;QD=9.60;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:93:839,93,0 chrXI 92330 . G T 1096 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.99;MQ0=0;QD=11.42;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1129,120,0 chrXI 92358 . A G 1417 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=0;QD=12.65;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1450,168,0 chrXI 92380 . T C 1449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;MQRankSum=-1.373;QD=13.67;ReadPosRankSum=1.699;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1482,165,0 chrXI 92395 . T C 1906 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;QD=15.88;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1939,219,0 chrXI 92422 . C T 1563 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=15.32;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1596,171,0 chrXI 92424 . C T 1589 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;QD=15.73;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1622,177,0 chrXI 92441 . G T 1611 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=42.01;MQ0=0;QD=17.51;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1644,180,0 chrXI 92500 . T G 1473 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;QD=17.96;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1506,168,0 chrXI 92507 . G T 1567 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=17.03;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1600,174,0 chrXI 92653 . G A 1429 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=69.3036;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;QD=16.81;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1462,159,0 chrXI 92948 . A T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.90;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3366,363,0 chrXI 93041 . G A 5247.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.23;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5247,556,0 chrXI 93302 . T G 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=199;Dels=0.00;FS=5.809;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=-0.311;QD=20.02;ReadPosRankSum=2.883;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:3,194:199:99:3983,432,0 chrXI 93305 . G A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=19.02;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,188:192:99:3651,396,0 chrXI 93349 . G T 3820.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=17.44;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:3820,402,0 chrXI 93352 . G A 3726.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=17.09;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:3726,396,0 chrXI 93445 . C T 4770.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=18.4611;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.63;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:0,239:243:99:4770,519,0 chrXI 93562 . C T 3769.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=22.57;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3769,414,0 chrXI 93575 . C T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=22.57;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3295,348,0 chrXI 93852 . A G 2864 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.06;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2897,330,0 chrXI 94179 . T C 2214 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2247,240,0 chrXI 94278 . C G 1727 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1760,192,0 chrXI 94372 . C T 2064 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.57;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2097,225,0 chrXI 94473 . T C 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.1265;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.269;QD=24.29;ReadPosRankSum=1.629;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3279,360,0 chrXI 94945 . C A 4410.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.21;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4410,477,0 chrXI 94985 . C T 4417.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.3451;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4417,463,0 chrXI 95374 . G A 4147.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4147,441,0 chrXI 95806 . G A 7528.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=17.0234;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.54;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,334:334:99:7528,831,0 chrXI 96187 . C T 3578.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3578,384,0 chrXI 96250 . G A 2524 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2557,270,0 chrXI 96552 . C T 2289 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2322,249,0 chrXI 97113 . T C 2765 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.43;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2798,312,0 chrXI 97362 . C T 3684.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=25.06;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3684,393,0 chrXI 97380 . C T 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.7464;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.487;QD=25.34;ReadPosRankSum=-1.506;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3877,389,0 chrXI 97410 . C T 3485.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.37;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3485,364,0 chrXI 97680 . T C 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=3.432;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.499;QD=21.73;ReadPosRankSum=1.616;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2641,297,0 chrXI 97716 . C T 3172 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.03;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3205,348,0 chrXI 97758 . G A 3900.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.2893;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.08;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3900,420,0 chrXI 97882 . T G 2788 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.12;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2821,309,0 chrXI 97897 . G A 2826 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.25;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2859,309,0 chrXI 97953 . G A 3673.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=23.39;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3673,384,0 chrXI 98109 . C T 3894.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=21.51;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3894,423,0 chrXI 98162 . T A 2498 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=19.83;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2531,267,0 chrXI 98172 . C T 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.5455;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;MQRankSum=1.478;QD=16.62;ReadPosRankSum=1.669;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:1,111:114:99:1928,203,0 chrXI 98175 . G C 1931 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.9681;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=18.39;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1964,222,0 chrXI 98234 . G C 1872 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=18.91;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1905,207,0 chrXI 98240 . G A 1902 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=20.23;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1935,204,0 chrXI 98259 . A G 2332 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=21.39;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2365,261,0 chrXI 98324 . A G 1815 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=21.10;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1848,207,0 chrXI 98325 . C T 1902 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=22.12;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1935,204,0 chrXI 98422 . A G 1873 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=26.76;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1906,201,0 chrXI 98452 . C T 2067 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=24.03;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2100,219,0 chrXI 98597 . T A 3147 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=21.55;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3180,339,0 chrXI 98608 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=20.45;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3142,330,0 chrXI 98619 . G T 2772 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=18.73;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2805,303,0 chrXI 98634 . T A 2875 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=18.43;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2908,306,0 chrXI 98658 . T C 2587 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=16.91;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2620,285,0 chrXI 98707 . A C 3274.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.85;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3274,363,0 chrXI 98834 . T G 4298.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.2310;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.66;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4298,486,0 chrXI 99224 . T C 6689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=18.7188;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.926;QD=22.08;ReadPosRankSum=1.651;SB=-3.020e+03 GT:AD:DP:GQ:PL 1/1:1,300:303:99:6689,741,0 chrXI 99633 . A G 4498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=224;Dels=0.00;FS=2.575;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=0.275;QD=20.08;ReadPosRankSum=2.888;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:3,220:224:99:4498,504,0 chrXI 99646 . C T 4374.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.53;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4374,474,0 chrXI 100443 . C T 1236 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=21.31;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1269,135,0 chrXI 100445 . A G 1160 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=20.00;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1193,129,0 chrXI 100670 . T C 2386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=109;Dels=0.00;FS=2.430;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.523;QD=21.89;ReadPosRankSum=2.879;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:3,105:109:99:2419,258,0 chrXI 101183 . A C 3132 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.74;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3165,357,0 chrXI 101384 . C T 5259.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.56;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5259,544,0 chrXI 101564 . A G 5007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=233;Dels=0.00;FS=2.966;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.164;QD=21.49;ReadPosRankSum=2.428;SB=-2.805e+03 GT:AD:DP:GQ:PL 1/1:2,230:233:99:5007,543,0 chrXI 102604 . G A 3834.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.69;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3834,411,0 chrXI 103493 . C T 4799.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.5058;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4799,522,0 chrXI 104032 . C T 4463.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.74;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4463,469,0 chrXI 105032 . T C 4719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=3.076;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.302;QD=23.48;ReadPosRankSum=1.663;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4719,531,0 chrXI 105788 . C T 3652.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.87;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3652,384,0 chrXI 106700 . C T 2875 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=25.22;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2908,312,0 chrXI 106811 . G A 2170 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.11;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2203,231,0 chrXI 106986 . A C 1353 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=60.5228;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=17.35;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1386,150,0 chrXI 107330 . A G 3665.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.5861;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.11;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3665,393,0 chrXI 107762 . T A 4224.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.8969;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.73;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4224,453,0 chrXI 107951 . A T 6860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=291;Dels=0.00;FS=5.004;HaplotypeScore=27.7209;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.842;QD=23.57;ReadPosRankSum=1.672;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:1,289:290:99:6860,739,0 chrXI 107990 . G A 6601.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=21.50;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,306:307:99:6601,712,0 chrXI 107994 . A G 6336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=307;Dels=0.00;FS=4.931;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-1.221;QD=20.64;ReadPosRankSum=1.664;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:1,304:307:99:6336,711,0 chrXI 108164 . G A 6506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.315;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=2.7537;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-0.149;QD=22.28;ReadPosRankSum=-0.018;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:1,290:292:99:6506,667,0 chrXI 108169 . G C 6227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=295;Dels=0.00;FS=4.924;HaplotypeScore=5.1197;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=-0.438;QD=21.11;ReadPosRankSum=1.636;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:1,288:295:99:6227,648,0 chrXI 108272 . C T 5519.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=13.0368;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.09;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5519,574,0 chrXI 108782 . T C 2725 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2758,309,0 chrXI 109080 . G C 2410 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.13;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,120:126:99:2443,264,0 chrXI 109425 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3303,348,0 chrXI 109640 . G A 2779 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=24.81;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2812,297,0 chrXI 109778 . G A 2084 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.6155;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=19.30;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2117,222,0 chrXI 109806 . T C 1824 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.80;MQ0=0;QD=16.89;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1857,201,0 chrXI 109823 . T C 1746 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.39;MQ0=0;QD=15.18;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1779,189,0 chrXI 109825 . T C 1823 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.99;MQ0=0;QD=15.58;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1856,201,0 chrXI 109838 . C G 1537 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=91.8273;MLEAC=2;MLEAF=1.00;MQ=34.13;MQ0=0;QD=12.70;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1570,177,0 chrXI 109873 . T A 2151 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=16.05;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2184,234,0 chrXI 110327 . C T 1981 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.90;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2014,204,0 chrXI 110492 . A G 2805 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2838,303,0 chrXI 110832 . G C 3175 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.20;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3208,345,0 chrXI 110926 . C T 3762.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3762,402,0 chrXI 111552 . C T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.0746;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=21.72;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3606,381,0 chrXI 111555 . T C 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.9645;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-1.386;QD=20.46;ReadPosRankSum=1.712;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3478,375,0 chrXI 111787 . T G 4201.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=189;Dels=0.00;FS=4.347;HaplotypeScore=12.8429;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.272;QD=22.23;ReadPosRankSum=1.676;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,184:189:99:4201,456,0 chrXI 112117 . G A 2735 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2768,282,0 chrXI 112392 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.9567;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.91;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2735,282,0 chrXI 112728 . C A 3039 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.0652;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.12;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3072,315,0 chrXI 112929 . A T 1765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;MQRankSum=0.355;QD=22.34;ReadPosRankSum=1.688;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1798,189,0 chrXI 113383 . G C 3325.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.00;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3325,363,0 chrXI 114544 . G T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.19;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3942,417,0 chrXI 114676 . T C 2190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=97;Dels=0.00;FS=9.076;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.304;QD=22.58;ReadPosRankSum=1.625;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2223,243,0 chrXI 114716 . A G 1311 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1344,147,0 chrXI 114988 . T C 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.502;QD=23.98;ReadPosRankSum=1.603;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2599,282,0 chrXI 116686 . T C 5335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=228;Dels=0.00;FS=11.314;HaplotypeScore=15.2586;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.799;QD=23.40;ReadPosRankSum=2.880;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:3,222:228:99:5335,582,0 chrXI 116904 . C T 4153.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.0171;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4153,456,0 chrXI 117207 . C T 3482.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.7707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3482,369,0 chrXI 118109 . T C 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.602;DP=135;Dels=0.00;FS=9.130;HaplotypeScore=8.2946;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.406;QD=20.58;ReadPosRankSum=1.068;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:3,131:135:99:2811,287,0 chrXI 118487 . C A 4209.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.20;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4209,436,0 chrXI 119310 . T C 6775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=291;Dels=0.00;FS=5.976;HaplotypeScore=10.7078;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.872;QD=23.28;ReadPosRankSum=2.948;SB=-3.274e+03 GT:AD:DP:GQ:PL 1/1:3,287:291:99:6775,759,0 chrXI 119339 . T C 5992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.241;DP=263;Dels=0.00;FS=8.625;HaplotypeScore=14.4197;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.512;QD=22.78;ReadPosRankSum=3.367;SB=-2.965e+03 GT:AD:DP:GQ:PL 1/1:4,258:263:99:5992,657,0 chrXI 120268 . C T 4446.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.7155;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.16;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4446,480,0 chrXI 120452 . G A 2857 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.2159;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.23;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2890,306,0 chrXI 120476 . C T 2610 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.57;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2643,273,0 chrXI 120797 . A G 4307.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.0325;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4307,474,0 chrXI 121106 . A T 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=109;Dels=0.00;FS=2.918;HaplotypeScore=7.8389;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.208;QD=22.27;ReadPosRankSum=2.405;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2460,258,0 chrXI 121247 . T C 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=147;Dels=0.00;FS=5.645;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.290;QD=24.39;ReadPosRankSum=2.924;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:3,143:147:99:3585,387,0 chrXI 122945 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.1408;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.67;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3088,321,0 chrXI 124424 . T C 2542 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.11;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2575,288,0 chrXI 125651 . T A 3075 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3108,324,0 chrXI 128474 . G A 4869.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.47;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4869,522,0 chrXI 129862 . G A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.7224;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.77;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3392,360,0 chrXI 130226 . C T 4246.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.58;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4246,442,0 chrXI 130383 . T G 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.957;QD=23.24;ReadPosRankSum=1.684;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3346,366,0 chrXI 130805 . G A 4178.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3158;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4178,439,0 chrXI 131017 . T C 3970.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.69;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3970,435,0 chrXI 131399 . T C 2784 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2817,315,0 chrXI 131539 . A G 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=147;Dels=0.00;FS=11.372;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.116;QD=23.10;ReadPosRankSum=2.925;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3395,369,0 chrXI 131978 . A G 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.686;DP=157;Dels=0.00;FS=6.091;HaplotypeScore=16.5167;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.006;QD=23.07;ReadPosRankSum=2.955;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3622,396,0 chrXI 132504 . A G 2817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=121;Dels=0.00;FS=3.010;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.010;QD=23.28;ReadPosRankSum=2.348;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2850,312,0 chrXI 132600 . G A 4390.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.8428;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.39;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4390,474,0 chrXI 132719 . T C 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-0.536;QD=19.04;ReadPosRankSum=1.691;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3231,363,0 chrXI 132731 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.7195;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.26;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3428,372,0 chrXI 132787 . T C 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.106;QD=17.56;ReadPosRankSum=1.714;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:3441,372,0 chrXI 132965 . C G 3989.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.5763;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.46;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,191:195:99:3989,447,0 chrXI 133272 . G A 3745.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.70;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3745,391,0 chrXI 133472 . C A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.22;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3467,375,0 chrXI 133596 . C G 2881 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.50;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2914,318,0 chrXI 133597 . A T 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.000;QD=21.40;ReadPosRankSum=1.706;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2901,315,0 chrXI 134257 . G A 3183 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.75;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3216,333,0 chrXI 134317 . T C 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=109;Dels=0.00;FS=4.576;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.810;QD=20.13;ReadPosRankSum=1.700;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2227,249,0 chrXI 134323 . C T 2236 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.30;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2269,252,0 chrXI 134374 . T C 2280 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.92;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2313,258,0 chrXI 134468 . T A 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.375;DP=105;Dels=0.05;FS=7.442;HaplotypeScore=27.2973;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.727;QD=12.75;ReadPosRankSum=-0.407;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:5,95:100:93:1372,93,0 chrXI 135031 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3598,390,0 chrXI 135112 . C T 3836.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.5829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3836,405,0 chrXI 135151 . G A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8911;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.07;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4067,424,0 chrXI 135475 . T G 3713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.619;DP=167;Dels=0.00;FS=16.704;HaplotypeScore=12.6466;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.105;QD=22.23;ReadPosRankSum=3.798;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:5,161:167:99:3713,414,0 chrXI 135691 . C G 3405.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.11;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3405,366,0 chrXI 136030 . G A 1910 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=22.47;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1943,201,0 chrXI 136140 . T A 638 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.94;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:72:671,72,0 chrXI 136273 . T A 2662 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.8670;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=26.10;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2695,282,0 chrXI 136651 . C T 2354 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=21.21;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2387,255,0 chrXI 136652 . A T 2269 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.63;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2302,240,0 chrXI 137138 . G A 2232 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2265,237,0 chrXI 137449 . G A 1815 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1848,198,0 chrXI 139040 . G A 3221.02 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3254,336,0 chrXI 139235 . T G 2161 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.1379;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.51;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2194,234,0 chrXI 139420 . A G 2650 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.09;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2683,291,0 chrXI 139969 . G T 4960.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.8569;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.07;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4960,532,0 chrXI 140425 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.3578;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.810;QD=22.51;ReadPosRankSum=1.691;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3826,423,0 chrXI 140593 . G A 3441.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.93;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3441,363,0 chrXI 140833 . T G 3305.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=16.1101;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.11;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3305,363,0 chrXI 141404 . A G 1754 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.20;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1787,195,0 chrXI 141461 . C G 1678 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.74;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1711,186,0 chrXI 142268 . A T 4977.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=23.2419;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.592;QD=21.18;ReadPosRankSum=1.657;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:4977,526,0 chrXI 142274 . A T 69.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.291;DP=234;Dels=0.00;FS=15.479;HaplotypeScore=31.4406;MLEAC=1;MLEAF=0.500;MQ=58.48;MQ0=0;MQRankSum=-1.228;QD=0.29;ReadPosRankSum=-1.765;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:187,46:234:99:99,0,3515 chrXI 142275 . G T 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.670;DP=232;Dels=0.00;FS=9.195;HaplotypeScore=31.4406;MLEAC=1;MLEAF=0.500;MQ=58.46;MQ0=0;MQRankSum=-2.110;QD=0.09;ReadPosRankSum=-0.538;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:194,38:232:50:50,0,3524 chrXI 142358 . A G 4378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.562;DP=201;Dels=0.00;FS=8.384;HaplotypeScore=8.8545;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=1.343;QD=21.78;ReadPosRankSum=4.525;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:8,193:201:99:4378,474,0 chrXI 142382 . A T 1361.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;DP=138;Dels=0.00;FS=2.325;HaplotypeScore=14.2724;MLEAC=1;MLEAF=0.500;MQ=54.16;MQ0=0;MQRankSum=-2.081;QD=9.86;ReadPosRankSum=0.809;SB=-7.870e+02 GT:AD:DP:GQ:PL 0/1:45,91:138:99:1391,0,696 chrXI 142409 . A G 381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.408;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=4.2194;MLEAC=2;MLEAF=1.00;MQ=45.34;MQ0=0;MQRankSum=-0.433;QD=11.91;ReadPosRankSum=1.625;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:45:414,45,0 chrXI 142472 . G A 149.06 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=1;QD=7.85;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,18:19:21:182,21,0 chrXI 142511 . A T 373.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.175;DP=129;Dels=0.00;FS=6.400;HaplotypeScore=19.2233;MLEAC=1;MLEAF=0.500;MQ=54.02;MQ0=1;MQRankSum=2.909;QD=2.89;ReadPosRankSum=1.291;SB=-1.740e+02 GT:AD:DP:GQ:PL 0/1:92,37:129:99:403,0,1528 chrXI 142562 . A G 92.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.550;DP=210;Dels=0.00;FS=23.811;HaplotypeScore=14.1415;MLEAC=1;MLEAF=0.500;MQ=56.62;MQ0=0;MQRankSum=0.065;QD=0.44;ReadPosRankSum=-0.155;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:170,40:210:99:122,0,3423 chrXI 142700 . A T 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=136;Dels=0.00;FS=2.727;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=1;MQRankSum=-1.388;QD=20.74;ReadPosRankSum=2.263;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2854,309,0 chrXI 142962 . C T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=26.51;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3446,357,0 chrXI 143002 . T C 2676 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.01;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2709,294,0 chrXI 143177 . G A 3716.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.6883;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.67;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3716,393,0 chrXI 143668 . C T 4426.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.2429;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.45;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4426,469,0 chrXI 143713 . C T 4982.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.7632;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.91;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4982,514,0 chrXI 143731 . A T 4497.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.6584;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.92;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4497,478,0 chrXI 143865 . T C 4564.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.65;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4564,492,0 chrXI 144069 . A G 3631.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.6659;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.55;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3631,399,0 chrXI 144688 . T C 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.523;DP=260;Dels=0.00;FS=5.225;HaplotypeScore=56.9298;MLEAC=1;MLEAF=0.500;MQ=46.40;MQ0=0;MQRankSum=0.793;QD=0.14;ReadPosRankSum=-5.979;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:197,61:260:67:67,0,3455 chrXI 144700 . C T 3391.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.513;DP=328;Dels=0.00;FS=22.203;HaplotypeScore=76.6266;MLEAC=1;MLEAF=0.500;MQ=46.55;MQ0=0;MQRankSum=-0.679;QD=10.34;ReadPosRankSum=3.509;SB=-2.189e+03 GT:AD:DP:GQ:PL 0/1:110,217:328:99:3391,0,1039 chrXI 144718 . T C 2094.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.626;DP=436;Dels=0.00;FS=48.038;HaplotypeScore=170.6556;MLEAC=1;MLEAF=0.500;MQ=46.61;MQ0=0;MQRankSum=-2.089;QD=4.80;ReadPosRankSum=1.592;SB=-1.327e+03 GT:AD:DP:GQ:PL 0/1:273,162:436:99:2124,0,3555 chrXI 144790 . C T 1298.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.249;DP=300;Dels=0.01;FS=27.062;HaplotypeScore=135.6204;MLEAC=1;MLEAF=0.500;MQ=46.24;MQ0=5;MQRankSum=-5.159;QD=4.33;ReadPosRankSum=-0.553;SB=-9.720e+02 GT:AD:DP:GQ:PL 0/1:165,132:298:99:1328,0,2321 chrXI 144796 . T C 938.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.151;DP=281;Dels=0.01;FS=51.223;HaplotypeScore=175.0524;MLEAC=1;MLEAF=0.500;MQ=44.77;MQ0=7;MQRankSum=-4.461;QD=3.34;ReadPosRankSum=-2.394;SB=-7.000e+02 GT:AD:DP:GQ:PL 0/1:144,134:278:99:968,0,2060 chrXI 144808 . C T 1023.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.787;DP=226;Dels=0.00;FS=34.950;HaplotypeScore=76.1374;MLEAC=1;MLEAF=0.500;MQ=44.38;MQ0=7;MQRankSum=2.788;QD=4.53;ReadPosRankSum=-0.099;SB=-5.770e+02 GT:AD:DP:GQ:PL 0/1:129,95:226:99:1053,0,1204 chrXI 144826 . T C 59.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.569;DP=249;Dels=0.00;FS=99.417;HaplotypeScore=55.1982;MLEAC=1;MLEAF=0.500;MQ=42.97;MQ0=7;MQRankSum=-2.262;QD=0.24;ReadPosRankSum=-5.039;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:213,36:249:89:89,0,2174 chrXI 144856 . A T 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.080;DP=374;Dels=0.00;FS=95.609;HaplotypeScore=105.8778;MLEAC=1;MLEAF=0.500;MQ=42.84;MQ0=6;MQRankSum=-6.161;QD=0.08;ReadPosRankSum=-0.171;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:299,74:374:60:60,0,3588 chrXI 144857 . A T 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.295;DP=373;Dels=0.00;FS=91.687;HaplotypeScore=104.1522;MLEAC=1;MLEAF=0.500;MQ=42.88;MQ0=6;MQRankSum=-7.486;QD=0.08;ReadPosRankSum=0.407;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:299,74:373:60:60,0,3703 chrXI 144862 . T C 74.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.559;DP=398;Dels=0.00;FS=9.447;HaplotypeScore=30.0084;MLEAC=1;MLEAF=0.500;MQ=42.64;MQ0=6;MQRankSum=-9.955;QD=0.19;ReadPosRankSum=-1.450;SB=-3.160e+02 GT:AD:DP:GQ:PL 0/1:287,110:398:99:104,0,3758 chrXI 144865 . T C 71.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.550;DP=411;Dels=0.00;FS=32.411;HaplotypeScore=26.6477;MLEAC=1;MLEAF=0.500;MQ=42.70;MQ0=6;MQRankSum=-7.366;QD=0.17;ReadPosRankSum=-1.044;SB=-3.160e+02 GT:AD:DP:GQ:PL 0/1:306,104:411:99:101,0,3817 chrXI 144889 . T C 1680.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.274;DP=419;Dels=0.00;FS=46.808;HaplotypeScore=31.7038;MLEAC=1;MLEAF=0.500;MQ=45.47;MQ0=0;MQRankSum=-3.146;QD=4.01;ReadPosRankSum=-2.029;SB=-2.192e+03 GT:AD:DP:GQ:PL 0/1:181,235:419:99:1710,0,2331 chrXI 144916 . C T 3058.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.197;DP=368;Dels=0.00;FS=69.401;HaplotypeScore=60.8397;MLEAC=1;MLEAF=0.500;MQ=47.98;MQ0=0;MQRankSum=1.410;QD=8.31;ReadPosRankSum=6.203;SB=-2.795e+03 GT:AD:DP:GQ:PL 0/1:107,261:368:99:3088,0,947 chrXI 144928 . G A 331.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.612;DP=333;Dels=0.00;FS=16.290;HaplotypeScore=68.4009;MLEAC=1;MLEAF=0.500;MQ=49.73;MQ0=0;MQRankSum=-6.502;QD=0.99;ReadPosRankSum=-11.054;SB=-1.590e+02 GT:AD:DP:GQ:PL 0/1:246,87:333:99:361,0,3356 chrXI 146650 . A G 4388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=186;Dels=0.00;FS=2.579;HaplotypeScore=15.7689;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.887;QD=23.59;ReadPosRankSum=2.941;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:4388,477,0 chrXI 147072 . T C 3483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=3.634;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.121;QD=22.04;ReadPosRankSum=1.600;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3483,375,0 chrXI 147232 . T C 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=143;Dels=0.00;FS=6.490;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.748;QD=24.11;ReadPosRankSum=2.415;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3448,375,0 chrXI 147476 . G C 3587.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.29;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3587,396,0 chrXI 148157 . T C 3359.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=24.52;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3359,366,0 chrXI 148801 . T C 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.096;QD=22.98;ReadPosRankSum=1.669;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2538,288,0 chrXI 148894 . T C 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=116;Dels=0.00;FS=2.984;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.007;QD=22.81;ReadPosRankSum=2.407;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2679,285,0 chrXI 149332 . G T 4422.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4422,460,0 chrXI 149388 . A C 4286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=187;Dels=0.00;FS=10.051;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.876;QD=22.92;ReadPosRankSum=2.909;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:4286,471,0 chrXI 149575 . G T 4113.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.7020;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.91;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4113,435,0 chrXI 150247 . A T 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=140;Dels=0.00;FS=5.449;HaplotypeScore=12.2481;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.540;QD=21.89;ReadPosRankSum=2.905;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:3097,330,0 chrXI 150307 . G A 3186 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.89;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3219,345,0 chrXI 150466 . T C 3052 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.61;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3085,330,0 chrXI 150646 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.8032;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3451,355,0 chrXI 150866 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3260,339,0 chrXI 150922 . G T 3862.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.8210;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.24;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3862,408,0 chrXI 151229 . G T 2646 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.20;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2679,276,0 chrXI 151386 . A C 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=3.460;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.767;QD=23.54;ReadPosRankSum=1.619;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2928,324,0 chrXI 151420 . A T 3063 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.31;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3096,333,0 chrXI 151505 . G C 3404.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.48;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3404,366,0 chrXI 151684 . T C 3599.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.0096;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.82;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3599,390,0 chrXI 151866 . G T 3896.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.66;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3896,409,0 chrXI 152140 . G A 3470.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.83;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3470,369,0 chrXI 152167 . T C 3462.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.64;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3462,375,0 chrXI 152290 . G A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=22.05;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3616,376,0 chrXI 152294 . A G 3286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=159;Dels=0.00;FS=2.988;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-1.105;QD=20.67;ReadPosRankSum=2.388;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3286,357,0 chrXI 152351 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.63;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3056,327,0 chrXI 152571 . T G 3299.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.38;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3299,351,0 chrXI 152632 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=25.18;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3500,364,0 chrXI 152739 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.70;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2689,285,0 chrXI 152904 . G A 2286 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.09;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2319,243,0 chrXI 153028 . T C 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=106;Dels=0.00;FS=2.949;HaplotypeScore=9.4666;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.361;QD=24.10;ReadPosRankSum=2.402;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:2,102:106:99:2588,282,0 chrXI 153052 . C T 2273 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=25.83;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2306,237,0 chrXI 154732 . C T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.5368;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.46;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3796,420,0 chrXI 154820 . A G 4440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.5374;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.446;QD=21.98;ReadPosRankSum=1.698;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4440,483,0 chrXI 154842 . T C 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=194;Dels=0.00;FS=8.894;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.247;QD=20.30;ReadPosRankSum=2.399;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:3939,438,0 chrXI 155080 . T C 3853.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.93;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3853,432,0 chrXI 155092 . G A 4161.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.25;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4161,424,0 chrXI 155185 . A T 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6663;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.076;QD=24.09;ReadPosRankSum=1.681;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3276,342,0 chrXI 155453 . C T 3592.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3592,381,0 chrXI 155574 . G C 3390.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=23.71;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3390,369,0 chrXI 155667 . T A 4082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=163;Dels=0.00;FS=2.965;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.219;QD=25.04;ReadPosRankSum=2.419;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:4082,427,0 chrXI 155787 . A T 3617.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.04;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3617,390,0 chrXI 155819 . C T 3515.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.47;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3515,363,0 chrXI 156285 . G A 4825.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.5925;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.65;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4825,508,0 chrXI 156351 . G T 5413.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=13.6863;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5413,577,0 chrXI 156552 . A T 4682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=202;Dels=0.00;FS=3.593;HaplotypeScore=16.2084;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.252;QD=23.18;ReadPosRankSum=1.680;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4682,519,0 chrXI 156730 . A G 4648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.3947;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.268;QD=23.96;ReadPosRankSum=1.661;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4648,501,0 chrXI 156795 . C T 4490.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.7980;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.54;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4490,469,0 chrXI 156873 . T C 4507.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.4922;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.60;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4507,489,0 chrXI 157203 . A G 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=166;Dels=0.00;FS=3.515;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.845;QD=24.11;ReadPosRankSum=1.711;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:4002,432,0 chrXI 157764 . T C 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=141;Dels=0.00;FS=6.700;HaplotypeScore=8.6006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.553;QD=21.91;ReadPosRankSum=2.309;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3122,351,0 chrXI 157912 . T C 4204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=176;Dels=0.00;FS=5.927;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.303;QD=23.89;ReadPosRankSum=2.960;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:4204,456,0 chrXI 158228 . A T 2539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.962;QD=23.29;ReadPosRankSum=1.700;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2572,270,0 chrXI 158497 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=21.85;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3605,378,0 chrXI 158515 . A G 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=3.376;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;MQRankSum=0.075;QD=19.08;ReadPosRankSum=1.711;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3105,345,0 chrXI 158549 . T G 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;MQRankSum=-0.306;QD=15.50;ReadPosRankSum=1.681;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2141,240,0 chrXI 158711 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=25.51;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3826,411,0 chrXI 158757 . A G 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=142;Dels=0.00;FS=6.306;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=0.887;QD=25.04;ReadPosRankSum=2.397;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:2,138:142:99:3555,381,0 chrXI 159405 . A G 1744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=75;Dels=0.00;FS=3.436;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.624;QD=23.25;ReadPosRankSum=1.686;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1777,189,0 chrXI 159489 . G A 2429 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=20.58;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2462,267,0 chrXI 159495 . A G 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=115;Dels=0.00;FS=11.628;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.817;QD=20.52;ReadPosRankSum=2.406;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2393,255,0 chrXI 159705 . G A 4001.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.6768;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.26;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4001,415,0 chrXI 159741 . G A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0885;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.66;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3880,414,0 chrXI 159923 . T C 3127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=158;Dels=0.00;FS=3.910;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.235;QD=19.79;ReadPosRankSum=1.687;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,154:158:99:3160,336,0 chrXI 160401 . T C 2659 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2692,297,0 chrXI 160661 . T C 4390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.414;QD=23.86;ReadPosRankSum=1.694;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4390,471,0 chrXI 160799 . A G 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.307;QD=22.04;ReadPosRankSum=2.395;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3989,435,0 chrXI 161178 . T C 3476.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6414;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.81;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3476,378,0 chrXI 161493 . G C 3653.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.35;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3653,399,0 chrXI 161567 . G A 3958.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.43;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3958,426,0 chrXI 161769 . C T 4554.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.6231;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.89;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4554,475,0 chrXI 162073 . T C 3594.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3594,402,0 chrXI 162420 . A G 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=4.705;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-0.053;QD=22.55;ReadPosRankSum=1.705;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2964,318,0 chrXI 162583 . G A 2216 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=19.96;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2249,234,0 chrXI 162589 . T G 1984 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=18.37;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2017,222,0 chrXI 162595 . A G 2049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=0.458;QD=19.33;ReadPosRankSum=1.699;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2082,222,0 chrXI 162828 . G A 2844 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=26.58;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2877,303,0 chrXI 162874 . C T 3319.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.53;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3319,357,0 chrXI 162979 . G T 3718.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.5965;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.53;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3718,393,0 chrXI 163173 . C T 4454.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.74;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4454,469,0 chrXI 163260 . A T 5278.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=24.32;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5278,562,0 chrXI 163447 . A G 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=1.083;QD=21.73;ReadPosRankSum=2.930;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3434,381,0 chrXI 163461 . G A 3644.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.63;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3644,390,0 chrXI 163473 . G A 3694.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.80;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3694,385,0 chrXI 164020 . G T 5685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=239;Dels=0.00;FS=4.007;HaplotypeScore=10.5807;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.181;QD=23.79;ReadPosRankSum=1.718;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:5685,610,0 chrXI 164565 . G A 3369.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.23;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3369,360,0 chrXI 164899 . C T 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=20.6168;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=0.512;QD=17.25;ReadPosRankSum=-0.316;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2776,291,0 chrXI 165249 . C T 5296.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=8.6112;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.18;SB=-3.040e+03 GT:AD:DP:GQ:PL 1/1:0,246:250:99:5296,565,0 chrXI 165256 . G A 5070.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=20.78;SB=-3.074e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5070,532,0 chrXI 165315 . A G 4855.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=13.0144;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.23;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:4855,528,0 chrXI 165363 . A T 5718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=19.1861;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.529;QD=21.91;ReadPosRankSum=1.691;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:1,260:261:99:5718,589,0 chrXI 165754 . G A 5013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=15.8516;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.992;QD=22.38;ReadPosRankSum=-1.354;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:1,220:224:99:5013,526,0 chrXI 166103 . T C 6128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=17.7427;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.883;QD=23.30;ReadPosRankSum=1.679;SB=-3.089e+03 GT:AD:DP:GQ:PL 1/1:1,260:263:99:6128,658,0 chrXI 166469 . T A 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=3.378;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-1.095;QD=22.65;ReadPosRankSum=1.713;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4190,444,0 chrXI 166502 . G A 3670.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.1639;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=21.34;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3670,384,0 chrXI 166519 . T A 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.625;DP=166;Dels=0.00;FS=8.028;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=-0.067;QD=18.27;ReadPosRankSum=3.587;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:5,161:166:99:3065,339,0 chrXI 166543 . C T 3638.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=21.65;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3638,387,0 chrXI 166672 . T C 4594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=2.7537;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=-0.493;QD=21.07;ReadPosRankSum=1.653;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4594,504,0 chrXI 166681 . G A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=18.53;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:4206,468,0 chrXI 166687 . A G 4612.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=20.50;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4612,498,0 chrXI 166774 . C T 5212.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.16;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5212,558,0 chrXI 167254 . T C 3552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=3.419;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=0.197;QD=21.02;ReadPosRankSum=1.711;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3552,390,0 chrXI 167261 . A G 3377.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.72;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3377,375,0 chrXI 167518 . A T 179.03 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=8.53;SB=-1.279e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:212,24,0 chrXI 167684 . A T 1993 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.22;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2026,216,0 chrXI 167778 . C T 3358.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.0421;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.16;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3358,349,0 chrXI 168140 . G A 4095.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.92;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4095,427,0 chrXI 168406 . C T 4058.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4058,441,0 chrXI 168464 . A C 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=152;Dels=0.00;FS=3.536;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.360;QD=23.44;ReadPosRankSum=1.709;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3563,390,0 chrXI 168746 . C T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3239,345,0 chrXI 169303 . G A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=24.07;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3972,426,0 chrXI 169342 . T C 4369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.2004;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-1.039;QD=21.21;ReadPosRankSum=1.681;SB=-2.723e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4369,468,0 chrXI 169345 . G A 4404.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.4117;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=21.38;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4404,465,0 chrXI 169627 . C A 5747.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=15.2569;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.75;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5747,610,0 chrXI 170362 . A G 8139.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.751;DP=351;Dels=0.00;FS=11.808;HaplotypeScore=28.7949;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.716;QD=23.19;ReadPosRankSum=2.917;SB=-3.656e+03 GT:AD:DP:GQ:PL 1/1:3,347:351:99:8139,889,0 chrXI 170773 . T C 5884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.539;DP=288;Dels=0.00;FS=4.126;HaplotypeScore=28.0014;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.103;QD=20.43;ReadPosRankSum=1.684;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:1,286:288:99:5884,634,0 chrXI 170827 . A G 5739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=256;Dels=0.00;FS=12.561;HaplotypeScore=18.4563;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.290;QD=22.42;ReadPosRankSum=3.386;SB=-3.195e+03 GT:AD:DP:GQ:PL 1/1:4,252:256:99:5739,627,0 chrXI 171082 . T C 4285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=206;Dels=0.00;FS=15.881;HaplotypeScore=11.1506;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.084;QD=20.80;ReadPosRankSum=2.907;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:3,202:206:99:4285,468,0 chrXI 171261 . G A 3866.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=25.5044;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.22;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3866,403,0 chrXI 172151 . A G 5035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=221;Dels=0.00;FS=2.998;HaplotypeScore=20.0241;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.061;QD=22.78;ReadPosRankSum=2.394;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:5035,546,0 chrXI 172448 . T C 3393.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.75;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3393,369,0 chrXI 172890 . C T 6122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=263;Dels=0.00;FS=4.468;HaplotypeScore=13.7170;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.863;QD=23.28;ReadPosRankSum=1.693;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:6122,637,0 chrXI 173133 . C T 4591.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.16;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4591,484,0 chrXI 173315 . G C 4554.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=21.7557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4554,504,0 chrXI 173878 . G A 1939 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=19.20;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1972,210,0 chrXI 173977 . A G 2542 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.17;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2575,279,0 chrXI 174046 . G T 2365 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.71;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2398,252,0 chrXI 174085 . G A 1868 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.65;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1901,204,0 chrXI 174125 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.17;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2740,285,0 chrXI 174419 . G C 5708.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=10.8378;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,234:238:99:5708,633,0 chrXI 174509 . C T 5725.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.18;SB=-3.266e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5725,619,0 chrXI 174833 . T A 4573.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.45;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4573,484,0 chrXI 175391 . T G 4319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=209;Dels=0.00;FS=3.245;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=-1.566;QD=20.67;ReadPosRankSum=1.715;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4319,477,0 chrXI 175397 . A G 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.652;DP=213;Dels=0.00;FS=4.223;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=-1.623;QD=19.54;ReadPosRankSum=2.693;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:5,207:213:99:4163,446,0 chrXI 175676 . C G 2486 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.23;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2519,273,0 chrXI 175954 . A G 3105 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5650;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=23.17;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3138,354,0 chrXI 175999 . T C 3619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=3.612;HaplotypeScore=8.2223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.876;QD=21.29;ReadPosRankSum=1.651;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3619,393,0 chrXI 176128 . C T 5042.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.8457;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.84;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5042,526,0 chrXI 176572 . G A 3098 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3131,336,0 chrXI 176780 . G T 2994 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3027,327,0 chrXI 177108 . G A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=16.4782;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.28;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3609,373,0 chrXI 177293 . G A 5487.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.4041;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.40;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5487,574,0 chrXI 177482 . G A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.35;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3912,409,0 chrXI 177551 . C T 3949.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.83;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3949,426,0 chrXI 178198 . C T 2669 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.8308;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.26;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2702,279,0 chrXI 178268 . C A 3275.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.08;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3275,351,0 chrXI 178399 . A G 2309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=109;Dels=0.00;FS=3.041;HaplotypeScore=6.0143;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-1.389;QD=21.18;ReadPosRankSum=2.405;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2342,252,0 chrXI 178410 . A G 2313 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=18.96;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2346,258,0 chrXI 178422 . G A 2713 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.8412;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=20.10;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2746,288,0 chrXI 178538 . G T 4320.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.87;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4320,451,0 chrXI 178613 . G A 3619.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.7689;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.81;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3619,393,0 chrXI 178752 . T C 4847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=209;Dels=0.00;FS=3.403;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.366;QD=23.19;ReadPosRankSum=1.715;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4847,525,0 chrXI 179179 . A G 1766 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=61.8565;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=-0.496;QD=22.94;ReadPosRankSum=2.386;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1799,195,0 chrXI 179200 . T A 1115 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=21.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1148,120,0 chrXI 179275 . T G 303 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=24;Dels=0.00;FS=9.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-0.611;QD=12.62;ReadPosRankSum=2.619;SB=-8.683e-03 GT:AD:DP:GQ:PL 1/1:3,21:24:36:336,36,0 chrXI 179289 . T C 420 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.050;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=0.523;QD=13.55;ReadPosRankSum=2.292;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:2,29:31:51:453,51,0 chrXI 179372 . A G 1664 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.5971;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1697,183,0 chrXI 179422 . T C 1561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.692;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.309;QD=22.62;ReadPosRankSum=2.898;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:3,66:69:99:1594,177,0 chrXI 179509 . G A 2891 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=25.81;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2924,309,0 chrXI 179637 . G A 4533.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.66;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4533,483,0 chrXI 179688 . T C 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.387;DP=153;Dels=0.00;FS=3.895;HaplotypeScore=5.0826;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=1.573;QD=19.44;ReadPosRankSum=1.481;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3007,321,0 chrXI 179723 . C T 2093 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=12.8154;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;MQRankSum=1.708;QD=13.77;ReadPosRankSum=0.664;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:2126,231,0 chrXI 179724 . T G 2051 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=11.2381;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;MQRankSum=1.709;QD=13.58;ReadPosRankSum=0.860;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:2084,228,0 chrXI 179732 . T C 2214 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=17.1462;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=13.58;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:2247,243,0 chrXI 179745 . G A 2270 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=14.19;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2303,246,0 chrXI 180215 . T C 1876 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=61.19;MQ0=0;QD=21.08;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1909,207,0 chrXI 180532 . A G 2115 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.03;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2148,243,0 chrXI 182516 . T G 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=137;Dels=0.00;FS=7.296;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=0.262;QD=22.83;ReadPosRankSum=2.413;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3161,339,0 chrXI 182533 . C T 3021 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.38;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3054,330,0 chrXI 182573 . T C 3200 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.92;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3233,363,0 chrXI 182839 . G T 2806 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.74;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2839,303,0 chrXI 183733 . T C 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.255;DP=138;Dels=0.00;FS=8.952;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.146;QD=22.79;ReadPosRankSum=3.293;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:4,134:138:99:3178,348,0 chrXI 183958 . G C 3436.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.17;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3436,378,0 chrXI 184088 . A G 3025 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.57;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3058,333,0 chrXI 184295 . G A 1759 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=25.13;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1792,189,0 chrXI 184809 . C T 5856.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.10;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5856,613,0 chrXI 185846 . C T 3736.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.1410;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.74;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3736,388,0 chrXI 186668 . A G 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.856;QD=21.74;ReadPosRankSum=1.713;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3891,423,0 chrXI 186950 . T C 3539.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.6178;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.83;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3539,387,0 chrXI 187177 . G A 3078 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3111,333,0 chrXI 187243 . C T 3387.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3387,360,0 chrXI 187398 . A G 4231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=4.393;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.514;QD=25.49;ReadPosRankSum=1.711;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:4231,462,0 chrXI 188112 . C T 4901.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4901,514,0 chrXI 188443 . G A 4761.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=25.32;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4761,496,0 chrXI 188539 . T A 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.397;DP=144;Dels=0.00;FS=15.646;HaplotypeScore=8.5204;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=-0.031;QD=24.72;ReadPosRankSum=3.385;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:4,139:144:99:3559,370,0 chrXI 188557 . T C 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=3.568;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=1.044;QD=22.71;ReadPosRankSum=1.683;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3235,354,0 chrXI 188706 . G A 1708 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=14.23;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:1741,198,0 chrXI 188737 . A G 2087 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.6828;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=18.80;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2120,228,0 chrXI 188875 . T A 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=3.310;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.462;QD=24.37;ReadPosRankSum=1.703;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2957,306,0 chrXI 189011 . G A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.7338;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=24.38;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3510,366,0 chrXI 189096 . G T 2539 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.16;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2572,273,0 chrXI 189104 . T C 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=121;Dels=0.00;FS=5.810;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=1.625;QD=20.64;ReadPosRankSum=2.925;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2531,276,0 chrXI 189493 . A G 4522.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4522,507,0 chrXI 189629 . T C 4889.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.7775;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.73;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4889,531,0 chrXI 189718 . G A 4307.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.3811;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.54;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4307,459,0 chrXI 190193 . T C 3835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.1842;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.914;QD=23.67;ReadPosRankSum=1.711;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3835,414,0 chrXI 190492 . G A 3002 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.41;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3035,318,0 chrXI 190594 . T C 3083 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.50;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3116,348,0 chrXI 190632 . T C 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=142;Dels=0.00;FS=3.399;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.916;QD=21.67;ReadPosRankSum=1.707;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3110,333,0 chrXI 190747 . T C 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.649;DP=128;Dels=0.00;FS=12.115;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.437;QD=23.25;ReadPosRankSum=3.649;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:5,121:128:99:3009,330,0 chrXI 190915 . T C 4746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.611;DP=199;Dels=0.00;FS=7.994;HaplotypeScore=11.7329;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=2.809;QD=23.85;ReadPosRankSum=3.722;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:5,192:199:99:4746,510,0 chrXI 191290 . A G 3117 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=24.35;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3150,336,0 chrXI 191308 . A T 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=6.055;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=-0.402;QD=21.99;ReadPosRankSum=1.704;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2782,297,0 chrXI 191390 . G A 2879 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=25.03;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2912,309,0 chrXI 191416 . G A 2417 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.24;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2450,267,0 chrXI 191510 . G T 3428.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=21.29;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:3428,357,0 chrXI 191520 . T C 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=158;Dels=0.00;FS=3.606;HaplotypeScore=8.3331;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=0.666;QD=19.98;ReadPosRankSum=1.577;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3190,342,0 chrXI 191609 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.9276;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.12;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2969,312,0 chrXI 191928 . A G 4586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.6380;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.388;QD=25.20;ReadPosRankSum=1.694;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4586,490,0 chrXI 192038 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.14;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3356,357,0 chrXI 192111 . G A 2970 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.00;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3003,324,0 chrXI 192187 . C T 3316.01 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2770;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=26.74;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3316,345,0 chrXI 192348 . A G 2658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.831;QD=21.44;ReadPosRankSum=1.704;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2691,291,0 chrXI 192706 . A G 2358 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.98;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2391,267,0 chrXI 192713 . C T 2427 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=20.74;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2460,258,0 chrXI 192718 . T C 2135 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.06;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2168,237,0 chrXI 193196 . A G 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.291;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.624;QD=23.86;ReadPosRankSum=1.651;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3087,345,0 chrXI 193314 . T C 2507 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.25;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2540,282,0 chrXI 193449 . T A 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=150;Dels=0.00;FS=2.688;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.998;QD=25.85;ReadPosRankSum=2.252;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3878,403,0 chrXI 193550 . A T 3992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=161;Dels=0.00;FS=3.556;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-0.355;QD=24.80;ReadPosRankSum=1.646;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3992,426,0 chrXI 193727 . A G 4642.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.09;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,197:201:99:4642,513,0 chrXI 193814 . A G 4616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.8669;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.364;QD=20.42;ReadPosRankSum=2.330;SB=-2.928e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:4616,513,0 chrXI 193829 . T C 4123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=210;Dels=0.00;FS=3.021;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-0.561;QD=19.63;ReadPosRankSum=2.402;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:2,206:210:99:4123,453,0 chrXI 194022 . C T 4475.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=24.19;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4475,478,0 chrXI 194175 . C G 69.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.415;DP=92;Dels=0.00;FS=122.343;HaplotypeScore=11.2813;MLEAC=1;MLEAF=0.500;MQ=56.92;MQ0=0;MQRankSum=0.780;QD=0.75;ReadPosRankSum=-5.044;SB=-3.786e-03 GT:AD:DP:GQ:PL 0/1:63,27:92:99:99,0,1070 chrXI 194428 . C G 4162.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.65;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4162,462,0 chrXI 194564 . A C 3733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=3.146;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.117;QD=22.76;ReadPosRankSum=1.668;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3733,408,0 chrXI 194709 . C T 5044.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.7037;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.87;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5044,523,0 chrXI 195050 . T C 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-1.550;QD=23.44;ReadPosRankSum=1.654;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3150,345,0 chrXI 195153 . G A 2862 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.46;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2895,306,0 chrXI 195199 . T C 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=3.837;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.808;QD=23.35;ReadPosRankSum=1.709;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3503,387,0 chrXI 195226 . A C 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=141;Dels=0.00;FS=2.984;HaplotypeScore=5.0773;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.659;QD=22.11;ReadPosRankSum=2.415;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3151,336,0 chrXI 195254 . T C 3179 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.92;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3212,348,0 chrXI 195269 . G A 2956 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.5731;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=20.82;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2989,324,0 chrXI 195507 . A G 4533.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.89;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4533,486,0 chrXI 195729 . A G 4651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.170;DP=202;Dels=0.00;FS=3.032;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=0.006;QD=23.02;ReadPosRankSum=2.377;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4651,498,0 chrXI 195768 . T C 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=167;Dels=0.01;FS=3.029;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-0.469;QD=21.17;ReadPosRankSum=2.360;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3536,393,0 chrXI 195771 . G A 3660.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=22.05;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3660,384,0 chrXI 195825 . A G 2916 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.83;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2949,324,0 chrXI 196269 . G A 3105 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.8154;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.27;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3138,339,0 chrXI 196346 . T A 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.304;QD=23.20;ReadPosRankSum=1.691;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3991,444,0 chrXI 196712 . T C 4616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;DP=216;Dels=0.00;FS=14.720;HaplotypeScore=17.8819;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.791;QD=21.37;ReadPosRankSum=3.387;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:4,211:216:99:4616,507,0 chrXI 197500 . A G 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=162;Dels=0.00;FS=2.751;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.008;QD=22.07;ReadPosRankSum=2.419;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3576,390,0 chrXI 198215 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3189,342,0 chrXI 198458 . G A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3445,363,0 chrXI 198833 . C T 2228 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.73;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2261,234,0 chrXI 199364 . A G 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.275;DP=152;Dels=0.00;FS=5.184;HaplotypeScore=8.0360;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-0.075;QD=20.55;ReadPosRankSum=3.332;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:4,148:152:99:3157,351,0 chrXI 199373 . A G 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=146;Dels=0.00;FS=2.690;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=1.019;QD=20.58;ReadPosRankSum=2.349;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3038,339,0 chrXI 199443 . T C 2990 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.06;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3023,324,0 chrXI 199502 . C T 2239 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.35;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2272,240,0 chrXI 199513 . C T 2217 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.74;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2250,243,0 chrXI 199547 . G A 2035 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.15;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2068,225,0 chrXI 199676 . A G 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.672;DP=133;Dels=0.00;FS=11.548;HaplotypeScore=11.5381;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.275;QD=20.62;ReadPosRankSum=2.947;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:3,129:133:99:2776,303,0 chrXI 199802 . A G 3076 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.93;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3109,336,0 chrXI 199892 . T G 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=3.639;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.749;QD=22.55;ReadPosRankSum=1.708;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3235,351,0 chrXI 199979 . T C 2662 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.87;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2695,294,0 chrXI 199994 . T C 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.291;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-0.758;QD=20.89;ReadPosRankSum=1.705;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2728,297,0 chrXI 200056 . T C 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=134;Dels=0.00;FS=3.018;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.158;QD=21.51;ReadPosRankSum=2.412;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:2,130:134:99:2915,327,0 chrXI 200099 . G A 2813 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.69;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2846,309,0 chrXI 200183 . T C 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=117;Dels=0.00;FS=6.599;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=1.020;QD=22.40;ReadPosRankSum=2.408;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2654,288,0 chrXI 200248 . T C 3147 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=25.38;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3180,345,0 chrXI 200345 . A T 2352 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=21.58;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2385,261,0 chrXI 200367 . A C 2171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=103;Dels=0.00;FS=2.669;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.34;MQ0=0;MQRankSum=-1.494;QD=21.08;ReadPosRankSum=2.402;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2204,240,0 chrXI 200384 . T C 1649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=8.197;HaplotypeScore=72.8890;MLEAC=2;MLEAF=1.00;MQ=38.50;MQ0=0;MQRankSum=1.892;QD=19.63;ReadPosRankSum=2.391;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1682,183,0 chrXI 200402 . G A 1324 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=42.40;MQ0=0;QD=17.89;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1357,144,0 chrXI 200464 . T A 1903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=4.291;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-1.069;QD=20.24;ReadPosRankSum=1.695;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1936,207,0 chrXI 200490 . A G 1868 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=20.76;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1901,204,0 chrXI 200506 . A G 1527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;MQRankSum=0.000;QD=19.09;ReadPosRankSum=1.689;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1560,171,0 chrXI 200539 . A G 892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=63;Dels=0.00;FS=6.232;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;MQRankSum=-1.431;QD=14.16;ReadPosRankSum=2.372;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:925,105,0 chrXI 200552 . C T 921 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.57;MQ0=0;QD=14.39;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:954,111,0 chrXI 200580 . G A 924 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.98;MQ0=0;QD=13.79;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:957,111,0 chrXI 200581 . A G 908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.490;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.98;MQ0=0;MQRankSum=-0.905;QD=13.55;ReadPosRankSum=1.681;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:941,111,0 chrXI 200609 . C T 877 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.59;MQ0=0;QD=14.38;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:910,105,0 chrXI 200616 . G C 813 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=13.55;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:96:846,96,0 chrXI 200667 . T C 984 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=20.50;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1017,111,0 chrXI 200678 . A C 1196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;MQRankSum=0.577;QD=20.98;ReadPosRankSum=1.672;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1229,132,0 chrXI 200708 . G A 1323 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=22.05;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1356,144,0 chrXI 200767 . T A 1434 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=20.20;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1467,156,0 chrXI 200776 . C A 1465 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;QD=19.80;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1498,156,0 chrXI 200798 . T C 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=77;Dels=0.00;FS=2.943;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;MQRankSum=-1.009;QD=16.42;ReadPosRankSum=2.354;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1297,144,0 chrXI 200908 . G A 2323 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=18.44;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2356,270,0 chrXI 201101 . C T 5487.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.9272;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.35;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5487,597,0 chrXI 201270 . G A 4634.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.60;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4634,498,0 chrXI 201376 . T C 6577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=296;Dels=0.00;FS=2.996;HaplotypeScore=14.8388;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.465;QD=22.22;ReadPosRankSum=2.408;SB=-3.305e+03 GT:AD:DP:GQ:PL 1/1:2,292:296:99:6577,729,0 chrXI 201496 . C T 4978.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=19.1996;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.00;SB=-3.040e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:4978,520,0 chrXI 201685 . T C 4103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=191;Dels=0.00;FS=4.771;HaplotypeScore=10.0329;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.329;QD=21.48;ReadPosRankSum=1.714;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:4103,450,0 chrXI 201727 . A G 4214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=190;Dels=0.00;FS=2.559;HaplotypeScore=11.7688;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.238;QD=22.18;ReadPosRankSum=2.953;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:3,187:190:99:4214,462,0 chrXI 202169 . A G 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=119;Dels=0.00;FS=3.123;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.903;QD=21.94;ReadPosRankSum=1.703;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2644,294,0 chrXI 202203 . G T 2911 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.56;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2944,306,0 chrXI 202204 . C T 2925 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.35;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2958,315,0 chrXI 202579 . T G 1363 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=41.23;MQ0=0;QD=23.10;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1396,150,0 chrXI 202593 . A G 1079 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.53;MQ0=0;QD=24.52;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1112,120,0 chrXI 202594 . T A 1156 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.53;MQ0=0;QD=26.27;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1189,123,0 chrXI 202624 . T C 832 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;QD=20.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:93:865,93,0 chrXI 202626 . C T 837 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;QD=20.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:90:870,90,0 chrXI 202631 . G C 723 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:87:756,87,0 chrXI 202634 . C G 699 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=1;QD=18.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,36:37:81:732,81,0 chrXI 202983 . A T 12.99 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=2;MQRankSum=0.727;QD=2.16;ReadPosRankSum=-0.727;SB=1.45 GT:AD:DP:GQ:PL 1/1:3,3:6:6:44,6,0 chrXI 203086 . G C 1609 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=84.8796;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=18.71;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1642,183,0 chrXI 203201 . T C 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=13.7275;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=-0.595;QD=21.56;ReadPosRankSum=1.706;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2944,324,0 chrXI 204122 . C T 2263 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2296,243,0 chrXI 204194 . A T 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=5.804;HaplotypeScore=13.5111;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.645;QD=25.20;ReadPosRankSum=1.682;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3453,366,0 chrXI 204464 . G A 4703.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.28;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4703,507,0 chrXI 205481 . G T 2617 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.79;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2650,279,0 chrXI 206732 . G A 3448.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3448,372,0 chrXI 207105 . G A 4116.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4116,447,0 chrXI 207429 . C T 3098 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=19.73;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3131,327,0 chrXI 207449 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.31;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3347,346,0 chrXI 207515 . C T 3941.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.6517;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.18;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3941,411,0 chrXI 208639 . C A 2295 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2328,243,0 chrXI 208745 . A G 2700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=122;Dels=0.00;FS=3.047;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.010;QD=22.13;ReadPosRankSum=2.368;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:2,118:122:99:2733,306,0 chrXI 209107 . T C 4864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=217;Dels=0.00;FS=6.455;HaplotypeScore=14.9961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.029;QD=22.41;ReadPosRankSum=2.427;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:4864,543,0 chrXI 209296 . G A 5463.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.4361;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.72;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5463,577,0 chrXI 209449 . G A 4946.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.90;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4946,540,0 chrXI 209983 . A G 2759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.5089;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.634;QD=22.43;ReadPosRankSum=1.704;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2792,306,0 chrXI 210799 . C T 5196.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.09;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5196,570,0 chrXI 211000 . C T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3295,357,0 chrXI 211816 . A G 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=179;Dels=0.00;FS=2.851;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.021;QD=23.16;ReadPosRankSum=2.340;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4145,453,0 chrXI 211921 . A G 4646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=199;Dels=0.00;FS=3.000;HaplotypeScore=19.9903;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.302;QD=23.35;ReadPosRankSum=2.400;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4646,504,0 chrXI 211999 . G A 4192.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.9815;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=25.56;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4192,439,0 chrXI 212173 . A G 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-0.342;QD=21.45;ReadPosRankSum=2.394;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2886,321,0 chrXI 212189 . G A 2543 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.11;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2576,279,0 chrXI 212552 . A G 2422 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.77;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2455,270,0 chrXI 212630 . G A 1637 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.72;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1670,180,0 chrXI 212831 . A G 3658.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2970;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.07;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3658,402,0 chrXI 213004 . C T 4877.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.2897;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.11;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:4877,508,0 chrXI 213314 . A G 4239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=190;Dels=0.00;FS=2.939;HaplotypeScore=6.7237;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.157;QD=22.31;ReadPosRankSum=2.424;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4239,459,0 chrXI 213351 . T G 3709.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.9706;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=19.73;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3709,411,0 chrXI 213360 . A G 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=-0.720;QD=19.65;ReadPosRankSum=2.344;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:3674,399,0 chrXI 213389 . T G 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=189;Dels=0.00;FS=4.702;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=0.298;QD=20.39;ReadPosRankSum=1.676;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,185:189:99:3854,420,0 chrXI 213499 . C A 2720 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.7148;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=22.67;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2753,291,0 chrXI 213521 . T C 2097 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=20.36;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2130,234,0 chrXI 213549 . T A 1708 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;QD=18.98;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1741,186,0 chrXI 213597 . T G 1488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=8.150;HaplotypeScore=93.4921;MLEAC=2;MLEAF=1.00;MQ=40.69;MQ0=0;MQRankSum=-2.118;QD=14.31;ReadPosRankSum=2.308;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1521,168,0 chrXI 213630 . C T 1475 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;QD=14.60;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1508,156,0 chrXI 213633 . C T 1407 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=13.79;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1440,150,0 chrXI 213680 . G A 1936 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.38;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1969,210,0 chrXI 213714 . A G 1948 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=20.29;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1981,216,0 chrXI 213716 . A C 1925 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=20.05;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1958,219,0 chrXI 213750 . T C 1876 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.3494;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=17.53;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1909,216,0 chrXI 213763 . A G 1595 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=16.61;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1628,180,0 chrXI 213986 . G A 3699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.111;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.896;QD=25.51;ReadPosRankSum=1.087;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3699,360,0 chrXI 214021 . C G 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.339;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8811;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.209;QD=23.62;ReadPosRankSum=-1.585;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,140:145:99:3425,350,0 chrXI 214124 . G A 3554.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.5023;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3554,381,0 chrXI 214537 . A G 2774 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.2186;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2807,303,0 chrXI 215535 . A G 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=122;Dels=0.00;FS=6.201;HaplotypeScore=14.8389;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.381;QD=23.11;ReadPosRankSum=2.369;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2852,315,0 chrXI 215651 . A G 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=125;Dels=0.00;FS=7.430;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.498;QD=23.30;ReadPosRankSum=2.410;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2946,321,0 chrXI 215962 . A G 4640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=220;Dels=0.00;FS=6.327;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=0.119;QD=21.09;ReadPosRankSum=2.427;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:2,215:220:99:4640,498,0 chrXI 215965 . T C 4650.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.48;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:4650,495,0 chrXI 216007 . G A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.43;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3392,357,0 chrXI 216046 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.13;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3268,342,0 chrXI 216646 . T C 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=7.165;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.803;QD=22.68;ReadPosRankSum=2.408;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2732,303,0 chrXI 216709 . A C 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.5023;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.511;QD=22.86;ReadPosRankSum=1.632;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3210,348,0 chrXI 216924 . A G 1820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=3.721;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;MQRankSum=-0.392;QD=17.17;ReadPosRankSum=1.699;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1853,201,0 chrXI 216950 . C A 1340 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=14.26;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1373,147,0 chrXI 216969 . G A 1209 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.27;MQ0=0;QD=12.21;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1242,129,0 chrXI 216973 . A G 1131 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=37.56;MQ0=0;QD=10.87;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1164,129,0 chrXI 217457 . A T 3186 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.43;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3219,342,0 chrXI 217814 . A G 4080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=169;Dels=0.00;FS=5.441;HaplotypeScore=15.0700;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.042;QD=24.14;ReadPosRankSum=2.959;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:4080,438,0 chrXI 218207 . T C 5124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=221;Dels=0.00;FS=3.517;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.303;QD=23.19;ReadPosRankSum=1.716;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:1,217:221:99:5124,567,0 chrXI 218544 . G A 2744 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.66;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2777,297,0 chrXI 218804 . A G 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=110;Dels=0.00;FS=2.691;HaplotypeScore=5.5122;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.526;QD=21.85;ReadPosRankSum=2.383;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2436,264,0 chrXI 218948 . T A 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.080;DP=133;Dels=0.00;FS=2.972;HaplotypeScore=8.2463;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.009;QD=19.21;ReadPosRankSum=2.413;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2588,270,0 chrXI 218957 . G A 2658 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=19.40;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2691,288,0 chrXI 218976 . A G 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=4.559;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.718;QD=20.83;ReadPosRankSum=1.707;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2970,324,0 chrXI 219042 . T G 3103 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.87;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3136,345,0 chrXI 219155 . C T 3287.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.83;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3287,354,0 chrXI 219243 . C T 3932.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.8338;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.69;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3932,423,0 chrXI 219404 . C T 3050 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.93;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3083,330,0 chrXI 219454 . G C 3676.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.87;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3676,396,0 chrXI 219481 . C T 4117.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.95;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4117,427,0 chrXI 219762 . A T 4571.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.7560;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.56;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4571,489,0 chrXI 219865 . A C 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=104;Dels=0.00;FS=3.053;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-0.533;QD=22.15;ReadPosRankSum=2.355;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2337,255,0 chrXI 220092 . T C 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.773;QD=23.62;ReadPosRankSum=1.705;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:3151,345,0 chrXI 220166 . C T 2932 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.09;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2965,312,0 chrXI 220315 . A G 3919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=195;Dels=0.00;FS=4.163;HaplotypeScore=6.2470;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.547;QD=20.10;ReadPosRankSum=1.714;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:3919,441,0 chrXI 220323 . C A 3905.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=20.45;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3905,429,0 chrXI 220647 . A G 4940.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.5364;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.56;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4940,549,0 chrXI 220701 . T C 5021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.0952;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.955;QD=22.52;ReadPosRankSum=1.717;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:5021,564,0 chrXI 220819 . C A 4450.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.8088;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.94;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4450,475,0 chrXI 220881 . G A 3890.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.49;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3890,420,0 chrXI 220914 . T C 2911 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.56;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2944,321,0 chrXI 220977 . G T 2879 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.2079;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2912,315,0 chrXI 221181 . C G 2481 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.6586;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2514,276,0 chrXI 221312 . A T 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=144;Dels=0.00;FS=3.741;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.903;QD=25.24;ReadPosRankSum=1.659;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3635,390,0 chrXI 221472 . A C 5482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.817;DP=228;Dels=0.00;FS=13.913;HaplotypeScore=17.6574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.674;QD=24.04;ReadPosRankSum=2.906;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:3,222:228:99:5482,597,0 chrXI 221820 . G A 1987 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.4423;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.70;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,93:96:99:2020,213,0 chrXI 221951 . G A 2877 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2910,300,0 chrXI 222795 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.17;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2700,288,0 chrXI 223150 . C A 2371 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.16;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2404,258,0 chrXI 223233 . T C 3294.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.81;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3294,360,0 chrXI 223330 . T C 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=18.3212;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;MQRankSum=-1.268;QD=23.73;ReadPosRankSum=1.701;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2715,291,0 chrXI 223465 . C T 3167 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.99;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3200,331,0 chrXI 224066 . T A 3491.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.25;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3491,372,0 chrXI 224457 . A G 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=2.640;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.755;QD=22.19;ReadPosRankSum=2.408;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2674,291,0 chrXI 224551 . G A 2858 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.6318;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2891,312,0 chrXI 224634 . G A 2430 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2463,258,0 chrXI 225412 . G C 4258.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.9758;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.29;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4258,459,0 chrXI 225480 . T G 3912.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.48;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3912,429,0 chrXI 225609 . T C 3720.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=13.2372;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.41;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3720,402,0 chrXI 225834 . A T 4187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.419;QD=23.13;ReadPosRankSum=1.558;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4187,459,0 chrXI 225909 . T A 3769.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.17;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3769,405,0 chrXI 226659 . T C 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=144;Dels=0.00;FS=5.928;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.542;QD=23.08;ReadPosRankSum=2.895;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:3324,360,0 chrXI 227254 . C G 9657.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.132;DP=472;Dels=0.00;FS=0.000;HaplotypeScore=28.9605;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.142;QD=20.46;ReadPosRankSum=0.007;SB=-4.395e+03 GT:AD:DP:GQ:PL 1/1:1,461:472:99:9657,1049,0 chrXI 227319 . C T 9547.01 filter AC=2;AF=1.00;AN=2;DP=415;Dels=0.00;FS=0.000;HaplotypeScore=31.8912;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.00;SB=-4.106e+03 GT:AD:DP:GQ:PL 1/1:0,415:415:99:9547,1018,0 chrXI 227480 . C T 4479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.6205;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=1.204;QD=18.90;ReadPosRankSum=-0.895;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:4479,489,0 chrXI 227482 . C T 4558.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=8.7883;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.31;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:4558,478,0 chrXI 227625 . C T 3644.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.78;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3644,376,0 chrXI 227937 . T C 4083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.781;QD=25.20;ReadPosRankSum=2.404;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:2,160:162:99:4083,441,0 chrXI 228339 . G A 6425.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=18.3943;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.95;SB=-3.393e+03 GT:AD:DP:GQ:PL 1/1:0,278:280:99:6425,673,0 chrXI 228576 . T C 6363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=280;Dels=0.00;FS=3.722;HaplotypeScore=8.1203;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.623;QD=22.73;ReadPosRankSum=1.695;SB=-3.098e+03 GT:AD:DP:GQ:PL 1/1:1,277:280:99:6363,711,0 chrXI 228751 . T C 4173.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.55;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4173,444,0 chrXI 229432 . C T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4060,424,0 chrXI 229903 . A G 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.8825;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-1.318;QD=20.44;ReadPosRankSum=1.706;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:2813,309,0 chrXI 229929 . C T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.4385;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=23.82;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3311,345,0 chrXI 230122 . A G 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=182;Dels=0.00;FS=6.239;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.196;QD=18.20;ReadPosRankSum=2.423;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3312,363,0 chrXI 230141 . A G 3299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.111;QD=21.15;ReadPosRankSum=1.599;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3299,363,0 chrXI 230208 . G A 3015 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.33;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3048,327,0 chrXI 230290 . C T 4166.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.8101;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=23.40;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4166,453,0 chrXI 230368 . T G 4003.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.71;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4003,429,0 chrXI 230455 . T C 3023 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.90;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3056,336,0 chrXI 230704 . G A 4140.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.94;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4140,430,0 chrXI 230894 . A G 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=178;Dels=0.00;FS=3.024;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.798;QD=23.99;ReadPosRankSum=2.422;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:4271,462,0 chrXI 231238 . G A 2198 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.90;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2231,249,0 chrXI 231462 . C T 2394 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.76;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2427,255,0 chrXI 231486 . G A 2476 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.1147;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.16;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2509,261,0 chrXI 231542 . C T 2920 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.2039;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.28;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2953,321,0 chrXI 231793 . A G 2224 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.93;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2257,243,0 chrXI 232363 . T G 2672 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=23.03;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2705,306,0 chrXI 232567 . T C 2220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;MQRankSum=-0.062;QD=17.34;ReadPosRankSum=3.347;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:5,123:128:99:2253,243,0 chrXI 232583 . A G 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=125;Dels=0.00;FS=6.126;HaplotypeScore=4.3856;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;MQRankSum=-1.072;QD=15.16;ReadPosRankSum=2.233;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:1928,191,0 chrXI 232793 . C T 3768.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.2342;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=24.63;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3768,402,0 chrXI 232838 . T C 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.0818;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=-0.551;QD=20.37;ReadPosRankSum=1.705;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,128:132:99:2722,294,0 chrXI 232839 . C T 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=-0.172;QD=20.57;ReadPosRankSum=1.547;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2769,294,0 chrXI 233135 . C T 5117.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.7084;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.48;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:5117,538,0 chrXI 233222 . T C 5252.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.5812;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.454;QD=24.54;ReadPosRankSum=1.716;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:5252,573,0 chrXI 233252 . T G 4795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=214;Dels=0.00;FS=2.901;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.331;QD=22.41;ReadPosRankSum=2.334;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:2,211:214:99:4795,537,0 chrXI 233993 . G A 1121 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.02;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1154,126,0 chrXI 234252 . G A 1554 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2616;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.28;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1587,174,0 chrXI 234260 . T A 1361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.565;DP=93;Dels=0.00;FS=13.754;HaplotypeScore=16.1039;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=-0.999;QD=14.63;ReadPosRankSum=1.361;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:5,88:93:99:1394,153,0 chrXI 234299 . G A 1680 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=17.32;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1713,186,0 chrXI 234890 . A G 4440.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4440,492,0 chrXI 235232 . A G 4788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=3.209;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.250;QD=23.70;ReadPosRankSum=1.680;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4788,522,0 chrXI 235318 . G A 2645 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=396.7014;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=15.74;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2678,276,0 chrXI 236317 . C G 3676.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3676,399,0 chrXI 237318 . A T 2495 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.3263;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.28;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2528,261,0 chrXI 237513 . G A 3771.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.8307;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.65;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3771,408,0 chrXI 237859 . T C 2820 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2853,306,0 chrXI 238513 . C G 3945.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3945,438,0 chrXI 239211 . G A 2654 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=6.7491;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.80;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2687,282,0 chrXI 239336 . A G 4189.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.8658;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.21;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4189,462,0 chrXI 239429 . G A 4593.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=19.0351;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.51;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,200:204:99:4593,498,0 chrXI 240241 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.32;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3420,363,0 chrXI 240262 . T C 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=186;Dels=0.00;FS=5.906;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-1.016;QD=20.10;ReadPosRankSum=2.940;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:3,181:186:99:3739,414,0 chrXI 240328 . A G 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=3.115;HaplotypeScore=11.4346;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.144;QD=22.86;ReadPosRankSum=1.711;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3841,432,0 chrXI 240637 . G A 8302.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.23;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,328:329:99:8302,889,0 chrXI 240992 . G A 3855.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3855,420,0 chrXI 241363 . T C 3811.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.7156;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.29;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3811,432,0 chrXI 241418 . C T 3436.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.3842;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3436,360,0 chrXI 241512 . T C 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=3.570;HaplotypeScore=6.6902;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=0.609;QD=22.56;ReadPosRankSum=1.694;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4128,444,0 chrXI 241522 . C T 3936.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=21.16;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3936,423,0 chrXI 241543 . C T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.80;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3794,394,0 chrXI 241707 . T G 3759.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.73;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3759,411,0 chrXI 242410 . A G 5986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=258;Dels=0.00;FS=9.981;HaplotypeScore=16.9677;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.152;QD=23.20;ReadPosRankSum=2.926;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:3,254:258:99:5986,660,0 chrXI 242705 . C A 4052.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.12;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4052,421,0 chrXI 242958 . A G 1667 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.23;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1700,186,0 chrXI 243364 . G A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.1270;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.30;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3795,397,0 chrXI 243550 . C T 3590.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.2310;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.58;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3590,375,0 chrXI 243712 . C A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=21.80;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3445,369,0 chrXI 243724 . C T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.54;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3575,373,0 chrXI 243754 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.7422;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.66;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3596,376,0 chrXI 243823 . C T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=21.16;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3703,399,0 chrXI 243838 . C T 3889.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.80;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3889,400,0 chrXI 244570 . C T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3434,372,0 chrXI 245589 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.9550;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.99;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3256,345,0 chrXI 245903 . C G 1916 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=21.05;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1949,210,0 chrXI 245907 . T C 1820 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=19.78;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1853,210,0 chrXI 245954 . A G 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.855;QD=17.09;ReadPosRankSum=2.276;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1486,159,0 chrXI 246068 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.05;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2138,231,0 chrXI 246130 . T C 2095 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.06;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2128,234,0 chrXI 246131 . G A 2047 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=17.65;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2080,228,0 chrXI 246336 . G A 4465.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=28.7834;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.89;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4465,466,0 chrXI 246510 . G A 4798.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=21.6237;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.96;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4798,502,0 chrXI 247900 . A T 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=128;Dels=0.00;FS=6.113;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-1.008;QD=23.82;ReadPosRankSum=2.944;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:3082,327,0 chrXI 247966 . G A 12.50 LowQual;filter AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=135.8712;MLEAC=1;MLEAF=0.500;MQ=56.32;MQ0=0;QD=0.08;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,146:152:6:43,6,0 chrXI 248019 . G C 3338.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.3656;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.54;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3338,366,0 chrXI 248310 . C A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=17.96;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3268,345,0 chrXI 249406 . A C 5119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=211;Dels=0.00;FS=3.537;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.330;QD=24.26;ReadPosRankSum=1.633;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:5119,561,0 chrXI 249447 . T A 4731.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.2208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4731,519,0 chrXI 249660 . A G 3172 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.03;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3205,351,0 chrXI 249723 . T C 2401 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.09;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2434,267,0 chrXI 249846 . C T 1912 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.78;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1945,216,0 chrXI 249855 . T C 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=4.075;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=0.979;QD=21.03;ReadPosRankSum=1.694;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1968,213,0 chrXI 249882 . A G 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-1.012;QD=20.36;ReadPosRankSum=1.698;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2089,222,0 chrXI 249915 . T C 2272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=3.432;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.706;QD=20.84;ReadPosRankSum=1.668;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2305,252,0 chrXI 249960 . A G 2282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.351;QD=22.59;ReadPosRankSum=1.697;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2315,261,0 chrXI 250113 . G A 2852 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.38;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2885,312,0 chrXI 250134 . G A 3134 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.7961;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.92;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3167,339,0 chrXI 250621 . C T 4991.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.28;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4991,523,0 chrXI 250932 . A G 4303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=201;Dels=0.00;FS=5.860;HaplotypeScore=13.7442;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.503;QD=21.41;ReadPosRankSum=2.944;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:3,193:201:99:4303,477,0 chrXI 251308 . C A 2571 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=6.5786;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.49;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2604,270,0 chrXI 251543 . A G 2694 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.73;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2727,300,0 chrXI 252482 . C G 4437.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4437,486,0 chrXI 253210 . C A 3540.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1490;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.29;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3540,367,0 chrXI 255125 . C G 4714.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4714,519,0 chrXI 255694 . A C 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=7.976;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=0.866;QD=23.29;ReadPosRankSum=2.412;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3107,336,0 chrXI 255697 . T C 2853 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.01;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2886,315,0 chrXI 257708 . C T 5518.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.10;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5518,571,0 chrXI 257762 . G A 3895.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=15.4717;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.18;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3895,417,0 chrXI 257878 . T A 4659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=198;Dels=0.00;FS=3.990;HaplotypeScore=11.2285;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.910;QD=23.53;ReadPosRankSum=1.715;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4659,496,0 chrXI 258164 . A G 4270.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4270,456,0 chrXI 258576 . T C 6700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=312;Dels=0.00;FS=3.052;HaplotypeScore=7.1258;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.440;QD=21.47;ReadPosRankSum=1.665;SB=-3.974e+03 GT:AD:DP:GQ:PL 1/1:1,310:312:99:6700,747,0 chrXI 258604 . A T 6264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=305;Dels=0.00;FS=2.985;HaplotypeScore=19.9955;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.672;QD=20.54;ReadPosRankSum=2.393;SB=-3.777e+03 GT:AD:DP:GQ:PL 1/1:2,303:305:99:6264,673,0 chrXI 258873 . A G 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.1668;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.022;QD=20.66;ReadPosRankSum=1.689;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3326,366,0 chrXI 259465 . T C 3417.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.3494;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.08;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3417,387,0 chrXI 259516 . T C 2782 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.30;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2815,324,0 chrXI 259792 . G A 3720.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.80;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3720,390,0 chrXI 260037 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=15.5969;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.60;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,137:143:99:2999,324,0 chrXI 260106 . A G 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=5.582;HaplotypeScore=4.6460;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.602;QD=24.28;ReadPosRankSum=1.708;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3424,366,0 chrXI 260129 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.36;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3332,360,0 chrXI 260152 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.93;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3103,333,0 chrXI 260236 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=21.04;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2852,297,0 chrXI 260245 . A C 2709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=142;Dels=0.00;FS=3.033;HaplotypeScore=5.5056;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=1.134;QD=19.08;ReadPosRankSum=2.415;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2742,309,0 chrXI 260286 . A G 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.1205;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.499;QD=20.88;ReadPosRankSum=1.713;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3717,396,0 chrXI 260628 . T C 4415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.00;FS=3.343;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.985;QD=23.24;ReadPosRankSum=1.696;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4415,486,0 chrXI 260837 . G A 2971 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7889;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.92;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3004,330,0 chrXI 260953 . T C 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.089;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=121.7546;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=1.762;QD=15.48;ReadPosRankSum=1.814;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:2277,255,0 chrXI 261359 . T C 4331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=203;Dels=0.00;FS=3.937;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.196;QD=21.34;ReadPosRankSum=1.698;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4331,477,0 chrXI 262447 . T C 4273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=181;Dels=0.00;FS=6.144;HaplotypeScore=15.5406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.449;QD=23.61;ReadPosRankSum=2.367;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:2,176:181:99:4273,468,0 chrXI 262807 . A G 4170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=18.9949;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.329;QD=20.85;ReadPosRankSum=1.715;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4170,453,0 chrXI 263004 . G A 4762.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4762,507,0 chrXI 263586 . G A 6928.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=12.3280;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.22;SB=-3.198e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:6928,756,0 chrXI 263873 . A G 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=167;Dels=0.00;FS=3.024;HaplotypeScore=9.6166;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.392;QD=22.31;ReadPosRankSum=2.420;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:2,163:167:99:3725,405,0 chrXI 264611 . T G 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=117;Dels=0.00;FS=9.724;HaplotypeScore=8.4539;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=-0.043;QD=21.40;ReadPosRankSum=2.940;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2537,279,0 chrXI 264824 . T C 3302.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.1545;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.76;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3302,366,0 chrXI 264974 . C T 4915.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.01;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.08;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4915,526,0 chrXI 265026 . A G 5097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.614;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.5096;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.143;QD=23.82;ReadPosRankSum=2.002;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:5097,527,0 chrXI 265458 . T C 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.301;DP=144;Dels=0.00;FS=8.288;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-2.717;QD=22.28;ReadPosRankSum=3.313;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:4,140:144:99:3242,357,0 chrXI 265522 . G A 3850.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2798;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.06;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3850,403,0 chrXI 265917 . T C 1873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=4.344;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.493;QD=21.53;ReadPosRankSum=1.692;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1906,204,0 chrXI 269507 . G T 3304.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.32;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3304,340,0 chrXI 269524 . G A 3111 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.06;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3144,327,0 chrXI 270000 . T C 3491.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.43;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3491,375,0 chrXI 270096 . T C 4403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=175;Dels=0.00;FS=2.687;HaplotypeScore=11.2108;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.812;QD=25.16;ReadPosRankSum=2.379;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:4403,492,0 chrXI 270178 . G C 3596.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.06;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3596,390,0 chrXI 270231 . A G 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=15.5797;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.684;QD=19.96;ReadPosRankSum=1.689;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,161:165:99:3294,369,0 chrXI 270852 . A G 3381.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.48;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3381,372,0 chrXI 271048 . C T 3464.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.2369;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.79;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3464,375,0 chrXI 271129 . C T 2367 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=20.95;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2400,258,0 chrXI 271133 . G T 2342 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=20.73;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2375,249,0 chrXI 271156 . T G 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.798;QD=19.43;ReadPosRankSum=1.702;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2267,243,0 chrXI 271321 . C T 2563 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.68;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2596,279,0 chrXI 271548 . A C 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=3.531;HaplotypeScore=8.1958;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.592;QD=23.33;ReadPosRankSum=1.704;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2949,321,0 chrXI 273882 . A G 5159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=218;Dels=0.00;FS=9.776;HaplotypeScore=13.9807;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.134;QD=23.67;ReadPosRankSum=2.949;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:3,214:218:99:5159,561,0 chrXI 274155 . G A 4532.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.7725;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.98;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4532,475,0 chrXI 274263 . C A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.1594;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=19.48;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3292,366,0 chrXI 274276 . T C 3215 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.15;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3248,354,0 chrXI 274476 . G A 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.056;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.630;QD=23.52;ReadPosRankSum=-0.533;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:2,151:157:99:3692,339,0 chrXI 274746 . T C 4543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.392;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=22.3092;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.528;QD=22.16;ReadPosRankSum=1.647;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4543,477,0 chrXI 274968 . T C 5059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.982;DP=242;Dels=0.00;FS=15.318;HaplotypeScore=12.3654;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.359;QD=20.90;ReadPosRankSum=4.107;SB=-2.857e+03 GT:AD:DP:GQ:PL 1/1:6,235:242:99:5059,552,0 chrXI 275016 . A G 5729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.347;DP=260;Dels=0.00;FS=8.173;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.325;QD=22.03;ReadPosRankSum=3.387;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:4,256:260:99:5729,633,0 chrXI 275426 . T C 2870 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.96;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2903,315,0 chrXI 275624 . G T 3519.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.8934;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.61;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3519,372,0 chrXI 275944 . T C 6595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=292;Dels=0.00;FS=11.651;HaplotypeScore=14.5677;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.784;QD=22.59;ReadPosRankSum=2.880;SB=-2.913e+03 GT:AD:DP:GQ:PL 1/1:3,289:292:99:6595,723,0 chrXI 276020 . T C 5035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=238;Dels=0.00;FS=8.940;HaplotypeScore=20.0485;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.140;QD=21.16;ReadPosRankSum=2.408;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:2,235:238:99:5035,555,0 chrXI 276092 . G A 4122.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=23.83;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4122,430,0 chrXI 276098 . G A 3969.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=24.05;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3969,420,0 chrXI 276275 . T A 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.179;DP=119;Dels=0.00;FS=7.165;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.469;QD=23.61;ReadPosRankSum=2.387;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2842,306,0 chrXI 276368 . C T 3974.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.38;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3974,420,0 chrXI 276446 . G A 4225.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.6383;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4225,459,0 chrXI 276842 . A G 5017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=0.495;QD=23.78;ReadPosRankSum=1.699;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,209:211:99:5017,540,0 chrXI 276872 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.7796;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.28;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3590,408,0 chrXI 276968 . G C 4527.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.6610;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.43;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:1,229:233:99:4527,507,0 chrXI 277055 . G T 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.196;DP=122;Dels=0.02;FS=80.442;HaplotypeScore=22.8295;MLEAC=1;MLEAF=0.500;MQ=56.60;MQ0=0;MQRankSum=0.478;QD=0.33;ReadPosRankSum=-2.156;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,21:119:70:70,0,643 chrXI 277059 . A T 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.678;DP=117;Dels=0.01;FS=84.307;HaplotypeScore=18.0539;MLEAC=1;MLEAF=0.500;MQ=56.66;MQ0=0;MQRankSum=-0.062;QD=0.21;ReadPosRankSum=-3.047;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,23:116:54:54,0,688 chrXI 277106 . T C 2082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=1.275;QD=19.64;ReadPosRankSum=0.359;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2115,234,0 chrXI 277663 . G C 4024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.1367;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.962;QD=21.87;ReadPosRankSum=-0.943;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:1,179:184:99:4024,450,0 chrXI 277694 . G T 4289.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.23;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4289,451,0 chrXI 277754 . T C 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=186;Dels=0.00;FS=5.800;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-1.762;QD=22.38;ReadPosRankSum=2.908;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:4163,447,0 chrXI 277761 . G A 4459.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.52;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4459,471,0 chrXI 277809 . A G 4421.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.3361;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.05;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4421,471,0 chrXI 278102 . A G 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.4309;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.687;QD=19.68;ReadPosRankSum=1.677;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2532,282,0 chrXI 278119 . C A 2357 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=20.68;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2390,261,0 chrXI 278143 . T G 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=117;Dels=0.00;FS=8.816;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.032;QD=19.50;ReadPosRankSum=2.407;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:2,113:117:99:2314,252,0 chrXI 278179 . C T 2755 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=22.40;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2788,300,0 chrXI 278223 . T A 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=123;Dels=0.00;FS=7.035;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=0.610;QD=19.63;ReadPosRankSum=2.410;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2448,261,0 chrXI 278250 . A G 27.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.445;DP=130;Dels=0.00;FS=4.201;HaplotypeScore=107.7864;MLEAC=1;MLEAF=0.500;MQ=48.67;MQ0=0;MQRankSum=2.942;QD=0.21;ReadPosRankSum=-3.729;SB=-9.518e+01 GT:AD:DP:GQ:PL 0/1:125,5:130:11:57,0,11 chrXI 278355 . G A 3133 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=31.9761;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.17;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3166,348,0 chrXI 278388 . C T 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.162;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.3654;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=1.071;QD=21.80;ReadPosRankSum=-0.342;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3313,338,0 chrXI 278406 . C T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.34;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3457,375,0 chrXI 278505 . G A 2742 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=17.58;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2775,297,0 chrXI 278666 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.5531;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=17.26;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:3400,369,0 chrXI 278756 . A C 2291 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.32;MQ0=0;QD=16.60;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2324,261,0 chrXI 278762 . T C 2206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=144;Dels=0.00;FS=2.515;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;MQRankSum=-2.126;QD=15.32;ReadPosRankSum=2.937;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:3,141:144:99:2239,246,0 chrXI 278767 . T C 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=149;Dels=0.00;FS=2.444;HaplotypeScore=4.8646;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;MQRankSum=-2.231;QD=14.79;ReadPosRankSum=2.939;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:3,146:149:99:2237,246,0 chrXI 278776 . G C 2034 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=7.5428;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;QD=13.56;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2067,228,0 chrXI 278847 . C T 1996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=127;Dels=0.00;FS=3.634;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.696;QD=15.72;ReadPosRankSum=1.705;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2029,201,0 chrXI 278902 . T A 2662 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1994;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.30;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2695,282,0 chrXI 279017 . T A 5124.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.2541;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=24.75;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5124,535,0 chrXI 279067 . G T 4062.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=24.77;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4062,432,0 chrXI 279099 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.1716;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=19.84;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3393,363,0 chrXI 279188 . T C 5982.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=9.8530;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.02;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5982,651,0 chrXI 279467 . C T 6017.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=21.6392;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.26;SB=-3.593e+03 GT:AD:DP:GQ:PL 1/1:0,293:297:99:6017,646,0 chrXI 279551 . T C 4962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.744;DP=271;Dels=0.00;FS=10.090;HaplotypeScore=17.0954;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.245;QD=18.31;ReadPosRankSum=2.587;SB=-3.030e+03 GT:AD:DP:GQ:PL 1/1:3,267:271:99:4962,519,0 chrXI 279656 . A G 6347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=279;Dels=0.00;FS=3.283;HaplotypeScore=15.8967;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.528;QD=22.75;ReadPosRankSum=1.720;SB=-3.323e+03 GT:AD:DP:GQ:PL 1/1:1,278:279:99:6347,685,0 chrXI 279830 . T C 5465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=271;Dels=0.00;FS=3.059;HaplotypeScore=9.9329;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.934;QD=20.17;ReadPosRankSum=1.706;SB=-3.423e+03 GT:AD:DP:GQ:PL 1/1:1,268:271:99:5465,612,0 chrXI 279836 . T C 5283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=265;Dels=0.00;FS=9.588;HaplotypeScore=9.1575;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=0.684;QD=19.94;ReadPosRankSum=2.951;SB=-3.249e+03 GT:AD:DP:GQ:PL 1/1:3,261:265:99:5283,597,0 chrXI 280314 . T A 2055 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=27.40;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2088,210,0 chrXI 280396 . A G 99.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.463;DP=125;Dels=0.02;FS=6.180;HaplotypeScore=91.7709;MLEAC=1;MLEAF=0.500;MQ=57.06;MQ0=0;MQRankSum=1.993;QD=0.79;ReadPosRankSum=-5.078;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/1:96,25:123:99:129,0,1929 chrXI 280580 . G A 3073 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.58;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3106,318,0 chrXI 280749 . T C 2403 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.27;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2436,267,0 chrXI 280869 . T C 1483 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.45;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1516,165,0 chrXI 281006 . G A 520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.433;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=37.9490;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=1.408;QD=15.29;ReadPosRankSum=-0.325;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:1,31:34:60:553,60,0 chrXI 281172 . A G 2729 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=25.50;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2762,300,0 chrXI 281307 . C T 4708.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.90;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4708,490,0 chrXI 281393 . C T 4454.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.4551;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.32;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4454,463,0 chrXI 282240 . A G 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.8724;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.730;QD=22.32;ReadPosRankSum=1.710;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3549,399,0 chrXI 282383 . G T 1986 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2019,213,0 chrXI 282489 . A T 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=4.924;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.219;QD=24.63;ReadPosRankSum=1.692;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2225,234,0 chrXI 282515 . C A 2187 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.30;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2220,234,0 chrXI 282982 . T C 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.289;QD=24.17;ReadPosRankSum=1.660;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3504,372,0 chrXI 283059 . T C 3548.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.50;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3548,387,0 chrXI 283085 . C T 3009 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.33;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,125:129:99:3042,318,0 chrXI 283164 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3348,346,0 chrXI 283495 . C T 4262.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.2752;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.81;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4262,448,0 chrXI 283710 . C G 5370.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=10.6383;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.38;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5370,594,0 chrXI 283762 . T C 5376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.367;DP=265;Dels=0.00;FS=9.122;HaplotypeScore=22.1716;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.631;QD=20.29;ReadPosRankSum=3.341;SB=-3.247e+03 GT:AD:DP:GQ:PL 1/1:4,258:265:99:5376,582,0 chrXI 283904 . T C 6482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=270;Dels=0.00;FS=9.429;HaplotypeScore=22.0171;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.500;QD=24.01;ReadPosRankSum=2.951;SB=-3.313e+03 GT:AD:DP:GQ:PL 1/1:3,264:270:99:6482,703,0 chrXI 284248 . T C 5209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=17.0378;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.326;QD=21.52;ReadPosRankSum=1.674;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:1,238:242:99:5209,579,0 chrXI 284656 . A C 2210 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.78;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2243,243,0 chrXI 284714 . T C 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=138;Dels=0.00;FS=2.442;HaplotypeScore=7.2109;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.566;QD=20.20;ReadPosRankSum=2.949;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:3,134:138:99:2820,306,0 chrXI 284721 . A C 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.01;FS=5.772;HaplotypeScore=7.4199;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.942;QD=19.72;ReadPosRankSum=1.707;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2734,297,0 chrXI 284914 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=24.73;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3808,405,0 chrXI 285242 . A G 2953 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.07;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2986,330,0 chrXI 285383 . C T 2559 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2592,279,0 chrXI 286052 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.10;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2782,288,0 chrXI 286522 . T C 2137 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2170,240,0 chrXI 286581 . G A 2042 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2075,216,0 chrXI 287276 . C G 4112.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.1628;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.97;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4112,453,0 chrXI 287380 . C T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.68;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3623,387,0 chrXI 287715 . C T 2221 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.1189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.01;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2254,252,0 chrXI 287835 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.88;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:3009,307,0 chrXI 287921 . T C 2820 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2853,309,0 chrXI 288159 . G A 3415.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3415,357,0 chrXI 288232 . A G 2628 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=22.66;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2661,285,0 chrXI 288252 . G A 2746 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=23.27;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2779,288,0 chrXI 288285 . T C 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.263;QD=20.78;ReadPosRankSum=1.621;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2651,288,0 chrXI 288301 . G A 2582 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.66;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2615,282,0 chrXI 288369 . G A 3273.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.21;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3273,348,0 chrXI 288425 . T G 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=18.0190;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.464;QD=23.01;ReadPosRankSum=1.683;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3313,357,0 chrXI 288501 . C T 3573.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.35;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3573,387,0 chrXI 288555 . T C 2666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=126;Dels=0.00;FS=12.098;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.669;QD=21.16;ReadPosRankSum=1.299;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:3,122:126:99:2699,288,0 chrXI 288683 . C T 2760 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.44;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2793,294,0 chrXI 288741 . G A 2011 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.62;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2044,213,0 chrXI 288767 . T C 1509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=0.346;QD=16.58;ReadPosRankSum=1.655;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1542,168,0 chrXI 288774 . G A 1561 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=16.43;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1594,168,0 chrXI 288812 . A C 1820 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.96;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,110:114:99:1853,204,0 chrXI 288830 . T C 2014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=112;Dels=0.00;FS=2.894;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=0.942;QD=17.98;ReadPosRankSum=2.383;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2047,201,0 chrXI 288886 . T C 1969 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5996;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.88;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2002,216,0 chrXI 288934 . C T 2261 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.39;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2294,249,0 chrXI 289028 . C G 2830 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.4943;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.28;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2863,324,0 chrXI 289102 . C T 4021.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.52;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4021,435,0 chrXI 289419 . G A 5184.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.11;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5184,544,0 chrXI 289501 . A G 4752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=196;Dels=0.00;FS=2.987;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.783;QD=24.24;ReadPosRankSum=2.399;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4752,519,0 chrXI 289718 . C T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.02;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3457,363,0 chrXI 289750 . A G 3171 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.6223;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.39;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3204,345,0 chrXI 289859 . G C 4447.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.9077;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.92;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4447,489,0 chrXI 289966 . T C 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=175;Dels=0.00;FS=2.563;HaplotypeScore=13.5658;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.705;QD=22.31;ReadPosRankSum=2.937;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:3904,432,0 chrXI 290110 . G A 4457.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=16.4199;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.71;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4457,463,0 chrXI 290335 . T A 4562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.712;QD=25.77;ReadPosRankSum=1.634;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4562,475,0 chrXI 291152 . G A 3002 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.75;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3035,318,0 chrXI 291164 . A G 3034 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.64;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3067,342,0 chrXI 291274 . T C 1626 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=19.36;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1659,186,0 chrXI 291275 . A G 1633 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=19.21;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1666,186,0 chrXI 291288 . C T 1831 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.90;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1864,204,0 chrXI 291378 . C T 2506 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.98;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2539,270,0 chrXI 291388 . T G 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=0.475;QD=18.89;ReadPosRankSum=1.648;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2394,261,0 chrXI 291391 . C T 2481 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=19.54;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2514,270,0 chrXI 291599 . T C 4255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=1.229;QD=23.64;ReadPosRankSum=1.674;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4255,462,0 chrXI 291796 . C A 4544.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.67;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4544,481,0 chrXI 292055 . G A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.99;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3671,387,0 chrXI 292238 . T C 4792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.3426;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.698;QD=23.49;ReadPosRankSum=1.681;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4792,522,0 chrXI 292314 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.29;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3789,417,0 chrXI 292695 . A G 2719 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.58;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2752,297,0 chrXI 292788 . C T 2901 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.49;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2934,306,0 chrXI 292877 . A G 3203 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.40;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3236,342,0 chrXI 292922 . C T 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=158;Dels=0.00;FS=4.449;HaplotypeScore=5.0507;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-0.400;QD=20.83;ReadPosRankSum=1.399;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3291,333,0 chrXI 292927 . G A 3434.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=21.60;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3434,355,0 chrXI 293043 . A G 5428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=235;Dels=0.00;FS=4.827;HaplotypeScore=14.1781;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.489;QD=23.10;ReadPosRankSum=1.702;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:5428,609,0 chrXI 293400 . T C 4459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.074;DP=212;Dels=0.00;FS=15.361;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.159;QD=21.03;ReadPosRankSum=4.061;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:6,206:212:99:4459,486,0 chrXI 293821 . G A 2500 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.25;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2533,264,0 chrXI 294093 . T C 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.7706;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.220;QD=21.41;ReadPosRankSum=1.638;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2410,264,0 chrXI 294337 . T C 2453 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2486,273,0 chrXI 294837 . C T 3204 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.56;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3237,348,0 chrXI 294969 . G T 2742 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.66;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2775,288,0 chrXI 294979 . C T 2556 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.82;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2589,273,0 chrXI 295134 . A T 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=148;Dels=0.00;FS=2.839;HaplotypeScore=8.5685;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.756;QD=24.52;ReadPosRankSum=2.383;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3629,373,0 chrXI 295501 . T C 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.3877;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.742;QD=23.22;ReadPosRankSum=1.705;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2982,327,0 chrXI 295536 . G T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=24.52;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3703,393,0 chrXI 295546 . T A 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.174;QD=23.66;ReadPosRankSum=1.686;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3549,384,0 chrXI 295672 . A G 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=152;Dels=0.00;FS=3.558;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.046;QD=23.36;ReadPosRankSum=1.709;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3550,390,0 chrXI 295702 . G A 4568.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.30;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4568,490,0 chrXI 295849 . C T 4694.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.93;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4694,487,0 chrXI 296010 . C T 4939.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.30;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4939,526,0 chrXI 296208 . T C 4361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=178;Dels=0.00;FS=3.021;HaplotypeScore=10.2162;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.570;QD=24.50;ReadPosRankSum=2.408;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:4361,468,0 chrXI 297833 . C T 4464.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.6713;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.66;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4464,466,0 chrXI 297874 . C T 4453.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4453,477,0 chrXI 298085 . C T 4084.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4084,430,0 chrXI 298392 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3269,351,0 chrXI 298637 . G A 2461 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2494,261,0 chrXI 298778 . A G 2740 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.37;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2773,300,0 chrXI 298947 . A G 2456 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.13;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2489,270,0 chrXI 298955 . C A 2565 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.2869;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.52;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2598,270,0 chrXI 299533 . G C 1541 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.71;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1574,171,0 chrXI 299574 . G C 1059 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.61;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1092,120,0 chrXI 299707 . A G 2495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=106;Dels=0.00;FS=3.010;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.654;QD=23.54;ReadPosRankSum=1.699;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2528,273,0 chrXI 299878 . T C 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.030;QD=22.51;ReadPosRankSum=1.702;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2622,291,0 chrXI 300252 . C T 5424.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=15.2707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5424,565,0 chrXI 300490 . A G 3762.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.8213;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.02;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3762,423,0 chrXI 300556 . C T 3792.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.2338;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.62;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3792,394,0 chrXI 300655 . T C 2587 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.56;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2620,282,0 chrXI 300661 . G A 2559 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.50;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2592,270,0 chrXI 300808 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.38;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3654,387,0 chrXI 300931 . A G 4310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=173;Dels=0.00;FS=6.075;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-1.983;QD=24.91;ReadPosRankSum=2.925;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:4310,459,0 chrXI 301521 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.686;DP=138;Dels=0.00;FS=5.894;HaplotypeScore=9.7198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.277;QD=24.01;ReadPosRankSum=2.905;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3313,357,0 chrXI 301822 . C T 2040 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=25.50;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2073,219,0 chrXI 301850 . A C 2040 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=22.92;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2073,231,0 chrXI 302020 . T C 2439 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=22.79;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2472,279,0 chrXI 302051 . T A 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;MQRankSum=-0.495;QD=23.15;ReadPosRankSum=1.622;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2950,312,0 chrXI 302094 . A G 2160 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=21.39;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2193,246,0 chrXI 302097 . T C 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;MQRankSum=-0.280;QD=20.63;ReadPosRankSum=1.699;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2199,240,0 chrXI 302114 . A G 2180 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=21.58;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2213,237,0 chrXI 302470 . G T 3176 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.1421;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=21.61;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3209,339,0 chrXI 302490 . T A 3111 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=19.94;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3144,336,0 chrXI 302496 . T C 2878 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=18.33;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2911,321,0 chrXI 302514 . G A 2630 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.5434;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=17.19;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2663,294,0 chrXI 302601 . A G 1887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=2.909;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=-1.014;QD=23.59;ReadPosRankSum=2.388;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:2,77:80:99:1920,207,0 chrXI 302701 . T G 2091 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=20.30;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2124,237,0 chrXI 302782 . C T 805 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;QD=17.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:93:838,93,0 chrXI 302846 . C T 35.97 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=0.59;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,61:61:9:68,9,0 chrXI 302883 . A G 561 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.03;MQ0=0;QD=7.79;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:66:594,66,0 chrXI 302902 . G C 726 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;QD=10.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:84:759,84,0 chrXI 302903 . T A 737 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;QD=10.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:84:770,84,0 chrXI 302911 . C T 820 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.24;MQ0=0;QD=11.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:90:853,90,0 chrXI 303127 . G A 2842 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=22.74;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2875,306,0 chrXI 303165 . C T 2326 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=20.40;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2359,249,0 chrXI 303330 . T A 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.2883;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.569;QD=22.54;ReadPosRankSum=1.655;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3054,327,0 chrXI 303363 . C T 2816 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.0242;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.50;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2849,303,0 chrXI 303510 . C T 3980.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.19;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3980,423,0 chrXI 303647 . G A 3864.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.56;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3864,417,0 chrXI 303742 . T C 3801.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5112;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.51;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3801,411,0 chrXI 303984 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.2774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.47;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3254,339,0 chrXI 304159 . T A 2567 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.8913;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.72;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2600,276,0 chrXI 304331 . T C 2479 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.54;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2512,273,0 chrXI 304494 . T A 1897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=109;Dels=0.00;FS=6.481;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-0.817;QD=17.40;ReadPosRankSum=2.105;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:1930,231,0 chrXI 304495 . A G 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=107;Dels=0.00;FS=6.573;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.708;QD=17.86;ReadPosRankSum=2.241;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:1944,231,0 chrXI 304572 . A G 2535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=113;Dels=0.00;FS=3.046;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.120;QD=22.43;ReadPosRankSum=2.406;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2568,276,0 chrXI 304785 . T A 2537 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.06;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2570,267,0 chrXI 304901 . A T 676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.670;DP=40;Dels=0.00;FS=2.520;HaplotypeScore=3.8775;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;MQRankSum=-2.054;QD=16.90;ReadPosRankSum=2.824;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:3,37:40:78:709,78,0 chrXI 304908 . C T 508 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=15.87;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:57:541,57,0 chrXI 304925 . A T 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=63.51;MQ0=0;QD=6.60;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:51,6,0 chrXI 304926 . G T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.78;MQ0=0;QD=2.97;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:49,6,0 chrXI 304930 . A T 112.26 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;QD=2.95;SB=-4.033e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:15:145,15,0 chrXI 305086 . A T 2846 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=25.19;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2879,306,0 chrXI 305339 . A G 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.5645;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.452;QD=22.95;ReadPosRankSum=1.711;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3695,405,0 chrXI 305403 . C G 2703 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.2169;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.62;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2736,297,0 chrXI 305729 . C A 3073 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.11;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3106,330,0 chrXI 306011 . A G 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.1012;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.512;QD=21.89;ReadPosRankSum=1.689;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3481,390,0 chrXI 306098 . A G 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=133;Dels=0.00;FS=2.760;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.550;QD=21.02;ReadPosRankSum=2.375;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2828,306,0 chrXI 306260 . T C 2377 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=20.85;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2410,270,0 chrXI 306262 . T C 2342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-0.030;QD=20.37;ReadPosRankSum=1.671;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2375,261,0 chrXI 306453 . T G 3795.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=24.80;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3795,408,0 chrXI 306530 . T A 2879 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=21.65;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2912,321,0 chrXI 306545 . A G 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=149;Dels=0.00;FS=3.006;HaplotypeScore=10.3256;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=-0.173;QD=22.80;ReadPosRankSum=2.417;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3397,369,0 chrXI 306618 . C A 2751 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.83;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2784,294,0 chrXI 306678 . A G 2416 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=46.12;MQ0=0;QD=19.33;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2449,261,0 chrXI 306702 . T A 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=134;Dels=0.00;FS=3.418;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.62;MQ0=0;MQRankSum=-0.982;QD=17.14;ReadPosRankSum=1.706;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2330,243,0 chrXI 306732 . A C 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;MQRankSum=-0.175;QD=16.60;ReadPosRankSum=1.705;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2175,234,0 chrXI 306764 . G A 1854 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=17.17;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1887,201,0 chrXI 306770 . G A 1768 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=17.33;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1801,192,0 chrXI 306775 . C T 1732 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=17.32;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1765,192,0 chrXI 306863 . T G 2124 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;QD=18.63;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2157,234,0 chrXI 306879 . G A 2014 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.2019;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;QD=17.98;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2047,213,0 chrXI 307030 . C T 4631.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=25.31;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4631,501,0 chrXI 307102 . A C 3175 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=25.40;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3208,351,0 chrXI 307139 . A T 3072 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=24.19;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3105,330,0 chrXI 307166 . T G 3714.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.79;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3714,405,0 chrXI 307341 . G A 3807.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=29.9014;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.80;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3807,417,0 chrXI 307466 . C G 5397.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.8403;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.09;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,220:224:99:5397,582,0 chrXI 307722 . C T 4338.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.20;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4338,462,0 chrXI 307916 . A G 2334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=15.3411;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.658;QD=23.11;ReadPosRankSum=1.663;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2367,261,0 chrXI 307998 . C A 3770.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=24.64;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3770,402,0 chrXI 308031 . T A 4013.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=24.03;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4013,429,0 chrXI 308071 . A T 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.672;DP=139;Dels=0.00;FS=6.047;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.175;QD=22.26;ReadPosRankSum=2.862;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:3,135:139:99:3127,330,0 chrXI 308142 . A T 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.663;DP=152;Dels=0.00;FS=5.258;HaplotypeScore=15.3699;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.080;QD=24.74;ReadPosRankSum=-0.470;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3761,377,0 chrXI 308234 . A G 2849 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.64;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2882,309,0 chrXI 308236 . G A 2891 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=20.80;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2924,312,0 chrXI 308425 . T C 3637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=161;Dels=0.00;FS=3.092;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=1.173;QD=22.59;ReadPosRankSum=1.646;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3637,399,0 chrXI 308489 . G C 4543.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=18.9171;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.42;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4543,492,0 chrXI 308560 . A C 4496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=196;Dels=0.00;FS=10.906;HaplotypeScore=13.0103;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=1.067;QD=22.94;ReadPosRankSum=1.335;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:3,192:196:99:4496,495,0 chrXI 308593 . T C 4800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=205;Dels=0.00;FS=2.771;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=0.018;QD=23.41;ReadPosRankSum=2.401;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:2,200:205:99:4800,517,0 chrXI 308754 . T G 3570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=165;Dels=0.00;FS=14.076;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.130;QD=21.64;ReadPosRankSum=2.871;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:3,160:165:99:3570,381,0 chrXI 309009 . C T 5025.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.51;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5025,526,0 chrXI 309090 . T A 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=153;Dels=0.00;FS=5.270;HaplotypeScore=12.9735;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.029;QD=24.35;ReadPosRankSum=3.331;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:4,149:153:99:3726,402,0 chrXI 309188 . T C 4167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=187;Dels=0.00;FS=9.779;HaplotypeScore=9.7105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.414;QD=22.28;ReadPosRankSum=2.371;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4167,453,0 chrXI 309294 . G A 3923.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.49;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3923,412,0 chrXI 309751 . T G 2183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=102;Dels=0.00;FS=2.587;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;MQRankSum=-0.760;QD=21.40;ReadPosRankSum=2.377;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2216,240,0 chrXI 309912 . T C 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=101;Dels=0.00;FS=5.934;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.870;QD=23.58;ReadPosRankSum=2.931;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:3,98:101:99:2415,258,0 chrXI 310373 . G A 4599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.1830;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;MQRankSum=0.328;QD=24.73;ReadPosRankSum=0.047;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4599,495,0 chrXI 310552 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=20.66;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3256,348,0 chrXI 310702 . C A 3772.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.3071;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=26.01;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3772,388,0 chrXI 310798 . C A 4577.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=24.88;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4577,484,0 chrXI 310920 . G A 4617.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=23.80;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4617,484,0 chrXI 310963 . T C 3700.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.2514;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=21.51;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3700,414,0 chrXI 311054 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.150;DP=175;Dels=0.00;FS=9.112;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;MQRankSum=-1.463;QD=21.82;ReadPosRankSum=3.350;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:4,171:175:99:3819,426,0 chrXI 311103 . T C 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=150;Dels=0.00;FS=8.003;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;MQRankSum=2.122;QD=23.21;ReadPosRankSum=2.417;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3481,372,0 chrXI 311174 . T G 1114.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.746;DP=242;Dels=0.00;FS=2.200;HaplotypeScore=13.5616;MLEAC=1;MLEAF=0.500;MQ=32.06;MQ0=0;MQRankSum=-1.790;QD=4.60;ReadPosRankSum=-12.459;SB=-9.240e+02 GT:AD:DP:GQ:PL 0/1:123,118:242:99:1144,0,163 chrXI 311268 . G A 2761 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=21.91;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2794,303,0 chrXI 311278 . T C 2542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=0;MQRankSum=-1.570;QD=19.55;ReadPosRankSum=1.461;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2575,300,0 chrXI 311294 . A C 2399 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;QD=19.50;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2432,270,0 chrXI 311331 . T C 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.968;DP=121;Dels=0.00;FS=10.958;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=39.08;MQ0=0;MQRankSum=-3.077;QD=16.17;ReadPosRankSum=4.040;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:6,114:121:99:1990,222,0 chrXI 311338 . C T 2164 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=16.91;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2197,237,0 chrXI 311431 . A T 3937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=172;Dels=0.00;FS=3.782;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=1.571;QD=22.89;ReadPosRankSum=1.712;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3937,411,0 chrXI 311476 . C G 4226.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-1.134;QD=21.90;ReadPosRankSum=-0.209;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:4226,471,0 chrXI 311502 . A G 4281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=194;Dels=0.00;FS=11.804;HaplotypeScore=4.3549;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;MQRankSum=0.135;QD=22.07;ReadPosRankSum=2.881;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:4281,465,0 chrXI 311526 . T C 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.167;DP=179;Dels=0.00;FS=5.256;HaplotypeScore=12.6184;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;MQRankSum=0.122;QD=19.96;ReadPosRankSum=3.411;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:4,175:179:99:3572,399,0 chrXI 311569 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=18.73;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3334,375,0 chrXI 311590 . C T 3494.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=19.74;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3494,375,0 chrXI 311668 . A G 4530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=17.8954;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=-1.141;QD=20.78;ReadPosRankSum=1.684;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:4530,495,0 chrXI 311735 . G A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=18.76;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3358,366,0 chrXI 311744 . T G 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=4.234;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=0.301;QD=19.11;ReadPosRankSum=1.670;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3224,351,0 chrXI 311806 . C T 3332.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=20.32;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3332,346,0 chrXI 311820 . T C 3494.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.0582;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=20.31;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3494,375,0 chrXI 311851 . C T 4024.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=21.99;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4024,424,0 chrXI 311897 . A G 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=0.866;QD=19.57;ReadPosRankSum=1.709;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2930,327,0 chrXI 311898 . A G 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=147;Dels=0.00;FS=5.553;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=-0.719;QD=20.05;ReadPosRankSum=2.952;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:2980,327,0 chrXI 311975 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=15.4539;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.71;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3076,339,0 chrXI 312016 . C T 3678.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.8967;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=24.52;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3678,384,0 chrXI 312103 . C T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=25.60;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3942,414,0 chrXI 312273 . G A 3014 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.49;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3047,318,0 chrXI 312289 . C T 2971 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.85;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3004,321,0 chrXI 312361 . C T 3976.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.39;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3976,429,0 chrXI 312511 . T C 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=0.188;QD=24.60;ReadPosRankSum=2.404;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:4035,441,0 chrXI 312545 . T G 3904.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.38;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3904,420,0 chrXI 312553 . T C 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=3.035;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-1.031;QD=22.01;ReadPosRankSum=1.712;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3807,426,0 chrXI 312734 . A C 3630.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.97;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3630,402,0 chrXI 313024 . T C 3028 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.3063;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=24.03;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3061,336,0 chrXI 313063 . C T 3164 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=23.97;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3197,336,0 chrXI 313073 . A C 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.666;QD=23.86;ReadPosRankSum=1.652;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3159,345,0 chrXI 313195 . G A 3069 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=23.08;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3102,333,0 chrXI 313299 . T C 2196 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=0;QD=20.91;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2229,261,0 chrXI 313318 . G A 2043 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.05;MQ0=0;QD=21.73;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2076,228,0 chrXI 313345 . G T 1749 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.82;MQ0=0;QD=20.10;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1782,201,0 chrXI 313349 . T C 1605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=4.160;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.36;MQ0=0;MQRankSum=0.725;QD=18.66;ReadPosRankSum=1.652;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1638,189,0 chrXI 313365 . C T 1330 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=19.85;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1363,150,0 chrXI 313367 . G A 1270 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.81;MQ0=0;QD=18.14;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1303,141,0 chrXI 313486 . G A 2070 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.69;MQ0=0;QD=24.35;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2103,228,0 chrXI 313488 . T A 1949 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.13;MQ0=0;QD=23.77;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1982,228,0 chrXI 313507 . T C 1241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=11.572;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=29.07;MQ0=0;MQRankSum=-1.784;QD=19.70;ReadPosRankSum=2.293;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1274,150,0 chrXI 313513 . T G 1255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=6.714;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;MQRankSum=-1.278;QD=20.57;ReadPosRankSum=1.619;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1288,156,0 chrXI 313523 . T A 1040 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.25;MQ0=0;QD=20.80;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1073,123,0 chrXI 313544 . A C 614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.653;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.17;MQ0=0;MQRankSum=-2.653;QD=16.16;ReadPosRankSum=2.815;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:3,35:38:78:647,78,0 chrXI 313602 . G A 625 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.41;MQ0=0;QD=18.94;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:66:658,66,0 chrXI 313633 . G T 173.06 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=15.73;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:21:206,21,0 chrXI 313647 . G A 494 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;QD=26.00;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:54:527,54,0 chrXI 313671 . C T 486 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.26;MQ0=3;QD=22.09;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:54:519,54,0 chrXI 313695 . G C 468 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.26;MQ0=3;QD=21.27;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:54:501,54,0 chrXI 313868 . G T 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:50,6,0 chrXI 313869 . C G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:48,6,0 chrXI 313870 . A G 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:47,6,0 chrXI 313873 . T G 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:46,6,0 chrXI 313874 . G A 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:46,6,0 chrXI 313924 . G A 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.16;MQ0=0;QD=0.37;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,39:40:6:46,6,0 chrXI 313970 . C T 1139 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.78;MQ0=0;QD=19.31;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1172,123,0 chrXI 313985 . G A 1232 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.19;MQ0=0;QD=19.56;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1265,135,0 chrXI 313997 . T C 1604 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=21.68;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1637,180,0 chrXI 314030 . T C 2219 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;QD=21.75;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2252,243,0 chrXI 314126 . G A 2287 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.52;MQ0=0;QD=23.58;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2320,252,0 chrXI 314163 . A G 1137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=56;Dels=0.00;FS=8.351;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=34.86;MQ0=0;MQRankSum=1.225;QD=20.30;ReadPosRankSum=3.293;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:4,52:56:99:1170,132,0 chrXI 314522 . T G 72.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=9;Dels=0.00;FS=21.004;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=33.68;MQ0=0;MQRankSum=2.219;QD=8.06;ReadPosRankSum=2.219;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:4,5:9:12:105,12,0 chrXI 314523 . C A 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=34.03;MQ0=0;QD=5.00;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,7:10:9:82,9,0 chrXI 314524 . A C 122.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.944;DP=15;Dels=0.00;FS=18.543;HaplotypeScore=3.4707;MLEAC=2;MLEAF=1.00;MQ=34.03;MQ0=0;MQRankSum=2.113;QD=8.14;ReadPosRankSum=-0.085;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:3,10:15:18:155,18,0 chrXI 314694 . A G 1334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=74;Dels=0.00;FS=12.032;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;MQRankSum=-0.137;QD=18.03;ReadPosRankSum=2.905;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:3,71:74:99:1367,150,0 chrXI 314713 . C T 838 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.89;MQ0=0;QD=14.20;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:93:871,93,0 chrXI 314746 . A C 743 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.827;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=29.80;MQ0=0;MQRankSum=1.584;QD=10.61;ReadPosRankSum=1.683;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:84:776,84,0 chrXI 314749 . G A 814 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.77;MQ0=0;QD=11.15;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:90:847,90,0 chrXI 314752 . T C 772 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.64;MQ0=0;QD=10.43;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:90:805,90,0 chrXI 314758 . A G 907 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.74;MQ0=0;QD=10.93;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:940,102,0 chrXI 314765 . T C 925 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.66;MQ0=0;QD=10.88;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:958,108,0 chrXI 314766 . A G 929 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;QD=10.68;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:962,108,0 chrXI 314906 . A G 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=4.130;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.945;QD=24.04;ReadPosRankSum=1.680;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3206,351,0 chrXI 315068 . G A 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=0.845;QD=17.83;ReadPosRankSum=1.584;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:2975,318,0 chrXI 315069 . A G 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=164;Dels=0.01;FS=3.408;HaplotypeScore=3.3868;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.823;QD=17.47;ReadPosRankSum=1.667;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:2898,318,0 chrXI 315107 . G C 3724.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=19.81;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:3724,399,0 chrXI 315292 . G T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=23.42;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3536,381,0 chrXI 315326 . G T 2988 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.30;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3021,327,0 chrXI 315327 . G A 3046 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=22.56;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3079,327,0 chrXI 315617 . A G 3679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=153;Dels=0.00;FS=3.401;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.080;QD=24.05;ReadPosRankSum=1.686;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3679,399,0 chrXI 315654 . G C 3841.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=23.56;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3841,420,0 chrXI 315726 . A G 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=166;Dels=0.00;FS=2.748;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=0.350;QD=23.13;ReadPosRankSum=2.390;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3839,411,0 chrXI 315735 . G A 3498.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3909;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=23.48;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3498,364,0 chrXI 315805 . G A 3319.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=25.53;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3319,340,0 chrXI 315840 . G A 2188 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;QD=20.26;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2221,234,0 chrXI 315844 . T C 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=107;Dels=0.00;FS=9.220;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;MQRankSum=1.057;QD=19.10;ReadPosRankSum=2.403;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2077,231,0 chrXI 315867 . A G 1764 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.87;MQ0=0;QD=16.80;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1797,198,0 chrXI 315893 . G T 1530 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.99;MQ0=0;QD=14.85;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1563,171,0 chrXI 315895 . C T 1594 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=0;QD=15.33;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1627,171,0 chrXI 315903 . C T 1425 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=14.54;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1458,168,0 chrXI 315904 . T A 1455 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=14.55;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1488,168,0 chrXI 315915 . A G 1631 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=37.87;MQ0=0;QD=15.24;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:1664,177,0 chrXI 316034 . G T 2120 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=11.1860;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=22.55;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2153,225,0 chrXI 316142 . T C 1998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.227;DP=85;Dels=0.00;FS=14.382;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;MQRankSum=-1.380;QD=23.51;ReadPosRankSum=3.352;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:4,81:85:99:2031,219,0 chrXI 316198 . C T 2080 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=22.86;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2113,228,0 chrXI 316238 . A T 1416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=69.5634;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;MQRankSum=-0.939;QD=16.86;ReadPosRankSum=1.690;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1449,150,0 chrXI 316255 . C T 1181 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.7997;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;QD=14.76;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1214,126,0 chrXI 316332 . A G 1404 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;QD=15.43;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1437,156,0 chrXI 316346 . A G 1551 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=15.67;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1584,174,0 chrXI 316362 . C A 1741 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=17.24;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1774,189,0 chrXI 316511 . G A 2618 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=24.24;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2651,276,0 chrXI 316643 . C T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.10;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3442,358,0 chrXI 316707 . A G 3213.98 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.96;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3247,354,0 chrXI 316845 . A G 2471 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.76;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2504,267,0 chrXI 316891 . C G 2653 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.22;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2686,291,0 chrXI 317019 . A G 2545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.329;QD=21.03;ReadPosRankSum=1.675;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2578,288,0 chrXI 317289 . T C 4674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=199;Dels=0.00;FS=2.992;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.685;QD=23.49;ReadPosRankSum=2.425;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4674,507,0 chrXI 317370 . G A 3941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.0214;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=-0.290;QD=21.19;ReadPosRankSum=0.477;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:3941,420,0 chrXI 317375 . A G 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.687;DP=194;Dels=0.00;FS=10.972;HaplotypeScore=6.0348;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-0.410;QD=19.57;ReadPosRankSum=3.549;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:5,188:194:99:3797,414,0 chrXI 317549 . C T 3565.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=25.28;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3565,375,0 chrXI 317712 . C G 3539.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.13;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3539,378,0 chrXI 317755 . A G 3960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=175;Dels=0.00;FS=3.267;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.498;QD=22.63;ReadPosRankSum=1.712;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3960,432,0 chrXI 318402 . A G 5489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=231;Dels=0.00;FS=6.512;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.082;QD=23.76;ReadPosRankSum=2.406;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:2,226:231:99:5489,589,0 chrXI 318519 . A G 4716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.305;QD=23.23;ReadPosRankSum=1.681;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4716,525,0 chrXI 318978 . C T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.37;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3272,342,0 chrXI 319011 . G A 3221.02 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.37;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3254,363,0 chrXI 319054 . C T 3304.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.29;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3304,345,0 chrXI 319143 . T C 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.988;QD=21.80;ReadPosRankSum=1.706;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2976,327,0 chrXI 319260 . C T 3891.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.2562;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.89;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3891,406,0 chrXI 320087 . A C 5991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.293;DP=270;Dels=0.00;FS=16.984;HaplotypeScore=21.6115;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.960;QD=22.19;ReadPosRankSum=4.481;SB=-2.957e+03 GT:AD:DP:GQ:PL 1/1:7,260:270:99:5991,657,0 chrXI 320400 . A G 5617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=13.0137;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.325;QD=24.11;ReadPosRankSum=1.702;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:1,229:233:99:5617,601,0 chrXI 320565 . G A 3776.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.45;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3776,408,0 chrXI 321333 . A G 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.662;QD=20.91;ReadPosRankSum=2.415;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3023,339,0 chrXI 321626 . G T 3016 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=23.38;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3049,321,0 chrXI 321631 . T C 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;MQRankSum=-1.093;QD=22.07;ReadPosRankSum=1.705;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2902,318,0 chrXI 321646 . G A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=23.63;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3379,349,0 chrXI 321711 . C T 2296 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.7419;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=15.21;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2329,255,0 chrXI 321714 . T C 2206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9599;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=0.848;QD=14.71;ReadPosRankSum=1.708;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,144:150:99:2239,249,0 chrXI 321847 . T C 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=150;Dels=0.00;FS=3.001;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;MQRankSum=-0.909;QD=11.98;ReadPosRankSum=2.106;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:1830,201,0 chrXI 321853 . C A 2086 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.8879;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;QD=14.69;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2119,219,0 chrXI 321982 . T A 5665.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=7.4858;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=24.85;SB=-3.040e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5665,610,0 chrXI 322024 . C A 5069.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=23.25;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5069,546,0 chrXI 322047 . A C 4496.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=22.82;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4496,504,0 chrXI 322176 . T C 4236.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.39;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4236,459,0 chrXI 322442 . A G 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=123;Dels=0.00;FS=4.807;HaplotypeScore=13.1340;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.646;QD=21.58;ReadPosRankSum=1.646;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2687,294,0 chrXI 322715 . C A 2893 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2926,312,0 chrXI 322974 . C G 2108 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.08;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2141,237,0 chrXI 323019 . A T 2032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.242;QD=22.83;ReadPosRankSum=1.611;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2065,222,0 chrXI 323070 . G A 2659 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=23.95;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2692,276,0 chrXI 323187 . G A 1946 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.8006;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=17.37;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:1979,207,0 chrXI 323229 . T C 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.914;QD=20.66;ReadPosRankSum=1.705;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2677,297,0 chrXI 323380 . C T 3058 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=24.46;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3091,330,0 chrXI 323442 . C T 4133.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.0844;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.31;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4133,438,0 chrXI 323520 . C T 3345.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.23;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3345,343,0 chrXI 323565 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3235,348,0 chrXI 323640 . G A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3318,348,0 chrXI 323761 . G A 3910.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.90;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3910,412,0 chrXI 323867 . A T 3919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=162;Dels=0.00;FS=7.578;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.417;QD=24.19;ReadPosRankSum=2.283;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3919,412,0 chrXI 324286 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.217;QD=22.71;ReadPosRankSum=1.708;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3315,369,0 chrXI 324419 . G A 4462.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.4318;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.35;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4462,460,0 chrXI 324474 . C T 3915.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.3177;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.50;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3915,408,0 chrXI 324673 . A G 4754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=222;Dels=0.00;FS=3.468;HaplotypeScore=19.9543;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.079;QD=21.41;ReadPosRankSum=1.716;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:1,219:222:99:4754,534,0 chrXI 325126 . A T 2554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.882;QD=23.22;ReadPosRankSum=1.669;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2587,267,0 chrXI 325158 . C G 2229 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.6209;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.23;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2262,249,0 chrXI 325756 . G T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.23;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3431,355,0 chrXI 326131 . T C 1657 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.09;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1690,186,0 chrXI 326248 . A T 1620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.443;QD=19.29;ReadPosRankSum=1.691;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1653,183,0 chrXI 326734 . C T 6342.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=8.5743;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.15;SB=-3.200e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6342,661,0 chrXI 326759 . T G 6853.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.82;SB=-3.936e+03 GT:AD:DP:GQ:PL 1/1:0,313:314:99:6853,753,0 chrXI 326803 . A C 6967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=333;Dels=0.00;FS=2.988;HaplotypeScore=17.1679;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.430;QD=20.92;ReadPosRankSum=2.420;SB=-4.080e+03 GT:AD:DP:GQ:PL 1/1:2,330:333:99:6967,768,0 chrXI 327038 . G A 6250.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=20.9401;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.32;SB=-3.357e+03 GT:AD:DP:GQ:PL 1/1:0,278:280:99:6250,664,0 chrXI 327663 . G A 3625.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.6048;MLEAC=2;MLEAF=1.00;MQ=60.62;MQ0=0;QD=23.39;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3625,390,0 chrXI 327893 . G A 4553.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.35;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4553,487,0 chrXI 327998 . A G 6801.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=14.2285;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=23.37;SB=-2.973e+03 GT:AD:DP:GQ:PL 1/1:0,287:291:99:6801,733,0 chrXI 328028 . C G 6966.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=21.50;SB=-3.489e+03 GT:AD:DP:GQ:PL 1/1:0,323:324:99:6966,763,0 chrXI 328041 . T C 6697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=328;Dels=0.00;FS=5.903;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-1.446;QD=20.42;ReadPosRankSum=2.917;SB=-3.972e+03 GT:AD:DP:GQ:PL 1/1:3,323:328:99:6697,724,0 chrXI 328057 . C T 6184.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.76;SB=-3.757e+03 GT:AD:DP:GQ:PL 1/1:0,313:313:99:6184,661,0 chrXI 328102 . C T 5836.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=10.3688;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=21.46;SB=-3.180e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:5836,619,0 chrXI 328199 . G A 6940.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=13.6539;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.83;SB=-3.336e+03 GT:AD:DP:GQ:PL 1/1:0,303:304:99:6940,730,0 chrXI 328292 . A G 4425.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=13.4892;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=18.67;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4425,495,0 chrXI 328373 . T C 4453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=207;Dels=0.00;FS=4.331;HaplotypeScore=18.2427;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-1.480;QD=21.51;ReadPosRankSum=1.698;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4453,486,0 chrXI 328613 . T C 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=154;Dels=0.00;FS=7.474;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.811;QD=20.29;ReadPosRankSum=2.257;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3158,342,0 chrXI 328619 . A T 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=157;Dels=0.00;FS=5.718;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-1.240;QD=20.50;ReadPosRankSum=2.942;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3251,351,0 chrXI 328709 . G C 3195 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.97;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3228,351,0 chrXI 328853 . A T 3371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=143;Dels=0.00;FS=7.760;HaplotypeScore=11.1226;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.096;QD=23.57;ReadPosRankSum=2.415;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3371,360,0 chrXI 329569 . A C 3342.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.25;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3342,369,0 chrXI 329573 . T C 3324.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.91;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3324,363,0 chrXI 329624 . A G 4231.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=21.37;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4231,459,0 chrXI 329774 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=135;Dels=0.00;FS=10.157;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.293;QD=24.24;ReadPosRankSum=2.948;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:3,131:135:99:3272,354,0 chrXI 329812 . A T 3110 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=25.49;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3143,327,0 chrXI 329896 . A C 2041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=4.571;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=0.621;QD=19.07;ReadPosRankSum=1.601;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2074,225,0 chrXI 329897 . T C 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=106;Dels=0.00;FS=2.601;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=-0.452;QD=17.65;ReadPosRankSum=2.933;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:3,102:106:99:1904,210,0 chrXI 329955 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.01;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3181,327,0 chrXI 330019 . G T 3728.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.53;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3728,393,0 chrXI 330549 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.3808;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.53;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2386,261,0 chrXI 330610 . C A 2885 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=23.84;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2918,300,0 chrXI 330617 . T C 2882 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.17;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2915,318,0 chrXI 330692 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.02;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2151,228,0 chrXI 330865 . T C 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.450;QD=24.12;ReadPosRankSum=1.697;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2469,273,0 chrXI 331388 . A G 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.577;QD=21.01;ReadPosRankSum=1.670;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2386,270,0 chrXI 331582 . G A 3993.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.43;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3993,415,0 chrXI 331675 . A G 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.662;QD=22.77;ReadPosRankSum=1.709;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3393,372,0 chrXI 331906 . G A 2837 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.52;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2870,306,0 chrXI 332101 . A G 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.242;QD=24.79;ReadPosRankSum=1.611;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2165,231,0 chrXI 332454 . A G 2827 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.76;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2860,309,0 chrXI 332476 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.72;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2646,276,0 chrXI 332863 . A C 3224.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.217;DP=146;Dels=0.00;FS=3.522;HaplotypeScore=11.2896;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.540;QD=22.08;ReadPosRankSum=-1.540;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3257,333,0 chrXI 332964 . G A 3712.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3712,387,0 chrXI 333057 . C T 3286.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=23.99;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3286,339,0 chrXI 333073 . T C 3086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=147;Dels=0.00;FS=3.027;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=-2.180;QD=20.99;ReadPosRankSum=2.349;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3119,333,0 chrXI 333079 . A G 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.133;HaplotypeScore=4.3046;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-1.083;QD=20.97;ReadPosRankSum=1.684;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3074,333,0 chrXI 333397 . G A 3640.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.9665;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.76;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3640,393,0 chrXI 333556 . T C 4165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=183;Dels=0.00;FS=3.012;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.517;QD=22.76;ReadPosRankSum=2.342;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4165,453,0 chrXI 333577 . T C 3839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.371;DP=178;Dels=0.00;FS=9.059;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.339;QD=21.57;ReadPosRankSum=3.371;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:4,174:178:99:3839,414,0 chrXI 333609 . C T 4091.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.11;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4091,438,0 chrXI 333757 . A G 4716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.975;DP=201;Dels=0.00;FS=6.070;HaplotypeScore=16.5998;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.415;QD=23.46;ReadPosRankSum=2.845;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:4716,489,0 chrXI 333876 . T C 5416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=226;Dels=0.00;FS=6.934;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.168;QD=23.96;ReadPosRankSum=2.384;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:5416,600,0 chrXI 333999 . C T 3429.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.0369;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.01;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3429,366,0 chrXI 334135 . C A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.79;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3396,360,0 chrXI 334655 . A G 11408.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=460;Dels=0.00;FS=9.410;HaplotypeScore=19.4982;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.035;QD=24.80;ReadPosRankSum=2.407;SB=-4.085e+03 GT:AD:DP:GQ:PL 1/1:2,455:460:99:11408,1240,0 chrXI 334735 . C T 7448.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=25.1243;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.57;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:0,312:316:99:7448,802,0 chrXI 334980 . T C 2700 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.50;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2733,288,0 chrXI 334995 . G A 2016 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.57;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2049,219,0 chrXI 335312 . G A 2218 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.92;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2251,243,0 chrXI 335340 . C G 2485 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=25.62;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2518,276,0 chrXI 335383 . C T 2243 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=23.12;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2276,249,0 chrXI 335408 . T G 2151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.656;QD=20.68;ReadPosRankSum=1.698;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2184,243,0 chrXI 335429 . C T 2180 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.46;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2213,237,0 chrXI 335465 . G C 2898 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.00;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,134:138:99:2931,318,0 chrXI 335606 . A G 4414.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.1680;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.48;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4414,486,0 chrXI 335915 . A G 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=3.036;HaplotypeScore=14.2762;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.124;QD=21.29;ReadPosRankSum=1.671;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3641,396,0 chrXI 336012 . C T 4137.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.5725;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=24.05;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4137,427,0 chrXI 336059 . T C 3789.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=15.0855;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.53;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3789,411,0 chrXI 336133 . C T 3954.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.54;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3954,412,0 chrXI 336224 . T C 3042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=124;Dels=0.00;FS=3.962;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=-1.221;QD=24.53;ReadPosRankSum=1.704;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:3075,342,0 chrXI 336232 . G A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=25.64;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3384,360,0 chrXI 336457 . G A 2315 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.31;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2348,258,0 chrXI 336470 . G A 2478 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1329;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.48;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2511,276,0 chrXI 336540 . G A 3604.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=25.38;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3604,373,0 chrXI 336698 . G A 5587.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=10.1123;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.77;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:1,231:235:99:5587,583,0 chrXI 336849 . A G 8805.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=388;Dels=0.00;FS=10.159;HaplotypeScore=24.2305;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.184;QD=22.69;ReadPosRankSum=2.889;SB=-4.494e+03 GT:AD:DP:GQ:PL 1/1:3,384:388:99:8805,972,0 chrXI 337206 . A G 7409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=329;Dels=0.00;FS=10.475;HaplotypeScore=25.0032;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=0.256;QD=22.52;ReadPosRankSum=2.941;SB=-3.732e+03 GT:AD:DP:GQ:PL 1/1:3,323:329:99:7409,805,0 chrXI 337365 . T G 10024.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.375;DP=418;Dels=0.00;FS=8.770;HaplotypeScore=14.0951;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;MQRankSum=1.578;QD=23.98;ReadPosRankSum=3.433;SB=-4.898e+03 GT:AD:DP:GQ:PL 1/1:4,413:418:99:10024,1093,0 chrXI 337387 . T A 10105.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.974;DP=427;Dels=0.00;FS=5.866;HaplotypeScore=11.4173;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;MQRankSum=-0.507;QD=23.67;ReadPosRankSum=2.936;SB=-5.159e+03 GT:AD:DP:GQ:PL 1/1:3,423:427:99:10105,1078,0 chrXI 337501 . T A 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;DP=330;Dels=0.00;FS=26.533;HaplotypeScore=408.0225;MLEAC=1;MLEAF=0.500;MQ=41.60;MQ0=2;MQRankSum=-3.190;QD=0.09;ReadPosRankSum=3.310;SB=-6.480e+02 GT:AD:DP:GQ:PL 0/1:200,130:330:59:59,0,2150 chrXI 337504 . G T 252.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.215;DP=332;Dels=0.00;FS=30.265;HaplotypeScore=500.6314;MLEAC=1;MLEAF=0.500;MQ=40.93;MQ0=2;MQRankSum=-1.835;QD=0.76;ReadPosRankSum=-1.977;SB=-1.586e+03 GT:AD:DP:GQ:PL 0/1:126,173:332:99:282,0,1865 chrXI 337530 . T C 2347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.490;DP=261;Dels=0.00;FS=7.873;HaplotypeScore=32.2346;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=0.009;QD=8.99;ReadPosRankSum=2.085;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:21,239:261:99:2380,181,0 chrXI 337549 . G T 2439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.143;DP=281;Dels=0.05;FS=1.766;HaplotypeScore=335.6399;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.190;QD=8.68;ReadPosRankSum=0.792;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:5,262:267:99:2472,231,0 chrXI 337554 . C T 2036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.058;DP=284;Dels=0.05;FS=0.000;HaplotypeScore=311.9650;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=2.098;QD=7.17;ReadPosRankSum=0.925;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:5,265:270:99:2069,200,0 chrXI 337576 . G T 790.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.239;DP=279;Dels=0.00;FS=17.809;HaplotypeScore=444.2108;MLEAC=1;MLEAF=0.500;MQ=30.59;MQ0=0;MQRankSum=-2.760;QD=2.83;ReadPosRankSum=3.206;SB=-1.814e+03 GT:AD:DP:GQ:PL 0/1:37,242:279:99:820,0,120 chrXI 337581 . C T 1260 SnpCluster AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=296.4694;MLEAC=2;MLEAF=1.00;MQ=32.49;MQ0=0;QD=4.34;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,290:290:99:1293,141,0 chrXI 337585 . G T 875 SnpCluster AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=680.6128;MLEAC=2;MLEAF=1.00;MQ=33.72;MQ0=0;QD=2.98;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,294:294:99:908,102,0 chrXI 337660 . A G 5112.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=11.1719;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=2.432;QD=18.19;ReadPosRankSum=2.362;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:2,278:281:99:5112,558,0 chrXI 337772 . T C 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.691;DP=210;Dels=0.00;FS=6.059;HaplotypeScore=16.7571;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;MQRankSum=0.005;QD=20.18;ReadPosRankSum=2.760;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:3,202:210:99:4237,453,0 chrXI 337857 . T C 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.8421;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.330;QD=20.60;ReadPosRankSum=1.692;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3605,387,0 chrXI 337991 . C T 4720.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.6160;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.91;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4720,507,0 chrXI 338019 . A T 4387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=1.021;QD=23.71;ReadPosRankSum=1.676;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4387,463,0 chrXI 338045 . A G 3780.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=21.72;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3780,402,0 chrXI 338056 . C T 3870.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.59;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3870,403,0 chrXI 338234 . C G 4714.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.1142;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=24.94;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4714,510,0 chrXI 338730 . A T 2195 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=21.52;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2228,237,0 chrXI 338893 . G A 2330 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=0;QD=19.91;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2363,249,0 chrXI 338902 . T G 1745 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=90.0641;MLEAC=2;MLEAF=1.00;MQ=37.04;MQ0=0;QD=15.72;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:1778,201,0 chrXI 339065 . G A 3072 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.8106;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=22.26;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,134:138:99:3105,321,0 chrXI 339113 . T C 4174.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=23.58;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4174,450,0 chrXI 339180 . C T 3192 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=20.5036;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.86;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3225,339,0 chrXI 339266 . T C 4188.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.49;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4188,444,0 chrXI 339536 . A G 2313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=97;Dels=0.00;FS=3.590;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.072;QD=23.85;ReadPosRankSum=1.696;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2346,252,0 chrXI 340007 . T C 6177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=278;Dels=0.00;FS=2.792;HaplotypeScore=17.1868;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=1.147;QD=22.22;ReadPosRankSum=2.396;SB=-2.859e+03 GT:AD:DP:GQ:PL 1/1:2,275:278:99:6177,678,0 chrXI 340064 . A G 5961.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=14.2082;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.44;SB=-3.623e+03 GT:AD:DP:GQ:PL 1/1:0,278:278:99:5961,643,0 chrXI 340155 . T G 4855.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.2436;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.69;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4855,525,0 chrXI 340231 . G C 5962.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=4.1821;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=21.07;SB=-3.253e+03 GT:AD:DP:GQ:PL 1/1:0,282:283:99:5962,646,0 chrXI 340235 . A G 5955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.388;DP=287;Dels=0.00;FS=8.603;HaplotypeScore=6.5481;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-1.243;QD=20.75;ReadPosRankSum=3.431;SB=-3.261e+03 GT:AD:DP:GQ:PL 1/1:4,281:287:99:5955,646,0 chrXI 340285 . G C 4199.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=19.4773;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=19.53;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4199,474,0 chrXI 340583 . T C 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.9476;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.456;QD=21.67;ReadPosRankSum=1.687;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3337,372,0 chrXI 340770 . T A 4520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=0.356;QD=20.55;ReadPosRankSum=1.716;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4520,504,0 chrXI 340783 . C T 4316.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.65;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4316,457,0 chrXI 340811 . T C 3734.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.55;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3734,405,0 chrXI 341413 . C T 3148 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=25.18;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3181,333,0 chrXI 341641 . G A 4450.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.18;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4450,466,0 chrXI 341753 . A T 5147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=217;Dels=0.00;FS=9.543;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.223;QD=23.72;ReadPosRankSum=2.392;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:5147,547,0 chrXI 342269 . G C 3177 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.8682;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=23.71;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3210,351,0 chrXI 342298 . G A 2312 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.59;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2345,258,0 chrXI 342308 . G C 2288 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=19.90;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2321,252,0 chrXI 342529 . C T 2478 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=23.83;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2511,258,0 chrXI 342532 . A C 2187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.658;QD=21.87;ReadPosRankSum=1.628;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2220,246,0 chrXI 342780 . A G 748 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.96;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:87:781,87,0 chrXI 342813 . A G 1549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=8.155;HaplotypeScore=4.2357;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=-1.569;QD=18.22;ReadPosRankSum=1.691;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1582,171,0 chrXI 342972 . A G 2477 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=22.72;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2510,285,0 chrXI 343095 . A C 2993 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.71;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,155:160:99:3026,342,0 chrXI 343212 . G A 4364.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.61;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4364,465,0 chrXI 343231 . C G 4386.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.93;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4386,480,0 chrXI 343371 . A G 3887.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.7330;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.72;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:3887,429,0 chrXI 343477 . C T 3459.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=24.71;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3459,363,0 chrXI 343519 . T C 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.385;DP=125;Dels=0.02;FS=8.947;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-0.022;QD=18.83;ReadPosRankSum=3.385;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:4,117:123:99:2387,261,0 chrXI 343522 . T C 2320 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=18.56;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2353,252,0 chrXI 343772 . C T 4404.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=24.20;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4404,471,0 chrXI 343793 . C T 4695.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.24;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4695,501,0 chrXI 343926 . T C 4041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=3.411;HaplotypeScore=5.1410;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-0.442;QD=19.71;ReadPosRankSum=1.698;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4041,435,0 chrXI 343932 . G A 3838.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=19.38;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3838,408,0 chrXI 343968 . T C 3655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=3.793;HaplotypeScore=12.7967;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=1.000;QD=18.84;ReadPosRankSum=1.661;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3655,399,0 chrXI 344089 . T C 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.747;DP=180;Dels=0.00;FS=9.941;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.511;QD=20.39;ReadPosRankSum=2.961;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:3,176:180:99:3671,393,0 chrXI 344106 . T C 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-1.229;QD=20.53;ReadPosRankSum=1.713;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3674,405,0 chrXI 344217 . G A 4111.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.62;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4111,438,0 chrXI 344242 . G A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.25;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3358,348,0 chrXI 344249 . C A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7198;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=21.16;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3365,360,0 chrXI 344412 . A G 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=29.8585;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-1.321;QD=19.32;ReadPosRankSum=1.714;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,193:197:99:3806,423,0 chrXI 344465 . T C 5441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=227;Dels=0.00;FS=2.843;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-1.315;QD=23.97;ReadPosRankSum=2.406;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:2,223:227:99:5441,591,0 chrXI 344684 . C T 4186.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.2889;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=21.47;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4186,439,0 chrXI 344692 . C T 3709.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.6899;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=19.94;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3709,399,0 chrXI 344705 . G C 3282.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=19.89;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3282,354,0 chrXI 344789 . T C 3669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=3.500;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.346;QD=24.14;ReadPosRankSum=1.686;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3669,393,0 chrXI 344939 . G C 3514.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.43;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3514,390,0 chrXI 344980 . G T 2955 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.45;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2988,312,0 chrXI 345379 . C A 4299.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.71;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4299,448,0 chrXI 345623 . T C 3871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.205;DP=171;Dels=0.00;FS=6.519;HaplotypeScore=17.7198;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.840;QD=22.64;ReadPosRankSum=2.392;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3871,426,0 chrXI 347287 . T G 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=147;Dels=0.00;FS=2.566;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.303;QD=25.49;ReadPosRankSum=2.952;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:3,143:147:99:3747,408,0 chrXI 347619 . A T 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=137;Dels=0.00;FS=3.043;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.606;QD=21.69;ReadPosRankSum=2.377;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3005,327,0 chrXI 347878 . A G 3318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.2790;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.537;QD=23.20;ReadPosRankSum=1.708;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3318,360,0 chrXI 348001 . G T 3701.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.35;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3701,385,0 chrXI 348083 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.64;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3381,351,0 chrXI 348276 . T C 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=127;Dels=0.00;FS=4.569;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.825;QD=22.21;ReadPosRankSum=1.705;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2854,309,0 chrXI 348351 . C T 2704 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.92;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2737,294,0 chrXI 348711 . C T 3704.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.6316;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.86;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3704,390,0 chrXI 348900 . G A 3996.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.22;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3996,415,0 chrXI 349155 . T C 4401.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.7052;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.04;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4401,489,0 chrXI 349225 . G C 14.91 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.156;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=18.5256;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=1.926;QD=0.08;ReadPosRankSum=3.263;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:5,172:177:6:46,6,0 chrXI 349504 . A G 3127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.0664;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.892;QD=22.82;ReadPosRankSum=1.706;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,131:137:99:3160,351,0 chrXI 349875 . C T 4292.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.1983;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.39;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4292,445,0 chrXI 350055 . C T 3809.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.66;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3809,414,0 chrXI 350071 . A G 3661.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.47;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3661,393,0 chrXI 350428 . A G 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=3.101;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;MQRankSum=-0.060;QD=20.57;ReadPosRankSum=1.684;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3016,333,0 chrXI 350452 . T C 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=148;Dels=0.00;FS=12.255;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;MQRankSum=0.089;QD=17.75;ReadPosRankSum=2.952;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:3,144:148:99:2660,291,0 chrXI 350464 . A T 2851 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;QD=18.16;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2884,300,0 chrXI 350473 . A G 2638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=164;Dels=0.00;FS=5.620;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;MQRankSum=-1.742;QD=16.09;ReadPosRankSum=2.957;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:2671,291,0 chrXI 350485 . T C 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=3.869;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;MQRankSum=-0.844;QD=16.78;ReadPosRankSum=1.710;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2651,285,0 chrXI 350635 . T C 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=4.116;HaplotypeScore=8.8634;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-1.302;QD=24.68;ReadPosRankSum=1.705;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3241,348,0 chrXI 350701 . T G 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=3.043;HaplotypeScore=10.4992;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=0.247;QD=23.48;ReadPosRankSum=1.706;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3156,339,0 chrXI 350761 . C A 2945 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.65;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2978,321,0 chrXI 350788 . C T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.72;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3312,343,0 chrXI 351078 . T A 2123 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2156,228,0 chrXI 351164 . A C 2051 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.31;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2084,225,0 chrXI 351443 . C A 6362.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=23.83;SB=-3.079e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:6362,688,0 chrXI 351468 . G A 6667.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.64;SB=-3.221e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:6667,697,0 chrXI 351518 . A G 5339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=262;Dels=0.00;FS=3.414;HaplotypeScore=14.2208;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.568;QD=20.38;ReadPosRankSum=1.705;SB=-3.057e+03 GT:AD:DP:GQ:PL 1/1:1,258:262:99:5339,603,0 chrXI 352511 . T C 3973.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.45;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3973,438,0 chrXI 352727 . C T 3507.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.7141;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.23;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3507,369,0 chrXI 352967 . C G 3673.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.5416;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.25;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3673,408,0 chrXI 353214 . A C 3454.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.00;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3454,369,0 chrXI 353277 . T C 3641.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3641,402,0 chrXI 353786 . G C 2672 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.09;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,129:133:99:2705,300,0 chrXI 354092 . T C 2819 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2852,321,0 chrXI 354551 . T C 4276.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4276,477,0 chrXI 355187 . A G 198.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.316;DP=111;Dels=0.00;FS=6.776;HaplotypeScore=85.3717;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=3.214;QD=1.79;ReadPosRankSum=-5.805;SB=2.49 GT:AD:DP:GQ:PL 1/1:92,19:111:12:231,12,0 chrXI 355203 . A C 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=120;Dels=0.00;FS=3.402;HaplotypeScore=13.1932;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=-1.075;QD=20.28;ReadPosRankSum=1.702;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:2,116:120:99:2467,267,0 chrXI 355411 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.54;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3341,363,0 chrXI 355412 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=19.22;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3261,354,0 chrXI 355474 . T C 3983.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=20.22;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3983,438,0 chrXI 355514 . G A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=21.35;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3310,348,0 chrXI 355535 . C G 2883 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=18.02;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,155:160:99:2916,318,0 chrXI 355543 . A G 2699 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=17.64;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2732,303,0 chrXI 355746 . C A 3352.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=21.63;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3352,354,0 chrXI 355752 . C G 3117 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=19.12;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3150,351,0 chrXI 355855 . G A 3514.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=20.08;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3514,381,0 chrXI 355989 . G A 3464.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=20.99;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3464,369,0 chrXI 356064 . G C 3529.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=44.76;MQ0=0;QD=21.01;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3529,390,0 chrXI 356086 . A G 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.37;MQ0=0;MQRankSum=-1.311;QD=20.41;ReadPosRankSum=1.713;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3694,411,0 chrXI 356125 . T G 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=11.565;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;MQRankSum=-1.170;QD=17.01;ReadPosRankSum=2.421;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:2907,315,0 chrXI 356171 . G A 2094 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=0;QD=14.96;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2127,225,0 chrXI 356199 . A G 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=134;Dels=0.00;FS=7.404;HaplotypeScore=4.5020;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;MQRankSum=-1.544;QD=17.38;ReadPosRankSum=2.394;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2362,255,0 chrXI 356204 . C T 2288 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=17.33;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2321,246,0 chrXI 356211 . G T 2368 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=17.16;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2401,258,0 chrXI 356276 . C T 2500 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=23.81;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2533,270,0 chrXI 356335 . T G 1873 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=19.72;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1906,210,0 chrXI 356343 . T C 1776 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;QD=19.96;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1809,195,0 chrXI 356360 . G C 1794 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=18.69;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1827,198,0 chrXI 356676 . T C 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.653;DP=165;Dels=0.00;FS=6.089;HaplotypeScore=6.6318;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.762;QD=16.64;ReadPosRankSum=2.860;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:2779,303,0 chrXI 356841 . C T 8195.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=39.1397;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.89;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,343:343:99:8195,871,0 chrXI 356876 . A G 8276.01 PASS AC=2;AF=1.00;AN=2;DP=360;Dels=0.00;FS=0.000;HaplotypeScore=14.2876;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.99;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,356:360:99:8276,942,0 chrXI 357380 . T C 9424.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.377;DP=410;Dels=0.00;FS=18.253;HaplotypeScore=21.6235;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.142;QD=22.99;ReadPosRankSum=3.381;SB=-3.770e+03 GT:AD:DP:GQ:PL 1/1:4,405:410:99:9424,1027,0 chrXI 357675 . A G 5225.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=17.6483;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.59;SB=-3.090e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5225,585,0 chrXI 357864 . C G 3113 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.03;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3146,354,0 chrXI 357892 . C T 3388.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.74;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3388,351,0 chrXI 358024 . A C 2062 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6233;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;QD=21.71;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2095,231,0 chrXI 358428 . C A 1361 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.04;FS=0.000;HaplotypeScore=19.9667;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=12.04;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:1394,147,0 chrXI 358489 . C T 2020 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.1868;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.61;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2053,228,0 chrXI 358714 . G A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.28;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3283,348,0 chrXI 358834 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.54;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3559,375,0 chrXI 359134 . T C 3173 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.59;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3206,357,0 chrXI 359142 . T C 3016 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.24;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3049,342,0 chrXI 359850 . T C 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-1.151;QD=21.70;ReadPosRankSum=1.665;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3363,363,0 chrXI 359854 . G A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.94;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3423,357,0 chrXI 359874 . A G 2666 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.60;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2699,297,0 chrXI 360035 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=162;Dels=0.00;FS=4.505;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.702;QD=21.17;ReadPosRankSum=1.710;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,157:162:99:3430,381,0 chrXI 360073 . C T 3624.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=24.82;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3624,387,0 chrXI 360238 . G C 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.732;QD=23.15;ReadPosRankSum=1.112;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:1,133:138:99:3228,351,0 chrXI 360304 . G A 3615.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3615,376,0 chrXI 360687 . T C 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=145;Dels=0.00;FS=6.358;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-0.500;QD=19.46;ReadPosRankSum=2.314;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2854,312,0 chrXI 360713 . G C 2961 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=19.87;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2994,321,0 chrXI 360734 . G A 2829 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.6665;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=19.51;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2862,300,0 chrXI 360927 . C T 2560 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=20.81;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2593,273,0 chrXI 360932 . C T 2569 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=21.59;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2602,276,0 chrXI 360940 . C T 2105 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=19.49;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2138,222,0 chrXI 361015 . T A 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.9747;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=1.326;QD=21.82;ReadPosRankSum=1.647;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3535,381,0 chrXI 361052 . G A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.6903;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.19;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3373,348,0 chrXI 361298 . A G 3871.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.6224;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.32;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3871,426,0 chrXI 361385 . T C 3093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=5.229;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.671;QD=17.98;ReadPosRankSum=1.651;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3126,339,0 chrXI 361475 . T C 3122 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=20.54;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3155,339,0 chrXI 361482 . T C 3096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.751;DP=154;Dels=0.00;FS=16.841;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-0.765;QD=20.10;ReadPosRankSum=3.721;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:5,149:154:99:3129,336,0 chrXI 361673 . A G 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=-0.379;QD=21.03;ReadPosRankSum=1.597;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2725,291,0 chrXI 361682 . G A 2872 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=22.61;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2905,303,0 chrXI 361703 . G A 2913 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=22.24;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2946,306,0 chrXI 361769 . T C 2444 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.63;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2477,270,0 chrXI 361800 . T C 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=13.4414;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=1.311;QD=22.69;ReadPosRankSum=1.700;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2484,270,0 chrXI 361878 . A C 3514.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=24.75;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3514,375,0 chrXI 362017 . A C 4339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=4.268;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.213;QD=25.08;ReadPosRankSum=1.671;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:4339,468,0 chrXI 362101 . T C 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=0.000;QD=21.12;ReadPosRankSum=1.674;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3780,420,0 chrXI 362114 . T C 4051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=192;Dels=0.00;FS=2.865;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=-0.761;QD=21.10;ReadPosRankSum=2.424;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4051,444,0 chrXI 362157 . T C 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=212;Dels=0.00;FS=2.804;HaplotypeScore=6.0158;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=-0.761;QD=19.39;ReadPosRankSum=2.426;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:2,206:212:99:4110,447,0 chrXI 362170 . G T 4014.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;QD=18.58;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4014,426,0 chrXI 362171 . A G 3930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=215;Dels=0.00;FS=3.547;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;MQRankSum=-1.281;QD=18.28;ReadPosRankSum=1.700;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:3930,426,0 chrXI 362231 . T C 3862.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.1470;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=18.30;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,206:210:99:3862,426,0 chrXI 362247 . C T 4132.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.0454;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=20.35;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4132,444,0 chrXI 362299 . G A 3997.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=21.84;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3997,426,0 chrXI 362322 . A G 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-1.487;QD=22.96;ReadPosRankSum=1.713;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4271,456,0 chrXI 362657 . A G 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.042;HaplotypeScore=8.3294;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=0.037;QD=22.04;ReadPosRankSum=1.707;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3097,336,0 chrXI 362665 . G A 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.762;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.7124;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=-0.873;QD=20.89;ReadPosRankSum=-1.649;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2707,270,0 chrXI 363203 . C T 3460.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.6038;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.49;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3460,372,0 chrXI 363372 . T C 3568.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.4644;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.11;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3568,384,0 chrXI 363449 . T C 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=143;Dels=0.00;FS=2.978;HaplotypeScore=17.1546;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.194;QD=22.10;ReadPosRankSum=1.107;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:3194,360,0 chrXI 363812 . G C 5467.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=10.4608;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.46;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5467,594,0 chrXI 363953 . T C 6210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=27.1426;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.090;QD=22.50;ReadPosRankSum=1.719;SB=-3.223e+03 GT:AD:DP:GQ:PL 1/1:1,274:276:99:6210,693,0 chrXI 364133 . C T 4898.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.00;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,206:213:99:4898,520,0 chrXI 364194 . C T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.53;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3509,375,0 chrXI 364335 . A G 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=0.000;QD=21.80;ReadPosRankSum=1.687;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1690,180,0 chrXI 364367 . G A 1125 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=22.50;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1158,123,0 chrXI 364384 . T C 1224 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=19.74;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1257,135,0 chrXI 364488 . G A 1595 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=57.4374;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=18.76;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1628,183,0 chrXI 364489 . G A 1741 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=57.4374;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=20.48;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1774,183,0 chrXI 364520 . T C 1595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=0.480;QD=15.95;ReadPosRankSum=0.455;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1628,180,0 chrXI 364568 . T C 1682 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.62;MQ0=0;QD=14.13;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1715,189,0 chrXI 364596 . T A 2400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;MQRankSum=0.329;QD=15.69;ReadPosRankSum=2.385;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2433,261,0 chrXI 364605 . C T 2282 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;QD=14.35;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:2315,240,0 chrXI 364621 . G A 2198 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=14.27;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:2231,237,0 chrXI 364623 . C T 2170 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=14.28;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2203,237,0 chrXI 364711 . A T 4343.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=22.50;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4343,477,0 chrXI 364928 . G A 5506.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.01;FS=0.000;HaplotypeScore=12.7350;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=23.63;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5506,571,0 chrXI 364951 . T G 4738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=4.3146;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=1.320;QD=20.87;ReadPosRankSum=1.702;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:4738,508,0 chrXI 364965 . A G 4461.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=6.6043;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=20.00;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:4461,486,0 chrXI 365043 . C T 4811.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.80;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4811,519,0 chrXI 365138 . A G 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-1.264;QD=22.59;ReadPosRankSum=2.378;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4631,510,0 chrXI 365167 . C A 4339.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.8048;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=22.48;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4339,483,0 chrXI 365209 . G A 3711.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=21.70;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3711,393,0 chrXI 365224 . T C 3713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=5.969;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=-0.313;QD=22.37;ReadPosRankSum=1.669;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3713,405,0 chrXI 365364 . A C 2472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-0.427;QD=20.95;ReadPosRankSum=1.303;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2505,279,0 chrXI 365381 . A G 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=117;Dels=0.00;FS=4.624;HaplotypeScore=8.7707;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-1.553;QD=20.04;ReadPosRankSum=1.672;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2378,267,0 chrXI 365453 . C G 3331.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.66;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3331,375,0 chrXI 365859 . G A 4709.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=25.05;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4709,496,0 chrXI 365899 . A C 4458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=197;Dels=0.00;FS=3.032;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.278;QD=22.63;ReadPosRankSum=2.374;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:2,193:197:99:4458,501,0 chrXI 365937 . G A 4653.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.9090;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.86;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4653,498,0 chrXI 365994 . C A 4520.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=25.39;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4520,469,0 chrXI 366045 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.4825;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.21;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3687,405,0 chrXI 366064 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.93;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3853,400,0 chrXI 366156 . A G 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=167;Dels=0.00;FS=2.946;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.155;QD=19.66;ReadPosRankSum=2.390;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:3284,357,0 chrXI 366174 . G C 2992 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=18.02;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3025,333,0 chrXI 366213 . C T 3661.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.7898;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.66;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3661,390,0 chrXI 366486 . T C 4478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=17.9613;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.393;QD=21.53;ReadPosRankSum=1.715;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4478,498,0 chrXI 366579 . C T 4459.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=5.2664;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=18.05;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:4459,472,0 chrXI 366581 . T C 4175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=247;Dels=0.00;FS=5.649;HaplotypeScore=6.9492;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=0.324;QD=16.90;ReadPosRankSum=2.939;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:3,242:247:99:4175,462,0 chrXI 366681 . A C 5242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=241;Dels=0.00;FS=3.698;HaplotypeScore=21.4907;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.094;QD=21.75;ReadPosRankSum=1.689;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:1,238:241:99:5242,591,0 chrXI 366732 . A C 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=214;Dels=0.00;FS=2.980;HaplotypeScore=11.5678;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.767;QD=16.38;ReadPosRankSum=2.426;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:2,211:214:99:3505,384,0 chrXI 366804 . T C 4561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.332;DP=243;Dels=0.00;FS=16.485;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;MQRankSum=-0.757;QD=18.77;ReadPosRankSum=3.410;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:4,239:243:99:4561,510,0 chrXI 366808 . T C 4681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=242;Dels=0.00;FS=12.581;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.234;QD=19.34;ReadPosRankSum=2.971;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:3,237:242:99:4681,498,0 chrXI 366840 . C T 5381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.360;DP=263;Dels=0.00;FS=4.389;HaplotypeScore=13.7839;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.936;QD=20.46;ReadPosRankSum=1.719;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:1,260:263:99:5381,556,0 chrXI 366915 . C T 4381.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.4059;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.94;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4381,468,0 chrXI 366957 . C T 4520.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.9220;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.94;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4520,472,0 chrXI 366981 . G A 4535.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.14;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4535,486,0 chrXI 367128 . A T 5092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=205;Dels=0.00;FS=7.532;HaplotypeScore=10.0625;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.968;QD=24.84;ReadPosRankSum=0.427;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:5092,535,0 chrXI 367251 . A G 4111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.694;QD=22.34;ReadPosRankSum=1.713;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:1,180:184:99:4111,456,0 chrXI 367440 . C T 3412.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.60;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3412,372,0 chrXI 367533 . C T 2974 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=24.18;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3007,321,0 chrXI 367554 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=23.36;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3163,339,0 chrXI 367626 . T C 2769 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.98;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2802,318,0 chrXI 367698 . G A 2697 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.86;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2730,300,0 chrXI 367701 . A G 2628 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=22.66;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2661,291,0 chrXI 367753 . A G 1706 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;QD=17.96;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1739,192,0 chrXI 367768 . C G 1660 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;QD=17.47;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1693,183,0 chrXI 367788 . C T 1660 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=16.77;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1693,186,0 chrXI 367790 . G A 1784 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=18.20;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1817,186,0 chrXI 367833 . A T 2088 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=19.51;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2121,219,0 chrXI 367941 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=22.69;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2983,327,0 chrXI 367950 . T C 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=148;Dels=0.00;FS=2.926;HaplotypeScore=4.4169;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=0.075;QD=20.63;ReadPosRankSum=2.416;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3086,336,0 chrXI 368071 . C T 3503.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.38;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3503,363,0 chrXI 368145 . C T 3573.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.20;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3573,378,0 chrXI 368193 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.615;QD=21.55;ReadPosRankSum=1.710;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3340,366,0 chrXI 368244 . G A 2924 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.8297;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.59;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:2957,309,0 chrXI 368278 . T C 3526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=162;Dels=0.00;FS=2.957;HaplotypeScore=14.3295;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.736;QD=21.77;ReadPosRankSum=2.389;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3526,387,0 chrXI 368313 . T C 4312.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.56;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4312,465,0 chrXI 368525 . G A 4739.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.70;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4739,490,0 chrXI 368904 . G A 7083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.605;DP=330;Dels=0.00;FS=3.518;HaplotypeScore=22.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.46;ReadPosRankSum=-0.542;SB=-3.868e+03 GT:AD:DP:GQ:PL 1/1:1,328:330:99:7083,733,0 chrXI 368997 . T C 7452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=318;Dels=0.00;FS=5.856;HaplotypeScore=15.1541;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.060;QD=23.43;ReadPosRankSum=2.933;SB=-3.542e+03 GT:AD:DP:GQ:PL 1/1:3,313:318:99:7452,814,0 chrXI 369034 . C T 6367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.978;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=22.1318;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.080;QD=23.07;ReadPosRankSum=1.489;SB=-3.460e+03 GT:AD:DP:GQ:PL 1/1:1,270:276:99:6367,645,0 chrXI 369361 . G A 4743.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.2518;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.66;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4743,490,0 chrXI 369378 . G A 4296.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.1474;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.85;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4296,448,0 chrXI 369450 . G A 5794.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.65;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5794,610,0 chrXI 369689 . A T 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=3.118;HaplotypeScore=15.8243;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.401;QD=20.63;ReadPosRankSum=1.711;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3384,357,0 chrXI 369878 . C T 5266.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.32;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5266,550,0 chrXI 370529 . A T 4546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.660;QD=24.98;ReadPosRankSum=1.675;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4546,466,0 chrXI 370565 . A C 4425.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=15.8087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4425,477,0 chrXI 370652 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.7722;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.89;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3721,408,0 chrXI 370874 . A G 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.533;QD=21.90;ReadPosRankSum=1.710;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3416,375,0 chrXI 371007 . G A 3824.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.0160;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.16;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3824,414,0 chrXI 371456 . A T 1775 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=75.8109;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=16.59;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1808,195,0 chrXI 371503 . A G 1999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=125;Dels=0.01;FS=6.793;HaplotypeScore=36.5269;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.307;QD=15.99;ReadPosRankSum=2.410;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2032,225,0 chrXI 371603 . C T 3225.28 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=24.07;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3258,345,0 chrXI 371802 . C T 4600.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.7101;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.01;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4600,487,0 chrXI 371814 . A C 4408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=204;Dels=0.00;FS=3.119;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=1.186;QD=21.61;ReadPosRankSum=1.715;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4408,486,0 chrXI 372140 . T G 3117 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.24;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3150,339,0 chrXI 372141 . G A 3217.04 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.89;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3250,339,0 chrXI 372417 . A G 2996 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.70;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3029,327,0 chrXI 372443 . C T 2646 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.87;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2679,285,0 chrXI 372458 . A G 2557 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.04;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2590,279,0 chrXI 372830 . G A 3676.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.01;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3676,384,0 chrXI 373793 . T C 5276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=231;Dels=0.00;FS=5.430;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.222;QD=22.84;ReadPosRankSum=2.961;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:3,228:231:99:5276,582,0 chrXI 373917 . G T 5832.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.40;SB=-3.325e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5832,610,0 chrXI 374941 . C G 4851.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.01;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4851,525,0 chrXI 375111 . C A 5016.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=24.71;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5016,535,0 chrXI 375794 . A G 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=132;Dels=0.00;FS=2.979;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.388;QD=23.90;ReadPosRankSum=2.412;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3188,342,0 chrXI 376508 . T C 5093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.667;DP=209;Dels=0.00;FS=6.040;HaplotypeScore=18.0399;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.097;QD=24.37;ReadPosRankSum=2.947;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:3,205:209:99:5093,543,0 chrXI 376721 . A G 4670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=197;Dels=0.00;FS=3.016;HaplotypeScore=10.4904;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.710;QD=23.71;ReadPosRankSum=2.425;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:4670,519,0 chrXI 376913 . A C 4009.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.58;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4009,438,0 chrXI 377297 . T C 3616.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=159;Dels=0.00;FS=2.765;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.086;QD=22.74;ReadPosRankSum=2.372;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3616,396,0 chrXI 377373 . A G 4461.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.73;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4461,480,0 chrXI 377685 . G A 2720 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.6438;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.29;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2753,294,0 chrXI 377732 . T C 3371.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.79;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3371,372,0 chrXI 377774 . C T 3490.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.75;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3490,378,0 chrXI 377843 . G A 3160 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3193,336,0 chrXI 377954 . A C 3380.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.61;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:3380,381,0 chrXI 377958 . T C 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=168;Dels=0.00;FS=2.888;HaplotypeScore=5.9062;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.655;QD=20.11;ReadPosRankSum=2.405;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3378,366,0 chrXI 378011 . G A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.33;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3496,369,0 chrXI 378242 . T C 3323.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.24;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3323,366,0 chrXI 378534 . G A 3914.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.25;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3914,409,0 chrXI 378856 . T C 2425 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=22.88;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2458,267,0 chrXI 378865 . G A 2259 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=21.93;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2292,246,0 chrXI 378899 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=22.17;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1718,183,0 chrXI 378901 . T G 1580 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=20.79;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1613,183,0 chrXI 378962 . T C 1417 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=18.89;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1450,159,0 chrXI 379169 . A G 338 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.83;MQ0=0;QD=4.17;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:39:371,39,0 chrXI 379182 . T C 370 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.182;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.08;MQ0=0;MQRankSum=-0.254;QD=4.02;ReadPosRankSum=2.396;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:2,90:92:42:403,42,0 chrXI 379202 . G A 584 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;QD=5.90;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,99:99:63:617,63,0 chrXI 379205 . G A 557 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.85;MQ0=0;QD=5.80;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,96:96:63:590,63,0 chrXI 379215 . T C 751 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=40.07;MQ0=0;MQRankSum=-0.943;QD=7.44;ReadPosRankSum=1.698;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,100:101:84:784,84,0 chrXI 379283 . G A 2470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=7.747;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;MQRankSum=-0.014;QD=19.76;ReadPosRankSum=1.677;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2503,243,0 chrXI 379287 . C G 2561 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=18.83;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2594,291,0 chrXI 379301 . A G 3073 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=19.57;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3106,348,0 chrXI 379495 . G T 4752.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=24.00;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4752,505,0 chrXI 379537 . A G 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=170;Dels=0.00;FS=2.976;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;MQRankSum=0.195;QD=21.86;ReadPosRankSum=2.406;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3716,423,0 chrXI 379628 . T A 4505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-1.480;QD=21.87;ReadPosRankSum=1.682;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4505,483,0 chrXI 379650 . C T 4105.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=18.57;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4105,430,0 chrXI 379655 . A T 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=228;Dels=0.00;FS=7.723;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;MQRankSum=1.696;QD=17.50;ReadPosRankSum=2.396;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:2,226:228:99:3991,429,0 chrXI 380521 . C T 4386.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.8356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4386,457,0 chrXI 380602 . C T 3418.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.64;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3418,360,0 chrXI 380707 . A C 4574.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.1146;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.98;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4574,507,0 chrXI 381019 . C A 8875.01 filter AC=2;AF=1.00;AN=2;DP=385;Dels=0.00;FS=0.000;HaplotypeScore=17.9849;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.05;SB=-3.503e+03 GT:AD:DP:GQ:PL 1/1:0,385:385:99:8875,940,0 chrXI 381058 . G A 9482.01 filter AC=2;AF=1.00;AN=2;DP=392;Dels=0.00;FS=0.000;HaplotypeScore=22.8614;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.19;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:0,392:392:99:9482,1018,0 chrXI 381254 . G A 4846.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=19.0682;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.44;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4846,511,0 chrXI 381316 . A G 6358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=270;Dels=0.00;FS=3.043;HaplotypeScore=13.5978;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.180;QD=23.55;ReadPosRankSum=1.719;SB=-3.561e+03 GT:AD:DP:GQ:PL 1/1:1,269:270:99:6358,691,0 chrXI 381465 . C A 5988.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.01;FS=0.000;HaplotypeScore=14.2749;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.34;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:0,261:265:99:5988,625,0 chrXI 381640 . T C 7227.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=343;Dels=0.00;FS=5.892;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-1.974;QD=21.07;ReadPosRankSum=2.956;SB=-3.865e+03 GT:AD:DP:GQ:PL 1/1:3,340:343:99:7227,786,0 chrXI 381664 . C T 8283.01 filter AC=2;AF=1.00;AN=2;DP=384;Dels=0.00;FS=0.000;HaplotypeScore=6.4673;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.57;SB=-4.502e+03 GT:AD:DP:GQ:PL 1/1:0,382:384:99:8283,868,0 chrXI 381721 . A G 7699.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=373;Dels=0.00;FS=6.714;HaplotypeScore=37.1687;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-0.155;QD=20.64;ReadPosRankSum=2.417;SB=-4.410e+03 GT:AD:DP:GQ:PL 1/1:2,370:373:99:7699,844,0 chrXI 382357 . C T 2657 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.3897;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=17.48;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2690,288,0 chrXI 382482 . C G 1538 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.520;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=0;MQRankSum=-0.792;QD=16.54;ReadPosRankSum=3.688;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,88:93:85:1571,85,0 chrXI 382484 . A G 1501 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.962;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=0;MQRankSum=-0.792;QD=16.14;ReadPosRankSum=2.819;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,88:93:83:1534,83,0 chrXI 382486 . T G 1501 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.797;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=0;MQRankSum=-0.792;QD=16.14;ReadPosRankSum=-0.792;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,88:93:78:1534,78,0 chrXI 382500 . G A 1633 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.430;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=0;MQRankSum=-0.792;QD=17.95;ReadPosRankSum=-3.753;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,86:91:88:1666,88,0 chrXI 383010 . G A 9353.01 filter AC=2;AF=1.00;AN=2;DP=401;Dels=0.00;FS=0.000;HaplotypeScore=34.1941;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.32;SB=-4.378e+03 GT:AD:DP:GQ:PL 1/1:0,400:401:99:9353,1012,0 chrXI 383133 . A G 9588.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=425;Dels=0.00;FS=3.083;HaplotypeScore=23.6235;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=0.790;QD=22.56;ReadPosRankSum=1.724;SB=-5.245e+03 GT:AD:DP:GQ:PL 1/1:1,422:425:99:9588,1077,0 chrXI 383538 . A G 6061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=276;Dels=0.00;FS=5.960;HaplotypeScore=18.3175;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.675;QD=21.96;ReadPosRankSum=2.960;SB=-3.274e+03 GT:AD:DP:GQ:PL 1/1:3,273:276:99:6061,672,0 chrXI 383706 . T C 4504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=197;Dels=0.00;FS=4.208;HaplotypeScore=7.5501;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.288;QD=22.86;ReadPosRankSum=1.714;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4504,492,0 chrXI 383799 . G A 5226.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.65;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5226,538,0 chrXI 384068 . A G 7007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=350;Dels=0.00;FS=2.870;HaplotypeScore=17.2498;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.683;QD=20.02;ReadPosRankSum=2.337;SB=-3.613e+03 GT:AD:DP:GQ:PL 1/1:2,348:350:99:7007,786,0 chrXI 384933 . G C 1106 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=24.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1139,126,0 chrXI 385128 . G T 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;DP=81;Dels=0.00;FS=98.118;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=47.68;MQ0=0;MQRankSum=-3.767;QD=0.63;ReadPosRankSum=-1.215;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,39:81:81:81,0,268 chrXI 385129 . A T 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;DP=81;Dels=0.00;FS=87.370;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=47.68;MQ0=0;MQRankSum=-4.654;QD=0.59;ReadPosRankSum=-0.799;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,34:81:78:78,0,312 chrXI 385427 . T A 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=134;Dels=0.00;FS=3.245;HaplotypeScore=123.2391;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=1.003;QD=22.12;ReadPosRankSum=1.680;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2997,315,0 chrXI 385606 . T A 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.018;DP=140;Dels=0.00;FS=12.332;HaplotypeScore=10.5072;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.879;QD=17.27;ReadPosRankSum=3.620;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:6,134:140:99:2451,276,0 chrXI 386072 . C G 4204.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4204,468,0 chrXI 386153 . A C 2869 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.8397;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2902,318,0 chrXI 386309 . T C 4793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=205;Dels=0.00;FS=4.346;HaplotypeScore=18.2929;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.477;QD=23.38;ReadPosRankSum=1.613;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4793,525,0 chrXI 386751 . G A 5703.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.12;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5703,607,0 chrXI 387042 . A G 5284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.432;DP=250;Dels=0.00;FS=23.777;HaplotypeScore=8.3172;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.318;QD=21.14;ReadPosRankSum=4.474;SB=-2.989e+03 GT:AD:DP:GQ:PL 1/1:7,243:250:99:5284,585,0 chrXI 387050 . C T 5425.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=6.0608;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.89;SB=-3.102e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5425,574,0 chrXI 387224 . A T 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.007;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.7379;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=0.287;QD=15.97;ReadPosRankSum=3.998;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:6,153:159:99:2573,276,0 chrXI 387306 . A G 1683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.678;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.0579;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=1.323;QD=17.17;ReadPosRankSum=2.928;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:3,94:98:99:1716,186,0 chrXI 387623 . C G 2715 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.37;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2748,300,0 chrXI 388314 . A C 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.652;QD=24.49;ReadPosRankSum=1.710;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3772,408,0 chrXI 388404 . C T 3720.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.64;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3720,402,0 chrXI 388737 . A G 4897.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.11;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4897,523,0 chrXI 389917 . A G 3821.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.8849;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.49;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3821,417,0 chrXI 389926 . A G 3836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=3.248;HaplotypeScore=4.3328;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.479;QD=19.88;ReadPosRankSum=1.695;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:1,187:193:99:3836,414,0 chrXI 389964 . C T 3333.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.8804;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=18.02;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3333,369,0 chrXI 390146 . A G 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=1.044;QD=24.53;ReadPosRankSum=1.683;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3459,375,0 chrXI 390904 . G A 2848 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2881,297,0 chrXI 391885 . T C 5058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.943;DP=229;Dels=0.00;FS=14.699;HaplotypeScore=19.1263;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.059;QD=22.09;ReadPosRankSum=4.174;SB=-2.828e+03 GT:AD:DP:GQ:PL 1/1:6,223:229:99:5058,552,0 chrXI 392532 . G T 3555.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3555,372,0 chrXI 393650 . T C 4307.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.3877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.49;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4307,462,0 chrXI 393718 . A G 3875.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0155;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.92;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,158:162:99:3875,420,0 chrXI 394215 . T C 5640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=250;Dels=0.00;FS=3.007;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.508;QD=22.56;ReadPosRankSum=2.430;SB=-3.003e+03 GT:AD:DP:GQ:PL 1/1:2,247:250:99:5640,627,0 chrXI 394249 . T C 5881.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=10.2958;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.97;SB=-3.165e+03 GT:AD:DP:GQ:PL 1/1:0,253:256:99:5881,637,0 chrXI 394515 . T C 3331.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.13;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3331,363,0 chrXI 394540 . C T 3801.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.68;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3801,394,0 chrXI 394878 . T C 4434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=1.099;QD=25.05;ReadPosRankSum=1.692;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:4434,477,0 chrXI 395017 . T C 2913 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=17.34;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2946,333,0 chrXI 395025 . A C 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=4.596;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;MQRankSum=-0.143;QD=16.98;ReadPosRankSum=0.469;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:2919,318,0 chrXI 395041 . G A 2804 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=17.10;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2837,294,0 chrXI 395062 . A G 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=162;Dels=0.00;FS=2.725;HaplotypeScore=4.7097;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;MQRankSum=-1.236;QD=14.06;ReadPosRankSum=2.404;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:2311,255,0 chrXI 395065 . A G 2335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=160;Dels=0.00;FS=2.765;HaplotypeScore=7.1812;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;MQRankSum=-0.677;QD=14.59;ReadPosRankSum=2.418;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:2368,255,0 chrXI 395161 . A G 3996.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.6316;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=24.52;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3996,429,0 chrXI 395287 . T C 2731 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.7964;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=19.37;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2764,303,0 chrXI 395371 . A G 3227.04 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=20.55;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3260,366,0 chrXI 395389 . C T 3482.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=21.10;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3482,369,0 chrXI 395416 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.10;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3547,381,0 chrXI 395440 . C T 4670.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=12.2633;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.85;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4670,498,0 chrXI 395566 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.1616;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.779;QD=20.19;ReadPosRankSum=1.689;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3270,360,0 chrXI 395584 . G T 3007 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=18.34;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3040,324,0 chrXI 396283 . G A 3112 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.2604;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.07;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3145,345,0 chrXI 396469 . G T 6281.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=17.9386;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.79;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:6281,673,0 chrXI 396726 . C G 7550.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.23;SB=-3.887e+03 GT:AD:DP:GQ:PL 1/1:0,320:325:99:7550,811,0 chrXI 396781 . G A 7068.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=15.9402;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.02;SB=-3.098e+03 GT:AD:DP:GQ:PL 1/1:0,319:321:99:7068,766,0 chrXI 397947 . C T 4141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=171;Dels=0.00;FS=3.222;HaplotypeScore=15.4177;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.722;QD=24.22;ReadPosRankSum=1.134;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4141,439,0 chrXI 398959 . A G 2601 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.25;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2634,279,0 chrXI 400341 . C T 4489.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=17.5357;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.56;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4489,478,0 chrXI 400616 . C T 4956.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.05;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4956,534,0 chrXI 401890 . C G 5988.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=10.5300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-3.049e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:5988,640,0 chrXI 403748 . C G 5829.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=14.5999;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.22;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5829,633,0 chrXI 403926 . T C 4774.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.0005;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.60;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4774,513,0 chrXI 404440 . C T 4234.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.2815;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.76;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4234,448,0 chrXI 404872 . T C 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.612;QD=24.55;ReadPosRankSum=1.684;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3560,384,0 chrXI 404905 . C G 3482.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.36;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3482,393,0 chrXI 405343 . C T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.68;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3317,360,0 chrXI 405361 . A C 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=159;Dels=0.00;FS=2.607;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=0.997;QD=21.54;ReadPosRankSum=2.419;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3425,372,0 chrXI 405871 . C G 3985.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3985,432,0 chrXI 406060 . G A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3682,388,0 chrXI 406357 . T C 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=117;Dels=0.00;FS=2.739;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.524;QD=22.49;ReadPosRankSum=2.407;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:2,113:117:99:2664,288,0 chrXI 406489 . A G 2267 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2300,258,0 chrXI 407572 . T C 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.030;QD=23.45;ReadPosRankSum=1.672;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4057,435,0 chrXI 407876 . A G 3719.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.0639;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.14;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3719,414,0 chrXI 408039 . A G 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=143;Dels=0.00;FS=2.589;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.021;QD=22.01;ReadPosRankSum=2.951;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:3181,348,0 chrXI 408111 . T G 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=141;Dels=0.00;FS=2.914;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.923;QD=24.33;ReadPosRankSum=2.415;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3430,369,0 chrXI 408233 . T C 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-1.703;QD=20.08;ReadPosRankSum=1.587;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2463,267,0 chrXI 408244 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.39;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2704,291,0 chrXI 408275 . T C 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6388;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-1.132;QD=18.91;ReadPosRankSum=1.709;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2869,315,0 chrXI 408466 . C T 4651.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=25.70;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4651,478,0 chrXI 408521 . T G 5065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.4800;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.970;QD=24.23;ReadPosRankSum=1.699;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:5065,549,0 chrXI 408636 . T C 4264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=185;Dels=0.00;FS=3.307;HaplotypeScore=15.1984;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.266;QD=23.05;ReadPosRankSum=1.713;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:1,181:185:99:4264,477,0 chrXI 408759 . G C 4579.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.56;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4579,507,0 chrXI 408966 . C T 4702.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.08;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4702,516,0 chrXI 409121 . G A 5097.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.1938;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.87;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5097,529,0 chrXI 409333 . A G 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=101;Dels=0.00;FS=3.053;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.234;QD=21.62;ReadPosRankSum=2.401;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:2,98:101:99:2217,243,0 chrXI 409377 . C T 2124 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.09;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2157,231,0 chrXI 409936 . T C 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.028;QD=22.59;ReadPosRankSum=2.375;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3015,321,0 chrXI 409950 . C T 2791 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.67;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2824,309,0 chrXI 410208 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=21.89;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3808,405,0 chrXI 410220 . T C 3389.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=20.79;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3389,378,0 chrXI 410222 . G C 3421.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=21.25;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3421,366,0 chrXI 410250 . G A 3532.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=21.15;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3532,381,0 chrXI 410346 . A G 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=154;Dels=0.00;FS=7.553;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.205;QD=23.86;ReadPosRankSum=2.417;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:2,150:154:99:3674,396,0 chrXI 410472 . T C 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=176;Dels=0.00;FS=3.034;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.091;QD=22.94;ReadPosRankSum=2.407;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:4038,438,0 chrXI 410677 . A G 3954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.724;QD=23.68;ReadPosRankSum=-0.430;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3954,435,0 chrXI 410877 . C T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.30;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3839,408,0 chrXI 410991 . A G 4493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=190;Dels=0.00;FS=3.150;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.985;QD=23.65;ReadPosRankSum=1.696;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4493,483,0 chrXI 410995 . T C 4240.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.67;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4240,468,0 chrXI 411118 . G A 4998.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.87;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4998,520,0 chrXI 411807 . G T 3932.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.54;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3932,409,0 chrXI 412990 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.2371;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.74;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3304,357,0 chrXI 413234 . A T 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.433;QD=25.12;ReadPosRankSum=1.682;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3492,363,0 chrXI 413359 . C T 3725.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=24.51;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3725,393,0 chrXI 413439 . G T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.82;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3301,348,0 chrXI 413807 . T C 3085 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0960;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3118,336,0 chrXI 416245 . T A 2477 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.94;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2510,261,0 chrXI 416349 . A T 2863 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.66;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2896,300,0 chrXI 416398 . A G 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=3.418;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.439;QD=23.58;ReadPosRankSum=1.706;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3193,360,0 chrXI 416779 . G T 3783.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.79;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3783,402,0 chrXI 416820 . G A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.18;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3662,382,0 chrXI 417393 . A T 3085 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3118,333,0 chrXI 420643 . T G 2516 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2549,282,0 chrXI 421142 . C T 3304.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6800;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.94;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3304,354,0 chrXI 421352 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.01;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:3009,309,0 chrXI 423496 . A T 3348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.471;QD=22.93;ReadPosRankSum=1.637;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3348,360,0 chrXI 424451 . C T 2857 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2890,306,0 chrXI 425592 . C A 5084.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=5.1396;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=19.18;SB=-2.886e+03 GT:AD:DP:GQ:PL 1/1:0,258:265:99:5084,546,0 chrXI 425593 . T C 4841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.996;DP=270;Dels=0.00;FS=10.691;HaplotypeScore=9.8170;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.105;QD=17.93;ReadPosRankSum=4.077;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:6,260:270:99:4841,546,0 chrXI 427367 . A G 3595.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.47;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3595,399,0 chrXI 427643 . A T 4197.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4197,453,0 chrXI 427982 . C T 4667.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.96;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4667,484,0 chrXI 428081 . C G 4466.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4466,483,0 chrXI 429131 . C T 2680 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.71;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2713,294,0 chrXI 429453 . A G 3947.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3947,447,0 chrXI 429856 . C T 3596.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3596,373,0 chrXI 429958 . C T 3541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.311;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.100;QD=23.30;ReadPosRankSum=-0.398;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:1,148:152:99:3541,356,0 chrXI 430438 . C T 4495.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.0037;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4495,469,0 chrXI 430471 . G T 5819.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=9.1601;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.08;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5819,610,0 chrXI 430668 . T C 5300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=233;Dels=0.00;FS=3.655;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.119;QD=22.75;ReadPosRankSum=1.672;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:1,231:233:99:5300,576,0 chrXI 430859 . T C 3877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.349;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.823;QD=23.93;ReadPosRankSum=1.667;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3877,414,0 chrXI 430903 . G T 3692.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.7446;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.24;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3692,402,0 chrXI 432569 . C G 2491 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=32.16;MQ0=0;QD=25.16;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2524,270,0 chrXI 432748 . A G 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.671;DP=150;Dels=0.00;FS=5.248;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;MQRankSum=-0.537;QD=20.87;ReadPosRankSum=2.953;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:3164,348,0 chrXI 433806 . T C 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=142;Dels=0.00;FS=9.695;HaplotypeScore=13.5589;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.447;QD=21.82;ReadPosRankSum=2.908;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3131,342,0 chrXI 434001 . C T 4537.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.21;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4537,484,0 chrXI 434756 . A G 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.216;QD=20.00;ReadPosRankSum=2.390;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3300,363,0 chrXI 435620 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3440,360,0 chrXI 436368 . C T 4909.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=21.2191;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.49;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4909,514,0 chrXI 436741 . T A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.0789;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.83;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3268,360,0 chrXI 436933 . A T 3159 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=21.49;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3192,342,0 chrXI 436938 . T G 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=144;Dels=0.00;FS=2.580;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=-1.119;QD=21.31;ReadPosRankSum=2.895;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3101,345,0 chrXI 437047 . T C 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.275;DP=182;Dels=0.00;FS=2.410;HaplotypeScore=10.6263;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;MQRankSum=0.888;QD=23.50;ReadPosRankSum=2.926;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:4,176:182:99:4277,480,0 chrXI 437150 . A T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=20.44;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3393,366,0 chrXI 437157 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=21.24;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3675,382,0 chrXI 437524 . T G 4247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=181;Dels=0.00;FS=3.386;HaplotypeScore=13.6502;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.330;QD=23.46;ReadPosRankSum=1.713;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4247,471,0 chrXI 437633 . G T 3541.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.08;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3541,384,0 chrXI 437645 . C T 3423.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.75;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3423,372,0 chrXI 438455 . C G 3363.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.72;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3363,366,0 chrXI 438499 . C T 3027 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2470;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.47;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3060,327,0 chrXI 438630 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.66;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1507,159,0 chrXI 438773 . C T 1615 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.47;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1648,177,0 chrXI 439020 . A G 3414.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.87;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3414,366,0 chrXI 439200 . G A 4257.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.97;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4257,471,0 chrXI 439212 . C T 4226.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.1490;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.34;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4226,453,0 chrXI 439244 . G A 4153.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=21.97;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,185:189:99:4153,433,0 chrXI 439266 . G A 3124 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=17.85;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3157,336,0 chrXI 439278 . A C 2854 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=16.89;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:2887,318,0 chrXI 439411 . A T 4262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.4017;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.810;QD=23.04;ReadPosRankSum=1.713;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4262,459,0 chrXI 439560 . C T 3047 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.05;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3080,327,0 chrXI 439568 . C T 2951 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.41;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2984,321,0 chrXI 439634 . T C 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=165;Dels=0.00;FS=2.574;HaplotypeScore=8.8315;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.049;QD=19.33;ReadPosRankSum=2.871;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3223,351,0 chrXI 439704 . C T 2865 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=18.37;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2898,306,0 chrXI 439872 . G T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=25.29;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3920,406,0 chrXI 439943 . C T 1777 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;QD=20.43;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1810,192,0 chrXI 439950 . T C 1589 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;QD=20.64;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1622,174,0 chrXI 439996 . A C 1212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;MQRankSum=-1.030;QD=16.38;ReadPosRankSum=1.685;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1245,141,0 chrXI 440055 . G A 942 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=18.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:99:975,102,0 chrXI 440066 . T C 904 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=17.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:51:99:937,102,0 chrXI 440077 . T G 693 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=15.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:81:726,81,0 chrXI 440078 . G T 719 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=15.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:81:752,81,0 chrXI 440165 . G A 184.03 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=16.73;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:24:217,24,0 chrXI 440171 . G A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=2.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:6:50,6,0 chrXI 440273 . G T 1285 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1318,138,0 chrXI 440282 . A C 1375 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1408,150,0 chrXI 440346 . G C 1154 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=21.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1187,129,0 chrXI 440371 . T A 1242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=-1.237;QD=22.18;ReadPosRankSum=1.670;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1275,138,0 chrXI 440375 . A C 1142 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=18.72;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1175,132,0 chrXI 440385 . G C 1188 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=18.56;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1221,138,0 chrXI 440556 . G A 2973 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.3335;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=23.23;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3006,315,0 chrXI 440589 . C T 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.5488;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=1.189;QD=23.34;ReadPosRankSum=0.724;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3161,336,0 chrXI 440926 . G T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.53;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3727,402,0 chrXI 441067 . T C 4540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.5968;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.703;QD=22.15;ReadPosRankSum=1.715;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:1,201:205:99:4540,498,0 chrXI 441121 . A G 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-0.720;QD=21.62;ReadPosRankSum=1.635;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3849,417,0 chrXI 441849 . C G 3821.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.74;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,163:168:99:3821,420,0 chrXI 442264 . G A 4159.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4159,450,0 chrXI 442302 . T G 3555.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.7087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3555,390,0 chrXI 442829 . C T 2782 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.73;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2815,300,0 chrXI 443215 . C G 2660 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2693,294,0 chrXI 443275 . C T 2555 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.07;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2588,267,0 chrXI 443630 . T C 2985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.695;QD=21.63;ReadPosRankSum=1.682;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3018,342,0 chrXI 443774 . C T 3329.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.61;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3329,354,0 chrXI 444257 . G A 2789 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=14.8961;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.81;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2822,300,0 chrXI 445052 . A G 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=8.444;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.294;QD=24.89;ReadPosRankSum=2.340;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3335,363,0 chrXI 445144 . C T 3146 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.7420;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.02;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:3179,330,0 chrXI 445342 . T C 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.676;DP=153;Dels=0.00;FS=6.108;HaplotypeScore=15.6662;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.729;QD=21.59;ReadPosRankSum=2.954;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:3303,369,0 chrXI 445472 . A G 3814.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.8006;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.17;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3814,411,0 chrXI 445854 . T C 2575 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2608,285,0 chrXI 446016 . C G 3170 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.17;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3203,360,0 chrXI 446218 . G A 3469.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.6120;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.51;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3469,366,0 chrXI 446566 . G A 2581 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2614,282,0 chrXI 446892 . A G 2054 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.75;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:2087,222,0 chrXI 447051 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=141;Dels=0.00;FS=3.595;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.090;QD=24.45;ReadPosRankSum=0.988;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,134:141:99:3448,356,0 chrXI 447886 . T C 3019 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=23.05;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3052,333,0 chrXI 447905 . T C 2950 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.85;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2983,324,0 chrXI 447910 . C G 2986 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.64;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3019,333,0 chrXI 448103 . G A 2101 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.44;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2134,231,0 chrXI 448167 . T C 2508 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=23.44;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2541,273,0 chrXI 448340 . C A 3019 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=16.7952;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=20.82;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3052,318,0 chrXI 448425 . C T 3767.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.7554;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=25.11;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3767,394,0 chrXI 448481 . A G 4250.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=173;Dels=0.00;FS=3.190;HaplotypeScore=9.8821;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=0.330;QD=24.57;ReadPosRankSum=1.692;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4250,465,0 chrXI 448511 . G C 4573.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=24.07;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4573,510,0 chrXI 448952 . G A 3720.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.2445;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=22.96;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3720,396,0 chrXI 448966 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=21.46;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3498,369,0 chrXI 449087 . T A 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=151;Dels=0.00;FS=3.035;HaplotypeScore=6.8152;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=-0.252;QD=21.03;ReadPosRankSum=2.401;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3208,336,0 chrXI 449097 . T C 2890 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=19.79;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2923,327,0 chrXI 449124 . C T 2575 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=17.88;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2608,279,0 chrXI 449136 . A G 2623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-0.693;QD=18.60;ReadPosRankSum=1.707;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2656,288,0 chrXI 449167 . C T 3169 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.71;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3202,333,0 chrXI 449192 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.87;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3590,387,0 chrXI 449253 . A G 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=185;Dels=0.00;FS=3.018;HaplotypeScore=18.7642;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.289;QD=22.82;ReadPosRankSum=2.409;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:4221,456,0 chrXI 449495 . C T 3571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.8017;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.377;QD=22.89;ReadPosRankSum=-0.844;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3571,381,0 chrXI 449753 . C T 4001.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.3946;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=25.32;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4001,421,0 chrXI 450210 . C A 3217.04 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.89;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3250,334,0 chrXI 450846 . C A 3697.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.67;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3697,390,0 chrXI 450921 . A G 4031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=3.738;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.039;QD=22.90;ReadPosRankSum=1.673;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4031,444,0 chrXI 450942 . A T 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=164;Dels=0.00;FS=3.993;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.457;QD=22.07;ReadPosRankSum=1.711;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3620,387,0 chrXI 450979 . T C 4318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=185;Dels=0.00;FS=2.824;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.431;QD=23.34;ReadPosRankSum=2.410;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4318,462,0 chrXI 451012 . G T 4956.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.53;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4956,517,0 chrXI 451041 . T C 6093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=19.0866;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=1.439;QD=23.43;ReadPosRankSum=1.719;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:1,259:260:99:6093,652,0 chrXI 451283 . G A 6206.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=11.4107;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.97;SB=-2.984e+03 GT:AD:DP:GQ:PL 1/1:0,294:296:99:6206,655,0 chrXI 451308 . C G 4934.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=7.3629;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=18.98;SB=-3.049e+03 GT:AD:DP:GQ:PL 1/1:0,255:260:99:4934,549,0 chrXI 451419 . A G 5255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=236;Dels=0.00;FS=7.712;HaplotypeScore=27.8308;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.530;QD=22.27;ReadPosRankSum=2.397;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:2,233:236:99:5255,576,0 chrXI 451772 . T C 4370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=3.397;HaplotypeScore=10.4517;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.350;QD=23.12;ReadPosRankSum=1.695;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4370,492,0 chrXI 451819 . C A 4609.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.3364;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.70;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4609,481,0 chrXI 452719 . C G 3727.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.20;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3727,414,0 chrXI 453079 . C T 2599 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.52;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2632,276,0 chrXI 453381 . T C 3001 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3034,333,0 chrXI 453487 . C T 2702 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.34;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2735,294,0 chrXI 453612 . T C 2576 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.63;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2609,291,0 chrXI 453876 . C T 3142 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.45;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3175,336,0 chrXI 454007 . A G 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.2936;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.023;QD=22.49;ReadPosRankSum=1.617;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3373,369,0 chrXI 454373 . C T 3414.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=25.67;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3414,355,0 chrXI 454594 . T C 5159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.715;QD=24.92;ReadPosRankSum=1.715;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:5159,556,0 chrXI 455417 . G A 3039 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6916;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.40;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3072,318,0 chrXI 455430 . C T 2814 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.54;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2847,300,0 chrXI 455741 . T C 3857.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.29;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3857,435,0 chrXI 455753 . T G 3936.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.29;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3936,429,0 chrXI 455903 . A C 4177.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.47;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4177,459,0 chrXI 456239 . A G 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.7554;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.613;QD=21.31;ReadPosRankSum=1.689;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3473,384,0 chrXI 456734 . A G 3525.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.7021;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.92;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3525,387,0 chrXI 456743 . T C 3495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=191;Dels=0.00;FS=4.237;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=1.152;QD=18.30;ReadPosRankSum=1.623;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3495,381,0 chrXI 456866 . T C 3847.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3847,420,0 chrXI 457115 . T C 3613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.101;DP=169;Dels=0.00;FS=7.568;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.894;QD=21.38;ReadPosRankSum=2.391;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3613,399,0 chrXI 457349 . T C 2882 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2915,321,0 chrXI 457413 . C A 2880 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.33;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2913,309,0 chrXI 457446 . C T 2553 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.27;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2586,279,0 chrXI 457465 . G C 2532 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.10;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2565,291,0 chrXI 457579 . C A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.7468;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=25.92;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3292,354,0 chrXI 457680 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=24.02;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2771,288,0 chrXI 457686 . G A 2692 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=23.41;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2725,288,0 chrXI 457702 . A G 2406 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=21.48;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2439,273,0 chrXI 457721 . T C 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=125;Dels=0.00;FS=7.768;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.506;QD=21.47;ReadPosRankSum=2.410;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2717,300,0 chrXI 457806 . G T 2719 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.60;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2752,285,0 chrXI 457807 . G C 2521 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.39;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2554,285,0 chrXI 457945 . T C 3048 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;QD=23.27;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3081,336,0 chrXI 458003 . G A 2965 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=24.50;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2998,318,0 chrXI 458040 . T C 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=4.934;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;MQRankSum=0.493;QD=21.76;ReadPosRankSum=1.637;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2405,258,0 chrXI 458781 . C T 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.681;DP=124;Dels=0.00;FS=4.736;HaplotypeScore=7.4314;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.249;QD=24.32;ReadPosRankSum=-1.505;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,122:124:99:3049,303,0 chrXI 458931 . T C 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.607;QD=24.76;ReadPosRankSum=1.657;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:3466,369,0 chrXI 458968 . A G 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=161;Dels=0.00;FS=3.791;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.162;QD=23.86;ReadPosRankSum=1.666;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,157:161:99:3841,423,0 chrXI 459142 . T C 3735.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.3217;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.49;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3735,420,0 chrXI 459200 . C T 3692.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3692,393,0 chrXI 459289 . G T 2458 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.7555;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.66;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2491,261,0 chrXI 459306 . G A 2259 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.31;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2292,246,0 chrXI 459567 . T C 2607 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.92;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2640,285,0 chrXI 459630 . C T 2814 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.26;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2847,297,0 chrXI 459646 . A C 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=4.540;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-1.164;QD=24.12;ReadPosRankSum=1.705;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3121,333,0 chrXI 460040 . C A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.54;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3404,363,0 chrXI 460324 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=20.54;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3800,400,0 chrXI 460331 . C G 3359.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.01;FS=0.000;HaplotypeScore=6.2755;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=18.26;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3359,378,0 chrXI 460360 . T C 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.418;DP=205;Dels=0.00;FS=5.222;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;MQRankSum=-1.264;QD=14.81;ReadPosRankSum=3.392;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:4,201:205:99:3069,333,0 chrXI 460364 . C T 3051 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=14.32;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:3084,324,0 chrXI 460601 . G A 4610.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=14.8075;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=22.38;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4610,498,0 chrXI 460642 . A G 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.309;DP=129;Dels=0.00;FS=8.969;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=0.741;QD=22.26;ReadPosRankSum=3.295;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:4,125:129:99:2904,315,0 chrXI 460664 . A G 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.419;DP=130;Dels=0.00;FS=12.118;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=1.082;QD=19.03;ReadPosRankSum=3.776;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:5,123:130:99:2507,279,0 chrXI 460991 . T C 3286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.758;QD=24.16;ReadPosRankSum=2.413;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3286,351,0 chrXI 461216 . C T 3700.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3700,390,0 chrXI 461279 . T A 4118.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=167;Dels=0.00;FS=8.373;HaplotypeScore=10.5552;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.964;QD=24.66;ReadPosRankSum=2.391;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4118,430,0 chrXI 461587 . A G 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.929;QD=24.75;ReadPosRankSum=1.657;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3415,372,0 chrXI 461628 . G A 2944 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.33;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2977,312,0 chrXI 461890 . G A 3021 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8170;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.42;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3054,318,0 chrXI 462364 . G A 2807 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.0469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2840,303,0 chrXI 462769 . A T 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=0.570;QD=21.94;ReadPosRankSum=1.690;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3620,387,0 chrXI 462779 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=21.19;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3391,354,0 chrXI 462789 . A G 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.603;DP=152;Dels=0.00;FS=12.320;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=-0.796;QD=18.25;ReadPosRankSum=3.791;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:5,146:152:99:2807,303,0 chrXI 462819 . G A 2575 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=18.39;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2608,279,0 chrXI 462985 . T A 3990.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=23.75;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3990,432,0 chrXI 463364 . C T 5393.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.1329;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.85;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5393,574,0 chrXI 463411 . T C 4494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.080;QD=23.05;ReadPosRankSum=1.679;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4494,489,0 chrXI 463472 . T A 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.409;DP=176;Dels=0.00;FS=5.252;HaplotypeScore=11.8757;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.411;QD=21.91;ReadPosRankSum=3.358;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:4,171:176:99:3857,417,0 chrXI 463630 . T C 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=216;Dels=0.00;FS=12.984;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-1.014;QD=16.82;ReadPosRankSum=2.949;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:3,212:216:99:3633,405,0 chrXI 463660 . C T 4729.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=13.5970;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.74;SB=-3.006e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:4729,502,0 chrXI 463936 . T C 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.725;DP=157;Dels=0.00;FS=6.061;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.904;QD=22.47;ReadPosRankSum=2.930;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3527,387,0 chrXI 464063 . A C 5569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=259;Dels=0.00;FS=2.533;HaplotypeScore=16.2828;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-1.914;QD=21.50;ReadPosRankSum=1.608;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:3,253:259:99:5569,598,0 chrXI 464192 . A G 5981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.594;QD=21.67;ReadPosRankSum=1.682;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:1,275:276:99:5981,643,0 chrXI 464447 . C T 690.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.934;DP=436;Dels=0.00;FS=24.698;HaplotypeScore=12.1005;MLEAC=1;MLEAF=0.500;MQ=46.99;MQ0=0;MQRankSum=-10.680;QD=1.58;ReadPosRankSum=1.221;SB=-1.935e+03 GT:AD:DP:GQ:PL 0/1:227,206:436:99:720,0,3509 chrXI 464453 . T C 4842.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.433;DP=439;Dels=0.00;FS=2.671;HaplotypeScore=25.1834;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;MQRankSum=-1.034;QD=11.03;ReadPosRankSum=2.342;SB=-4.124e+03 GT:AD:DP:GQ:PL 1/1:2,431:439:99:4842,520,0 chrXI 464477 . C T 105.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.955;DP=441;Dels=0.01;FS=13.672;HaplotypeScore=57.5122;MLEAC=1;MLEAF=0.500;MQ=45.54;MQ0=0;MQRankSum=-3.177;QD=0.24;ReadPosRankSum=-10.838;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:352,84:437:99:135,0,2728 chrXI 464717 . G A 6364.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.93;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,302:304:99:6364,688,0 chrXI 464840 . C T 5054.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=14.1895;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.78;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,228:232:99:5054,538,0 chrXI 464863 . A C 4045.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.769;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=0.395;QD=20.85;ReadPosRankSum=2.695;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:5,189:194:99:4045,441,0 chrXI 465048 . C T 129.13 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.03;FS=0.000;HaplotypeScore=15.7910;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=1.35;SB=-7.111e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:18:162,18,0 chrXI 465951 . A G 3989.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.5449;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.03;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3989,432,0 chrXI 466027 . A G 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=142;Dels=0.00;FS=2.590;HaplotypeScore=9.0412;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.367;QD=22.45;ReadPosRankSum=2.950;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:3,137:142:99:3221,348,0 chrXI 466412 . A G 4290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=187;Dels=0.00;FS=5.817;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.897;QD=22.94;ReadPosRankSum=2.810;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:3,182:187:99:4290,474,0 chrXI 466447 . G T 4485.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.48;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4485,477,0 chrXI 466582 . C A 4477.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.7048;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4477,480,0 chrXI 466913 . C T 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.155;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.2199;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-1.224;QD=22.40;ReadPosRankSum=-1.686;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3382,351,0 chrXI 466945 . T G 3621.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.98;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3621,387,0 chrXI 467093 . G C 2789 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.1947;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.24;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2822,303,0 chrXI 467162 . A G 3035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.233;QD=21.52;ReadPosRankSum=1.708;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3068,339,0 chrXI 467237 . G A 2339 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.70;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2372,255,0 chrXI 467243 . T C 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=104;Dels=0.00;FS=8.735;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=1.087;QD=21.43;ReadPosRankSum=2.402;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:2,101:104:99:2262,243,0 chrXI 467309 . A G 3001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=9.030;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.550;QD=22.73;ReadPosRankSum=2.412;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3034,333,0 chrXI 467328 . T C 3567.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.31;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3567,396,0 chrXI 467380 . T C 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.9922;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=1.552;QD=21.85;ReadPosRankSum=1.706;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2983,330,0 chrXI 467432 . C T 4098.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.9724;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=24.99;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4098,435,0 chrXI 467504 . G C 5545.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.91;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5545,612,0 chrXI 467528 . G A 5437.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=4.3360;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.65;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5437,571,0 chrXI 467564 . T G 4485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.7386;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-1.005;QD=21.99;ReadPosRankSum=1.715;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:1,199:204:99:4485,498,0 chrXI 467597 . G A 3992.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=21.01;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:3992,432,0 chrXI 467627 . C T 3893.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=19.86;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3893,414,0 chrXI 467651 . T C 4382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=221;Dels=0.00;FS=4.413;HaplotypeScore=4.4537;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=0.901;QD=19.83;ReadPosRankSum=1.716;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:4382,474,0 chrXI 467666 . A G 4251.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.797;DP=225;Dels=0.00;FS=7.863;HaplotypeScore=6.3168;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=0.789;QD=18.89;ReadPosRankSum=3.769;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:5,220:225:99:4251,474,0 chrXI 467744 . A G 5197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=228;Dels=0.00;FS=2.996;HaplotypeScore=12.7333;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.005;QD=22.79;ReadPosRankSum=2.428;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:2,226:228:99:5197,567,0 chrXI 467777 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=204;Dels=0.00;FS=10.042;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.716;QD=19.90;ReadPosRankSum=2.955;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:3,199:204:99:4060,456,0 chrXI 467786 . T A 3955.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.60;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3955,420,0 chrXI 467853 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.48;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3399,354,0 chrXI 468017 . A C 4001.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.70;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4001,429,0 chrXI 468315 . A T 2491 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.18;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2524,267,0 chrXI 468684 . C A 1851 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.9491;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.28;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1884,204,0 chrXI 468708 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.14;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2189,234,0 chrXI 468793 . C T 4187.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=28.10;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:4187,430,0 chrXI 468928 . G A 2679 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.90;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2712,285,0 chrXI 469130 . C T 3484.01 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=23.07;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3484,372,0 chrXI 469133 . G A 3417.01 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=23.57;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3417,352,0 chrXI 469134 . C T 3315.01 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=23.02;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3315,354,0 chrXI 469182 . T C 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=136;Dels=0.00;FS=6.015;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.282;QD=19.96;ReadPosRankSum=2.919;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2748,297,0 chrXI 469480 . A G 3362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=4.369;HaplotypeScore=7.5281;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.646;QD=25.09;ReadPosRankSum=1.706;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3362,360,0 chrXI 469538 . T C 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=110;Dels=0.00;FS=11.242;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.807;QD=21.54;ReadPosRankSum=2.789;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:3,107:110:99:2402,264,0 chrXI 469561 . G A 2562 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.29;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2595,276,0 chrXI 469692 . A G 4124.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=6.0793;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.12;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4124,441,0 chrXI 469719 . G C 3445.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.92;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,140:144:99:3445,378,0 chrXI 469831 . C T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.58;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3537,367,0 chrXI 470250 . T A 3062 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.1205;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.41;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3095,330,0 chrXI 470487 . C T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.97;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3356,357,0 chrXI 470511 . T C 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.487;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=1.057;QD=21.63;ReadPosRankSum=1.620;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3353,381,0 chrXI 470556 . T C 2899 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.65;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2932,318,0 chrXI 470607 . C T 2983 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.60;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3016,315,0 chrXI 470620 . A T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=21.25;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3263,339,0 chrXI 470676 . A G 3345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=173;Dels=0.00;FS=7.650;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=0.391;QD=19.34;ReadPosRankSum=2.407;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3345,363,0 chrXI 470697 . G A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.74;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3392,372,0 chrXI 470858 . G C 4284.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.08;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4284,474,0 chrXI 470988 . C T 3154 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.90;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3187,339,0 chrXI 471237 . T C 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.406;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.8493;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.929;QD=19.40;ReadPosRankSum=-1.481;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,137:141:99:2768,280,0 chrXI 471301 . C T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.3037;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.67;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3306,342,0 chrXI 471365 . T G 2980 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=11.6878;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.65;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3013,330,0 chrXI 471379 . C A 2930 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.25;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2963,306,0 chrXI 471521 . C A 2233 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.02;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2266,237,0 chrXI 471647 . C T 1962 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=20.02;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1995,210,0 chrXI 471654 . A T 1743 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.8997;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=18.35;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1776,192,0 chrXI 471663 . G A 1847 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.2781;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=19.04;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1880,195,0 chrXI 472114 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.708;QD=23.01;ReadPosRankSum=1.684;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3313,363,0 chrXI 472885 . T C 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.581;QD=22.52;ReadPosRankSum=1.694;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4122,465,0 chrXI 472945 . C T 4211.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.52;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4211,448,0 chrXI 473123 . T C 4487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=3.147;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-0.268;QD=23.01;ReadPosRankSum=1.714;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4487,477,0 chrXI 473133 . G A 4144.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.6584;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.36;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4144,433,0 chrXI 473448 . C T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.81;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3330,351,0 chrXI 473650 . G A 3777.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=10.3528;MLEAC=2;MLEAF=1.00;MQ=60.55;MQ0=0;QD=24.53;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3777,391,0 chrXI 473756 . C T 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=3.935;HaplotypeScore=6.2324;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=1.186;QD=22.70;ReadPosRankSum=1.542;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3314,351,0 chrXI 473777 . C T 2329 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.61;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2362,252,0 chrXI 473897 . C T 3649.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.09;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3649,390,0 chrXI 473954 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.1335;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.86;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3675,390,0 chrXI 474803 . A G 5714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=266;Dels=0.00;FS=2.840;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.947;QD=21.48;ReadPosRankSum=2.272;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:2,261:266:99:5714,630,0 chrXI 474821 . G A 5580.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.80;SB=-2.743e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5580,612,0 chrXI 474932 . A G 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.838;QD=21.04;ReadPosRankSum=1.713;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3914,414,0 chrXI 474938 . G A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=19.19;SB=-2.625e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:3800,414,0 chrXI 475331 . C T 3471.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.39;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3471,366,0 chrXI 475354 . T G 3185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=150;Dels=0.00;FS=12.433;HaplotypeScore=11.0218;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.196;QD=21.23;ReadPosRankSum=2.493;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:3,146:150:99:3218,354,0 chrXI 475412 . A G 2683 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.13;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2716,300,0 chrXI 475709 . G A 2899 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=25.43;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2932,300,0 chrXI 475733 . C T 3308.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.50;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3308,346,0 chrXI 475940 . G A 3301.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.46;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3301,354,0 chrXI 475990 . A G 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.247;QD=21.16;ReadPosRankSum=1.666;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3344,366,0 chrXI 476134 . A T 4530.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=26.65;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4530,469,0 chrXI 476390 . A G 4238.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-1.281;QD=22.07;ReadPosRankSum=1.714;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4238,477,0 chrXI 476611 . T A 4455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=194;Dels=0.00;FS=5.947;HaplotypeScore=15.9218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.707;QD=22.96;ReadPosRankSum=2.964;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:4455,472,0 chrXI 476936 . A G 5565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=242;Dels=0.00;FS=5.956;HaplotypeScore=10.3281;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.696;QD=23.00;ReadPosRankSum=2.954;SB=-2.981e+03 GT:AD:DP:GQ:PL 1/1:3,238:242:99:5565,603,0 chrXI 477081 . G A 6804.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=25.1236;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.06;SB=-3.863e+03 GT:AD:DP:GQ:PL 1/1:0,292:295:99:6804,706,0 chrXI 477203 . T C 5874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=13.9573;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.548;QD=22.33;ReadPosRankSum=1.693;SB=-3.217e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:5874,666,0 chrXI 477518 . C T 2539 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2572,270,0 chrXI 477617 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.2421;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.11;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3420,369,0 chrXI 477692 . C T 3992.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.90;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3992,429,0 chrXI 478016 . T C 4355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=206;Dels=0.00;FS=6.934;HaplotypeScore=13.3679;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=-0.137;QD=21.14;ReadPosRankSum=2.414;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4355,483,0 chrXI 478037 . A G 4841.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.3592;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.21;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4841,525,0 chrXI 478176 . G T 6133.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=16.0200;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=26.10;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:6133,652,0 chrXI 478313 . A G 4805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-1.222;QD=21.84;ReadPosRankSum=2.360;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:4805,525,0 chrXI 478334 . A G 4850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.4834;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=0.363;QD=22.56;ReadPosRankSum=2.426;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:2,211:215:99:4850,522,0 chrXI 478550 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.4767;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.380;QD=23.78;ReadPosRankSum=1.708;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3496,393,0 chrXI 478766 . A T 4590.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4590,487,0 chrXI 478973 . C T 4232.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.88;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4232,450,0 chrXI 479040 . C T 4109.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=17.1283;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.17;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4109,427,0 chrXI 479187 . A G 3851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=193;Dels=0.01;FS=9.451;HaplotypeScore=44.8349;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=1.384;QD=19.95;ReadPosRankSum=2.411;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:2,187:192:99:3851,432,0 chrXI 479380 . A G 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=177;Dels=0.00;FS=2.583;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=1.313;QD=21.28;ReadPosRankSum=2.938;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:3766,417,0 chrXI 479482 . G A 3639.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.10;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3639,387,0 chrXI 479521 . A G 3293.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.04;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3293,363,0 chrXI 479695 . C T 4220.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=177;Dels=0.00;FS=3.763;HaplotypeScore=15.7422;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.689;QD=23.84;ReadPosRankSum=-1.614;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4220,450,0 chrXI 479989 . T C 3901.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.6801;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.16;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3901,420,0 chrXI 480096 . C A 2861 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2894,318,0 chrXI 480455 . A C 2879 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2912,330,0 chrXI 480529 . G A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.85;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3386,360,0 chrXI 480565 . C T 2936 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.08;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2969,309,0 chrXI 480613 . G A 2971 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=24.55;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3004,315,0 chrXI 480772 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.63;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3699,388,0 chrXI 480796 . A C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=172;Dels=0.00;FS=9.195;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=-0.536;QD=18.30;ReadPosRankSum=2.421;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3180,348,0 chrXI 480814 . A G 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=4.453;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=0.734;QD=18.18;ReadPosRankSum=1.694;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3346,363,0 chrXI 480844 . T C 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=0.564;QD=17.05;ReadPosRankSum=1.691;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:2932,321,0 chrXI 480871 . A T 2808 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.50;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2841,303,0 chrXI 481321 . A T 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=164;Dels=0.00;FS=3.345;HaplotypeScore=13.5670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.449;QD=22.66;ReadPosRankSum=1.689;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3717,385,0 chrXI 482141 . C T 3124 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.47;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3157,342,0 chrXI 482154 . A G 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=137;Dels=0.00;FS=6.647;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.494;QD=22.33;ReadPosRankSum=2.414;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3092,333,0 chrXI 482182 . T C 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=1.314;QD=19.52;ReadPosRankSum=1.662;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2941,327,0 chrXI 482277 . C G 2882 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2915,315,0 chrXI 482428 . T C 4108.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.34;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4108,441,0 chrXI 482863 . G C 3888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.377;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.7393;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=1.323;QD=19.84;ReadPosRankSum=-0.044;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:3888,423,0 chrXI 482864 . C T 3993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.106;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=1.555;QD=20.37;ReadPosRankSum=0.035;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:3993,429,0 chrXI 482900 . A G 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=208;Dels=0.00;FS=3.182;HaplotypeScore=15.0356;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.185;QD=18.50;ReadPosRankSum=1.715;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:3849,423,0 chrXI 483350 . A G 4067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=167;Dels=0.00;FS=2.913;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.762;QD=24.35;ReadPosRankSum=2.420;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:2,164:167:99:4067,435,0 chrXI 483589 . G T 2681 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.16;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2714,282,0 chrXI 483682 . C T 4219.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.42;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4219,447,0 chrXI 483717 . C T 3580.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.52;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3580,373,0 chrXI 483740 . G A 3394.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=25.14;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3394,351,0 chrXI 483783 . C T 3003 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.92;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3036,321,0 chrXI 483809 . T C 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=155;Dels=0.00;FS=5.473;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-0.513;QD=18.72;ReadPosRankSum=2.955;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:2935,318,0 chrXI 483815 . C G 2655 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.4539;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=17.58;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2688,297,0 chrXI 483858 . G A 3309.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=20.55;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3309,348,0 chrXI 484090 . C T 2847 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.73;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2880,303,0 chrXI 484096 . G T 2804 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.03;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2837,303,0 chrXI 484132 . C T 3332.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.36;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3332,360,0 chrXI 484168 . A T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.0534;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.21;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4038,432,0 chrXI 484393 . G A 4081.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.5309;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.32;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4081,441,0 chrXI 484474 . C T 4809.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4809,516,0 chrXI 484531 . T C 5971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=251;Dels=0.00;FS=5.661;HaplotypeScore=20.4734;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.294;QD=23.79;ReadPosRankSum=2.940;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:3,246:251:99:5971,654,0 chrXI 484732 . T C 5518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=234;Dels=0.00;FS=7.728;HaplotypeScore=19.3709;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.122;QD=23.58;ReadPosRankSum=2.397;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:2,232:234:99:5518,609,0 chrXI 484785 . A G 5450.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.19;SB=-2.964e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5450,589,0 chrXI 484810 . G A 4999.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.1329;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.36;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4999,529,0 chrXI 484887 . C T 3363.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.72;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3363,366,0 chrXI 484948 . A G 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.1377;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.097;QD=21.69;ReadPosRankSum=1.711;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3514,390,0 chrXI 485023 . A T 2888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.8322;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-1.356;QD=21.88;ReadPosRankSum=1.678;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2921,312,0 chrXI 485195 . A G 1741 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=16.58;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:1774,192,0 chrXI 485264 . T C 2845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=134;Dels=0.00;FS=2.964;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-1.349;QD=21.23;ReadPosRankSum=2.358;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2878,312,0 chrXI 485290 . A G 3282.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.28;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3282,351,0 chrXI 486335 . C T 4776.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.7413;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.41;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4776,510,0 chrXI 486368 . G A 4570.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.1015;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.44;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4570,484,0 chrXI 486393 . A G 4495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.250;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.9680;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.269;QD=23.29;ReadPosRankSum=-0.584;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:1,186:193:99:4495,489,0 chrXI 486704 . A G 6078.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=11.4402;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.595;QD=24.02;ReadPosRankSum=1.718;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:6078,669,0 chrXI 487013 . A T 3570.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.74;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3570,381,0 chrXI 487095 . G C 2908 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=13.8577;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2941,321,0 chrXI 487361 . T A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.67;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3355,348,0 chrXI 487615 . C T 2731 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.57;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2764,294,0 chrXI 487626 . C T 3284.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=24.15;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3284,340,0 chrXI 487734 . A G 4496.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.4322;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.04;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4496,507,0 chrXI 487769 . G A 4006.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.43;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4006,421,0 chrXI 488013 . G A 5544.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=17.0377;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.59;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5544,580,0 chrXI 488186 . A G 5256.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=19.7008;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.474;QD=24.33;ReadPosRankSum=1.716;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:5256,573,0 chrXI 488646 . C T 4302.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4302,465,0 chrXI 488882 . A G 5333.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=14.0035;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.81;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:0,221:224:99:5333,582,0 chrXI 489665 . C T 2247 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.03;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2280,249,0 chrXI 489732 . A T 2427 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.79;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2460,255,0 chrXI 489820 . C T 1981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=94;Dels=0.00;FS=4.416;HaplotypeScore=7.8384;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;MQRankSum=0.627;QD=21.07;ReadPosRankSum=-0.516;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2014,216,0 chrXI 489879 . A T 2012 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=16.36;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2045,225,0 chrXI 489881 . T C 1982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=125;Dels=0.00;FS=2.563;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=-0.895;QD=15.86;ReadPosRankSum=2.896;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2015,228,0 chrXI 489903 . T C 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=0.611;QD=16.13;ReadPosRankSum=1.707;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2275,258,0 chrXI 489952 . G A 1562 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;QD=13.95;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1595,174,0 chrXI 490017 . A G 1021 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=48.4303;MLEAC=2;MLEAF=1.00;MQ=38.09;MQ0=0;QD=12.01;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1054,117,0 chrXI 490084 . G A 3274.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=23.22;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3274,342,0 chrXI 490196 . G A 1593 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=21.82;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1626,171,0 chrXI 490208 . T C 1457 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=19.17;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1490,165,0 chrXI 490246 . C T 1282 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=67.2114;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=16.65;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1315,141,0 chrXI 490284 . G T 2588 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0642;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=21.75;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2621,273,0 chrXI 490320 . T C 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.769;QD=21.41;ReadPosRankSum=1.679;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:3,132:137:99:2966,306,0 chrXI 490335 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.683;DP=145;Dels=0.00;FS=4.802;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-0.220;QD=22.21;ReadPosRankSum=1.513;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3253,334,0 chrXI 490500 . C T 3407.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.4972;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=23.34;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3407,366,0 chrXI 490578 . A G 3996.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.8896;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.79;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3996,438,0 chrXI 490776 . A C 3228.29 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.96;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3262,360,0 chrXI 490933 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=23.13;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1791,189,0 chrXI 490945 . T A 1476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=4.988;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-1.436;QD=18.00;ReadPosRankSum=1.267;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1509,159,0 chrXI 490946 . T C 1432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=5.174;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;MQRankSum=-0.943;QD=18.13;ReadPosRankSum=1.118;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1465,162,0 chrXI 491070 . A T 2341 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.01;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2374,249,0 chrXI 491161 . T C 2150 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=25.29;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2183,237,0 chrXI 491191 . C T 2105 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.76;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2138,225,0 chrXI 491405 . G A 2595 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.03;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2628,276,0 chrXI 491647 . T A 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=3.131;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.427;QD=23.08;ReadPosRankSum=1.613;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3393,372,0 chrXI 491873 . T C 3427.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.16;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3427,384,0 chrXI 492251 . T C 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=149;Dels=0.00;FS=5.630;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.277;QD=23.05;ReadPosRankSum=2.818;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3434,378,0 chrXI 492262 . G A 3571.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3806;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=23.34;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3571,378,0 chrXI 493137 . G A 4935.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.1763;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.80;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4935,514,0 chrXI 493230 . A G 4033.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.44;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4033,438,0 chrXI 493329 . T C 3768.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.41;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3768,402,0 chrXI 493349 . T C 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=178;Dels=0.00;FS=5.212;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-1.378;QD=22.04;ReadPosRankSum=1.712;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:3923,423,0 chrXI 493599 . T A 1798 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.5486;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.16;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1831,198,0 chrXI 494125 . C A 2883 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8362;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.06;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2916,318,0 chrXI 494147 . A T 3614.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.92;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3614,370,0 chrXI 494237 . T C 3539.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3539,399,0 chrXI 494571 . G A 4023.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.5886;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.98;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4023,429,0 chrXI 494622 . T A 4304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=17.4868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.817;QD=23.78;ReadPosRankSum=1.713;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4304,451,0 chrXI 494737 . G C 3994.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7739;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.92;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3994,441,0 chrXI 495036 . C T 4926.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.91;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4926,517,0 chrXI 495081 . G A 3606.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.09;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3606,387,0 chrXI 495360 . G C 4708.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.5602;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.08;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4708,531,0 chrXI 495546 . C T 4574.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=16.1293;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=22.76;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4574,478,0 chrXI 495774 . G A 4417.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.7545;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4417,477,0 chrXI 495813 . A G 3821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=16.8310;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.421;QD=22.09;ReadPosRankSum=2.392;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3821,423,0 chrXI 495985 . C T 3092 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.97;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3125,324,0 chrXI 496185 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.8273;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.35;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3139,327,0 chrXI 496275 . C T 3439.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.39;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3439,363,0 chrXI 496317 . A T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.95;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3336,351,0 chrXI 496326 . G A 3302.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=21.44;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3302,351,0 chrXI 496395 . A G 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=4.229;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=0.472;QD=18.66;ReadPosRankSum=1.684;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2702,294,0 chrXI 496396 . G A 2801 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=19.73;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2834,297,0 chrXI 496416 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.15;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3116,324,0 chrXI 497181 . C T 4972.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.0535;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.13;SB=-2.826e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4972,529,0 chrXI 497389 . C T 3299.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.08;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3299,340,0 chrXI 497576 . G A 2433 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.08;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2466,261,0 chrXI 497626 . C T 2557 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.04;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2590,279,0 chrXI 497655 . A C 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=4.938;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.163;QD=25.22;ReadPosRankSum=1.699;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2706,285,0 chrXI 497998 . T A 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=129;Dels=0.00;FS=6.401;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.257;QD=24.67;ReadPosRankSum=2.373;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3215,333,0 chrXI 498028 . T A 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=131;Dels=0.00;FS=3.736;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.652;QD=22.66;ReadPosRankSum=1.652;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3002,327,0 chrXI 498076 . A G 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.2867;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.069;QD=21.35;ReadPosRankSum=1.672;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2510,270,0 chrXI 498151 . A T 1858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=92;Dels=0.00;FS=3.033;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=-2.098;QD=20.20;ReadPosRankSum=2.260;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1891,204,0 chrXI 498163 . C T 1969 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.64;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2002,207,0 chrXI 498193 . C T 2165 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.55;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2198,228,0 chrXI 498304 . C T 1524 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.17;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1557,171,0 chrXI 498394 . C T 2145 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.32;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2178,228,0 chrXI 498571 . G C 3022 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3055,330,0 chrXI 498712 . A T 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=8.489;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=0.606;QD=23.82;ReadPosRankSum=2.379;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3358,354,0 chrXI 498730 . G A 3567.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=24.10;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3567,372,0 chrXI 498820 . A G 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=167;Dels=0.00;FS=6.316;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.109;QD=24.06;ReadPosRankSum=2.390;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:2,163:167:99:4018,438,0 chrXI 498942 . C T 3161 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.07;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3194,330,0 chrXI 499266 . A T 5668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=240;Dels=0.00;FS=4.883;HaplotypeScore=13.5430;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-0.592;QD=23.62;ReadPosRankSum=1.688;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,239:240:99:5668,604,0 chrXI 499300 . C T 5481.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=24.58;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5481,571,0 chrXI 499635 . T A 3351.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=194;Dels=0.00;FS=3.957;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=0.036;QD=17.27;ReadPosRankSum=1.714;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3351,354,0 chrXI 499641 . C T 3481.01 SnpCluster AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.5158;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=17.41;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:3481,363,0 chrXI 499645 . A G 3215 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=197;Dels=0.00;FS=2.887;HaplotypeScore=5.9497;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;MQRankSum=-0.746;QD=16.32;ReadPosRankSum=2.425;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:3248,360,0 chrXI 499816 . G A 4950.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=25.26;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4950,537,0 chrXI 499999 . A G 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.199;QD=23.79;ReadPosRankSum=1.633;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4163,453,0 chrXI 500101 . A G 2641 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.38;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2674,291,0 chrXI 500262 . C A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.41;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3354,346,0 chrXI 500383 . T C 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=3.417;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.380;QD=23.67;ReadPosRankSum=1.676;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2944,318,0 chrXI 501200 . A G 880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=38;Dels=0.00;FS=4.337;HaplotypeScore=3.2433;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.185;QD=23.16;ReadPosRankSum=1.641;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:77:913,77,0 chrXI 501258 . A C 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=95;Dels=0.00;FS=8.078;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.516;QD=23.76;ReadPosRankSum=2.344;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:2,91:95:99:2290,249,0 chrXI 501970 . A G 3587.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.6592;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.99;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3587,390,0 chrXI 502007 . A G 3732.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.57;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3732,420,0 chrXI 502040 . T C 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=174;Dels=0.00;FS=3.003;HaplotypeScore=5.9167;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.916;QD=20.51;ReadPosRankSum=2.407;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3569,393,0 chrXI 502121 . T C 3679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=165;Dels=0.00;FS=11.201;HaplotypeScore=16.5742;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.626;QD=22.30;ReadPosRankSum=2.933;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3679,402,0 chrXI 502310 . A G 4027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=174;Dels=0.00;FS=8.330;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.416;QD=23.14;ReadPosRankSum=2.365;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:4027,441,0 chrXI 502603 . A G 4265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=4.406;HaplotypeScore=11.2697;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.590;QD=24.65;ReadPosRankSum=1.712;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:4265,465,0 chrXI 502693 . C T 4003.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.01;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4003,441,0 chrXI 503144 . A T 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=2.748;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.482;QD=21.70;ReadPosRankSum=2.345;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3602,384,0 chrXI 503229 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.1005;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.97;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3404,363,0 chrXI 503321 . T C 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=3.010;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.229;QD=22.35;ReadPosRankSum=1.704;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2827,309,0 chrXI 503357 . A G 2479 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0233;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=23.17;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2512,273,0 chrXI 503387 . C T 2364 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.89;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2397,249,0 chrXI 503396 . G C 2494 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.61;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2527,279,0 chrXI 503597 . T A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.37;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3436,378,0 chrXI 503800 . C T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.22;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3599,375,0 chrXI 504002 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2946,306,0 chrXI 504362 . T C 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.470;QD=22.41;ReadPosRankSum=1.644;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2722,297,0 chrXI 505177 . T C 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=170;Dels=0.00;FS=3.031;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.154;QD=21.51;ReadPosRankSum=2.347;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:3657,405,0 chrXI 506614 . A G 4854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.343;QD=22.37;ReadPosRankSum=1.668;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:4854,534,0 chrXI 507899 . C G 3919.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.80;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3919,426,0 chrXI 508894 . T C 5117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=232;Dels=0.00;FS=3.086;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.209;QD=22.06;ReadPosRankSum=1.717;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5117,561,0 chrXI 508942 . C T 7562.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=12.2677;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.64;SB=-4.248e+03 GT:AD:DP:GQ:PL 1/1:0,333:334:99:7562,831,0 chrXI 509442 . T G 4141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=175;Dels=0.00;FS=2.562;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.747;QD=23.66;ReadPosRankSum=2.888;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:3,168:175:99:4141,453,0 chrXI 509930 . T C 3638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=161;Dels=0.00;FS=4.006;HaplotypeScore=15.5698;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-1.431;QD=22.60;ReadPosRankSum=1.668;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3638,396,0 chrXI 510259 . C T 4618.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4618,490,0 chrXI 510755 . A T 3373.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.95;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3373,357,0 chrXI 511186 . A G 4605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=192;Dels=0.00;FS=2.847;HaplotypeScore=12.8249;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.237;QD=23.98;ReadPosRankSum=2.386;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4605,498,0 chrXI 511291 . C T 3303.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.59;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3303,348,0 chrXI 511327 . A G 3070 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.9975;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.09;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3103,333,0 chrXI 511345 . A C 2874 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.53;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2907,330,0 chrXI 511387 . G A 3313.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.9850;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.23;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3313,351,0 chrXI 511693 . T C 4052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=176;Dels=0.00;FS=4.145;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.334;QD=23.02;ReadPosRankSum=1.652;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:4052,438,0 chrXI 511838 . A T 49.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=119.8530;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=0.782;QD=0.39;ReadPosRankSum=2.863;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:3,124:127:9:82,9,0 chrXI 511926 . T A 2278 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=18.1978;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.98;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2311,237,0 chrXI 512206 . T C 4962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.283;DP=217;Dels=0.00;FS=9.027;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.535;QD=22.87;ReadPosRankSum=3.404;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:4,213:217:99:4962,543,0 chrXI 512425 . G C 3334.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.71;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:3334,372,0 chrXI 512449 . A G 2858 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.85;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2891,312,0 chrXI 513002 . T C 4508.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.2446;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.65;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4508,492,0 chrXI 513184 . C T 4224.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=22.59;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4224,453,0 chrXI 513535 . C A 2577 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.64;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2610,270,0 chrXI 513762 . C T 3573.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.61;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3573,373,0 chrXI 513863 . A G 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=138;Dels=0.00;FS=3.659;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.55;MQ0=0;MQRankSum=-1.606;QD=23.27;ReadPosRankSum=1.656;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3244,354,0 chrXI 513942 . T A 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=3.454;HaplotypeScore=15.4859;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.336;QD=22.70;ReadPosRankSum=1.712;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3996,432,0 chrXI 514126 . T G 4136.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4177;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.63;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4136,450,0 chrXI 514792 . C T 4714.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.4496;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=23.00;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4714,504,0 chrXI 515018 . C T 4080.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=25.82;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:4080,418,0 chrXI 515560 . C A 5364.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=23.1802;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.95;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5364,573,0 chrXI 516074 . A G 5585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=234;Dels=0.00;FS=9.213;HaplotypeScore=24.8916;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.375;QD=23.87;ReadPosRankSum=2.407;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:2,231:234:99:5585,601,0 chrXI 516354 . C G 5726.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=17.6277;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.85;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:5726,630,0 chrXI 516582 . T C 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=133;Dels=0.00;FS=6.601;HaplotypeScore=12.2127;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.438;QD=21.54;ReadPosRankSum=2.357;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:2898,315,0 chrXI 516614 . G C 3336.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.25;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3336,360,0 chrXI 517143 . T C 2496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.1994;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.470;QD=24.23;ReadPosRankSum=2.354;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2529,270,0 chrXI 517282 . T C 1996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.02;FS=4.133;HaplotypeScore=5.6114;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;MQRankSum=0.326;QD=19.38;ReadPosRankSum=1.698;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2029,222,0 chrXI 517297 . C G 2197 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=22.65;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2230,243,0 chrXI 517345 . A G 2948 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=23.97;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2981,321,0 chrXI 517456 . G T 138.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;DP=54;Dels=0.00;FS=6.419;HaplotypeScore=7.8108;MLEAC=1;MLEAF=0.500;MQ=25.93;MQ0=34;MQRankSum=0.454;QD=2.56;ReadPosRankSum=-3.674;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,18:54:99:168,0,175 chrXI 517850 . A G 1595 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.73;MQ0=0;QD=16.61;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1628,180,0 chrXI 517853 . G A 1660 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=42.57;MQ0=0;QD=16.27;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1693,177,0 chrXI 518114 . T C 393.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.211;DP=93;Dels=0.00;FS=41.052;HaplotypeScore=35.7328;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=2;MQRankSum=2.756;QD=4.23;ReadPosRankSum=1.454;SB=-2.321e+02 GT:AD:DP:GQ:PL 1/1:41,51:93:21:426,21,0 chrXI 518139 . T C 284.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.349;DP=132;Dels=0.00;FS=0.827;HaplotypeScore=21.4703;MLEAC=1;MLEAF=0.500;MQ=54.53;MQ0=1;MQRankSum=2.322;QD=2.15;ReadPosRankSum=5.028;SB=-3.790e+02 GT:AD:DP:GQ:PL 0/1:61,70:132:73:314,0,73 chrXI 518221 . C T 7173.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.76;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,268:268:99:7173,760,0 chrXI 518633 . T A 7008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.003;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=17.3726;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.517;QD=23.92;ReadPosRankSum=-1.732;SB=-3.563e+03 GT:AD:DP:GQ:PL 1/1:1,292:293:99:7008,733,0 chrXI 519799 . C T 6081.01 filter AC=2;AF=1.00;AN=2;DP=447;Dels=0.00;FS=0.000;HaplotypeScore=25.3185;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=13.60;SB=-5.178e+03 GT:AD:DP:GQ:PL 1/1:1,446:447:99:6081,649,0 chrXI 519829 . T C 7061.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.362;DP=454;Dels=0.00;FS=9.047;HaplotypeScore=31.4700;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.740;QD=15.55;ReadPosRankSum=3.378;SB=-5.787e+03 GT:AD:DP:GQ:PL 1/1:4,448:454:99:7061,786,0 chrXI 519910 . G A 8880.01 filter AC=2;AF=1.00;AN=2;DP=384;Dels=0.00;FS=0.000;HaplotypeScore=15.1697;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.13;SB=-3.731e+03 GT:AD:DP:GQ:PL 1/1:0,384:384:99:8880,967,0 chrXI 520210 . T C 8067.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.275;DP=376;Dels=0.00;FS=12.444;HaplotypeScore=21.9130;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.557;QD=21.45;ReadPosRankSum=3.411;SB=-4.686e+03 GT:AD:DP:GQ:PL 1/1:4,369:376:99:8067,903,0 chrXI 521539 . G C 6784.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=14.0321;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.23;SB=-3.680e+03 GT:AD:DP:GQ:PL 1/1:0,288:292:99:6784,739,0 chrXI 522018 . T C 4606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=198;Dels=0.00;FS=5.730;HaplotypeScore=9.6754;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.209;QD=23.26;ReadPosRankSum=2.913;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:3,194:198:99:4606,498,0 chrXI 522153 . G A 7518.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=11.7764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,291:291:99:7518,781,0 chrXI 522994 . C A 6714.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=12.6184;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.96;SB=-3.325e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:6714,697,0 chrXI 523140 . T C 4507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=4.372;HaplotypeScore=9.1616;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=1.182;QD=21.67;ReadPosRankSum=1.699;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4507,483,0 chrXI 523152 . A C 4512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=214;Dels=0.00;FS=2.558;HaplotypeScore=10.5485;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.684;QD=21.08;ReadPosRankSum=2.826;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:3,211:214:99:4512,489,0 chrXI 523718 . G A 4090.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=13.86;SB=-3.645e+03 GT:AD:DP:GQ:PL 1/1:0,295:295:99:4090,427,0 chrXI 523996 . A G 2813 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.4926;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.67;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2846,318,0 chrXI 524179 . G A 2522 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=21.19;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2555,267,0 chrXI 524191 . A G 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=4.849;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;MQRankSum=-0.751;QD=16.99;ReadPosRankSum=1.701;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1953,210,0 chrXI 524202 . G A 1984 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=15.75;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2017,216,0 chrXI 524346 . A G 4283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=192;Dels=0.00;FS=4.275;HaplotypeScore=10.0991;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.930;QD=22.31;ReadPosRankSum=1.641;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:4283,486,0 chrXI 524433 . C T 6392.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=15.9395;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.16;SB=-3.148e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:6392,670,0 chrXI 524487 . G A 6486.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=19.1131;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.50;SB=-3.015e+03 GT:AD:DP:GQ:PL 1/1:0,274:276:99:6486,673,0 chrXI 524976 . A G 4513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.960;QD=22.34;ReadPosRankSum=1.715;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4513,495,0 chrXI 527413 . T C 4606.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.62;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4606,504,0 chrXI 527464 . C A 5168.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.3347;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=24.04;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5168,544,0 chrXI 527498 . G C 4885.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=23.71;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4885,537,0 chrXI 527511 . A G 4569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.01;FS=0.000;HaplotypeScore=12.3930;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=-0.647;QD=22.85;ReadPosRankSum=1.680;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4569,504,0 chrXI 527595 . A G 4133.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=20.77;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4133,453,0 chrXI 527629 . T C 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=192;Dels=0.00;FS=8.017;HaplotypeScore=3.1473;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=-1.561;QD=16.64;ReadPosRankSum=2.345;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:2,187:192:99:3227,360,0 chrXI 527630 . C A 3337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=-1.757;QD=17.56;ReadPosRankSum=2.358;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:3,187:190:99:3337,342,0 chrXI 527758 . G T 1806 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.67;MQ0=0;QD=13.38;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1839,198,0 chrXI 527769 . C T 1589 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.08;MQ0=0;QD=10.19;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:1622,171,0 chrXI 527775 . T A 1576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;MQRankSum=-0.751;QD=9.44;ReadPosRankSum=1.711;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:1609,177,0 chrXI 527820 . A G 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=199;Dels=0.00;FS=9.242;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=-0.611;QD=15.25;ReadPosRankSum=2.425;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:3067,348,0 chrXI 527855 . C T 4620.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.6307;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=22.11;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4620,501,0 chrXI 527982 . G A 8076.01 PASS AC=2;AF=1.00;AN=2;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=9.8291;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=23.68;SB=-3.326e+03 GT:AD:DP:GQ:PL 1/1:0,339:341:99:8076,900,0 chrXI 528174 . G A 6995.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=11.4420;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.24;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,298:301:99:6995,739,0 chrXI 528205 . G A 6841.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=11.8690;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.67;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,288:289:99:6841,727,0 chrXI 528277 . A C 6276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=31.5253;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.169;QD=22.18;ReadPosRankSum=1.695;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:1,276:283:99:6276,711,0 chrXI 528401 . C G 4200.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=16.5195;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.76;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4200,459,0 chrXI 529043 . G A 5120.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=17.4177;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.10;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5120,550,0 chrXI 529080 . A C 5210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=222;Dels=0.00;FS=4.266;HaplotypeScore=19.9072;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.214;QD=23.47;ReadPosRankSum=1.700;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:1,218:222:99:5210,573,0 chrXI 529548 . C G 4680.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.4830;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.94;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4680,510,0 chrXI 530614 . A T 2243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.148;DP=98;Dels=0.00;FS=3.048;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.595;QD=22.89;ReadPosRankSum=2.349;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2276,243,0 chrXI 531524 . C T 4324.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.14;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4324,457,0 chrXI 531608 . C T 3576.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.0578;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.83;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3576,381,0 chrXI 532628 . C T 4513.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.07;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4513,475,0 chrXI 535201 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.16;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3428,372,0 chrXI 535267 . C T 2588 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.50;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2621,273,0 chrXI 535579 . G T 3797.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=16.5053;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.58;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3797,411,0 chrXI 535712 . T C 4075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.999;QD=21.45;ReadPosRankSum=1.714;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4075,438,0 chrXI 536945 . A G 2859 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2892,315,0 chrXI 537672 . G A 4260.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.82;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4260,448,0 chrXI 538327 . T C 3098 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3131,336,0 chrXI 538650 . C A 3656.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.3462;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.44;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3656,387,0 chrXI 539120 . T C 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.345;DP=141;Dels=0.00;FS=5.276;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.069;QD=23.52;ReadPosRankSum=3.358;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:4,135:141:99:3316,363,0 chrXI 539491 . C T 4465.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=15.5559;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4465,474,0 chrXI 539613 . C T 4224.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.70;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4224,442,0 chrXI 539661 . G A 4424.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4424,471,0 chrXI 539877 . A G 4581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.082;QD=23.98;ReadPosRankSum=1.678;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4581,501,0 chrXI 540072 . T C 3203 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.55;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3236,360,0 chrXI 540326 . C T 2604 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3358;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2637,291,0 chrXI 540723 . C T 3718.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.3567;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.24;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3718,390,0 chrXI 540875 . G C 2705 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.34;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2738,306,0 chrXI 540879 . G A 2930 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=22.03;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2963,318,0 chrXI 540987 . C A 2642 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.6228;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2675,291,0 chrXI 541354 . C T 3188 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.5308;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.99;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3221,342,0 chrXI 541571 . G C 3904.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.87;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3904,423,0 chrXI 541941 . G C 2524 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.7656;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.14;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2557,288,0 chrXI 541976 . T C 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.979;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.386;QD=24.10;ReadPosRankSum=1.010;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2925,315,0 chrXI 542352 . C T 2709 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2742,297,0 chrXI 542597 . T C 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=124;Dels=0.00;FS=6.640;HaplotypeScore=11.1534;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.438;QD=18.25;ReadPosRankSum=2.390;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2296,252,0 chrXI 542924 . G C 3033 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.6125;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.63;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3066,333,0 chrXI 542955 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=24.52;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3073,324,0 chrXI 543193 . A G 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=7.3707;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-1.533;QD=19.56;ReadPosRankSum=1.707;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2791,300,0 chrXI 543203 . G A 2725 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0585;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.06;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2758,288,0 chrXI 543396 . C T 2725 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.33;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2758,288,0 chrXI 543609 . A T 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.433;QD=23.11;ReadPosRankSum=1.670;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2644,282,0 chrXI 543951 . T C 2466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.767;DP=109;Dels=0.00;FS=5.980;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.019;QD=22.62;ReadPosRankSum=2.823;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:3,105:109:99:2499,267,0 chrXI 544557 . G A 3811.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.58;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3811,408,0 chrXI 545152 . G T 3873.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=25.31;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3873,403,0 chrXI 545405 . T C 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=3.844;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-1.320;QD=23.02;ReadPosRankSum=1.677;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2956,318,0 chrXI 545416 . G A 2657 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=21.96;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2690,279,0 chrXI 545424 . A G 2395 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.13;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2428,267,0 chrXI 545874 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.03;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3364,357,0 chrXI 545963 . T C 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.687;QD=23.88;ReadPosRankSum=1.705;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,126:130:99:3137,336,0 chrXI 546113 . C T 2571 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.81;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2604,279,0 chrXI 546387 . C A 2209 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=23.50;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2242,240,0 chrXI 546403 . G A 2437 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.95;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2470,264,0 chrXI 546444 . G A 2591 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.53;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2624,282,0 chrXI 546501 . C T 2711 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.04;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2744,288,0 chrXI 546559 . C T 1745 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.7199;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.18;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1778,183,0 chrXI 546566 . T C 1788 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.24;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1821,207,0 chrXI 547133 . A G 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=135;Dels=0.00;FS=3.039;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.743;QD=23.72;ReadPosRankSum=2.395;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:3235,345,0 chrXI 547574 . T A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.64;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3972,409,0 chrXI 548010 . T G 5089.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.56;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5089,549,0 chrXI 548064 . C T 5124.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.08;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5124,564,0 chrXI 548175 . A G 5150.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.2277;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.18;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:5150,555,0 chrXI 548301 . A C 6107.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=17.4896;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.40;SB=-2.986e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:6107,666,0 chrXI 548668 . C T 4750.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=17.1454;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.87;SB=-2.723e+03 GT:AD:DP:GQ:PL 1/1:0,195:199:99:4750,496,0 chrXI 548697 . A G 3980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.934;QD=23.83;ReadPosRankSum=1.690;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3980,426,0 chrXI 549094 . A T 2310 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=19.09;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2343,243,0 chrXI 549098 . T A 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=120;Dels=0.00;FS=7.867;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-1.366;QD=18.66;ReadPosRankSum=2.408;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2272,237,0 chrXI 549235 . T G 1889 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=22.22;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1922,216,0 chrXI 549266 . G A 2052 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=23.59;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2085,222,0 chrXI 549422 . G A 2035 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=20.15;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2068,219,0 chrXI 549435 . G T 1696 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;QD=18.43;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1729,186,0 chrXI 549438 . C T 1651 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.13;MQ0=0;QD=17.38;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1684,183,0 chrXI 549444 . C A 1378 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.04;MQ0=0;QD=15.14;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1411,153,0 chrXI 549464 . A C 1665 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=85.0756;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=0;QD=15.71;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1698,186,0 chrXI 549543 . G A 3415.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.39;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3415,352,0 chrXI 549575 . C T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.1402;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=25.76;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3272,339,0 chrXI 549752 . G A 3878.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.6521;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=24.39;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3878,414,0 chrXI 550068 . T C 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=126;Dels=0.00;FS=7.570;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.049;QD=21.49;ReadPosRankSum=2.372;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2741,306,0 chrXI 550089 . C T 2974 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.42;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3007,318,0 chrXI 550227 . T C 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.164;QD=23.20;ReadPosRankSum=1.631;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3212,360,0 chrXI 550278 . C T 3932.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.5093;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=25.37;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3932,417,0 chrXI 550329 . A G 3664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=159;Dels=0.00;FS=4.161;HaplotypeScore=9.7355;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.689;QD=23.04;ReadPosRankSum=1.667;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3664,405,0 chrXI 550359 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.41;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3100,327,0 chrXI 550408 . T A 3204 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.56;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3237,336,0 chrXI 551004 . C T 3080 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.06;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3113,336,0 chrXI 551284 . C T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=24.48;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3794,411,0 chrXI 551349 . T C 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.588;DP=155;Dels=0.00;FS=12.639;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-1.660;QD=22.88;ReadPosRankSum=2.419;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:3,151:155:99:3546,368,0 chrXI 551500 . T G 3065 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=21.89;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3098,339,0 chrXI 551510 . A G 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.042;HaplotypeScore=7.5823;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=-0.341;QD=15.83;ReadPosRankSum=1.555;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2234,272,0 chrXI 551512 . G T 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=138;Dels=0.00;FS=6.246;HaplotypeScore=7.5823;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;MQRankSum=-0.745;QD=15.23;ReadPosRankSum=2.127;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:2135,260,0 chrXI 551593 . C T 2476 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=23.81;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2509,264,0 chrXI 551608 . G A 2241 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.75;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2274,249,0 chrXI 551609 . A T 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.661;QD=21.83;ReadPosRankSum=1.638;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2434,261,0 chrXI 551750 . T C 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=145;Dels=0.00;FS=5.971;HaplotypeScore=10.5590;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=0.035;QD=23.46;ReadPosRankSum=2.924;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3402,375,0 chrXI 551893 . C T 3274.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.07;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3274,345,0 chrXI 552248 . A G 4703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.096;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.016;QD=20.27;ReadPosRankSum=2.407;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:2,227:232:99:4703,507,0 chrXI 552591 . C A 3230.05 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3263,342,0 chrXI 552756 . C G 4309.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.68;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4309,468,0 chrXI 552927 . G A 4733.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.2866;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=23.09;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4733,487,0 chrXI 552941 . C T 3943.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=20.97;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:3943,415,0 chrXI 552953 . A C 3677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.205;DP=182;Dels=0.00;FS=2.923;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=0.034;QD=20.20;ReadPosRankSum=2.422;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:3677,396,0 chrXI 552998 . A G 3180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.6223;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.057;QD=20.92;ReadPosRankSum=1.663;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3213,345,0 chrXI 553084 . A G 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.365;DP=150;Dels=0.00;FS=9.209;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.779;QD=23.23;ReadPosRankSum=3.389;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:4,146:150:99:3485,387,0 chrXI 553304 . T A 3631.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.2877;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.28;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3631,393,0 chrXI 553630 . C T 4148.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=23.0017;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4148,438,0 chrXI 553687 . A T 4599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=199;Dels=0.00;FS=3.946;HaplotypeScore=10.6679;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.230;QD=23.11;ReadPosRankSum=1.697;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4599,507,0 chrXI 553738 . C T 4051.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.3792;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.02;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4051,441,0 chrXI 553992 . T C 3913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=169;Dels=0.00;FS=3.006;HaplotypeScore=12.1352;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.769;QD=23.15;ReadPosRankSum=2.390;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:2,164:169:99:3913,429,0 chrXI 554162 . G A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=20.25;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3321,357,0 chrXI 554163 . G A 3428.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=20.65;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3428,357,0 chrXI 554185 . A G 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=170;Dels=0.00;FS=3.021;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.241;QD=17.93;ReadPosRankSum=2.420;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:3081,339,0 chrXI 554227 . A G 4107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=188;Dels=0.00;FS=3.557;HaplotypeScore=7.9534;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.968;QD=21.85;ReadPosRankSum=1.695;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:4107,438,0 chrXI 554305 . C G 3392.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.46;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3392,384,0 chrXI 554493 . C T 3004 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.11;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3037,327,0 chrXI 554905 . G A 3008 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=25.07;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3041,318,0 chrXI 554945 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;MQRankSum=-0.954;QD=23.79;ReadPosRankSum=1.657;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,137:141:99:3355,372,0 chrXI 555214 . T C 2159 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.840;DP=268;Dels=0.00;FS=96.712;HaplotypeScore=11.4157;MLEAC=2;MLEAF=1.00;MQ=20.23;MQ0=143;MQRankSum=2.038;QD=8.06;ReadPosRankSum=4.117;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,262:268:99:2192,234,0 chrXI 556475 . A T 671 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=16.37;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:75:704,75,0 chrXI 556484 . A G 942 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.8097;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=17.77;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:53:99:975,108,0 chrXI 556642 . C T 2791 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=27.36;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2824,297,0 chrXI 556988 . G A 3021 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:3054,327,0 chrXI 557093 . T C 2937 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.7974;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.59;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2970,330,0 chrXI 557299 . G A 2062 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2095,216,0 chrXI 557561 . G A 2240 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.40;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2273,240,0 chrXI 558462 . A G 2882 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.19;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2915,324,0 chrXI 558496 . A G 3374.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.91;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3374,366,0 chrXI 558543 . C T 2903 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.88;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2936,318,0 chrXI 558670 . T C 3617.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.4272;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.49;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3617,393,0 chrXI 558690 . T C 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=165;Dels=0.00;FS=2.937;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.186;QD=22.81;ReadPosRankSum=2.420;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3763,408,0 chrXI 559017 . G A 4813.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.60;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4813,502,0 chrXI 559170 . C T 3285.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3285,342,0 chrXI 559244 . A C 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.3109;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.288;QD=23.54;ReadPosRankSum=1.676;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2976,324,0 chrXI 559313 . C T 2180 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2213,237,0 chrXI 559410 . G A 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.296;QD=24.53;ReadPosRankSum=1.684;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3581,356,0 chrXI 559504 . T A 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.218;QD=24.27;ReadPosRankSum=1.698;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2533,273,0 chrXI 559595 . G A 3805.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.8327;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.49;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,158:162:99:3805,397,0 chrXI 559615 . G A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.00;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3912,417,0 chrXI 560154 . A G 3888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=161;Dels=0.00;FS=3.203;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.173;QD=24.15;ReadPosRankSum=1.625;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3888,426,0 chrXI 560580 . G A 3900.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3900,411,0 chrXI 560783 . A G 3526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=144;Dels=0.00;FS=3.010;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.504;QD=24.49;ReadPosRankSum=2.415;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3526,378,0 chrXI 561215 . A C 2817 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2850,306,0 chrXI 561764 . G T 4728.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.4019;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.76;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4728,502,0 chrXI 561833 . T A 5102.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.9412;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.73;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5102,535,0 chrXI 561959 . G A 6017.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=7.4293;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.07;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:6017,657,0 chrXI 562081 . C T 5672.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=21.3201;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.55;SB=-2.783e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5672,589,0 chrXI 562470 . G T 3141 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.13;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3174,330,0 chrXI 562621 . G T 4789.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=18.2525;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,187:191:99:4789,522,0 chrXI 562700 . G T 4413.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.47;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4413,474,0 chrXI 562768 . T C 3711.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.4594;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.21;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3711,405,0 chrXI 562948 . G A 3567.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.0435;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.30;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3567,375,0 chrXI 563008 . C T 4226.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.92;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:4226,445,0 chrXI 563181 . G A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.97;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3376,349,0 chrXI 563339 . G A 3132 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.86;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3165,333,0 chrXI 563365 . T C 2580 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7097;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.86;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2613,288,0 chrXI 563390 . G A 2414 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.15;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2447,255,0 chrXI 563812 . T C 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=126;Dels=0.00;FS=6.710;HaplotypeScore=6.5207;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=2.115;QD=23.21;ReadPosRankSum=1.859;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2957,321,0 chrXI 564676 . C T 2434 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2467,264,0 chrXI 564715 . T G 2374 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.26;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2407,258,0 chrXI 565014 . T C 2998 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3031,336,0 chrXI 565671 . A G 5386.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.52;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5386,579,0 chrXI 565873 . C T 3122 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.46;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3155,330,0 chrXI 566530 . T C 4728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=227;Dels=0.00;FS=5.955;HaplotypeScore=9.9470;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.080;QD=20.83;ReadPosRankSum=2.889;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:3,223:227:99:4728,531,0 chrXI 566551 . T C 4960.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=11.6406;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=20.16;SB=-2.820e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:4960,546,0 chrXI 566653 . G A 5089.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.42;SB=-2.869e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:5089,544,0 chrXI 567055 . G A 7664.01 PASS AC=2;AF=1.00;AN=2;DP=344;Dels=0.00;FS=0.000;HaplotypeScore=9.9830;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.28;SB=-3.346e+03 GT:AD:DP:GQ:PL 1/1:0,344:344:99:7664,817,0 chrXI 567076 . T G 6621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=333;Dels=0.00;FS=7.768;HaplotypeScore=10.8421;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.694;QD=19.88;ReadPosRankSum=2.389;SB=-3.456e+03 GT:AD:DP:GQ:PL 1/1:2,325:333:99:6621,732,0 chrXI 567329 . C T 4165.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.0994;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=23.53;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4165,444,0 chrXI 567597 . G C 3882.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=20.76;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3882,432,0 chrXI 567598 . T G 3846.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.79;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3846,429,0 chrXI 567633 . C T 3640.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=19.89;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3640,393,0 chrXI 567814 . T C 3548.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=16.1489;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.04;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3548,393,0 chrXI 567877 . A G 3769.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6321;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.98;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3769,408,0 chrXI 567960 . C G 4288.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.66;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4288,471,0 chrXI 568028 . A G 4207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=184;Dels=0.00;FS=9.247;HaplotypeScore=14.9535;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.792;QD=22.86;ReadPosRankSum=2.831;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:4207,474,0 chrXI 568283 . T C 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.269;DP=184;Dels=0.00;FS=15.239;HaplotypeScore=16.0151;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.196;QD=20.77;ReadPosRankSum=3.383;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:4,179:184:99:3822,420,0 chrXI 568316 . T C 4279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=3.578;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.520;QD=21.61;ReadPosRankSum=1.679;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4279,465,0 chrXI 568337 . C T 4042.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.0219;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.50;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4042,438,0 chrXI 568472 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.0991;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.63;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3133,330,0 chrXI 568502 . T C 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=152;Dels=0.00;FS=6.103;HaplotypeScore=12.1111;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.913;QD=21.88;ReadPosRankSum=2.874;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:3,148:152:99:3325,375,0 chrXI 568908 . G A 3848.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3848,414,0 chrXI 569085 . T C 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=132;Dels=0.00;FS=3.286;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.492;QD=21.25;ReadPosRankSum=1.679;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2838,306,0 chrXI 569390 . T C 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.9092;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.277;QD=23.39;ReadPosRankSum=1.712;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4094,450,0 chrXI 569468 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.37;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3575,381,0 chrXI 569486 . G A 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.196;DP=155;Dels=0.00;FS=3.095;HaplotypeScore=4.7712;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.553;QD=22.74;ReadPosRankSum=1.062;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3524,375,0 chrXI 569825 . T G 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.470;QD=21.63;ReadPosRankSum=1.663;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3309,378,0 chrXI 570049 . G A 2540 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.90;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2573,273,0 chrXI 570688 . T C 4015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=180;Dels=0.00;FS=6.092;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.715;QD=22.31;ReadPosRankSum=2.961;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:4015,438,0 chrXI 570771 . G A 4734.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.33;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4734,507,0 chrXI 570835 . A G 4488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=206;Dels=0.00;FS=2.629;HaplotypeScore=14.9785;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=0.720;QD=21.79;ReadPosRankSum=2.329;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:2,201:206:99:4488,489,0 chrXI 571008 . T C 3933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.9283;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-0.675;QD=25.54;ReadPosRankSum=1.687;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3933,414,0 chrXI 571051 . G A 3693.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=23.23;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3693,393,0 chrXI 571067 . G A 3341.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=21.15;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3341,360,0 chrXI 571088 . T C 3136 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.19;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3169,333,0 chrXI 573116 . G A 5341.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=11.4339;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.25;SB=-2.917e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5341,565,0 chrXI 577426 . G A 4160.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.0769;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=24.47;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4160,447,0 chrXI 577769 . T C 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=3.460;HaplotypeScore=9.3390;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=0.390;QD=21.98;ReadPosRankSum=1.712;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3824,411,0 chrXI 577779 . G T 3674.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.00;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3674,384,0 chrXI 578824 . T C 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=139;Dels=0.00;FS=3.036;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.345;QD=21.78;ReadPosRankSum=2.344;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3061,339,0 chrXI 578904 . G C 3128 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.06;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3161,336,0 chrXI 578942 . G A 2464 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.87;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2497,270,0 chrXI 579541 . T C 2684 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.9098;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.13;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2717,306,0 chrXI 579792 . T C 1944 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.14;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1977,219,0 chrXI 580625 . T C 4995.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=15.0629;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=21.62;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:4995,546,0 chrXI 580782 . G T 2898 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=6.4548;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;QD=22.82;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2931,321,0 chrXI 580794 . G A 3022 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.99;MQ0=0;QD=23.07;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3055,321,0 chrXI 580811 . T C 2745 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=22.87;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2778,300,0 chrXI 580815 . A G 2595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.05;MQ0=0;MQRankSum=0.157;QD=21.45;ReadPosRankSum=1.675;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2628,285,0 chrXI 580836 . G A 2011 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=0;QD=21.17;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2044,216,0 chrXI 580840 . G A 1954 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=21.47;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1987,207,0 chrXI 581030 . A T 1124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=9.700;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=-0.325;QD=19.72;ReadPosRankSum=2.364;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1157,126,0 chrXI 581046 . G A 1097 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=20.31;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1130,120,0 chrXI 581058 . A G 1050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=4.486;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;MQRankSum=-1.615;QD=17.80;ReadPosRankSum=1.615;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1083,120,0 chrXI 581163 . T C 1078 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.14;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1111,126,0 chrXI 581198 . A C 1295 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.04;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1328,147,0 chrXI 581266 . C T 1461 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=19.74;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1494,159,0 chrXI 581390 . A G 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=135;Dels=0.00;FS=12.273;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.596;QD=23.36;ReadPosRankSum=2.340;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:2,132:135:99:3186,348,0 chrXI 581429 . C T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.1554;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.19;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3451,360,0 chrXI 581619 . C T 4683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=17.0531;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-0.956;QD=24.02;ReadPosRankSum=0.198;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:1,191:195:99:4683,493,0 chrXI 581777 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=21.71;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3300,360,0 chrXI 581789 . G A 3208 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=21.68;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3241,336,0 chrXI 581803 . T G 2797 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.6469;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=19.42;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2830,315,0 chrXI 581827 . G A 2551 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=17.35;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2584,276,0 chrXI 581871 . T C 2206 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=15.01;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2239,246,0 chrXI 581872 . T A 2271 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=15.45;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2304,246,0 chrXI 581882 . T C 2075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=150;Dels=0.00;FS=12.520;HaplotypeScore=112.2358;MLEAC=2;MLEAF=1.00;MQ=33.36;MQ0=0;MQRankSum=-2.940;QD=13.83;ReadPosRankSum=2.953;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:2108,228,0 chrXI 581924 . C A 2442 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=16.73;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2475,258,0 chrXI 581940 . C T 2480 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=17.46;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2513,273,0 chrXI 581974 . T C 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=137;Dels=0.00;FS=3.031;HaplotypeScore=5.3312;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=-0.852;QD=23.42;ReadPosRankSum=2.342;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3242,354,0 chrXI 582062 . C G 3335.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=23.82;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3335,363,0 chrXI 582207 . A G 4773.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.0584;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.75;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4773,516,0 chrXI 582468 . C T 5795.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.87;SB=-3.019e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5795,607,0 chrXI 582756 . C T 4794.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=15.1878;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.97;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4794,505,0 chrXI 582939 . C T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.4240;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.21;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3354,366,0 chrXI 583125 . T C 2397 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.6069;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.66;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2430,267,0 chrXI 583147 . A C 2338 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.9446;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=19.81;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2371,264,0 chrXI 583320 . C T 2674 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.46;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2707,294,0 chrXI 583405 . A T 1734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=94;Dels=0.00;FS=2.960;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.197;QD=18.45;ReadPosRankSum=2.319;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1767,183,0 chrXI 583415 . C T 1914 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.9835;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.14;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1947,210,0 chrXI 583572 . C T 3068 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.54;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3101,330,0 chrXI 583793 . G T 3353.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.70;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3353,354,0 chrXI 584258 . C T 3916.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.25;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3916,420,0 chrXI 584345 . T C 3534.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7316;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.09;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3534,384,0 chrXI 584366 . A C 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=178;Dels=0.00;FS=3.857;HaplotypeScore=10.5316;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=0.247;QD=20.99;ReadPosRankSum=1.712;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,174:178:99:3736,408,0 chrXI 584432 . T C 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.383;DP=209;Dels=0.00;FS=8.935;HaplotypeScore=8.0751;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=0.055;QD=18.17;ReadPosRankSum=3.315;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:4,202:209:99:3798,402,0 chrXI 584438 . G A 3726.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=18.00;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:3726,405,0 chrXI 584447 . C T 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=0.843;QD=18.80;ReadPosRankSum=0.172;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3591,378,0 chrXI 584769 . A T 2505 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.77;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2538,264,0 chrXI 584944 . G A 4697.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.4968;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.54;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4697,490,0 chrXI 585032 . C T 4118.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.250;DP=188;Dels=0.00;FS=3.528;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=-1.695;QD=21.90;ReadPosRankSum=-1.473;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4118,422,0 chrXI 585038 . C A 4292.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=22.47;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4292,453,0 chrXI 585048 . G A 4136.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=21.43;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4136,444,0 chrXI 585055 . G A 4570.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=22.08;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4570,478,0 chrXI 585134 . G T 4513.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.70;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4513,486,0 chrXI 585254 . T C 3013 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3441;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=23.54;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3046,336,0 chrXI 585338 . T C 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=3.326;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.185;QD=24.06;ReadPosRankSum=1.671;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2776,300,0 chrXI 585479 . A G 2721 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.61;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2754,306,0 chrXI 585500 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.74;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2903,306,0 chrXI 585764 . T C 2575 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=23.20;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2608,282,0 chrXI 585824 . T C 2110 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=20.49;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2143,240,0 chrXI 585831 . T C 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;MQRankSum=0.289;QD=20.17;ReadPosRankSum=1.700;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,107:111:99:2272,237,0 chrXI 585840 . G A 2365 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.87;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2398,252,0 chrXI 585929 . C A 4218.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.5264;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.10;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4218,442,0 chrXI 586057 . G A 4185.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=24.62;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4185,447,0 chrXI 586172 . G A 4692.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4692,493,0 chrXI 586366 . T C 2935 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2968,330,0 chrXI 588209 . G T 2656 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.0797;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2689,291,0 chrXI 588930 . T C 4137.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=16.5934;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.01;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,183:188:99:4137,453,0 chrXI 589078 . A G 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=3.501;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.207;QD=23.89;ReadPosRankSum=1.710;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3823,420,0 chrXI 589814 . C T 3717.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.9216;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.53;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3717,390,0 chrXI 589929 . C G 2855 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=16.6174;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.69;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2888,321,0 chrXI 590322 . A G 4097.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.68;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4097,441,0 chrXI 590961 . C G 2907 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.8375;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.44;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2940,324,0 chrXI 591445 . C T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.88;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3727,390,0 chrXI 594186 . T G 2976 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.4855;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.89;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3009,324,0 chrXI 595976 . G A 3831.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=13.0120;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.09;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3831,402,0 chrXI 596667 . C T 2960 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6964;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.45;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2993,324,0 chrXI 596708 . T C 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.830;QD=22.11;ReadPosRankSum=1.616;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2708,294,0 chrXI 596823 . A G 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-1.046;QD=21.52;ReadPosRankSum=1.699;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2314,252,0 chrXI 596825 . T C 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.00;FS=4.943;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-0.286;QD=21.58;ReadPosRankSum=1.665;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2277,249,0 chrXI 596871 . A G 2262 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.14;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2295,252,0 chrXI 596996 . G A 1922 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=84.3024;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=19.61;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1955,201,0 chrXI 597002 . G A,T 227.06 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=50.41;MQ0=0;QD=2.27;SB=-8.011e+02 GT:AD:DP:GQ:PL 1/2:0,91,9:100:46:287,214,205,73,0,46 chrXI 597106 . T C 2957 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.43;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2990,324,0 chrXI 597150 . A G 3023 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.90;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3056,333,0 chrXI 597399 . A G 4455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=195;Dels=0.00;FS=3.033;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.350;QD=22.85;ReadPosRankSum=1.624;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4455,480,0 chrXI 597866 . A G 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=137;Dels=0.00;FS=3.586;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.277;QD=22.94;ReadPosRankSum=1.682;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3176,339,0 chrXI 598213 . C T 5473.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.71;SB=-2.928e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5473,571,0 chrXI 598496 . T C 3610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.3980;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.423;QD=20.63;ReadPosRankSum=1.712;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3610,390,0 chrXI 598562 . C T 4036.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.2411;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=18.26;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4036,424,0 chrXI 598795 . A T 4987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=208;Dels=0.00;FS=3.139;HaplotypeScore=11.9142;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.959;QD=23.98;ReadPosRankSum=1.648;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4987,520,0 chrXI 598922 . C G 3875.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.4224;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3875,435,0 chrXI 599004 . A G 5072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.499;QD=22.85;ReadPosRankSum=1.654;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:5072,549,0 chrXI 599337 . T C 5166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.205;QD=23.38;ReadPosRankSum=1.716;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:1,217:221:99:5166,553,0 chrXI 599535 . A G 3849.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.7036;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.47;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3849,432,0 chrXI 599592 . C T 4102.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.1717;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4102,438,0 chrXI 599900 . A G 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=111;Dels=0.00;FS=6.723;HaplotypeScore=9.3770;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.286;QD=23.79;ReadPosRankSum=2.293;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2674,291,0 chrXI 599979 . A G 2572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.0580;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.822;QD=21.80;ReadPosRankSum=1.585;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2605,288,0 chrXI 600024 . T C 2393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=117;Dels=0.00;FS=3.036;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=0.711;QD=20.45;ReadPosRankSum=2.407;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2426,264,0 chrXI 600033 . A G 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=133;Dels=0.00;FS=6.667;HaplotypeScore=10.0520;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.619;QD=19.26;ReadPosRankSum=2.376;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2594,291,0 chrXI 600075 . T C 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=137;Dels=0.00;FS=5.889;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=1.793;QD=20.53;ReadPosRankSum=2.860;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:3,133:137:99:2845,321,0 chrXI 600197 . C T 5183.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=18.4327;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=25.53;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5183,550,0 chrXI 600363 . G A 6120.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=8.9711;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.88;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:6120,634,0 chrXI 600406 . T G 5812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=16.8067;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.496;QD=22.18;ReadPosRankSum=1.779;SB=-2.861e+03 GT:AD:DP:GQ:PL 1/1:2,258:262:99:5812,626,0 chrXI 600449 . T C 6411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=301;Dels=0.00;FS=8.172;HaplotypeScore=29.5398;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.603;QD=21.30;ReadPosRankSum=2.392;SB=-2.943e+03 GT:AD:DP:GQ:PL 1/1:2,297:301:99:6411,714,0 chrXI 601089 . A G 5318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=13.5529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.669;QD=21.19;ReadPosRankSum=1.663;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5318,591,0 chrXI 601260 . G C 4594.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.1860;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4594,492,0 chrXI 602044 . C T 3807.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.25;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3807,397,0 chrXI 602166 . T G 3117 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3150,342,0 chrXI 604356 . A G 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=129;Dels=0.00;FS=6.401;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.420;QD=22.64;ReadPosRankSum=2.392;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2954,324,0 chrXI 606047 . C T 4552.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.83;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4552,492,0 chrXI 606185 . A G 4146.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.25;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4146,453,0 chrXI 606218 . C T 3882.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.7082;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.82;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3882,406,0 chrXI 606830 . G A 4054.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.6513;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.72;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4054,429,0 chrXI 608115 . T A 4220.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.961;DP=181;Dels=0.00;FS=6.093;HaplotypeScore=6.3340;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.482;QD=23.31;ReadPosRankSum=1.567;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4220,421,0 chrXI 608132 . T C 3856.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.91;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3856,420,0 chrXI 608429 . T C 2407 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.50;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2440,264,0 chrXI 608546 . G A 2197 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2230,234,0 chrXI 608636 . G A 1417 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=21.47;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1450,156,0 chrXI 608639 . A G 1401 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;MQRankSum=-0.279;QD=22.60;ReadPosRankSum=1.676;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1434,156,0 chrXI 608641 . G A 1404 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=22.29;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1437,150,0 chrXI 608829 . T C 1743 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.55;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1776,192,0 chrXI 608840 . G A 1835 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=23.53;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1868,198,0 chrXI 608893 . A T 2271 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=24.68;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2304,240,0 chrXI 609231 . C T 6430.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=17.4955;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:6430,676,0 chrXI 609381 . T G 5444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=264;Dels=0.00;FS=3.021;HaplotypeScore=13.4673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.532;QD=20.62;ReadPosRankSum=2.431;SB=-3.327e+03 GT:AD:DP:GQ:PL 1/1:2,260:264:99:5444,612,0 chrXI 609536 . A G 5814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=253;Dels=0.00;FS=5.504;HaplotypeScore=23.7846;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.295;QD=22.98;ReadPosRankSum=2.932;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:3,249:253:99:5814,630,0 chrXI 609738 . A G 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.9680;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.783;QD=23.15;ReadPosRankSum=1.708;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3403,372,0 chrXI 610116 . G A 4431.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.4594;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.44;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4431,475,0 chrXI 610214 . C T 3725.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.1500;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.17;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3725,393,0 chrXI 610232 . A T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=19.85;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3354,366,0 chrXI 610234 . T C 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=0.334;QD=19.60;ReadPosRankSum=1.712;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3352,360,0 chrXI 610394 . G A 4070.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.99;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4070,444,0 chrXI 610473 . C T 4799.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.5430;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=25.13;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4799,508,0 chrXI 610521 . C T 4339.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.38;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4339,451,0 chrXI 610769 . T C 4515.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.3532;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.54;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4515,483,0 chrXI 611187 . C G 3559.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.4485;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.24;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3559,384,0 chrXI 612138 . G A 5380.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5380,562,0 chrXI 612262 . C T 2758 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2791,294,0 chrXI 612307 . C T 2698 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2731,285,0 chrXI 612508 . A G 1722 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.96;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1755,189,0 chrXI 612630 . C T 2080 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2113,225,0 chrXI 612809 . A G 3666.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.20;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3666,417,0 chrXI 613110 . C T 3005 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=20.87;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3038,321,0 chrXI 613208 . G A 3099 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.67;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3132,327,0 chrXI 613247 . G A 2631 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=18.53;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2664,282,0 chrXI 613259 . G C 2085 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;QD=15.68;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2118,231,0 chrXI 613298 . T G 1026 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=0;QD=12.36;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1059,117,0 chrXI 613300 . G C 977 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.65;MQ0=0;QD=12.37;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1010,111,0 chrXI 613307 . T A 855 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=12.21;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:93:888,93,0 chrXI 613313 . A C 742 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=11.24;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:90:775,90,0 chrXI 613583 . G A 5532.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.8525;MLEAC=2;MLEAF=1.00;MQ=39.84;MQ0=0;QD=27.12;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:5532,568,0 chrXI 613619 . G A 3997.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.7287;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=25.79;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3997,432,0 chrXI 613784 . G A 281.64 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.989;DP=233;Dels=0.00;FS=4.688;HaplotypeScore=261.4650;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;MQRankSum=2.183;QD=1.21;ReadPosRankSum=-6.005;SB=-1.076e+02 GT:AD:DP:GQ:PL 1/1:153,35:233:11:314,11,0 chrXI 613790 . G A 407 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=8.462;DP=230;Dels=0.00;FS=6.424;HaplotypeScore=314.2666;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;MQRankSum=3.479;QD=1.77;ReadPosRankSum=-0.916;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:150,67:230:45:440,45,0 chrXI 613793 . G A 487 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=6.400;DP=228;Dels=0.00;FS=24.308;HaplotypeScore=305.2830;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;MQRankSum=1.258;QD=2.14;ReadPosRankSum=-3.019;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:132,96:228:54:520,54,0 chrXI 613805 . A G 389.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.094;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=130.1898;MLEAC=1;MLEAF=0.500;MQ=42.28;MQ0=0;MQRankSum=-3.430;QD=1.75;ReadPosRankSum=-3.460;SB=-9.901e+01 GT:AD:DP:GQ:PL 0/1:183,39:222:99:419,0,1426 chrXI 614258 . G A 3718.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=25.47;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3718,391,0 chrXI 614340 . T C 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=175;Dels=0.00;FS=6.839;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=1.115;QD=21.60;ReadPosRankSum=2.336;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:2,171:175:99:3780,414,0 chrXI 614464 . A C 3284.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=39.79;MQ0=0;QD=18.87;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3284,357,0 chrXI 614538 . T A 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=172;Dels=0.00;FS=2.799;HaplotypeScore=9.0435;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;MQRankSum=-1.756;QD=17.33;ReadPosRankSum=2.045;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3013,324,0 chrXI 614635 . A G 4800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.346;DP=201;Dels=0.00;FS=9.051;HaplotypeScore=12.2964;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.408;QD=23.88;ReadPosRankSum=3.416;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:4,195:201:99:4800,514,0 chrXI 614678 . G A 4069.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=22.99;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4069,444,0 chrXI 614697 . C A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=23.66;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3833,414,0 chrXI 614731 . C T 3082 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.0958;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=21.70;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:3115,339,0 chrXI 615175 . A G 3351.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3351,369,0 chrXI 615234 . A G 4297.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.86;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4297,480,0 chrXI 615846 . C G 2721 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.66;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2754,300,0 chrXI 615914 . G C 3556.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.80;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3556,381,0 chrXI 616020 . C T 4390.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4390,460,0 chrXI 616059 . A G 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=3.236;HaplotypeScore=10.6770;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.206;QD=23.40;ReadPosRankSum=1.710;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3744,405,0 chrXI 616188 . T C 4555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=203;Dels=0.00;FS=6.078;HaplotypeScore=11.5700;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=1.535;QD=22.44;ReadPosRankSum=2.955;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:3,199:203:99:4555,489,0 chrXI 616404 . T C 4100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=4.602;HaplotypeScore=7.8456;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.059;QD=23.30;ReadPosRankSum=1.693;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4100,447,0 chrXI 616604 . A G 2404 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.47;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2437,261,0 chrXI 616627 . A G 2422 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.43;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2455,264,0 chrXI 616764 . T C 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=130;Dels=0.00;FS=2.985;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.287;QD=22.70;ReadPosRankSum=2.412;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2984,324,0 chrXI 616917 . G A 3215 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3248,342,0 chrXI 617645 . C T 2171 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.12;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2204,231,0 chrXI 617954 . A G 2452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=110;Dels=0.04;FS=8.234;HaplotypeScore=34.8502;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;MQRankSum=-1.207;QD=22.29;ReadPosRankSum=2.215;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:2,103:106:99:2485,270,0 chrXI 619045 . G A 3792.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.62;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3792,408,0 chrXI 619260 . A T 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=136;Dels=0.00;FS=2.816;HaplotypeScore=9.0207;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=2.359;QD=20.78;ReadPosRankSum=1.703;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2859,300,0 chrXI 619475 . G A 3003 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.82;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3036,327,0 chrXI 619685 . A C 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=169;Dels=0.00;FS=3.168;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.103;QD=22.14;ReadPosRankSum=1.650;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3742,414,0 chrXI 619794 . G A 4372.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.8298;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.75;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4372,463,0 chrXI 619801 . G A 4215.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.84;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4215,436,0 chrXI 619908 . T C 4123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=173;Dels=0.00;FS=7.012;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.107;QD=23.83;ReadPosRankSum=2.421;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:4123,441,0 chrXI 620005 . C G 3755.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.49;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3755,414,0 chrXI 620803 . A G 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.165;QD=23.19;ReadPosRankSum=1.705;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2978,330,0 chrXI 620968 . C A 3138 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.33;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3171,336,0 chrXI 621097 . G A 3775.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.51;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3775,408,0 chrXI 621460 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.781;QD=23.01;ReadPosRankSum=1.708;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3313,369,0 chrXI 621589 . T A 3606.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.32;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3606,376,0 chrXI 622127 . C T 4005.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4005,415,0 chrXI 622408 . C G 3757.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.56;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3757,402,0 chrXI 622682 . G A 3279.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3279,351,0 chrXI 622789 . T C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.307;QD=22.92;ReadPosRankSum=1.676;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2875,324,0 chrXI 623815 . A G 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=150;Dels=0.00;FS=3.670;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.198;QD=23.71;ReadPosRankSum=1.662;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3557,390,0 chrXI 623854 . G A 4004.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.67;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4004,435,0 chrXI 624667 . A G 3350.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.5178;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.33;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3350,363,0 chrXI 624685 . G A 3150 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.45;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3183,330,0 chrXI 624919 . C T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=24.76;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3665,393,0 chrXI 625172 . A G 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=195;Dels=0.00;FS=7.618;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;MQRankSum=-1.842;QD=19.12;ReadPosRankSum=2.424;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:3729,420,0 chrXI 625174 . T A 3918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=191;Dels=0.00;FS=2.879;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=-1.131;QD=20.51;ReadPosRankSum=2.424;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3918,412,0 chrXI 625191 . C T 3735.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=18.68;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3735,408,0 chrXI 625303 . T C 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=185;Dels=0.00;FS=7.600;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.342;QD=19.34;ReadPosRankSum=2.183;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3578,402,0 chrXI 625624 . A G 3636.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.87;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3636,399,0 chrXI 625649 . G A 3627.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.6122;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.71;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3627,376,0 chrXI 625823 . G A 2604 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.8907;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=19.73;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2637,285,0 chrXI 625829 . A T 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-0.899;QD=20.24;ReadPosRankSum=1.706;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2745,297,0 chrXI 626552 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:3030,324,0 chrXI 628100 . T C 3782.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3782,411,0 chrXI 628143 . C A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3386,348,0 chrXI 628202 . G A 3397.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3397,354,0 chrXI 628616 . G A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=25.37;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3475,361,0 chrXI 628658 . C T 3965.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4186;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=24.94;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3965,415,0 chrXI 628847 . T C 3856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.796;DP=163;Dels=0.00;FS=19.233;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=1.666;QD=23.66;ReadPosRankSum=3.651;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:5,157:163:99:3856,414,0 chrXI 628874 . T C 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=3.529;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=1.181;QD=24.66;ReadPosRankSum=1.709;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3748,402,0 chrXI 628892 . G T 3616.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=23.48;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3616,376,0 chrXI 628967 . G A 2981 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.42;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3014,324,0 chrXI 629063 . T C 3196 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=22.67;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3229,357,0 chrXI 629099 . G A 2742 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=18.91;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2775,297,0 chrXI 629124 . G A 2260 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=17.94;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2293,243,0 chrXI 629129 . C A 2209 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=17.67;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2242,234,0 chrXI 629138 . A G 1928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;MQRankSum=-0.206;QD=16.20;ReadPosRankSum=1.703;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:1961,213,0 chrXI 629159 . A G 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=131;Dels=0.00;FS=6.969;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;MQRankSum=-0.854;QD=17.86;ReadPosRankSum=2.393;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2373,261,0 chrXI 629639 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.44;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,144:149:99:3344,366,0 chrXI 629864 . T C 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=160;Dels=0.00;FS=3.004;HaplotypeScore=14.5596;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.381;QD=22.19;ReadPosRankSum=2.387;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3551,399,0 chrXI 630615 . T C 1940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.692;QD=22.56;ReadPosRankSum=1.692;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1973,219,0 chrXI 630897 . G A 3456.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.34;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3456,360,0 chrXI 631805 . T A 4263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.693;DP=196;Dels=0.00;FS=5.934;HaplotypeScore=11.0192;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.703;QD=21.75;ReadPosRankSum=2.912;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:4263,468,0 chrXI 631922 . C T 4030.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.71;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4030,435,0 chrXI 632039 . C T 4135.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.47;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4135,441,0 chrXI 632117 . T C 5203.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.6136;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5203,582,0 chrXI 632255 . G A 6667.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=18.2979;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=25.25;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:6667,715,0 chrXI 632510 . T A 7199.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=14.0823;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.29;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:0,323:323:99:7199,766,0 chrXI 632525 . C T 7223.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.38;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,307:309:99:7223,748,0 chrXI 632627 . C T 4506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=204;Dels=0.00;FS=3.947;HaplotypeScore=8.2686;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.250;QD=22.09;ReadPosRankSum=-1.163;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4506,464,0 chrXI 632654 . T C 4094.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.5441;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.87;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4094,438,0 chrXI 632920 . C T 1946 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.17;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1979,204,0 chrXI 632929 . A G 1933 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.72;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1966,219,0 chrXI 633512 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.04;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2787,294,0 chrXI 633545 . G A 2308 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.41;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2341,252,0 chrXI 633641 . T A 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.258;QD=24.89;ReadPosRankSum=1.708;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3709,393,0 chrXI 633794 . A G 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=137;Dels=0.00;FS=3.010;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.465;QD=23.92;ReadPosRankSum=1.706;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3277,351,0 chrXI 633925 . A T 4066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=178;Dels=0.00;FS=3.026;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=0.531;QD=22.84;ReadPosRankSum=2.394;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4066,418,0 chrXI 633938 . A G 3637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.465;QD=22.04;ReadPosRankSum=1.690;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3637,393,0 chrXI 634418 . G A 3638.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.74;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3638,382,0 chrXI 634424 . A G 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=3.092;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.097;QD=21.87;ReadPosRankSum=1.689;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3521,378,0 chrXI 635155 . G T 3439.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.56;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3439,366,0 chrXI 635970 . T C 4133.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.2150;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4133,453,0 chrXI 636158 . G A 5312.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.9382;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-2.826e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5312,547,0 chrXI 636625 . C G 5410.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.3353;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.70;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5410,580,0 chrXI 636843 . T C 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=191;Dels=0.00;FS=9.142;HaplotypeScore=8.0127;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.161;QD=19.90;ReadPosRankSum=2.398;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3800,420,0 chrXI 637026 . T C 3960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=170;Dels=0.00;FS=3.010;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.371;QD=23.29;ReadPosRankSum=2.421;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3960,435,0 chrXI 637365 . T A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.75;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3528,375,0 chrXI 637897 . T A 5152.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=6.9686;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.63;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5152,547,0 chrXI 637913 . C T 5393.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.65;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5393,553,0 chrXI 639908 . T C 2697 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.86;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2730,303,0 chrXI 640055 . A G 2901 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.0885;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.15;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2934,321,0 chrXI 640763 . T C 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=4.964;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.176;QD=23.33;ReadPosRankSum=1.707;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3252,357,0 chrXI 641421 . T C 2873 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2906,321,0 chrXI 641652 . G C 1884 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1917,204,0 chrXI 641793 . C A 1922 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.64;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1955,204,0 chrXI 641940 . G A 1910 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1943,204,0 chrXI 642498 . C T 3162 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.8108;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=22.91;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3195,339,0 chrXI 642512 . G C 2903 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.8431;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.74;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2936,315,0 chrXI 642656 . C T 3115 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=26.62;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3148,324,0 chrXI 642703 . T A 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=107;Dels=0.00;FS=7.580;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-1.392;QD=22.17;ReadPosRankSum=2.151;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2405,252,0 chrXI 642707 . C T 2353 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=21.79;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2386,249,0 chrXI 642801 . G C 2558 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=22.64;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2591,282,0 chrXI 642807 . T A 2417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=-0.618;QD=21.02;ReadPosRankSum=1.672;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2450,261,0 chrXI 643139 . T A 2556 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.62;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2589,273,0 chrXI 643217 . A T 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.9067;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.716;QD=24.33;ReadPosRankSum=1.686;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3698,396,0 chrXI 643255 . A G 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=139;Dels=0.00;FS=3.140;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.790;QD=22.17;ReadPosRankSum=1.656;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:1,135:139:99:3115,342,0 chrXI 643371 . C T 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.400;QD=22.05;ReadPosRankSum=0.187;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2943,318,0 chrXI 643390 . G A 3478.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=24.49;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3478,363,0 chrXI 643448 . T A 3299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=141;Dels=0.00;FS=3.105;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.308;QD=23.40;ReadPosRankSum=1.583;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3299,348,0 chrXI 643474 . G C 3353.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.65;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3353,357,0 chrXI 643509 . G A 3183 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.48;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3216,333,0 chrXI 643590 . T A 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=125;Dels=0.00;FS=3.300;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=1.201;QD=21.18;ReadPosRankSum=1.564;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2681,288,0 chrXI 643696 . T C 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;MQRankSum=0.155;QD=24.52;ReadPosRankSum=1.706;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3310,360,0 chrXI 643729 . A G 3004 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=23.29;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3037,336,0 chrXI 643816 . T A 2509 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=20.74;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2542,264,0 chrXI 643990 . T G 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=3.188;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.594;QD=22.90;ReadPosRankSum=1.697;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2323,249,0 chrXI 644027 . G A 2732 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.35;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2765,294,0 chrXI 644080 . A G 3534.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=25.99;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3534,381,0 chrXI 644390 . T C 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.584;QD=21.82;ReadPosRankSum=1.711;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3556,393,0 chrXI 644409 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.3249;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.59;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3498,375,0 chrXI 644500 . A G 4599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=197;Dels=0.00;FS=7.152;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.012;QD=23.35;ReadPosRankSum=2.424;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:2,192:197:99:4599,504,0 chrXI 644553 . T A 3914.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.6196;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.62;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3914,403,0 chrXI 644655 . C T 3887.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.6841;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.24;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3887,420,0 chrXI 645008 . A G 2268 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=11.9875;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.24;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2301,252,0 chrXI 645141 . A T 3215 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=12.1896;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.73;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3248,336,0 chrXI 645733 . T C 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.119;DP=135;Dels=0.00;FS=3.034;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=0.872;QD=22.59;ReadPosRankSum=2.358;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:3082,333,0 chrXI 645980 . G A 3144 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.14;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3177,336,0 chrXI 646140 . G C 3001 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.56;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3034,333,0 chrXI 647339 . T C 7018.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.864;DP=453;Dels=0.00;FS=3.234;HaplotypeScore=43.5308;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=1;MQRankSum=2.219;QD=15.49;ReadPosRankSum=7.277;SB=-3.622e+03 GT:AD:DP:GQ:PL 1/1:21,429:453:99:7018,786,0 chrXI 647375 . G A 4549.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.255;DP=633;Dels=0.00;FS=135.784;HaplotypeScore=235.7487;MLEAC=1;MLEAF=0.500;MQ=37.83;MQ0=3;MQRankSum=6.184;QD=7.19;ReadPosRankSum=5.394;SB=-2.532e+03 GT:AD:DP:GQ:PL 0/1:310,323:633:99:4549,0,1103 chrXI 647398 . G T 3662.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.508;DP=749;Dels=0.00;FS=171.615;HaplotypeScore=89.4867;MLEAC=1;MLEAF=0.500;MQ=37.61;MQ0=13;MQRankSum=5.731;QD=4.89;ReadPosRankSum=-1.559;SB=-1.659e+03 GT:AD:DP:GQ:PL 0/1:421,328:749:99:3662,0,3414 chrXI 647402 . C A 10951.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.075;DP=748;Dels=0.00;FS=133.499;HaplotypeScore=77.8565;MLEAC=2;MLEAF=1.00;MQ=37.78;MQ0=14;MQRankSum=6.772;QD=14.64;ReadPosRankSum=-5.851;SB=-6.563e+03 GT:AD:DP:GQ:PL 1/1:49,695:748:99:10951,1051,0 chrXI 647431 . C G 3317.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;DP=956;Dels=0.00;FS=269.694;HaplotypeScore=330.9456;MLEAC=1;MLEAF=0.500;MQ=36.40;MQ0=33;MQRankSum=9.289;QD=3.47;ReadPosRankSum=0.814;SB=-7.050e+02 GT:AD:DP:GQ:PL 0/1:623,330:956:99:3317,0,7318 chrXI 647453 . G A 3624.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=16.955;DP=986;DS;Dels=0.00;FS=105.913;HaplotypeScore=151.4911;MLEAC=1;MLEAF=0.500;MQ=35.47;MQ0=40;MQRankSum=6.934;QD=3.68;ReadPosRankSum=0.207;SB=-9.440e+02 GT:AD:DP:GQ:PL 0/1:490,364:986:99:3624,0,6917 chrXI 647534 . A T 2526.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.881;DP=523;DS;Dels=0.00;FS=54.643;HaplotypeScore=106.0325;MLEAC=1;MLEAF=0.500;MQ=29.27;MQ0=94;MQRankSum=-0.533;QD=4.83;ReadPosRankSum=4.045;SB=-5.710e+02 GT:AD:DP:GQ:PL 0/1:176,346:522:99:2556,0,879 chrXI 647569 . C T 630.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.611;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=129.3669;MLEAC=1;MLEAF=0.500;MQ=20.83;MQ0=78;MQRankSum=5.158;QD=2.01;ReadPosRankSum=-3.293;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:210,101:314:99:660,0,887 chrXI 647573 . A G 160.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.104;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=119.7056;MLEAC=1;MLEAF=0.500;MQ=21.37;MQ0=74;MQRankSum=-8.423;QD=0.50;ReadPosRankSum=-1.788;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:237,84:321:99:190,0,1515 chrXI 647576 . T C 137.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.980;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=114.9731;MLEAC=1;MLEAF=0.500;MQ=21.60;MQ0=68;MQRankSum=-8.281;QD=0.43;ReadPosRankSum=-2.258;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:223,91:317:99:167,0,1618 chrXI 647591 . C A 520.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.371;DP=282;Dels=0.00;FS=1.846;HaplotypeScore=3.2158;MLEAC=1;MLEAF=0.500;MQ=23.15;MQ0=50;MQRankSum=-3.689;QD=1.84;ReadPosRankSum=-2.512;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:121,161:282:99:550,0,1430 chrXI 647609 . T C 2184 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=232;Dels=0.00;FS=35.768;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=29;MQRankSum=2.688;QD=9.41;ReadPosRankSum=2.965;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:3,229:232:99:2217,243,0 chrXI 647617 . C T 1446.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.743;DP=208;Dels=0.00;FS=27.599;HaplotypeScore=3.1552;MLEAC=1;MLEAF=0.500;MQ=22.45;MQ0=25;MQRankSum=9.022;QD=6.95;ReadPosRankSum=6.322;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:117,91:208:99:1476,0,305 chrXI 647620 . G C 2056 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.144;DP=189;Dels=0.00;FS=27.181;HaplotypeScore=3.1552;MLEAC=2;MLEAF=1.00;MQ=22.76;MQ0=25;MQRankSum=3.235;QD=10.88;ReadPosRankSum=1.594;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:14,175:189:99:2089,231,0 chrXI 647621 . G A 1367.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.721;DP=192;Dels=0.00;FS=29.249;HaplotypeScore=4.0493;MLEAC=1;MLEAF=0.500;MQ=22.63;MQ0=25;MQRankSum=7.767;QD=7.12;ReadPosRankSum=4.598;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,85:192:99:1397,0,249 chrXI 647623 . C T 227.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.611;DP=190;Dels=0.00;FS=16.714;HaplotypeScore=5.8375;MLEAC=1;MLEAF=0.500;MQ=22.48;MQ0=23;MQRankSum=-2.982;QD=1.19;ReadPosRankSum=-1.204;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/1:118,72:190:99:257,0,1255 chrXI 647627 . C A 1349.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.527;DP=206;Dels=0.00;FS=36.828;HaplotypeScore=5.4599;MLEAC=1;MLEAF=0.500;MQ=21.49;MQ0=34;MQRankSum=8.050;QD=6.55;ReadPosRankSum=3.939;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:126,80:206:99:1379,0,144 chrXI 647642 . A T 66.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.827;DP=190;Dels=0.00;FS=18.038;HaplotypeScore=19.3979;MLEAC=1;MLEAF=0.500;MQ=19.84;MQ0=44;MQRankSum=-5.465;QD=0.35;ReadPosRankSum=4.416;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:79,75:190:96:96,0,1002 chrXI 647654 . G A 1028 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;DP=175;Dels=0.01;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=18.06;MQ0=48;MQRankSum=-1.732;QD=5.87;ReadPosRankSum=1.187;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:1,173:174:99:1061,114,0 chrXI 647657 . C T 1004 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.941;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.2714;MLEAC=2;MLEAF=1.00;MQ=17.76;MQ0=52;MQRankSum=-1.732;QD=5.61;ReadPosRankSum=1.323;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:2,177:179:99:1037,117,0 chrXI 647666 . C T 206.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;DP=177;Dels=0.00;FS=6.816;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.86;MQ0=64;MQRankSum=6.199;QD=1.16;ReadPosRankSum=-5.270;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:158,19:177:99:236,0,417 chrXI 647723 . A T 372.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.770;DP=232;Dels=0.00;FS=1.133;HaplotypeScore=19.5840;MLEAC=1;MLEAF=0.500;MQ=15.75;MQ0=111;MQRankSum=1.765;QD=1.60;ReadPosRankSum=0.055;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:155,77:232:99:402,0,526 chrXI 647735 . C A 610.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;DP=281;Dels=0.00;FS=14.046;HaplotypeScore=18.1808;MLEAC=1;MLEAF=0.500;MQ=22.15;MQ0=99;MQRankSum=5.480;QD=2.17;ReadPosRankSum=-7.577;SB=-1.830e+02 GT:AD:DP:GQ:PL 0/1:199,80:281:99:640,0,850 chrXI 647758 . C T 198.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.262;DP=299;Dels=0.00;FS=0.673;HaplotypeScore=89.8340;MLEAC=1;MLEAF=0.500;MQ=25.15;MQ0=77;MQRankSum=-2.989;QD=0.66;ReadPosRankSum=-0.596;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:190,103:299:99:228,0,1982 chrXI 647780 . C A 1951.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.182;DP=246;Dels=0.00;FS=11.028;HaplotypeScore=5.8534;MLEAC=1;MLEAF=0.500;MQ=26.36;MQ0=54;MQRankSum=2.821;QD=7.93;ReadPosRankSum=0.858;SB=-9.170e+02 GT:AD:DP:GQ:PL 0/1:57,189:246:47:1981,0,47 chrXI 647798 . T C 2549 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.416;DP=253;Dels=0.00;FS=8.948;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=55;MQRankSum=-2.966;QD=10.08;ReadPosRankSum=3.416;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:4,249:253:99:2582,288,0 chrXI 647806 . C T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.620;DP=284;Dels=0.00;FS=17.423;HaplotypeScore=12.2488;MLEAC=1;MLEAF=0.500;MQ=26.65;MQ0=59;MQRankSum=-2.285;QD=0.05;ReadPosRankSum=0.144;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:266,18:284:43:43,0,2026 chrXI 647812 . C T 1778.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.903;DP=278;Dels=0.00;FS=13.720;HaplotypeScore=8.3054;MLEAC=1;MLEAF=0.500;MQ=26.25;MQ0=66;MQRankSum=3.171;QD=6.40;ReadPosRankSum=2.666;SB=-1.567e+03 GT:AD:DP:GQ:PL 0/1:30,248:278:31:1808,0,31 chrXI 647831 . A T 773.79 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.266;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=20.70;MQ0=89;MQRankSum=0.250;QD=3.16;ReadPosRankSum=3.184;SB=-6.298e+02 GT:AD:DP:GQ:PL 1/1:11,223:245:10:806,10,0 chrXI 647843 . G A 404 filter AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.36;MQ0=97;QD=1.70;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,235:238:48:437,48,0 chrXI 647846 . C T 361 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=242;Dels=0.00;FS=6.208;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.08;MQ0=100;MQRankSum=-0.951;QD=1.49;ReadPosRankSum=1.708;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:1,241:242:45:394,45,0 chrXI 647912 . T A 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.079;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=13.6825;MLEAC=1;MLEAF=0.500;MQ=25.35;MQ0=22;MQRankSum=-4.053;QD=0.17;ReadPosRankSum=-2.749;SB=-3.100e+02 GT:AD:DP:GQ:PL 0/1:216,105:321:84:84,0,2836 chrXI 647939 . A G 142.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.937;DP=259;Dels=0.00;FS=66.437;HaplotypeScore=33.9085;MLEAC=1;MLEAF=0.500;MQ=27.64;MQ0=6;MQRankSum=-2.284;QD=0.55;ReadPosRankSum=-8.640;SB=-2.220e+02 GT:AD:DP:GQ:PL 0/1:179,80:259:99:172,0,2992 chrXI 647951 . A G 2085.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.616;DP=206;Dels=0.00;FS=159.096;HaplotypeScore=44.1004;MLEAC=1;MLEAF=0.500;MQ=28.95;MQ0=3;MQRankSum=1.388;QD=10.12;ReadPosRankSum=4.510;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:74,132:206:99:2115,0,105 chrXI 647954 . C T 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.498;DP=194;Dels=0.00;FS=69.638;HaplotypeScore=68.2540;MLEAC=1;MLEAF=0.500;MQ=29.28;MQ0=3;MQRankSum=-1.099;QD=0.06;ReadPosRankSum=-0.912;SB=-2.820e+02 GT:AD:DP:GQ:PL 0/1:141,51:194:41:41,0,2019 chrXI 647969 . C A 1895 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.297;DP=150;Dels=0.00;FS=185.650;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=30.28;MQ0=6;MQRankSum=1.186;QD=12.63;ReadPosRankSum=-3.407;SB=-1.901e+01 GT:AD:DP:GQ:PL 1/1:23,127:150:99:1928,160,0 chrXI 647995 . C T 57.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.302;DP=145;Dels=0.00;FS=19.460;HaplotypeScore=66.3503;MLEAC=1;MLEAF=0.500;MQ=26.44;MQ0=21;MQRankSum=-0.005;QD=0.39;ReadPosRankSum=0.005;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:71,71:145:87:87,0,710 chrXI 647998 . G C 302.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;DP=125;Dels=0.00;FS=2.253;HaplotypeScore=49.9859;MLEAC=1;MLEAF=0.500;MQ=25.13;MQ0=21;MQRankSum=-4.406;QD=2.42;ReadPosRankSum=-4.754;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:23,100:125:99:332,0,201 chrXI 647999 . G A 63.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.212;DP=122;Dels=0.00;FS=21.887;HaplotypeScore=44.7223;MLEAC=1;MLEAF=0.500;MQ=24.47;MQ0=22;MQRankSum=-0.891;QD=0.52;ReadPosRankSum=-0.491;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:57,64:122:93:93,0,429 chrXI 648020 . A G 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.166;DP=209;Dels=0.00;FS=4.133;HaplotypeScore=13.7511;MLEAC=1;MLEAF=0.500;MQ=20.23;MQ0=27;MQRankSum=-4.344;QD=0.38;ReadPosRankSum=-3.591;SB=-3.398e+01 GT:AD:DP:GQ:PL 0/1:24,150:209:99:109,0,206 chrXI 648032 . G A 417 filter AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.21;MQ0=27;QD=1.65;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:0,248:253:48:450,48,0 chrXI 648035 . C T 450 filter AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=19.16;MQ0=29;QD=1.60;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,282:282:48:483,48,0 chrXI 648101 . A T 3127.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.208;DP=555;Dels=0.00;FS=14.379;HaplotypeScore=14.6195;MLEAC=1;MLEAF=0.500;MQ=29.68;MQ0=40;MQRankSum=4.890;QD=5.63;ReadPosRankSum=-5.765;SB=-1.044e+03 GT:AD:DP:GQ:PL 0/1:272,283:555:99:3157,0,2074 chrXI 648128 . A G 6169.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.285;DP=606;Dels=0.00;FS=377.528;HaplotypeScore=21.6517;MLEAC=1;MLEAF=0.500;MQ=34.04;MQ0=33;MQRankSum=4.581;QD=10.18;ReadPosRankSum=-2.804;SB=-1.963e+03 GT:AD:DP:GQ:PL 0/1:122,483:606:99:6169,0,248 chrXI 648136 . C T 204.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.279;DP=603;Dels=0.00;FS=210.487;HaplotypeScore=104.7490;MLEAC=1;MLEAF=0.500;MQ=35.18;MQ0=29;MQRankSum=-4.549;QD=0.34;ReadPosRankSum=2.466;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:489,113:603:99:234,0,6506 chrXI 648143 . C T 937.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.152;DP=591;Dels=0.00;FS=4.961;HaplotypeScore=152.4303;MLEAC=1;MLEAF=0.500;MQ=36.32;MQ0=21;MQRankSum=-6.132;QD=1.59;ReadPosRankSum=-7.409;SB=-1.300e+03 GT:AD:DP:GQ:PL 0/1:406,184:591:99:967,0,4637 chrXI 648152 . A T 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.774;DP=557;Dels=0.00;FS=142.657;HaplotypeScore=74.7069;MLEAC=1;MLEAF=0.500;MQ=37.68;MQ0=19;MQRankSum=-5.845;QD=0.15;ReadPosRankSum=-5.809;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:427,85:557:99:116,0,5762 chrXI 648158 . A C 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;DP=509;Dels=0.00;FS=129.049;HaplotypeScore=23.8680;MLEAC=1;MLEAF=0.500;MQ=38.56;MQ0=15;MQRankSum=-5.589;QD=0.07;ReadPosRankSum=-8.326;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:433,75:509:66:66,0,5868 chrXI 648384 . C T 6969.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.54;SB=-3.706e+03 GT:AD:DP:GQ:PL 1/1:0,294:296:99:6969,750,0 chrXI 648448 . C G 6237.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=13.4281;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.29;SB=-3.004e+03 GT:AD:DP:GQ:PL 1/1:0,288:293:99:6237,696,0 chrXI 648627 . T G 6047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=266;Dels=0.00;FS=6.719;HaplotypeScore=17.4970;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.180;QD=22.73;ReadPosRankSum=2.366;SB=-3.333e+03 GT:AD:DP:GQ:PL 1/1:2,264:266:99:6047,652,0 chrXI 648695 . T C 4178.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=14.6425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4178,456,0 chrXI 649062 . A G 5044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.1764;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.466;QD=22.82;ReadPosRankSum=1.716;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:5044,561,0 chrXI 649600 . C A 4364.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4364,468,0 chrXI 649635 . T C 4566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.342;DP=195;Dels=0.00;FS=8.861;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=2.166;QD=23.42;ReadPosRankSum=3.360;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:4,189:195:99:4566,487,0 chrXI 649880 . T C 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=5.558;HaplotypeScore=18.3264;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.584;QD=20.90;ReadPosRankSum=1.712;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3553,381,0 chrXI 650083 . A T 2499 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=25.76;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2532,267,0 chrXI 650108 . C T 1915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.066;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.022;QD=24.24;ReadPosRankSum=0.066;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1948,204,0 chrXI 650140 . A G 1745 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.66;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1778,189,0 chrXI 650463 . G T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=25.01;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3727,396,0 chrXI 650642 . A T 4222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-1.422;QD=23.59;ReadPosRankSum=1.674;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4222,445,0 chrXI 651018 . T C 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=3.037;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.366;QD=23.36;ReadPosRankSum=1.689;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3761,420,0 chrXI 651351 . A T 1512 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=127;Dels=0.00;FS=3.038;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=36.91;MQ0=0;MQRankSum=-1.791;QD=11.91;ReadPosRankSum=2.411;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:1545,197,0 chrXI 651352 . T A 1524 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.67;MQ0=0;QD=12.10;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1557,197,0 chrXI 651353 . C A 1677 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.42;MQ0=0;QD=13.42;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1710,215,0 chrXI 651354 . G A 1870 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.91;MQ0=0;QD=14.72;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:1903,228,0 chrXI 651373 . T C 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=43.33;MQ0=0;MQRankSum=-1.039;QD=16.89;ReadPosRankSum=1.711;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2820,306,0 chrXI 651740 . C T 2561 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9233;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.66;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2594,276,0 chrXI 651757 . C T 2363 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=20.73;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2396,255,0 chrXI 652034 . C T 2827 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.44;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2860,306,0 chrXI 652240 . T C 2355 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2388,258,0 chrXI 652398 . C T 1591 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.10;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1624,171,0 chrXI 652478 . C A 2047 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.61;MQ0=0;QD=23.00;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2080,216,0 chrXI 652579 . G A 1934 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.48;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1967,201,0 chrXI 652677 . G A 1884 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.79;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1917,198,0 chrXI 652733 . C A 1874 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.85;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1907,201,0 chrXI 652801 . C T 2786 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=24.65;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2819,294,0 chrXI 652829 . C T 2568 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.5589;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.35;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2601,282,0 chrXI 652867 . T C 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=3.054;HaplotypeScore=8.6485;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.682;QD=22.06;ReadPosRankSum=1.697;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2217,243,0 chrXI 652995 . C T 3294.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=25.73;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3294,340,0 chrXI 653013 . G A 2660 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=23.13;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2693,288,0 chrXI 653105 . A T 2641 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.39;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2674,276,0 chrXI 653227 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=21.52;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2207,231,0 chrXI 653233 . G A 2226 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.04;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2259,234,0 chrXI 653447 . G A 2745 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8932;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.26;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2778,288,0 chrXI 653621 . C T 2863 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2896,300,0 chrXI 653794 . A G 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=109;Dels=0.00;FS=6.817;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=0.282;QD=23.57;ReadPosRankSum=2.359;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2602,282,0 chrXI 654112 . A C 3230.05 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.24;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3264,357,0 chrXI 654405 . A G 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=142;Dels=0.00;FS=3.680;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-1.608;QD=23.92;ReadPosRankSum=1.707;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3397,378,0 chrXI 654576 . T C 3025 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.2517;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.58;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3058,333,0 chrXI 654601 . C T 2838 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.85;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2871,312,0 chrXI 654661 . G A 2474 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=18.46;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2507,270,0 chrXI 654789 . G A 3501.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.9077;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=25.74;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3501,361,0 chrXI 654804 . T G 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-0.688;QD=20.69;ReadPosRankSum=1.681;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2868,321,0 chrXI 654942 . G A 3170 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.66;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3203,333,0 chrXI 654985 . T C 3205.99 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.74;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3239,354,0 chrXI 655710 . G A 3181 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.0737;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.72;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3214,348,0 chrXI 655796 . G A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.6509;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.88;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3257,342,0 chrXI 655833 . C T 3811.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.43;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3811,405,0 chrXI 655866 . T A 3978.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.96;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3978,423,0 chrXI 656040 . C A 3351.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.27;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3351,360,0 chrXI 656134 . C T 3514.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=16.6492;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.56;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3514,381,0 chrXI 656226 . C T 3777.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.61;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3777,402,0 chrXI 656583 . G A 4637.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.30;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4637,475,0 chrXI 656640 . C G 4310.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4310,468,0 chrXI 656736 . G T 3987.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3987,415,0 chrXI 656956 . C T 3432.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3432,360,0 chrXI 657110 . C T 3617.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.28;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3617,375,0 chrXI 657302 . G C 2353 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=2.4780;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=19.45;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2386,261,0 chrXI 657303 . C T 2376 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=3.229;HaplotypeScore=2.4780;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.710;QD=19.48;ReadPosRankSum=1.477;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2409,261,0 chrXI 657311 . T C 2366 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=0.014;QD=19.55;ReadPosRankSum=1.703;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2399,261,0 chrXI 657441 . C T 3099 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.13;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3132,336,0 chrXI 657504 . T C 2963 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.95;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2996,339,0 chrXI 657801 . G A 2471 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;QD=22.67;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2504,273,0 chrXI 657811 . A G 1997 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;QD=21.47;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2030,225,0 chrXI 657812 . T C 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=4.416;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;MQRankSum=-0.369;QD=21.65;ReadPosRankSum=1.695;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2068,228,0 chrXI 657838 . A C 1893 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=20.14;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1926,216,0 chrXI 657941 . T C 1553 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=21.27;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1586,180,0 chrXI 657972 . A G 1218 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=39.74;MQ0=0;QD=18.74;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1251,141,0 chrXI 657995 . A T 1013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.44;MQ0=0;MQRankSum=-1.673;QD=17.47;ReadPosRankSum=1.613;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1046,117,0 chrXI 658002 . C A 956 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=15.17;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:989,111,0 chrXI 658017 . T C 812 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=3.395;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.32;MQ0=0;MQRankSum=-0.793;QD=13.76;ReadPosRankSum=1.674;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:96:845,96,0 chrXI 658021 . C G 759 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;QD=13.55;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:90:792,90,0 chrXI 658026 . A T 675 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.70;MQ0=0;QD=12.50;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:78:708,78,0 chrXI 658036 . A T 630 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.39;MQ0=0;QD=12.35;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:75:663,75,0 chrXI 658079 . G A 878 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=13.30;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:911,99,0 chrXI 658175 . C T 1640 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=21.03;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1673,180,0 chrXI 658182 . C G 1786 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=21.52;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1819,201,0 chrXI 658219 . A G 1763 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=22.04;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1796,195,0 chrXI 658347 . G A 2728 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=25.50;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2761,294,0 chrXI 658396 . C T 2555 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=22.81;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2588,270,0 chrXI 658419 . C T 2374 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=20.12;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2407,252,0 chrXI 658489 . G A 1534 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;QD=13.00;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,115:118:99:1567,168,0 chrXI 658515 . C G 1342 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;QD=11.77;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:1375,153,0 chrXI 658746 . A C 557 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=0;QD=15.91;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:63:590,63,0 chrXI 659172 . A C 81.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=7.74;MQ0=94;MQRankSum=0.945;QD=0.71;ReadPosRankSum=-0.643;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,67:114:32:111,0,32 chrXI 659243 . C A 482.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.181;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=1;MLEAF=0.500;MQ=15.07;MQ0=65;MQRankSum=-0.836;QD=2.79;ReadPosRankSum=0.707;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,93:173:99:512,0,492 chrXI 659583 . C A 316.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;DP=98;Dels=0.00;FS=2.924;HaplotypeScore=5.7202;MLEAC=1;MLEAF=0.500;MQ=18.55;MQ0=49;MQRankSum=1.413;QD=3.22;ReadPosRankSum=0.270;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:56,41:98:99:346,0,455 chrXI 659597 . T C 519 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=14.65;MQ0=67;MQRankSum=0.667;QD=5.52;ReadPosRankSum=1.600;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,92:94:60:552,60,0 chrXI 659634 . A G 1636 filter AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=17.18;MQ0=55;QD=10.22;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,158:160:99:1669,189,0 chrXI 659823 . G T 6812.01 filter AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=13;QD=23.49;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,289:290:99:6812,745,0 chrXI 659991 . T C 1034 filter AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=13.66;MQ0=110;QD=5.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:1067,123,0 chrXI 660039 . G A 961 filter AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=16.53;MQ0=96;QD=5.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:994,108,0 chrXI 660077 . A C 868 filter AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=14.83;MQ0=121;QD=4.38;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,196:198:99:901,99,0 chrXI 660208 . G C 91.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.38;MQ0=40;MQRankSum=0.050;QD=1.21;ReadPosRankSum=-0.710;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,35:75:99:121,0,148 chrXI 660406 . G A 734 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=22.13;MQ0=3;QD=15.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:84:767,84,0 chrXI 660530 . G A 154.06 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.58;MQ0=16;QD=3.85;SB=-7.279e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:21:187,21,0 chrXI 660637 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=5;QD=1.78;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:49,6,0 chrXI 660787 . C T 486 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.50;MQ0=8;QD=15.68;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:54:519,54,0 chrXI 660798 . C T 475 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=15;QD=12.18;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:54:508,54,0 chrXI 660833 . A G 1596 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=95;Dels=0.00;FS=4.320;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=29.50;MQ0=22;MQRankSum=0.498;QD=16.80;ReadPosRankSum=1.685;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1629,174,0 chrXI 660936 . T G 226 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.041;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=8;MQRankSum=-2.256;QD=11.30;ReadPosRankSum=2.041;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,18:20:30:259,30,0 chrXI 660999 . A G 630 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=25.16;MQ0=11;MQRankSum=0.866;QD=13.40;ReadPosRankSum=-0.674;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:75:663,75,0 chrXI 661005 . T C 564 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=24.88;MQ0=11;QD=12.82;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:66:597,66,0 chrXI 661030 . G A 731 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.61;MQ0=8;QD=14.06;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:84:764,84,0 chrXI 661088 . G A 500 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.30;MQ0=16;QD=10.42;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:57:533,57,0 chrXI 661093 . G C 441 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.38;MQ0=16;QD=9.80;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,43:45:51:474,51,0 chrXI 661167 . C T 1518 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.39;MQ0=14;QD=19.46;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1551,162,0 chrXI 661199 . A G 1440 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=80;Dels=0.00;FS=9.672;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.48;MQ0=10;MQRankSum=0.125;QD=18.00;ReadPosRankSum=2.379;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1473,162,0 chrXI 661229 . A G 320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=26;Dels=0.00;FS=6.812;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.12;MQ0=2;MQRankSum=-1.156;QD=12.31;ReadPosRankSum=1.589;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:1,25:26:39:353,39,0 chrXI 661398 . C A 266 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=12.8776;MLEAC=2;MLEAF=1.00;MQ=26.93;MQ0=12;QD=5.66;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:1,46:47:33:299,33,0 chrXI 661424 . A G 682 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=13.5220;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=7;QD=8.52;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,76:80:84:715,84,0 chrXI 661741 . C T 2661 filter AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.2991;MLEAC=2;MLEAF=1.00;MQ=26.33;MQ0=40;QD=16.13;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:2694,291,0 chrXI 661789 . T C 488 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.220;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=17.98;MQ0=55;MQRankSum=0.963;QD=5.81;ReadPosRankSum=1.605;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:60:521,60,0 chrXI 661816 . A G 374 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.78;MQ0=53;QD=5.42;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:45:407,45,0 chrXI 661888 . C A 164.06 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.86;MQ0=49;QD=2.88;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,57:57:21:197,21,0 chrXI 661960 . C T 321 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.43;MQ0=11;QD=11.46;SB=-8.632e-03 GT:AD:DP:GQ:PL 1/1:0,27:28:36:354,36,0 chrXI 661963 . A T 327 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.09;MQ0=10;QD=11.68;SB=-7.578e-03 GT:AD:DP:GQ:PL 1/1:1,27:28:39:360,39,0 chrXI 662044 . C T 685 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.67;MQ0=18;QD=14.89;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:75:718,75,0 chrXI 662123 . A G 2012 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=27.24;MQ0=10;QD=23.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2045,222,0 chrXI 662142 . T C 2262 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=9;QD=21.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2295,252,0 chrXI 662530 . C T 1695 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=23.58;MQ0=44;QD=13.14;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,128:129:99:1728,189,0 chrXI 662659 . A G 1722 filter AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=16.55;MQ0=81;QD=7.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,221:224:99:1755,204,0 chrXI 662743 . T C 4641.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.228;DP=262;Dels=0.00;FS=4.862;HaplotypeScore=23.1914;MLEAC=2;MLEAF=1.00;MQ=20.94;MQ0=44;MQRankSum=1.644;QD=17.71;ReadPosRankSum=3.404;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:4,258:262:99:4641,522,0 chrXI 662947 . T C 526.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;DP=260;Dels=0.00;FS=18.006;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=17.26;MQ0=61;MQRankSum=-1.327;QD=2.02;ReadPosRankSum=-0.372;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,120:260:99:556,0,910 chrXI 663021 . G A 790 filter AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=15.76;MQ0=65;QD=4.79;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,165:165:90:823,90,0 chrXI 663042 . C T 82.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;DP=100;Dels=0.00;FS=10.405;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=15.13;MQ0=60;MQRankSum=-2.598;QD=0.82;ReadPosRankSum=-2.325;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,31:100:99:112,0,331 chrXI 663043 . G C 505 filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=15.25;MQ0=60;QD=5.05;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,97:100:60:538,60,0 chrXI 663128 . A G 153.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.003;DP=29;Dels=0.00;FS=9.622;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=14.93;MQ0=18;MQRankSum=1.532;QD=5.28;ReadPosRankSum=2.003;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,27:29:21:186,21,0 chrXI 663135 . C A 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;DP=29;Dels=0.00;FS=12.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.96;MQ0=18;MQRankSum=-0.382;QD=1.41;ReadPosRankSum=-0.978;SB=0.507 GT:AD:DP:GQ:PL 0/1:15,14:29:39:71,0,39 chrXI 663211 . G A 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;DP=59;Dels=0.00;FS=5.494;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.55;MQ0=15;MQRankSum=-1.089;QD=2.14;ReadPosRankSum=1.213;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,22:59:99:156,0,457 chrXI 663226 . T C 991 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=24.32;MQ0=15;MQRankSum=1.286;QD=15.02;ReadPosRankSum=2.354;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1024,114,0 chrXI 663255 . G A 841 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.46;MQ0=3;QD=18.69;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:96:874,96,0 chrXI 663269 . A G 657 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.74;MQ0=2;QD=18.25;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:690,81,0 chrXI 663275 . A G 507 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.36;MQ0=1;QD=18.11;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:63:540,63,0 chrXI 663293 . C T 468 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.85;MQ0=2;QD=18.00;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:57:501,57,0 chrXI 663324 . T A 110.13 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.03;FS=0.000;HaplotypeScore=22.3170;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=5;QD=1.55;SB=-2.951e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:18:143,18,0 chrXI 663359 . A G 1721 filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.9911;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=6;QD=12.94;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:2,131:133:99:1754,195,0 chrXI 663366 . C T 2049 filter AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=4.4097;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=4;QD=13.66;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2082,228,0 chrXI 663380 . C T 2728 filter AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.0466;MLEAC=2;MLEAF=1.00;MQ=33.27;MQ0=5;QD=14.91;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,183:183:99:2761,294,0 chrXI 663476 . C A 645 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=11.9183;MLEAC=2;MLEAF=1.00;MQ=29.19;MQ0=8;QD=11.94;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:72:678,72,0 chrXI 663478 . A G 627 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=11.9183;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=8;QD=12.54;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:72:660,72,0 chrXI 663490 . A G 122.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;DP=73;Dels=0.00;FS=3.165;HaplotypeScore=12.8761;MLEAC=1;MLEAF=0.500;MQ=26.67;MQ0=9;MQRankSum=-1.085;QD=1.67;ReadPosRankSum=0.250;SB=-2.500e+02 GT:AD:DP:GQ:PL 0/1:21,52:73:99:152,0,174 chrXI 663509 . C A 581 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=2;QD=5.33;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:66:614,66,0 chrXI 663514 . C T 764 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=1;QD=6.26;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:87:797,87,0 chrXI 663652 . A G 466 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.23;MQ0=9;MQRankSum=-1.491;QD=8.79;ReadPosRankSum=1.652;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,51:53:63:499,63,0 chrXI 663653 . T A 429 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=56;Dels=0.00;FS=32.099;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=21.23;MQ0=9;MQRankSum=-2.589;QD=7.66;ReadPosRankSum=2.807;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:3,53:56:57:462,57,0 chrXI 663684 . C G 2323 filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=22.61;MQ0=8;QD=18.89;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2356,273,0 chrXI 663733 . A G 5026.01 filter AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=8.1349;MLEAC=2;MLEAF=1.00;MQ=26.46;MQ0=9;QD=20.43;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,245:246:99:5026,561,0 chrXI 663749 . T C 4677.01 filter AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=9;QD=19.41;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:4677,522,0 chrXI 663759 . T C 4109.01 filter AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=10;QD=18.68;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4109,453,0 chrXI 663830 . G A 1544 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=24.39;MQ0=19;QD=14.30;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1577,168,0 chrXI 663881 . T C 1347.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.863;DP=218;Dels=0.00;FS=6.989;HaplotypeScore=4.0303;MLEAC=1;MLEAF=0.500;MQ=27.30;MQ0=15;MQRankSum=-1.916;QD=6.18;ReadPosRankSum=1.063;SB=-5.870e+02 GT:AD:DP:GQ:PL 0/1:115,103:218:99:1377,0,1892 chrXI 663906 . A G 5014.01 filter AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=9.7260;MLEAC=2;MLEAF=1.00;MQ=27.42;MQ0=8;QD=18.64;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,267:269:99:5014,564,0 chrXI 664077 . T C 1971.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.987;DP=223;Dels=0.00;FS=3.122;HaplotypeScore=20.5492;MLEAC=1;MLEAF=0.500;MQ=37.72;MQ0=12;MQRankSum=0.427;QD=8.84;ReadPosRankSum=0.206;SB=-7.630e+02 GT:AD:DP:GQ:PL 0/1:113,110:223:99:2001,0,1970 chrXI 664111 . G A 6713.01 filter AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=17.9324;MLEAC=2;MLEAF=1.00;MQ=42.88;MQ0=20;QD=23.07;SB=-3.422e+03 GT:AD:DP:GQ:PL 1/1:0,290:291:99:6713,718,0 chrXI 664144 . C T 6550.01 filter AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=27;QD=22.82;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,286:287:99:6550,688,0 chrXI 664221 . T C 332.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.944;DP=63;Dels=0.00;FS=5.314;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=25.09;MQ0=19;MQRankSum=-0.770;QD=5.27;ReadPosRankSum=2.556;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:32,30:63:99:362,0,484 chrXI 664233 . C T 1007 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.81;MQ0=15;QD=16.51;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1040,114,0 chrXI 664250 . T A 1025 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=12;QD=17.08;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1058,108,0 chrXI 664256 . A G 948 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.24;MQ0=12;QD=16.07;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:981,108,0 chrXI 664262 . T C 1083 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=10;QD=17.19;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1116,117,0 chrXI 664264 . A G 1082 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=10;QD=17.17;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1115,117,0 chrXI 664267 . T C 1144 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.024;DP=82;Dels=0.00;FS=73.487;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.05;MQ0=10;MQRankSum=-3.311;QD=13.95;ReadPosRankSum=4.004;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:6,76:82:99:1177,129,0 chrXI 664278 . A G 1919 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=37.62;MQ0=7;QD=18.63;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1952,213,0 chrXI 664299 . A G 2926 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.04;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=2;QD=17.73;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,157:159:99:2959,324,0 chrXI 664310 . A G 4295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=211;Dels=0.00;FS=5.336;HaplotypeScore=15.6327;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=2;MQRankSum=0.904;QD=20.36;ReadPosRankSum=0.177;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,206:211:99:4295,474,0 chrXI 664363 . A G 8067.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.756;DP=351;Dels=0.00;FS=16.550;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=19;MQRankSum=-1.798;QD=22.98;ReadPosRankSum=3.831;SB=-3.892e+03 GT:AD:DP:GQ:PL 1/1:5,345:351:99:8067,880,0 chrXI 664428 . C T 396.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.495;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.8393;MLEAC=1;MLEAF=0.500;MQ=25.59;MQ0=62;MQRankSum=0.828;QD=3.25;ReadPosRankSum=1.246;SB=-1.300e+02 GT:AD:DP:GQ:PL 0/1:67,54:122:99:426,0,543 chrXI 664494 . G A 703 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=4;QD=18.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:78:736,78,0 chrXI 664498 . G A 792 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=1;QD=20.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:39:87:825,87,0 chrXI 664620 . A C 1201 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.039;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=28;MQRankSum=0.780;QD=10.18;ReadPosRankSum=2.395;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:1234,144,0 chrXI 664633 . C G 565 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=30.5915;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=15;QD=8.43;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,65:67:69:598,69,0 chrXI 664643 . T A 196.03 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.17;MQ0=2;QD=11.53;SB=-3.878e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:24:229,24,0 chrXI 664644 . T C 173.03 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.17;MQ0=2;QD=10.18;SB=-3.878e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:24:206,24,0 chrXI 664654 . G A 112.26 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.85;MQ0=1;QD=9.36;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:145,15,0 chrXI 664656 . G A 71.51 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.84;MQ0=2;QD=5.50;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,12:13:12:104,12,0 chrXI 664723 . T C 44.97 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.33;MQ0=6;QD=2.65;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:77,9,0 chrXI 664742 . A G 77.51 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=4;QD=2.98;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:12:110,12,0 chrXI 664748 . C A 79.51 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=4;QD=2.09;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:12:112,12,0 chrXI 664760 . A C 214.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=4.76;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,45:45:27:247,27,0 chrXI 664761 . A G 198.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=4.40;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,45:45:27:231,27,0 chrXI 664769 . T C 214.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.768;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.05;MQ0=1;MQRankSum=-1.453;QD=2.85;ReadPosRankSum=2.905;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:3,72:75:27:247,27,0 chrXI 664774 . C T 438 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=3;QD=5.47;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:51:471,51,0 chrXI 664805 . A T 1065 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=3;QD=8.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1098,117,0 chrXI 664809 . A G 997 filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=3;QD=8.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:1030,111,0 chrXI 664835 . A G 1809 filter AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=3;QD=13.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:1842,195,0 chrXI 664865 . G T 1995 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=3;QD=19.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2028,207,0 chrXI 664918 . C T 1616 filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.99;MQ0=36;QD=16.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1649,174,0 chrXI 664992 . G A 3798.01 filter AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=30.39;MQ0=16;QD=17.92;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:3798,397,0 chrXI 665090 . G A 3790.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=23.7959;MLEAC=2;MLEAF=1.00;MQ=30.06;MQ0=1;QD=19.74;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3790,400,0 chrXI 665125 . C T 5400.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=10.6707;MLEAC=2;MLEAF=1.00;MQ=31.82;MQ0=1;QD=22.88;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5400,565,0 chrXI 665170 . T C 4191.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=3;QD=20.85;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4191,444,0 chrXI 665216 . C T 1050 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=25.38;MQ0=3;QD=10.71;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1083,117,0 chrXI 665227 . A T 582 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.4942;MLEAC=2;MLEAF=1.00;MQ=22.24;MQ0=3;MQRankSum=-2.412;QD=8.43;ReadPosRankSum=2.374;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:66:615,66,0 chrXI 665228 . A G 583 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=21.02;MQ0=2;MQRankSum=-1.732;QD=8.83;ReadPosRankSum=1.678;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:69:616,69,0 chrXI 665230 . T C 551 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.83;MQ0=2;QD=8.48;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:66:584,66,0 chrXI 665232 . A G 628 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.83;MQ0=2;QD=9.66;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:69:661,69,0 chrXI 665268 . G A 1503 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=0;QD=17.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1536,159,0 chrXI 665280 . C G 1612 filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.54;MQ0=0;QD=16.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1645,177,0 chrXI 665287 . C T 1638 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.60;MQ0=0;QD=15.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1671,189,0 chrXI 665296 . G A 2069 filter AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=0;QD=16.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2102,216,0 chrXI 665316 . A G 2696 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;MQRankSum=0.666;QD=17.28;ReadPosRankSum=1.377;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2729,300,0 chrXI 665320 . G A 2851 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.38;MQ0=0;QD=18.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2884,300,0 chrXI 665324 . C A 2878 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;QD=18.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2911,300,0 chrXI 665330 . G A 2735 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=18.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2768,291,0 chrXI 665333 . A G 2625 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;MQRankSum=0.126;QD=17.38;ReadPosRankSum=1.709;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2658,285,0 chrXI 665352 . C G 2136 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=15.15;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2169,234,0 chrXI 665368 . G A 1761 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=16.01;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1794,189,0 chrXI 665385 . A G 1195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.215;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=0.425;QD=14.75;ReadPosRankSum=3.346;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:4,77:81:99:1228,135,0 chrXI 665398 . A G 665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.254;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=0;MQRankSum=0.481;QD=11.08;ReadPosRankSum=4.254;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:7,53:60:75:698,75,0 chrXI 665402 . T A 490 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=0;QD=10.65;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:54:523,54,0 chrXI 665501 . A G 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=12.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:57,6,0 chrXI 665530 . C A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrXI 666198 . A G 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=1.61;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,16:16:6:57,6,0 chrXI 666216 . T G 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=1;QD=1.14;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,20:20:6:54,6,0 chrXI 666221 . G A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.964;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=1;MQRankSum=1.156;QD=1.30;ReadPosRankSum=1.542;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:1,18:19:6:56,6,0 chrXI 666346 . G A 340.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;DP=25;Dels=0.00;FS=9.054;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.53;MQ0=2;MQRankSum=0.315;QD=13.60;ReadPosRankSum=3.536;SB=-1.600e+02 GT:AD:DP:GQ:PL 0/1:6,19:25:99:370,0,99 chrXI 666357 . T G 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.256;DP=25;Dels=0.00;FS=9.054;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.53;MQ0=2;MQRankSum=1.435;QD=2.72;ReadPosRankSum=-3.606;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,6:25:98:98,0,389 chrXI 666382 . A G 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;DP=32;Dels=0.00;FS=30.885;HaplotypeScore=7.9384;MLEAC=1;MLEAF=0.500;MQ=27.57;MQ0=1;MQRankSum=0.384;QD=2.31;ReadPosRankSum=-4.176;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,8:32:99:104,0,497 chrXI 666392 . G A 185.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.832;DP=40;Dels=0.00;FS=31.919;HaplotypeScore=8.7270;MLEAC=1;MLEAF=0.500;MQ=27.20;MQ0=2;MQRankSum=1.481;QD=4.63;ReadPosRankSum=0.708;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,11:40:99:215,0,485 chrXI 666404 . G A 153.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;DP=42;Dels=0.00;FS=4.859;HaplotypeScore=9.9608;MLEAC=1;MLEAF=0.500;MQ=27.04;MQ0=2;MQRankSum=-1.404;QD=3.64;ReadPosRankSum=0.156;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:27,15:42:99:183,0,593 chrXI 666412 . A G 491 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.945;DP=33;Dels=0.00;FS=11.155;HaplotypeScore=9.2296;MLEAC=2;MLEAF=1.00;MQ=26.49;MQ0=2;MQRankSum=1.819;QD=14.88;ReadPosRankSum=3.945;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:8,25:33:57:524,57,0 chrXI 666420 . C T 327 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=20;Dels=0.00;FS=7.782;HaplotypeScore=2.7044;MLEAC=2;MLEAF=1.00;MQ=26.57;MQ0=1;MQRankSum=1.349;QD=16.35;ReadPosRankSum=0.964;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,18:20:39:360,39,0 chrXI 666421 . T G 317 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=26.57;MQ0=1;QD=15.85;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:39:350,39,0 chrXI 666488 . A G 241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.566;DP=117;Dels=0.00;FS=5.402;HaplotypeScore=54.3467;MLEAC=2;MLEAF=1.00;MQ=25.13;MQ0=1;MQRankSum=1.613;QD=2.06;ReadPosRankSum=7.891;SB=-3.005e+00 GT:AD:DP:GQ:PL 1/1:89,28:117:30:274,30,0 chrXI 666493 . T C 116.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265;DP=137;Dels=0.00;FS=1.614;HaplotypeScore=72.9204;MLEAC=1;MLEAF=0.500;MQ=25.18;MQ0=1;MQRankSum=2.257;QD=0.85;ReadPosRankSum=5.175;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,22:137:99:146,0,107 chrXI 666511 . G T 126.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=108.8574;MLEAC=1;MLEAF=0.500;MQ=24.84;MQ0=1;MQRankSum=-0.706;QD=0.85;ReadPosRankSum=6.295;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:15,120:149:99:156,0,107 chrXI 666516 . G A 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;DP=144;Dels=0.00;FS=6.463;HaplotypeScore=49.9007;MLEAC=1;MLEAF=0.500;MQ=24.49;MQ0=1;MQRankSum=1.654;QD=0.27;ReadPosRankSum=0.915;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:99,45:144:69:69,0,168 chrXI 666518 . A G 42.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.906;DP=145;Dels=0.00;FS=6.463;HaplotypeScore=48.1542;MLEAC=1;MLEAF=0.500;MQ=24.44;MQ0=1;MQRankSum=1.371;QD=0.29;ReadPosRankSum=0.446;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:100,45:145:72:72,0,175 chrXI 666521 . G A 32.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.615;DP=150;Dels=0.00;FS=55.346;HaplotypeScore=48.9429;MLEAC=1;MLEAF=0.500;MQ=24.65;MQ0=0;MQRankSum=2.093;QD=0.21;ReadPosRankSum=2.425;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:124,26:150:62:62,0,290 chrXI 666522 . C G 415 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=35.1517;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;QD=2.79;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:51:448,51,0 chrXI 666533 . G A 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.686;DP=152;Dels=0.01;FS=9.439;HaplotypeScore=217.5537;MLEAC=1;MLEAF=0.500;MQ=24.81;MQ0=0;MQRankSum=0.031;QD=0.16;ReadPosRankSum=-0.019;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,42:151:54:54,0,281 chrXI 666535 . A G 374 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=187.0665;MLEAC=2;MLEAF=1.00;MQ=24.96;MQ0=0;MQRankSum=0.203;QD=2.56;ReadPosRankSum=0.609;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:1,145:146:48:407,48,0 chrXI 666538 . A G 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.307;DP=136;Dels=0.00;FS=14.302;HaplotypeScore=163.0174;MLEAC=1;MLEAF=0.500;MQ=25.36;MQ0=0;MQRankSum=2.322;QD=0.24;ReadPosRankSum=0.921;SB=-2.310e+02 GT:AD:DP:GQ:PL 0/1:73,63:136:58:63,0,58 chrXI 666539 . T G 89.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;DP=136;Dels=0.00;FS=28.330;HaplotypeScore=161.0507;MLEAC=1;MLEAF=0.500;MQ=25.44;MQ0=0;MQRankSum=1.249;QD=0.65;ReadPosRankSum=0.669;SB=-2.170e+02 GT:AD:DP:GQ:PL 0/1:48,35:136:93:119,0,93 chrXI 666544 . T A 212 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=118.5298;MLEAC=2;MLEAF=1.00;MQ=25.64;MQ0=0;QD=1.41;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:30:245,30,0 chrXI 666562 . G A 119.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.828;DP=150;Dels=0.00;FS=21.688;HaplotypeScore=94.2264;MLEAC=1;MLEAF=0.500;MQ=25.48;MQ0=0;MQRankSum=1.966;QD=0.79;ReadPosRankSum=-0.135;SB=-1.470e+02 GT:AD:DP:GQ:PL 0/1:118,32:150:99:149,0,249 chrXI 666566 . T A 163.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;DP=144;Dels=0.00;FS=16.815;HaplotypeScore=165.1002;MLEAC=1;MLEAF=0.500;MQ=25.48;MQ0=0;MQRankSum=-0.344;QD=1.13;ReadPosRankSum=0.020;SB=-8.501e+01 GT:AD:DP:GQ:PL 0/1:33,92:144:99:193,0,125 chrXI 666573 . G T 119.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.270;DP=140;Dels=0.00;FS=15.325;HaplotypeScore=256.3786;MLEAC=1;MLEAF=0.500;MQ=25.24;MQ0=0;MQRankSum=2.191;QD=0.85;ReadPosRankSum=1.397;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:108,32:140:99:149,0,230 chrXI 666577 . C G 16.15 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.407;DP=106;Dels=0.00;FS=26.675;HaplotypeScore=106.3950;MLEAC=1;MLEAF=0.500;MQ=25.10;MQ0=0;MQRankSum=-0.201;QD=0.15;ReadPosRankSum=2.292;SB=-3.051e+00 GT:AD:DP:GQ:PL 0/1:2,29:106:18:46,0,18 chrXI 666578 . A G 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.021;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=91.0887;MLEAC=2;MLEAF=1.00;MQ=25.10;MQ0=0;MQRankSum=2.174;QD=0.47;ReadPosRankSum=-0.660;SB=-6.972e+00 GT:AD:DP:GQ:PL 1/1:75,31:106:9:82,9,0 chrXI 666587 . G A 252 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.913;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=115.1332;MLEAC=2;MLEAF=1.00;MQ=24.77;MQ0=0;MQRankSum=1.211;QD=2.71;ReadPosRankSum=-0.838;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:1,92:93:36:285,36,0 chrXI 666590 . G A,T 195.01 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=31.8280;MLEAC=1,1;MLEAF=0.500,0.500;MQ=24.67;MQ0=0;MQRankSum=0.731;QD=2.14;ReadPosRankSum=-2.095;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/2:14,30,47:91:57:255,178,184,62,0,57 chrXI 666605 . G A 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.170;DP=63;Dels=0.00;FS=2.362;HaplotypeScore=124.8855;MLEAC=1;MLEAF=0.500;MQ=24.99;MQ0=0;MQRankSum=0.311;QD=0.17;ReadPosRankSum=0.574;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:28,35:63:31:40,0,31 chrXII 5803 . C T 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.18;MQ0=8;QD=1.46;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:6:56,6,0 chrXII 11181 . C A 213.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.04;MQ0=12;QD=8.52;SB=-2.899e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:27:246,27,0 chrXII 11182 . A G 202.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.04;MQ0=12;QD=8.08;SB=-2.899e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:27:235,27,0 chrXII 11191 . T G 203.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=30;Dels=0.00;FS=2.667;HaplotypeScore=4.3541;MLEAC=2;MLEAF=1.00;MQ=18.93;MQ0=12;MQRankSum=-1.189;QD=6.77;ReadPosRankSum=2.887;SB=-2.899e+01 GT:AD:DP:GQ:PL 1/1:4,25:30:27:236,27,0 chrXII 11226 . A C 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.332;DP=75;Dels=0.04;FS=0.000;HaplotypeScore=89.1632;MLEAC=1;MLEAF=0.500;MQ=22.20;MQ0=5;MQRankSum=-0.375;QD=0.57;ReadPosRankSum=-1.923;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,15:72:73:73,0,668 chrXII 11250 . A C 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;DP=42;Dels=0.02;FS=0.000;HaplotypeScore=41.7883;MLEAC=1;MLEAF=0.500;MQ=24.13;MQ0=4;MQRankSum=-0.789;QD=0.88;ReadPosRankSum=-1.191;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,13:41:67:67,0,363 chrXII 11292 . C A 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;DP=54;Dels=0.04;FS=7.347;HaplotypeScore=26.5151;MLEAC=1;MLEAF=0.500;MQ=21.37;MQ0=13;MQRankSum=-0.301;QD=0.39;ReadPosRankSum=-1.092;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,8:52:51:51,0,347 chrXII 11399 . C T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=55.6515;MLEAC=2;MLEAF=1.00;MQ=24.69;MQ0=2;QD=0.40;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,58:59:6:55,6,0 chrXII 11403 . C T 15.25 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.303;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=28.8000;MLEAC=1;MLEAF=0.500;MQ=24.62;MQ0=3;MQRankSum=1.103;QD=0.24;ReadPosRankSum=1.876;SB=1.65 GT:AD:DP:GQ:PL 0/1:7,48:64:13:45,0,13 chrXII 11404 . A C 15.25 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.967;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=28.8000;MLEAC=1;MLEAF=0.500;MQ=24.62;MQ0=3;MQRankSum=0.284;QD=0.24;ReadPosRankSum=3.149;SB=-1.140e-01 GT:AD:DP:GQ:PL 0/1:11,45:64:13:45,0,13 chrXII 11408 . C T 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=28.8000;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=3;QD=0.62;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,71:71:9:76,9,0 chrXII 11448 . T C 76.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.995;DP=105;Dels=0.00;FS=44.686;HaplotypeScore=30.8945;MLEAC=1;MLEAF=0.500;MQ=22.10;MQ0=14;MQRankSum=0.279;QD=0.72;ReadPosRankSum=-1.055;SB=-9.750e+01 GT:AD:DP:GQ:PL 0/1:28,77:105:99:106,0,170 chrXII 11458 . G A,T 295.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=20.5548;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.83;MQ0=14;QD=2.95;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/2:0,80,19:99:99:355,193,172,161,0,137 chrXII 11554 . G A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=38.7973;MLEAC=2;MLEAF=1.00;MQ=26.46;MQ0=0;QD=0.79;SB=-1.218e+02 GT:AD:DP:GQ:PL 1/1:0,21:25:6:51,6,0 chrXII 11619 . T A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.179;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.96;MQ0=3;MQRankSum=0.762;QD=1.00;ReadPosRankSum=-0.067;SB=1.87 GT:AD:DP:GQ:PL 1/1:4,8:12:6:43,6,0 chrXII 11635 . T C 173.04 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.703;DP=31;Dels=0.00;FS=1.815;HaplotypeScore=5.3746;MLEAC=1;MLEAF=0.500;MQ=21.25;MQ0=7;MQRankSum=1.010;QD=5.58;ReadPosRankSum=0.029;SB=-8.304e+01 GT:AD:DP:GQ:PL 0/1:19,12:31:18:203,0,18 chrXII 11672 . T C 41.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.483;DP=48;Dels=0.00;FS=22.751;HaplotypeScore=28.4145;MLEAC=2;MLEAF=1.00;MQ=25.23;MQ0=8;MQRankSum=0.650;QD=0.87;ReadPosRankSum=4.117;SB=-3.039e+02 GT:AD:DP:GQ:PL 1/1:9,39:48:9:74,9,0 chrXII 11717 . T A 2290 filter AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=35.6316;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=7;QD=17.35;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,110:131:99:2323,243,0 chrXII 11780 . C G 387 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=1;QD=9.44;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,34:41:51:420,51,0 chrXII 11781 . A G 208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.031;DP=24;Dels=0.00;FS=50.171;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=1;MQRankSum=-1.016;QD=8.67;ReadPosRankSum=3.908;SB=-2.202e+01 GT:AD:DP:GQ:PL 1/1:11,13:24:27:241,27,0 chrXII 11846 . T C 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.935;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.83;MQ0=2;MQRankSum=1.876;QD=4.53;ReadPosRankSum=2.742;SB=-8.690e-03 GT:AD:DP:GQ:PL 0/1:10,9:19:30:116,0,30 chrXII 11849 . T C 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.69;MQ0=2;MQRankSum=-1.584;QD=1.52;ReadPosRankSum=-2.007;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,12:23:65:65,0,146 chrXII 11866 . C A 299.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.936;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.31;MQ0=4;MQRankSum=2.991;QD=5.34;ReadPosRankSum=-1.695;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,22:56:99:329,0,308 chrXII 11874 . T C 1032 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=72;Dels=0.00;FS=46.804;HaplotypeScore=20.9516;MLEAC=2;MLEAF=1.00;MQ=25.50;MQ0=5;MQRankSum=1.683;QD=14.33;ReadPosRankSum=2.895;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,69:72:99:1065,117,0 chrXII 11878 . T C 41.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.798;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.3577;MLEAC=1;MLEAF=0.500;MQ=25.26;MQ0=7;MQRankSum=0.391;QD=0.54;ReadPosRankSum=2.371;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,13:76:71:71,0,758 chrXII 11879 . C G 1034 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.3577;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=7;QD=13.61;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1067,126,0 chrXII 11913 . G A 1050.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.664;DP=112;Dels=0.00;FS=23.650;HaplotypeScore=40.9912;MLEAC=1;MLEAF=0.500;MQ=25.29;MQ0=15;MQRankSum=3.026;QD=9.38;ReadPosRankSum=-0.688;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,73:112:99:1080,0,198 chrXII 11916 . A G 1032.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.581;DP=112;Dels=0.00;FS=27.443;HaplotypeScore=29.2637;MLEAC=1;MLEAF=0.500;MQ=25.43;MQ0=14;MQRankSum=3.829;QD=9.21;ReadPosRankSum=-0.071;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,75:112:99:1062,0,122 chrXII 11938 . C T 1065.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.490;DP=100;Dels=0.00;FS=26.829;HaplotypeScore=12.7350;MLEAC=1;MLEAF=0.500;MQ=25.98;MQ0=13;MQRankSum=4.339;QD=10.65;ReadPosRankSum=1.840;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:22,78:100:39:1095,0,39 chrXII 11942 . A G 910.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.316;DP=95;Dels=0.00;FS=18.234;HaplotypeScore=12.7350;MLEAC=1;MLEAF=0.500;MQ=25.81;MQ0=13;MQRankSum=4.249;QD=9.58;ReadPosRankSum=3.803;SB=-6.514e-03 GT:AD:DP:GQ:PL 0/1:34,61:95:99:940,0,99 chrXII 11946 . C T 810.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.478;DP=83;Dels=0.00;FS=19.058;HaplotypeScore=9.4572;MLEAC=2;MLEAF=1.00;MQ=24.65;MQ0=13;MQRankSum=5.383;QD=9.76;ReadPosRankSum=4.396;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:30,53:83:18:843,18,0 chrXII 11947 . A C 768.08 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.040;DP=83;Dels=0.00;FS=19.058;HaplotypeScore=9.4572;MLEAC=2;MLEAF=1.00;MQ=24.65;MQ0=13;MQRankSum=4.999;QD=9.25;ReadPosRankSum=4.301;SB=-9.252e-02 GT:AD:DP:GQ:PL 1/1:30,53:83:20:801,20,0 chrXII 11956 . A G 693 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.454;DP=65;Dels=0.00;FS=30.935;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=25.53;MQ0=11;MQRankSum=2.684;QD=10.66;ReadPosRankSum=0.922;SB=-9.976e-03 GT:AD:DP:GQ:PL 1/1:17,48:65:34:726,34,0 chrXII 11965 . G A 583 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=24.91;MQ0=10;QD=11.21;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,42:52:63:616,63,0 chrXII 11969 . C T 538 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=9;MQRankSum=2.317;QD=11.70;ReadPosRankSum=-0.840;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:11,35:46:63:571,63,0 chrXII 11993 . C T 100.26 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;QD=7.71;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:133,15,0 chrXII 12108 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.01;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:43,6,0 chrXII 12119 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;MQRankSum=0.727;QD=3.01;ReadPosRankSum=0.727;SB=1.45 GT:AD:DP:GQ:PL 1/1:1,3:4:6:43,6,0 chrXII 12127 . T A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;MQRankSum=-0.727;QD=3.01;ReadPosRankSum=0.727;SB=1.45 GT:AD:DP:GQ:PL 1/1:1,3:4:6:43,6,0 chrXII 12139 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.88;MQ0=2;QD=2.01;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:1,5:6:6:43,6,0 chrXII 12141 . C A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.02;MQ0=4;QD=1.51;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,6:8:6:43,6,0 chrXII 13527 . T A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.035;DP=87;Dels=0.00;FS=29.222;HaplotypeScore=7.3589;MLEAC=2;MLEAF=1.00;MQ=14.80;MQ0=53;MQRankSum=4.891;QD=0.23;ReadPosRankSum=0.104;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:64,21:87:6:51,6,0 chrXII 13533 . C T 143.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=106;Dels=0.00;FS=42.443;HaplotypeScore=11.3458;MLEAC=2;MLEAF=1.00;MQ=16.71;MQ0=56;MQRankSum=4.259;QD=1.35;ReadPosRankSum=-2.737;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:59,44:106:18:176,18,0 chrXII 13593 . C T 1236 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.641;DP=178;Dels=0.00;FS=56.787;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=22.02;MQ0=35;MQRankSum=2.627;QD=6.94;ReadPosRankSum=-0.387;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:20,158:178:99:1269,132,0 chrXII 13605 . A T 1192 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=184;Dels=0.00;FS=35.151;HaplotypeScore=7.0283;MLEAC=2;MLEAF=1.00;MQ=22.05;MQ0=35;MQRankSum=3.270;QD=6.48;ReadPosRankSum=2.523;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:32,152:184:99:1225,129,0 chrXII 13616 . T C 1125 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.994;DP=164;Dels=0.00;FS=27.931;HaplotypeScore=3.7766;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=26;MQRankSum=2.908;QD=6.86;ReadPosRankSum=1.520;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:17,145:164:99:1158,129,0 chrXII 13638 . C G 351.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=78.4027;MLEAC=1;MLEAF=0.500;MQ=23.48;MQ0=12;MQRankSum=0.695;QD=2.95;ReadPosRankSum=3.028;SB=-1.186e-02 GT:AD:DP:GQ:PL 0/1:18,101:119:26:381,0,26 chrXII 13651 . T A 449 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.222;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=6;MQRankSum=-0.492;QD=4.45;ReadPosRankSum=0.237;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:1,100:101:51:482,51,0 chrXII 13663 . C A,T 351.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.402;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.18;MQ0=6;MQRankSum=1.677;QD=5.09;ReadPosRankSum=1.677;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:6,23,40:69:99:411,227,206,184,0,157 chrXII 13664 . T C 393 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=6;MQRankSum=2.373;QD=5.61;ReadPosRankSum=2.373;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:7,63:70:48:426,48,0 chrXII 13683 . G A 202.03 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.22;MQ0=6;QD=3.81;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,53:53:24:235,24,0 chrXII 13715 . T C 135.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.033;DP=77;Dels=0.00;FS=23.700;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.09;MQ0=20;MQRankSum=2.837;QD=1.75;ReadPosRankSum=3.687;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:9,68:77:18:168,18,0 chrXII 13727 . A G 106.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.484;DP=71;Dels=0.00;FS=106.711;HaplotypeScore=7.5730;MLEAC=2;MLEAF=1.00;MQ=14.09;MQ0=20;MQRankSum=2.020;QD=1.50;ReadPosRankSum=2.690;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:36,35:71:15:139,15,0 chrXII 13730 . C T 77.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.823;DP=69;Dels=0.00;FS=30.586;HaplotypeScore=7.5730;MLEAC=2;MLEAF=1.00;MQ=13.86;MQ0=19;MQRankSum=-1.848;QD=1.12;ReadPosRankSum=1.402;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:27,41:69:12:110,12,0 chrXII 13765 . A T 2048 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.217;DP=172;Dels=0.00;FS=243.883;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=23.86;MQ0=20;MQRankSum=2.973;QD=11.91;ReadPosRankSum=0.104;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:36,136:172:99:2081,206,0 chrXII 13785 . G A 2638 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.710;DP=202;Dels=0.00;FS=227.992;HaplotypeScore=14.2309;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=18;MQRankSum=2.496;QD=13.06;ReadPosRankSum=3.363;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:44,157:202:99:2671,250,0 chrXII 13875 . A T 1017 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.861;DP=99;Dels=0.00;FS=34.208;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=4;MQRankSum=2.154;QD=10.27;ReadPosRankSum=4.810;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:10,89:99:99:1050,111,0 chrXII 13876 . G T 1001 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.043;DP=100;Dels=0.00;FS=23.685;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.52;MQ0=4;MQRankSum=1.337;QD=10.01;ReadPosRankSum=4.058;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:9,90:100:99:1034,108,0 chrXII 13986 . G A 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.027;DP=80;Dels=0.00;FS=7.549;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;MQRankSum=2.007;QD=22.76;ReadPosRankSum=1.470;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:2,77:80:99:1854,192,0 chrXII 14265 . G T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.55;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3270,342,0 chrXII 14317 . G A 2692 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.43;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2725,291,0 chrXII 14318 . C T 2752 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.13;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2785,291,0 chrXII 14785 . A G 3870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=4.095;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.620;QD=20.05;ReadPosRankSum=1.677;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:1,189:193:99:3870,420,0 chrXII 14801 . T A 4042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-0.675;QD=21.16;ReadPosRankSum=1.714;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4042,418,0 chrXII 14975 . C T 5588.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.30;SB=-2.978e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5588,609,0 chrXII 15102 . T G 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=176;Dels=0.00;FS=6.889;HaplotypeScore=10.9801;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.137;QD=22.77;ReadPosRankSum=2.365;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:2,172:176:99:4008,444,0 chrXII 15147 . T G 4470.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=21.9736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4470,486,0 chrXII 15269 . C T 4362.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=24.37;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4362,468,0 chrXII 15466 . G A 3585.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=22.27;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3585,367,0 chrXII 15467 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.53;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3488,372,0 chrXII 15806 . G A 4578.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.6644;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.90;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4578,495,0 chrXII 15923 . A C 5932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=-0.097;QD=22.05;ReadPosRankSum=1.681;SB=-3.544e+03 GT:AD:DP:GQ:PL 1/1:1,268:269:99:5932,663,0 chrXII 15931 . G C 6026.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=22.15;SB=-3.475e+03 GT:AD:DP:GQ:PL 1/1:0,266:272:99:6026,663,0 chrXII 15995 . C T 4611.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.2940;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.65;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4611,492,0 chrXII 16099 . A T 5214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=228;Dels=0.00;FS=5.245;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.405;QD=22.87;ReadPosRankSum=2.952;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:3,225:228:99:5214,544,0 chrXII 16137 . T C 4832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=228;Dels=0.00;FS=3.951;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=-1.364;QD=21.19;ReadPosRankSum=1.717;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:1,225:228:99:4832,519,0 chrXII 16146 . A G 4308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=213;Dels=0.00;FS=5.499;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-1.441;QD=20.23;ReadPosRankSum=2.929;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:3,209:213:99:4308,462,0 chrXII 16175 . A C 4026.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.2836;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=20.86;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4026,441,0 chrXII 16291 . G A 5441.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.6942;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=25.43;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:5441,583,0 chrXII 16311 . G A 4870.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=25.50;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4870,511,0 chrXII 16338 . A C 3921.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.4365;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=23.62;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3921,429,0 chrXII 16487 . G A 3420.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=20.36;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3420,360,0 chrXII 16523 . C G 2260 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=33.78;MQ0=0;QD=15.37;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2293,249,0 chrXII 16528 . G A 2150 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=0;QD=14.83;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2183,231,0 chrXII 16531 . T C 2063 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.608;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=31.97;MQ0=0;MQRankSum=-1.584;QD=14.74;ReadPosRankSum=1.658;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2096,225,0 chrXII 16532 . T C 2022 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=142;Dels=0.00;FS=7.238;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=32.54;MQ0=0;MQRankSum=-2.138;QD=14.24;ReadPosRankSum=2.380;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2055,225,0 chrXII 16562 . T A 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=3.089;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;MQRankSum=-1.131;QD=17.08;ReadPosRankSum=1.711;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:2886,303,0 chrXII 16589 . A G 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=178;Dels=0.00;FS=3.015;HaplotypeScore=6.3158;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=1.068;QD=18.57;ReadPosRankSum=2.422;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:3305,366,0 chrXII 16672 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=25.01;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3877,406,0 chrXII 17014 . C T 2757 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2790,294,0 chrXII 17048 . T C 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.6209;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.257;QD=23.83;ReadPosRankSum=1.668;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2607,282,0 chrXII 17666 . T C 3294.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=21.39;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3294,354,0 chrXII 17672 . T C 3126 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.6812;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=20.04;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3159,345,0 chrXII 17679 . T G 2997 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=20.11;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3030,330,0 chrXII 17745 . C G 2592 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=18.92;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2625,285,0 chrXII 17755 . C T 2864 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.17;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:2897,300,0 chrXII 17815 . G A 3406.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.29;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3406,360,0 chrXII 17865 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=22.78;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3245,339,0 chrXII 17874 . T G 3031 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=21.35;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3064,336,0 chrXII 17914 . C G 2383 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=19.06;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2416,273,0 chrXII 17945 . A C 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=3.253;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=-0.953;QD=20.30;ReadPosRankSum=1.705;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2672,297,0 chrXII 17994 . G A 3383.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.49;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3383,351,0 chrXII 18087 . G C 3354.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=22.97;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3354,363,0 chrXII 18108 . T C 3423.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=22.52;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3423,369,0 chrXII 18150 . C T 2786 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.21;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2819,309,0 chrXII 18156 . G A 2826 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.22;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2859,297,0 chrXII 18183 . A G 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=177;Dels=0.00;FS=3.479;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-1.417;QD=19.30;ReadPosRankSum=1.693;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3416,372,0 chrXII 18249 . A G 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=157;Dels=0.00;FS=6.883;HaplotypeScore=9.2666;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.519;QD=21.78;ReadPosRankSum=2.418;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:2,152:157:99:3419,390,0 chrXII 18273 . G A 3848.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.62;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3848,426,0 chrXII 18330 . C T 4744.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.3820;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=22.59;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4744,507,0 chrXII 18460 . C T 3788.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.02;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3788,396,0 chrXII 18518 . G A 3869.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.80;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3869,423,0 chrXII 18579 . A C 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=0.979;QD=20.55;ReadPosRankSum=1.682;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2890,309,0 chrXII 18580 . G C 2861 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.73;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2894,315,0 chrXII 18829 . T C 5001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.7413;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.550;QD=24.04;ReadPosRankSum=1.649;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:5001,535,0 chrXII 19080 . C T 5474.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.71;SB=-3.321e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5474,568,0 chrXII 19101 . G A 5790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.925;DP=269;Dels=0.00;FS=3.043;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.925;QD=21.52;ReadPosRankSum=-0.456;SB=-3.496e+03 GT:AD:DP:GQ:PL 1/1:1,266:269:99:5790,610,0 chrXII 19191 . T A 5589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=240;Dels=0.00;FS=4.611;HaplotypeScore=13.5810;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.592;QD=23.29;ReadPosRankSum=-0.693;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:1,239:240:99:5589,573,0 chrXII 19236 . A G 4641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=15.5840;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.484;QD=22.00;ReadPosRankSum=1.716;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4641,516,0 chrXII 19300 . T C 4894.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.87;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4894,528,0 chrXII 19419 . A G 4477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=193;Dels=0.00;FS=3.313;HaplotypeScore=13.7081;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.781;QD=23.20;ReadPosRankSum=1.714;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4477,486,0 chrXII 19819 . T G 2088 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=22.45;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2121,234,0 chrXII 19832 . C T 2282 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=23.29;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2315,243,0 chrXII 19847 . T A 2261 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=23.31;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2294,234,0 chrXII 20031 . T C 3036 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.5529;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.18;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3069,336,0 chrXII 20228 . G T 3994.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.0163;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.36;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3994,420,0 chrXII 20311 . A G 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=168;Dels=0.00;FS=3.697;HaplotypeScore=16.2746;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.056;QD=22.70;ReadPosRankSum=1.690;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,163:168:99:3813,411,0 chrXII 20376 . C T 4972.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=24.98;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4972,523,0 chrXII 20402 . A G 4610.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=23.17;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4610,522,0 chrXII 20489 . A G 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.2973;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.038;QD=19.51;ReadPosRankSum=1.682;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2745,294,0 chrXII 20616 . G A 2957 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=138.2107;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=19.20;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2990,321,0 chrXII 20678 . T C 2765 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.34;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2798,297,0 chrXII 20699 . G A 2790 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=23.64;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2823,306,0 chrXII 20715 . C T 2951 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.59;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2984,321,0 chrXII 20815 . T C 1608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=77;Dels=0.00;FS=4.601;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-1.363;QD=20.88;ReadPosRankSum=1.640;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,74:77:99:1641,180,0 chrXII 21019 . T C 2338 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=24.61;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2371,267,0 chrXII 21053 . T A 2473 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=24.49;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2506,264,0 chrXII 21246 . T G 4016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=0.164;QD=19.98;ReadPosRankSum=1.698;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4016,447,0 chrXII 21252 . T C 3794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=1.081;QD=19.26;ReadPosRankSum=1.662;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3794,432,0 chrXII 21678 . C T 5302.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=8.6663;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.12;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5302,553,0 chrXII 21693 . C G 5509.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.87;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:5509,600,0 chrXII 21869 . A G 5433.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.58;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5433,612,0 chrXII 21938 . G A 4385.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=23.58;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4385,454,0 chrXII 21957 . C T 3842.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.46;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3842,417,0 chrXII 21995 . A C 4398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=16.3886;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=0.725;QD=21.14;ReadPosRankSum=1.681;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:1,202:208:99:4398,483,0 chrXII 22201 . A G 4636.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.65;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4636,510,0 chrXII 22332 . T G 5019.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=15.6068;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5019,546,0 chrXII 22416 . C T 3695.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.99;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3695,396,0 chrXII 22467 . T C 3847.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.5150;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3847,423,0 chrXII 22509 . G A 3846.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.8149;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.23;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3846,420,0 chrXII 22902 . T A 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=195;Dels=0.00;FS=13.305;HaplotypeScore=15.1309;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=2.308;QD=21.71;ReadPosRankSum=3.172;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:4,191:195:99:4234,459,0 chrXII 22958 . A G 5264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=15.2933;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.708;QD=22.69;ReadPosRankSum=1.717;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:1,229:232:99:5264,579,0 chrXII 23199 . C G 4917.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.1722;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.99;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4917,531,0 chrXII 23393 . G A 4708.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.9783;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4708,499,0 chrXII 23475 . C T 4219.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.42;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4219,445,0 chrXII 23826 . C G 4061.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4061,441,0 chrXII 23900 . G A 5890.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=24.7785;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.72;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5890,619,0 chrXII 23981 . C T 5671.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.6459;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5671,598,0 chrXII 25369 . T G 1665 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.45;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1698,186,0 chrXII 25451 . G A 2389 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.97;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2422,249,0 chrXII 26710 . C T 3822.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3822,417,0 chrXII 27042 . G A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=25.63;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4204,442,0 chrXII 28676 . G C 3976.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3976,438,0 chrXII 29085 . G C 4984.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.0603;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.97;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4984,546,0 chrXII 29131 . C T 5607.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5607,589,0 chrXII 29189 . A G 5785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=262;Dels=0.00;FS=2.650;HaplotypeScore=16.2340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.835;QD=22.08;ReadPosRankSum=2.383;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:2,259:262:99:5785,627,0 chrXII 29437 . T A 4715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=214;Dels=0.00;FS=2.901;HaplotypeScore=18.1678;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.816;QD=22.03;ReadPosRankSum=2.426;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:4715,499,0 chrXII 29612 . A G 5025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.040;DP=221;Dels=0.00;FS=13.921;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-2.097;QD=22.74;ReadPosRankSum=4.112;SB=-2.436e+03 GT:AD:DP:GQ:PL 1/1:6,213:221:99:5025,552,0 chrXII 29693 . T C 3882.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.91;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3882,426,0 chrXII 29773 . C A 4637.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=17.7570;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.66;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4637,484,0 chrXII 30457 . T G 3917.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.46;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3917,438,0 chrXII 30657 . T C 3807.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.01;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3807,420,0 chrXII 30768 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.11;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3264,354,0 chrXII 30927 . C T 3714.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.93;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3714,390,0 chrXII 31473 . C T 2952 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.29;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2985,309,0 chrXII 31754 . A G 2067 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.21;MQ0=0;QD=25.52;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2100,228,0 chrXII 31775 . C T 1533 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.80;MQ0=0;QD=23.95;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1566,168,0 chrXII 31777 . G A 1554 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=25.06;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1587,168,0 chrXII 31789 . G C 1338 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=21.24;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1371,153,0 chrXII 31811 . G A 918 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.77;MQ0=0;QD=18.73;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:951,102,0 chrXII 31812 . G A 965 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:998,102,0 chrXII 31828 . A C 742 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.423;QD=16.49;ReadPosRankSum=1.655;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,44:45:87:775,87,0 chrXII 31830 . T C 777 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:87:810,87,0 chrXII 31839 . A G 748 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.356;QD=16.26;ReadPosRankSum=1.657;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,45:46:84:781,84,0 chrXII 31899 . T A 889 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;QD=15.07;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:922,99,0 chrXII 31962 . T C 1877 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=21.83;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1910,204,0 chrXII 31975 . C T 1792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.507;DP=120;Dels=0.00;FS=166.122;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;MQRankSum=6.594;QD=14.93;ReadPosRankSum=7.882;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:29,91:120:99:1825,192,0 chrXII 31987 . A G 1820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-5.301;DP=127;Dels=0.00;FS=174.175;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;MQRankSum=6.160;QD=14.33;ReadPosRankSum=6.498;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:30,96:127:99:1853,204,0 chrXII 32078 . C T 2395 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=25.21;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2428,252,0 chrXII 32274 . G A 2332 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.80;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2365,255,0 chrXII 32398 . G T 1591 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=18.72;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1624,174,0 chrXII 32399 . G A 1608 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.70;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1641,174,0 chrXII 32690 . T C 2532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=3.476;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.440;QD=21.28;ReadPosRankSum=1.673;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2565,282,0 chrXII 32702 . C T 2574 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.63;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2607,279,0 chrXII 32827 . G C 2585 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.72;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2618,282,0 chrXII 32843 . C G 2541 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.69;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2574,279,0 chrXII 32920 . T C 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;DP=147;Dels=0.00;FS=2.658;HaplotypeScore=15.3880;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.143;QD=23.61;ReadPosRankSum=2.416;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3470,375,0 chrXII 33093 . A G 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=157;Dels=0.00;FS=3.419;HaplotypeScore=4.0285;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=0.355;QD=21.64;ReadPosRankSum=1.688;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3398,372,0 chrXII 33112 . A G 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.9328;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=1.084;QD=21.73;ReadPosRankSum=1.651;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3759,402,0 chrXII 33143 . A G 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=185;Dels=0.00;FS=2.997;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.906;QD=21.46;ReadPosRankSum=2.423;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:2,181:185:99:3970,429,0 chrXII 33717 . G C 3310.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3310,369,0 chrXII 34343 . G A 3162 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8967;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.60;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3195,333,0 chrXII 34786 . T C 4175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=175;Dels=0.00;FS=5.293;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=1.420;QD=23.86;ReadPosRankSum=2.891;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:4175,450,0 chrXII 34944 . A G 5440.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=12.9821;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=23.76;SB=-2.890e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5440,591,0 chrXII 35024 . G A 5547.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=23.71;SB=-2.960e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5547,586,0 chrXII 35034 . G C 4874.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=22.05;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:0,217:221:99:4874,531,0 chrXII 35064 . T C 4896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-1.242;QD=22.25;ReadPosRankSum=1.716;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:4896,534,0 chrXII 35190 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=169;Dels=0.00;FS=2.539;HaplotypeScore=7.1801;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;MQRankSum=-1.649;QD=22.60;ReadPosRankSum=2.911;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3819,411,0 chrXII 35196 . A G 3358.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;QD=22.09;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3358,363,0 chrXII 35207 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=22.66;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3399,351,0 chrXII 35209 . A T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;QD=22.21;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3310,348,0 chrXII 35238 . T G 2642 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=20.32;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2675,297,0 chrXII 35267 . T C 2256 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=20.89;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2289,246,0 chrXII 35362 . C T 1610 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=19.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1643,171,0 chrXII 35464 . C G 958 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=19.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:991,108,0 chrXII 35481 . T C 998 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;MQRankSum=-2.123;QD=14.68;ReadPosRankSum=2.377;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1031,111,0 chrXII 35482 . A G 942 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;QD=13.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:70:99:975,111,0 chrXII 35616 . T C 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.260;QD=23.07;ReadPosRankSum=1.674;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2802,303,0 chrXII 35626 . G A 2794 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=23.09;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2827,294,0 chrXII 35671 . C T 2693 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=18.96;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2726,306,0 chrXII 35677 . T C 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=140;Dels=0.00;FS=6.373;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;MQRankSum=-1.105;QD=17.91;ReadPosRankSum=2.344;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2541,270,0 chrXII 35727 . C T 3941.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.1218;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=20.63;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:3941,412,0 chrXII 35779 . T C 5268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=233;Dels=0.00;FS=3.067;HaplotypeScore=13.6485;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=1.597;QD=22.61;ReadPosRankSum=1.717;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:1,230:233:99:5268,576,0 chrXII 35952 . G A 4789.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.97;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4789,499,0 chrXII 35965 . T C 4568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-1.524;QD=21.05;ReadPosRankSum=1.668;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:4568,504,0 chrXII 36125 . T C 4769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=242;Dels=0.00;FS=10.825;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-0.880;QD=19.71;ReadPosRankSum=2.946;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:3,239:242:99:4769,549,0 chrXII 36134 . C T 5318.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=21.27;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5318,582,0 chrXII 36230 . T C 3337.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=21.53;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3337,369,0 chrXII 36298 . T C 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=3.541;HaplotypeScore=8.1427;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-1.394;QD=20.53;ReadPosRankSum=1.672;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3573,405,0 chrXII 36311 . C T 3718.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=21.62;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3718,399,0 chrXII 36398 . T C 3451.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.97;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3451,369,0 chrXII 36458 . T A 2485 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.67;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2518,264,0 chrXII 36477 . C G 2166 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.88;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2199,237,0 chrXII 36561 . G A 1925 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.6388;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=19.85;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1958,204,0 chrXII 36610 . G T 703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.865;DP=79;Dels=0.00;FS=1.325;HaplotypeScore=7.3580;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;MQRankSum=2.455;QD=8.90;ReadPosRankSum=3.458;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:10,69:79:63:736,63,0 chrXII 36662 . G A 1898 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=4.2919;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=22.60;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1931,198,0 chrXII 36694 . T C 2354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-1.332;QD=22.42;ReadPosRankSum=1.666;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2387,261,0 chrXII 36777 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.7781;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=22.08;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1711,177,0 chrXII 36792 . T C 1555 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;QD=18.51;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1588,171,0 chrXII 36833 . T G 1673 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.97;MQ0=0;QD=16.40;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1706,189,0 chrXII 36841 . C T 1549 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.24;MQ0=0;QD=16.48;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1582,165,0 chrXII 36842 . C T 1495 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.86;MQ0=0;QD=15.57;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1528,168,0 chrXII 36846 . T A 1676 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;QD=16.76;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1709,180,0 chrXII 36882 . G C 2139 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=19.62;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2172,237,0 chrXII 36936 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=25.24;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3407,354,0 chrXII 36981 . A G 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=3.039;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=0.071;QD=23.86;ReadPosRankSum=2.368;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2920,333,0 chrXII 37014 . C T 1789 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=3.3213;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;QD=18.26;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1822,210,0 chrXII 37015 . T C 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=97;Dels=0.00;FS=3.195;HaplotypeScore=3.3213;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;MQRankSum=0.505;QD=17.69;ReadPosRankSum=1.624;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1749,207,0 chrXII 37050 . T C 1510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=85;Dels=0.00;FS=3.063;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;MQRankSum=-1.064;QD=17.76;ReadPosRankSum=1.607;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,82:85:99:1543,174,0 chrXII 37123 . A C 1921 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.60;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1954,216,0 chrXII 37151 . A G 2184 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.48;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2217,246,0 chrXII 37196 . C T 2513 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=25.91;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,94:97:99:2546,264,0 chrXII 37375 . T A 3072 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.03;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3105,327,0 chrXII 37509 . T C 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=18.9953;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.224;QD=21.90;ReadPosRankSum=1.642;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4271,474,0 chrXII 37705 . T C 4039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=183;Dels=0.00;FS=3.307;HaplotypeScore=15.3743;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=1.561;QD=22.07;ReadPosRankSum=1.694;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4039,438,0 chrXII 37762 . A T 4472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=207;Dels=0.00;FS=2.945;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-1.240;QD=21.60;ReadPosRankSum=2.390;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4472,480,0 chrXII 37937 . C T 3767.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=23.84;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3767,388,0 chrXII 37953 . C T 3508.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3404;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=22.20;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3508,361,0 chrXII 37966 . C T 3360.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.5966;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.74;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3360,354,0 chrXII 38134 . T C 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=3.096;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.170;QD=23.88;ReadPosRankSum=1.709;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3653,399,0 chrXII 38184 . G T 3739.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.22;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3739,391,0 chrXII 38338 . G T 4238.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.23;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4238,456,0 chrXII 38737 . T G 3865.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.9471;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.57;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3865,414,0 chrXII 38936 . A G 4153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=180;Dels=0.00;FS=9.254;HaplotypeScore=14.8068;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.520;QD=23.07;ReadPosRankSum=2.882;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:3,175:180:99:4153,450,0 chrXII 39463 . T C 3038 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.84;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3071,333,0 chrXII 39582 . G A 1404 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1437,150,0 chrXII 40119 . G A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.35;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4067,427,0 chrXII 40359 . A G 4213.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.2379;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=24.93;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4213,459,0 chrXII 40552 . A G 3761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=3.010;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=0.060;QD=21.87;ReadPosRankSum=1.672;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3761,420,0 chrXII 40568 . G T 3571.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=21.01;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3571,378,0 chrXII 40569 . T C 3392.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=19.95;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3392,378,0 chrXII 40883 . C G 3739.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.7451;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.97;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3739,405,0 chrXII 40904 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.30;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3456,375,0 chrXII 40943 . C A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.48;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3358,351,0 chrXII 41106 . T C 1390 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1423,150,0 chrXII 41207 . C T 818 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:93:851,93,0 chrXII 41469 . A G 2488 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2521,285,0 chrXII 41976 . T C 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.763;QD=24.77;ReadPosRankSum=1.659;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3617,384,0 chrXII 42087 . A G 3442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=3.193;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.590;QD=23.42;ReadPosRankSum=1.708;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3442,369,0 chrXII 42243 . A G 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=138;Dels=0.00;FS=3.172;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.302;QD=21.20;ReadPosRankSum=1.707;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2959,324,0 chrXII 42404 . A G 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=3.222;HaplotypeScore=6.5875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.271;QD=24.22;ReadPosRankSum=1.709;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3560,387,0 chrXII 42498 . C A 3383.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3383,354,0 chrXII 42663 . A G 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=157;Dels=0.00;FS=3.020;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.134;QD=23.99;ReadPosRankSum=2.402;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3766,399,0 chrXII 43069 . G A 3086 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.58;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3119,324,0 chrXII 43113 . C T 4318.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=24.82;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4318,451,0 chrXII 43308 . C T 3955.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.6380;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=20.18;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:3955,415,0 chrXII 43316 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=19.22;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3824,408,0 chrXII 43341 . G T 3596.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=19.33;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3596,370,0 chrXII 43361 . C T 3572.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.0404;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=18.32;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3572,375,0 chrXII 43499 . A G 6089.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=11.9126;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.07;SB=-2.973e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:6089,660,0 chrXII 43578 . G A 6592.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=21.6713;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=24.60;SB=-3.508e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6592,685,0 chrXII 43758 . G A 5322.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=16.1858;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.55;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5322,562,0 chrXII 44472 . G A 3637.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=24.25;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3637,390,0 chrXII 44508 . A G 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=137;Dels=0.00;FS=2.966;HaplotypeScore=11.0719;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.063;QD=24.09;ReadPosRankSum=2.377;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3301,360,0 chrXII 44676 . T A 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=0.761;QD=19.11;ReadPosRankSum=1.706;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2555,276,0 chrXII 44682 . A G 2515 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=18.63;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2548,285,0 chrXII 44691 . G A 2500 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=18.52;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2533,273,0 chrXII 44703 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=18.24;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2441,261,0 chrXII 45070 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.359;DP=158;Dels=0.00;FS=9.182;HaplotypeScore=5.4869;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.655;QD=24.75;ReadPosRankSum=3.359;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:4,154:158:99:3911,420,0 chrXII 45294 . T C 3123 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3156,345,0 chrXII 46479 . T G 2325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.927;DP=99;Dels=0.00;FS=3.424;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;MQRankSum=1.382;QD=23.48;ReadPosRankSum=-1.137;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2358,255,0 chrXII 46645 . A G 1548 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=21.21;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1581,171,0 chrXII 47080 . C T 1458 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.5681;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.76;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1491,156,0 chrXII 47109 . T A 1649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=73;Dels=0.00;FS=3.949;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.588;QD=22.59;ReadPosRankSum=1.684;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1682,177,0 chrXII 47204 . C T 2705 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2738,282,0 chrXII 47422 . T C 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=104;Dels=0.00;FS=7.854;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.514;QD=21.14;ReadPosRankSum=2.378;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:2,101:104:99:2232,240,0 chrXII 47469 . A C 2804 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.17;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2837,306,0 chrXII 47526 . C T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=24.00;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3312,342,0 chrXII 47649 . T C 1952 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.22;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1985,219,0 chrXII 47654 . T C 1906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=92;Dels=0.00;FS=3.054;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=1.908;QD=20.72;ReadPosRankSum=2.396;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:2,89:92:99:1939,210,0 chrXII 47928 . G A 5152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.1603;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;MQRankSum=0.309;QD=25.01;ReadPosRankSum=-1.595;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:5152,550,0 chrXII 48092 . T C 6498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=17.7470;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.520;QD=23.12;ReadPosRankSum=1.658;SB=-3.642e+03 GT:AD:DP:GQ:PL 1/1:1,280:281:99:6498,709,0 chrXII 48264 . C G 6068.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=12.7087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-3.402e+03 GT:AD:DP:GQ:PL 1/1:0,259:262:99:6068,652,0 chrXII 48757 . G A 2128 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3495;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.46;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2161,234,0 chrXII 48820 . T A 746 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.9101;MLEAC=2;MLEAF=1.00;MQ=41.35;MQ0=0;QD=13.81;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:81:779,81,0 chrXII 48832 . T G 685 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.7318;MLEAC=2;MLEAF=1.00;MQ=35.51;MQ0=0;QD=14.89;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:78:718,78,0 chrXII 48833 . T A 664 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.7318;MLEAC=2;MLEAF=1.00;MQ=33.98;MQ0=0;QD=15.09;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:72:697,72,0 chrXII 48847 . T C 484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=51.1728;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.315;QD=11.00;ReadPosRankSum=-0.472;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:57:517,57,0 chrXII 48923 . G C 2652 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.86;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2685,297,0 chrXII 49068 . C T 2853 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=22.29;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2886,306,0 chrXII 49074 . T C 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=140;Dels=0.00;FS=2.590;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;MQRankSum=-0.374;QD=20.24;ReadPosRankSum=2.907;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:2867,309,0 chrXII 49214 . A G 4109.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.1621;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.96;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4109,468,0 chrXII 49346 . T C 4365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.623;DP=194;Dels=0.00;FS=12.040;HaplotypeScore=15.6281;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.105;QD=22.50;ReadPosRankSum=3.760;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:5,189:194:99:4365,489,0 chrXII 49413 . G A 6019.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=8.8881;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=25.29;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:6019,628,0 chrXII 49452 . G A 5268.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=3.1490;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=23.84;SB=-2.952e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5268,550,0 chrXII 49459 . A G 4790.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.18;SB=-2.781e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4790,511,0 chrXII 49545 . T C 4587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=211;Dels=0.00;FS=3.286;HaplotypeScore=9.6221;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.287;QD=21.74;ReadPosRankSum=1.666;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4587,493,0 chrXII 49638 . T C 4790.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.5626;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.14;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4790,537,0 chrXII 49831 . T A 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=6.309;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.694;QD=22.31;ReadPosRankSum=2.391;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3771,405,0 chrXII 50096 . T C 3705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.342;DP=204;Dels=0.00;FS=42.312;HaplotypeScore=194.2780;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=3.892;QD=18.16;ReadPosRankSum=3.631;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:25,179:204:99:3705,203,0 chrXII 50143 . A T 5493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=248;Dels=0.00;FS=9.131;HaplotypeScore=16.4387;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.104;QD=22.15;ReadPosRankSum=2.331;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:2,246:248:99:5493,574,0 chrXII 50192 . A G 5791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=241;Dels=0.00;FS=10.070;HaplotypeScore=19.7575;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;MQRankSum=-2.295;QD=24.03;ReadPosRankSum=2.419;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:2,236:241:99:5791,628,0 chrXII 50256 . A G 4514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=3.245;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.091;QD=23.27;ReadPosRankSum=1.677;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:1,190:194:99:4514,483,0 chrXII 50287 . G A 5355.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.6952;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.68;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:5355,556,0 chrXII 50531 . C T 5671.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=21.40;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:5671,618,0 chrXII 50744 . C T 4845.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=21.34;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4845,505,0 chrXII 50753 . T A 4520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=214;Dels=0.00;FS=2.816;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=1.015;QD=21.12;ReadPosRankSum=2.335;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:4520,472,0 chrXII 50774 . T A 4201.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=18.92;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4201,465,0 chrXII 50819 . C T 3859.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.10;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3859,400,0 chrXII 50921 . G A 4657.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.8170;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.86;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4657,516,0 chrXII 50984 . T C 4106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=195;Dels=0.00;FS=8.648;HaplotypeScore=15.1080;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.449;QD=21.06;ReadPosRankSum=2.412;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:4106,444,0 chrXII 51035 . C G 4125.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.15;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4125,459,0 chrXII 51069 . T C 4829.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=15.7308;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.15;SB=-2.585e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4829,519,0 chrXII 51125 . A G 4852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=222;Dels=0.00;FS=12.322;HaplotypeScore=15.0629;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.066;QD=21.86;ReadPosRankSum=3.421;SB=-2.786e+03 GT:AD:DP:GQ:PL 1/1:4,216:222:99:4852,537,0 chrXII 51284 . G A 4907.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=17.6961;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.29;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4907,514,0 chrXII 51489 . A G 4034.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.7288;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.92;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4034,438,0 chrXII 51794 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=23.28;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2664,276,0 chrXII 51800 . A G 2207 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.63;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2240,246,0 chrXII 51952 . A G 2480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-1.809;QD=20.84;ReadPosRankSum=2.408;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2513,279,0 chrXII 51956 . A G 2388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-1.482;QD=21.51;ReadPosRankSum=1.701;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2421,267,0 chrXII 52186 . T C 3731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.153;QD=27.43;ReadPosRankSum=1.707;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3731,402,0 chrXII 52473 . A G 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=118;Dels=0.00;FS=2.986;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=47.71;MQ0=0;MQRankSum=-1.282;QD=22.10;ReadPosRankSum=2.408;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2641,282,0 chrXII 52489 . T C 2183 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=20.03;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2216,243,0 chrXII 52504 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=19.14;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1870,198,0 chrXII 52531 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=17.77;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1455,153,0 chrXII 52599 . A G 942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=43.6442;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;MQRankSum=-1.547;QD=16.53;ReadPosRankSum=1.670;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:975,105,0 chrXII 52657 . T A 1008 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;QD=13.09;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1041,111,0 chrXII 52676 . A T 1337 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=16.71;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1370,144,0 chrXII 52701 . G A 1478 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=20.82;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1511,159,0 chrXII 52714 . G C 1395 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=18.85;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1428,156,0 chrXII 53075 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=21.87;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3324,340,0 chrXII 53089 . G A 3167 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.79;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3200,333,0 chrXII 53554 . G A 4640.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.28;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4640,498,0 chrXII 53575 . G A 4267.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.32;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4267,462,0 chrXII 53920 . C T 4510.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.2433;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.79;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4510,486,0 chrXII 54071 . A T 5248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=204;Dels=0.00;FS=3.759;HaplotypeScore=14.0361;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.509;QD=25.73;ReadPosRankSum=1.715;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:5248,550,0 chrXII 54226 . A G 5586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.334;DP=262;Dels=0.00;FS=14.453;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.345;QD=21.32;ReadPosRankSum=3.427;SB=-2.915e+03 GT:AD:DP:GQ:PL 1/1:4,256:262:99:5586,627,0 chrXII 54244 . T C 6322.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.24;SB=-3.172e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:6322,679,0 chrXII 54357 . A G 6157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=269;Dels=0.00;FS=4.691;HaplotypeScore=24.2161;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.202;QD=22.89;ReadPosRankSum=1.680;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:1,267:269:99:6157,667,0 chrXII 54748 . G A 7291.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=23.4592;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.43;SB=-3.248e+03 GT:AD:DP:GQ:PL 1/1:0,325:325:99:7291,772,0 chrXII 55033 . C T 4725.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.5952;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.54;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4725,484,0 chrXII 55090 . A G 4096.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:4096,450,0 chrXII 55390 . G A 2784 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2817,300,0 chrXII 55507 . G A 3477.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.88;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3477,361,0 chrXII 55528 . G A 3431.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.14;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3431,355,0 chrXII 56262 . T G 4409.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.21;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4409,477,0 chrXII 56536 . G A 2848 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.55;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2881,297,0 chrXII 56722 . C G 3620.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.55;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3620,393,0 chrXII 56781 . G T 3039 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3072,336,0 chrXII 57730 . T C 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=156;Dels=0.00;FS=2.933;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.630;QD=23.37;ReadPosRankSum=2.306;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3645,387,0 chrXII 57868 . C T 3775.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3775,396,0 chrXII 58212 . T C 4243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.371;DP=181;Dels=0.00;FS=12.390;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=2.773;QD=23.44;ReadPosRankSum=3.352;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:4,175:181:99:4243,459,0 chrXII 58510 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.9978;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.01;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3498,375,0 chrXII 59265 . C T 2694 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.64;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2727,291,0 chrXII 59908 . C T 3401.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.95;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3401,352,0 chrXII 60657 . G A 3564.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.5820;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=25.10;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3564,367,0 chrXII 60670 . C A 3054 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.81;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3087,324,0 chrXII 60852 . G A 2791 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=24.70;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2824,288,0 chrXII 60873 . C T 2813 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=23.44;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2846,297,0 chrXII 61099 . A G 2760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.133;QD=23.39;ReadPosRankSum=1.703;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2793,312,0 chrXII 61294 . G A 3631.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=25.94;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3631,373,0 chrXII 61318 . A G 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=4.572;HaplotypeScore=7.3768;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.337;QD=23.63;ReadPosRankSum=1.686;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3545,390,0 chrXII 61657 . G T 5107.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.21;SB=-2.873e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5107,538,0 chrXII 61696 . G A 5325.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=17.8624;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.54;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5325,550,0 chrXII 61898 . G A 3753.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.21;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3753,405,0 chrXII 61924 . A G 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.599;DP=171;Dels=0.00;FS=10.846;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.133;QD=22.21;ReadPosRankSum=3.782;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:5,166:171:99:3798,414,0 chrXII 62094 . A G 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.637;DP=150;Dels=0.00;FS=9.393;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.815;QD=21.87;ReadPosRankSum=2.911;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:3,144:150:99:3281,357,0 chrXII 62349 . T A 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.814;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-1.610;QD=21.07;ReadPosRankSum=1.586;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3025,312,0 chrXII 62362 . A G 2871 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.51;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2904,312,0 chrXII 62644 . T G 2691 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.20;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2724,300,0 chrXII 63076 . T C 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.753;DP=118;Dels=0.00;FS=2.597;HaplotypeScore=12.0949;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.667;QD=23.58;ReadPosRankSum=2.924;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2816,306,0 chrXII 63445 . C T 3438.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3438,360,0 chrXII 63559 . G A 3681.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=24.22;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3681,396,0 chrXII 63793 . A T 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=127;Dels=0.00;FS=2.935;HaplotypeScore=98.1613;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=-0.751;QD=20.64;ReadPosRankSum=2.391;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2654,279,0 chrXII 63798 . G T 2413 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=102.1272;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=20.45;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2446,255,0 chrXII 63859 . C G 2039 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.61;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2072,222,0 chrXII 64089 . A G 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=6.221;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;MQRankSum=-1.732;QD=23.82;ReadPosRankSum=1.710;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3740,423,0 chrXII 64152 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=22.32;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3068,318,0 chrXII 64164 . A G 3090 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.88;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3123,339,0 chrXII 64212 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.1899;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.44;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3366,354,0 chrXII 64284 . A G 4581.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.4200;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=23.37;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4581,507,0 chrXII 64614 . A G 4171.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=3.545;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=-0.638;QD=21.84;ReadPosRankSum=1.714;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4171,462,0 chrXII 64620 . A G 4292.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=21.90;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4292,468,0 chrXII 64683 . G A 4979.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.9747;MLEAC=2;MLEAF=1.00;MQ=40.79;MQ0=0;QD=23.16;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4979,523,0 chrXII 64763 . G A 6617.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=16.7568;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=0;QD=26.05;SB=-2.999e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:6617,685,0 chrXII 64824 . A G 6592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=320;Dels=0.00;FS=4.981;HaplotypeScore=24.4379;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.926;QD=20.60;ReadPosRankSum=1.721;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:1,317:320:99:6592,732,0 chrXII 64866 . C T 7718.01 filter AC=2;AF=1.00;AN=2;DP=420;Dels=0.00;FS=0.000;HaplotypeScore=19.9818;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=18.38;SB=-3.368e+03 GT:AD:DP:GQ:PL 1/1:0,419:420:99:7718,811,0 chrXII 65115 . T C 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.395;DP=348;Dels=0.00;FS=85.116;HaplotypeScore=24.4250;MLEAC=1;MLEAF=0.500;MQ=50.30;MQ0=0;MQRankSum=-7.746;QD=0.09;ReadPosRankSum=-1.042;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:252,92:348:61:61,0,4576 chrXII 65118 . A G 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.852;DP=335;Dels=0.00;FS=92.856;HaplotypeScore=15.0703;MLEAC=1;MLEAF=0.500;MQ=50.46;MQ0=0;MQRankSum=-9.873;QD=0.09;ReadPosRankSum=-1.132;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:250,85:335:60:60,0,4527 chrXII 65254 . G T 4728.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.64;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4728,496,0 chrXII 65485 . C T 1997 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.5318;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=19.39;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2030,228,0 chrXII 65517 . T C 1448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;MQRankSum=-0.038;QD=15.91;ReadPosRankSum=1.617;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1481,168,0 chrXII 65523 . A T 1328 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=14.13;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1361,147,0 chrXII 65695 . C A 4075.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=25.63;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4075,429,0 chrXII 65728 . G A 3560.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=23.12;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3560,390,0 chrXII 65772 . A G 3016 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.02;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,127:131:99:3049,330,0 chrXII 65992 . C T 4952.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=15.1878;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.51;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4952,517,0 chrXII 66267 . T C 4946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=226;Dels=0.00;FS=3.030;HaplotypeScore=12.9223;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.082;QD=21.88;ReadPosRankSum=2.384;SB=-2.752e+03 GT:AD:DP:GQ:PL 1/1:2,222:226:99:4946,540,0 chrXII 66595 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=22.1765;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=1.284;QD=16.75;ReadPosRankSum=2.375;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:3366,366,0 chrXII 66714 . T C 4596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=16.0560;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.314;QD=22.98;ReadPosRankSum=1.715;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4596,516,0 chrXII 66854 . T G 5209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=237;Dels=0.00;FS=3.494;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.498;QD=21.98;ReadPosRankSum=1.703;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:5209,576,0 chrXII 66992 . C G 6179.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=16.7902;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.06;SB=-3.150e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:6179,675,0 chrXII 67183 . G A 6310.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=17.3099;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.36;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:6310,649,0 chrXII 67247 . A G 4081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.517;QD=23.59;ReadPosRankSum=1.692;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:4081,444,0 chrXII 67568 . G A 2971 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.35;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3004,315,0 chrXII 67604 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.36;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3228,331,0 chrXII 67710 . A T 3355.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.67;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3355,346,0 chrXII 67742 . G A 3356.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.23;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3356,348,0 chrXII 67824 . C A 3121 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.38;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3154,325,0 chrXII 67863 . C T 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.475;DP=166;Dels=0.00;FS=3.770;HaplotypeScore=19.5680;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.711;QD=23.51;ReadPosRankSum=0.556;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,162:166:99:3902,414,0 chrXII 67932 . G T 4792.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.70;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4792,496,0 chrXII 68071 . T C 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=168;Dels=0.00;FS=3.750;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.292;QD=23.93;ReadPosRankSum=1.711;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:4020,441,0 chrXII 68253 . G A 3769.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=23.12;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3769,388,0 chrXII 68271 . C T 3164 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3499;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.52;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3197,333,0 chrXII 68368 . T A 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=141;Dels=0.00;FS=3.004;HaplotypeScore=14.1754;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.451;QD=22.62;ReadPosRankSum=2.344;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3223,336,0 chrXII 68671 . A G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.3884;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=0.668;QD=20.50;ReadPosRankSum=1.658;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2903,312,0 chrXII 68685 . C T 2478 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=20.15;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2511,264,0 chrXII 68686 . C T 2425 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.7267;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=19.56;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2458,267,0 chrXII 68756 . C T 3939.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.64;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3939,409,0 chrXII 69006 . T A 2944 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.5895;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.52;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2977,330,0 chrXII 69012 . A C 2656 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=17.95;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2689,291,0 chrXII 69040 . G A 2806 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=17.21;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:2839,297,0 chrXII 69078 . G A 3136 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=19.24;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3169,330,0 chrXII 69090 . A G 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=173;Dels=0.00;FS=6.899;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-0.593;QD=18.64;ReadPosRankSum=2.421;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:3258,354,0 chrXII 69221 . A G 4521.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=15.9716;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=25.54;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4521,486,0 chrXII 69488 . C T 2725 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5594;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.98;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2758,285,0 chrXII 69497 . T C 2381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=119;Dels=0.00;FS=2.695;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.990;QD=20.01;ReadPosRankSum=2.408;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2414,258,0 chrXII 69530 . C T 2187 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.25;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2220,231,0 chrXII 69552 . G C 2111 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=18.20;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2144,231,0 chrXII 70044 . G A 3705.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=24.70;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3705,385,0 chrXII 70056 . C G 3532.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=23.39;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3532,384,0 chrXII 70065 . A C 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.149;QD=21.72;ReadPosRankSum=0.952;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3302,360,0 chrXII 70244 . C T 4187.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.06;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4187,433,0 chrXII 70524 . T G 2197 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.19;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2230,240,0 chrXII 70541 . A T 1873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.775;DP=96;Dels=0.00;FS=2.533;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-0.172;QD=19.51;ReadPosRankSum=2.925;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:3,93:96:99:1906,207,0 chrXII 70613 . C T 2165 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.60;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2198,228,0 chrXII 70654 . A G 1949 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.90;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1982,225,0 chrXII 71063 . C G 4653.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=17.2895;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.98;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4653,507,0 chrXII 71524 . A G 4233.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=16.2881;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.26;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,177:182:99:4233,468,0 chrXII 71641 . C G 4051.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.0104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4051,441,0 chrXII 71722 . A G 4856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=3.424;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.483;QD=23.23;ReadPosRankSum=1.699;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4856,517,0 chrXII 72088 . C G 3825.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.00;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3825,414,0 chrXII 72448 . G A 3690.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.52;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3690,411,0 chrXII 72460 . C T 3965.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=21.32;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3965,415,0 chrXII 72502 . T C 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=189;Dels=0.00;FS=3.688;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=0.843;QD=19.62;ReadPosRankSum=1.677;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:3708,414,0 chrXII 72514 . A G 4100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.478;QD=19.52;ReadPosRankSum=1.699;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4100,453,0 chrXII 72811 . A C 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=1.048;QD=21.54;ReadPosRankSum=1.664;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3296,351,0 chrXII 72877 . A G 3438.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=22.18;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3438,387,0 chrXII 72975 . T C 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.735;DP=133;Dels=0.00;FS=6.083;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.083;QD=20.22;ReadPosRankSum=2.887;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2722,294,0 chrXII 72987 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.47;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2796,291,0 chrXII 73178 . C T 4746.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.8601;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=25.79;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4746,496,0 chrXII 73290 . C A 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.4127;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.600;QD=23.82;ReadPosRankSum=1.619;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,154:159:99:3788,391,0 chrXII 73717 . T G 4029.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.89;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4029,435,0 chrXII 73852 . G A 4240.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4240,445,0 chrXII 74146 . G T 2785 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=103.9529;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=23.02;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2818,294,0 chrXII 74214 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.44;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3085,324,0 chrXII 74238 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=4.085;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=1.115;QD=22.40;ReadPosRankSum=1.708;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3270,354,0 chrXII 74258 . C T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.55;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3743,388,0 chrXII 74294 . A G 4098.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=20.70;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,194:198:99:4098,447,0 chrXII 74641 . T C 2019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.981;QD=24.33;ReadPosRankSum=1.690;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:2052,225,0 chrXII 74681 . A G 2662 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=25.35;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2695,297,0 chrXII 74849 . C T 3339.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.35;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3339,360,0 chrXII 74872 . C T 3487.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=24.05;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3487,369,0 chrXII 75002 . A G 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=118;Dels=0.00;FS=6.208;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.198;QD=24.46;ReadPosRankSum=2.408;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2919,315,0 chrXII 75086 . A C 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=132;Dels=0.00;FS=2.886;HaplotypeScore=9.0742;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.573;QD=24.25;ReadPosRankSum=2.393;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:3234,345,0 chrXII 75143 . A G 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.707;QD=24.22;ReadPosRankSum=1.677;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:3085,333,0 chrXII 75216 . T C 3047 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.57;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3080,330,0 chrXII 75434 . A C 3602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=149;Dels=0.00;FS=6.721;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.421;QD=24.17;ReadPosRankSum=2.384;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3602,384,0 chrXII 75903 . C T 2779 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2812,294,0 chrXII 76022 . A G 3483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=3.155;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;MQRankSum=1.709;QD=22.76;ReadPosRankSum=1.687;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3483,387,0 chrXII 76057 . G A 4030.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8088;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4030,418,0 chrXII 76433 . T A 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=130;Dels=0.00;FS=4.237;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.199;QD=23.15;ReadPosRankSum=1.705;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3043,318,0 chrXII 76517 . T C 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=4.127;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.023;QD=23.86;ReadPosRankSum=1.640;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3579,393,0 chrXII 76603 . G T 3077 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.85;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:3110,322,0 chrXII 76688 . G A 3342.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.94;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3342,345,0 chrXII 76840 . T C 2577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=5.138;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.671;QD=23.22;ReadPosRankSum=1.701;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2610,285,0 chrXII 76842 . G A 2701 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.12;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2734,282,0 chrXII 77139 . G A 801 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=22.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:36:87:834,87,0 chrXII 77520 . C T 4284.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.9065;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.91;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,168:172:99:4284,436,0 chrXII 77626 . A G 3859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=18.5437;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.976;QD=20.86;ReadPosRankSum=2.423;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3859,423,0 chrXII 77743 . A C 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=107;Dels=0.00;FS=2.859;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.722;QD=23.29;ReadPosRankSum=2.402;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:2,102:107:99:2525,279,0 chrXII 78276 . G A 4021.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=25.94;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4021,415,0 chrXII 78559 . T C 4244.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.45;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4244,462,0 chrXII 78574 . A C 3714.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.65;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3714,411,0 chrXII 78868 . G A 3048 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.27;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3081,324,0 chrXII 79063 . G A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3721,411,0 chrXII 79336 . G A 5899.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-2.881e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5899,604,0 chrXII 79411 . T C 5545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=232;Dels=0.00;FS=5.366;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.052;QD=23.90;ReadPosRankSum=2.892;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:3,229:232:99:5545,603,0 chrXII 79441 . G C 5849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=259;Dels=0.00;FS=3.920;HaplotypeScore=7.8431;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.027;QD=22.58;ReadPosRankSum=1.678;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:1,253:259:99:5849,634,0 chrXII 79465 . A G 6037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=285;Dels=0.00;FS=7.462;HaplotypeScore=8.5866;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=0.022;QD=21.18;ReadPosRankSum=2.372;SB=-3.208e+03 GT:AD:DP:GQ:PL 1/1:2,283:285:99:6037,675,0 chrXII 79618 . C T 6744.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=11.3793;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.09;SB=-3.548e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:6744,724,0 chrXII 79672 . G A 5825.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=18.1784;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.93;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5825,610,0 chrXII 79798 . G C 4683.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.4607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4683,525,0 chrXII 79987 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=15.2131;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.83;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2129,222,0 chrXII 80269 . C T 2960 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=24.87;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2993,312,0 chrXII 80295 . T A 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;MQRankSum=0.363;QD=24.16;ReadPosRankSum=1.678;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3198,330,0 chrXII 80486 . A G 2210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=96.7884;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=0;MQRankSum=1.383;QD=19.91;ReadPosRankSum=0.493;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2243,249,0 chrXII 80488 . G A 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=97.0280;MLEAC=2;MLEAF=1.00;MQ=42.67;MQ0=0;MQRankSum=-0.441;QD=20.30;ReadPosRankSum=0.504;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2286,243,0 chrXII 80510 . A G 2110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;MQRankSum=1.383;QD=19.36;ReadPosRankSum=1.700;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2143,231,0 chrXII 80532 . T C 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=100;Dels=0.00;FS=3.724;HaplotypeScore=3.5075;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;MQRankSum=-0.628;QD=16.39;ReadPosRankSum=2.401;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1672,165,0 chrXII 80663 . C A 1659 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=21.00;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1692,186,0 chrXII 80686 . T C 1194 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=17.82;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1227,138,0 chrXII 80695 . C T 1143 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=16.57;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1176,126,0 chrXII 80723 . G A 807 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=15.23;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:96:840,96,0 chrXII 80746 . A G 734 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;QD=13.35;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:87:767,87,0 chrXII 80755 . T C 815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;MQRankSum=0.533;QD=15.67;ReadPosRankSum=1.666;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:96:848,96,0 chrXII 80794 . T A 1390 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;QD=17.59;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1423,150,0 chrXII 80805 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=42.01;MQ0=0;QD=14.41;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1272,141,0 chrXII 80818 . A G 1265 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=14.71;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1298,144,0 chrXII 80822 . G C 1332 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=14.64;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1365,153,0 chrXII 80880 . T G 1301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=3.274;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=0.459;QD=18.86;ReadPosRankSum=1.681;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1334,144,0 chrXII 80907 . C T 1539 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=23.68;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1572,171,0 chrXII 81004 . A G 1448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;MQRankSum=-0.188;QD=20.11;ReadPosRankSum=2.381;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1481,168,0 chrXII 81010 . C T 1514 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.9258;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;QD=21.32;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1547,171,0 chrXII 81024 . C T 1229 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=40.99;MQ0=0;QD=17.81;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1262,144,0 chrXII 81061 . C T 1395 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=20.51;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1428,159,0 chrXII 81096 . G A 1975 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=26.33;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:2008,207,0 chrXII 81172 . T G 1911 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=21.47;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1944,219,0 chrXII 81190 . T C 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=71.9546;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.907;QD=20.43;ReadPosRankSum=1.650;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1749,192,0 chrXII 81305 . A G 2280 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.5548;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.14;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2313,258,0 chrXII 81874 . A C 6382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=269;Dels=0.00;FS=5.875;HaplotypeScore=12.9322;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.198;QD=23.72;ReadPosRankSum=2.967;SB=-3.227e+03 GT:AD:DP:GQ:PL 1/1:3,266:269:99:6382,696,0 chrXII 82033 . A G 4846.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.3084;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.47;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4846,522,0 chrXII 82171 . A G 3960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=174;Dels=0.00;FS=2.859;HaplotypeScore=14.1998;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.178;QD=22.76;ReadPosRankSum=2.364;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3960,432,0 chrXII 82255 . C T 4414.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.37;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4414,463,0 chrXII 82288 . T C 3714.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.21;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3714,408,0 chrXII 82321 . C T 3143 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.45;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3176,330,0 chrXII 82385 . C T 4220.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4818;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=25.42;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4220,436,0 chrXII 82618 . A G 4852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=204;Dels=0.00;FS=3.841;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.939;QD=23.78;ReadPosRankSum=1.715;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:1,200:204:99:4852,519,0 chrXII 82757 . A G 4122.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.9592;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.65;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4122,450,0 chrXII 82792 . A G 4414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.637;QD=22.87;ReadPosRankSum=1.660;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4414,489,0 chrXII 83008 . C G 2820 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.43;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2853,318,0 chrXII 83158 . A G 3136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=149;Dels=0.00;FS=7.051;HaplotypeScore=19.2699;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.536;QD=21.05;ReadPosRankSum=2.416;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3169,354,0 chrXII 83227 . C T 4102.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=24.42;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4102,430,0 chrXII 83245 . T C 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.968;DP=177;Dels=0.00;FS=10.116;HaplotypeScore=6.3330;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=1.001;QD=17.11;ReadPosRankSum=3.644;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:6,171:177:99:3062,351,0 chrXII 83248 . C T 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.880;DP=178;Dels=0.00;FS=7.781;HaplotypeScore=10.4320;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=0.185;QD=17.31;ReadPosRankSum=2.597;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:5,173:178:99:3115,351,0 chrXII 83311 . A G 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=3.688;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=1.106;QD=18.98;ReadPosRankSum=1.690;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3184,354,0 chrXII 83505 . C T 5147.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.0043;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=24.75;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:5147,535,0 chrXII 83524 . C T 4672.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=24.59;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4672,487,0 chrXII 83596 . A G 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=173;Dels=0.00;FS=2.839;HaplotypeScore=11.8694;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.149;QD=23.16;ReadPosRankSum=2.421;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4007,435,0 chrXII 84031 . C T 2361 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.27;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2394,264,0 chrXII 84147 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=23.53;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2809,303,0 chrXII 84326 . C A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.667;DP=106;Dels=0.00;FS=9.253;HaplotypeScore=98.1694;MLEAC=2;MLEAF=1.00;MQ=35.47;MQ0=0;MQRankSum=-2.752;QD=0.20;ReadPosRankSum=2.608;SB=-2.148e+02 GT:AD:DP:GQ:PL 1/1:74,30:106:6:52,6,0 chrXII 84328 . C A 35.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=8.054;DP=111;Dels=0.00;FS=3.994;HaplotypeScore=109.0528;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;MQRankSum=-2.113;QD=0.32;ReadPosRankSum=3.562;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:73,38:111:9:68,9,0 chrXII 84397 . G C 2595 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=18.67;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2628,288,0 chrXII 84451 . A G 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-1.248;QD=21.02;ReadPosRankSum=1.708;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3039,327,0 chrXII 84504 . G A 2583 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=20.18;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2616,288,0 chrXII 84629 . A G 1908 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=21.20;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1941,216,0 chrXII 84631 . T C 1962 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=21.56;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1995,216,0 chrXII 84846 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.2434;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=20.74;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3547,366,0 chrXII 84849 . C T 3581.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=21.97;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3581,370,0 chrXII 84883 . T C 3564.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=20.14;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3564,384,0 chrXII 85050 . A C 4436.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.0820;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=19.80;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,219:224:99:4436,492,0 chrXII 85270 . C G 5163.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.33;SB=-3.045e+03 GT:AD:DP:GQ:PL 1/1:0,238:242:99:5163,573,0 chrXII 85385 . G A 4605.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.7062;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=24.37;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4605,481,0 chrXII 85415 . T G 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.052;DP=176;Dels=0.00;FS=2.332;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.370;QD=21.58;ReadPosRankSum=2.162;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:3,171:176:99:3798,405,0 chrXII 85446 . C T 4388.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.9110;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.97;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4388,460,0 chrXII 85565 . C A 3428.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.4708;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.26;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3428,363,0 chrXII 85580 . G A 3045 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=16.3157;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=15.38;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:3078,330,0 chrXII 85632 . T G 3277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=15.7311;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.758;QD=17.52;ReadPosRankSum=1.713;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:3277,363,0 chrXII 85916 . T C 6172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.789;QD=24.02;ReadPosRankSum=1.692;SB=-3.228e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:6172,678,0 chrXII 85972 . A G 5337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.277;DP=232;Dels=0.00;FS=12.469;HaplotypeScore=14.3283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.640;QD=23.00;ReadPosRankSum=3.330;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:4,225:232:99:5337,585,0 chrXII 87208 . G T 3160 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3193,345,0 chrXII 87286 . C T 2641 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.37;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2674,282,0 chrXII 87340 . A G 2696 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.07;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2729,294,0 chrXII 88069 . A G 4217.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.451;QD=22.31;ReadPosRankSum=2.423;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4217,450,0 chrXII 89329 . C T 5948.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=19.0134;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5948,616,0 chrXII 90214 . C T 6490.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=15.8924;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.87;SB=-3.365e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:6490,673,0 chrXII 90629 . C G 3539.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=18.9222;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.45;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3539,387,0 chrXII 90764 . G A 4564.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.7505;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.26;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4564,478,0 chrXII 91022 . A G 4289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=179;Dels=0.00;FS=3.473;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.148;QD=23.96;ReadPosRankSum=1.674;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4289,468,0 chrXII 91268 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.46;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3308,354,0 chrXII 91389 . T C 1007 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.38;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1040,111,0 chrXII 91461 . A C 1315 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.07;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1348,150,0 chrXII 91483 . T C 1480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.879;QD=22.77;ReadPosRankSum=1.679;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1513,168,0 chrXII 91644 . A G 2724 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.54;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2757,294,0 chrXII 92974 . A G 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=23.68;ReadPosRankSum=1.707;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3291,363,0 chrXII 93488 . G A 3271.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.16;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3271,342,0 chrXII 93654 . G A 3398.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.43;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3398,354,0 chrXII 94044 . C T 4776.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=17.7354;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4776,496,0 chrXII 94172 . A G 4107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.5981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.262;QD=23.20;ReadPosRankSum=1.693;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4107,456,0 chrXII 94920 . C T 7095.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=11.8077;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;QD=25.25;SB=-3.767e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:7095,745,0 chrXII 95081 . C T 2576 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=19.82;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2609,267,0 chrXII 95188 . C T 2559 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=22.06;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,112:116:99:2592,273,0 chrXII 95356 . A G 82.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=13.75;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:115,12,0 chrXII 95395 . T C 29.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=5.95;SB=-2.880e+01 GT:AD:DP:GQ:PL 1/1:1,4:5:6:61,6,0 chrXII 95641 . T A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=26.78;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3749,393,0 chrXII 95674 . T C 3107 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=1;QD=23.19;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3140,339,0 chrXII 95935 . A G 2112 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=23.22;MQ0=64;QD=10.78;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:48,148:196:99:2145,237,0 chrXII 95937 . C A 2166 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=23.10;MQ0=64;QD=11.16;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:48,146:194:99:2199,237,0 chrXII 95938 . A G 2066 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.8960;MLEAC=2;MLEAF=1.00;MQ=23.08;MQ0=63;QD=10.76;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:47,145:192:99:2099,234,0 chrXII 95944 . C T 1818 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.8960;MLEAC=2;MLEAF=1.00;MQ=23.94;MQ0=58;MQRankSum=-0.090;QD=8.58;ReadPosRankSum=1.710;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:45,167:212:99:1851,222,0 chrXII 95945 . T C 1806 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=23.97;MQ0=58;MQRankSum=1.276;QD=8.48;ReadPosRankSum=2.418;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:46,167:213:99:1839,222,0 chrXII 95992 . G A 2563 filter AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=17;QD=11.10;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:15,215:231:99:2596,279,0 chrXII 96004 . C T 2579 filter AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=26.90;MQ0=11;QD=11.94;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:11,205:216:99:2612,273,0 chrXII 96010 . A G 2388 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=210;Dels=0.00;FS=3.007;HaplotypeScore=3.0889;MLEAC=2;MLEAF=1.00;MQ=26.99;MQ0=11;MQRankSum=-1.179;QD=11.37;ReadPosRankSum=2.425;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:13,197:210:99:2421,267,0 chrXII 96022 . G A 2214 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=11;QD=11.41;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:9,184:194:99:2247,237,0 chrXII 96025 . G A 2354 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.90;MQ0=15;QD=12.20;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:12,181:193:99:2387,249,0 chrXII 96028 . G A 2354 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.77;MQ0=16;QD=12.46;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:13,176:189:99:2387,249,0 chrXII 96034 . A G 2141 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=180;Dels=0.00;FS=3.013;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.36;MQ0=20;MQRankSum=0.505;QD=11.89;ReadPosRankSum=2.418;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:17,162:180:99:2174,237,0 chrXII 96040 . A G 2038 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=26;MQRankSum=-1.547;QD=11.45;ReadPosRankSum=1.709;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:20,157:178:99:2071,222,0 chrXII 96151 . G A 2250 filter AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=20.86;MQ0=78;QD=12.30;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:53,130:183:99:2283,255,0 chrXII 96166 . A G 2649 filter AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.11;MQ0=44;QD=15.58;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:32,137:170:99:2682,303,0 chrXII 96169 . G A 2760 filter AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=35;QD=16.24;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:26,144:170:99:2793,306,0 chrXII 96229 . A G 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.658;DP=157;Dels=0.00;FS=12.014;HaplotypeScore=16.2324;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=2;MQRankSum=0.344;QD=22.02;ReadPosRankSum=3.217;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:5,151:157:99:3457,378,0 chrXII 96400 . T A 1190 filter AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=18.62;MQ0=99;QD=6.80;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,175:175:99:1223,129,0 chrXII 96451 . T C 1708 filter AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=20.53;MQ0=75;QD=9.13;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:1,186:187:99:1741,189,0 chrXII 96472 . G A 1306 filter AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.30;MQ0=59;QD=8.71;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:1339,144,0 chrXII 96514 . A G 186.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=79;Dels=0.00;FS=7.899;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=15.59;MQ0=44;MQRankSum=-1.500;QD=2.35;ReadPosRankSum=2.306;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:2,76:79:24:219,24,0 chrXII 96580 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=2.83;MQ0=146;QD=0.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,149:149:6:53,6,0 chrXII 97099 . G A 2311.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.112;DP=350;Dels=0.00;FS=400.454;HaplotypeScore=37.8020;MLEAC=1;MLEAF=0.500;MQ=33.59;MQ0=8;MQRankSum=12.310;QD=6.60;ReadPosRankSum=-3.577;SB=-8.880e+02 GT:AD:DP:GQ:PL 0/1:177,173:350:99:2341,0,2647 chrXII 97108 . C T 1714.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.469;DP=313;Dels=0.00;FS=470.704;HaplotypeScore=18.0302;MLEAC=1;MLEAF=0.500;MQ=32.01;MQ0=9;MQRankSum=10.693;QD=5.48;ReadPosRankSum=-1.443;SB=-4.900e+02 GT:AD:DP:GQ:PL 0/1:169,140:313:99:1744,0,2511 chrXII 97129 . G A 1095.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DP=309;Dels=0.00;FS=527.310;HaplotypeScore=12.2051;MLEAC=1;MLEAF=0.500;MQ=29.48;MQ0=9;MQRankSum=11.623;QD=3.54;ReadPosRankSum=0.344;SB=-2.880e+02 GT:AD:DP:GQ:PL 0/1:165,144:309:99:1125,0,2550 chrXII 97147 . G A 928.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.317;DP=276;Dels=0.00;FS=464.357;HaplotypeScore=13.6021;MLEAC=1;MLEAF=0.500;MQ=27.77;MQ0=11;MQRankSum=12.792;QD=3.36;ReadPosRankSum=0.526;SB=-3.070e+02 GT:AD:DP:GQ:PL 0/1:130,146:276:99:958,0,1669 chrXII 97153 . G T 1079.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.227;DP=272;Dels=0.00;FS=408.722;HaplotypeScore=19.9901;MLEAC=1;MLEAF=0.500;MQ=27.63;MQ0=11;MQRankSum=13.043;QD=3.97;ReadPosRankSum=-0.479;SB=-6.640e+02 GT:AD:DP:GQ:PL 0/1:118,154:272:99:1109,0,1552 chrXII 97159 . G A 1224.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;DP=284;Dels=0.00;FS=331.865;HaplotypeScore=20.8657;MLEAC=1;MLEAF=0.500;MQ=30.11;MQ0=11;MQRankSum=11.931;QD=4.31;ReadPosRankSum=-2.793;SB=-8.770e+02 GT:AD:DP:GQ:PL 0/1:102,177:284:99:1254,0,1216 chrXII 97171 . A G 2184.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.889;DP=301;Dels=0.00;FS=331.100;HaplotypeScore=21.9511;MLEAC=1;MLEAF=0.500;MQ=35.70;MQ0=11;MQRankSum=12.282;QD=7.26;ReadPosRankSum=-3.756;SB=-1.127e+03 GT:AD:DP:GQ:PL 0/1:89,208:301:99:2214,0,798 chrXII 97559 . T C 2709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=121;Dels=0.00;FS=4.357;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=1.357;QD=22.39;ReadPosRankSum=1.674;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2742,297,0 chrXII 97599 . C T 2358 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.67;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2391,261,0 chrXII 97654 . A C 2169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=4.095;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.857;QD=22.83;ReadPosRankSum=1.659;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2202,243,0 chrXII 97693 . G A 1798 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1831,192,0 chrXII 97763 . A G 1636 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.41;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1669,183,0 chrXII 97828 . C T 2146 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.58;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2179,240,0 chrXII 98018 . T C 3288.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3288,354,0 chrXII 98056 . T C 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.252;QD=25.46;ReadPosRankSum=1.626;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3310,357,0 chrXII 98471 . A G 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=186;Dels=0.00;FS=7.470;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=1.235;QD=21.00;ReadPosRankSum=2.397;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:3906,411,0 chrXII 98473 . T C 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.777;QD=20.04;ReadPosRankSum=1.713;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:3747,417,0 chrXII 98655 . G A 4962.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.1432;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=24.09;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4962,520,0 chrXII 100126 . C T 2967 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.65;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3000,309,0 chrXII 100150 . C G 3046 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.56;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3079,333,0 chrXII 100410 . C T 3032 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.0870;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.69;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3065,315,0 chrXII 100476 . G C 3690.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.4600;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.12;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3690,396,0 chrXII 100544 . G A 3314.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=111.2731;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=24.92;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3314,345,0 chrXII 100583 . T G 2054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=3.578;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-1.661;QD=20.96;ReadPosRankSum=1.697;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2087,228,0 chrXII 100682 . A G 3627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8037;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.687;QD=23.55;ReadPosRankSum=0.967;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3627,399,0 chrXII 100782 . C A 3386.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.90;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3386,352,0 chrXII 101024 . C T 5510.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.7880;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.25;SB=-3.143e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5510,589,0 chrXII 101108 . G C 5260.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.4865;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.80;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:0,214:221:99:5260,562,0 chrXII 101321 . T C 5190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=5.8652;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-0.387;QD=21.90;ReadPosRankSum=1.717;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:5190,567,0 chrXII 101330 . T C 4899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.817;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=8.1435;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=1.042;QD=21.12;ReadPosRankSum=1.117;SB=-2.823e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:4899,503,0 chrXII 101382 . G A 3155 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=16.26;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3188,336,0 chrXII 101399 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=199;Dels=0.00;FS=9.503;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=-0.081;QD=16.43;ReadPosRankSum=2.954;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:3,195:199:99:3270,360,0 chrXII 101560 . T C 3486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=190;Dels=0.00;FS=3.680;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;MQRankSum=-0.486;QD=18.35;ReadPosRankSum=1.677;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:3486,390,0 chrXII 101577 . G A 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;MQRankSum=0.637;QD=17.52;ReadPosRankSum=-0.498;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:1,173:180:99:3186,333,0 chrXII 101592 . A G 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=1.571;QD=16.54;ReadPosRankSum=1.661;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3241,372,0 chrXII 101729 . A T 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=167;Dels=0.00;FS=3.398;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.457;QD=24.18;ReadPosRankSum=1.711;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4038,418,0 chrXII 101803 . A G 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.064;QD=22.62;ReadPosRankSum=1.711;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3687,408,0 chrXII 101965 . T G 3738.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.3476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3738,402,0 chrXII 102371 . G A 3768.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3768,391,0 chrXII 102471 . T G 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=3.201;HaplotypeScore=11.9508;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.212;QD=22.14;ReadPosRankSum=1.707;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3155,345,0 chrXII 103112 . A C 4946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=204;Dels=0.00;FS=7.049;HaplotypeScore=12.8560;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.380;QD=24.25;ReadPosRankSum=2.364;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:3,200:204:99:4946,534,0 chrXII 103352 . C T 4464.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=16.5993;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=24.39;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4464,475,0 chrXII 103496 . A G 4910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=195;Dels=0.00;FS=3.740;HaplotypeScore=10.2454;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;MQRankSum=-1.554;QD=25.18;ReadPosRankSum=1.714;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4910,537,0 chrXII 103524 . C T 4346.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.87;MQ0=0;QD=26.34;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4346,453,0 chrXII 103548 . T C 4156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=3.064;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;MQRankSum=-0.063;QD=25.04;ReadPosRankSum=1.711;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:4156,447,0 chrXII 103584 . A G 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=162;Dels=0.00;FS=3.033;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=45.80;MQ0=0;MQRankSum=-0.527;QD=22.33;ReadPosRankSum=2.419;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3618,402,0 chrXII 103650 . C A 2578.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=9.070;DP=326;Dels=0.00;FS=116.788;HaplotypeScore=64.1204;MLEAC=1;MLEAF=0.500;MQ=37.37;MQ0=0;MQRankSum=-1.671;QD=7.91;ReadPosRankSum=1.983;SB=-6.610e+02 GT:AD:DP:GQ:PL 0/1:166,159:326:99:2608,0,1195 chrXII 103655 . A G 2346.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.374;DP=331;Dels=0.00;FS=91.147;HaplotypeScore=49.8251;MLEAC=1;MLEAF=0.500;MQ=37.23;MQ0=0;MQRankSum=-2.186;QD=7.09;ReadPosRankSum=2.166;SB=-4.910e+02 GT:AD:DP:GQ:PL 0/1:178,153:331:99:2376,0,1867 chrXII 103660 . A C 2162.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.613;DP=341;Dels=0.00;FS=92.948;HaplotypeScore=86.8237;MLEAC=1;MLEAF=0.500;MQ=37.96;MQ0=0;MQRankSum=-5.465;QD=6.34;ReadPosRankSum=2.103;SB=-3.520e+02 GT:AD:DP:GQ:PL 0/1:195,145:341:99:2192,0,2279 chrXII 103664 . T C 1899.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.783;DP=339;Dels=0.00;FS=130.337;HaplotypeScore=86.9135;MLEAC=1;MLEAF=0.500;MQ=38.29;MQ0=0;MQRankSum=-4.325;QD=5.60;ReadPosRankSum=3.435;SB=-1.110e+02 GT:AD:DP:GQ:PL 0/1:205,133:339:99:1929,0,2588 chrXII 103682 . C T 1541.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.207;DP=353;Dels=0.00;FS=173.801;HaplotypeScore=102.8407;MLEAC=1;MLEAF=0.500;MQ=38.58;MQ0=0;MQRankSum=-6.738;QD=4.37;ReadPosRankSum=3.584;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:243,110:353:99:1571,0,3478 chrXII 103694 . G A 3378.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;DP=373;Dels=0.00;FS=280.116;HaplotypeScore=100.4438;MLEAC=1;MLEAF=0.500;MQ=37.81;MQ0=0;MQRankSum=2.501;QD=9.06;ReadPosRankSum=-0.846;SB=-2.069e+03 GT:AD:DP:GQ:PL 0/1:143,230:373:99:3378,0,1965 chrXII 103697 . T C 1826.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.044;DP=386;Dels=0.00;FS=320.353;HaplotypeScore=125.5986;MLEAC=1;MLEAF=0.500;MQ=37.43;MQ0=0;MQRankSum=-5.608;QD=4.73;ReadPosRankSum=1.852;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:248,138:386:99:1856,0,3364 chrXII 103700 . A G 6752.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=392;Dels=0.00;FS=5.294;HaplotypeScore=125.5537;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;MQRankSum=1.650;QD=17.22;ReadPosRankSum=2.972;SB=-3.844e+03 GT:AD:DP:GQ:PL 1/1:3,387:392:99:6752,730,0 chrXII 103706 . G A 1098.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.259;DP=389;Dels=0.00;FS=210.893;HaplotypeScore=75.4759;MLEAC=1;MLEAF=0.500;MQ=38.41;MQ0=0;MQRankSum=-6.103;QD=2.82;ReadPosRankSum=2.148;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:300,87:389:99:1128,0,4071 chrXII 103707 . A G 1499.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;DP=386;Dels=0.00;FS=305.348;HaplotypeScore=73.1099;MLEAC=1;MLEAF=0.500;MQ=38.49;MQ0=0;MQRankSum=-8.017;QD=3.88;ReadPosRankSum=3.597;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:266,120:386:99:1529,0,3890 chrXII 103713 . G A 1480.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.640;DP=374;Dels=0.00;FS=311.231;HaplotypeScore=79.9851;MLEAC=1;MLEAF=0.500;MQ=37.97;MQ0=0;MQRankSum=-9.254;QD=3.96;ReadPosRankSum=2.012;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:256,117:374:99:1510,0,3675 chrXII 103721 . A G 1132.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.668;DP=348;Dels=0.00;FS=253.504;HaplotypeScore=27.5413;MLEAC=1;MLEAF=0.500;MQ=37.72;MQ0=0;MQRankSum=-4.786;QD=3.25;ReadPosRankSum=2.040;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:243,103:348:99:1162,0,3484 chrXII 103723 . T C 1192.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.790;DP=315;Dels=0.00;FS=208.095;HaplotypeScore=22.0692;MLEAC=1;MLEAF=0.500;MQ=35.81;MQ0=0;MQRankSum=-3.962;QD=3.78;ReadPosRankSum=-0.292;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:210,103:315:99:1222,0,2696 chrXII 103737 . G T 894.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.597;DP=288;Dels=0.00;FS=145.519;HaplotypeScore=23.5290;MLEAC=1;MLEAF=0.500;MQ=36.59;MQ0=0;MQRankSum=-2.289;QD=3.10;ReadPosRankSum=-1.581;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:191,96:288:99:924,0,2500 chrXII 103751 . C T 180.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.951;DP=244;Dels=0.00;FS=81.137;HaplotypeScore=14.8899;MLEAC=1;MLEAF=0.500;MQ=39.36;MQ0=0;MQRankSum=-3.125;QD=0.74;ReadPosRankSum=0.363;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:197,45:244:99:210,0,2552 chrXII 103806 . A G 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.3045;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.988;QD=23.10;ReadPosRankSum=1.655;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3174,354,0 chrXII 104406 . T G 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=163;Dels=0.00;FS=9.176;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.409;QD=22.98;ReadPosRankSum=2.389;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3746,405,0 chrXII 104468 . A T 4701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.065;QD=24.87;ReadPosRankSum=1.714;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4701,496,0 chrXII 105266 . A G 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.2179;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.742;QD=22.78;ReadPosRankSum=1.703;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2744,291,0 chrXII 106136 . A G 4570.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.32;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4570,498,0 chrXII 106190 . A G 4522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=194;Dels=0.00;FS=6.607;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.544;QD=23.31;ReadPosRankSum=2.424;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:2,190:194:99:4522,486,0 chrXII 106406 . G A 2965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=143;Dels=0.00;FS=3.964;HaplotypeScore=5.1265;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-1.586;QD=20.73;ReadPosRankSum=1.293;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2998,309,0 chrXII 106427 . G A 2881 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.34;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2914,309,0 chrXII 106804 . G A 3767.01 SnpCluster AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.9125;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=21.28;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3767,391,0 chrXII 106805 . G A 3761.01 SnpCluster AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.9701;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=21.25;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3761,394,0 chrXII 106808 . A G 3621.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.8921;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;MQRankSum=0.214;QD=20.23;ReadPosRankSum=1.693;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3621,393,0 chrXII 106919 . T C 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.9657;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.641;QD=23.18;ReadPosRankSum=2.405;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3802,423,0 chrXII 106937 . T C 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.0145;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-1.525;QD=23.16;ReadPosRankSum=2.421;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3938,429,0 chrXII 107127 . G A 6273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=5.8660;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.294;QD=22.98;ReadPosRankSum=0.779;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:1,268:273:99:6273,658,0 chrXII 107151 . G T 5837.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=12.8893;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.70;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:0,267:269:99:5837,639,0 chrXII 107406 . G A 6941.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=18.7246;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.53;SB=-3.387e+03 GT:AD:DP:GQ:PL 1/1:0,295:295:99:6941,721,0 chrXII 107468 . G A 7082.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=12.6914;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.02;SB=-3.497e+03 GT:AD:DP:GQ:PL 1/1:0,283:283:99:7082,763,0 chrXII 108039 . T C 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.000;DP=136;Dels=0.00;FS=4.831;HaplotypeScore=96.6235;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-1.422;QD=15.04;ReadPosRankSum=1.058;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:4,129:136:99:2078,225,0 chrXII 108643 . T C 4592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.446;QD=23.55;ReadPosRankSum=1.714;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4592,507,0 chrXII 108705 . T G 4698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=208;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-0.634;QD=22.59;ReadPosRankSum=1.681;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4698,502,0 chrXII 108712 . G T 4813.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.7651;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.93;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4813,516,0 chrXII 109072 . A T 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=12.0367;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.577;QD=20.00;ReadPosRankSum=1.700;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2213,228,0 chrXII 109244 . A G 1070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=83;Dels=0.01;FS=9.438;HaplotypeScore=12.6493;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;MQRankSum=-1.819;QD=12.89;ReadPosRankSum=2.270;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1103,120,0 chrXII 109261 . G A 1117 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=59.0954;MLEAC=2;MLEAF=1.00;MQ=42.35;MQ0=0;QD=15.30;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1150,120,0 chrXII 109262 . C T 1118 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=59.0954;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;QD=15.53;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1151,120,0 chrXII 109400 . A G 1742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=96;Dels=0.00;FS=6.349;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;MQRankSum=-0.246;QD=18.15;ReadPosRankSum=2.398;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:2,93:96:99:1775,201,0 chrXII 109403 . A C 1699 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=17.88;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1732,195,0 chrXII 109427 . A T 1944 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;QD=18.17;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1977,216,0 chrXII 109450 . G A 2228 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=17.01;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2261,246,0 chrXII 109577 . C T 2914 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.69;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2947,306,0 chrXII 109604 . A G 2284 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.35;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2317,255,0 chrXII 109655 . T C 2995 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6924;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=22.35;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3028,333,0 chrXII 109678 . C T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=23.31;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3543,372,0 chrXII 109707 . T A 3726.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=21.66;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3726,399,0 chrXII 109729 . A C 2993 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.56;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3026,345,0 chrXII 109856 . T A 2459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=125;Dels=0.00;FS=5.937;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=1.057;QD=19.67;ReadPosRankSum=2.799;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2492,258,0 chrXII 109857 . T C 2414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=126;Dels=0.00;FS=2.975;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-1.279;QD=19.16;ReadPosRankSum=2.411;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2447,264,0 chrXII 111174 . A T 7192.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=17.5201;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.63;SB=-3.778e+03 GT:AD:DP:GQ:PL 1/1:0,292:292:99:7192,748,0 chrXII 112357 . C T 3866.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.7059;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=25.10;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3866,403,0 chrXII 112696 . C T 4486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.424;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.5767;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.232;QD=24.92;ReadPosRankSum=1.482;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4486,455,0 chrXII 112816 . T C 4061.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.47;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4061,441,0 chrXII 113145 . T C 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.234;DP=118;Dels=0.00;FS=8.243;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.587;QD=23.14;ReadPosRankSum=3.353;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:4,114:118:99:2763,306,0 chrXII 113418 . T C 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=152;Dels=0.00;FS=2.848;HaplotypeScore=11.0676;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.253;QD=23.12;ReadPosRankSum=2.385;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3514,387,0 chrXII 113614 . A G 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.211;QD=23.87;ReadPosRankSum=1.642;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3652,405,0 chrXII 113903 . G A 3057 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=14.1805;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.31;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3090,336,0 chrXII 114196 . T G 3005 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.43;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3038,327,0 chrXII 114379 . G T 4495.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.69;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4495,483,0 chrXII 114410 . G C 5151.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=25.88;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:5151,552,0 chrXII 114724 . T C 3852.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.0823;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3852,417,0 chrXII 115522 . A G 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.4638;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.000;QD=23.07;ReadPosRankSum=1.674;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2824,312,0 chrXII 116251 . G C 2290 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.90;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2323,249,0 chrXII 116491 . T A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3508,364,0 chrXII 116806 . C A 2504 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.56;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2537,273,0 chrXII 116824 . T G 2530 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.39;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2563,282,0 chrXII 116980 . G A 3128 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.63;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3161,342,0 chrXII 117244 . G C 2886 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.27;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2919,321,0 chrXII 117385 . T C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=1.016;QD=18.70;ReadPosRankSum=1.709;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:2875,315,0 chrXII 117391 . G C 2881 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.47;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2914,321,0 chrXII 117717 . A G 2970 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2365;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3003,327,0 chrXII 118453 . A T 4016.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.62;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4016,438,0 chrXII 118976 . A G 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.999;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.996;QD=24.84;ReadPosRankSum=1.640;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2840,306,0 chrXII 120183 . G A 4087.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=15.9225;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.33;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4087,421,0 chrXII 120216 . C T 4391.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.4368;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.83;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4391,454,0 chrXII 120364 . C T 3710.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.09;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,149:154:99:3710,396,0 chrXII 120494 . C G 3633.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.88;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3633,393,0 chrXII 120550 . C T 4345.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.56;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4345,460,0 chrXII 120592 . A G 4289.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.57;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4289,462,0 chrXII 121206 . T G 3087 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.75;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3120,333,0 chrXII 121567 . T A 2605 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2638,276,0 chrXII 122034 . A C 340.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;DP=120;Dels=0.00;FS=27.632;HaplotypeScore=61.9891;MLEAC=1;MLEAF=0.500;MQ=47.90;MQ0=3;MQRankSum=1.021;QD=2.83;ReadPosRankSum=4.671;SB=-3.168e+02 GT:AD:DP:GQ:PL 0/1:50,68:120:99:370,0,232 chrXII 122182 . C T 2100 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.71;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2133,225,0 chrXII 123487 . C G 4986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.972;DP=213;Dels=0.00;FS=2.555;HaplotypeScore=9.7113;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.744;QD=23.41;ReadPosRankSum=-1.194;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:3,209:213:99:4986,546,0 chrXII 124013 . A G 3837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.7998;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.543;QD=22.98;ReadPosRankSum=1.669;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3837,423,0 chrXII 124317 . G C 5094.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.26;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5094,550,0 chrXII 124344 . T C 4369.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.41;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,191:195:99:4369,468,0 chrXII 124421 . T C 3980.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=17.4524;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.86;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:3980,444,0 chrXII 124596 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.9827;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=17.93;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3243,354,0 chrXII 124642 . G T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.27;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3344,351,0 chrXII 125226 . G A 890 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:923,99,0 chrXII 126014 . A G 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=116;Dels=0.00;FS=3.127;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.518;QD=23.78;ReadPosRankSum=1.701;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2791,309,0 chrXII 127927 . T C 4848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.626;DP=223;Dels=0.00;FS=12.168;HaplotypeScore=17.2816;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.470;QD=21.74;ReadPosRankSum=3.767;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:5,216:223:99:4848,528,0 chrXII 128121 . A T 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.6827;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.457;QD=23.18;ReadPosRankSum=1.714;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4405,454,0 chrXII 128227 . G A 4213.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.4539;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.02;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4213,459,0 chrXII 128267 . T C 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=178;Dels=0.00;FS=2.990;HaplotypeScore=9.0855;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.194;QD=22.67;ReadPosRankSum=2.394;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4036,432,0 chrXII 128383 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.8996;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.96;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3536,367,0 chrXII 128500 . T C 3627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=3.952;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.667;QD=22.81;ReadPosRankSum=1.710;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3627,396,0 chrXII 128653 . T C 3935.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3935,435,0 chrXII 129022 . A G 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=139;Dels=0.00;FS=2.426;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-1.022;QD=22.71;ReadPosRankSum=2.935;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3189,357,0 chrXII 129090 . C T 2219 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.86;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2252,231,0 chrXII 129419 . T G 2271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=103;Dels=0.00;FS=2.983;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-0.490;QD=22.05;ReadPosRankSum=2.402;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2304,252,0 chrXII 129764 . A G 4174.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.99;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4174,450,0 chrXII 129900 . A G 7942.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=17.2861;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;QD=24.74;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,318:321:99:7942,862,0 chrXII 129964 . G A 8459.01 filter AC=2;AF=1.00;AN=2;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=10.4546;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=23.37;SB=-3.200e+03 GT:AD:DP:GQ:PL 1/1:1,360:362:99:8459,880,0 chrXII 129999 . A G 6272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=309;Dels=0.00;FS=7.256;HaplotypeScore=24.0756;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-1.584;QD=20.30;ReadPosRankSum=2.417;SB=-3.355e+03 GT:AD:DP:GQ:PL 1/1:2,305:309:99:6272,714,0 chrXII 130083 . C T 5107.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=439;Dels=0.00;FS=9.326;HaplotypeScore=188.4930;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;MQRankSum=8.589;QD=11.63;ReadPosRankSum=-9.598;SB=-3.753e+03 GT:AD:DP:GQ:PL 1/1:88,351:439:99:5107,528,0 chrXII 130107 . G T 663.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.959;DP=386;Dels=0.01;FS=52.620;HaplotypeScore=119.1860;MLEAC=1;MLEAF=0.500;MQ=45.11;MQ0=0;MQRankSum=-1.523;QD=1.72;ReadPosRankSum=-7.910;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:309,69:383:99:693,0,1757 chrXII 130109 . G A 343.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.415;DP=386;Dels=0.01;FS=9.764;HaplotypeScore=112.3993;MLEAC=1;MLEAF=0.500;MQ=45.03;MQ0=0;MQRankSum=-1.136;QD=0.89;ReadPosRankSum=-6.571;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:344,39:383:99:373,0,2067 chrXII 130110 . T C 308.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.892;DP=383;Dels=0.01;FS=4.551;HaplotypeScore=112.3993;MLEAC=1;MLEAF=0.500;MQ=44.93;MQ0=0;MQRankSum=-2.557;QD=0.80;ReadPosRankSum=-6.192;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:345,35:380:99:338,0,2195 chrXII 130115 . G A 96.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.980;DP=392;Dels=0.00;FS=8.464;HaplotypeScore=344.9990;MLEAC=1;MLEAF=0.500;MQ=45.47;MQ0=0;MQRankSum=-3.360;QD=0.24;ReadPosRankSum=-6.104;SB=-2.080e+02 GT:AD:DP:GQ:PL 0/1:363,29:392:99:126,0,2489 chrXII 130116 . T C 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.543;DP=392;Dels=0.00;FS=11.871;HaplotypeScore=333.4411;MLEAC=1;MLEAF=0.500;MQ=45.56;MQ0=0;MQRankSum=-4.939;QD=0.14;ReadPosRankSum=-5.458;SB=-2.320e+02 GT:AD:DP:GQ:PL 0/1:368,24:392:86:86,0,2649 chrXII 130119 . T G 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.073;DP=398;Dels=0.00;FS=11.870;HaplotypeScore=300.5696;MLEAC=1;MLEAF=0.500;MQ=46.14;MQ0=0;MQRankSum=-4.442;QD=0.08;ReadPosRankSum=-6.237;SB=-2.560e+02 GT:AD:DP:GQ:PL 0/1:374,24:398:63:63,0,2595 chrXII 130209 . A G 5052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.396;DP=321;Dels=0.00;FS=5.089;HaplotypeScore=4.8165;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=-3.368;QD=15.74;ReadPosRankSum=3.330;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:4,315:321:99:5052,549,0 chrXII 130212 . G A 5077.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=7.2534;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=15.77;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:0,319:322:99:5077,549,0 chrXII 130354 . G T 4120.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=25.4877;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=19.90;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4120,453,0 chrXII 130614 . A C 6860.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=25.3313;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.25;SB=-3.388e+03 GT:AD:DP:GQ:PL 1/1:0,292:295:99:6860,742,0 chrXII 130729 . C T 4912.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=23.06;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4912,531,0 chrXII 130739 . G A 5139.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=23.90;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5139,526,0 chrXII 130857 . C G 4720.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=25.8643;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.52;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:4720,519,0 chrXII 130906 . T G 149.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.239;DP=195;Dels=0.00;FS=4.466;HaplotypeScore=166.6032;MLEAC=1;MLEAF=0.500;MQ=53.39;MQ0=0;MQRankSum=3.199;QD=0.76;ReadPosRankSum=-6.982;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:158,35:195:99:179,0,1273 chrXII 130917 . C G 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.999;DP=182;Dels=0.00;FS=18.588;HaplotypeScore=6.5736;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=-0.052;QD=15.53;ReadPosRankSum=4.121;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:7,173:182:99:2859,327,0 chrXII 130976 . A G 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=159;Dels=0.00;FS=7.621;HaplotypeScore=19.6338;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-1.376;QD=19.52;ReadPosRankSum=2.403;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3136,342,0 chrXII 132109 . T G 3720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=200;Dels=0.00;FS=10.566;HaplotypeScore=9.5676;MLEAC=2;MLEAF=1.00;MQ=40.42;MQ0=0;MQRankSum=-2.005;QD=18.60;ReadPosRankSum=2.934;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:3,196:200:99:3720,402,0 chrXII 132130 . C A 3164 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.9226;MLEAC=2;MLEAF=1.00;MQ=37.52;MQ0=0;QD=16.23;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3197,339,0 chrXII 132136 . A G 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=210;Dels=0.00;FS=6.294;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=0;MQRankSum=-2.169;QD=13.92;ReadPosRankSum=2.414;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:2956,321,0 chrXII 132144 . T A 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.40;MQ0=0;MQRankSum=-1.410;QD=12.77;ReadPosRankSum=1.716;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:2779,294,0 chrXII 132151 . A G 2481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=229;Dels=0.00;FS=3.738;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=40.67;MQ0=0;MQRankSum=-0.557;QD=10.83;ReadPosRankSum=1.702;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:1,226:229:99:2514,282,0 chrXII 132219 . G A 3036 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=14.74;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:3069,321,0 chrXII 132253 . G A 907 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=161.8155;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=2;QD=4.68;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:940,102,0 chrXII 132256 . G A 737 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=160.2381;MLEAC=2;MLEAF=1.00;MQ=34.23;MQ0=3;QD=3.82;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:84:770,84,0 chrXII 132379 . G A 6022.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=24.28;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:6022,628,0 chrXII 132427 . C T 4094.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.1973;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=22.62;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4094,444,0 chrXII 132610 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=19.22;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3032,333,0 chrXII 132631 . T C 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.6905;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=0.603;QD=19.71;ReadPosRankSum=1.713;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3508,381,0 chrXII 132973 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.2781;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.30;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3450,369,0 chrXII 132982 . A G 3395.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.58;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3395,375,0 chrXII 133132 . T C 2601 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.67;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2634,288,0 chrXII 133477 . C T 4901.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.7731;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.38;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4901,520,0 chrXII 133681 . T A 5574.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.3622;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.22;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5574,583,0 chrXII 134269 . T A 1188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=80;Dels=0.04;FS=0.000;HaplotypeScore=8.3827;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-1.372;QD=14.85;ReadPosRankSum=1.687;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1221,129,0 chrXII 134294 . T C 1477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.214;QD=20.23;ReadPosRankSum=1.685;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1510,168,0 chrXII 134767 . A G 5820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=240;Dels=0.00;FS=6.531;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=2.108;QD=24.25;ReadPosRankSum=2.429;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:2,235:240:99:5820,628,0 chrXII 135031 . G A 3961.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.01;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3961,435,0 chrXII 135067 . T G 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.800;DP=172;Dels=0.00;FS=20.095;HaplotypeScore=11.3516;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.243;QD=24.19;ReadPosRankSum=3.718;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:5,166:172:99:4160,453,0 chrXII 136215 . A G 3946.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.49;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3946,423,0 chrXII 136300 . T C 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.320;QD=21.76;ReadPosRankSum=1.684;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3167,351,0 chrXII 136383 . C A 4195.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.74;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4195,433,0 chrXII 136527 . T C 3290.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3290,348,0 chrXII 137383 . G C 3739.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.1248;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.44;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3739,402,0 chrXII 137707 . T C 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=151;Dels=0.00;FS=8.358;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=-0.562;QD=22.42;ReadPosRankSum=2.417;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3386,366,0 chrXII 138124 . G C 2536 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.27;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2569,279,0 chrXII 138279 . C T 3054 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.62;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3087,324,0 chrXII 138957 . T C 2298 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.53;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2331,258,0 chrXII 139269 . G T 2311 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.58;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2344,246,0 chrXII 139321 . A T 1676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.317;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.220;QD=19.05;ReadPosRankSum=1.693;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1709,180,0 chrXII 139322 . A T 1651 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.98;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1684,186,0 chrXII 139437 . T C 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=3.285;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.742;QD=24.28;ReadPosRankSum=1.697;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2412,261,0 chrXII 139668 . A G 1748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.268;QD=24.62;ReadPosRankSum=1.635;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1781,192,0 chrXII 139713 . C T 1880 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.50;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1913,198,0 chrXII 139887 . G A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.8757;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.13;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3527,372,0 chrXII 140043 . C T 3878.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3878,403,0 chrXII 140082 . C T 3567.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3567,384,0 chrXII 140285 . A G 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.441;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.243;QD=20.38;ReadPosRankSum=1.700;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2234,243,0 chrXII 140475 . C T 2113 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.46;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,81:83:99:2146,222,0 chrXII 140584 . T C 1967 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.9023;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.59;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:2000,219,0 chrXII 140635 . A T 1815 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.10;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1848,201,0 chrXII 140753 . G A 2844 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.39;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2877,315,0 chrXII 140797 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.45;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2771,303,0 chrXII 140874 . C T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.28;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3311,343,0 chrXII 141078 . C T 5106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.1110;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=0.806;QD=24.91;ReadPosRankSum=0.240;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:5106,529,0 chrXII 141282 . T C 4988.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=24.21;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4988,537,0 chrXII 141291 . T C 4769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=202;Dels=0.00;FS=4.089;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-1.282;QD=23.61;ReadPosRankSum=1.715;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4769,514,0 chrXII 141390 . C T 4691.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4691,490,0 chrXII 141762 . C T 2469 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.51;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2502,258,0 chrXII 141933 . G A 3055 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.84;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:3088,327,0 chrXII 142077 . A G 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=131;Dels=0.00;FS=6.328;HaplotypeScore=12.7962;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.239;QD=20.16;ReadPosRankSum=2.336;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2674,300,0 chrXII 142324 . A C 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.754;QD=22.26;ReadPosRankSum=1.704;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2815,309,0 chrXII 142500 . C T 2906 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=11.1535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.49;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2939,309,0 chrXII 142998 . G A 2761 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.08;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2794,300,0 chrXII 143009 . C G 2667 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.36;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2700,303,0 chrXII 143093 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=13.4647;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.33;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2879,300,0 chrXII 143135 . G A 3535.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=26.38;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3535,364,0 chrXII 143164 . C A 3745.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=25.83;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3745,396,0 chrXII 143329 . C G 3824.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.20;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3824,417,0 chrXII 143452 . T C 2451 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=16.23;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2484,264,0 chrXII 143487 . T C 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.796;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.611;QD=18.85;ReadPosRankSum=1.707;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2653,285,0 chrXII 143737 . A G 2088 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.98;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2121,231,0 chrXII 144379 . A G 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=107;Dels=0.00;FS=3.038;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.499;QD=24.01;ReadPosRankSum=2.403;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2602,285,0 chrXII 144822 . G A 4241.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.1420;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=25.86;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4241,439,0 chrXII 145042 . G T 4198.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.1542;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.32;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4198,447,0 chrXII 145067 . G A 4490.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=24.54;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4490,466,0 chrXII 145416 . G A 3094 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.62;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3127,327,0 chrXII 145756 . C T 3648.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=24.16;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3648,393,0 chrXII 145780 . C T 3759.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.64;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3759,408,0 chrXII 145897 . C T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.28;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3771,402,0 chrXII 145930 . C T 3572.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.75;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3572,381,0 chrXII 146140 . G A 3852.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.40;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3852,423,0 chrXII 146210 . G A 4851.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.5348;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:4851,508,0 chrXII 146347 . C T 4703.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.8521;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4703,490,0 chrXII 146506 . G A 2735 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2768,288,0 chrXII 146588 . G A 2378 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2411,252,0 chrXII 146773 . C G 1900 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.35;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1933,216,0 chrXII 147005 . C A 3031 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.05;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3064,321,0 chrXII 147475 . T C 5108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=225;Dels=0.00;FS=7.438;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=1.117;QD=22.70;ReadPosRankSum=2.295;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:2,221:225:99:5108,547,0 chrXII 148030 . G T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.93;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3279,340,0 chrXII 148252 . A G 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=3.233;HaplotypeScore=8.6026;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.751;QD=22.72;ReadPosRankSum=1.617;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2782,309,0 chrXII 149035 . T C 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=3.513;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.947;QD=22.18;ReadPosRankSum=1.705;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2872,309,0 chrXII 149617 . C A 4639.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.443;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.101;QD=24.16;ReadPosRankSum=1.389;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4639,470,0 chrXII 149893 . G A 3010 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.70;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3043,330,0 chrXII 150249 . A G 3088 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=23.75;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3121,333,0 chrXII 150352 . G A 2835 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=25.09;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2868,300,0 chrXII 150367 . A G 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;MQRankSum=-0.717;QD=23.29;ReadPosRankSum=1.672;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2781,297,0 chrXII 150435 . T A 2251 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.73;MQ0=0;QD=25.29;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2284,234,0 chrXII 150440 . T C 2212 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=23.78;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2245,237,0 chrXII 150496 . C A 1814 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;QD=22.40;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1847,195,0 chrXII 150499 . C T 1601 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=0;QD=20.53;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1634,180,0 chrXII 150544 . C T 200.03 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.47;MQ0=0;QD=4.08;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:24:233,24,0 chrXII 150645 . A C 1656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.83;MQ0=0;MQRankSum=-1.080;QD=23.66;ReadPosRankSum=1.682;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1689,186,0 chrXII 150660 . A G 1524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;MQRankSum=-0.279;QD=24.19;ReadPosRankSum=1.621;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1557,168,0 chrXII 150816 . C T 955 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;QD=20.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:47:99:988,102,0 chrXII 150826 . G T 865 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=23.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:37:93:898,93,0 chrXII 150833 . T A 813 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=0;QD=23.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:87:846,87,0 chrXII 150858 . G T 567 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;QD=22.68;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:63:600,63,0 chrXII 150865 . A G 393 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=17.86;SB=-6.759e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:45:426,45,0 chrXII 150874 . A C 319 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.504;QD=21.27;ReadPosRankSum=1.504;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:1,14:15:39:352,39,0 chrXII 150875 . C A 313 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=22.36;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:39:346,39,0 chrXII 150955 . A G 793 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:90:826,90,0 chrXII 150983 . C T 905 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=16.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:938,102,0 chrXII 151001 . G A 1288 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=19.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1321,138,0 chrXII 151034 . T A 743 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;MQRankSum=-1.335;QD=12.18;ReadPosRankSum=1.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,60:61:81:776,81,0 chrXII 151046 . T A 946 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=16.03;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:979,99,0 chrXII 151102 . G A 993 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=15.28;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1026,108,0 chrXII 151146 . T C 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.068;DP=90;Dels=0.00;FS=2.610;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=50.58;MQ0=0;MQRankSum=1.708;QD=0.21;ReadPosRankSum=-2.877;SB=-8.501e+01 GT:AD:DP:GQ:PL 0/1:87,3:90:49:49,0,89 chrXII 151170 . G A 2223 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=20.03;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2256,234,0 chrXII 151178 . T C 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=123;Dels=0.00;FS=3.004;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;MQRankSum=-0.454;QD=18.94;ReadPosRankSum=2.349;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2363,252,0 chrXII 151249 . C A 3851.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=25.50;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3851,397,0 chrXII 151308 . C T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=24.93;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3964,426,0 chrXII 151453 . G C 4278.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.00;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4278,468,0 chrXII 151548 . C A 3418.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.9246;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.34;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3418,369,0 chrXII 151611 . T C 3415.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.7097;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.21;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3415,384,0 chrXII 151726 . C T 4170.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.10;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4170,433,0 chrXII 151811 . C T 3785.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.1328;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=25.07;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3785,394,0 chrXII 152060 . A T 2831 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=21.13;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2864,312,0 chrXII 152079 . A G 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=131;Dels=0.00;FS=2.593;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=-1.285;QD=19.11;ReadPosRankSum=2.854;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2536,276,0 chrXII 152081 . A C 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=125;Dels=0.00;FS=2.585;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=-1.008;QD=19.04;ReadPosRankSum=2.944;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2413,264,0 chrXII 152313 . A G 2851 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.1187;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.76;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2884,306,0 chrXII 152571 . T C 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=139;Dels=0.00;FS=6.115;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.274;QD=24.56;ReadPosRankSum=2.414;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3414,378,0 chrXII 152808 . G T 3176 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.01;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3209,330,0 chrXII 153157 . T C 2457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=116;Dels=0.00;FS=14.316;HaplotypeScore=9.1879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.904;QD=21.18;ReadPosRankSum=2.886;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:3,112:116:99:2490,267,0 chrXII 153450 . A G 3119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=134;Dels=0.00;FS=3.947;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.525;QD=23.28;ReadPosRankSum=1.706;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3152,354,0 chrXII 153780 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.48;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3280,357,0 chrXII 154310 . T C 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.441;QD=23.72;ReadPosRankSum=1.645;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2856,312,0 chrXII 154511 . C T 3064 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.89;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3097,327,0 chrXII 154678 . C T 3907.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.4520;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3907,411,0 chrXII 155280 . A G 3343.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.85;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3343,369,0 chrXII 156073 . A G 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=185;Dels=0.00;FS=3.058;HaplotypeScore=13.4583;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.056;QD=21.69;ReadPosRankSum=1.694;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4013,429,0 chrXII 156675 . C T 2198 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2231,231,0 chrXII 157014 . T C 2199 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2232,246,0 chrXII 157254 . G A 2089 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2122,225,0 chrXII 157356 . T C 2457 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=25.33;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2490,270,0 chrXII 157753 . A T 2061 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.93;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2094,216,0 chrXII 157785 . T C 1650 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8266;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.88;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1683,186,0 chrXII 157806 . C T 1725 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=18.96;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1758,195,0 chrXII 158132 . A T 4639.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.08;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4639,478,0 chrXII 159272 . A C 5038.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:5038,555,0 chrXII 159591 . G A 5205.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=15.6529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.06;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5205,544,0 chrXII 159671 . C G 5066.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.3501;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.82;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,218:222:99:5066,552,0 chrXII 160435 . A C 4309.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.3358;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4309,459,0 chrXII 161416 . C T 2992 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.16;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3025,324,0 chrXII 161602 . C A 1292 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=8.3529;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.84;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1325,138,0 chrXII 162566 . G A 3412.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.03;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3412,360,0 chrXII 162900 . C T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.58;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3513,366,0 chrXII 162922 . G A 3512.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.57;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3512,364,0 chrXII 163290 . A G 5203.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=213;Dels=0.00;FS=5.319;HaplotypeScore=9.5583;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.928;QD=24.43;ReadPosRankSum=1.666;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:5203,556,0 chrXII 163451 . A G 5916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.103;QD=21.75;ReadPosRankSum=1.668;SB=-3.296e+03 GT:AD:DP:GQ:PL 1/1:1,270:272:99:5916,669,0 chrXII 164023 . A T 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.389;QD=21.75;ReadPosRankSum=1.709;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3252,354,0 chrXII 164111 . A G 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.249;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-0.742;QD=22.51;ReadPosRankSum=1.670;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2577,279,0 chrXII 164123 . A C 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=3.245;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.033;QD=21.25;ReadPosRankSum=1.702;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2456,264,0 chrXII 164197 . A G 2443 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.01;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2476,267,0 chrXII 164240 . A G 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=147;Dels=0.00;FS=10.075;HaplotypeScore=9.9090;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-0.434;QD=20.46;ReadPosRankSum=1.343;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:3,142:147:99:3040,327,0 chrXII 164242 . T C 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.519;DP=146;Dels=0.00;FS=3.383;HaplotypeScore=5.0862;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=1.305;QD=20.70;ReadPosRankSum=-0.973;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3055,333,0 chrXII 164280 . C T 3662.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.19;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3662,379,0 chrXII 164329 . T C 4266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.007;QD=23.57;ReadPosRankSum=2.408;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:4266,462,0 chrXII 164682 . G A 4101.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=24.85;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4101,427,0 chrXII 164733 . C T 3698.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=21.25;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3698,379,0 chrXII 164734 . A G 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=175;Dels=0.00;FS=2.573;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;MQRankSum=-0.332;QD=19.59;ReadPosRankSum=2.393;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3429,378,0 chrXII 164844 . C T 3868.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.36;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3868,400,0 chrXII 164865 . G T 3299.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.62;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3299,354,0 chrXII 164907 . C A 2338 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=14.80;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2371,264,0 chrXII 164910 . T C 2306 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;QD=14.97;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2339,264,0 chrXII 164928 . A C 2166 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=14.25;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2199,246,0 chrXII 164945 . A G 2301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=3.791;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;MQRankSum=-0.197;QD=14.56;ReadPosRankSum=1.666;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2334,261,0 chrXII 165084 . A G 5190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=218;Dels=0.00;FS=6.082;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.577;QD=23.81;ReadPosRankSum=2.427;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:2,213:218:99:5190,567,0 chrXII 165412 . C T 3551.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.76;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3551,372,0 chrXII 165570 . T C 2604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=120;Dels=0.00;FS=4.150;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.466;QD=21.70;ReadPosRankSum=1.614;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,116:120:99:2637,288,0 chrXII 165585 . T C 2641 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.13;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2674,291,0 chrXII 165796 . A G 2954 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.63;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2987,324,0 chrXII 166160 . C T 4081.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.4969;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.80;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4081,427,0 chrXII 166391 . T C 2501 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7953;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.19;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2534,273,0 chrXII 166428 . G T 3182 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.23;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3215,342,0 chrXII 166515 . G A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.40;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3323,348,0 chrXII 166641 . G A 4428.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.7499;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.88;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4428,451,0 chrXII 166935 . A G 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.765;QD=23.10;ReadPosRankSum=1.642;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3558,384,0 chrXII 166947 . A G 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=151;Dels=0.00;FS=6.094;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-0.900;QD=22.85;ReadPosRankSum=2.954;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3451,369,0 chrXII 167296 . C A 2768 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2801,303,0 chrXII 167521 . A G 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=3.036;HaplotypeScore=10.6529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.482;QD=22.24;ReadPosRankSum=1.712;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3781,408,0 chrXII 167640 . T C 4299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.9244;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.590;QD=23.88;ReadPosRankSum=1.713;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4299,462,0 chrXII 167671 . A C 4643.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.87;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4643,504,0 chrXII 167685 . T C 4551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.967;DP=211;Dels=0.00;FS=2.577;HaplotypeScore=7.5102;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=0.258;QD=21.57;ReadPosRankSum=2.900;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:3,207:211:99:4551,504,0 chrXII 167737 . A G 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=172;Dels=0.00;FS=3.165;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.967;QD=20.72;ReadPosRankSum=1.712;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3564,387,0 chrXII 167878 . A G 4586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-0.545;QD=21.53;ReadPosRankSum=1.716;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4586,495,0 chrXII 168055 . A G 3078 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.14;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3111,333,0 chrXII 168120 . G A 3521.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=24.45;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3521,378,0 chrXII 168149 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.62;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3189,333,0 chrXII 168169 . C T 2926 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=20.46;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2959,321,0 chrXII 168351 . G T 3161 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=21.95;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3194,345,0 chrXII 168352 . G A 3202 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.78;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3235,345,0 chrXII 168647 . A T 4846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.500;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.0844;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-0.450;QD=24.35;ReadPosRankSum=1.499;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4846,503,0 chrXII 168685 . A G 4876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.125;DP=202;Dels=0.00;FS=2.169;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=0.815;QD=24.14;ReadPosRankSum=1.265;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:3,198:202:99:4876,512,0 chrXII 168730 . A G 4695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=226;Dels=0.00;FS=2.995;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;MQRankSum=-0.961;QD=20.77;ReadPosRankSum=2.428;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:4695,525,0 chrXII 169076 . G A 4737.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.4128;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=24.42;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4737,496,0 chrXII 169124 . G T 5115.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.1973;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.10;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:5115,535,0 chrXII 169177 . T A 4663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=3.082;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.577;QD=25.48;ReadPosRankSum=1.694;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4663,484,0 chrXII 169633 . C T 6064.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=12.0682;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.38;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,267:271:99:6064,625,0 chrXII 169816 . C T 2070 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.02;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2103,222,0 chrXII 169985 . G A 2573 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.97;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2606,270,0 chrXII 170000 . A G 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=5.346;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-1.640;QD=21.54;ReadPosRankSum=1.671;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2467,270,0 chrXII 170342 . C T 2553 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=20.59;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2586,270,0 chrXII 170350 . T C 2418 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=18.89;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2451,264,0 chrXII 170369 . C T 2509 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=19.15;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2542,267,0 chrXII 170451 . T G 1753 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.64;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1786,192,0 chrXII 170730 . T C 189.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;MQRankSum=-0.495;QD=6.75;ReadPosRankSum=1.609;SB=-5.504e+01 GT:AD:DP:GQ:PL 1/1:1,27:28:24:222,24,0 chrXII 170741 . A G 220.01 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=27.7240;MLEAC=2;MLEAF=1.00;MQ=34.50;MQ0=0;QD=7.33;SB=-5.702e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:27:253,27,0 chrXII 170816 . A G 586 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;QD=15.84;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,35:37:66:619,66,0 chrXII 170821 . A G 613 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=15.32;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,39:40:72:646,72,0 chrXII 170859 . G A 966 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=20.55;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:0,46:47:99:999,102,0 chrXII 170876 . G A 817 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=19.45;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:90:850,90,0 chrXII 170932 . T A 1281 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;QD=18.84;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1314,144,0 chrXII 170937 . C A 1354 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.88;MQ0=0;QD=19.91;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1387,147,0 chrXII 170963 . A G 1284 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9008;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=0;QD=17.35;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1317,144,0 chrXII 171013 . G A 1822 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=19.59;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1855,207,0 chrXII 171035 . C T 1783 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=17.83;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1816,195,0 chrXII 171038 . C T 1856 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=18.38;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1889,201,0 chrXII 171076 . T G 1824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=110;Dels=0.00;FS=2.858;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;MQRankSum=0.508;QD=16.58;ReadPosRankSum=2.382;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:2,107:110:99:1857,201,0 chrXII 171251 . C G 3315.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=22.55;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3315,360,0 chrXII 171335 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.334;QD=25.02;ReadPosRankSum=2.413;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3428,375,0 chrXII 171872 . A G 971 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=22.07;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1004,108,0 chrXII 171923 . C T 1454 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=0;QD=20.19;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1487,168,0 chrXII 171935 . A T 1493 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=66.6891;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;QD=20.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1526,159,0 chrXII 171952 . C T 1437 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.11;MQ0=0;QD=18.66;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1470,156,0 chrXII 171967 . G A 1357 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=34.97;MQ0=0;QD=20.88;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1390,144,0 chrXII 171984 . G A 1080 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.34;MQ0=0;QD=21.18;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1113,114,0 chrXII 171991 . G A 913 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.68;MQ0=0;QD=19.43;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:946,99,0 chrXII 172080 . G A 277 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=18.47;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:33:310,33,0 chrXII 172105 . G T 736 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=23.00;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:81:769,81,0 chrXII 172316 . A G 2360 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.9241;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.37;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2393,261,0 chrXII 172462 . C T 3445.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.76;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3445,372,0 chrXII 173020 . G A 3463.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.8007;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3463,360,0 chrXII 173735 . A G 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-1.237;QD=21.49;ReadPosRankSum=1.677;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2741,300,0 chrXII 173844 . A C 2645 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.1923;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.68;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2678,291,0 chrXII 173861 . T A 2910 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.72;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2943,306,0 chrXII 173892 . A T 3026 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.92;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3059,321,0 chrXII 173948 . C T 2535 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=21.67;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2568,267,0 chrXII 173951 . A G 2346 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.05;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2379,267,0 chrXII 174263 . A G 3998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=172;Dels=0.00;FS=6.203;HaplotypeScore=10.4814;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.792;QD=23.24;ReadPosRankSum=2.421;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:2,167:172:99:3998,429,0 chrXII 174526 . T A 4017.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.8146;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.60;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4017,426,0 chrXII 174894 . G A 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.3720;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.610;QD=23.54;ReadPosRankSum=-0.492;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4190,418,0 chrXII 174938 . A C 3764.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=161;Dels=0.00;FS=3.004;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-1.006;QD=23.38;ReadPosRankSum=2.373;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3764,408,0 chrXII 175067 . A C 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-1.012;QD=24.79;ReadPosRankSum=1.704;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:3157,342,0 chrXII 175138 . G A 2865 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=18.13;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2898,312,0 chrXII 175158 . G A 3028 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=16.73;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3061,330,0 chrXII 175160 . A G 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=4.112;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;MQRankSum=-0.331;QD=16.22;ReadPosRankSum=1.694;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3002,327,0 chrXII 175187 . G A 3313.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=16.57;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:3313,342,0 chrXII 175203 . G A 3066 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=14.74;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:3099,327,0 chrXII 175306 . A G 5120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=209;Dels=0.00;FS=4.295;HaplotypeScore=15.5000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.247;QD=24.50;ReadPosRankSum=1.715;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:5120,552,0 chrXII 175382 . C A 6045.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=6.7008;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=23.71;SB=-3.314e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:6045,655,0 chrXII 175770 . C T 3983.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.02;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3983,420,0 chrXII 175892 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.09;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3082,324,0 chrXII 175946 . T C 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.640;QD=22.08;ReadPosRankSum=1.663;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3312,363,0 chrXII 175979 . T C 3529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=3.037;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.436;QD=21.65;ReadPosRankSum=1.690;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3529,384,0 chrXII 176336 . T C 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.082;QD=22.49;ReadPosRankSum=1.709;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3329,357,0 chrXII 176348 . G T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.26;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3406,357,0 chrXII 176833 . T G 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=185;Dels=0.00;FS=2.581;HaplotypeScore=18.3867;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.401;QD=23.64;ReadPosRankSum=2.907;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:3,180:185:99:4374,471,0 chrXII 177051 . C T 4653.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.1958;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.95;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4653,493,0 chrXII 177754 . G A 3640.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.64;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3640,396,0 chrXII 177778 . C T 4151.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.3594;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.32;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4151,450,0 chrXII 178195 . T C 7072.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=11.1785;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=25.44;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,277:278:99:7072,763,0 chrXII 178246 . G C 6070.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=9.0464;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.57;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:0,244:247:99:6070,652,0 chrXII 178405 . C T 6486.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=4.1207;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.34;SB=-3.124e+03 GT:AD:DP:GQ:PL 1/1:0,304:304:99:6486,685,0 chrXII 178408 . A G 6010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=2.3404;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-1.640;QD=19.90;ReadPosRankSum=1.709;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:1,301:302:99:6010,655,0 chrXII 178531 . T A 4732.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.90;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4732,493,0 chrXII 178573 . C T 4107.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.0849;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.20;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4107,444,0 chrXII 178944 . C T 6719.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=12.7461;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.54;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:0,311:312:99:6719,703,0 chrXII 178986 . A G 5864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.019;DP=276;Dels=0.00;FS=1.981;HaplotypeScore=28.0096;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.609;QD=21.25;ReadPosRankSum=2.698;SB=-3.155e+03 GT:AD:DP:GQ:PL 1/1:4,272:276:99:5864,613,0 chrXII 179029 . A G 5271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=6.5954;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=0.312;QD=22.05;ReadPosRankSum=1.703;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:5271,556,0 chrXII 179034 . A G 4978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.227;DP=239;Dels=0.00;FS=9.085;HaplotypeScore=1.8947;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-0.580;QD=20.83;ReadPosRankSum=3.388;SB=-3.016e+03 GT:AD:DP:GQ:PL 1/1:4,235:239:99:4978,546,0 chrXII 179121 . G T 4150.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.44;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4150,436,0 chrXII 179135 . A G 4015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=210;Dels=0.00;FS=2.815;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=0.300;QD=19.12;ReadPosRankSum=2.426;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:2,207:210:99:4015,435,0 chrXII 179159 . A G 3999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=210;Dels=0.00;FS=3.021;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=-0.832;QD=19.04;ReadPosRankSum=2.414;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:2,206:210:99:3999,429,0 chrXII 179195 . T C 5249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=239;Dels=0.00;FS=3.022;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.539;QD=21.96;ReadPosRankSum=2.429;SB=-3.060e+03 GT:AD:DP:GQ:PL 1/1:2,237:239:99:5249,565,0 chrXII 179265 . A G 4590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.063;DP=216;Dels=0.00;FS=6.800;HaplotypeScore=13.3016;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=-1.392;QD=21.25;ReadPosRankSum=0.733;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:4590,478,0 chrXII 179276 . A C 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=186;Dels=0.00;FS=10.691;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=1.647;QD=22.32;ReadPosRankSum=2.940;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:3,182:186:99:4151,441,0 chrXII 179526 . T A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.89;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3306,348,0 chrXII 179579 . G A 2061 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.08;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2094,222,0 chrXII 179683 . T C 1876 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.16;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1909,204,0 chrXII 179752 . A T 192.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.00;FS=3.321;HaplotypeScore=36.5603;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;MQRankSum=-0.060;QD=3.25;ReadPosRankSum=0.418;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:24:225,24,0 chrXII 179767 . C G,T 121.01 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=9.7331;MLEAC=1,1;MLEAF=0.500,0.500;MQ=44.10;MQ0=0;QD=2.02;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/2:0,37,22:60:77:181,89,77,93,0,81 chrXII 179774 . C T 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.236;DP=57;Dels=0.00;FS=41.831;HaplotypeScore=16.2335;MLEAC=1;MLEAF=0.500;MQ=44.21;MQ0=0;MQRankSum=-3.353;QD=0.77;ReadPosRankSum=0.510;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,20:57:74:74,0,305 chrXII 179807 . T A 796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;MQRankSum=-1.588;QD=16.58;ReadPosRankSum=1.660;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:87:829,87,0 chrXII 179815 . T A 860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.2071;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;MQRankSum=-1.455;QD=17.20;ReadPosRankSum=1.663;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:93:893,93,0 chrXII 179828 . G T 979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=55;Dels=0.00;FS=4.393;HaplotypeScore=7.6978;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;MQRankSum=1.165;QD=17.80;ReadPosRankSum=1.417;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1012,105,0 chrXII 179876 . A T 1537 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.94;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1570,165,0 chrXII 179902 . T C 1692 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4370;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.26;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1725,189,0 chrXII 180474 . G A 5980.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=16.9607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-2.995e+03 GT:AD:DP:GQ:PL 1/1:0,255:258:99:5980,622,0 chrXII 180622 . A G 5865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=282;Dels=0.00;FS=2.929;HaplotypeScore=17.3891;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.145;QD=20.80;ReadPosRankSum=2.423;SB=-3.131e+03 GT:AD:DP:GQ:PL 1/1:2,278:282:99:5865,639,0 chrXII 180683 . T C 6212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.147;DP=284;Dels=0.00;FS=9.124;HaplotypeScore=30.6569;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.372;QD=21.87;ReadPosRankSum=3.369;SB=-3.373e+03 GT:AD:DP:GQ:PL 1/1:4,279:284:99:6212,690,0 chrXII 180796 . G A 5419.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.87;SB=-3.177e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5419,568,0 chrXII 180860 . T C 5253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=233;Dels=0.00;FS=3.222;HaplotypeScore=12.1669;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.727;QD=22.55;ReadPosRankSum=1.702;SB=-2.979e+03 GT:AD:DP:GQ:PL 1/1:1,230:233:99:5253,579,0 chrXII 180920 . C T 6140.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=12.6115;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.83;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:6140,649,0 chrXII 180960 . C A 4726.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.38;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:4726,510,0 chrXII 181052 . C T 5784.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=11.9095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-3.282e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5784,610,0 chrXII 182119 . C T 3057 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.98;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3090,321,0 chrXII 182125 . A G 3063 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.57;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:3096,345,0 chrXII 182230 . T C 3746.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.01;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3746,402,0 chrXII 182314 . T C 3957.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=164;Dels=0.00;FS=3.027;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.757;QD=24.13;ReadPosRankSum=2.405;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3957,432,0 chrXII 182398 . C T 4615.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.67;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4615,495,0 chrXII 182437 . T G 4016.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.31;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4016,450,0 chrXII 182506 . A G 3532.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.35;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3532,399,0 chrXII 182557 . G A 4194.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4194,439,0 chrXII 182854 . G A 3973.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.0840;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.83;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3973,415,0 chrXII 182869 . G A 3890.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=19.55;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3890,423,0 chrXII 183064 . T C 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=186;Dels=0.00;FS=3.082;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-0.123;QD=22.41;ReadPosRankSum=1.675;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4168,447,0 chrXII 183178 . G A 4669.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.62;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4669,498,0 chrXII 183187 . T C 4472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=221;Dels=0.00;FS=7.291;HaplotypeScore=8.9282;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-1.553;QD=20.24;ReadPosRankSum=3.538;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:5,214:221:99:4472,492,0 chrXII 183745 . A G 4104.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.0664;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.06;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4104,438,0 chrXII 184588 . T G 3777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.140;QD=23.03;ReadPosRankSum=1.689;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:3777,414,0 chrXII 184645 . T C 4144.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.96;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4144,447,0 chrXII 185932 . G A 5255.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=7.8609;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.46;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5255,544,0 chrXII 186034 . T C 4875.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=235;Dels=0.00;FS=2.987;HaplotypeScore=5.9651;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=-0.914;QD=20.74;ReadPosRankSum=2.345;SB=-2.906e+03 GT:AD:DP:GQ:PL 1/1:2,233:235:99:4875,526,0 chrXII 186045 . T C 4484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=242;Dels=0.00;FS=2.941;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-1.539;QD=18.53;ReadPosRankSum=2.388;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:2,238:242:99:4484,504,0 chrXII 186083 . C A 4820.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.51;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:4820,511,0 chrXII 186855 . C T 3919.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.0747;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.75;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3919,406,0 chrXII 186882 . A C 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.440;QD=22.74;ReadPosRankSum=1.713;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:4094,438,0 chrXII 186926 . C T 4316.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=23.46;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4316,448,0 chrXII 186972 . G A 3295.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=22.11;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3295,357,0 chrXII 186973 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=22.88;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3363,351,0 chrXII 186987 . T C 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.5186;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=0.317;QD=21.43;ReadPosRankSum=1.708;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3076,336,0 chrXII 187152 . G T 3102 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.39;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,155:160:99:3135,330,0 chrXII 187413 . C T 3644.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.06;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3644,387,0 chrXII 187575 . C T 3664.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3664,384,0 chrXII 187694 . C T 4442.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.9678;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.88;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4442,463,0 chrXII 188197 . A G 3659.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.2887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.31;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3659,399,0 chrXII 188360 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=6.8429;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.53;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2756,279,0 chrXII 188839 . A T 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.540;DP=93;Dels=0.00;FS=3.250;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=0.615;QD=19.72;ReadPosRankSum=1.062;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1867,204,0 chrXII 188842 . A C 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.492;DP=96;Dels=0.00;FS=3.343;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=1.513;QD=19.22;ReadPosRankSum=1.112;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1878,201,0 chrXII 188851 . G A 1885 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.48;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1918,213,0 chrXII 189328 . T C 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.810;DP=164;Dels=0.00;FS=2.566;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.994;QD=23.00;ReadPosRankSum=2.847;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3772,420,0 chrXII 189389 . T G 3975.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.1799;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.84;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3975,423,0 chrXII 189603 . T C 4056.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.79;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4056,441,0 chrXII 189814 . A G 3930.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.6292;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.39;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3930,435,0 chrXII 190001 . T C 3091 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.62;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3124,345,0 chrXII 190285 . C T 3628.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3628,379,0 chrXII 190353 . T C 4207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.947;DP=179;Dels=0.00;FS=10.472;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.647;QD=23.50;ReadPosRankSum=4.115;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:6,173:179:99:4207,462,0 chrXII 190522 . G A 5759.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=13.0142;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.61;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5759,601,0 chrXII 190914 . C T 2649 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2682,276,0 chrXII 191521 . C T 3880.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.4184;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3880,417,0 chrXII 191703 . A C 3531.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.35;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3531,381,0 chrXII 192373 . C T 3674.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.3329;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.33;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3674,387,0 chrXII 192850 . G C 4429.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,190:194:99:4429,480,0 chrXII 193629 . A C 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=3.315;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.294;QD=23.51;ReadPosRankSum=1.673;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2807,309,0 chrXII 193664 . C T 3727.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.52;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3727,388,0 chrXII 193884 . A T 3961.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.7618;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.07;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3961,420,0 chrXII 193924 . C T 3523.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.1203;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.73;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3523,372,0 chrXII 194047 . T C 4233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.6929;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-0.958;QD=22.40;ReadPosRankSum=1.695;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4233,465,0 chrXII 194145 . C G 4696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.843;DP=189;Dels=0.00;FS=3.176;HaplotypeScore=8.0503;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.158;QD=24.85;ReadPosRankSum=-1.528;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4696,489,0 chrXII 194272 . C T 3639.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=21.16;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3639,390,0 chrXII 194277 . T C 3515.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.4304;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=20.20;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3515,378,0 chrXII 194289 . C T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.5974;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=19.00;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3553,384,0 chrXII 194407 . T C 4631.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.9049;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.03;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4631,501,0 chrXII 194691 . A G 5948.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=13.8001;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.08;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5948,666,0 chrXII 194811 . C T 6868.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=26.42;SB=-3.387e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:6868,712,0 chrXII 195525 . C T 2286 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.36;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2319,246,0 chrXII 195537 . G A 2072 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.3516;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.92;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2105,222,0 chrXII 195892 . T C 4717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=225;Dels=0.00;FS=6.521;HaplotypeScore=14.3810;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=1.825;QD=20.96;ReadPosRankSum=2.340;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:2,222:225:99:4717,519,0 chrXII 195920 . C T 5046.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=5.4336;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=19.56;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5046,555,0 chrXII 196093 . T C 3894.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6669;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.25;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3894,417,0 chrXII 196681 . C A 3124 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=22.97;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3157,327,0 chrXII 196718 . G C 2463 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.4356;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=19.70;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2496,273,0 chrXII 196744 . T C 103.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.862;DP=111;Dels=0.00;FS=9.486;HaplotypeScore=65.4185;MLEAC=1;MLEAF=0.500;MQ=46.46;MQ0=0;MQRankSum=-2.638;QD=0.93;ReadPosRankSum=-4.730;SB=-3.377e-02 GT:AD:DP:GQ:PL 0/1:93,17:111:19:133,0,19 chrXII 196845 . A G 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=5.158;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=0.283;QD=21.07;ReadPosRankSum=1.683;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3004,324,0 chrXII 196849 . T C 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.350;DP=145;Dels=0.00;FS=4.965;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.561;QD=20.41;ReadPosRankSum=3.362;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:4,141:145:99:2992,327,0 chrXII 196952 . G A 3774.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.7377;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=24.35;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:3774,394,0 chrXII 196991 . T C 4516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.426;QD=25.66;ReadPosRankSum=1.712;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4516,486,0 chrXII 197801 . A C 5493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=234;Dels=0.00;FS=6.178;HaplotypeScore=16.9548;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.022;QD=23.47;ReadPosRankSum=2.335;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:3,228:234:99:5493,586,0 chrXII 198205 . A G 4868.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=240;Dels=0.00;FS=5.814;HaplotypeScore=14.9608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.257;QD=20.28;ReadPosRankSum=2.861;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:3,235:240:99:4868,558,0 chrXII 198410 . A T 4048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=172;Dels=0.00;FS=2.909;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.603;QD=23.53;ReadPosRankSum=2.391;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:4048,432,0 chrXII 198484 . A C 2659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.185;DP=122;Dels=0.00;FS=3.022;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=1.169;QD=21.80;ReadPosRankSum=2.307;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2692,300,0 chrXII 198564 . A G 2552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.567;QD=22.99;ReadPosRankSum=1.700;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,106:111:99:2585,282,0 chrXII 198641 . C A 2813 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.04;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2846,294,0 chrXII 198744 . C T 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=4.595;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.873;QD=22.31;ReadPosRankSum=0.845;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2755,285,0 chrXII 198763 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.7961;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.18;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3249,336,0 chrXII 199022 . T C 5166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=240;Dels=0.00;FS=3.334;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.197;QD=21.53;ReadPosRankSum=1.703;SB=-2.983e+03 GT:AD:DP:GQ:PL 1/1:1,236:240:99:5166,576,0 chrXII 199043 . A G 5243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=260;Dels=0.00;FS=6.008;HaplotypeScore=6.4989;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.195;QD=20.17;ReadPosRankSum=2.918;SB=-2.952e+03 GT:AD:DP:GQ:PL 1/1:3,255:260:99:5243,585,0 chrXII 199528 . A G 5936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=246;Dels=0.00;FS=4.511;HaplotypeScore=13.5116;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.078;QD=24.13;ReadPosRankSum=1.704;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:1,242:246:99:5936,645,0 chrXII 199567 . C T 4669.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.58;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4669,496,0 chrXII 199705 . G A 4938.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=12.5388;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4938,517,0 chrXII 200284 . C A 4110.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=11.8986;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=24.04;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4110,433,0 chrXII 200338 . G C 3945.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.68;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3945,423,0 chrXII 200350 . A G 4071.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.8678;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.98;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4071,444,0 chrXII 200465 . C T 5523.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=18.9209;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:0,229:232:99:5523,583,0 chrXII 200917 . C T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3411,366,0 chrXII 201288 . A G 5446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=242;Dels=0.00;FS=2.596;HaplotypeScore=16.6431;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.421;QD=22.50;ReadPosRankSum=2.308;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:2,240:242:99:5446,588,0 chrXII 201354 . T G 5194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=222;Dels=0.00;FS=4.130;HaplotypeScore=12.7702;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.149;QD=23.40;ReadPosRankSum=1.685;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:5194,556,0 chrXII 201654 . A G 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=94;Dels=0.00;FS=3.711;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.369;QD=21.78;ReadPosRankSum=1.695;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2080,228,0 chrXII 201658 . T G 2016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=94;Dels=0.00;FS=2.931;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.799;QD=21.45;ReadPosRankSum=2.293;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2049,225,0 chrXII 201693 . A G 1721 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.73;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1754,192,0 chrXII 201727 . T C 1394 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.36;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1427,156,0 chrXII 201879 . G T 1882 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=22.14;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1915,201,0 chrXII 202093 . G A 3576.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=24.00;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3576,393,0 chrXII 202134 . C T 3909.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=22.86;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3909,426,0 chrXII 202261 . G A 5538.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.7944;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=25.06;SB=-2.875e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5538,580,0 chrXII 202651 . G A 2430 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.89;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2463,258,0 chrXII 202775 . A G 2347 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=25.24;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2380,261,0 chrXII 202861 . G C 3982.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=21.07;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3982,438,0 chrXII 202872 . A G 3814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=6.835;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;MQRankSum=-1.014;QD=19.76;ReadPosRankSum=1.714;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:3814,420,0 chrXII 202888 . C T 3614.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=20.08;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3614,375,0 chrXII 202895 . A G 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=186;Dels=0.00;FS=6.261;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=-0.484;QD=18.52;ReadPosRankSum=1.713;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3444,372,0 chrXII 202961 . G A 2158 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=0;QD=16.99;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2191,225,0 chrXII 202970 . C T 2002 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=111.1484;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=0;QD=16.02;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2035,213,0 chrXII 202991 . T C 1695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=3.610;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.57;MQ0=0;MQRankSum=-1.006;QD=13.67;ReadPosRankSum=1.620;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:1728,192,0 chrXII 202999 . C T 1814 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;QD=14.28;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1847,213,0 chrXII 203037 . A T 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.4680;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=0.811;QD=19.89;ReadPosRankSum=1.469;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3175,327,0 chrXII 203202 . T C 2577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.097;DP=112;Dels=0.00;FS=8.860;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=0.431;QD=23.01;ReadPosRankSum=3.347;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:4,108:112:99:2610,285,0 chrXII 203251 . A G 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=120;Dels=0.00;FS=9.994;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=1.830;QD=20.36;ReadPosRankSum=2.367;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2476,279,0 chrXII 203254 . T C 2637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.0047;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=1.034;QD=21.27;ReadPosRankSum=1.648;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2670,288,0 chrXII 203428 . C G 3617.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.04;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3617,396,0 chrXII 203682 . C G 3286.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.3756;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=23.99;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:3286,360,0 chrXII 203732 . T A 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=111;Dels=0.00;FS=8.098;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-0.765;QD=22.95;ReadPosRankSum=2.405;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2580,273,0 chrXII 203753 . G A 2615 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.79;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2648,279,0 chrXII 203834 . T C 3209 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.11;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3242,348,0 chrXII 203841 . T A 3018 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.8888;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.39;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3051,321,0 chrXII 203986 . T C 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=130;Dels=0.00;FS=3.043;HaplotypeScore=7.6316;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=0.407;QD=23.15;ReadPosRankSum=2.393;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3043,327,0 chrXII 204201 . A G 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.348;DP=144;Dels=0.00;FS=13.798;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.339;QD=19.99;ReadPosRankSum=3.372;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:4,139:144:99:2912,327,0 chrXII 204203 . A G 2815 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.55;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2848,315,0 chrXII 204725 . T C 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=154;Dels=0.00;FS=3.067;HaplotypeScore=9.9218;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=1.710;QD=24.61;ReadPosRankSum=1.710;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3790,411,0 chrXII 204809 . T A 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=-0.232;QD=22.35;ReadPosRankSum=1.688;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3532,387,0 chrXII 204907 . T C 4051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.2485;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=-0.513;QD=24.85;ReadPosRankSum=1.668;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:4051,441,0 chrXII 204960 . A G 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=182;Dels=0.01;FS=6.442;HaplotypeScore=5.5674;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=0.143;QD=22.27;ReadPosRankSum=2.395;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4054,432,0 chrXII 204962 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=179;Dels=0.00;FS=6.345;HaplotypeScore=9.9743;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-0.352;QD=22.22;ReadPosRankSum=2.422;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3978,438,0 chrXII 204986 . A G 4314.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.79;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4314,480,0 chrXII 205059 . G A 4541.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=24.03;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4541,472,0 chrXII 205180 . G T 4253.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.9205;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=22.62;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4253,450,0 chrXII 205188 . C T 3895.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=21.05;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:3895,423,0 chrXII 205227 . T C 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=0.570;QD=20.14;ReadPosRankSum=1.593;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3054,336,0 chrXII 205266 . T C 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=142;Dels=0.00;FS=9.198;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-1.165;QD=21.30;ReadPosRankSum=3.385;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:4,138:142:99:3057,324,0 chrXII 205269 . T A 2940 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.56;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2973,315,0 chrXII 205361 . T C 3709.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=22.75;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3709,396,0 chrXII 205368 . A G 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=-1.712;QD=21.22;ReadPosRankSum=1.712;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3692,402,0 chrXII 205389 . A G 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=165;Dels=0.00;FS=6.018;HaplotypeScore=9.7586;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-1.340;QD=18.78;ReadPosRankSum=2.957;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:3,160:165:99:3131,348,0 chrXII 205460 . T A 3905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=163;Dels=0.00;FS=6.551;HaplotypeScore=18.1621;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.359;QD=23.96;ReadPosRankSum=2.358;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3905,409,0 chrXII 205758 . A G 4297.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.5693;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.01;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4297,483,0 chrXII 205872 . A G 3673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.6522;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-1.404;QD=24.49;ReadPosRankSum=1.662;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:3673,396,0 chrXII 205885 . G C 3680.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.59;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3680,396,0 chrXII 205974 . T C 3980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.260;QD=24.72;ReadPosRankSum=1.645;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3980,438,0 chrXII 206056 . C G 3750.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=25.68;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3750,399,0 chrXII 206144 . T C 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.396;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.487;QD=19.99;ReadPosRankSum=1.709;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3092,342,0 chrXII 206153 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=3.263;HaplotypeScore=7.1377;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=0.054;QD=20.63;ReadPosRankSum=1.710;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3280,354,0 chrXII 206894 . C A 4319.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.8943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4319,459,0 chrXII 207033 . C T 3965.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.3224;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=23.74;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3965,412,0 chrXII 207274 . C T 3161 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=22.74;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3194,333,0 chrXII 207288 . G A 3455.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.58;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3455,366,0 chrXII 207372 . T C 3185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.4435;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.468;QD=24.13;ReadPosRankSum=1.679;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3218,351,0 chrXII 207426 . A G 2863 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2896,315,0 chrXII 207526 . G A 3479.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=22.74;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3479,366,0 chrXII 207537 . G A 3342.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=22.13;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3342,348,0 chrXII 207684 . A C 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=140;Dels=0.00;FS=3.209;HaplotypeScore=15.3504;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.233;QD=23.66;ReadPosRankSum=1.655;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:1,133:140:99:3313,366,0 chrXII 207885 . C T 4076.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.41;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4076,421,0 chrXII 207908 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.27;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3268,363,0 chrXII 207990 . G A 2318 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.27;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2351,252,0 chrXII 208056 . T C 2801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=129;Dels=0.00;FS=8.645;HaplotypeScore=18.7093;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.039;QD=21.71;ReadPosRankSum=2.373;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2834,315,0 chrXII 208218 . G T 4207.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.34;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4207,439,0 chrXII 208290 . G A 3685.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.32;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3685,387,0 chrXII 208353 . A G 2721 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.77;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2754,300,0 chrXII 208422 . C T 3091 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.92;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3124,345,0 chrXII 208514 . T C 1879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=85;Dels=0.00;FS=5.969;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-1.690;QD=22.11;ReadPosRankSum=1.690;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:1,82:85:99:1912,204,0 chrXII 208550 . C T 1843 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.33;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1876,195,0 chrXII 208651 . G A 1494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.031;DP=83;Dels=0.00;FS=5.250;HaplotypeScore=74.1090;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;MQRankSum=2.137;QD=18.00;ReadPosRankSum=0.882;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:4,79:83:91:1527,91,0 chrXII 208751 . A G 1769 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=19.44;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1802,195,0 chrXII 208796 . T C 1625 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=18.06;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1658,177,0 chrXII 208797 . T C 1573 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=17.67;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1606,174,0 chrXII 209540 . A G 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=3.563;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.882;QD=23.54;ReadPosRankSum=1.710;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3767,420,0 chrXII 209708 . T C 4455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=190;Dels=0.00;FS=6.136;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.601;QD=23.45;ReadPosRankSum=2.411;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4455,492,0 chrXII 209847 . G A 4029.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.5743;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.38;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4029,441,0 chrXII 210023 . C G 3852.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.49;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3852,414,0 chrXII 210043 . G A 3688.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.49;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3688,385,0 chrXII 210102 . T C 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.382;QD=22.80;ReadPosRankSum=1.707;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3134,336,0 chrXII 210299 . A G 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=9.0311;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=0.424;QD=22.02;ReadPosRankSum=1.708;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3204,351,0 chrXII 210476 . A G 3300.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.81;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3300,354,0 chrXII 210527 . G A 3619.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.91;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3619,378,0 chrXII 210539 . A G 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=3.587;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=0.461;QD=20.11;ReadPosRankSum=1.650;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3419,369,0 chrXII 210560 . A G 3111 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=18.52;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3144,339,0 chrXII 210572 . G A 2982 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=18.07;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3015,315,0 chrXII 210638 . A G 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=-1.248;QD=17.81;ReadPosRankSum=1.681;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2508,276,0 chrXII 210644 . C T 2719 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=19.70;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2752,285,0 chrXII 210791 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.7934;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=22.92;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2967,312,0 chrXII 211019 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=21.67;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3511,367,0 chrXII 211028 . T A 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;MQRankSum=0.363;QD=19.76;ReadPosRankSum=1.711;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3300,348,0 chrXII 211045 . A G 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.4275;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=0.371;QD=18.81;ReadPosRankSum=1.670;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3231,351,0 chrXII 211130 . A C 5017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.331;DP=219;Dels=0.00;FS=12.328;HaplotypeScore=20.1003;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.052;QD=22.91;ReadPosRankSum=3.420;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:4,212:219:99:5017,552,0 chrXII 211190 . A G 3792.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7442;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=24.31;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3792,414,0 chrXII 211217 . G A 3444.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=22.51;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3444,363,0 chrXII 211226 . C T 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;MQRankSum=-0.925;QD=20.50;ReadPosRankSum=1.495;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3046,315,0 chrXII 212026 . G A 1713 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.02;FS=0.000;HaplotypeScore=81.3518;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=17.30;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1746,192,0 chrXII 212081 . G A 2338 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.2149;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.25;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2371,249,0 chrXII 212683 . T C 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.623;QD=21.91;ReadPosRankSum=1.709;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3418,375,0 chrXII 212873 . A G 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.517;QD=23.34;ReadPosRankSum=1.637;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3384,366,0 chrXII 213037 . T C 2581 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.04;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2614,288,0 chrXII 213069 . C G 3136 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.72;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3169,339,0 chrXII 213226 . T C 3021 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.06;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3054,339,0 chrXII 213278 . C T 2565 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=21.92;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2598,273,0 chrXII 213307 . C T 2058 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=16.60;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2091,219,0 chrXII 213308 . G T 2000 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=16.26;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2033,216,0 chrXII 213334 . G A 2410 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=18.98;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2443,255,0 chrXII 213371 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=19.28;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2809,303,0 chrXII 213413 . C T 3024 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.30;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3057,318,0 chrXII 213421 . A G 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=136;Dels=0.00;FS=3.043;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-1.065;QD=20.53;ReadPosRankSum=2.377;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2825,286,0 chrXII 213585 . T C 2701 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.70;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2734,291,0 chrXII 213659 . T C 2439 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.97;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2472,267,0 chrXII 213996 . A G 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=4.409;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.728;QD=23.01;ReadPosRankSum=1.707;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3231,354,0 chrXII 214228 . A G 4160.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.98;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4160,465,0 chrXII 214283 . G A 4352.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.92;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4352,474,0 chrXII 214310 . A G 3903.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.45;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3903,429,0 chrXII 214500 . G A 4019.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=24.36;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4019,418,0 chrXII 214592 . C T 4188.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=25.85;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4188,442,0 chrXII 214673 . A G 2552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=135;Dels=0.00;FS=3.031;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;MQRankSum=-1.612;QD=18.90;ReadPosRankSum=2.413;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2585,279,0 chrXII 214692 . T A 1560 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.02;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=33.78;MQ0=0;QD=12.48;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1593,183,0 chrXII 214693 . G A 1458 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=33.49;MQ0=0;QD=11.76;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1491,180,0 chrXII 214696 . A G 1433 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.155;DP=134;Dels=0.00;FS=16.820;HaplotypeScore=2.9748;MLEAC=2;MLEAF=1.00;MQ=33.48;MQ0=0;MQRankSum=-2.991;QD=10.69;ReadPosRankSum=4.540;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:8,126:134:99:1466,161,0 chrXII 214703 . T C 2033 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.9748;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=15.17;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2066,225,0 chrXII 214706 . T A 2156 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.9748;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;QD=15.97;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2189,228,0 chrXII 214730 . G A 2119 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=42.12;MQ0=0;QD=15.93;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2152,225,0 chrXII 214737 . A G 2158 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=15.75;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2191,237,0 chrXII 214840 . T C 3351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=142;Dels=0.00;FS=6.429;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=0.355;QD=23.60;ReadPosRankSum=2.294;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3351,366,0 chrXII 214850 . T C 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=3.305;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;MQRankSum=0.994;QD=22.95;ReadPosRankSum=1.704;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2833,312,0 chrXII 214867 . A G 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=3.358;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=40.51;MQ0=0;MQRankSum=-0.518;QD=22.41;ReadPosRankSum=1.703;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2700,297,0 chrXII 215008 . T C 3808.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=26.63;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3808,408,0 chrXII 220751 . A T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.46;MQ0=4;MQRankSum=1.380;QD=1.32;ReadPosRankSum=1.380;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:6,4:10:43:43,0,96 chrXII 220801 . C T 70.11 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.42;MQ0=5;MQRankSum=0.000;QD=6.37;ReadPosRankSum=1.380;SB=-1.131e-01 GT:AD:DP:GQ:PL 0/1:7,4:11:13:100,0,13 chrXII 220802 . A T 70.09 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.42;MQ0=5;MQRankSum=-0.720;QD=6.37;ReadPosRankSum=1.380;SB=-9.177e-02 GT:AD:DP:GQ:PL 0/1:7,4:11:14:100,0,14 chrXII 220961 . A G 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.51;MQ0=5;MQRankSum=-1.380;QD=0.95;ReadPosRankSum=-1.380;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:9,2:11:40:40,0,73 chrXII 220965 . A G 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.51;MQ0=5;MQRankSum=-1.380;QD=1.29;ReadPosRankSum=-1.380;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:9,2:11:44:44,0,69 chrXII 220970 . T C 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.51;MQ0=5;MQRankSum=-1.380;QD=0.95;ReadPosRankSum=-1.380;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:9,2:11:40:40,0,74 chrXII 220979 . A T 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.51;MQ0=5;MQRankSum=-1.380;QD=0.95;ReadPosRankSum=-1.380;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:9,2:11:40:40,0,72 chrXII 221004 . C T 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=9.8971;MLEAC=1;MLEAF=0.500;MQ=36.39;MQ0=2;MQRankSum=-0.124;QD=1.61;ReadPosRankSum=-2.601;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:7,16:23:67:67,0,86 chrXII 221188 . A G 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=3.505;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;MQRankSum=-0.400;QD=19.30;ReadPosRankSum=1.705;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2561,279,0 chrXII 221190 . C T 2570 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=19.04;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2603,279,0 chrXII 221368 . A G 3913.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=24.61;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3913,423,0 chrXII 221376 . A G 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=3.146;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=0.648;QD=22.46;ReadPosRankSum=1.668;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3683,396,0 chrXII 221392 . T A 4366.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=23.73;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4366,457,0 chrXII 221630 . A T 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=166;Dels=0.00;FS=2.761;HaplotypeScore=11.0372;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.679;QD=20.39;ReadPosRankSum=2.343;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3384,369,0 chrXII 221668 . A G 3543.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.71;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3543,384,0 chrXII 221843 . C T 2178 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2211,237,0 chrXII 222046 . C T 2466 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.2593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2499,258,0 chrXII 222430 . T C 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=3.051;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.277;QD=24.56;ReadPosRankSum=2.404;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2685,288,0 chrXII 222469 . T A 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=105;Dels=0.00;FS=2.985;HaplotypeScore=3.5598;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.129;QD=25.43;ReadPosRankSum=2.309;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2703,282,0 chrXII 223066 . C T 124.13 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=124.2055;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=0.85;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:18:157,18,0 chrXII 223100 . G A 3544.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.97;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3544,378,0 chrXII 223258 . T C 3479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=0.267;QD=23.35;ReadPosRankSum=1.662;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3479,375,0 chrXII 223315 . T C 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=173;Dels=0.00;FS=2.957;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=0.582;QD=20.97;ReadPosRankSum=2.421;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:3628,396,0 chrXII 223337 . C T 3941.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.88;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3941,409,0 chrXII 223519 . A G 4625.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=25.69;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4625,495,0 chrXII 223716 . A C 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.000;QD=23.47;ReadPosRankSum=1.705;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3084,336,0 chrXII 223729 . G A 2917 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=22.27;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2950,300,0 chrXII 223737 . A G 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.951;QD=20.92;ReadPosRankSum=1.706;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2816,303,0 chrXII 223946 . T C 3579.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=24.18;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3579,393,0 chrXII 223973 . T C 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=155;Dels=0.00;FS=2.844;HaplotypeScore=8.0748;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=1.562;QD=23.10;ReadPosRankSum=2.418;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3580,393,0 chrXII 224006 . G A 3178 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=21.92;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3211,336,0 chrXII 224037 . G A 3667.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.06;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3667,381,0 chrXII 224137 . T C 3933.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=179;Dels=0.00;FS=9.179;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=-0.118;QD=21.97;ReadPosRankSum=2.961;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:3933,438,0 chrXII 224139 . C T 4186.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=23.13;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4186,436,0 chrXII 224193 . C T 3739.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=21.87;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3739,388,0 chrXII 224218 . T A 3474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.273;DP=160;Dels=0.00;FS=13.351;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.388;QD=21.71;ReadPosRankSum=3.328;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:4,156:160:99:3474,361,0 chrXII 224239 . G A 3612.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.43;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3612,378,0 chrXII 224318 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.68;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3671,399,0 chrXII 224592 . G A 2432 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.7333;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.94;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2465,255,0 chrXII 224760 . C T 1803 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1836,192,0 chrXII 225174 . T C 3926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=179;Dels=0.00;FS=16.661;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=2.494;QD=21.93;ReadPosRankSum=2.960;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:3,174:179:99:3926,426,0 chrXII 225226 . T C 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.704;DP=174;Dels=0.00;FS=13.941;HaplotypeScore=20.7275;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.169;QD=21.36;ReadPosRankSum=2.960;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:3,170:174:99:3717,402,0 chrXII 225405 . A T 2669 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.3339;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.62;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2702,288,0 chrXII 225447 . T C 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.768;QD=22.86;ReadPosRankSum=1.706;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3073,333,0 chrXII 225676 . G C 3028 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.77;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,128:133:99:3061,324,0 chrXII 225795 . T C 3773.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.67;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3773,408,0 chrXII 225831 . T G 3354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=146;Dels=0.00;FS=3.131;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.285;QD=22.97;ReadPosRankSum=1.708;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3354,360,0 chrXII 225921 . C T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.78;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3448,357,0 chrXII 225953 . A G 3223.06 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.87;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3256,351,0 chrXII 225993 . A T 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.1557;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.666;QD=24.27;ReadPosRankSum=1.705;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3188,333,0 chrXII 226047 . G A 3196 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.5983;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3229,348,0 chrXII 226119 . T C 3457.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.17;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3457,378,0 chrXII 226142 . G T 3473.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.95;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3473,360,0 chrXII 226242 . T C 2984 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.95;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3017,336,0 chrXII 226438 . A G 3679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=157;Dels=0.00;FS=10.928;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=1.097;QD=23.43;ReadPosRankSum=2.955;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:3679,399,0 chrXII 226485 . T C 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.062;QD=23.25;ReadPosRankSum=1.704;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2939,318,0 chrXII 226560 . T C 3545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=155;Dels=0.00;FS=7.322;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.801;QD=22.87;ReadPosRankSum=2.354;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3545,396,0 chrXII 226605 . T C 3627.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.96;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3627,399,0 chrXII 226728 . C A 4188.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.38;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4188,436,0 chrXII 226803 . G A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=23.56;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3392,349,0 chrXII 226806 . A G 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.612;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.433;QD=20.89;ReadPosRankSum=-0.168;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3062,314,0 chrXII 227193 . T C 2337 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2370,258,0 chrXII 227328 . C T 2366 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.14;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2399,249,0 chrXII 227856 . T C 3199 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9191;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.70;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3232,351,0 chrXII 228303 . T C 4902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=206;Dels=0.00;FS=5.517;HaplotypeScore=11.0233;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.098;QD=23.80;ReadPosRankSum=2.917;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:3,203:206:99:4902,531,0 chrXII 228348 . T C 4192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=187;Dels=0.00;FS=3.719;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.509;QD=22.42;ReadPosRankSum=1.676;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4192,471,0 chrXII 228420 . C T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.6634;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.19;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3311,348,0 chrXII 228510 . A G 3818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.019;QD=20.42;ReadPosRankSum=1.713;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3818,423,0 chrXII 228527 . A G 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=164;Dels=0.00;FS=2.585;HaplotypeScore=7.2393;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=0.537;QD=21.06;ReadPosRankSum=2.932;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:3,160:164:99:3454,384,0 chrXII 228807 . C T 1479 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.25;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1512,156,0 chrXII 228852 . C T 2311 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.6671;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.34;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2344,243,0 chrXII 228889 . T C 2815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.407;QD=23.86;ReadPosRankSum=2.158;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2848,312,0 chrXII 229054 . C T 4067.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=25.90;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4067,418,0 chrXII 229120 . T G 4215.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.73;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4215,465,0 chrXII 229136 . T G 4142.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.39;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4142,453,0 chrXII 229166 . T C 4012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.1349;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.227;QD=20.79;ReadPosRankSum=1.642;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4012,441,0 chrXII 229358 . G A 4863.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=25.87;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4863,508,0 chrXII 229498 . A T 4598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=191;Dels=0.00;FS=2.832;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.956;QD=24.07;ReadPosRankSum=2.424;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4598,495,0 chrXII 229583 . T G 2822 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=20.60;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,132:137:99:2855,306,0 chrXII 229597 . T G 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=3.900;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;MQRankSum=0.526;QD=21.61;ReadPosRankSum=-0.423;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2951,321,0 chrXII 229618 . T C 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=4.478;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.908;QD=20.59;ReadPosRankSum=1.708;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,142:146:99:3039,327,0 chrXII 229623 . A G 2868 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.09;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2901,318,0 chrXII 229921 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=27.28;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2952,306,0 chrXII 230005 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.36;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2670,279,0 chrXII 230030 . C T 2629 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.06;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2662,279,0 chrXII 230173 . G A 4459.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,174:178:99:4459,466,0 chrXII 230210 . G A 4454.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.88;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4454,471,0 chrXII 230777 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=14.3864;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3235,336,0 chrXII 230960 . T C 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=119;Dels=0.00;FS=6.124;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.839;QD=22.07;ReadPosRankSum=2.890;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2659,297,0 chrXII 231044 . G A 3825.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.8819;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.21;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3825,417,0 chrXII 231281 . A T 2618 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.8350;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=25.17;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2651,276,0 chrXII 231306 . C A 2366 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=25.72;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2399,249,0 chrXII 231403 . G A 2473 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=5.2848;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=26.59;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2506,258,0 chrXII 231430 . T C 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.827;QD=24.49;ReadPosRankSum=1.614;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2188,240,0 chrXII 231692 . T C 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.726;QD=25.43;ReadPosRankSum=2.418;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3942,426,0 chrXII 232046 . A G 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=-0.489;QD=20.82;ReadPosRankSum=1.706;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2802,315,0 chrXII 232063 . G T 3144 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=21.68;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3177,330,0 chrXII 232208 . C T 1005 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=16.7731;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=9.14;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1038,108,0 chrXII 232216 . G A 1167 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=11.0227;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;QD=10.61;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1200,129,0 chrXII 232217 . T G 1139 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.2331;MLEAC=2;MLEAF=1.00;MQ=31.07;MQ0=0;MQRankSum=0.472;QD=10.26;ReadPosRankSum=1.701;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:1172,126,0 chrXII 232561 . A G 5811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=258;Dels=0.00;FS=3.904;HaplotypeScore=9.7105;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.692;QD=22.52;ReadPosRankSum=1.652;SB=-2.877e+03 GT:AD:DP:GQ:PL 1/1:1,257:258:99:5811,639,0 chrXII 232616 . T A 6411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=287;Dels=0.00;FS=7.681;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.306;QD=22.34;ReadPosRankSum=2.398;SB=-3.069e+03 GT:AD:DP:GQ:PL 1/1:2,285:287:99:6411,688,0 chrXII 232935 . C T 4644.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4644,493,0 chrXII 237814 . C T 2706 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2739,297,0 chrXII 238533 . A G 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=3.176;HaplotypeScore=7.4300;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-1.234;QD=18.23;ReadPosRankSum=1.689;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2950,321,0 chrXII 238919 . G C 3770.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.71;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3770,414,0 chrXII 238995 . G A 3728.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.16;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3728,390,0 chrXII 239011 . G T 3592.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.73;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3592,373,0 chrXII 239186 . A G 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=13.5312;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.801;QD=20.23;ReadPosRankSum=1.703;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2461,279,0 chrXII 239886 . G A 3045 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.9510;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.79;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3078,321,0 chrXII 239963 . T C 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=160;Dels=0.00;FS=6.048;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.438;QD=22.39;ReadPosRankSum=2.419;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3583,387,0 chrXII 240031 . G A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3471,378,0 chrXII 240159 . G A 3007 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3398;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.68;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3040,312,0 chrXII 240178 . T C 2832 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.60;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2865,306,0 chrXII 240751 . G A 4102.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=23.99;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4102,421,0 chrXII 240778 . G A 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.287;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.9889;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.917;QD=20.24;ReadPosRankSum=0.584;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3825,395,0 chrXII 240793 . G A 4160.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=21.01;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4160,430,0 chrXII 241842 . A G 4023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=176;Dels=0.00;FS=9.342;HaplotypeScore=12.0860;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;MQRankSum=-0.636;QD=22.86;ReadPosRankSum=2.421;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:2,171:176:99:4023,453,0 chrXII 242101 . C G 3493.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.97;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3493,381,0 chrXII 242737 . T C 4279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=179;Dels=0.00;FS=5.581;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.034;QD=23.91;ReadPosRankSum=2.904;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:3,175:179:99:4279,471,0 chrXII 242983 . G A 3632.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.53;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3632,378,0 chrXII 243670 . T C 492 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=15.37;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:57:525,57,0 chrXII 243704 . A T 419 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=19.05;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:48:452,48,0 chrXII 243705 . T C 379 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=17.23;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,21:22:45:412,45,0 chrXII 243711 . G A 402 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=16.75;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:45:435,45,0 chrXII 243795 . T C 420 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.26;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:51:453,51,0 chrXII 244615 . G A 2606 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.90;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2639,276,0 chrXII 250711 . G A 3031 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.96;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3064,321,0 chrXII 252507 . A G 6790.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=30.2378;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.33;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,286:291:99:6790,738,0 chrXII 252615 . T G 8009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.721;DP=353;Dels=0.00;FS=12.123;HaplotypeScore=25.1840;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.449;QD=22.69;ReadPosRankSum=3.811;SB=-4.367e+03 GT:AD:DP:GQ:PL 1/1:5,344:353:99:8009,891,0 chrXII 252766 . T A 15408.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=634;Dels=0.00;FS=0.000;HaplotypeScore=40.6221;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.276;QD=24.30;ReadPosRankSum=1.688;SB=-4.646e+03 GT:AD:DP:GQ:PL 1/1:1,632:634:99:15408,1619,0 chrXII 252889 . G C 9652.01 filter AC=2;AF=1.00;AN=2;DP=570;Dels=0.00;FS=0.000;HaplotypeScore=27.8139;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=16.93;SB=-6.097e+03 GT:AD:DP:GQ:PL 1/1:0,569:570:99:9652,1066,0 chrXII 253977 . G A 3863.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3863,426,0 chrXII 254321 . T C 8021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=340;Dels=0.00;FS=2.996;HaplotypeScore=16.0472;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.633;QD=23.59;ReadPosRankSum=2.363;SB=-4.345e+03 GT:AD:DP:GQ:PL 1/1:2,337:340:99:8021,868,0 chrXII 255647 . T C 5521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=243;Dels=0.00;FS=7.193;HaplotypeScore=18.0161;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.076;QD=22.72;ReadPosRankSum=2.429;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:2,240:243:99:5521,624,0 chrXII 255736 . T C 4331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=211;Dels=0.00;FS=4.212;HaplotypeScore=6.7148;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.519;QD=20.53;ReadPosRankSum=1.716;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:4331,477,0 chrXII 257316 . G T 4648.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=23.01;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:0,198:202:99:4648,484,0 chrXII 257334 . A G 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.01;FS=3.192;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-0.983;QD=21.34;ReadPosRankSum=1.692;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3670,387,0 chrXII 257358 . G A 3530.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.9132;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.76;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3530,372,0 chrXII 257474 . T A 3870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.303;DP=189;Dels=0.00;FS=14.690;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-1.104;QD=20.48;ReadPosRankSum=3.377;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:4,185:189:99:3870,411,0 chrXII 257484 . T G 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=189;Dels=0.00;FS=7.050;HaplotypeScore=7.7159;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=1.075;QD=19.93;ReadPosRankSum=2.423;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:2,182:189:99:3766,420,0 chrXII 257504 . A G 3667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=188;Dels=0.00;FS=2.899;HaplotypeScore=5.9643;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=0.650;QD=19.51;ReadPosRankSum=2.410;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:3667,408,0 chrXII 257580 . A T 4217.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=25.10;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4217,439,0 chrXII 257654 . A G 5212.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.0147;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=25.06;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:5212,567,0 chrXII 257711 . C T 4309.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=25.96;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4309,445,0 chrXII 257813 . A G 4259.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.79;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4259,465,0 chrXII 258538 . G A 4138.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.37;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4138,430,0 chrXII 258832 . A C 3162 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=16.13;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:3195,348,0 chrXII 259455 . C T 4924.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.7778;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.26;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4924,514,0 chrXII 260130 . C G 7455.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=27.2045;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.52;SB=-2.834e+03 GT:AD:DP:GQ:PL 1/1:0,328:331:99:7455,825,0 chrXII 262055 . C T 6158.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=31.1997;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.64;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,270:272:99:6158,652,0 chrXII 262532 . G A 4136.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=21.9736;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.50;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4136,433,0 chrXII 262933 . T C 1772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=79;Dels=0.00;FS=2.608;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-0.090;QD=22.43;ReadPosRankSum=2.911;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:3,76:79:99:1805,195,0 chrXII 262942 . T A 1722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.757;DP=80;Dels=0.01;FS=5.462;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=0.577;QD=21.52;ReadPosRankSum=2.886;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:3,76:79:99:1755,180,0 chrXII 262957 . T C 1653 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=22.64;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1686,183,0 chrXII 263142 . G C 2834 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=23.23;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2867,309,0 chrXII 263151 . C T 2971 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=23.39;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3004,318,0 chrXII 263219 . A C 3092 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=21.18;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3125,339,0 chrXII 263230 . C T 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=3.454;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-1.684;QD=22.76;ReadPosRankSum=0.601;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3278,340,0 chrXII 264101 . T C 199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.129;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=1;MQRankSum=2.023;QD=6.03;ReadPosRankSum=0.818;SB=-9.602e+01 GT:AD:DP:GQ:PL 1/1:6,27:33:30:232,30,0 chrXII 264870 . G A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.57;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3889,426,0 chrXII 265628 . C T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3458,369,0 chrXII 266230 . G A 3457.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3457,363,0 chrXII 266689 . A G 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=154;Dels=0.00;FS=4.415;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.687;QD=24.99;ReadPosRankSum=1.687;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3849,420,0 chrXII 266899 . C T 3515.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=14.3735;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.70;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3515,375,0 chrXII 266973 . G A 3053 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.20;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3086,333,0 chrXII 269206 . T C 4508.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4508,501,0 chrXII 269565 . A G 6030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=252;Dels=0.00;FS=8.411;HaplotypeScore=13.6662;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.073;QD=23.93;ReadPosRankSum=2.430;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:2,250:252:99:6030,675,0 chrXII 272455 . C T 4722.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.6517;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.09;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4722,496,0 chrXII 274041 . A G 406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.375;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=0.896;QD=14.00;ReadPosRankSum=1.614;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,28:29:48:439,48,0 chrXII 274243 . G C 3099 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3132,342,0 chrXII 274292 . C T 4735.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.3549;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.73;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4735,484,0 chrXII 274580 . G C 4866.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=21.8619;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4866,531,0 chrXII 275287 . C T 2655 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2688,279,0 chrXII 276224 . A G 3530.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2141;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.51;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3530,381,0 chrXII 277574 . C T 3204 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3237,348,0 chrXII 278475 . T A 4082.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.9764;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.95;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4082,427,0 chrXII 278491 . C T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=20.75;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3589,396,0 chrXII 278546 . C G 3318.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=16.6348;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=18.96;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3318,363,0 chrXII 279272 . C T 3720.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3720,385,0 chrXII 279310 . T C 3081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=150;Dels=0.00;FS=3.030;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.263;QD=20.54;ReadPosRankSum=2.331;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:2,144:150:99:3114,342,0 chrXII 279680 . C T 5581.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=14.6141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5581,595,0 chrXII 279869 . C T 7092.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=11.6841;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-3.406e+03 GT:AD:DP:GQ:PL 1/1:0,295:296:99:7092,766,0 chrXII 279986 . A G 6364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=14.6975;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.919;QD=20.33;ReadPosRankSum=2.410;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:2,308:313:99:6364,699,0 chrXII 280412 . G A 4425.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.00;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4425,451,0 chrXII 281655 . A G 2667 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.22;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2700,294,0 chrXII 281681 . A G 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.233;QD=22.17;ReadPosRankSum=1.677;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2804,309,0 chrXII 282215 . C T 6067.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=17.1727;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.31;SB=-3.007e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:6067,628,0 chrXII 282385 . A G 3397.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.4884;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.84;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3397,369,0 chrXII 282687 . T C 739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=85;Dels=0.04;FS=6.964;HaplotypeScore=273.4769;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;MQRankSum=-0.206;QD=8.69;ReadPosRankSum=-0.716;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:6,76:82:93:772,93,0 chrXII 282741 . G A 1304 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=16.94;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1337,138,0 chrXII 282888 . C T 3054 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.14;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3087,333,0 chrXII 283719 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.98;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2831,297,0 chrXII 284270 . A G 4433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=187;Dels=0.00;FS=3.034;HaplotypeScore=8.4384;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.627;QD=23.71;ReadPosRankSum=2.370;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4433,483,0 chrXII 284813 . T C 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.800;DP=171;Dels=0.00;FS=16.944;HaplotypeScore=11.4985;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.387;QD=23.61;ReadPosRankSum=3.781;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:5,166:171:99:4038,450,0 chrXII 284942 . G A 4305.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.19;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4305,462,0 chrXII 284957 . G A 4018.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.71;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4018,418,0 chrXII 284978 . C T 3759.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.11;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3759,394,0 chrXII 286896 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=21.20;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3668,382,0 chrXII 286897 . C T 3595.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=21.02;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3595,378,0 chrXII 287267 . C T 4434.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.36;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4434,471,0 chrXII 287338 . G C 4151.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.68;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4151,447,0 chrXII 289538 . G A 3599.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.35;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3599,376,0 chrXII 289698 . G A 5303.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=15.2555;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.06;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:0,226:230:99:5303,550,0 chrXII 290359 . T C 3327.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.20;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3327,363,0 chrXII 291216 . G A 3797.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.57;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3797,414,0 chrXII 291384 . A G 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.472;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=0.309;QD=20.36;ReadPosRankSum=1.678;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2660,288,0 chrXII 291386 . A G 2470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=3.556;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-1.241;QD=19.45;ReadPosRankSum=1.705;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2503,279,0 chrXII 291459 . T C 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=191;Dels=0.00;FS=6.089;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.405;QD=20.70;ReadPosRankSum=2.424;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:3953,429,0 chrXII 291912 . G A 2648 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.03;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2681,279,0 chrXII 292618 . G C 3507.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3507,390,0 chrXII 293054 . C T 3786.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3786,402,0 chrXII 293839 . C T 2752 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.72;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2785,291,0 chrXII 293917 . T C 2544 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2577,282,0 chrXII 294033 . G A 2351 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.75;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2384,243,0 chrXII 294289 . G A 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.716;QD=23.82;ReadPosRankSum=-0.670;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:1,151:156:99:3716,390,0 chrXII 294637 . G A 3802.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.6473;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.91;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3802,397,0 chrXII 294655 . T G 3991.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.90;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3991,429,0 chrXII 295045 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.79;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3426,366,0 chrXII 295063 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.33;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3327,372,0 chrXII 295222 . C T 5715.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=26.22;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5715,589,0 chrXII 295250 . T C 5293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.6568;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.441;QD=24.85;ReadPosRankSum=1.716;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:5293,571,0 chrXII 295292 . C T 6098.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.19;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:6098,634,0 chrXII 295360 . C T 6529.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.45;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:6529,688,0 chrXII 295930 . T C 4817.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=16.7568;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.45;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4817,516,0 chrXII 296083 . T A 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=5.576;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.266;QD=23.11;ReadPosRankSum=1.679;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3060,321,0 chrXII 296228 . A G 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-1.604;QD=21.48;ReadPosRankSum=1.689;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1794,198,0 chrXII 296236 . C A 1701 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.68;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1734,180,0 chrXII 296473 . C T 1896 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7853;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=25.28;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1929,210,0 chrXII 296854 . T A 4383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=178;Dels=0.00;FS=4.116;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.000;QD=24.62;ReadPosRankSum=1.674;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4383,460,0 chrXII 297011 . A T 4167.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=21.1850;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.95;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4167,450,0 chrXII 297157 . G T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=24.50;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3430,357,0 chrXII 297293 . T C 3773.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.73;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3773,402,0 chrXII 297445 . G C 3856.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.5363;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3856,414,0 chrXII 298010 . C T 4581.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4581,475,0 chrXII 298142 . T C 4205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=171;Dels=0.00;FS=6.798;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.672;QD=24.59;ReadPosRankSum=2.392;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:4205,465,0 chrXII 298405 . C T 4286.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.36;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4286,445,0 chrXII 298644 . A G 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=162;Dels=0.00;FS=3.403;HaplotypeScore=11.8206;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.342;QD=23.06;ReadPosRankSum=1.711;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3735,408,0 chrXII 298872 . A G 5311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=247;Dels=0.00;FS=10.916;HaplotypeScore=15.7969;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.180;QD=21.50;ReadPosRankSum=2.972;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:3,243:247:99:5311,574,0 chrXII 298908 . C T 5941.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=10.6888;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.76;SB=-3.116e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:5941,619,0 chrXII 298998 . G A 4116.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4116,433,0 chrXII 299037 . A G 4633.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.85;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4633,522,0 chrXII 299174 . A G 4042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=179;Dels=0.00;FS=3.024;HaplotypeScore=12.1084;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.199;QD=22.58;ReadPosRankSum=2.354;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4042,438,0 chrXII 299209 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3380,354,0 chrXII 299315 . G T 4479.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=18.9549;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.82;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4479,469,0 chrXII 299526 . A C 3120 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.2548;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.22;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3153,348,0 chrXII 299532 . A G 3048 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.46;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3081,333,0 chrXII 300539 . T C 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.629;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.199;QD=24.78;ReadPosRankSum=1.701;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2833,306,0 chrXII 300802 . C T 5230.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.2127;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.90;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5230,544,0 chrXII 300946 . A G 5136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=240;Dels=0.00;FS=5.702;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.029;QD=21.40;ReadPosRankSum=2.887;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:3,236:240:99:5136,567,0 chrXII 301123 . G A 5027.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.76;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5027,520,0 chrXII 301291 . G A 4138.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.37;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4138,444,0 chrXII 302100 . G A 4895.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=21.95;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4895,505,0 chrXII 302139 . T C 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;MQRankSum=-0.747;QD=14.46;ReadPosRankSum=1.609;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:1,197:200:99:2926,321,0 chrXII 302144 . T C 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=202;Dels=0.00;FS=2.984;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.07;MQ0=0;MQRankSum=-1.020;QD=14.23;ReadPosRankSum=2.413;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:2908,321,0 chrXII 302154 . C T 3117 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=15.35;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3150,324,0 chrXII 302196 . C G 3826.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.4982;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=19.32;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3826,426,0 chrXII 302282 . T G 4391.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.2870;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.36;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4391,480,0 chrXII 302332 . T A 4843.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=20.4397;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=24.22;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4843,505,0 chrXII 302440 . A G 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=18.2176;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.354;QD=22.57;ReadPosRankSum=1.669;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3770,417,0 chrXII 302671 . G C 4028.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.28;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4028,438,0 chrXII 302717 . C T 4104.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.3894;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.38;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4104,430,0 chrXII 302719 . A G 3987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=3.834;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.898;QD=20.87;ReadPosRankSum=1.696;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3987,438,0 chrXII 302764 . A T 4053.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.22;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4053,421,0 chrXII 303103 . G A 3774.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.16;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3774,397,0 chrXII 303358 . G A 2731 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.60;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2764,279,0 chrXII 303553 . G A 2368 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.93;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2401,249,0 chrXII 303878 . A G 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=128;Dels=0.00;FS=3.079;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.245;QD=22.74;ReadPosRankSum=1.705;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2944,318,0 chrXII 304243 . G A 4683.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.7302;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.02;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,190:195:99:4683,487,0 chrXII 304381 . A G 4505.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.98;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4505,492,0 chrXII 304435 . A G 4320.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.82;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4320,474,0 chrXII 305230 . A G 3480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=144;Dels=0.00;FS=3.590;HaplotypeScore=8.1205;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.347;QD=24.17;ReadPosRankSum=1.684;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3480,378,0 chrXII 305296 . C T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.1197;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=25.50;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3289,337,0 chrXII 305324 . G A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.56;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3299,345,0 chrXII 305656 . A C 4549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.273;DP=188;Dels=0.00;FS=12.857;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.658;QD=24.20;ReadPosRankSum=3.376;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:4,183:188:99:4549,498,0 chrXII 305731 . A G 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=185;Dels=0.00;FS=3.032;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.154;QD=21.59;ReadPosRankSum=2.423;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:3995,429,0 chrXII 305736 . C A 4144.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.6501;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.28;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4144,424,0 chrXII 305771 . A G 4566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=214;Dels=0.00;FS=9.216;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.939;QD=21.34;ReadPosRankSum=2.930;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:3,211:214:99:4566,507,0 chrXII 305835 . A G 4182.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=178;Dels=0.00;FS=2.797;HaplotypeScore=12.3074;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.214;QD=23.49;ReadPosRankSum=2.408;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4182,450,0 chrXII 305998 . T C 4192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=171;Dels=0.00;FS=10.074;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.462;QD=24.51;ReadPosRankSum=2.935;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:3,167:171:99:4192,453,0 chrXII 306415 . A G 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.512;QD=24.42;ReadPosRankSum=1.689;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3907,435,0 chrXII 306582 . C G 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.782;QD=20.50;ReadPosRankSum=-0.414;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2391,267,0 chrXII 306665 . C T 1934 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=20.80;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1967,213,0 chrXII 306867 . A G 2883 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.64;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2916,324,0 chrXII 307335 . A G 3514.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.07;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3514,384,0 chrXII 307916 . C G 4737.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4737,516,0 chrXII 308040 . C A 4891.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.0692;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.13;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4891,534,0 chrXII 308322 . G A 4330.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.47;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4330,448,0 chrXII 308379 . C T 4667.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.2569;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.81;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4667,507,0 chrXII 308503 . T C 4676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.606;QD=24.23;ReadPosRankSum=1.714;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4676,522,0 chrXII 308630 . G A 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.219;DP=191;Dels=0.00;FS=4.314;HaplotypeScore=10.3322;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.981;QD=23.70;ReadPosRankSum=0.449;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4527,451,0 chrXII 308671 . T C 3873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=180;Dels=0.00;FS=4.351;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.165;QD=21.52;ReadPosRankSum=1.713;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,176:180:99:3873,432,0 chrXII 308703 . T C 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=170;Dels=0.00;FS=3.776;HaplotypeScore=13.6518;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.301;QD=21.71;ReadPosRankSum=1.670;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,166:170:99:3690,414,0 chrXII 308802 . C T 3702.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.8660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.04;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3702,393,0 chrXII 308994 . A G 4217.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=195;Dels=0.00;FS=3.606;HaplotypeScore=2.3140;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.666;QD=21.63;ReadPosRankSum=0.808;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4217,447,0 chrXII 309006 . A T 4032.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.78;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4032,412,0 chrXII 309737 . C T 4036.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6486;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.07;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:4036,409,0 chrXII 309831 . C A 3148 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.98;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3181,354,0 chrXII 310010 . G A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3608,376,0 chrXII 310404 . A G 3554.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.34;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3554,384,0 chrXII 310443 . T C 3504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=149;Dels=0.00;FS=3.000;HaplotypeScore=11.9783;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.136;QD=23.52;ReadPosRankSum=2.349;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:2,144:149:99:3504,375,0 chrXII 310626 . C T 3323.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.24;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3323,360,0 chrXII 310695 . C T 3110 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.74;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3143,339,0 chrXII 310980 . A G 2736 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=20.12;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2769,300,0 chrXII 310983 . T C 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=141;Dels=0.00;FS=6.240;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-0.078;QD=19.42;ReadPosRankSum=2.345;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2771,300,0 chrXII 311077 . C T 3991.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.2205;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3991,415,0 chrXII 311181 . G A 3380.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.68;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3380,349,0 chrXII 311340 . G A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.4655;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=24.08;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3347,360,0 chrXII 311397 . A G 3851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=0.531;QD=22.01;ReadPosRankSum=1.672;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3851,417,0 chrXII 311412 . A G 4038.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=22.56;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4038,435,0 chrXII 311493 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3648;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.17;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3498,369,0 chrXII 311508 . G A 3371.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.32;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3371,363,0 chrXII 312703 . A T 2544 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.13;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2577,267,0 chrXII 312732 . G A 3135 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.30;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3168,330,0 chrXII 312972 . T C 2868 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.78;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2901,312,0 chrXII 312984 . T A 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=3.073;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-0.569;QD=20.50;ReadPosRankSum=1.633;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2903,306,0 chrXII 313107 . T G 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=166;Dels=0.00;FS=3.027;HaplotypeScore=11.7791;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.096;QD=22.24;ReadPosRankSum=2.420;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3692,414,0 chrXII 313195 . G A 3878.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.50;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3878,414,0 chrXII 313320 . T C 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=3.118;HaplotypeScore=9.8938;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.169;QD=22.85;ReadPosRankSum=1.711;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3747,411,0 chrXII 313374 . T C 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=4.635;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.077;QD=20.41;ReadPosRankSum=1.710;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3238,360,0 chrXII 313530 . G A 4092.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.7622;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.65;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4092,427,0 chrXII 313535 . A G 3490.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.76;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:3490,378,0 chrXII 315642 . T C 2690 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2723,303,0 chrXII 316628 . T C 5481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.115;DP=237;Dels=0.00;FS=10.762;HaplotypeScore=19.6856;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.046;QD=23.13;ReadPosRankSum=4.079;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:6,230:237:99:5481,603,0 chrXII 316874 . T C 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=172;Dels=0.00;FS=5.377;HaplotypeScore=10.6989;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.502;QD=21.83;ReadPosRankSum=1.712;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3754,402,0 chrXII 317315 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=21.14;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3298,366,0 chrXII 317498 . G A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.8695;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.51;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3762,402,0 chrXII 317534 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=23.02;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2980,318,0 chrXII 317549 . T C 2672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=3.226;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-0.363;QD=21.38;ReadPosRankSum=1.620;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2705,291,0 chrXII 318011 . C T 4630.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.89;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4630,481,0 chrXII 318348 . A G 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=3.859;HaplotypeScore=9.0989;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.113;QD=24.50;ReadPosRankSum=1.700;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2654,288,0 chrXII 318498 . A G 4257.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.33;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4257,459,0 chrXII 319560 . G A 5280.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.76;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:0,201:205:99:5280,570,0 chrXII 319635 . A G 4160.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4160,456,0 chrXII 320192 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.4583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.601;QD=23.96;ReadPosRankSum=1.688;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3786,414,0 chrXII 320465 . C T 4822.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.25;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4822,508,0 chrXII 320691 . G A 5321.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=15.0490;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.34;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5321,579,0 chrXII 320799 . C T 4856.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.9092;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.78;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4856,511,0 chrXII 321057 . T G 4513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.087;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.1796;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-1.120;QD=22.68;ReadPosRankSum=-0.577;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4513,462,0 chrXII 321081 . A G 3817.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.829;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.4547;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-0.475;QD=19.38;ReadPosRankSum=0.614;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:2,192:197:99:3817,401,0 chrXII 321084 . C T 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.926;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.9698;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-1.732;QD=20.41;ReadPosRankSum=-0.559;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3857,384,0 chrXII 321555 . C T 3276.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.82;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3276,340,0 chrXII 321772 . T C 3849.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.21;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3849,420,0 chrXII 322042 . C T 2526 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=18.99;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2559,273,0 chrXII 322181 . G A 3531.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.63;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3531,367,0 chrXII 322198 . C T 3567.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=22.02;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3567,367,0 chrXII 322259 . C T 2286 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=2.5114;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=13.45;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2319,252,0 chrXII 322263 . C G 2130 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=169;Dels=0.01;FS=15.033;HaplotypeScore=5.7044;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;MQRankSum=-1.714;QD=12.60;ReadPosRankSum=2.420;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:2,165:168:99:2163,246,0 chrXII 322264 . T C 2191 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.6212;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;MQRankSum=-1.172;QD=12.96;ReadPosRankSum=1.711;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:3,166:169:99:2224,246,0 chrXII 322494 . A G 6418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=278;Dels=0.00;FS=3.026;HaplotypeScore=16.2973;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.332;QD=23.09;ReadPosRankSum=2.396;SB=-3.464e+03 GT:AD:DP:GQ:PL 1/1:2,275:278:99:6418,711,0 chrXII 322662 . T C 4842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=216;Dels=0.00;FS=10.002;HaplotypeScore=20.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.727;QD=22.42;ReadPosRankSum=2.427;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:2,212:216:99:4842,525,0 chrXII 322764 . T C 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=5.428;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-1.003;QD=22.09;ReadPosRankSum=1.671;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3822,426,0 chrXII 322903 . G A 3015 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3048,330,0 chrXII 323271 . C T 4753.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.07;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4753,502,0 chrXII 323467 . G A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.4541;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.80;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3523,369,0 chrXII 323543 . T C 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-0.271;QD=24.62;ReadPosRankSum=1.624;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3185,348,0 chrXII 323570 . T A 3195 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.50;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3228,354,0 chrXII 324204 . G A 6026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=263;Dels=0.00;FS=4.609;HaplotypeScore=20.6201;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.718;QD=22.91;ReadPosRankSum=-0.007;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:6026,657,0 chrXII 324449 . C T 3201 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.5829;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.92;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3234,348,0 chrXII 324470 . G A 2990 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.67;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3023,315,0 chrXII 324662 . A G 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=3.979;HaplotypeScore=10.9443;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.671;QD=24.25;ReadPosRankSum=1.710;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3904,420,0 chrXII 324710 . A G 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=165;Dels=0.00;FS=7.946;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.517;QD=23.07;ReadPosRankSum=2.420;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3807,429,0 chrXII 326497 . C T 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.212;DP=98;Dels=0.00;FS=3.892;HaplotypeScore=13.4805;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.318;QD=18.80;ReadPosRankSum=-0.495;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1875,195,0 chrXII 327143 . G T 5035.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.3868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.53;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5035,558,0 chrXII 329513 . G A 3906.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.4520;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=23.67;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3906,412,0 chrXII 329761 . C T 206.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.186;DP=357;Dels=0.00;FS=8.933;HaplotypeScore=211.8497;MLEAC=1;MLEAF=0.500;MQ=45.70;MQ0=0;MQRankSum=-7.726;QD=0.58;ReadPosRankSum=9.327;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:314,39:357:99:236,0,1968 chrXII 329764 . T C 151.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.803;DP=354;Dels=0.00;FS=8.982;HaplotypeScore=205.2707;MLEAC=1;MLEAF=0.500;MQ=45.28;MQ0=0;MQRankSum=-8.252;QD=0.43;ReadPosRankSum=8.012;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:316,38:354:99:181,0,2309 chrXII 329765 . G T 192.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.645;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=205.4767;MLEAC=1;MLEAF=0.500;MQ=45.11;MQ0=0;MQRankSum=-2.949;QD=0.54;ReadPosRankSum=-7.107;SB=-6.120e+02 GT:AD:DP:GQ:PL 0/1:239,114:353:99:222,0,2192 chrXII 329775 . A T 126.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.108;DP=298;Dels=0.00;FS=2.301;HaplotypeScore=16.2234;MLEAC=1;MLEAF=0.500;MQ=47.02;MQ0=0;MQRankSum=-5.697;QD=0.42;ReadPosRankSum=1.076;SB=-1.480e+02 GT:AD:DP:GQ:PL 0/1:257,41:298:99:156,0,2829 chrXII 329780 . T G 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.839;DP=305;Dels=0.00;FS=4.422;HaplotypeScore=15.0492;MLEAC=1;MLEAF=0.500;MQ=48.11;MQ0=0;MQRankSum=-6.758;QD=0.09;ReadPosRankSum=-0.044;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:267,38:305:58:58,0,3227 chrXII 329781 . G T 38.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.911;DP=300;Dels=0.00;FS=0.641;HaplotypeScore=19.1456;MLEAC=1;MLEAF=0.500;MQ=48.84;MQ0=0;MQRankSum=-5.143;QD=0.13;ReadPosRankSum=-1.894;SB=-1.240e+02 GT:AD:DP:GQ:PL 0/1:257,43:300:68:68,0,3051 chrXII 329784 . A C 51.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;DP=299;Dels=0.00;FS=2.301;HaplotypeScore=19.0880;MLEAC=1;MLEAF=0.500;MQ=49.74;MQ0=0;MQRankSum=-7.692;QD=0.17;ReadPosRankSum=-2.449;SB=-1.240e+02 GT:AD:DP:GQ:PL 0/1:259,38:299:81:81,0,3415 chrXII 331291 . C T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3605,376,0 chrXII 333217 . C T 3592.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.2472;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.27;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3592,373,0 chrXII 333360 . T C 3175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.614;DP=139;Dels=0.00;FS=15.863;HaplotypeScore=16.5364;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.402;QD=22.84;ReadPosRankSum=3.761;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:5,134:139:99:3208,348,0 chrXII 333672 . C T 5778.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=5.1228;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.79;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5778,604,0 chrXII 334170 . A G 4441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=190;Dels=0.00;FS=2.879;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.032;QD=23.37;ReadPosRankSum=2.424;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4441,480,0 chrXII 334208 . G A 4055.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.0435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4055,421,0 chrXII 334365 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.6027;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.16;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4034,441,0 chrXII 334460 . G A 4349.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.5677;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.16;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4349,448,0 chrXII 334635 . A G 4259.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.2444;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.73;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4259,465,0 chrXII 334864 . C T 4412.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.2135;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4412,460,0 chrXII 336483 . C T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.9331;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.65;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4461,460,0 chrXII 338988 . C T 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.474;QD=23.43;ReadPosRankSum=1.578;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3725,408,0 chrXII 339159 . A G 4027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.488;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.0309;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.712;QD=23.41;ReadPosRankSum=-1.263;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:4027,422,0 chrXII 339318 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.9015;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3754,391,0 chrXII 339632 . T C 1269 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=16.92;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1302,150,0 chrXII 340119 . C T 5164.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.47;SB=-2.566e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5164,544,0 chrXII 340365 . A G 4447.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.69;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4447,483,0 chrXII 340551 . A C 3871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.631;QD=21.87;ReadPosRankSum=1.652;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:1,172:177:99:3871,441,0 chrXII 340584 . T C 4166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-1.007;QD=21.81;ReadPosRankSum=1.714;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4166,456,0 chrXII 340602 . A G 3875.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=18.90;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3875,435,0 chrXII 340616 . A G 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=217;Dels=0.00;FS=3.949;HaplotypeScore=9.3470;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.128;QD=17.80;ReadPosRankSum=1.716;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:3863,423,0 chrXII 340695 . T C 7260.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=14.4023;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-2.888e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:7260,787,0 chrXII 340821 . T C 5020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=237;Dels=0.00;FS=4.187;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-1.233;QD=21.18;ReadPosRankSum=1.717;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:1,235:237:99:5020,549,0 chrXII 340842 . G C 5311.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=20.19;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,260:263:99:5311,571,0 chrXII 341507 . C A 8137.01 filter AC=2;AF=1.00;AN=2;DP=416;Dels=0.00;FS=0.000;HaplotypeScore=32.9627;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=19.56;SB=-3.167e+03 GT:AD:DP:GQ:PL 1/1:0,413:416:99:8137,883,0 chrXII 341678 . G A 6066.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=10.6621;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.30;SB=-3.073e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:6066,657,0 chrXII 341688 . T A 5756.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=7.0599;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.24;SB=-2.977e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:5756,624,0 chrXII 341926 . T G 5083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=226;Dels=0.00;FS=3.845;HaplotypeScore=10.1411;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=1.235;QD=22.49;ReadPosRankSum=1.701;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:1,222:225:99:5083,564,0 chrXII 341974 . T C 4373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=186;Dels=0.00;FS=3.378;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.852;QD=23.51;ReadPosRankSum=1.713;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4373,480,0 chrXII 342190 . A G 3701.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.64;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3701,411,0 chrXII 342295 . T C 4177.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.95;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4177,459,0 chrXII 342331 . T C 3958.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=16.9765;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.75;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3958,429,0 chrXII 342448 . T C 3517.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.8421;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=24.59;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3517,381,0 chrXII 342508 . C T 2601 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.48;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2634,291,0 chrXII 342533 . G A 2718 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.6173;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.84;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2751,288,0 chrXII 342682 . A G 3191 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.3469;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=23.64;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3224,354,0 chrXII 342709 . C G 3082 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.86;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3115,348,0 chrXII 342885 . A G 424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=3.072;HaplotypeScore=132.4235;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-1.415;QD=2.94;ReadPosRankSum=1.683;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:51:457,51,0 chrXII 343120 . G A 4189.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=25.39;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4189,436,0 chrXII 343270 . A C 5710.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=4.9843;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.04;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5710,621,0 chrXII 343396 . C T 5973.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.80;SB=-3.535e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:5973,628,0 chrXII 343844 . T C 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=95.7118;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-0.554;QD=15.62;ReadPosRankSum=1.755;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:3,130:135:99:2142,234,0 chrXII 343903 . G A 1761 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=11.0879;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=18.15;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1794,189,0 chrXII 343906 . A C 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.434;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.6660;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=0.801;QD=17.06;ReadPosRankSum=0.913;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1637,180,0 chrXII 343944 . A G 1496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.163;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=-0.378;QD=17.00;ReadPosRankSum=1.692;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1529,165,0 chrXII 343945 . T G 1579 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=17.74;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1612,174,0 chrXII 344336 . A G 3337.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.18;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3337,363,0 chrXII 344703 . A G 3482.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.18;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3482,390,0 chrXII 344847 . T C 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=202;Dels=0.00;FS=3.442;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.336;QD=21.62;ReadPosRankSum=1.680;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4367,471,0 chrXII 344859 . C T 4443.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.67;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4443,477,0 chrXII 344894 . G A 4225.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.45;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4225,442,0 chrXII 345042 . C T 4978.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=24.40;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4978,520,0 chrXII 345102 . T C 4249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=3.277;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=-0.946;QD=22.97;ReadPosRankSum=1.657;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4249,468,0 chrXII 345153 . T C 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=155;Dels=0.00;FS=3.125;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-1.642;QD=22.80;ReadPosRankSum=1.710;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3534,375,0 chrXII 345204 . T C 5044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=216;Dels=0.00;FS=2.868;HaplotypeScore=11.2249;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-0.358;QD=23.35;ReadPosRankSum=2.427;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:5044,555,0 chrXII 345249 . A G 5194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=246;Dels=0.00;FS=7.254;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=-0.614;QD=21.11;ReadPosRankSum=2.390;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:2,244:246:99:5194,573,0 chrXII 345286 . T C 3863.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=207;Dels=0.00;FS=6.015;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;MQRankSum=-0.694;QD=18.66;ReadPosRankSum=2.966;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:3863,417,0 chrXII 345293 . G A 3913.01 SnpCluster AC=2;AF=1.00;AN=2;DP=200;Dels=0.02;FS=0.000;HaplotypeScore=18.0080;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=19.57;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:3913,406,0 chrXII 345295 . C T 3907.01 SnpCluster AC=2;AF=1.00;AN=2;DP=199;Dels=0.02;FS=0.000;HaplotypeScore=18.0080;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=19.63;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3907,412,0 chrXII 345387 . G C 5104.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=4.4395;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=17.36;SB=-3.120e+03 GT:AD:DP:GQ:PL 1/1:0,294:294:99:5104,555,0 chrXII 345397 . T C 4790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-1.195;QD=16.87;ReadPosRankSum=1.695;SB=-3.418e+03 GT:AD:DP:GQ:PL 1/1:1,283:284:99:4790,519,0 chrXII 345660 . A G 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=178;Dels=0.00;FS=3.085;HaplotypeScore=12.8249;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.851;QD=21.96;ReadPosRankSum=1.673;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3908,423,0 chrXII 345771 . T C 5229.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5229,576,0 chrXII 346092 . T A 3120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=158;Dels=0.00;FS=7.861;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-1.498;QD=19.75;ReadPosRankSum=2.386;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3153,345,0 chrXII 346127 . A G 2232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=3.323;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;MQRankSum=-1.492;QD=15.50;ReadPosRankSum=1.708;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2265,246,0 chrXII 346167 . G A 2187 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.5450;MLEAC=2;MLEAF=1.00;MQ=33.62;MQ0=0;QD=13.50;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2220,234,0 chrXII 346177 . A G 1944 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=0;QD=12.30;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:1977,213,0 chrXII 346181 . G A 1941 SnpCluster AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.29;MQ0=0;QD=12.06;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:1974,210,0 chrXII 346187 . A G 2034 SnpCluster AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=12.71;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2067,219,0 chrXII 346204 . T C 2354 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=14.53;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2387,258,0 chrXII 346228 . T A 2486 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.20;MQ0=0;QD=15.44;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2519,261,0 chrXII 346231 . T G 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.301;DP=166;Dels=0.00;FS=8.658;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;MQRankSum=-2.364;QD=14.34;ReadPosRankSum=3.407;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:4,162:166:99:2413,261,0 chrXII 346360 . A T 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;MQRankSum=0.035;QD=22.42;ReadPosRankSum=1.709;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3341,348,0 chrXII 346407 . A G 4126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=176;Dels=0.00;FS=3.018;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;MQRankSum=-0.344;QD=23.44;ReadPosRankSum=2.295;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:4126,441,0 chrXII 346449 . T G 4710.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.8520;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=23.79;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4710,519,0 chrXII 346533 . C G 3691.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.37;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3691,402,0 chrXII 346554 . C T 3642.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.34;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3642,390,0 chrXII 346698 . G A 4296.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.41;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4296,448,0 chrXII 346884 . T G 3336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.2552;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.687;QD=21.95;ReadPosRankSum=0.843;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3336,363,0 chrXII 347086 . T C 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=141;Dels=0.00;FS=2.969;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.676;QD=22.16;ReadPosRankSum=2.415;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3158,345,0 chrXII 347194 . C T 4238.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4238,442,0 chrXII 347536 . T G 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.577;QD=22.74;ReadPosRankSum=1.709;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3343,375,0 chrXII 347644 . T C 4487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.249;DP=211;Dels=0.00;FS=16.068;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.594;QD=21.27;ReadPosRankSum=3.384;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:4,203:211:99:4487,489,0 chrXII 347880 . G A 4966.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.8562;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.21;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4966,520,0 chrXII 347911 . C T 5801.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.4483;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.79;SB=-3.155e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5801,607,0 chrXII 348136 . A G 4674.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.1664;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.58;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4674,504,0 chrXII 348259 . A G 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.179;DP=181;Dels=0.00;FS=5.423;HaplotypeScore=16.8543;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.101;QD=20.71;ReadPosRankSum=1.944;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:3,177:181:99:3748,378,0 chrXII 348314 . A C 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.459;QD=23.05;ReadPosRankSum=1.711;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3804,420,0 chrXII 348630 . T C 2370 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.69;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2403,255,0 chrXII 348674 . G C 1826 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.68;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1859,201,0 chrXII 348730 . C T 523 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=11.2996;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=13.07;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:2,38:40:60:556,60,0 chrXII 348827 . A G 1485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=62;Dels=0.00;FS=2.859;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.060;QD=23.95;ReadPosRankSum=2.371;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1518,165,0 chrXII 348896 . G A 1026 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.52;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1059,111,0 chrXII 349138 . C T 3871.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=25.64;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3871,403,0 chrXII 349585 . A G 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=4.348;HaplotypeScore=7.2779;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.271;QD=23.80;ReadPosRankSum=1.690;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3975,432,0 chrXII 349651 . A G 4333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.363;DP=181;Dels=0.00;FS=14.149;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.400;QD=23.94;ReadPosRankSum=3.411;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:4,177:181:99:4333,471,0 chrXII 349899 . G A 3591.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.76;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3591,370,0 chrXII 350013 . T C 5231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.053;QD=22.94;ReadPosRankSum=1.686;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:5231,582,0 chrXII 350281 . T C 4655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=209;Dels=0.00;FS=3.029;HaplotypeScore=21.8605;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.528;QD=22.27;ReadPosRankSum=2.402;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:2,205:209:99:4655,510,0 chrXII 350793 . C T 3802.01 SnpCluster AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.74;MQ0=0;QD=16.46;SB=-3.085e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:3802,397,0 chrXII 350795 . G A 3797.01 SnpCluster AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.50;MQ0=0;QD=16.58;SB=-3.089e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:3797,391,0 chrXII 350799 . C T 3423.01 SnpCluster AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.26;MQ0=0;QD=16.07;SB=-2.978e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:3423,355,0 chrXII 350896 . G A 5138.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=16.36;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:0,313:314:99:5138,532,0 chrXII 351004 . A G 6119.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=22.25;SB=-3.431e+03 GT:AD:DP:GQ:PL 1/1:0,273:275:99:6119,675,0 chrXII 351127 . C T 4127.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.7500;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.47;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4127,436,0 chrXII 351136 . T A 4186.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=19.20;SB=-2.783e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4186,450,0 chrXII 351600 . G C 5837.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.19;SB=-3.315e+03 GT:AD:DP:GQ:PL 1/1:0,260:263:99:5837,631,0 chrXII 351683 . A G 6005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.174;QD=21.92;ReadPosRankSum=1.694;SB=-3.039e+03 GT:AD:DP:GQ:PL 1/1:1,272:274:99:6005,646,0 chrXII 352492 . C T 4411.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,182:187:99:4411,480,0 chrXII 352576 . G A 4710.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.32;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4710,504,0 chrXII 352759 . T C 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.305;QD=25.13;ReadPosRankSum=1.707;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3468,372,0 chrXII 352942 . C T 1941 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=18.31;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1974,204,0 chrXII 352956 . C A 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=4.246;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.016;QD=20.49;ReadPosRankSum=0.715;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2266,234,0 chrXII 353046 . G T 2359 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2392,249,0 chrXII 353314 . G A 2453 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.03;MQ0=0;QD=22.93;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2486,258,0 chrXII 353555 . G T 2825 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.8455;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2858,297,0 chrXII 353879 . G C 2805 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.37;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2838,306,0 chrXII 354067 . G C 3324.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.57;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3324,366,0 chrXII 354477 . C T 3832.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.2843;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.56;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3832,405,0 chrXII 354550 . A G 3143 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.36;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3176,345,0 chrXII 354694 . C T 4196.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.83;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4196,442,0 chrXII 354979 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3265,348,0 chrXII 355027 . C T 3408.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3408,369,0 chrXII 355082 . C T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3312,345,0 chrXII 355221 . C T 4105.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.5133;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.88;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:4105,424,0 chrXII 355284 . G A 3063 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3096,318,0 chrXII 355321 . G A 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=118;Dels=0.00;FS=4.247;HaplotypeScore=6.9128;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.104;QD=24.93;ReadPosRankSum=0.133;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2975,284,0 chrXII 355416 . T C 3336.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.0161;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.33;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3336,363,0 chrXII 355552 . T C 2782 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.18;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2815,312,0 chrXII 355771 . G A 2987 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5921;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3020,324,0 chrXII 355823 . T C 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=129;Dels=0.00;FS=3.112;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.121;QD=23.23;ReadPosRankSum=1.705;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3030,330,0 chrXII 355883 . A G 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.349;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.364;QD=23.89;ReadPosRankSum=1.689;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3846,423,0 chrXII 356494 . G A 2790 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.5362;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.25;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2823,303,0 chrXII 356647 . A G 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=3.431;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.146;QD=22.93;ReadPosRankSum=1.705;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3037,330,0 chrXII 357438 . G T 3003 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=25.24;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3036,315,0 chrXII 357508 . C G 2985 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.69;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3018,327,0 chrXII 357535 . A G 2681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=3.185;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.614;QD=21.11;ReadPosRankSum=1.678;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2714,294,0 chrXII 357577 . C T 2918 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=23.53;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2951,306,0 chrXII 357639 . C T 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.921;DP=135;Dels=0.00;FS=6.940;HaplotypeScore=6.5951;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.264;QD=21.57;ReadPosRankSum=1.484;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2945,309,0 chrXII 357640 . A G 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.827;DP=135;Dels=0.00;FS=3.563;HaplotypeScore=7.3838;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.982;QD=20.55;ReadPosRankSum=1.603;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2807,306,0 chrXII 357723 . C T 2945 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.83;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2978,321,0 chrXII 357940 . T C 3042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.622;DP=133;Dels=0.00;FS=12.318;HaplotypeScore=12.9867;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.318;QD=22.87;ReadPosRankSum=3.730;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:5,126:133:99:3075,345,0 chrXII 358096 . C T 4308.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.2968;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.76;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4308,468,0 chrXII 358302 . A G 4325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=188;Dels=0.00;FS=6.234;HaplotypeScore=11.8206;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.944;QD=23.01;ReadPosRankSum=2.423;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:2,184:188:99:4325,471,0 chrXII 358692 . C T 4614.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.8427;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.42;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4614,487,0 chrXII 359296 . T C 3152 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.8819;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.25;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3185,345,0 chrXII 359469 . A G 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=166;Dels=0.00;FS=6.880;HaplotypeScore=12.8118;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.320;QD=23.48;ReadPosRankSum=2.375;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3898,423,0 chrXII 360439 . C G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.41;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3267,369,0 chrXII 360526 . A G 3304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=147;Dels=0.00;FS=3.006;HaplotypeScore=11.0766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.393;QD=22.48;ReadPosRankSum=2.383;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3304,357,0 chrXII 360772 . A G 4124.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4124,456,0 chrXII 360896 . G A 3546.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.80;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3546,369,0 chrXII 360970 . G A 4103.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.81;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:4103,427,0 chrXII 361284 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.99;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3401,369,0 chrXII 361865 . A G 2638 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=21.27;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2671,300,0 chrXII 361878 . T C 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.1647;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-1.427;QD=21.91;ReadPosRankSum=1.677;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2816,306,0 chrXII 362782 . G A 3798.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.66;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3798,397,0 chrXII 363207 . G A 2344 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2377,249,0 chrXII 363562 . A T 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=129;Dels=0.00;FS=3.590;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;MQRankSum=0.595;QD=26.14;ReadPosRankSum=1.678;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3372,354,0 chrXII 363670 . A G 2779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.413;DP=121;Dels=0.00;FS=2.939;HaplotypeScore=10.5930;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.722;QD=22.97;ReadPosRankSum=2.409;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2812,285,0 chrXII 363704 . A G 2593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.143;QD=23.15;ReadPosRankSum=2.340;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2626,291,0 chrXII 363912 . T C 2269 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2302,249,0 chrXII 364406 . T C 2749 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=21.31;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2782,300,0 chrXII 364410 . C T 2897 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.95;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2930,300,0 chrXII 364505 . A G 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=169;Dels=0.00;FS=6.473;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.294;QD=22.07;ReadPosRankSum=2.406;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3729,405,0 chrXII 364537 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.05;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3824,426,0 chrXII 364596 . T A 4354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.2905;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.990;QD=25.31;ReadPosRankSum=1.608;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:4354,451,0 chrXII 365048 . T G 3215.99 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3249,357,0 chrXII 365170 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.3798;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.89;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2646,279,0 chrXII 365572 . C T 3293.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.95;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3293,342,0 chrXII 365653 . G A 3332.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=26.44;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3332,357,0 chrXII 365684 . A G 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=121;Dels=0.00;FS=6.427;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.884;QD=23.50;ReadPosRankSum=2.409;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2876,312,0 chrXII 365722 . G A 2707 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=22.75;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2740,291,0 chrXII 365733 . T A 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.158;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.173;QD=23.55;ReadPosRankSum=1.703;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2859,291,0 chrXII 365746 . T C 2605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=123;Dels=0.00;FS=6.128;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=1.170;QD=21.18;ReadPosRankSum=2.370;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2638,282,0 chrXII 365816 . T A 2535 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=24.14;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2568,267,0 chrXII 365894 . T A 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.00;FS=3.549;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=0.837;QD=23.36;ReadPosRankSum=1.703;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2906,306,0 chrXII 365995 . C A 1433 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.07;MQ0=0;QD=21.71;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1466,153,0 chrXII 365996 . T A 1457 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.46;MQ0=0;QD=21.75;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1490,156,0 chrXII 366064 . A G 970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;MQRankSum=-1.216;QD=20.64;ReadPosRankSum=1.659;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1003,108,0 chrXII 366072 . G A 932 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=19.02;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:965,102,0 chrXII 366194 . T C 1071 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=15.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1104,120,0 chrXII 366225 . G A 979 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.692;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=-0.174;QD=14.19;ReadPosRankSum=3.460;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,64:69:99:1012,114,0 chrXII 366378 . G A 3533.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=22.08;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3533,384,0 chrXII 366500 . C T 2961 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.95;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2994,315,0 chrXII 366558 . T C 3491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=145;Dels=0.00;FS=7.142;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.364;QD=24.08;ReadPosRankSum=2.348;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3491,381,0 chrXII 366649 . G T 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=18.9132;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.658;QD=21.03;ReadPosRankSum=1.167;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3040,315,0 chrXII 366845 . C T 4039.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.4206;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.48;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4039,418,0 chrXII 367056 . C T 3418.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.4442;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.07;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3418,354,0 chrXII 367241 . T G 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.391;QD=23.30;ReadPosRankSum=1.710;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3611,390,0 chrXII 367293 . C T 3093 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3126,330,0 chrXII 367545 . T C 2243 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.9587;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2276,255,0 chrXII 367673 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=139;Dels=0.00;FS=8.262;HaplotypeScore=8.7579;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.593;QD=23.14;ReadPosRankSum=2.379;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3249,354,0 chrXII 367825 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.67;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3414,355,0 chrXII 367857 . T C 3467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=3.298;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.355;QD=22.08;ReadPosRankSum=1.665;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3467,375,0 chrXII 367953 . T C 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.125;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.562;QD=21.88;ReadPosRankSum=1.710;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3370,372,0 chrXII 367964 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=21.19;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3284,363,0 chrXII 367969 . G A 2902 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=18.60;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2935,333,0 chrXII 368770 . C T 3180 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.65;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3213,342,0 chrXII 368772 . C T 3185 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.16;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3218,342,0 chrXII 369062 . G A 8533.01 PASS AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=16.8526;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.32;SB=-3.155e+03 GT:AD:DP:GQ:PL 1/1:0,335:337:99:8533,892,0 chrXII 369632 . A G 961 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.13;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:994,108,0 chrXII 369646 . C T 1113 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.00;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1146,120,0 chrXII 369830 . G C 4669.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.7209;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.57;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,186:190:99:4669,516,0 chrXII 370553 . G A 2229 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.77;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2262,237,0 chrXII 370629 . C G 2583 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.48;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2616,291,0 chrXII 370873 . C T 5949.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=8.3992;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.58;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,239:242:99:5949,625,0 chrXII 371081 . T A 5336.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.20;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5336,553,0 chrXII 371874 . T A 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.750;DP=133;Dels=0.00;FS=14.023;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.326;QD=23.53;ReadPosRankSum=2.902;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:3162,336,0 chrXII 372265 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=169;Dels=0.00;FS=4.497;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=0.379;QD=21.09;ReadPosRankSum=1.671;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3565,393,0 chrXII 372291 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.82;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3561,364,0 chrXII 372303 . C T 3462.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.9247;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.78;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3462,378,0 chrXII 372524 . C T 6755.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=9.0755;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=25.11;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,268:269:99:6755,724,0 chrXII 372653 . A G 7185.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=24.5244;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.40;SB=-3.330e+03 GT:AD:DP:GQ:PL 1/1:0,305:307:99:7185,778,0 chrXII 372738 . A G 6934.01 PASS AC=2;AF=1.00;AN=2;DP=339;Dels=0.00;FS=0.000;HaplotypeScore=16.4496;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.45;SB=-3.161e+03 GT:AD:DP:GQ:PL 1/1:0,338:339:99:6934,786,0 chrXII 372968 . T C 3731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=20.4314;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-1.396;QD=22.61;ReadPosRankSum=1.543;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3731,402,0 chrXII 373070 . G A 1611 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.7619;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=12.99;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1644,168,0 chrXII 373094 . T C 1353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=108;Dels=0.00;FS=6.400;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=36.42;MQ0=0;MQRankSum=0.778;QD=12.53;ReadPosRankSum=1.010;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:2,104:108:99:1386,153,0 chrXII 373100 . G T 1375 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=13.75;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1408,150,0 chrXII 373117 . T A 992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.549;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=0;MQRankSum=-2.123;QD=11.95;ReadPosRankSum=2.391;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1025,108,0 chrXII 373121 . C T 991 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=1.9598;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=12.71;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1024,108,0 chrXII 373132 . G A 1040 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.24;MQ0=0;QD=13.87;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1073,114,0 chrXII 373138 . A C 1008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.70;MQ0=0;MQRankSum=1.495;QD=13.81;ReadPosRankSum=1.685;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1041,114,0 chrXII 373147 . C T 1146 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.49;MQ0=0;QD=15.08;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1179,120,0 chrXII 373233 . A T 2390 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=21.34;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2423,267,0 chrXII 373243 . C T 2005 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=19.66;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2038,219,0 chrXII 373260 . C T 2107 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.94;MQ0=0;QD=21.50;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2140,234,0 chrXII 373287 . C A 2031 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.35;MQ0=0;QD=22.08;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2064,222,0 chrXII 373385 . T A 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;MQRankSum=0.029;QD=25.12;ReadPosRankSum=1.703;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3047,321,0 chrXII 373453 . C G 1839 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=72.7113;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;QD=21.14;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1872,201,0 chrXII 373488 . T C 1569 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.02;MQ0=0;QD=16.69;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1602,174,0 chrXII 373508 . A G 1368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=3.141;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.53;MQ0=0;MQRankSum=-1.561;QD=13.54;ReadPosRankSum=1.561;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1401,153,0 chrXII 373516 . T C 1344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=0;MQRankSum=-1.359;QD=13.18;ReadPosRankSum=1.664;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1377,147,0 chrXII 373567 . C G 2423 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=16.37;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:2456,267,0 chrXII 373579 . T G 2394 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=17.47;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2427,264,0 chrXII 373640 . T A 2248 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=41.86;MQ0=0;QD=17.84;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2281,237,0 chrXII 373658 . T C 1558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=167.6426;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;MQRankSum=-1.264;QD=13.79;ReadPosRankSum=1.638;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:1591,171,0 chrXII 373666 . T C 415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-7.530;DP=135;Dels=0.00;FS=3.270;HaplotypeScore=190.0436;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=0;MQRankSum=-0.817;QD=3.07;ReadPosRankSum=-9.401;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:86,49:135:30:448,30,0 chrXII 373806 . T C 3050 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=37.69;MQ0=0;QD=24.02;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3083,345,0 chrXII 373838 . C G 2906 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=35.12;MQ0=0;QD=24.02;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2939,327,0 chrXII 373842 . T C 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=118;Dels=0.00;FS=5.330;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.68;MQ0=0;MQRankSum=-1.135;QD=23.58;ReadPosRankSum=1.643;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2816,315,0 chrXII 373866 . G A 3048 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=37.70;MQ0=0;QD=24.00;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3081,333,0 chrXII 373988 . A C 1605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.01;MQ0=0;MQRankSum=-1.537;QD=22.61;ReadPosRankSum=1.635;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1638,180,0 chrXII 374445 . A G 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.5752;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;MQRankSum=1.199;QD=21.64;ReadPosRankSum=1.599;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2889,318,0 chrXII 374666 . G A 1818 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=24.90;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1851,189,0 chrXII 374847 . T C 1808 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=22.05;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1841,198,0 chrXII 374858 . T C 2079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=-1.694;QD=23.10;ReadPosRankSum=1.694;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2112,228,0 chrXII 374933 . T A 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.658;QD=24.71;ReadPosRankSum=1.705;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3220,336,0 chrXII 374962 . C T 3059 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=21.39;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3092,324,0 chrXII 374970 . A T 3148 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.8257;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=20.71;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3181,345,0 chrXII 375009 . T C 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=-0.008;QD=18.21;ReadPosRankSum=2.417;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2747,303,0 chrXII 375030 . T C 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;MQRankSum=0.982;QD=18.71;ReadPosRankSum=1.688;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2970,330,0 chrXII 375078 . T C 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=2.783;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=37.99;MQ0=0;MQRankSum=0.090;QD=19.45;ReadPosRankSum=2.417;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:2,149:153:99:3009,359,0 chrXII 375089 . G C 3059 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=35.67;MQ0=0;QD=19.61;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3092,368,0 chrXII 375099 . T C 4000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.0111;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;MQRankSum=-0.263;QD=20.83;ReadPosRankSum=1.714;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4000,473,0 chrXII 375126 . T C 5655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.376;DP=255;Dels=0.00;FS=10.005;HaplotypeScore=11.9700;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;MQRankSum=0.369;QD=22.18;ReadPosRankSum=4.465;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:7,246:255:99:5655,633,0 chrXII 375154 . A G 8067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.776;DP=339;Dels=0.00;FS=16.558;HaplotypeScore=26.8344;MLEAC=2;MLEAF=1.00;MQ=37.97;MQ0=0;MQRankSum=-1.158;QD=23.80;ReadPosRankSum=2.949;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:3,333:339:99:8067,882,0 chrXII 375271 . A G 6638.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=364;Dels=0.00;FS=8.621;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=0;MQRankSum=-0.200;QD=18.24;ReadPosRankSum=1.723;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,363:364:99:6638,753,0 chrXII 375290 . C T 3822.01 SnpCluster AC=2;AF=1.00;AN=2;DP=329;Dels=0.01;FS=0.000;HaplotypeScore=13.9094;MLEAC=2;MLEAF=1.00;MQ=34.83;MQ0=0;QD=11.62;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,325:327:99:3822,423,0 chrXII 375294 . T C 2861 SnpCluster AC=2;AF=1.00;AN=2;DP=305;Dels=0.01;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;QD=9.38;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,303:303:99:2894,339,0 chrXII 375295 . T G 2566 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=295;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=33.46;MQ0=0;MQRankSum=-0.656;QD=8.70;ReadPosRankSum=1.626;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,292:293:99:2599,306,0 chrXII 375302 . C T 2257 SnpCluster AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=8.5207;MLEAC=2;MLEAF=1.00;MQ=29.98;MQ0=0;QD=7.35;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,307:307:99:2290,252,0 chrXII 375309 . C T 1809 SnpCluster AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=185.5347;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=6.53;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:1842,204,0 chrXII 375310 . G A 1759 SnpCluster AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=186.5263;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=6.35;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:1792,201,0 chrXII 375322 . T A 872.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.003;DP=407;Dels=0.00;FS=16.989;HaplotypeScore=379.5900;MLEAC=1;MLEAF=0.500;MQ=28.39;MQ0=0;MQRankSum=-0.251;QD=2.14;ReadPosRankSum=16.900;SB=-1.154e+03 GT:AD:DP:GQ:PL 0/1:215,192:407:99:902,0,104 chrXII 375325 . A G 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-15.326;DP=529;Dels=0.00;FS=82.594;HaplotypeScore=380.1638;MLEAC=1;MLEAF=0.500;MQ=28.49;MQ0=0;MQRankSum=-1.693;QD=0.09;ReadPosRankSum=-3.984;SB=-3.440e+02 GT:AD:DP:GQ:PL 0/1:315,214:529:78:78,0,1143 chrXII 375329 . C T 1364.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=14.455;DP=546;Dels=0.00;FS=81.137;HaplotypeScore=9.0591;MLEAC=1;MLEAF=0.500;MQ=28.58;MQ0=0;MQRankSum=1.593;QD=2.50;ReadPosRankSum=4.151;SB=-3.099e+03 GT:AD:DP:GQ:PL 0/1:223,322:546:99:1394,0,138 chrXII 375353 . T C 2863.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.164;DP=698;Dels=0.00;FS=157.750;HaplotypeScore=8.3004;MLEAC=1;MLEAF=0.500;MQ=28.67;MQ0=0;MQRankSum=0.581;QD=4.10;ReadPosRankSum=-19.967;SB=-5.317e+03 GT:AD:DP:GQ:PL 0/1:232,465:698:66:2893,0,66 chrXII 375370 . G A 3574.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=16.534;DP=735;Dels=0.00;FS=260.985;HaplotypeScore=57.7649;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;MQRankSum=1.900;QD=4.86;ReadPosRankSum=-5.232;SB=-4.953e+03 GT:AD:DP:GQ:PL 1/1:230,505:735:33:3574,33,0 chrXII 375377 . C T 1723.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.776;DP=569;Dels=0.00;FS=322.116;HaplotypeScore=77.6244;MLEAC=1;MLEAF=0.500;MQ=28.63;MQ0=0;MQRankSum=1.477;QD=3.03;ReadPosRankSum=13.712;SB=-2.343e+03 GT:AD:DP:GQ:PL 0/1:229,339:568:99:1753,0,104 chrXII 375378 . C T 80.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.448;DP=568;Dels=0.00;FS=327.329;HaplotypeScore=82.3710;MLEAC=1;MLEAF=0.500;MQ=28.63;MQ0=0;MQRankSum=-1.633;QD=0.14;ReadPosRankSum=-15.322;SB=-1.450e+02 GT:AD:DP:GQ:PL 0/1:343,225:568:99:110,0,1665 chrXII 375379 . A C 1393.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.271;DP=568;Dels=0.00;FS=246.479;HaplotypeScore=83.3626;MLEAC=1;MLEAF=0.500;MQ=28.63;MQ0=0;MQRankSum=1.294;QD=2.45;ReadPosRankSum=17.127;SB=-2.272e+03 GT:AD:DP:GQ:PL 0/1:240,326:568:98:1423,0,98 chrXII 375380 . C T 2107 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.448;DP=566;Dels=0.00;FS=2.249;HaplotypeScore=81.7852;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;MQRankSum=-0.564;QD=3.72;ReadPosRankSum=0.289;SB=-7.042e+03 GT:AD:DP:GQ:PL 1/1:3,551:566:99:2140,266,0 chrXII 375384 . C T 2140.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.229;DP=568;Dels=0.00;FS=327.701;HaplotypeScore=187.3309;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=0;MQRankSum=2.646;QD=3.77;ReadPosRankSum=19.515;SB=-2.267e+03 GT:AD:DP:GQ:PL 0/1:228,340:568:32:2170,0,32 chrXII 375386 . T C 2457.64 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.894;DP=561;Dels=0.00;FS=334.748;HaplotypeScore=187.5620;MLEAC=1;MLEAF=0.500;MQ=29.45;MQ0=0;MQRankSum=1.973;QD=4.38;ReadPosRankSum=18.311;SB=-2.288e+03 GT:AD:DP:GQ:PL 0/1:213,348:561:5:2487,0,5 chrXII 375388 . A G 3360.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=544;Dels=0.00;FS=4.783;HaplotypeScore=170.0741;MLEAC=2;MLEAF=1.00;MQ=29.90;MQ0=0;MQRankSum=0.204;QD=6.18;ReadPosRankSum=2.144;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:5,358:544:99:3360,378,0 chrXII 375412 . A G 5301.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.638;DP=529;Dels=0.00;FS=0.000;HaplotypeScore=14.3806;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;MQRankSum=0.772;QD=10.02;ReadPosRankSum=3.823;SB=-3.560e+03 GT:AD:DP:GQ:PL 1/1:5,519:529:99:5301,567,0 chrXII 375438 . T C 6907.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=565;Dels=0.00;FS=6.765;HaplotypeScore=19.8854;MLEAC=2;MLEAF=1.00;MQ=40.13;MQ0=0;MQRankSum=1.370;QD=12.22;ReadPosRankSum=1.683;SB=-3.251e+03 GT:AD:DP:GQ:PL 1/1:1,564:565:99:6907,765,0 chrXII 375556 . T C 6429.01 PASS AC=2;AF=1.00;AN=2;DP=352;Dels=0.00;FS=0.000;HaplotypeScore=35.8129;MLEAC=2;MLEAF=1.00;MQ=37.99;MQ0=0;QD=18.26;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,349:352:99:6429,720,0 chrXII 375574 . T G 5456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=276;Dels=0.00;FS=5.481;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=40.13;MQ0=0;MQRankSum=-1.197;QD=19.77;ReadPosRankSum=1.694;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:1,271:276:99:5456,594,0 chrXII 375697 . G A 3547.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.88;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3547,375,0 chrXII 375724 . C T 3029 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.11;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3062,318,0 chrXII 375813 . G A 3482.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.4992;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.87;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3482,366,0 chrXII 375973 . C T 2714 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.02;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2747,288,0 chrXII 376012 . C T 3116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.097;DP=121;Dels=0.00;FS=3.310;HaplotypeScore=5.1295;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.646;QD=25.75;ReadPosRankSum=-0.722;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3149,316,0 chrXII 376222 . C T 3582.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3582,378,0 chrXII 376303 . G A 3374.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.27;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3374,360,0 chrXII 376495 . C T 3103 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.87;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3136,336,0 chrXII 376585 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.80;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3451,358,0 chrXII 376900 . A G 4043.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.97;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4043,441,0 chrXII 376993 . C G 6084.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=8.9816;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.96;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:6084,666,0 chrXII 377318 . C A 4054.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.72;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4054,418,0 chrXII 377477 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=16.9712;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.31;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3659,399,0 chrXII 377512 . C T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.16;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3406,352,0 chrXII 377522 . G T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.61;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3451,381,0 chrXII 377564 . T C 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=185;Dels=0.00;FS=3.382;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=-0.918;QD=20.08;ReadPosRankSum=1.656;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:1,182:185:99:3715,414,0 chrXII 377594 . T C 3837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-0.480;QD=21.32;ReadPosRankSum=1.713;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:1,176:180:99:3837,420,0 chrXII 377619 . T G 2944 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=18.40;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:2977,324,0 chrXII 377629 . A G 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=144;Dels=0.00;FS=10.075;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=0.406;QD=18.78;ReadPosRankSum=2.923;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:2738,300,0 chrXII 377691 . A G 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=137;Dels=0.01;FS=3.076;HaplotypeScore=12.9505;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.646;QD=18.45;ReadPosRankSum=1.680;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2560,279,0 chrXII 377739 . A G 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=7.6316;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-1.296;QD=21.93;ReadPosRankSum=1.678;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2840,309,0 chrXII 377913 . C G 3571.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.75;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:3571,390,0 chrXII 377948 . T A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=25.71;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3651,379,0 chrXII 378020 . A C 3720.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.8115;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.82;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,159:163:99:3720,411,0 chrXII 378215 . T C 3776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=190;Dels=0.00;FS=3.026;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-1.170;QD=19.87;ReadPosRankSum=2.294;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3776,423,0 chrXII 378221 . G C 4225.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.81;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4225,456,0 chrXII 378260 . T C 4766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.9322;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.146;QD=21.00;ReadPosRankSum=1.717;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4766,522,0 chrXII 378360 . A G 4772.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.7469;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.62;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4772,508,0 chrXII 378380 . A T 5376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=229;Dels=0.00;FS=10.092;HaplotypeScore=11.4388;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.552;QD=23.48;ReadPosRankSum=2.310;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:5376,565,0 chrXII 378437 . A G 5454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=241;Dels=0.00;FS=6.446;HaplotypeScore=9.9304;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-0.484;QD=22.63;ReadPosRankSum=2.429;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:2,239:241:99:5454,597,0 chrXII 379034 . T C 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=143;Dels=0.00;FS=9.219;HaplotypeScore=9.8797;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.693;QD=23.48;ReadPosRankSum=2.893;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:3,138:143:99:3357,369,0 chrXII 379144 . A G 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=145;Dels=0.00;FS=5.468;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.840;QD=22.59;ReadPosRankSum=2.896;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3276,351,0 chrXII 379448 . T A 2916 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2949,318,0 chrXII 379562 . T A 3030 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.34;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3063,327,0 chrXII 379575 . G C 2740 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.00;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2773,297,0 chrXII 379786 . G C 3055 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=22.80;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3088,336,0 chrXII 379794 . A G 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.3426;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=0.685;QD=21.94;ReadPosRankSum=1.707;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3083,333,0 chrXII 379874 . T G 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.0207;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.223;QD=21.64;ReadPosRankSum=1.676;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2738,300,0 chrXII 379914 . A G 2859 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.0888;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.63;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2892,312,0 chrXII 380051 . T C 4130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-0.713;QD=24.15;ReadPosRankSum=1.651;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4130,447,0 chrXII 380114 . A G 4113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=181;Dels=0.00;FS=3.860;HaplotypeScore=9.0643;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.501;QD=22.72;ReadPosRankSum=1.713;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4113,453,0 chrXII 380294 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=19.24;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3559,373,0 chrXII 380306 . C G 3178 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.0252;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=17.56;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3211,354,0 chrXII 380836 . G A 3364.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=26.28;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3364,346,0 chrXII 380887 . A T 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=133;Dels=0.00;FS=3.457;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.612;QD=20.56;ReadPosRankSum=1.706;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2767,300,0 chrXII 380902 . T C 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=139;Dels=0.01;FS=5.273;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-2.278;QD=20.61;ReadPosRankSum=3.395;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:4,134:138:99:2898,309,0 chrXII 381256 . T C 4191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.7355;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.466;QD=23.03;ReadPosRankSum=1.694;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4191,462,0 chrXII 381370 . G C 4591.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.39;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4591,492,0 chrXII 382340 . G A 2863 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.37;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2896,300,0 chrXII 382405 . C T 3110 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.87;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3143,327,0 chrXII 382560 . T C 2883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=134;Dels=0.00;FS=6.527;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-1.266;QD=21.51;ReadPosRankSum=2.413;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2916,327,0 chrXII 382590 . T C 2779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.6072;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.176;QD=20.89;ReadPosRankSum=1.599;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2812,309,0 chrXII 382614 . C T 3036 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.49;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3069,313,0 chrXII 383137 . A G 2349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=102;Dels=0.02;FS=6.423;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-1.785;QD=23.03;ReadPosRankSum=2.401;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2382,255,0 chrXII 383155 . A G 2079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=98;Dels=0.00;FS=11.874;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.082;QD=21.21;ReadPosRankSum=2.928;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:3,95:98:99:2112,234,0 chrXII 383230 . A G 2878 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.7622;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.98;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2911,318,0 chrXII 383295 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3058,318,0 chrXII 383407 . T C 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=3.265;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-1.253;QD=22.45;ReadPosRankSum=1.676;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2794,303,0 chrXII 383499 . T C 2711 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2744,297,0 chrXII 383595 . T C 2597 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.64;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2630,279,0 chrXII 383611 . C A 2858 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.50;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2891,300,0 chrXII 383695 . G A 3164 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3197,345,0 chrXII 383932 . T C 4207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=177;Dels=0.00;FS=2.711;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.160;QD=23.77;ReadPosRankSum=2.394;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4207,459,0 chrXII 384348 . G A 4977.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.0509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-2.611e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4977,520,0 chrXII 384511 . G A 4012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.6388;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.040;QD=22.93;ReadPosRankSum=-0.358;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4012,421,0 chrXII 384729 . G A 3029 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=25.45;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3062,330,0 chrXII 384757 . C T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=27.13;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3446,358,0 chrXII 384821 . A G 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=3.979;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.245;QD=25.43;ReadPosRankSum=1.706;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3458,372,0 chrXII 385439 . T C 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.740;DP=156;Dels=0.00;FS=10.118;HaplotypeScore=18.1567;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.020;QD=19.62;ReadPosRankSum=2.914;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:3,148:156:99:3094,351,0 chrXII 385802 . G A 2590 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=24.43;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2623,270,0 chrXII 385902 . T C 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;MQRankSum=-0.319;QD=18.86;ReadPosRankSum=1.704;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2390,261,0 chrXII 385909 . T C 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;MQRankSum=-0.805;QD=18.99;ReadPosRankSum=1.705;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2445,267,0 chrXII 385938 . A G 2497 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=19.06;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2530,276,0 chrXII 385953 . A C 2151 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=17.21;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2184,237,0 chrXII 385960 . A G 2174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=125;Dels=0.00;FS=6.126;HaplotypeScore=5.1220;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;MQRankSum=0.423;QD=17.39;ReadPosRankSum=0.698;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2207,234,0 chrXII 386133 . G A 2812 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=23.24;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2845,300,0 chrXII 386191 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=22.65;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2207,237,0 chrXII 386192 . A C 2048 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=21.79;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2081,231,0 chrXII 386266 . A G 1697 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.6316;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.95;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1730,189,0 chrXII 386311 . A G 1640 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=67.6016;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.00;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1673,180,0 chrXII 386351 . G A 1881 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.39;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1914,195,0 chrXII 386700 . G A 4615.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.68;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4615,504,0 chrXII 387140 . A G 5320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.661;DP=234;Dels=0.00;FS=6.073;HaplotypeScore=20.8596;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.210;QD=22.74;ReadPosRankSum=2.867;SB=-2.957e+03 GT:AD:DP:GQ:PL 1/1:3,231:234:99:5320,571,0 chrXII 387438 . A G 2908 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.86;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2941,318,0 chrXII 387636 . C G 4054.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4585;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.17;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4054,453,0 chrXII 388273 . T C 2846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=7.909;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.112;QD=21.56;ReadPosRankSum=2.393;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2879,318,0 chrXII 388456 . C T 4173.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.7141;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.84;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4173,447,0 chrXII 389347 . C T 8304.01 filter AC=2;AF=1.00;AN=2;DP=371;Dels=0.00;FS=0.000;HaplotypeScore=27.1929;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=22.38;SB=-4.467e+03 GT:AD:DP:GQ:PL 1/1:0,369:371:99:8304,901,0 chrXII 389413 . T A 9707.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=420;Dels=0.00;FS=6.046;HaplotypeScore=33.2745;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.109;QD=23.11;ReadPosRankSum=2.853;SB=-5.186e+03 GT:AD:DP:GQ:PL 1/1:3,417:420:99:9707,1018,0 chrXII 389641 . G A 7086.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=32.4567;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.86;SB=-3.222e+03 GT:AD:DP:GQ:PL 1/1:0,310:310:99:7086,751,0 chrXII 389707 . G A 5807.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=26.6019;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.51;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,255:258:99:5807,630,0 chrXII 389815 . A G 5796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=275;Dels=0.00;FS=6.798;HaplotypeScore=14.5736;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-1.040;QD=21.08;ReadPosRankSum=2.432;SB=-3.159e+03 GT:AD:DP:GQ:PL 1/1:2,273:275:99:5796,657,0 chrXII 389841 . A G 5073.01 SnpCluster AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=18.18;SB=-3.327e+03 GT:AD:DP:GQ:PL 1/1:0,278:279:99:5073,546,0 chrXII 389845 . A G 4841.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.105;DP=279;Dels=0.00;FS=20.378;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;MQRankSum=-2.381;QD=17.35;ReadPosRankSum=4.166;SB=-3.340e+03 GT:AD:DP:GQ:PL 1/1:6,273:279:99:4841,531,0 chrXII 389851 . A G 5077.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.779;DP=284;Dels=0.00;FS=17.091;HaplotypeScore=9.8953;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=-0.730;QD=17.88;ReadPosRankSum=3.773;SB=-3.356e+03 GT:AD:DP:GQ:PL 1/1:5,276:284:99:5077,549,0 chrXII 389953 . A G 5018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.904;QD=21.82;ReadPosRankSum=1.642;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5018,555,0 chrXII 390016 . A G 5177.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.66;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5177,567,0 chrXII 390321 . C T 1052 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1085,117,0 chrXII 390677 . G T 2864 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=12.4868;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.03;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2897,309,0 chrXII 390724 . C T 3947.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.3493;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.69;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3947,406,0 chrXII 390805 . C T 3704.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.01;FS=0.000;HaplotypeScore=17.3300;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.93;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3704,405,0 chrXII 390856 . T C 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.661;QD=23.39;ReadPosRankSum=1.679;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4631,510,0 chrXII 390963 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=16.2593;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=17.25;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:2983,315,0 chrXII 391214 . C T 4135.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=21.99;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4135,459,0 chrXII 391232 . A T 4696.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.7988;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=22.91;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4696,490,0 chrXII 391265 . C A 4547.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=20.86;SB=-2.947e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4547,478,0 chrXII 391272 . T A 4302.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=20.10;SB=-2.853e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4302,456,0 chrXII 391324 . C T 4387.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.5495;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.94;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4387,460,0 chrXII 391455 . T C 4109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=202;Dels=0.00;FS=6.130;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=0.129;QD=20.34;ReadPosRankSum=2.351;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:2,198:202:99:4109,468,0 chrXII 391460 . T G 4221.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.5334;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=20.69;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4221,468,0 chrXII 391542 . G T 3976.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.39;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3976,412,0 chrXII 391581 . C G 3908.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.83;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3908,432,0 chrXII 391669 . G C 2902 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=20.88;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2935,315,0 chrXII 391675 . T C 2936 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=20.25;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2969,324,0 chrXII 391861 . C G 1905 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=14.54;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:1938,222,0 chrXII 391936 . T C 3523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=161;Dels=0.00;FS=2.560;HaplotypeScore=4.3540;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=-0.818;QD=21.88;ReadPosRankSum=2.881;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:3,157:161:99:3523,384,0 chrXII 391960 . G A 3270.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=20.31;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3270,357,0 chrXII 391967 . T C 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=157;Dels=0.00;FS=2.481;HaplotypeScore=5.2569;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=-1.763;QD=19.45;ReadPosRankSum=2.930;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:3087,336,0 chrXII 392012 . T C 3034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-1.183;QD=18.50;ReadPosRankSum=1.626;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3067,330,0 chrXII 392101 . G A 4706.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=23.07;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4706,496,0 chrXII 392112 . T C 4603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=202;Dels=0.00;FS=6.814;HaplotypeScore=9.4599;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=0.996;QD=22.79;ReadPosRankSum=2.413;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:4603,510,0 chrXII 392173 . C T 4045.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=22.72;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4045,421,0 chrXII 392292 . C T 3445.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=23.60;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3445,369,0 chrXII 392373 . C T 1578 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=74.1566;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;QD=16.10;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1611,177,0 chrXII 392407 . C A 1489 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.03;MQ0=0;QD=14.46;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1522,159,0 chrXII 392410 . G A 1510 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=0;QD=15.41;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1543,162,0 chrXII 392412 . T A 1450 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=2.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.01;MQ0=0;MQRankSum=1.654;QD=14.65;ReadPosRankSum=2.325;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1483,156,0 chrXII 392424 . A G 1411 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=0;QD=13.06;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1444,156,0 chrXII 392469 . A G 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=4.831;HaplotypeScore=111.7473;MLEAC=2;MLEAF=1.00;MQ=31.44;MQ0=0;MQRankSum=-1.708;QD=10.77;ReadPosRankSum=1.708;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:1606,174,0 chrXII 392474 . C T 1554 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.5326;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;QD=11.51;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1587,165,0 chrXII 392482 . C T 1375 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=105.6158;MLEAC=2;MLEAF=1.00;MQ=33.29;MQ0=0;QD=10.42;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1408,147,0 chrXII 392549 . G A 1698 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=21.22;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1731,183,0 chrXII 392576 . C T 1983 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=23.89;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,81:83:99:2016,210,0 chrXII 392605 . G A 1941 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=0;QD=22.31;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1974,210,0 chrXII 392647 . G A 2943 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;QD=23.54;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2976,312,0 chrXII 392702 . G A 2128 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.02;FS=0.000;HaplotypeScore=10.4607;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=17.59;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2161,225,0 chrXII 392793 . G T 2159 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.56;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2192,228,0 chrXII 393184 . G C 4769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.641;DP=201;Dels=0.00;FS=3.233;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.641;QD=23.73;ReadPosRankSum=-0.104;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4769,495,0 chrXII 393452 . G A 4257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.9798;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.617;QD=23.39;ReadPosRankSum=0.654;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4257,442,0 chrXII 393618 . T A 4111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=188;Dels=0.00;FS=6.673;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.335;QD=21.87;ReadPosRankSum=2.423;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:4111,427,0 chrXII 393632 . A G 3728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.8095;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.564;QD=20.71;ReadPosRankSum=1.673;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:1,175:180:99:3728,402,0 chrXII 393843 . A G 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.620;QD=21.22;ReadPosRankSum=1.682;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2961,321,0 chrXII 393979 . G T 2795 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.50;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2828,297,0 chrXII 394165 . C A 4052.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.01;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4052,424,0 chrXII 394237 . G A 3549.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.88;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3549,384,0 chrXII 394281 . A G 4737.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.92;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4737,510,0 chrXII 394534 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=7.4495;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.82;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3331,357,0 chrXII 394740 . C T 2342 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.96;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2375,252,0 chrXII 395771 . T G 3282.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.68;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3282,354,0 chrXII 395850 . C T 4243.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4243,439,0 chrXII 396529 . T C 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=4.002;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.495;QD=21.87;ReadPosRankSum=1.697;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2176,240,0 chrXII 396641 . A G 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.665;QD=22.49;ReadPosRankSum=1.698;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2349,252,0 chrXII 396805 . G A 2221 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.2639;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.90;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2254,243,0 chrXII 396982 . C A 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=140;Dels=0.00;FS=3.932;HaplotypeScore=10.9709;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.255;QD=24.71;ReadPosRankSum=1.707;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:3460,372,0 chrXII 397180 . A G 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=3.217;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.342;QD=24.17;ReadPosRankSum=1.712;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4157,462,0 chrXII 397246 . C T 4719.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.51;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4719,490,0 chrXII 397306 . C T 3773.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3773,420,0 chrXII 397756 . A G 2013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-1.595;QD=19.93;ReadPosRankSum=1.698;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2046,225,0 chrXII 397759 . A G 1985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=105;Dels=0.00;FS=3.046;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=-0.438;QD=18.90;ReadPosRankSum=2.355;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:2,102:105:99:2018,222,0 chrXII 398325 . A G 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=171;Dels=0.00;FS=2.567;HaplotypeScore=12.6873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.544;QD=21.70;ReadPosRankSum=2.888;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:3710,399,0 chrXII 398481 . T C 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=121;Dels=0.00;FS=8.653;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.661;QD=22.56;ReadPosRankSum=2.409;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2763,309,0 chrXII 398693 . T C 4556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.9667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.033;QD=24.63;ReadPosRankSum=2.940;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:3,181:185:99:4556,492,0 chrXII 398871 . T G 5925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=12.7971;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.820;QD=23.80;ReadPosRankSum=1.704;SB=-3.032e+03 GT:AD:DP:GQ:PL 1/1:1,247:249:99:5925,651,0 chrXII 398925 . G T 6695.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=16.6521;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.17;SB=-3.630e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:6695,691,0 chrXII 399251 . G A 4351.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.69;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4351,448,0 chrXII 399343 . T C 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.834;HaplotypeScore=10.3696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.128;QD=23.02;ReadPosRankSum=1.711;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3753,408,0 chrXII 399414 . G A 3952.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.7540;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3952,423,0 chrXII 399506 . G A 3883.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.2409;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.12;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3883,400,0 chrXII 399563 . G C 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=138;Dels=0.00;FS=3.108;HaplotypeScore=9.6018;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.398;QD=23.84;ReadPosRankSum=1.142;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,134:138:99:3290,357,0 chrXII 400358 . A G 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.686;QD=23.60;ReadPosRankSum=1.709;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3563,390,0 chrXII 400709 . T A 4156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.201;QD=25.19;ReadPosRankSum=1.605;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4156,456,0 chrXII 401097 . C T 4325.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.76;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4325,457,0 chrXII 401532 . C G 3004 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.01;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3037,330,0 chrXII 401664 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3244,342,0 chrXII 401704 . T C 3159 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3192,345,0 chrXII 401837 . G C 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.278;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.1995;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.732;QD=21.06;ReadPosRankSum=1.708;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3087,323,0 chrXII 402030 . G T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3561,370,0 chrXII 402455 . T C 2309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=3.751;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.747;QD=22.42;ReadPosRankSum=1.664;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2342,264,0 chrXII 402932 . T C 4420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.575;QD=25.11;ReadPosRankSum=1.712;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4420,483,0 chrXII 402998 . A G 4527.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.95;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4527,489,0 chrXII 403049 . G A 3928.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.5134;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.74;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3928,426,0 chrXII 403061 . A C 3742.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=19.19;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3742,417,0 chrXII 403089 . A G 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=200;Dels=0.00;FS=3.023;HaplotypeScore=15.3178;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.302;QD=19.11;ReadPosRankSum=2.400;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:3822,423,0 chrXII 403319 . G A 4153.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.8378;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.33;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4153,444,0 chrXII 403333 . C T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.46;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3605,387,0 chrXII 403476 . C T 3708.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.08;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3708,382,0 chrXII 403884 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.98;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3249,360,0 chrXII 403898 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.68;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3516,361,0 chrXII 404007 . C T 4765.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.0541;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.21;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4765,493,0 chrXII 404056 . C T 4045.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.52;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4045,435,0 chrXII 404233 . A T 4647.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=16.5899;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.24;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4647,484,0 chrXII 404308 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=14.0469;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.70;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,145:149:99:3268,363,0 chrXII 404508 . C A 3080 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.4546;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.06;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3113,336,0 chrXII 404565 . G C 2559 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.06;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2592,294,0 chrXII 405138 . C A 5842.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=9.0435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-3.174e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5842,601,0 chrXII 405208 . A C 4826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=210;Dels=0.00;FS=3.011;HaplotypeScore=15.0629;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.536;QD=22.98;ReadPosRankSum=2.401;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:2,204:210:99:4826,531,0 chrXII 405334 . C G 5993.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=22.8926;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-3.198e+03 GT:AD:DP:GQ:PL 1/1:0,249:252:99:5993,654,0 chrXII 405433 . A C 5727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=249;Dels=0.00;FS=4.006;HaplotypeScore=21.3717;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.923;QD=23.00;ReadPosRankSum=1.675;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:1,244:249:99:5727,621,0 chrXII 405472 . T A 5058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=207;Dels=0.00;FS=6.059;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.397;QD=24.43;ReadPosRankSum=2.878;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:5058,529,0 chrXII 405834 . C T 3298.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.61;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3298,342,0 chrXII 405942 . C G 3190 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.15;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3223,357,0 chrXII 406528 . G A 3805.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.0637;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.51;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3805,397,0 chrXII 406563 . G A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.02;FS=0.000;HaplotypeScore=5.6494;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.22;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3579,376,0 chrXII 406565 . A G 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.143;DP=175;Dels=0.00;FS=15.359;HaplotypeScore=7.2268;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-1.631;QD=19.06;ReadPosRankSum=4.068;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:6,167:175:99:3335,369,0 chrXII 406604 . C T 3621.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.6844;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.57;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3621,387,0 chrXII 406694 . C T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.0421;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3774,408,0 chrXII 407016 . G A 2832 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.0332;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.84;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2865,297,0 chrXII 407282 . A G 3041 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.7291;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=18.43;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3074,339,0 chrXII 407405 . A G 4140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=173;Dels=0.00;FS=3.114;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.734;QD=23.93;ReadPosRankSum=1.630;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:1,169:173:99:4140,450,0 chrXII 407445 . A G 3846.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.45;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3846,420,0 chrXII 407477 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.85;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3565,393,0 chrXII 407561 . C T 3369.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.6659;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.96;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3369,346,0 chrXII 407639 . A G 3489.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.57;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3489,375,0 chrXII 407663 . T C 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=140;Dels=0.00;FS=11.700;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.674;QD=21.57;ReadPosRankSum=2.948;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:3,133:140:99:3053,336,0 chrXII 407835 . C T 2992 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.13;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3025,315,0 chrXII 408015 . T G 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=153;Dels=0.00;FS=5.415;HaplotypeScore=14.3708;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.252;QD=23.88;ReadPosRankSum=2.888;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:3654,390,0 chrXII 408068 . A G 4325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=3.195;HaplotypeScore=10.4600;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.433;QD=22.41;ReadPosRankSum=1.714;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4325,477,0 chrXII 408160 . C A 4392.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.27;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4392,463,0 chrXII 408368 . G C 3564.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.60;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:3564,396,0 chrXII 408429 . A T 5436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=241;Dels=0.00;FS=6.186;HaplotypeScore=19.3527;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.114;QD=22.56;ReadPosRankSum=1.660;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5436,588,0 chrXII 408647 . G A 7057.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=9.7451;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.09;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:7057,730,0 chrXII 409269 . G A 2417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.768;DP=133;Dels=0.00;FS=4.371;HaplotypeScore=11.0550;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-1.035;QD=18.17;ReadPosRankSum=3.507;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:5,128:133:99:2450,282,0 chrXII 409270 . A G 2387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=133;Dels=0.03;FS=3.042;HaplotypeScore=11.0550;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-2.412;QD=17.95;ReadPosRankSum=2.373;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2420,282,0 chrXII 409417 . A G 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=167;Dels=0.00;FS=3.662;HaplotypeScore=14.1392;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.430;QD=21.41;ReadPosRankSum=1.711;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3575,390,0 chrXII 409752 . A G 3833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=171;Dels=0.00;FS=2.745;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.943;QD=22.42;ReadPosRankSum=2.216;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:2,166:171:99:3833,420,0 chrXII 410115 . C T 2236 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2269,249,0 chrXII 410525 . T C 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=3.741;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=1.147;QD=24.18;ReadPosRankSum=1.708;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3434,372,0 chrXII 410550 . T C 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.5584;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=1.189;QD=23.27;ReadPosRankSum=1.706;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3175,339,0 chrXII 410667 . A C 4538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.01;FS=3.742;HaplotypeScore=13.5177;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.325;QD=24.01;ReadPosRankSum=1.695;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4538,489,0 chrXII 410950 . T C 7119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=331;Dels=0.00;FS=6.001;HaplotypeScore=18.7536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.665;QD=21.51;ReadPosRankSum=2.948;SB=-3.756e+03 GT:AD:DP:GQ:PL 1/1:3,324:331:99:7119,801,0 chrXII 411601 . T C 3027 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;QD=15.68;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3060,345,0 chrXII 411634 . A G 2743 SnpCluster AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;QD=13.45;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:2776,318,0 chrXII 411637 . T C 2596 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=201;Dels=0.00;FS=6.086;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.03;MQ0=0;MQRankSum=-1.704;QD=12.92;ReadPosRankSum=2.425;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:2629,297,0 chrXII 411640 . C T 2495 SnpCluster AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.63;MQ0=0;QD=12.47;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:2528,276,0 chrXII 411643 . T C 2301 SnpCluster AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.48;MQ0=0;QD=11.92;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:2334,270,0 chrXII 411760 . T A 4156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=182;Dels=0.00;FS=2.888;HaplotypeScore=17.7689;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.130;QD=22.84;ReadPosRankSum=2.422;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4156,436,0 chrXII 411841 . T A 4545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=212;Dels=0.00;FS=3.031;HaplotypeScore=16.8067;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;MQRankSum=-1.500;QD=21.44;ReadPosRankSum=2.368;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4545,475,0 chrXII 411982 . C T 3936.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.5554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3936,417,0 chrXII 412228 . T C 3740.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3740,408,0 chrXII 412547 . A T 1603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=83;Dels=0.01;FS=6.056;HaplotypeScore=73.7533;MLEAC=2;MLEAF=1.00;MQ=37.62;MQ0=0;MQRankSum=-2.346;QD=19.31;ReadPosRankSum=2.914;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1636,174,0 chrXII 412562 . A G 204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.136;DP=73;Dels=0.00;FS=6.680;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=32.44;MQ0=0;MQRankSum=-0.555;QD=2.79;ReadPosRankSum=-5.631;SB=-7.014e+00 GT:AD:DP:GQ:PL 1/1:60,13:73:27:237,27,0 chrXII 412590 . T G 1374 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.19;MQ0=0;QD=17.84;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1407,153,0 chrXII 412603 . A T 1344 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;QD=14.93;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1377,150,0 chrXII 412612 . C G 1306 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=0;QD=15.55;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1339,144,0 chrXII 412641 . A G 1367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=0.962;QD=16.88;ReadPosRankSum=1.689;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1400,153,0 chrXII 412752 . C A 1580 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.57;MQ0=0;QD=22.25;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1613,177,0 chrXII 412754 . G T 1570 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=0;QD=22.75;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1603,171,0 chrXII 412803 . C T 1364 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=36.60;MQ0=0;QD=22.00;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1397,156,0 chrXII 412826 . T A 1537 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;QD=19.71;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1570,171,0 chrXII 412827 . C T 1547 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=19.58;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1580,171,0 chrXII 412896 . T C 2148 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=20.07;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2181,234,0 chrXII 412966 . C T 159.06 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=52.2687;MLEAC=2;MLEAF=1.00;MQ=32.69;MQ0=0;QD=1.64;SB=-7.181e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:21:192,21,0 chrXII 413032 . A G 2231 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.40;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2264,246,0 chrXII 413139 . C G 3607.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.6921;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=23.12;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3607,390,0 chrXII 413585 . G A 5383.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.82;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5383,559,0 chrXII 413957 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.9266;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.38;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3426,360,0 chrXII 414127 . C T 2889 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.3769;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.07;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2922,306,0 chrXII 414591 . G A 5141.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.95;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5141,535,0 chrXII 414750 . A C 3325.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.03;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3325,378,0 chrXII 414993 . G C 3158 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3191,345,0 chrXII 415314 . T A 3792.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.3056;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.98;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3792,394,0 chrXII 415537 . A G 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.714;QD=22.73;ReadPosRankSum=2.333;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2920,312,0 chrXII 416026 . C T 4343.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.86;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4343,457,0 chrXII 416608 . T C 3647.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.94;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3647,402,0 chrXII 416803 . C T 5520.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=6.9356;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.40;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5520,580,0 chrXII 416817 . T C 5498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=15.2701;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.849;QD=20.90;ReadPosRankSum=1.705;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:5498,603,0 chrXII 416876 . C G 5540.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=7.8210;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=19.51;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,283:284:99:5540,630,0 chrXII 416918 . G A 6524.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=10.3486;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.72;SB=-3.640e+03 GT:AD:DP:GQ:PL 1/1:0,269:275:99:6524,682,0 chrXII 417289 . G A 7159.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=12.5953;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.57;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,279:280:99:7159,745,0 chrXII 417465 . G A 5350.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=14.3317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5350,559,0 chrXII 417560 . C T 6781.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=8.8087;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.57;SB=-3.004e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:6781,709,0 chrXII 417956 . G A 4682.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.51;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4682,504,0 chrXII 418313 . A G 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=163;Dels=0.00;FS=3.009;HaplotypeScore=5.1295;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.465;QD=22.94;ReadPosRankSum=2.389;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:3739,417,0 chrXII 418391 . T C 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=173;Dels=0.00;FS=3.220;HaplotypeScore=22.7623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.611;QD=21.65;ReadPosRankSum=1.712;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:1,169:173:99:3745,420,0 chrXII 418481 . T C 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=159;Dels=0.00;FS=2.968;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=-0.397;QD=22.74;ReadPosRankSum=2.294;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3615,390,0 chrXII 419039 . C T 5122.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.39;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5122,549,0 chrXII 420617 . C T 4675.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.6752;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4675,493,0 chrXII 420674 . T C 3737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=169;Dels=0.00;FS=3.954;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.281;QD=22.11;ReadPosRankSum=1.712;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3737,414,0 chrXII 421083 . G A 6554.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=20.3963;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=26.22;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:6554,682,0 chrXII 421150 . T C 6583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.999;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=14.7302;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.300;QD=23.85;ReadPosRankSum=1.043;SB=-3.423e+03 GT:AD:DP:GQ:PL 1/1:2,272:276:99:6583,702,0 chrXII 421364 . G A 3686.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.25;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3686,382,0 chrXII 421470 . A G 2105 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=23.39;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2138,231,0 chrXII 421733 . C T 3044 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.97;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3077,327,0 chrXII 422001 . T C 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=18.5415;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.702;QD=22.01;ReadPosRankSum=1.710;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3478,381,0 chrXII 422168 . C A 410 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=151.8016;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=2.27;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:48:443,48,0 chrXII 422366 . C T 3852.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.85;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3852,397,0 chrXII 422424 . A G 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=123;Dels=0.00;FS=6.273;HaplotypeScore=8.1349;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.050;QD=22.30;ReadPosRankSum=2.410;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2776,300,0 chrXII 422502 . G A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.42;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3749,411,0 chrXII 422520 . C T 4092.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.48;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4092,435,0 chrXII 422565 . A C 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=160;Dels=0.00;FS=2.874;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.070;QD=19.16;ReadPosRankSum=2.419;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3098,345,0 chrXII 422621 . T G 2816 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.35;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2849,306,0 chrXII 423150 . C G 3503.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.3956;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.89;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3503,399,0 chrXII 423180 . C T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.8669;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.75;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3424,366,0 chrXII 423347 . T C 3588.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.4060;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.01;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3588,396,0 chrXII 423416 . C T 2615 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.35;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2648,282,0 chrXII 423821 . G A 7568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.721;DP=307;Dels=0.00;FS=3.067;HaplotypeScore=14.6345;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=1.483;QD=24.65;ReadPosRankSum=-0.577;SB=-3.971e+03 GT:AD:DP:GQ:PL 1/1:1,305:307:99:7568,793,0 chrXII 423854 . G C 7712.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=14.2860;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.80;SB=-4.207e+03 GT:AD:DP:GQ:PL 1/1:0,323:324:99:7712,829,0 chrXII 424103 . A G 5824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.432;DP=299;Dels=0.00;FS=5.197;HaplotypeScore=5.3896;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=0.435;QD=19.48;ReadPosRankSum=3.327;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:5,294:299:99:5824,648,0 chrXII 424104 . C A 6123.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.41;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:0,299:300:99:6123,652,0 chrXII 424138 . T C 5862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=313;Dels=0.00;FS=13.465;HaplotypeScore=27.4034;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-0.740;QD=18.73;ReadPosRankSum=2.920;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:3,310:313:99:5862,675,0 chrXII 424441 . A G 9922.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=435;Dels=0.00;FS=6.897;HaplotypeScore=22.7144;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;MQRankSum=0.716;QD=22.81;ReadPosRankSum=2.393;SB=-5.363e+03 GT:AD:DP:GQ:PL 1/1:2,431:435:99:9922,1096,0 chrXII 424491 . T C 11309.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=488;Dels=0.00;FS=14.529;HaplotypeScore=26.8792;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.485;QD=23.17;ReadPosRankSum=3.394;SB=-5.296e+03 GT:AD:DP:GQ:PL 1/1:4,482:488:99:11309,1246,0 chrXII 424606 . A C 6788.01 PASS AC=2;AF=1.00;AN=2;DP=357;Dels=0.00;FS=0.000;HaplotypeScore=11.0070;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=19.01;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:0,357:357:99:6788,765,0 chrXII 424898 . C G 5013.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.3992;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.10;SB=-2.743e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5013,546,0 chrXII 424990 . T C 3856.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.80;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3856,411,0 chrXII 425109 . C G 3932.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=16.6679;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.13;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,165:170:99:3932,435,0 chrXII 425404 . A G 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.5555;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.921;QD=21.14;ReadPosRankSum=1.688;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3361,363,0 chrXII 425696 . C T 3437.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.6919;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.07;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3437,360,0 chrXII 425939 . A T 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.893;QD=25.77;ReadPosRankSum=1.711;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:4149,430,0 chrXII 426754 . A C 559 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=0;QD=23.29;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:63:592,63,0 chrXII 426760 . G A 485 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.81;MQ0=0;QD=24.25;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:54:518,54,0 chrXII 426761 . G T 466 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.81;MQ0=0;QD=23.30;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:54:499,54,0 chrXII 426793 . A T 221.01 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.39;MQ0=0;QD=18.42;SB=-3.002e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:27:254,27,0 chrXII 426805 . T G 192.03 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.46;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:24:225,24,0 chrXII 426814 . C T 255 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.62;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:30:288,30,0 chrXII 426881 . G A 1167 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=24.83;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1200,126,0 chrXII 426989 . C T 2079 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=21.43;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2112,219,0 chrXII 426999 . A T 1781 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=20.01;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1814,192,0 chrXII 427050 . G C 972 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=0;QD=12.00;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1005,111,0 chrXII 427051 . G A 998 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.08;MQ0=0;QD=12.63;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1031,108,0 chrXII 427079 . T A 1142 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;QD=14.27;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1175,120,0 chrXII 427110 . C A 1401 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.61;MQ0=0;QD=14.15;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1434,150,0 chrXII 427115 . T C 1404 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;QD=14.94;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1437,156,0 chrXII 427205 . A T 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;MQRankSum=1.552;QD=21.20;ReadPosRankSum=-0.361;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2089,216,0 chrXII 427223 . T C 1993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.126;DP=103;Dels=0.00;FS=16.501;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;MQRankSum=-1.489;QD=19.35;ReadPosRankSum=3.369;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:4,97:103:99:2026,225,0 chrXII 427327 . T G 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=127;Dels=0.00;FS=2.757;HaplotypeScore=10.6437;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-0.029;QD=24.59;ReadPosRankSum=2.411;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:3156,345,0 chrXII 428048 . C T 3483.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.5319;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.76;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3483,375,0 chrXII 428127 . C T 2890 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.91;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2923,306,0 chrXII 428166 . G C 3383.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.86;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3383,372,0 chrXII 428198 . G T 3918.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.28;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3918,409,0 chrXII 428263 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=138;Dels=0.00;FS=3.712;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.706;QD=23.75;ReadPosRankSum=1.680;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,133:138:99:3278,366,0 chrXII 428333 . C G 2790 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.80;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2823,312,0 chrXII 428405 . T A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.17;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3800,397,0 chrXII 428556 . G A 5268.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.57;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5268,550,0 chrXII 428888 . C T 4859.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.2338;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4859,508,0 chrXII 429078 . A G 2470 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2503,276,0 chrXII 429313 . G A 2572 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0938;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.56;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2605,270,0 chrXII 429498 . C G 2956 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.84;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2989,330,0 chrXII 429550 . T C 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=130;Dels=0.00;FS=8.218;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.740;QD=23.22;ReadPosRankSum=2.411;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:2,126:130:99:3051,330,0 chrXII 429646 . A G 2499 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=21.00;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2532,279,0 chrXII 429647 . T A 2741 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=22.47;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2774,291,0 chrXII 429675 . C T 3068 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.76;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3101,327,0 chrXII 430007 . A G 3518.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.3574;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.10;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3518,390,0 chrXII 430049 . G A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.10;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3760,405,0 chrXII 430241 . G A 4571.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.97;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4571,466,0 chrXII 430703 . C A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.09;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3833,414,0 chrXII 430878 . T C 5172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=17.1179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.282;QD=24.87;ReadPosRankSum=1.715;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:5172,556,0 chrXII 431426 . A T 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.119;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.501;QD=23.17;ReadPosRankSum=1.646;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2837,300,0 chrXII 431555 . C A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.8950;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.54;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3508,366,0 chrXII 431739 . T C 4135.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.63;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4135,450,0 chrXII 431853 . G A 2986 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7668;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.18;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3019,330,0 chrXII 431957 . G A 2874 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.7537;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.28;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2907,312,0 chrXII 432798 . A G 4101.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.2992;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.85;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:4101,444,0 chrXII 432936 . G C 3065 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.87;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,129:134:99:3098,345,0 chrXII 433182 . C A 3555.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=25.21;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3555,370,0 chrXII 433420 . G C 5215.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=17.1722;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.11;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5215,585,0 chrXII 433567 . T C 4685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=220;Dels=0.00;FS=5.571;HaplotypeScore=10.0256;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.039;QD=21.30;ReadPosRankSum=1.716;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4685,528,0 chrXII 433606 . G C 3628.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.82;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3628,393,0 chrXII 433672 . A G 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.720;DP=141;Dels=0.00;FS=2.575;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.504;QD=22.18;ReadPosRankSum=2.950;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:3161,345,0 chrXII 433914 . T C 1348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=5.538;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.509;QD=19.82;ReadPosRankSum=1.681;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1381,156,0 chrXII 434144 . C G 1264 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=16.21;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1297,141,0 chrXII 434151 . C T 1451 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=17.27;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1484,156,0 chrXII 434305 . C T 2908 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=25.29;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2941,306,0 chrXII 434356 . G A 3302.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=26.21;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3302,345,0 chrXII 434605 . G A 3078 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.62;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3111,324,0 chrXII 435003 . G A 3859.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.56;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3859,408,0 chrXII 435124 . A G 3119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=147;Dels=0.00;FS=2.725;HaplotypeScore=13.2211;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.384;QD=21.22;ReadPosRankSum=2.398;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:2,142:147:99:3152,348,0 chrXII 435366 . G A 3163 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.3159;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.96;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3196,336,0 chrXII 435396 . C T 3751.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.69;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3751,382,0 chrXII 435552 . T C 3106 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=22.03;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3139,345,0 chrXII 435615 . C T 2578 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.85;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2611,273,0 chrXII 435711 . G A 3010 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;QD=21.50;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3043,321,0 chrXII 435717 . A G 2860 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=0;MQRankSum=-0.739;QD=21.03;ReadPosRankSum=1.707;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2893,312,0 chrXII 435721 . T C 2640 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.50;MQ0=0;QD=19.70;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2673,288,0 chrXII 435723 . G A 2578 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.13;MQ0=0;QD=19.53;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2611,285,0 chrXII 435756 . A G 1550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=102;Dels=0.00;FS=9.968;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;MQRankSum=-2.198;QD=15.20;ReadPosRankSum=2.872;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:3,99:102:99:1583,177,0 chrXII 435774 . C T 1769 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=17.87;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1802,189,0 chrXII 435837 . C T 2996 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=26.05;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:3029,309,0 chrXII 435951 . G A 2832 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=23.21;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2865,306,0 chrXII 435960 . T A 2550 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;QD=20.90;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2583,282,0 chrXII 436062 . T G 3158 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=25.26;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3191,345,0 chrXII 436084 . C T 2704 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.14;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2737,279,0 chrXII 436124 . A C 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=111;Dels=0.00;FS=2.947;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=0.033;QD=22.32;ReadPosRankSum=2.339;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2511,270,0 chrXII 436179 . T C 2567 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=21.39;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2600,285,0 chrXII 436187 . G A 2684 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=22.75;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2717,282,0 chrXII 436323 . A G 2072 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.58;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2105,237,0 chrXII 436389 . A G 2579 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.86;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2612,294,0 chrXII 436416 . A G 2373 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=22.39;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2406,261,0 chrXII 436435 . A C 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=3.915;HaplotypeScore=7.7819;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=1.629;QD=22.23;ReadPosRankSum=1.698;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,100:104:99:2345,255,0 chrXII 436622 . A T 2971 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=24.76;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3004,312,0 chrXII 436725 . G A 2815 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.27;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2848,306,0 chrXII 436791 . T C 2373 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.8242;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.26;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2406,261,0 chrXII 437175 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.10;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2920,300,0 chrXII 437267 . G A 3068 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.16;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3101,324,0 chrXII 437355 . A G 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.108;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.372;QD=22.11;ReadPosRankSum=1.681;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3040,342,0 chrXII 437551 . A T 2791 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.1178;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=24.27;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2824,303,0 chrXII 437563 . A G 2343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=-1.455;QD=23.43;ReadPosRankSum=1.697;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2376,258,0 chrXII 437568 . C T 2224 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=22.02;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2257,237,0 chrXII 437919 . T C 4382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.00;FS=3.297;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.276;QD=23.31;ReadPosRankSum=1.677;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4382,468,0 chrXII 438147 . G A 3763.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.7446;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.37;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3763,396,0 chrXII 438212 . C T 4271.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.34;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4271,445,0 chrXII 438353 . T A 3078 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.24;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3111,322,0 chrXII 438493 . C T 4279.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.59;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4279,445,0 chrXII 438775 . G C 4040.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.0737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:4040,441,0 chrXII 438877 . A G 5020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=215;Dels=0.00;FS=3.284;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.024;QD=23.35;ReadPosRankSum=1.700;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:5020,543,0 chrXII 438924 . G A 4112.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.5220;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.47;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4112,427,0 chrXII 439092 . A G 4636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=196;Dels=0.00;FS=3.003;HaplotypeScore=12.1791;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.487;QD=23.65;ReadPosRankSum=2.399;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:2,192:196:99:4636,501,0 chrXII 439126 . A G 4076.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.70;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4076,450,0 chrXII 439182 . A C 5105.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=18.9283;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.39;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:5105,570,0 chrXII 439311 . C T 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.0650;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.707;QD=22.65;ReadPosRankSum=1.176;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3182,342,0 chrXII 439413 . C A 3277.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.10;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3277,340,0 chrXII 439452 . C T 3018 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.74;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3051,321,0 chrXII 439587 . T C 3273.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.38;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3273,360,0 chrXII 439647 . C T 3799.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=23.02;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3799,399,0 chrXII 439662 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=0.697;QD=20.99;ReadPosRankSum=1.710;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3265,360,0 chrXII 440337 . G A 1822 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.24;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1855,201,0 chrXII 440952 . G A 5559.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=13.4126;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.80;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5559,580,0 chrXII 441099 . C T 4763.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.46;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4763,519,0 chrXII 441152 . G A 3122 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=11.6054;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.81;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3155,327,0 chrXII 441596 . G T 2675 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=22.86;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2708,279,0 chrXII 441612 . A G 2909 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.55;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2942,327,0 chrXII 441632 . G C 2700 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.61;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2733,300,0 chrXII 442034 . G A 5277.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5277,547,0 chrXII 443030 . C T 5065.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=26.24;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5065,538,0 chrXII 443164 . C G 4288.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.5718;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.33;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4288,480,0 chrXII 443460 . G A 3067 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.72;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3100,333,0 chrXII 443985 . A T 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=171;Dels=0.00;FS=7.076;HaplotypeScore=10.4808;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.659;QD=25.49;ReadPosRankSum=2.392;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:4359,460,0 chrXII 444126 . A T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.0015;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.18;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3399,352,0 chrXII 444168 . T C 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=144;Dels=0.00;FS=4.960;HaplotypeScore=11.8511;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.307;QD=22.37;ReadPosRankSum=1.708;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3254,351,0 chrXII 444569 . C T 3020 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.02;FS=0.000;HaplotypeScore=12.4868;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.88;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3053,321,0 chrXII 444593 . G A 2901 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.78;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2934,306,0 chrXII 444668 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.79;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3245,342,0 chrXII 444770 . C T 3811.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=25.24;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3811,394,0 chrXII 444806 . T C 3859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=1.687;QD=25.06;ReadPosRankSum=1.710;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3859,426,0 chrXII 445043 . G A 3199 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.8545;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.06;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3232,342,0 chrXII 445082 . A C 3070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.372;QD=18.72;ReadPosRankSum=1.711;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3103,339,0 chrXII 445085 . C T 3123 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=18.70;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3156,330,0 chrXII 445132 . G A 3176 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=19.48;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3209,333,0 chrXII 445179 . C T 3400.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3400,369,0 chrXII 445227 . T C 3058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=142;Dels=0.00;FS=3.327;HaplotypeScore=7.9145;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.415;QD=21.54;ReadPosRankSum=1.659;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3091,348,0 chrXII 445298 . G T 2573 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.5832;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=22.97;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2606,282,0 chrXII 445923 . A G 5142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=16.9499;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.133;QD=21.16;ReadPosRankSum=1.704;SB=-3.041e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:5142,564,0 chrXII 446323 . T G 5060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.775;DP=225;Dels=0.00;FS=17.005;HaplotypeScore=12.9412;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.336;QD=22.49;ReadPosRankSum=3.803;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:5,218:225:99:5060,544,0 chrXII 446751 . T C 3494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.781;QD=22.69;ReadPosRankSum=1.709;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3494,378,0 chrXII 446829 . G A 3917.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3917,414,0 chrXII 447045 . G T 3101 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.38;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3134,333,0 chrXII 447548 . A G 2600 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2633,282,0 chrXII 447928 . T C 3361.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.18;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3361,369,0 chrXII 448114 . G A 5920.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=12.6460;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.67;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:0,236:240:99:5920,619,0 chrXII 448167 . A G 5536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.391;DP=252;Dels=0.00;FS=12.361;HaplotypeScore=23.6303;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-1.746;QD=21.97;ReadPosRankSum=3.314;SB=-3.130e+03 GT:AD:DP:GQ:PL 1/1:4,245:252:99:5536,603,0 chrXII 448357 . T G 3478.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=18.90;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3478,381,0 chrXII 448760 . G A 3753.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=132.8167;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.90;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3753,391,0 chrXII 448838 . A C 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=131;Dels=0.00;FS=2.102;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=-1.582;QD=21.69;ReadPosRankSum=2.496;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:3,127:131:99:2874,288,0 chrXII 448855 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.9818;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=24.82;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3160,327,0 chrXII 449021 . C T 1650 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1683,189,0 chrXII 449028 . T A 1646 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=-1.627;QD=24.94;ReadPosRankSum=1.680;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1679,177,0 chrXII 449128 . T A 137.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;QD=15.24;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:170,18,0 chrXII 450041 . A T 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=4.741;HaplotypeScore=4.3707;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=-1.611;QD=23.28;ReadPosRankSum=1.708;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3329,345,0 chrXII 450044 . C T 3140 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.7933;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.43;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3173,336,0 chrXII 450065 . G A 2962 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.78;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2995,309,0 chrXII 450128 . C T 3562.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.08;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3562,370,0 chrXII 450178 . A T 4255.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.6704;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.90;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4255,450,0 chrXII 450246 . C G 4397.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=23.5199;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=24.16;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4397,477,0 chrXII 450631 . C A 2974 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3007,312,0 chrXII 450714 . A T 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=136;Dels=0.00;FS=7.782;HaplotypeScore=10.3719;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.193;QD=24.13;ReadPosRankSum=2.376;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3281,342,0 chrXII 450984 . C G 3904.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.5445;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.55;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,184:190:99:3904,432,0 chrXII 451457 . C T 909 filter AC=2;AF=1.00;AN=2;DP=874;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.26;MQ0=839;QD=1.04;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,874:874:99:942,102,0 chrXII 451643 . T C 498 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.92;MQ0=973;QD=0.50;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:17,983:1000:57:531,57,0 chrXII 459501 . A G 2699 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=83.5317;MLEAC=2;MLEAF=1.00;MQ=14.39;MQ0=766;QD=2.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,931:1000:99:2732,324,0 chrXII 459984 . T C 629.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;DP=1000;DS;Dels=0.00;FS=23.236;HaplotypeScore=102.8866;MLEAC=1;MLEAF=0.500;MQ=37.30;MQ0=0;MQRankSum=-1.850;QD=0.63;ReadPosRankSum=11.345;SB=-2.410e+02 GT:AD:DP:GQ:PL 0/1:933,66:1000:99:659,0,1634 chrXII 460103 . T C 15154.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=11.330;DP=1000;DS;Dels=0.00;FS=164.445;HaplotypeScore=231.4759;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;MQRankSum=3.130;QD=15.15;ReadPosRankSum=13.380;SB=-8.893e+03 GT:AD:DP:GQ:PL 1/1:68,931:1000:99:15154,1701,0 chrXII 460135 . A G 19956.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.240;DP=997;DS;Dels=0.00;FS=2.997;HaplotypeScore=5.0041;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;MQRankSum=1.597;QD=20.02;ReadPosRankSum=0.915;SB=-1.264e+04 GT:AD:DP:GQ:PL 1/1:2,993:997:99:19956,2254,0 chrXII 460152 . T G 20164.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.199;DP=1000;DS;Dels=0.00;FS=14.146;HaplotypeScore=6.2556;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=0;MQRankSum=0.276;QD=20.16;ReadPosRankSum=3.948;SB=-1.331e+04 GT:AD:DP:GQ:PL 1/1:9,991:1000:99:20164,2182,0 chrXII 460262 . G A 452.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.026;DP=1000;DS;Dels=0.00;FS=68.872;HaplotypeScore=791.8061;MLEAC=1;MLEAF=0.500;MQ=52.31;MQ0=0;MQRankSum=12.262;QD=0.45;ReadPosRankSum=-19.037;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:709,243:1000:99:482,0,9178 chrXII 460344 . G C 13186.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.427;DP=1000;DS;Dels=0.00;FS=4.288;HaplotypeScore=97.5392;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;MQRankSum=1.650;QD=13.19;ReadPosRankSum=-1.410;SB=-9.272e+03 GT:AD:DP:GQ:PL 1/1:1,968:999:99:13186,1462,0 chrXII 460411 . C T 503.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.824;DP=1000;DS;Dels=0.00;FS=0.237;HaplotypeScore=959.9431;MLEAC=1;MLEAF=0.500;MQ=36.60;MQ0=0;MQRankSum=7.764;QD=0.50;ReadPosRankSum=-20.635;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:565,435:1000:99:533,0,2069 chrXII 460594 . C T 15550.01 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=6.8864;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=329;QD=15.55;SB=-5.006e+03 GT:AD:DP:GQ:PL 1/1:0,1000:1000:99:15550,1717,0 chrXII 460659 . C T 10756.01 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=18.3225;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=107;QD=10.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,999:1000:99:10756,1306,0 chrXII 460780 . T C 9919.01 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=4.5004;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=471;QD=9.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:19,981:1000:99:9919,1072,0 chrXII 475970 . T A 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=1;QD=1.62;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,7:8:6:44,6,0 chrXII 490443 . A G 589 filter AC=2;AF=1.00;AN=2;BaseQRankSum=9.812;DP=146;DS;Dels=0.00;FS=389.461;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.29;MQ0=2;MQRankSum=9.812;QD=4.03;ReadPosRankSum=8.897;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:96,49:146:66:622,66,0 chrXII 490487 . T C 1847 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=2;QD=17.93;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1880,207,0 chrXII 490579 . T G 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=-1.155;QD=21.68;ReadPosRankSum=1.700;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,108:113:99:2483,270,0 chrXII 490608 . G A 2527 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=22.77;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2560,267,0 chrXII 491328 . A C 3593.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.95;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3593,396,0 chrXII 491427 . T A 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=3.979;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=-1.065;QD=22.90;ReadPosRankSum=1.706;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3124,324,0 chrXII 493774 . T C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=160;Dels=0.00;FS=3.716;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.498;QD=20.09;ReadPosRankSum=1.710;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3248,351,0 chrXII 495002 . C G 3172 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6043;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3205,354,0 chrXII 498294 . T C 2680 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.10;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2713,300,0 chrXII 498457 . T C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=142;Dels=0.00;FS=12.737;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.339;QD=22.16;ReadPosRankSum=3.348;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:4,138:142:99:3180,360,0 chrXII 500416 . C G 3321.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=17.1868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3321,369,0 chrXII 501103 . G T 3788.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.7333;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.55;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3788,399,0 chrXII 502298 . A C 3835.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.6781;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.10;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,160:166:99:3835,420,0 chrXII 502411 . A G 3098 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3131,342,0 chrXII 502833 . G C 3788.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3788,417,0 chrXII 503635 . C T 8100.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=14.3741;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.55;SB=-4.066e+03 GT:AD:DP:GQ:PL 1/1:0,316:317:99:8100,832,0 chrXII 503710 . A G 5147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=16.0637;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.569;QD=22.09;ReadPosRankSum=1.658;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:5147,564,0 chrXII 503785 . T C 7368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.113;DP=335;Dels=0.00;FS=13.851;HaplotypeScore=22.5380;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.162;QD=21.99;ReadPosRankSum=4.126;SB=-3.570e+03 GT:AD:DP:GQ:PL 1/1:6,323:335:99:7368,825,0 chrXII 503857 . G A 6906.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=22.4183;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.02;SB=-3.100e+03 GT:AD:DP:GQ:PL 1/1:0,299:300:99:6906,762,0 chrXII 504004 . T C 6798.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=18.4095;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.51;SB=-3.082e+03 GT:AD:DP:GQ:PL 1/1:0,301:302:99:6798,739,0 chrXII 504191 . T G 4947.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.4345;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.78;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4947,540,0 chrXII 504223 . A G 3875.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.9819;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.06;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3875,417,0 chrXII 504375 . G A 5502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=212;Dels=0.00;FS=3.031;HaplotypeScore=11.4052;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.434;QD=25.95;ReadPosRankSum=0.207;SB=-2.897e+03 GT:AD:DP:GQ:PL 1/1:1,208:212:99:5502,574,0 chrXII 504665 . A G 4930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.196;QD=23.15;ReadPosRankSum=1.650;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:4930,543,0 chrXII 505154 . G A 5224.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.4503;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.30;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5224,550,0 chrXII 505346 . T C 4308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.161;QD=23.67;ReadPosRankSum=1.694;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4308,474,0 chrXII 505562 . G A 4650.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.4532;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.35;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4650,487,0 chrXII 505937 . T A 1404 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.96;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1437,150,0 chrXII 507985 . G A 2831 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.78;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2864,297,0 chrXII 507991 . T A 2724 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.64;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2757,285,0 chrXII 508294 . G A 2083 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.80;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2116,219,0 chrXII 509612 . C A 5592.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.30;SB=-3.041e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5592,621,0 chrXII 509760 . G A 5591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=238;Dels=0.00;FS=3.066;HaplotypeScore=12.9379;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.337;QD=23.49;ReadPosRankSum=0.022;SB=-3.043e+03 GT:AD:DP:GQ:PL 1/1:1,237:238:99:5591,603,0 chrXII 510044 . G C 2473 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.9947;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.88;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2506,276,0 chrXII 511059 . G A 4252.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.3538;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.36;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,178:182:99:4252,445,0 chrXII 511071 . A C 4376.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=22.21;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4376,477,0 chrXII 511340 . G A 4284.01 SnpCluster AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.2567;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=23.93;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4284,450,0 chrXII 511349 . G A 3887.01 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=23.14;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3887,400,0 chrXII 511350 . C T 3657.01 SnpCluster AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=21.39;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3657,393,0 chrXII 512877 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.86;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2967,304,0 chrXII 512951 . T C 1795 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1828,198,0 chrXII 513101 . G A 492 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=17.57;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:57:525,57,0 chrXII 513783 . G C 18782.01 filter AC=2;AF=1.00;AN=2;DP=879;Dels=0.00;FS=0.000;HaplotypeScore=60.7182;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.37;SB=-5.540e+03 GT:AD:DP:GQ:PL 1/1:0,872:879:99:18782,2039,0 chrXII 514237 . A T 10196.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=536;Dels=0.00;FS=6.144;HaplotypeScore=5.2889;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=0.973;QD=19.02;ReadPosRankSum=2.371;SB=-7.422e+03 GT:AD:DP:GQ:PL 1/1:2,534:536:99:10196,1087,0 chrXII 514238 . A T 10241.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=541;Dels=0.00;FS=9.177;HaplotypeScore=3.7115;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=-1.813;QD=18.93;ReadPosRankSum=2.917;SB=-7.474e+03 GT:AD:DP:GQ:PL 1/1:3,538:541:99:10241,1087,0 chrXII 514581 . G C 9109.01 filter AC=2;AF=1.00;AN=2;DP=492;Dels=0.00;FS=0.000;HaplotypeScore=35.9591;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.51;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,486:492:99:9109,1020,0 chrXII 514731 . C A 11662.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=518;Dels=0.00;FS=0.000;HaplotypeScore=15.5927;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=22.51;SB=-6.663e+03 GT:AD:DP:GQ:PL 1/1:0,518:518:99:11662,1196,0 chrXII 514739 . T A 10254.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.383;DP=461;Dels=0.00;FS=12.520;HaplotypeScore=9.9179;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=-0.511;QD=22.24;ReadPosRankSum=3.357;SB=-6.266e+03 GT:AD:DP:GQ:PL 1/1:4,457:461:99:10254,1069,0 chrXII 514740 . C G 9968.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=456;Dels=0.00;FS=3.078;HaplotypeScore=10.7066;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=0.864;QD=21.86;ReadPosRankSum=0.651;SB=-6.047e+03 GT:AD:DP:GQ:PL 1/1:1,454:456:99:9968,1069,0 chrXII 515236 . C T 1402.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.452;DP=240;Dels=0.00;FS=186.577;HaplotypeScore=16.4529;MLEAC=1;MLEAF=0.500;MQ=52.43;MQ0=0;MQRankSum=-9.816;QD=5.84;ReadPosRankSum=-6.975;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,97:240:99:1432,0,2472 chrXII 515239 . G T 1268.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.758;DP=239;Dels=0.00;FS=176.607;HaplotypeScore=14.0321;MLEAC=1;MLEAF=0.500;MQ=52.40;MQ0=0;MQRankSum=-10.273;QD=5.31;ReadPosRankSum=-8.553;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:143,94:239:99:1298,0,2577 chrXII 516197 . G A 6961.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=16.7619;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.82;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,301:305:99:6961,730,0 chrXII 516236 . G T 6084.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.45;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,270:271:99:6084,663,0 chrXII 517089 . C A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.2623;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.46;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3417,366,0 chrXII 517114 . A G 3557.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.17;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3557,387,0 chrXII 517338 . A G 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-1.566;QD=20.11;ReadPosRankSum=1.708;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3009,327,0 chrXII 517343 . C T 2750 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=3.6795;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.50;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2783,291,0 chrXII 517781 . T C 1964 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=8.1877;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.67;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1997,216,0 chrXII 519256 . T C 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.374;QD=24.73;ReadPosRankSum=1.702;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2902,321,0 chrXII 520061 . C A 2205 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=12.2728;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.71;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2238,231,0 chrXII 520774 . T C 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=151;Dels=0.00;FS=6.920;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.370;QD=22.36;ReadPosRankSum=2.383;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3377,378,0 chrXII 520933 . T C 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.0948;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.660;QD=22.10;ReadPosRankSum=-1.087;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3238,336,0 chrXII 521782 . G A 6365.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=18.1137;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.39;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:0,259:261:99:6365,673,0 chrXII 521966 . T C 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=170;Dels=0.00;FS=7.274;HaplotypeScore=10.5071;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.031;QD=22.64;ReadPosRankSum=2.420;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:3849,429,0 chrXII 522397 . A G 3398.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.6021;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.93;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3398,372,0 chrXII 522608 . A G 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.241;DP=179;Dels=0.00;FS=1.939;HaplotypeScore=19.4151;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.494;QD=23.18;ReadPosRankSum=3.013;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:4,172:179:99:4149,429,0 chrXII 526442 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3051,330,0 chrXII 526505 . C T 3504.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8087;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.52;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3504,381,0 chrXII 526550 . T A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.00;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3800,397,0 chrXII 526817 . C T 3091 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=22.24;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3124,322,0 chrXII 526820 . C T 3089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=3.442;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.445;QD=20.87;ReadPosRankSum=1.568;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3122,321,0 chrXII 527111 . T C 4774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.9127;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.732;QD=24.74;ReadPosRankSum=0.681;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4774,508,0 chrXII 528120 . T A 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.509;QD=23.74;ReadPosRankSum=1.703;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2906,312,0 chrXII 528706 . G C 3996.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.58;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3996,432,0 chrXII 528722 . C T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.1269;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.30;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:3770,399,0 chrXII 528749 . T A 3982.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.5600;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=19.52;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3982,432,0 chrXII 529055 . G A 4839.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.56;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4839,499,0 chrXII 529568 . T C 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=1.054;QD=19.98;ReadPosRankSum=1.684;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2890,309,0 chrXII 529574 . G A 2841 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.74;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2874,309,0 chrXII 529586 . A G 2637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=137;Dels=0.00;FS=9.931;HaplotypeScore=6.3775;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-0.519;QD=19.25;ReadPosRankSum=2.948;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:3,133:137:99:2670,294,0 chrXII 529715 . C T 4851.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.56;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4851,516,0 chrXII 530159 . G A 4367.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.23;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4367,477,0 chrXII 530261 . C T 5874.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.6021;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=25.65;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5874,625,0 chrXII 530306 . T C 4521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=185;Dels=0.00;FS=4.174;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=0.218;QD=24.44;ReadPosRankSum=1.694;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,182:185:99:4521,501,0 chrXII 530377 . G A 5172.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.5583;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=24.63;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5172,547,0 chrXII 530391 . G A 5058.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=23.75;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5058,529,0 chrXII 530433 . T C 4753.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.9603;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.11;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,212:215:99:4753,519,0 chrXII 530501 . A G 2784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.361;DP=128;Dels=0.00;FS=8.667;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=1.760;QD=21.75;ReadPosRankSum=3.389;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:4,123:128:99:2817,309,0 chrXII 530530 . A C 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=119;Dels=0.00;FS=2.757;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.052;QD=22.25;ReadPosRankSum=2.408;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2681,297,0 chrXII 530536 . T C 2609 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=23.09;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2642,282,0 chrXII 530638 . T C 1919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=92;Dels=0.00;FS=5.180;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-1.654;QD=20.86;ReadPosRankSum=1.654;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:1,89:92:99:1952,216,0 chrXII 530778 . A C 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=5.788;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=0.209;QD=19.57;ReadPosRankSum=1.694;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1833,201,0 chrXII 530780 . T A 1885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-0.901;QD=20.49;ReadPosRankSum=2.924;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:3,89:92:99:1918,198,0 chrXII 530858 . T G 1967 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.35;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2000,213,0 chrXII 530873 . C G 2079 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=8.5987;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=22.12;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2112,225,0 chrXII 530878 . A G 1920 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=8.3211;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.43;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1953,207,0 chrXII 531361 . A G 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.2816;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.305;QD=20.33;ReadPosRankSum=1.715;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4065,456,0 chrXII 531376 . T C 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=3.968;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-0.565;QD=20.87;ReadPosRankSum=1.695;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3902,426,0 chrXII 531679 . G A 3122 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5319;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.20;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3155,330,0 chrXII 532084 . C T 3471.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.45;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3471,375,0 chrXII 532285 . T C 3424.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.98;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3424,375,0 chrXII 533081 . A G 3003 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.92;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3036,333,0 chrXII 534544 . G A 3531.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3531,381,0 chrXII 534602 . A G 2848 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2881,315,0 chrXII 534832 . G A 2608 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.08;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2641,288,0 chrXII 535013 . C T 2886 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2919,306,0 chrXII 535065 . A T 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=127;Dels=0.00;FS=3.012;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.513;QD=23.48;ReadPosRankSum=2.372;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:3015,312,0 chrXII 535113 . T C 2604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=13.7863;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=0.000;QD=21.70;ReadPosRankSum=1.703;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2637,294,0 chrXII 535290 . G A 3149 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=24.99;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3182,330,0 chrXII 535340 . T C 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0401;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.255;QD=25.41;ReadPosRankSum=1.707;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3481,378,0 chrXII 535533 . G A 4517.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.9824;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.82;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4517,463,0 chrXII 535537 . T C 4212.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.9366;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=20.55;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4212,448,0 chrXII 535603 . C T 4797.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.73;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4797,499,0 chrXII 535696 . A G 5419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=234;Dels=0.00;FS=3.028;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.037;QD=23.16;ReadPosRankSum=2.397;SB=-2.989e+03 GT:AD:DP:GQ:PL 1/1:2,232:234:99:5419,606,0 chrXII 535711 . C A 5548.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=7.4613;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=22.46;SB=-3.261e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5548,577,0 chrXII 535744 . G A 5631.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.0628;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.96;SB=-3.203e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5631,595,0 chrXII 535963 . G A 5423.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.7632;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.18;SB=-3.167e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5423,562,0 chrXII 536245 . T A 4330.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.2201;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4330,462,0 chrXII 536332 . C T 2377 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2410,258,0 chrXII 536548 . T C 3584.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.6937;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.89;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3584,393,0 chrXII 536776 . C T 4732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.818;DP=202;Dels=0.00;FS=3.600;HaplotypeScore=15.0837;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.695;QD=23.43;ReadPosRankSum=1.205;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:1,198:202:99:4732,477,0 chrXII 536833 . A G 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.211;DP=163;Dels=0.00;FS=5.135;HaplotypeScore=10.5662;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-1.883;QD=20.61;ReadPosRankSum=3.254;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:4,158:163:99:3360,375,0 chrXII 536867 . C T 2528 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=21.24;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2561,267,0 chrXII 536876 . T A 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=115;Dels=0.02;FS=4.510;HaplotypeScore=97.3744;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;MQRankSum=0.169;QD=21.31;ReadPosRankSum=1.701;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2484,258,0 chrXII 537122 . A G 1973 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=20.77;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2006,225,0 chrXII 537160 . A T 1902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.01;FS=5.068;HaplotypeScore=5.1561;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;MQRankSum=0.588;QD=17.61;ReadPosRankSum=1.634;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1935,207,0 chrXII 537219 . G A 1358 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.70;MQ0=0;QD=11.32;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1391,153,0 chrXII 537226 . C T 1363 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.73;MQ0=0;QD=10.25;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1396,147,0 chrXII 537234 . A C 1372 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=6.410;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.97;MQ0=0;MQRankSum=0.223;QD=9.80;ReadPosRankSum=1.707;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,139:140:99:1405,156,0 chrXII 537237 . T C 1555 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.32;MQ0=0;MQRankSum=-1.569;QD=10.44;ReadPosRankSum=1.709;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,148:149:99:1588,171,0 chrXII 537242 . A C 1575 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=6.406;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;MQRankSum=-0.419;QD=10.23;ReadPosRankSum=1.709;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,152:154:99:1608,177,0 chrXII 537949 . C T 2961 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1760;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.09;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2994,315,0 chrXII 538121 . A G 2469 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2502,276,0 chrXII 538167 . G A 2584 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2617,270,0 chrXII 538303 . G C 3223.06 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:3256,357,0 chrXII 538336 . G A 3551.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=14.2703;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.36;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3551,370,0 chrXII 538387 . A G 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.522;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.600;QD=23.86;ReadPosRankSum=1.596;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3675,393,0 chrXII 538477 . A C 3284.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.15;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3284,360,0 chrXII 538882 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.0737;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.28;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2974,321,0 chrXII 539059 . C T 4576.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4576,481,0 chrXII 539704 . C T 2382 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=25.07;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2415,249,0 chrXII 539764 . C T 1920 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.94;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1953,198,0 chrXII 539905 . G A 2059 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=24.22;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2092,216,0 chrXII 539923 . T C 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=100;Dels=0.00;FS=2.673;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.997;QD=22.01;ReadPosRankSum=2.351;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2234,243,0 chrXII 539979 . G A 2167 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.25;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2200,243,0 chrXII 540097 . G A 2834 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.42;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2867,297,0 chrXII 540147 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=150;Dels=0.00;FS=3.038;HaplotypeScore=9.5772;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.272;QD=22.21;ReadPosRankSum=2.384;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3332,372,0 chrXII 540219 . A T 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=4.150;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.279;QD=24.04;ReadPosRankSum=1.708;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3462,375,0 chrXII 540258 . A G 3716.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.2747;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3716,402,0 chrXII 540729 . G A 3709.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=25.23;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3709,402,0 chrXII 540753 . A G 4228.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.9247;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=24.16;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4228,459,0 chrXII 541018 . G C 7036.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=7.6607;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=22.48;SB=-3.769e+03 GT:AD:DP:GQ:PL 1/1:0,310:313:99:7036,771,0 chrXII 541031 . T C 7577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.498;DP=338;Dels=0.00;FS=17.450;HaplotypeScore=14.9236;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-0.712;QD=22.42;ReadPosRankSum=4.487;SB=-4.199e+03 GT:AD:DP:GQ:PL 1/1:7,330:338:99:7577,811,0 chrXII 541062 . T C 9000.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.190;DP=408;Dels=0.00;FS=18.036;HaplotypeScore=36.5972;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.843;QD=22.06;ReadPosRankSum=5.402;SB=-4.230e+03 GT:AD:DP:GQ:PL 1/1:10,398:408:99:9000,993,0 chrXII 541268 . G C 5636.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=16.6004;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=16.67;SB=-2.969e+03 GT:AD:DP:GQ:PL 1/1:0,336:338:99:5636,642,0 chrXII 541285 . A T 7116.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.389;DP=405;Dels=0.00;FS=2.346;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.680;QD=17.57;ReadPosRankSum=3.398;SB=-3.050e+03 GT:AD:DP:GQ:PL 1/1:4,401:405:99:7116,757,0 chrXII 541310 . A G 6930.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=425;Dels=0.00;FS=0.000;HaplotypeScore=8.7340;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=1.640;QD=16.31;ReadPosRankSum=2.438;SB=-2.938e+03 GT:AD:DP:GQ:PL 1/1:2,423:425:99:6930,774,0 chrXII 541508 . A G 4429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-0.350;QD=21.93;ReadPosRankSum=2.376;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:2,198:202:99:4429,486,0 chrXII 541624 . T C 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=116;Dels=0.00;FS=7.016;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.283;QD=22.53;ReadPosRankSum=2.386;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2647,288,0 chrXII 541643 . T G 2279 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.34;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2312,255,0 chrXII 541663 . G A 2334 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.23;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2367,255,0 chrXII 541726 . C G 2644 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.99;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2677,282,0 chrXII 541773 . C T 2449 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.30;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2482,258,0 chrXII 541850 . G A 2614 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.6568;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.53;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2647,276,0 chrXII 542794 . A G 4095.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4095,441,0 chrXII 543100 . A G 1282 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=12.9087;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=15.63;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1315,141,0 chrXII 543240 . T C 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.082;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.738;QD=22.06;ReadPosRankSum=1.704;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2769,300,0 chrXII 543480 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=23.28;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3153,336,0 chrXII 543689 . C T 1788 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1821,195,0 chrXII 543884 . G C 1906 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1939,213,0 chrXII 544246 . G A 5429.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.0762;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.02;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5429,571,0 chrXII 544316 . A G 5279.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.1649;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.55;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5279,582,0 chrXII 544840 . C A 6140.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=7.0938;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.98;SB=-3.401e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:6140,640,0 chrXII 545338 . T A 4244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.591;QD=24.39;ReadPosRankSum=1.712;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4244,453,0 chrXII 545567 . A C 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=161;Dels=0.00;FS=3.178;HaplotypeScore=18.0204;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.943;QD=24.17;ReadPosRankSum=1.688;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,157:161:99:3891,417,0 chrXII 545673 . G A 3678.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.36;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3678,390,0 chrXII 546249 . A C 3797.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.48;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3797,414,0 chrXII 546382 . A G 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=162;Dels=0.00;FS=3.468;HaplotypeScore=16.9373;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.472;QD=23.34;ReadPosRankSum=1.710;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3781,417,0 chrXII 546637 . T C 4453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=189;Dels=0.01;FS=3.013;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.506;QD=23.56;ReadPosRankSum=2.318;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:4453,483,0 chrXII 547572 . A G 1619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.562;QD=21.03;ReadPosRankSum=1.642;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1652,177,0 chrXII 547847 . C T 2559 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.85;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2592,270,0 chrXII 548327 . A G 2577 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.81;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2610,285,0 chrXII 548346 . G C 2348 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=19.73;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,114:119:99:2381,258,0 chrXII 548452 . A G 2500 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2533,276,0 chrXII 548551 . G A 2688 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.78;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2721,282,0 chrXII 548742 . A G 2330 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.62;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2363,255,0 chrXII 549170 . C T 4720.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.7063;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4720,501,0 chrXII 549297 . A G 2734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=123;Dels=0.00;FS=2.596;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-0.182;QD=22.23;ReadPosRankSum=2.728;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:3,119:123:99:2767,300,0 chrXII 549369 . G C 2911 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.4963;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=18.66;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2944,327,0 chrXII 549562 . A G 2364 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=18.47;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2397,258,0 chrXII 549589 . A G 3109 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=24.87;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3142,342,0 chrXII 549694 . A G 4377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=186;Dels=0.00;FS=3.008;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;MQRankSum=1.694;QD=23.53;ReadPosRankSum=2.409;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:2,180:186:99:4377,486,0 chrXII 549760 . G A 4428.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=24.20;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4428,480,0 chrXII 549883 . C T 3013 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.8710;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.52;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3046,342,0 chrXII 550279 . A C 2175 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2208,240,0 chrXII 550665 . T C 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=169;Dels=0.00;FS=5.995;HaplotypeScore=7.4806;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.887;QD=23.47;ReadPosRankSum=2.959;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:3,166:169:99:3967,438,0 chrXII 550771 . C T 4112.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4112,433,0 chrXII 550837 . G A 4294.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.34;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4294,451,0 chrXII 551145 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.8742;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.13;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2809,294,0 chrXII 551448 . A G 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-1.487;QD=21.65;ReadPosRankSum=1.678;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2782,303,0 chrXII 551454 . T C 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=128;Dels=0.00;FS=9.668;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-0.056;QD=20.40;ReadPosRankSum=2.945;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:2644,294,0 chrXII 551847 . C T 4683.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.4536;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.26;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4683,484,0 chrXII 552056 . A G 3379.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.7219;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.86;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3379,378,0 chrXII 552323 . T G 5442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=246;Dels=0.00;FS=2.919;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.378;QD=22.12;ReadPosRankSum=2.429;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:2,243:246:99:5442,618,0 chrXII 552618 . A G 3717.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.9642;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.13;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3717,423,0 chrXII 552649 . C G 3495.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.1882;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.71;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,157:161:99:3495,390,0 chrXII 552789 . C T 3627.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.97;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3627,381,0 chrXII 552832 . C T 4199.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.7269;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=25.60;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4199,442,0 chrXII 553063 . A G 4760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.747;DP=213;Dels=0.00;FS=17.820;HaplotypeScore=15.1857;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.679;QD=22.35;ReadPosRankSum=3.807;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:5,207:213:99:4760,510,0 chrXII 553728 . G A 5112.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=6.6841;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.66;SB=-2.988e+03 GT:AD:DP:GQ:PL 1/1:0,256:260:99:5112,555,0 chrXII 553789 . A G 7141.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=11.1904;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.72;SB=-3.064e+03 GT:AD:DP:GQ:PL 1/1:0,299:301:99:7141,786,0 chrXII 554039 . C T 8039.01 PASS AC=2;AF=1.00;AN=2;DP=344;Dels=0.00;FS=0.000;HaplotypeScore=21.3611;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.37;SB=-4.276e+03 GT:AD:DP:GQ:PL 1/1:0,340:344:99:8039,862,0 chrXII 554262 . G T 4964.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=16.4128;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.96;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4964,520,0 chrXII 554679 . A G 4994.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.25;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4994,558,0 chrXII 554694 . C G 5083.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.66;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:0,243:246:99:5083,561,0 chrXII 554937 . A G 5514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=241;Dels=0.00;FS=5.469;HaplotypeScore=19.0583;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.685;QD=22.88;ReadPosRankSum=2.945;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:3,236:241:99:5514,597,0 chrXII 554971 . T C 5956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.681;DP=260;Dels=0.00;FS=15.563;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.739;QD=22.91;ReadPosRankSum=3.795;SB=-3.282e+03 GT:AD:DP:GQ:PL 1/1:5,255:260:99:5956,651,0 chrXII 555034 . A G 5347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=242;Dels=0.00;FS=6.994;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=1.604;QD=22.10;ReadPosRankSum=2.388;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:2,240:242:99:5347,577,0 chrXII 555043 . G T 5078.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=3.8603;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.70;SB=-2.954e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5078,538,0 chrXII 555075 . G A 4266.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.22;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4266,448,0 chrXII 555570 . A G 141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.440;DP=260;Dels=0.00;FS=4.861;HaplotypeScore=404.3456;MLEAC=1;MLEAF=0.500;MQ=53.45;MQ0=0;MQRankSum=-0.355;QD=0.54;ReadPosRankSum=-7.786;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:229,30:260:99:171,0,465 chrXII 555573 . A G 742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=244;Dels=0.00;FS=2.940;HaplotypeScore=27.0910;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.552;QD=3.04;ReadPosRankSum=2.408;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:2,236:243:87:775,87,0 chrXII 555702 . A G 6772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=292;Dels=0.00;FS=11.281;HaplotypeScore=12.8551;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.052;QD=23.19;ReadPosRankSum=2.928;SB=-3.016e+03 GT:AD:DP:GQ:PL 1/1:3,288:292:99:6772,741,0 chrXII 555957 . G A 5340.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=12.6555;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=24.16;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5340,556,0 chrXII 555993 . A G 4822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=217;Dels=0.00;FS=2.725;HaplotypeScore=16.4300;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-0.972;QD=22.22;ReadPosRankSum=2.427;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:2,214:217:99:4822,528,0 chrXII 556056 . C T 5852.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=23.0456;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.28;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5852,619,0 chrXII 556347 . G A 2908 filter AC=2;AF=1.00;AN=2;DP=186;Dels=0.01;FS=0.000;HaplotypeScore=21.5180;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=15.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:2941,312,0 chrXII 556835 . G A 3944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.001;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.355;QD=24.20;ReadPosRankSum=-0.463;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3944,415,0 chrXII 556879 . G A 3642.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.4017;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.78;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3642,384,0 chrXII 557324 . A G 4232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.081;QD=23.25;ReadPosRankSum=1.656;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4232,459,0 chrXII 557420 . A G 4984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=216;Dels=0.00;FS=3.507;HaplotypeScore=15.7712;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.309;QD=23.07;ReadPosRankSum=-1.147;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4984,546,0 chrXII 557979 . C T 3782.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.35;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3782,394,0 chrXII 558134 . C T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.4973;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=19.88;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3518,369,0 chrXII 558143 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.3093;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.49;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3249,336,0 chrXII 558665 . C T 4154.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=16.7683;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.70;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4154,433,0 chrXII 558890 . T C 4614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.418;DP=207;Dels=0.00;FS=9.149;HaplotypeScore=16.2063;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-1.046;QD=22.29;ReadPosRankSum=3.409;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:4,202:206:99:4614,501,0 chrXII 558900 . A G 4388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.378;DP=214;Dels=0.00;FS=9.141;HaplotypeScore=19.7666;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=0.252;QD=20.50;ReadPosRankSum=3.419;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:4,207:214:99:4388,486,0 chrXII 558945 . C T 4587.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.94;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4587,478,0 chrXII 559511 . C T 4615.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.67;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4615,495,0 chrXII 559835 . T C 6004.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=13.1411;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.14;SB=-3.153e+03 GT:AD:DP:GQ:PL 1/1:0,283:284:99:6004,663,0 chrXII 559850 . T G 5302.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=7.7650;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=20.01;SB=-3.393e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:5302,591,0 chrXII 559898 . G A 4196.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.43;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4196,450,0 chrXII 560075 . T G 3774.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.29;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3774,411,0 chrXII 560519 . G A 1843 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1876,195,0 chrXII 561120 . G A 5367.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-3.035e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5367,559,0 chrXII 562305 . C G 4961.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=21.9390;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.29;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,209:213:99:4961,532,0 chrXII 563754 . C T 1300 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.41;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1333,138,0 chrXII 563770 . G A 1488 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.08;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1521,165,0 chrXII 564068 . T C 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.320;DP=116;Dels=0.00;FS=5.284;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.717;QD=23.53;ReadPosRankSum=3.381;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:4,111:116:99:2763,303,0 chrXII 564107 . A T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.4263;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.95;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3477,358,0 chrXII 564356 . C T 3409.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.07;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3409,355,0 chrXII 565153 . A G 6037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=251;Dels=0.00;FS=4.789;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.568;QD=24.05;ReadPosRankSum=1.718;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:1,247:251:99:6037,652,0 chrXII 565274 . G T 6050.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=15.3051;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-3.509e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:6050,637,0 chrXII 565346 . A G 7460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.353;DP=307;Dels=0.00;FS=8.929;HaplotypeScore=21.3251;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.304;QD=24.30;ReadPosRankSum=3.359;SB=-3.779e+03 GT:AD:DP:GQ:PL 1/1:4,303:307:99:7460,805,0 chrXII 565625 . A G 4021.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.4292;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.283;QD=20.52;ReadPosRankSum=1.714;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4021,432,0 chrXII 566015 . T C 2717 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=17.42;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2750,312,0 chrXII 566021 . G A 2617 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.9387;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=16.67;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:2650,285,0 chrXII 566164 . G A 3558.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.41;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3558,373,0 chrXII 566307 . A G 4228.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.0750;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=23.75;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4228,459,0 chrXII 566432 . C T 2148 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.05;FS=0.000;HaplotypeScore=135.4126;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=3;QD=13.86;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2181,272,0 chrXII 566515 . G A 4042.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=3;QD=25.75;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4042,429,0 chrXII 566615 . T C 3091 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=23.78;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3124,336,0 chrXII 566809 . C T 3172 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.21;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3205,333,0 chrXII 567365 . C T 4286.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=19.8735;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.92;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4286,445,0 chrXII 567416 . A G 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=3.398;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.457;QD=20.02;ReadPosRankSum=1.669;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3323,357,0 chrXII 567955 . C G 2128 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.03;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2161,234,0 chrXII 567957 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.43;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2171,228,0 chrXII 568114 . A T 2944 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.33;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2977,321,0 chrXII 568449 . A T 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.530;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.367;QD=21.25;ReadPosRankSum=1.680;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2880,309,0 chrXII 568546 . G A 3687.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.10;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3687,393,0 chrXII 568917 . T C 3664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.215;QD=23.95;ReadPosRankSum=1.619;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3664,411,0 chrXII 569539 . C T 3082 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.66;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3115,327,0 chrXII 570426 . T C 1831 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=17.95;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,98:102:99:1864,204,0 chrXII 570428 . A C 1920 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=18.82;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1953,216,0 chrXII 570676 . T C 2495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=4.273;HaplotypeScore=4.5503;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.923;QD=23.32;ReadPosRankSum=1.700;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2528,273,0 chrXII 570786 . T C 3494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7518;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.509;QD=24.78;ReadPosRankSum=1.707;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3494,378,0 chrXII 570914 . G A 4028.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=26.50;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:4028,418,0 chrXII 571412 . C T 5341.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=19.8385;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.50;SB=-2.948e+03 GT:AD:DP:GQ:PL 1/1:0,213:218:99:5341,556,0 chrXII 571665 . G C 2821 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.04;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2854,312,0 chrXII 572062 . T C 3504.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.84;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3504,381,0 chrXII 572164 . T C 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.6266;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.731;QD=24.31;ReadPosRankSum=2.418;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3743,402,0 chrXII 572294 . G A 2829 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.00;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2862,312,0 chrXII 572400 . G A 3192 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.0101;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.86;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3225,336,0 chrXII 572946 . T C 3967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=3.992;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.071;QD=22.80;ReadPosRankSum=1.672;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3967,423,0 chrXII 573273 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=25.47;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3115,318,0 chrXII 573498 . T A 5741.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=6.9535;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=25.74;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5741,595,0 chrXII 573606 . C A 5437.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.16;SB=-2.705e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:5437,565,0 chrXII 573646 . G A 5797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=278;Dels=0.00;FS=4.312;HaplotypeScore=14.3277;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.000;QD=20.85;ReadPosRankSum=-0.386;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:1,277:278:99:5797,591,0 chrXII 573671 . A G 4623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=7.4488;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.688;QD=19.18;ReadPosRankSum=1.718;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:1,238:241:99:4623,519,0 chrXII 573804 . T C 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=167;Dels=0.00;FS=4.087;HaplotypeScore=17.4541;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.359;QD=18.89;ReadPosRankSum=1.711;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,163:167:99:3188,339,0 chrXII 573942 . A G 3814.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.8353;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.77;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3814,405,0 chrXII 574288 . A T 3697.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.5423;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.55;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3697,387,0 chrXII 574499 . G A 4407.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.19;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4407,469,0 chrXII 574584 . C G 4633.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.9974;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4633,498,0 chrXII 574876 . G T 4526.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.6405;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.07;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4526,475,0 chrXII 574945 . C T 4240.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.0208;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=22.43;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4240,442,0 chrXII 574950 . T C 4364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=194;Dels=0.00;FS=3.171;HaplotypeScore=8.3708;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-1.247;QD=22.49;ReadPosRankSum=1.678;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4364,468,0 chrXII 575257 . C A 4402.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.2377;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=25.01;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4402,465,0 chrXII 575458 . T C 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=162;Dels=0.00;FS=3.013;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.776;QD=22.85;ReadPosRankSum=2.342;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:3702,402,0 chrXII 575473 . T G 3673.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.67;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3673,414,0 chrXII 575627 . C G 3619.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.3983;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.16;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3619,408,0 chrXII 575740 . C T 4629.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=17.4432;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.36;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4629,495,0 chrXII 576016 . G A 7909.01 PASS AC=2;AF=1.00;AN=2;DP=355;Dels=0.00;FS=0.000;HaplotypeScore=11.0668;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.28;SB=-4.476e+03 GT:AD:DP:GQ:PL 1/1:0,351:355:99:7909,832,0 chrXII 576036 . G C 8008.01 filter AC=2;AF=1.00;AN=2;DP=367;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.82;SB=-4.688e+03 GT:AD:DP:GQ:PL 1/1:0,366:367:99:8008,891,0 chrXII 576111 . A C 5767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.382;DP=288;Dels=0.00;FS=5.219;HaplotypeScore=9.0742;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=-1.298;QD=20.02;ReadPosRankSum=3.308;SB=-2.976e+03 GT:AD:DP:GQ:PL 1/1:4,281:288:99:5767,613,0 chrXII 576112 . T C 5694.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=5.9195;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=19.91;SB=-2.918e+03 GT:AD:DP:GQ:PL 1/1:0,285:286:99:5694,610,0 chrXII 576211 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.4681;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=16.95;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:3576,402,0 chrXII 576339 . A T 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;MQRankSum=-1.145;QD=17.15;ReadPosRankSum=1.704;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2160,225,0 chrXII 576341 . T C 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=5.206;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;MQRankSum=-1.045;QD=16.57;ReadPosRankSum=1.650;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2121,231,0 chrXII 576880 . G A 3839.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.1471;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.59;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3839,394,0 chrXII 577073 . G A 5555.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.9480;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.14;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5555,589,0 chrXII 577535 . C T 4363.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.1902;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=24.11;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4363,471,0 chrXII 577601 . T C 4555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=224;Dels=0.00;FS=4.088;HaplotypeScore=6.5934;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-1.111;QD=20.33;ReadPosRankSum=1.685;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:4555,510,0 chrXII 577607 . C G 4593.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.69;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:4593,498,0 chrXII 578431 . C T 3339.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.9651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3339,351,0 chrXII 578796 . C T 4907.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.2162;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.52;SB=-2.916e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4907,511,0 chrXII 578913 . G A 3415.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.39;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3415,355,0 chrXII 579044 . C T 3333.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=36.0619;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.50;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,148:153:99:3333,351,0 chrXII 579316 . G A 4629.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=25.02;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,181:185:99:4629,501,0 chrXII 579749 . T G 3677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.5875;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.643;QD=22.70;ReadPosRankSum=1.689;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:1,158:162:99:3677,383,0 chrXII 580383 . A G 4778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.912;QD=22.86;ReadPosRankSum=1.665;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4778,516,0 chrXII 580719 . A T 3712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=162;Dels=0.00;FS=3.004;HaplotypeScore=13.6490;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.599;QD=22.91;ReadPosRankSum=2.403;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3712,388,0 chrXII 581223 . C T 3572.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.47;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3572,378,0 chrXII 581232 . C A 3491.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.55;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3491,381,0 chrXII 581598 . A G 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=126;Dels=0.00;FS=6.196;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.200;QD=22.12;ReadPosRankSum=2.391;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2820,315,0 chrXII 581793 . T C 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=154;Dels=0.00;FS=5.928;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.484;QD=21.82;ReadPosRankSum=2.928;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3360,363,0 chrXII 581795 . C A 3532.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=22.64;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3532,369,0 chrXII 582033 . C T 2586 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=23.51;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2619,276,0 chrXII 582374 . C T 5309.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.9268;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.47;SB=-2.976e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5309,547,0 chrXII 582520 . A G 4663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=217;Dels=0.00;FS=8.023;HaplotypeScore=23.5241;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.659;QD=21.49;ReadPosRankSum=3.395;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:4,211:217:99:4663,510,0 chrXII 583188 . C A 4770.01 SnpCluster AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=6.7528;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.65;SB=-3.083e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4770,493,0 chrXII 583193 . A C 4315.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=227;Dels=0.00;FS=6.357;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-0.159;QD=19.01;ReadPosRankSum=2.373;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:2,222:227:99:4315,480,0 chrXII 583195 . A C 4196.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=228;Dels=0.00;FS=9.382;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-0.854;QD=18.40;ReadPosRankSum=2.836;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:3,224:228:99:4196,471,0 chrXII 583229 . C T 4948.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.88;SB=-2.781e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4948,523,0 chrXII 583697 . T C 4894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.1911;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.372;QD=22.25;ReadPosRankSum=1.700;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:4894,534,0 chrXII 583763 . T G 4421.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.3808;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=21.78;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4421,489,0 chrXII 584165 . G A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8904;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.19;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3749,391,0 chrXII 584201 . A G 3792.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.5146;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.00;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3792,405,0 chrXII 584675 . G A 3883.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.97;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3883,403,0 chrXII 584735 . C A 3774.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.73;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3774,393,0 chrXII 585083 . T A 3724.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=17.40;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:3724,399,0 chrXII 585608 . T G 2089 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;QD=22.46;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2122,231,0 chrXII 585709 . A T 2448 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=10.8899;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=24.73;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2481,255,0 chrXII 585892 . G C 2224 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.17;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2257,246,0 chrXII 585942 . A T 592.27 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;DP=117;Dels=0.01;FS=3.894;HaplotypeScore=33.2335;MLEAC=1;MLEAF=0.500;MQ=53.09;MQ0=0;MQRankSum=1.590;QD=5.06;ReadPosRankSum=3.586;SB=-6.613e+02 GT:AD:DP:GQ:PL 0/1:25,91:116:9:622,0,9 chrXII 586054 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=3.995;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.456;QD=24.31;ReadPosRankSum=1.657;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3355,366,0 chrXII 586124 . G A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.5308;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.80;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3373,354,0 chrXII 586163 . T C 5229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.422;DP=230;Dels=0.01;FS=18.704;HaplotypeScore=19.6309;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=0.822;QD=22.73;ReadPosRankSum=3.391;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:4,222:227:99:5229,565,0 chrXII 586255 . T C 3162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=10.4389;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.742;QD=19.40;ReadPosRankSum=1.689;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3195,348,0 chrXII 586284 . C T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.23;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3609,381,0 chrXII 586855 . C T 3926.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=18.4406;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.51;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3926,420,0 chrXII 587065 . A G 5077.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.95;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5077,550,0 chrXII 587297 . G A 5153.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.8656;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5153,535,0 chrXII 587519 . T C 3090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=152;Dels=0.00;FS=9.484;HaplotypeScore=13.1973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.025;QD=20.33;ReadPosRankSum=2.400;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:2,147:152:99:3123,339,0 chrXII 587824 . C T 2996 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3029,327,0 chrXII 588163 . C T 3866.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.5586;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.10;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3866,406,0 chrXII 588291 . C T 3075 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.21;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3108,321,0 chrXII 588394 . T C 2448 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1542;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.75;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2481,270,0 chrXII 588421 . C T 2520 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.83;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2553,267,0 chrXII 588604 . A G 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=3.358;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.844;QD=21.74;ReadPosRankSum=1.673;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2577,285,0 chrXII 589024 . A G 2348 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.80;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2381,258,0 chrXII 589093 . C A 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=1.251;QD=20.45;ReadPosRankSum=1.636;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1526,159,0 chrXII 589169 . C A 1851 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=21.52;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1884,204,0 chrXII 589177 . C A 2024 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=22.74;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2057,213,0 chrXII 589317 . C T 3373.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=25.17;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3373,354,0 chrXII 589339 . T C 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=143;Dels=0.00;FS=2.513;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-1.622;QD=22.12;ReadPosRankSum=2.936;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:3,138:143:99:3196,342,0 chrXII 589563 . A G 3275.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.7590;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.27;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3275,360,0 chrXII 590028 . T C 2066 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2099,225,0 chrXII 590160 . T C 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=104;Dels=0.00;FS=2.973;HaplotypeScore=10.2433;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.130;QD=23.69;ReadPosRankSum=2.402;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2497,273,0 chrXII 590505 . T G 3156 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3189,354,0 chrXII 591423 . A G 2293 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=22.26;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2326,252,0 chrXII 591438 . A G 2011 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.3345;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.72;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2044,222,0 chrXII 591465 . A T 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.036;DP=102;Dels=0.00;FS=2.918;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.326;QD=21.58;ReadPosRankSum=1.967;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2234,231,0 chrXII 591568 . G T 3027 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.4390;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.47;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3060,318,0 chrXII 591955 . G T 2233 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=25.37;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2266,234,0 chrXII 592135 . T C 2420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.592;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.312;QD=22.41;ReadPosRankSum=0.755;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:2,104:108:99:2453,251,0 chrXII 592198 . T G 2478 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=19.36;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2511,273,0 chrXII 592199 . T A 2624 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.66;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2657,273,0 chrXII 592353 . G A 2933 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.0372;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.74;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2966,315,0 chrXII 592468 . C A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=25.75;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3450,360,0 chrXII 592578 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9170;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=22.55;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2964,312,0 chrXII 592686 . C T 1904 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.23;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1937,201,0 chrXII 592872 . A G 3719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=147;Dels=0.00;FS=10.690;HaplotypeScore=9.2376;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.076;QD=25.30;ReadPosRankSum=2.315;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3719,405,0 chrXII 592964 . A C 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.318;DP=163;Dels=0.00;FS=12.540;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;MQRankSum=-1.635;QD=22.53;ReadPosRankSum=3.361;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:4,157:163:99:3672,393,0 chrXII 597189 . A G 82.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=145;Dels=0.00;FS=10.881;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=12.27;MQ0=47;MQRankSum=1.202;QD=0.57;ReadPosRankSum=1.555;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,144:145:15:115,15,0 chrXII 597191 . C T 83.26 filter AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.98;MQ0=48;QD=0.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,134:135:15:116,15,0 chrXII 597202 . A T 81.26 filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.13;MQ0=54;QD=0.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,101:101:15:114,15,0 chrXII 597328 . C T 40.97 filter AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.07;MQ0=96;QD=0.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,171:171:9:73,9,0 chrXII 597360 . A G 88.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=10.73;MQ0=91;MQRankSum=-1.378;QD=0.49;ReadPosRankSum=1.693;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,177:179:15:121,15,0 chrXII 597384 . A T 40.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.33;MQ0=69;MQRankSum=-0.541;QD=0.31;ReadPosRankSum=3.314;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:4,129:133:9:73,9,0 chrXII 597419 . G A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=9.38;MQ0=37;QD=0.32;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,59:59:6:50,6,0 chrXII 599059 . C G 13.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=34.54;MQ0=0;MQRankSum=0.736;QD=4.42;ReadPosRankSum=-0.736;SB=-1.303e+00 GT:AD:DP:GQ:PL 0/1:1,2:3:16:43,0,16 chrXII 599061 . C T 42.14 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.54;MQ0=0;MQRankSum=0.731;QD=8.43;ReadPosRankSum=-0.731;SB=-2.636e+00 GT:AD:DP:GQ:PL 0/1:1,4:5:12:72,0,12 chrXII 599062 . A G 37.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DP=5;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.54;MQ0=0;MQRankSum=0.731;QD=7.40;ReadPosRankSum=-0.731;SB=-2.518e+00 GT:AD:DP:GQ:PL 0/1:1,4:5:21:67,0,21 chrXII 599111 . T G 1408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.815;DP=86;Dels=0.00;FS=2.030;HaplotypeScore=6.9141;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;MQRankSum=-1.302;QD=16.37;ReadPosRankSum=3.312;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:4,82:86:99:1441,156,0 chrXII 599206 . A C 2862 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=24.25;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2895,315,0 chrXII 599232 . T A 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;MQRankSum=-0.858;QD=24.73;ReadPosRankSum=1.701;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2803,294,0 chrXII 599406 . G A 1881 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=11.2973;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=19.59;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1914,198,0 chrXII 599482 . G T 3055 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=117.7109;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.63;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3088,318,0 chrXII 599905 . G A 3532.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.64;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3532,367,0 chrXII 600169 . C T 3700.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.02;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3700,387,0 chrXII 600445 . T G 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=6.749;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.039;QD=22.38;ReadPosRankSum=2.418;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3514,384,0 chrXII 600547 . C T 2954 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.56;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2987,312,0 chrXII 600676 . A G 4005.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.7640;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.88;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4005,435,0 chrXII 601080 . C T 4684.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.46;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4684,481,0 chrXII 601489 . A G 4557.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.9855;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.02;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4557,489,0 chrXII 601774 . C T 4938.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4938,537,0 chrXII 601888 . A G 7257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=321;Dels=0.00;FS=3.767;HaplotypeScore=31.1728;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.961;QD=22.61;ReadPosRankSum=1.721;SB=-3.386e+03 GT:AD:DP:GQ:PL 1/1:1,319:321:99:7257,796,0 chrXII 601934 . C T 7373.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=16.7630;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=25.25;SB=-2.904e+03 GT:AD:DP:GQ:PL 1/1:0,291:292:99:7373,763,0 chrXII 602107 . T C 6109.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.63;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,267:270:99:6109,661,0 chrXII 602186 . A G 2788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.321;DP=160;Dels=0.02;FS=10.144;HaplotypeScore=126.6362;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.237;QD=17.42;ReadPosRankSum=4.451;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:7,149:157:99:2821,309,0 chrXII 602338 . G A 3966.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.33;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3966,415,0 chrXII 603057 . A T 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=165;Dels=0.00;FS=2.574;HaplotypeScore=8.2458;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=-0.603;QD=18.16;ReadPosRankSum=2.360;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3029,321,0 chrXII 603075 . G T 2858 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=19.18;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2891,297,0 chrXII 603077 . G A 2554 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=17.49;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2587,276,0 chrXII 603141 . G A 2640 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1329;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=21.12;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2673,276,0 chrXII 603161 . T C 2521 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=20.33;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2554,282,0 chrXII 603180 . C T 2940 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.94;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2973,309,0 chrXII 603216 . A T 2445 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.37;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2478,261,0 chrXII 603313 . C G 2655 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=21.41;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2688,297,0 chrXII 603319 . A G 2481 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=19.54;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2514,282,0 chrXII 603325 . C T 2674 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=20.73;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2707,285,0 chrXII 603566 . A G 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.108;QD=23.83;ReadPosRankSum=1.705;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3083,333,0 chrXII 603584 . T A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3449;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=25.79;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3404,354,0 chrXII 603778 . G C 3049 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=28.8678;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;QD=22.09;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,132:136:99:3082,345,0 chrXII 603907 . C A 4566.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.95;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4566,475,0 chrXII 604223 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=14.3540;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.52;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3098,327,0 chrXII 604269 . G A 5501.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.45;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:5501,574,0 chrXII 604825 . A G 5205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=231;Dels=0.00;FS=2.574;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.162;QD=22.53;ReadPosRankSum=2.908;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:3,227:231:99:5205,567,0 chrXII 604868 . A G 4774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=2.044;QD=22.95;ReadPosRankSum=2.426;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:2,205:208:99:4774,513,0 chrXII 604940 . A T 3464.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.2867;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.92;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3464,355,0 chrXII 604997 . G A 4447.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.02;FS=0.000;HaplotypeScore=25.2292;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=25.41;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4447,463,0 chrXII 605168 . G T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=21.66;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3260,339,0 chrXII 605240 . T C 3276.01 SnpCluster AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=19.98;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3276,363,0 chrXII 605243 . C T 3365.01 SnpCluster AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;QD=21.43;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3365,354,0 chrXII 605250 . A T 3165 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;MQRankSum=1.577;QD=20.16;ReadPosRankSum=1.665;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3198,339,0 chrXII 605537 . C A 2882 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.5697;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.51;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2915,306,0 chrXII 605830 . A G 2807 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.10;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2840,306,0 chrXII 605962 . G A 4254.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.8063;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=25.17;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4254,445,0 chrXII 606025 . C T 4153.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.3756;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.15;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4153,433,0 chrXII 606088 . C T 4523.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.31;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4523,483,0 chrXII 606112 . A G 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=176;Dels=0.00;FS=3.292;HaplotypeScore=6.7642;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.762;QD=21.52;ReadPosRankSum=1.712;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3788,414,0 chrXII 606220 . T C 2536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=145;Dels=0.00;FS=3.577;HaplotypeScore=14.7323;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-0.511;QD=17.49;ReadPosRankSum=1.707;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,140:145:99:2569,294,0 chrXII 606238 . T C 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=162;Dels=0.00;FS=3.951;HaplotypeScore=10.6336;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-0.270;QD=17.86;ReadPosRankSum=1.710;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,153:162:99:2927,315,0 chrXII 606799 . T C 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.5639;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.460;QD=24.75;ReadPosRankSum=1.664;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3812,414,0 chrXII 606826 . C T 3677.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.88;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3677,393,0 chrXII 606879 . C T 3496.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.70;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3496,361,0 chrXII 606928 . A G 3595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.257;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.011;QD=22.06;ReadPosRankSum=1.647;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3595,390,0 chrXII 607075 . C A 3051 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.8617;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.43;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3084,336,0 chrXII 607128 . G A 3422.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.12;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3422,352,0 chrXII 607134 . T C 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=4.138;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-1.392;QD=22.10;ReadPosRankSum=1.709;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3382,363,0 chrXII 607452 . G A 4221.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=23.45;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4221,445,0 chrXII 607457 . T C 4001.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=23.13;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4001,435,0 chrXII 607531 . C T 2897 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.62;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2930,309,0 chrXII 607680 . A G 2576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=0.823;QD=21.11;ReadPosRankSum=1.619;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2609,288,0 chrXII 607722 . C T 1804 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.7288;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;QD=18.60;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1837,192,0 chrXII 607737 . A G 1665 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=17.34;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1698,189,0 chrXII 607779 . T C 1446 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;QD=14.76;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1479,162,0 chrXII 607790 . T C 1317 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=13.86;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1350,150,0 chrXII 607791 . T G 1316 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=14.15;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1349,150,0 chrXII 607814 . A G 1796 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=16.79;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1829,201,0 chrXII 607912 . G T 2245 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=22.01;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2278,243,0 chrXII 607921 . A G 1801 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=19.16;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1834,210,0 chrXII 607922 . C T 1699 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=17.88;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1732,201,0 chrXII 607923 . T C 1660 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;MQRankSum=0.018;QD=17.11;ReadPosRankSum=1.625;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1693,201,0 chrXII 607998 . T G 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=113;Dels=0.00;FS=2.972;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=-0.925;QD=21.52;ReadPosRankSum=2.406;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2465,273,0 chrXII 608022 . A G 2612 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=22.71;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2645,288,0 chrXII 608102 . G A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.7838;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=23.43;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3303,339,0 chrXII 608136 . G A 2970 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.85;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3003,315,0 chrXII 608472 . C T 3505.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=25.58;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3505,378,0 chrXII 608666 . C T 2829 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;QD=20.80;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2862,315,0 chrXII 608673 . C T 2790 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;QD=18.60;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2823,312,0 chrXII 608685 . T C 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=149;Dels=0.01;FS=7.126;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;MQRankSum=-1.513;QD=18.13;ReadPosRankSum=2.416;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2734,297,0 chrXII 608709 . A G 2584 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.76;MQ0=0;QD=17.23;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2617,282,0 chrXII 608724 . C T 2484 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=16.24;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2517,276,0 chrXII 608748 . G A 2145 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=17.16;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2178,228,0 chrXII 608772 . G A 2187 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=19.35;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2220,240,0 chrXII 608885 . T C 3391.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=22.76;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3391,372,0 chrXII 608906 . G A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=24.67;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3651,381,0 chrXII 609039 . T C 2295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=103;Dels=0.00;FS=10.956;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-1.030;QD=22.28;ReadPosRankSum=2.736;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:3,100:103:99:2328,255,0 chrXII 609078 . A T 3030 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=22.78;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3063,318,0 chrXII 609087 . G A 3140 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=22.43;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3173,330,0 chrXII 609126 . C T 2972 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.54;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3005,309,0 chrXII 609150 . A G 2167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=116;Dels=0.00;FS=3.049;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=-0.414;QD=18.68;ReadPosRankSum=1.701;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,112:116:99:2200,237,0 chrXII 609194 . T G 2628 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.69;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2661,300,0 chrXII 609213 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.3515;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.41;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3265,357,0 chrXII 609380 . G A 5039.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=24.82;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:5039,532,0 chrXII 609555 . A G 4746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.1660;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-0.622;QD=22.60;ReadPosRankSum=1.715;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4746,513,0 chrXII 609559 . A G 4539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=210;Dels=0.00;FS=6.064;HaplotypeScore=6.9578;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-1.179;QD=21.61;ReadPosRankSum=2.937;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:3,205:210:99:4539,504,0 chrXII 609572 . A G 4549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=206;Dels=0.00;FS=2.982;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.256;QD=22.08;ReadPosRankSum=2.378;SB=-2.587e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4549,484,0 chrXII 609824 . G A 5546.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=19.6309;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=24.11;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5546,580,0 chrXII 609899 . T C 5812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.372;DP=239;Dels=0.00;FS=5.233;HaplotypeScore=24.1775;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.592;QD=24.32;ReadPosRankSum=3.394;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:4,233:239:99:5812,627,0 chrXII 610109 . G A 7816.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=24.4124;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.79;SB=-4.302e+03 GT:AD:DP:GQ:PL 1/1:0,341:343:99:7816,826,0 chrXII 610430 . A G 5225.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=11.2082;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.77;SB=-2.849e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5225,591,0 chrXII 610544 . C T 4228.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=21.14;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4228,445,0 chrXII 610547 . A G 4068.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=20.65;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4068,438,0 chrXII 610619 . G A 4456.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.95;SB=-2.784e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4456,463,0 chrXII 610640 . G A 4172.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.2971;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=19.50;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4172,465,0 chrXII 610829 . C T 6303.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=20.8171;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=24.53;SB=-3.043e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:6303,658,0 chrXII 610920 . T C 5494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.214;QD=21.29;ReadPosRankSum=2.364;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:2,256:258:99:5494,600,0 chrXII 610934 . T C 5119.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=250;Dels=0.00;FS=2.660;HaplotypeScore=8.3416;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=0.673;QD=20.48;ReadPosRankSum=2.391;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:2,248:250:99:5119,567,0 chrXII 611018 . T C 5290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.790;DP=281;Dels=0.00;FS=11.744;HaplotypeScore=13.3867;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-0.014;QD=18.83;ReadPosRankSum=3.684;SB=-3.239e+03 GT:AD:DP:GQ:PL 1/1:5,276:281:99:5290,576,0 chrXII 611030 . C G 5635.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=3.5434;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=19.50;SB=-3.703e+03 GT:AD:DP:GQ:PL 1/1:0,286:288:99:5635,607,0 chrXII 611045 . A G 5610.01 PASS AC=2;AF=1.00;AN=2;DP=306;Dels=0.00;FS=0.000;HaplotypeScore=11.9330;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=18.33;SB=-4.080e+03 GT:AD:DP:GQ:PL 1/1:0,306:306:99:5610,612,0 chrXII 611078 . G A 5789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=17.0438;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.635;QD=17.81;ReadPosRankSum=1.495;SB=-3.614e+03 GT:AD:DP:GQ:PL 1/1:1,324:325:99:5789,630,0 chrXII 611179 . T C 5567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.366;DP=275;Dels=0.00;FS=15.127;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-1.282;QD=20.24;ReadPosRankSum=3.353;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:4,271:275:99:5567,624,0 chrXII 611203 . T C 5527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=270;Dels=0.00;FS=10.205;HaplotypeScore=10.1824;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.498;QD=20.47;ReadPosRankSum=2.936;SB=-3.097e+03 GT:AD:DP:GQ:PL 1/1:3,265:270:99:5527,603,0 chrXII 611769 . C T 4818.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.2818;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.31;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4818,505,0 chrXII 611779 . A G 4334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.611;DP=218;Dels=0.00;FS=9.070;HaplotypeScore=6.6026;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=1.890;QD=19.88;ReadPosRankSum=2.404;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:2,213:218:99:4334,480,0 chrXII 611812 . T A 4569.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.06;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4569,484,0 chrXII 611957 . G A 4528.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=17.8979;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=20.58;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4528,478,0 chrXII 611994 . A G 4023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.3658;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=-1.542;QD=20.12;ReadPosRankSum=1.715;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4023,444,0 chrXII 612034 . G A 3950.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.7999;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=21.01;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3950,417,0 chrXII 612178 . T C 1331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=33.95;MQ0=0;MQRankSum=0.000;QD=17.06;ReadPosRankSum=0.222;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1364,150,0 chrXII 612183 . A G 1175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;MQRankSum=-1.178;QD=15.26;ReadPosRankSum=1.686;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1208,135,0 chrXII 612202 . A G 1478 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.7499;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;QD=18.47;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1511,168,0 chrXII 612230 . G A 1470 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;QD=21.30;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1503,162,0 chrXII 612238 . C T 1445 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;QD=21.25;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1478,156,0 chrXII 612358 . T C 1486 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=0;QD=18.35;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1519,168,0 chrXII 612380 . G A 704.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.813;DP=82;Dels=0.00;FS=13.635;HaplotypeScore=1.4725;MLEAC=1;MLEAF=0.500;MQ=35.28;MQ0=0;MQRankSum=2.405;QD=8.59;ReadPosRankSum=-4.420;SB=-2.890e+02 GT:AD:DP:GQ:PL 0/1:43,39:82:33:734,0,33 chrXII 612386 . T C 84.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.291;DP=80;Dels=0.00;FS=9.788;HaplotypeScore=3.2601;MLEAC=1;MLEAF=0.500;MQ=33.32;MQ0=0;MQRankSum=-0.144;QD=1.05;ReadPosRankSum=5.531;SB=-2.900e+02 GT:AD:DP:GQ:PL 0/1:30,50:80:99:114,0,497 chrXII 612392 . G A 217.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.906;DP=84;Dels=0.00;FS=3.404;HaplotypeScore=3.2601;MLEAC=1;MLEAF=0.500;MQ=33.62;MQ0=0;MQRankSum=-0.322;QD=2.58;ReadPosRankSum=7.065;SB=-4.380e+02 GT:AD:DP:GQ:PL 0/1:24,60:84:99:247,0,340 chrXII 612404 . T A 865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=3.485;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;MQRankSum=-1.533;QD=9.83;ReadPosRankSum=1.692;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:96:898,96,0 chrXII 612475 . T G 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=2.824;HaplotypeScore=5.9634;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;MQRankSum=0.817;QD=19.52;ReadPosRankSum=2.417;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3019,327,0 chrXII 612477 . G T 3161 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.5974;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=20.80;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3194,336,0 chrXII 612516 . T C 2217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;MQRankSum=-0.153;QD=14.98;ReadPosRankSum=1.709;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,146:148:99:2250,249,0 chrXII 612537 . A C 1469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=8.145;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.13;MQ0=0;MQRankSum=-1.125;QD=10.72;ReadPosRankSum=1.707;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:1,136:137:99:1502,168,0 chrXII 612562 . T G 1412 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.05;MQ0=0;QD=10.23;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,137:138:99:1445,159,0 chrXII 612564 . T C 1469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.48;MQ0=0;MQRankSum=-2.418;QD=10.49;ReadPosRankSum=2.950;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:3,137:140:99:1502,165,0 chrXII 612575 . T C 1571 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;QD=10.76;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1604,183,0 chrXII 612606 . A G 2181 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.07;MQ0=0;QD=13.55;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2214,255,0 chrXII 612628 . A T 2645 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=14.86;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:2678,276,0 chrXII 612630 . C T 2785 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=0;QD=14.89;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:2818,303,0 chrXII 612708 . T C 5273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.277;DP=260;Dels=0.00;FS=8.635;HaplotypeScore=19.7677;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=-0.391;QD=20.28;ReadPosRankSum=3.420;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:4,252:260:99:5273,588,0 chrXII 612784 . G T 5740.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=13.0297;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=23.24;SB=-3.103e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5740,595,0 chrXII 613011 . C T 4615.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=21.3628;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.40;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4615,481,0 chrXII 613059 . T C 4347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.191;DP=191;Dels=0.00;FS=2.861;HaplotypeScore=15.9543;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.247;QD=22.76;ReadPosRankSum=2.424;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4347,468,0 chrXII 613218 . A G 5311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.724;DP=245;Dels=0.00;FS=9.193;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.840;QD=21.68;ReadPosRankSum=2.947;SB=-2.989e+03 GT:AD:DP:GQ:PL 1/1:3,241:245:99:5311,585,0 chrXII 613380 . A C 5612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=244;Dels=0.00;FS=7.738;HaplotypeScore=12.7434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.864;QD=23.00;ReadPosRankSum=2.369;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:2,241:244:99:5612,607,0 chrXII 613464 . T C 4728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=226;Dels=0.00;FS=3.764;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-1.042;QD=20.92;ReadPosRankSum=1.701;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4728,522,0 chrXII 613479 . G A 4517.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=20.44;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4517,480,0 chrXII 613482 . T C 4292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.421;DP=219;Dels=0.00;FS=14.854;HaplotypeScore=1.9722;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=-1.191;QD=19.60;ReadPosRankSum=3.373;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:4,215:219:99:4292,477,0 chrXII 613846 . G A 3597.01 SnpCluster AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.32;MQ0=0;QD=17.55;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3597,373,0 chrXII 613848 . C G 3465.01 SnpCluster AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.32;MQ0=0;QD=16.90;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:3465,372,0 chrXII 613851 . T C 3386.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=207;Dels=0.00;FS=3.475;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.47;MQ0=0;MQRankSum=0.226;QD=16.36;ReadPosRankSum=1.682;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:3386,363,0 chrXII 613857 . A G 3023 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=204;Dels=0.00;FS=5.905;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=31.24;MQ0=0;MQRankSum=0.177;QD=14.82;ReadPosRankSum=2.946;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:3,201:204:99:3056,336,0 chrXII 613864 . C A 2905 SnpCluster AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.17;MQ0=0;QD=15.29;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:2938,306,0 chrXII 613866 . C T 2903 SnpCluster AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.17;MQ0=0;QD=15.28;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:2936,303,0 chrXII 613867 . C T 2895 SnpCluster AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.39;MQ0=0;QD=15.16;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:2928,303,0 chrXII 613890 . C T 3334.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;QD=17.46;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3334,369,0 chrXII 614136 . C T 2876 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=23.38;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2909,303,0 chrXII 614178 . G C 1816 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.18;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1849,201,0 chrXII 614286 . C A 1873 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.84;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1906,204,0 chrXII 614304 . A G 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=79;Dels=0.00;FS=10.444;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.141;QD=21.57;ReadPosRankSum=2.886;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:3,76:79:99:1737,189,0 chrXII 614411 . A T 2081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=84;Dels=0.00;FS=9.338;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;MQRankSum=-0.015;QD=24.77;ReadPosRankSum=2.391;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:2114,222,0 chrXII 614456 . G A 2378 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.42;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2411,249,0 chrXII 614708 . G A 3423.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=15.2620;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.93;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3423,355,0 chrXII 614751 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=139;Dels=0.00;FS=2.983;HaplotypeScore=11.3849;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.223;QD=23.97;ReadPosRankSum=2.414;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:3332,357,0 chrXII 614883 . G A 4638.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.3285;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.91;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4638,484,0 chrXII 616056 . C T 4354.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.4664;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.19;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4354,459,0 chrXII 616188 . C A 4466.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.14;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4466,463,0 chrXII 616473 . A T 4657.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.5955;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.64;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4657,499,0 chrXII 616681 . T C 4207.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.5597;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.50;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4207,459,0 chrXII 618199 . A T 2550 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.17;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2583,270,0 chrXII 619515 . G A 3707.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.02;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3707,399,0 chrXII 621288 . G C 2690 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.02;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2723,303,0 chrXII 621672 . G T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.6570;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.46;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3589,372,0 chrXII 621879 . C T 2744 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.8218;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.25;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2777,294,0 chrXII 622344 . C T 4242.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4242,442,0 chrXII 622969 . A G 1976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=85;Dels=0.00;FS=4.619;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.031;QD=23.25;ReadPosRankSum=1.650;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:2009,216,0 chrXII 622999 . A G 2210 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.55;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2243,249,0 chrXII 623494 . G A 3684.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=25.58;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3684,379,0 chrXII 623566 . A G 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.485;HaplotypeScore=11.4878;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.848;QD=25.94;ReadPosRankSum=1.708;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3762,405,0 chrXII 623632 . C T 4805.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.97;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,182:185:99:4805,508,0 chrXII 623752 . C T 4671.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.14;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4671,498,0 chrXII 623758 . A G 4380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=216;Dels=0.00;FS=9.543;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-0.463;QD=20.28;ReadPosRankSum=2.370;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4380,489,0 chrXII 624547 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.85;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3454,360,0 chrXII 626086 . G A 3770.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.6811;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.42;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3770,411,0 chrXII 626422 . T A 1016 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=15.63;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1049,114,0 chrXII 627007 . T C 4475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.417;DP=204;Dels=0.00;FS=9.109;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-0.340;QD=21.94;ReadPosRankSum=3.400;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:4,199:204:99:4475,483,0 chrXII 627018 . G A 4678.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.71;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4678,493,0 chrXII 627361 . C T 4074.01 SnpCluster AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=20.58;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4074,435,0 chrXII 627363 . T C 3857.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=198;Dels=0.00;FS=8.859;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=0.683;QD=19.48;ReadPosRankSum=2.387;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:2,194:198:99:3857,438,0 chrXII 627370 . G A 4498.01 SnpCluster AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=20.92;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4498,477,0 chrXII 627375 . T C 4421.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=20.47;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4421,472,0 chrXII 627543 . T C 3771.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.85;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3771,408,0 chrXII 628296 . C G 3278.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.65;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3278,354,0 chrXII 628629 . T C 1794 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1827,198,0 chrXII 629448 . C T 2848 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.8322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2881,306,0 chrXII 630314 . A G 2883 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2916,312,0 chrXII 630794 . T A 4862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=197;Dels=0.00;FS=6.697;HaplotypeScore=9.2664;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.133;QD=24.68;ReadPosRankSum=2.374;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4862,505,0 chrXII 631274 . C T 3850.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3850,391,0 chrXII 631417 . A G 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.434;QD=24.62;ReadPosRankSum=1.640;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3717,396,0 chrXII 631521 . A G 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=163;Dels=0.00;FS=6.378;HaplotypeScore=15.1182;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.538;QD=23.38;ReadPosRankSum=2.419;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3811,414,0 chrXII 631738 . T C 4161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.934;DP=189;Dels=0.00;FS=3.033;HaplotypeScore=13.6557;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.699;QD=22.02;ReadPosRankSum=2.071;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4161,438,0 chrXII 631801 . G A 4476.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.5289;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.15;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4476,460,0 chrXII 632381 . A C 3971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=22.69;ReadPosRankSum=1.692;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3971,435,0 chrXII 632607 . T C 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.188;QD=22.38;ReadPosRankSum=1.675;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2741,300,0 chrXII 632722 . C T 2126 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.15;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2159,234,0 chrXII 633127 . A G 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=14.2027;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.223;QD=21.02;ReadPosRankSum=1.707;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,139:143:99:3039,330,0 chrXII 633163 . G A 3369.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.16;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3369,349,0 chrXII 633316 . G A 4368.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.54;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4368,460,0 chrXII 633355 . T C 4287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.958;QD=23.69;ReadPosRankSum=1.713;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:4287,468,0 chrXII 633590 . C T 3382.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.55;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3382,351,0 chrXII 634219 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.58;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3249,331,0 chrXII 634288 . C T 2863 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.8545;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2896,300,0 chrXII 634506 . A C 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=165;Dels=0.00;FS=6.658;HaplotypeScore=9.0102;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.309;QD=23.52;ReadPosRankSum=2.419;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3881,417,0 chrXII 634713 . C T 3150 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.42;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3183,328,0 chrXII 635100 . C T 3904.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.52;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3904,411,0 chrXII 635382 . C T 2798 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.03;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:2831,306,0 chrXII 635391 . T C 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=158;Dels=0.00;FS=3.035;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-1.625;QD=19.08;ReadPosRankSum=2.403;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3047,327,0 chrXII 636286 . A C 2337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=100;Dels=0.00;FS=3.533;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.161;QD=23.37;ReadPosRankSum=1.696;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,96:100:99:2370,258,0 chrXII 637862 . C A 5175.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.00;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5175,570,0 chrXII 640135 . C T 1670 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.19;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1703,177,0 chrXII 640272 . C T 2709 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.19;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2742,294,0 chrXII 641122 . A T 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=113;Dels=0.00;FS=6.880;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-1.110;QD=21.52;ReadPosRankSum=2.384;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2465,261,0 chrXII 641145 . A G 2490 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=23.27;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2523,267,0 chrXII 641368 . A G 2921 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=15.1235;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.72;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2954,321,0 chrXII 641406 . A G 4043.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.6608;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=23.24;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4043,438,0 chrXII 641415 . C T 4070.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.0093;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=23.66;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4070,426,0 chrXII 641496 . G A 2664 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=20.98;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2697,294,0 chrXII 641499 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=20.58;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2852,300,0 chrXII 641544 . T C 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.5590;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=0.449;QD=21.24;ReadPosRankSum=1.659;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4036,447,0 chrXII 641592 . A G 4294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=3.323;HaplotypeScore=7.4372;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.250;QD=22.72;ReadPosRankSum=1.677;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4294,471,0 chrXII 641607 . T C 4048.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=23.13;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4048,435,0 chrXII 641676 . C T 3934.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.6620;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=21.62;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3934,420,0 chrXII 641691 . C T 3806.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=19.52;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3806,402,0 chrXII 641709 . C T 3815.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=18.89;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:3815,411,0 chrXII 642018 . A G 4188.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.35;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4188,453,0 chrXII 642188 . T A 3710.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.90;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3710,388,0 chrXII 642274 . C T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.4140;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.92;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3622,378,0 chrXII 642815 . A G 4640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=200;Dels=0.00;FS=12.072;HaplotypeScore=17.2708;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.183;QD=23.20;ReadPosRankSum=2.924;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:3,195:200:99:4640,528,0 chrXII 643052 . G A 5885.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.2581;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5885,610,0 chrXII 643142 . T C 4686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=221;Dels=0.00;FS=3.851;HaplotypeScore=15.2016;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.257;QD=21.20;ReadPosRankSum=1.668;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:1,216:221:99:4686,519,0 chrXII 644045 . A G 4912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=230;Dels=0.00;FS=2.817;HaplotypeScore=19.0569;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.785;QD=21.36;ReadPosRankSum=2.364;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:4912,543,0 chrXII 644373 . A G 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.915;QD=20.62;ReadPosRankSum=1.676;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2590,285,0 chrXII 644539 . G A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.2482;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.41;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3361,363,0 chrXII 644833 . A G 3860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=179;Dels=0.00;FS=2.986;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.103;QD=21.56;ReadPosRankSum=2.340;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3860,429,0 chrXII 645392 . C T 3492.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3492,364,0 chrXII 646511 . C T 5750.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.6604;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.90;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:5750,592,0 chrXII 646539 . C A 4588.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.7350;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.38;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4588,489,0 chrXII 646705 . A G 7008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=307;Dels=0.00;FS=2.692;HaplotypeScore=26.4438;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.455;QD=22.83;ReadPosRankSum=2.433;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:2,304:307:99:7008,777,0 chrXII 646831 . C T 6071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=249;Dels=0.00;FS=3.691;HaplotypeScore=15.3170;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.299;QD=24.38;ReadPosRankSum=1.481;SB=-2.915e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:6071,640,0 chrXII 646878 . G A 5981.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=14.1692;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.09;SB=-2.892e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:5981,622,0 chrXII 647017 . C T 5114.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=19.7058;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.04;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:5114,532,0 chrXII 647095 . A G 5317.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=13.7353;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=23.12;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5317,576,0 chrXII 647371 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=18.01;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3547,381,0 chrXII 647389 . A G 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=190;Dels=0.00;FS=3.788;HaplotypeScore=8.0155;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=1.072;QD=20.80;ReadPosRankSum=1.714;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:3952,444,0 chrXII 647496 . C G 5688.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=17.0001;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=21.88;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,257:260:99:5688,627,0 chrXII 647614 . T G 6556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.261;DP=280;Dels=0.00;FS=8.480;HaplotypeScore=31.9779;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.358;QD=23.41;ReadPosRankSum=3.355;SB=-3.042e+03 GT:AD:DP:GQ:PL 1/1:4,275:280:99:6556,715,0 chrXII 647752 . T C 5003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=235;Dels=0.00;FS=3.540;HaplotypeScore=11.8074;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.703;QD=21.29;ReadPosRankSum=1.703;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:5003,535,0 chrXII 647788 . T C 5231.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.35;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:5231,582,0 chrXII 647849 . C G 5034.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=19.8205;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.57;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:5034,538,0 chrXII 648649 . C T 5589.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:0,257:259:99:5589,601,0 chrXII 650248 . T C 4824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.6668;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.356;QD=22.75;ReadPosRankSum=1.716;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4824,528,0 chrXII 650638 . A G 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-1.297;QD=21.33;ReadPosRankSum=1.613;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3754,411,0 chrXII 656770 . A T 458 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=16.36;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:54:491,54,0 chrXII 656891 . G A 2742 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.03;FS=0.000;HaplotypeScore=18.6623;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=25.87;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2775,288,0 chrXII 657041 . G A 2336 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.68;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2369,249,0 chrXII 657045 . G A 2349 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.03;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2382,249,0 chrXII 657049 . G A 2423 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.86;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2456,252,0 chrXII 657212 . C T 2218 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2251,246,0 chrXII 657674 . T C 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=3.172;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.707;QD=24.30;ReadPosRankSum=1.682;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3329,357,0 chrXII 657708 . C T 3164 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.61;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3197,345,0 chrXII 657750 . T C 2926 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2959,318,0 chrXII 658104 . G A 4013.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.03;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4013,424,0 chrXII 658158 . G C 4106.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.5496;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.19;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4106,456,0 chrXII 658495 . G A 3758.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=15.4849;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.64;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3758,396,0 chrXII 658560 . C T 3519.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=22.27;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3519,367,0 chrXII 658577 . T C 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.451;QD=20.18;ReadPosRankSum=1.669;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3329,360,0 chrXII 658599 . G T 3506.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.62;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3506,369,0 chrXII 659916 . T C 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-0.298;QD=21.43;ReadPosRankSum=1.597;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2798,303,0 chrXII 659919 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.94;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2819,294,0 chrXII 660046 . T C 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.270;QD=24.18;ReadPosRankSum=2.384;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3651,396,0 chrXII 660339 . C T 4428.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.74;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4428,460,0 chrXII 660652 . G C 3217.04 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.65;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3250,354,0 chrXII 660742 . G T 3025 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.9341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3058,321,0 chrXII 661240 . G A 4468.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.6788;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.45;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4468,466,0 chrXII 661750 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.680;HaplotypeScore=116.3344;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.185;QD=24.00;ReadPosRankSum=0.195;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3249,342,0 chrXII 661927 . A G 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.397;QD=23.78;ReadPosRankSum=1.687;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3686,393,0 chrXII 661969 . G A 3736.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.80;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3736,388,0 chrXII 662548 . G A 4460.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.4396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4460,466,0 chrXII 663126 . A T 2608 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.29;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2641,279,0 chrXII 663332 . G A 5223.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.8262;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=25.60;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,200:204:99:5223,553,0 chrXII 663542 . G A 6934.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=19.2206;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.51;SB=-3.492e+03 GT:AD:DP:GQ:PL 1/1:0,307:308:99:6934,753,0 chrXII 663806 . A G 4558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=7.4899;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.513;QD=19.48;ReadPosRankSum=1.658;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,232:234:99:4558,510,0 chrXII 663890 . T C 3874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=199;Dels=0.00;FS=8.948;HaplotypeScore=18.9014;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.780;QD=19.47;ReadPosRankSum=2.425;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:3874,417,0 chrXII 665159 . G A 2797 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.50;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2830,291,0 chrXII 665774 . T C 5504.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.505;DP=228;Dels=0.00;FS=12.640;HaplotypeScore=25.3045;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=3.609;QD=24.14;ReadPosRankSum=4.798;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:8,218:228:99:5504,606,0 chrXII 666164 . G T 6501.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.72;SB=-3.160e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:6501,705,0 chrXII 666395 . T C 4441.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.62;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4441,486,0 chrXII 666495 . G A 3778.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.7040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3778,394,0 chrXII 666673 . C T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=25.33;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3647,379,0 chrXII 666971 . C T 4713.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4713,484,0 chrXII 668164 . T C 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.2494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.110;QD=23.89;ReadPosRankSum=1.614;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2852,309,0 chrXII 668335 . C T 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.112;QD=23.74;ReadPosRankSum=-1.134;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3323,343,0 chrXII 668462 . T C 3359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=3.231;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.364;QD=23.65;ReadPosRankSum=1.708;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3359,363,0 chrXII 668905 . T C 3979.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3979,426,0 chrXII 669178 . T A 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=141;Dels=0.00;FS=3.042;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.300;QD=23.94;ReadPosRankSum=2.344;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3375,366,0 chrXII 669495 . A G 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=134;Dels=0.00;FS=9.478;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-1.192;QD=23.85;ReadPosRankSum=2.413;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3229,366,0 chrXII 669673 . G A 2861 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.2534;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=21.84;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2894,303,0 chrXII 669680 . C T 2824 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=20.92;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2857,309,0 chrXII 669768 . T C 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=117;Dels=0.00;FS=13.883;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.507;QD=20.97;ReadPosRankSum=3.382;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:4,112:117:99:2486,270,0 chrXII 669860 . C G 319 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.767;DP=134;Dels=0.00;FS=23.486;HaplotypeScore=25.4363;MLEAC=2;MLEAF=1.00;MQ=31.39;MQ0=0;MQRankSum=-0.308;QD=2.38;ReadPosRankSum=-6.190;SB=3.00 GT:AD:DP:GQ:PL 1/1:114,18:134:39:352,39,0 chrXII 669881 . G A 1695 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=90.5986;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=10.73;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:1728,180,0 chrXII 669920 . G T 2088 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=14.11;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2121,219,0 chrXII 670460 . C G 2729 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.6713;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=23.13;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2762,297,0 chrXII 670933 . G A 1920 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1953,204,0 chrXII 671042 . C A 1823 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.70;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1856,201,0 chrXII 671112 . A G 1937 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.06;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1970,213,0 chrXII 671310 . A G 2608 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.68;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2641,288,0 chrXII 671563 . T C 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.872;QD=23.87;ReadPosRankSum=1.710;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3795,408,0 chrXII 671669 . G A 4774.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.3406;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.48;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4774,510,0 chrXII 671956 . A C 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.202;QD=21.88;ReadPosRankSum=1.690;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3566,405,0 chrXII 672163 . G T 3933.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.05;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3933,423,0 chrXII 672463 . C T 2155 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2188,234,0 chrXII 672637 . T C 2473 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.5725;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.33;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2506,273,0 chrXII 672683 . T G 2267 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.37;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2300,261,0 chrXII 672778 . C A 2171 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.12;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2204,240,0 chrXII 672895 . T C 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=105;Dels=0.00;FS=6.500;HaplotypeScore=95.3317;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-1.231;QD=19.48;ReadPosRankSum=2.330;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:2,101:105:99:2078,228,0 chrXII 672956 . A G 1482 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.3658;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=18.07;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1515,165,0 chrXII 673080 . T C 3285.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.33;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3285,357,0 chrXII 673526 . A G 2134 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=25.11;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2167,231,0 chrXII 673638 . C T 64.51 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=98.4060;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=0.58;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:12:97,12,0 chrXII 674079 . A C 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.166;DP=127;Dels=0.00;FS=3.005;HaplotypeScore=12.4463;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.615;QD=20.62;ReadPosRankSum=-0.576;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2652,291,0 chrXII 674177 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.69;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3231,339,0 chrXII 674307 . A G 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=117;Dels=0.00;FS=2.976;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.599;QD=23.51;ReadPosRankSum=2.324;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2784,303,0 chrXII 674781 . T C 1959 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1992,222,0 chrXII 675384 . T G 2778 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.77;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2811,312,0 chrXII 675407 . C T 3156 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.55;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3189,339,0 chrXII 676076 . G C 3883.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.73;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3883,414,0 chrXII 676097 . C T 4181.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.3480;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.74;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4181,436,0 chrXII 676381 . A G 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.0515;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.084;QD=23.15;ReadPosRankSum=1.682;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3251,348,0 chrXII 676447 . T A 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.498;QD=23.71;ReadPosRankSum=1.711;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3865,403,0 chrXII 676885 . G A 4509.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.2922;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.91;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4509,469,0 chrXII 677005 . A G 4492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=201;Dels=0.00;FS=2.940;HaplotypeScore=18.2006;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.339;QD=22.35;ReadPosRankSum=2.376;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:4492,478,0 chrXII 677084 . C G 4119.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=24.37;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4119,450,0 chrXII 677106 . C A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=24.80;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3671,393,0 chrXII 677132 . C T 3909.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=25.06;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3909,403,0 chrXII 677164 . A G 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=166;Dels=0.00;FS=5.644;HaplotypeScore=16.5510;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-2.229;QD=22.31;ReadPosRankSum=2.821;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:3,160:166:99:3703,405,0 chrXII 677383 . T C 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=194;Dels=0.00;FS=2.714;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-0.528;QD=19.21;ReadPosRankSum=2.411;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:3727,411,0 chrXII 677389 . A G 3715.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=19.05;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3715,396,0 chrXII 677402 . C G 2944 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=16.63;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:2977,333,0 chrXII 677631 . C A 6025.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=18.9283;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=24.20;SB=-2.896e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:6025,628,0 chrXII 677699 . T G 5800.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.07;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5800,636,0 chrXII 677798 . G A 7074.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=3.1726;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.89;SB=-3.577e+03 GT:AD:DP:GQ:PL 1/1:0,309:309:99:7074,736,0 chrXII 677804 . C A 6297.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.25;SB=-3.646e+03 GT:AD:DP:GQ:PL 1/1:0,311:311:99:6297,690,0 chrXII 677890 . T C 5082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=238;Dels=0.00;FS=3.961;HaplotypeScore=13.6962;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-1.155;QD=21.35;ReadPosRankSum=1.717;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:1,234:238:99:5082,555,0 chrXII 677900 . T C 4928.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=4.2363;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=20.79;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4928,529,0 chrXII 678106 . T C 4152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=178;Dels=0.00;FS=9.711;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=1.661;QD=23.33;ReadPosRankSum=2.961;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:4152,450,0 chrXII 678194 . C T 4271.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.0914;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.57;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4271,448,0 chrXII 678531 . C T 3025 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.63;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3058,318,0 chrXII 678658 . C T 2664 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2045;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2697,279,0 chrXII 678751 . T C 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=103;Dels=0.00;FS=6.323;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=1.398;QD=23.55;ReadPosRankSum=2.402;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2459,261,0 chrXII 678793 . C G 2068 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.98;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2101,228,0 chrXII 678817 . T A 2226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=4.638;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.325;QD=22.95;ReadPosRankSum=1.624;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2259,240,0 chrXII 678841 . T C 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=101;Dels=0.00;FS=7.274;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=1.231;QD=22.76;ReadPosRankSum=2.401;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2332,255,0 chrXII 679138 . C G 2672 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2705,300,0 chrXII 679175 . A C 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.262;QD=22.50;ReadPosRankSum=1.673;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2711,294,0 chrXII 679564 . A C 3743.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.31;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3743,402,0 chrXII 679714 . C G 3903.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.65;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3903,426,0 chrXII 680974 . A G 2743 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=17.81;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2776,312,0 chrXII 681115 . A G 4289.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=16.0180;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.37;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4289,465,0 chrXII 681443 . G A 4830.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.5706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4830,508,0 chrXII 681563 . A G 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=122;Dels=0.00;FS=3.022;HaplotypeScore=13.7970;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.478;QD=21.98;ReadPosRankSum=2.368;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2715,294,0 chrXII 681851 . A G 4309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=190;Dels=0.00;FS=7.694;HaplotypeScore=12.8653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.231;QD=22.68;ReadPosRankSum=2.397;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:2,184:190:99:4309,474,0 chrXII 682248 . A C 2617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.307;QD=21.10;ReadPosRankSum=1.704;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2650,288,0 chrXII 682321 . G A 3208 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.08;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3241,334,0 chrXII 682348 . T C 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.306;QD=22.55;ReadPosRankSum=1.679;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:3009,321,0 chrXII 682590 . C T 3178 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=25.22;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3211,333,0 chrXII 682688 . A G 3376.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.10;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3376,375,0 chrXII 682770 . C A 2754 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.57;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2787,306,0 chrXII 682830 . G A 4179.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.1525;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.33;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4179,439,0 chrXII 682910 . A G 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=143;Dels=0.00;FS=2.785;HaplotypeScore=10.8216;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=1.367;QD=24.19;ReadPosRankSum=2.415;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3459,372,0 chrXII 683405 . T C 3133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=4.533;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.147;QD=21.76;ReadPosRankSum=1.683;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3166,354,0 chrXII 683462 . G A 2222 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2255,234,0 chrXII 683798 . C T 2286 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.33;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2319,249,0 chrXII 683858 . T C 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=176;Dels=0.00;FS=7.000;HaplotypeScore=10.5317;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.600;QD=21.43;ReadPosRankSum=2.365;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3771,411,0 chrXII 683924 . A G 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.696;DP=183;Dels=0.00;FS=6.092;HaplotypeScore=15.1878;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.497;QD=22.95;ReadPosRankSum=2.928;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:3,180:183:99:4199,456,0 chrXII 683966 . T C 4497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.370;QD=24.71;ReadPosRankSum=1.713;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4497,492,0 chrXII 684046 . A G 4515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=4.172;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=0.954;QD=23.04;ReadPosRankSum=1.714;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4515,483,0 chrXII 684068 . T G 4838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-1.144;QD=22.71;ReadPosRankSum=1.716;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4838,522,0 chrXII 684167 . T C 4512.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.7921;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.12;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4512,492,0 chrXII 684641 . T C 3301.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.01;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3301,366,0 chrXII 684650 . T A 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.270;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.257;QD=23.17;ReadPosRankSum=1.665;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3591,370,0 chrXII 684653 . T C 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=162;Dels=0.00;FS=3.174;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.791;QD=20.92;ReadPosRankSum=1.647;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3389,372,0 chrXII 684785 . G A 4447.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.85;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4447,463,0 chrXII 684854 . G A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=24.33;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3674,396,0 chrXII 684923 . G A 3412.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.20;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3412,369,0 chrXII 685128 . T C 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.209;DP=128;Dels=0.00;FS=8.964;HaplotypeScore=13.0886;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-2.119;QD=22.57;ReadPosRankSum=3.237;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:4,123:128:99:2922,312,0 chrXII 685228 . A T 3009 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.2973;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.96;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3042,315,0 chrXII 685721 . A T 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=3.599;HaplotypeScore=7.2541;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-0.171;QD=19.75;ReadPosRankSum=1.708;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2837,294,0 chrXII 685853 . T C 4548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=196;Dels=0.00;FS=9.303;HaplotypeScore=12.7820;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=1.160;QD=23.20;ReadPosRankSum=2.882;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:3,192:196:99:4548,489,0 chrXII 685957 . T G 4015.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.2257;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=23.34;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4015,456,0 chrXII 685991 . T C 3543.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.34;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3543,387,0 chrXII 685997 . C T 3725.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=21.29;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3725,408,0 chrXII 686246 . T C 4378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=3.664;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.950;QD=23.41;ReadPosRankSum=1.713;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4378,477,0 chrXII 686405 . G A 3850.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.48;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3850,400,0 chrXII 686636 . C T 3086 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.1907;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.74;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3119,324,0 chrXII 686785 . G A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.78;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3782,394,0 chrXII 686789 . G A 3562.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.02;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.46;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3562,387,0 chrXII 686936 . C T 4312.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.43;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4312,448,0 chrXII 687460 . A G 709 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=14.18;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:84:742,84,0 chrXII 687506 . T C 791 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=12.97;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:90:824,90,0 chrXII 687579 . C G 155.06 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=11.93;SB=-1.268e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:21:188,21,0 chrXII 687601 . A G 142.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.549;DP=16;Dels=0.00;FS=4.260;HaplotypeScore=6.7524;MLEAC=1;MLEAF=0.500;MQ=52.32;MQ0=0;MQRankSum=1.898;QD=8.88;ReadPosRankSum=-2.224;SB=-6.606e-03 GT:AD:DP:GQ:PL 0/1:6,10:16:44:172,0,44 chrXII 687635 . T C 577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=-1.550;QD=15.18;ReadPosRankSum=1.641;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:1,37:38:69:610,69,0 chrXII 687647 . T C 791 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.51;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:93:824,93,0 chrXII 687712 . G A 1640 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=21.58;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1673,174,0 chrXII 687816 . G A 2130 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1504;MLEAC=2;MLEAF=1.00;MQ=44.42;MQ0=0;QD=26.30;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:2163,228,0 chrXII 687916 . G T 2227 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=24.47;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2260,249,0 chrXII 687973 . A C 1542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;MQRankSum=-1.683;QD=22.03;ReadPosRankSum=1.683;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1575,171,0 chrXII 687975 . A G 1538 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=22.29;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1571,168,0 chrXII 688008 . G A 1351 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=19.58;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1384,141,0 chrXII 688023 . T C 1275 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=18.21;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1308,141,0 chrXII 688445 . C G 1203 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=1;QD=19.10;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1236,135,0 chrXII 688464 . G A 1734 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=1;QD=23.12;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1767,180,0 chrXII 688522 . C T 1690 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=1;QD=23.80;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1723,180,0 chrXII 688789 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=24.93;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3100,319,0 chrXII 688847 . A G 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=0.866;QD=21.57;ReadPosRankSum=1.693;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1931,210,0 chrXII 688852 . G A 1722 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.02;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1755,180,0 chrXII 689031 . T C 1481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.852;QD=23.14;ReadPosRankSum=1.677;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1514,165,0 chrXII 689089 . T C 2402 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=25.55;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2435,270,0 chrXII 689216 . G T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.1340;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.83;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3354,343,0 chrXII 689545 . T C 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=3.952;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.163;QD=21.79;ReadPosRankSum=1.689;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3508,384,0 chrXII 689719 . G A 2508 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.59;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2541,267,0 chrXII 689937 . C T 2234 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.03;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2267,237,0 chrXII 689955 . C T 2452 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.70;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2485,258,0 chrXII 690162 . T C 2545 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.13;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2578,291,0 chrXII 690280 . A G 2789 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2822,306,0 chrXII 691520 . T C 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.473;QD=23.11;ReadPosRankSum=1.709;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3420,372,0 chrXII 691605 . A G 2968 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.19;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3001,327,0 chrXII 692250 . C T 2992 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.68;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3025,324,0 chrXII 692970 . C T 4617.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.8272;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.69;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4617,484,0 chrXII 693006 . A G 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=16.5351;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.056;QD=22.03;ReadPosRankSum=1.690;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3657,396,0 chrXII 693579 . A G 4254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.2186;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.491;QD=22.63;ReadPosRankSum=1.714;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4254,459,0 chrXII 693756 . G A 2590 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.9489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2623,276,0 chrXII 693825 . G A 2360 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.06;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2393,249,0 chrXII 694010 . G A 2092 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=26.15;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2125,219,0 chrXII 694040 . T A 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=1.576;QD=25.32;ReadPosRankSum=1.693;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2362,246,0 chrXII 694194 . T C 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=131;Dels=0.00;FS=2.576;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-1.116;QD=25.05;ReadPosRankSum=2.885;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:3282,357,0 chrXII 694211 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.31;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3266,339,0 chrXII 694316 . C G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.48;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3349,360,0 chrXII 694318 . C T 3525.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.50;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3525,367,0 chrXII 694377 . C T 3029 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=16.5691;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.93;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3062,333,0 chrXII 694737 . C T 2814 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=24.26;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2847,306,0 chrXII 694826 . A T 1536 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=21.94;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1569,171,0 chrXII 694841 . T C 1178 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=20.31;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1211,129,0 chrXII 694862 . T C 1106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=4.914;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-1.676;QD=17.56;ReadPosRankSum=1.676;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1139,123,0 chrXII 694939 . A G 2016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.617;QD=22.91;ReadPosRankSum=1.653;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:2049,222,0 chrXII 694951 . A G 2031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.866;QD=21.84;ReadPosRankSum=1.694;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2064,228,0 chrXII 694982 . C T 2002 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=22.49;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2035,210,0 chrXII 694995 . T G 1756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=3.120;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.433;QD=21.41;ReadPosRankSum=1.689;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:1,79:82:99:1789,195,0 chrXII 695163 . A G 2316 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2929;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.71;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2349,261,0 chrXII 695780 . T C 3828.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=15.1896;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.15;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:3828,423,0 chrXII 696350 . A G 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=128;Dels=0.00;FS=3.404;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.941;QD=23.59;ReadPosRankSum=1.650;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:3053,330,0 chrXII 696449 . G A 3391.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6597;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3391,354,0 chrXII 696795 . A G 3024 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.91;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3057,333,0 chrXII 696990 . T C 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.7747;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;MQRankSum=1.703;QD=23.28;ReadPosRankSum=0.400;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2780,300,0 chrXII 697266 . T G 3613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.1307;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.566;QD=23.46;ReadPosRankSum=0.233;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3613,399,0 chrXII 698944 . G A 4767.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4767,493,0 chrXII 699067 . C T 4309.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.1236;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.68;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4309,471,0 chrXII 699130 . A G 4416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=191;Dels=0.00;FS=3.420;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=0.907;QD=23.12;ReadPosRankSum=1.659;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:4416,477,0 chrXII 699705 . T C 2389 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=23.65;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2422,264,0 chrXII 699817 . G C 1822 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1855,201,0 chrXII 699895 . C T 1513 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=56.6683;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=22.92;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1546,165,0 chrXII 699911 . G A 1411 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.04;FS=0.000;HaplotypeScore=74.1649;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=19.87;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1444,150,0 chrXII 700764 . C T 5406.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.74;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:5406,553,0 chrXII 701180 . T C 1744 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.53;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1777,192,0 chrXII 701247 . A G 1043 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.96;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1076,117,0 chrXII 701265 . A G 1645 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=76;Dels=0.00;FS=18.692;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.421;QD=21.64;ReadPosRankSum=1.685;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,73:76:99:1678,180,0 chrXII 701320 . T C 2110 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=22.45;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2143,231,0 chrXII 701704 . T C 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=131;Dels=0.00;FS=3.037;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.736;QD=23.37;ReadPosRankSum=2.318;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3095,333,0 chrXII 701793 . A T 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=14.2850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.113;QD=22.80;ReadPosRankSum=1.686;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3466,366,0 chrXII 702363 . G A 2169 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.48;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2202,240,0 chrXII 702384 . T C 2277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.536;DP=113;Dels=0.00;FS=7.726;HaplotypeScore=5.9386;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.549;QD=20.15;ReadPosRankSum=3.762;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:5,107:113:99:2310,255,0 chrXII 702585 . C G 3996.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.7517;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=23.37;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,166:171:99:3996,432,0 chrXII 702786 . T C 4717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=222;Dels=0.00;FS=2.896;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=0.750;QD=21.25;ReadPosRankSum=2.416;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:2,219:222:99:4717,525,0 chrXII 702788 . G A 4944.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=21.97;SB=-2.536e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4944,528,0 chrXII 702990 . T C 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=187;Dels=0.00;FS=12.113;HaplotypeScore=10.4637;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=0.100;QD=18.51;ReadPosRankSum=2.423;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:2,183:187:99:3461,393,0 chrXII 703329 . G C 4083.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.42;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,195:200:99:4083,459,0 chrXII 703527 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.01;FS=0.000;HaplotypeScore=9.6557;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=19.99;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3659,379,0 chrXII 703539 . T A 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=181;Dels=0.00;FS=2.898;HaplotypeScore=6.4989;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-1.412;QD=20.25;ReadPosRankSum=2.340;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3665,379,0 chrXII 703572 . G A 4122.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.3192;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=20.31;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4122,453,0 chrXII 703659 . G A 4946.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.3208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.89;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4946,546,0 chrXII 704415 . A T 2394 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=17.87;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2427,261,0 chrXII 704793 . A G 4825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.724;DP=241;Dels=0.00;FS=7.971;HaplotypeScore=14.3664;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.644;QD=20.02;ReadPosRankSum=3.821;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:5,235:241:99:4825,537,0 chrXII 705704 . A G 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.114;HaplotypeScore=6.4320;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.323;QD=24.72;ReadPosRankSum=1.705;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3197,339,0 chrXII 706444 . A G 5330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=236;Dels=0.00;FS=3.417;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=1.481;QD=22.58;ReadPosRankSum=1.717;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:1,234:236:99:5330,579,0 chrXII 706720 . G A 4073.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=16.2004;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=20.57;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4073,427,0 chrXII 706747 . G A 3144 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.7218;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=17.97;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3177,333,0 chrXII 706756 . T C 2468 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;QD=14.52;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:2501,285,0 chrXII 706759 . C T 2394 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=39.61;MQ0=0;QD=14.69;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2427,270,0 chrXII 706780 . A G 2385 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;QD=15.39;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2418,264,0 chrXII 706807 . G A 2367 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=16.67;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2400,252,0 chrXII 706906 . T C 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.934;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.3754;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=1.860;QD=24.58;ReadPosRankSum=2.365;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3588,366,0 chrXII 706966 . C T 3890.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=23.29;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3890,420,0 chrXII 707029 . T G 3858.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=22.96;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3858,423,0 chrXII 707088 . C T 3611.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.24;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3611,387,0 chrXII 707098 . T C 3165 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=19.78;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3198,339,0 chrXII 707220 . A T 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.093;QD=21.90;ReadPosRankSum=1.670;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3723,385,0 chrXII 707365 . A T 3048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=3.736;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.373;QD=23.45;ReadPosRankSum=1.705;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3081,324,0 chrXII 708240 . G A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2473;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.35;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3651,384,0 chrXII 708425 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.52;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2996,321,0 chrXII 708955 . C T 4819.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=24.46;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4819,505,0 chrXII 709384 . A G 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=178;Dels=0.00;FS=7.777;HaplotypeScore=8.2816;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=1.677;QD=23.61;ReadPosRankSum=2.422;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4202,471,0 chrXII 709476 . T A 5175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=203;Dels=0.00;FS=2.948;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.784;QD=25.49;ReadPosRankSum=2.425;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:5175,541,0 chrXII 710068 . C A 2449 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.47;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2482,255,0 chrXII 710116 . A G 1565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.805;QD=22.04;ReadPosRankSum=1.683;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1598,168,0 chrXII 710493 . A T 2317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.521;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=127.5961;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=0.206;QD=16.20;ReadPosRankSum=-0.666;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2350,228,0 chrXII 710894 . C G 3824.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3824,414,0 chrXII 710957 . T G 3221.92 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.69;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3255,351,0 chrXII 711337 . A G 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=131;Dels=0.00;FS=7.843;HaplotypeScore=10.1656;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.520;QD=22.66;ReadPosRankSum=2.412;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:3001,336,0 chrXII 711667 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=156;Dels=0.00;FS=3.027;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-2.213;QD=22.66;ReadPosRankSum=2.355;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3535,381,0 chrXII 711837 . T G 4078.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.85;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:4078,453,0 chrXII 712103 . C T 3120 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.61;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3153,327,0 chrXII 712116 . T C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.682;QD=21.53;ReadPosRankSum=1.706;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2875,318,0 chrXII 712247 . T C 1985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=104;Dels=0.03;FS=0.000;HaplotypeScore=16.8506;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.218;QD=19.09;ReadPosRankSum=1.698;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2018,222,0 chrXII 712324 . T C 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=121;Dels=0.00;FS=7.482;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.113;QD=21.48;ReadPosRankSum=2.388;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2632,285,0 chrXII 712958 . C T 1563 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=24.81;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1596,165,0 chrXII 712976 . C T 1485 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.84;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1518,159,0 chrXII 712990 . A C 1653 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=22.04;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1686,183,0 chrXII 713021 . T C 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=98;Dels=0.00;FS=9.077;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=1.569;QD=20.94;ReadPosRankSum=3.366;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:4,93:98:99:2085,228,0 chrXII 713485 . A G 3724.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.16;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3724,402,0 chrXII 714338 . T C 5777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=238;Dels=0.00;FS=3.004;HaplotypeScore=14.5072;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.841;QD=24.27;ReadPosRankSum=2.367;SB=-2.900e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:5777,630,0 chrXII 714407 . A G 4755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=220;Dels=0.00;FS=2.925;HaplotypeScore=12.9658;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.614;QD=21.61;ReadPosRankSum=2.371;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:2,216:220:99:4755,519,0 chrXII 714439 . G A 4850.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.8763;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.99;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4850,508,0 chrXII 714641 . G A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.8673;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.61;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3889,429,0 chrXII 715128 . T C 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=162;Dels=0.00;FS=2.802;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.296;QD=23.13;ReadPosRankSum=2.404;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3747,414,0 chrXII 715262 . G A 4232.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.34;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4232,442,0 chrXII 715301 . T C 4267.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.6435;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.94;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4267,477,0 chrXII 715595 . A G 2787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=125;Dels=0.00;FS=2.838;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.390;QD=22.30;ReadPosRankSum=2.410;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:2,121:125:99:2820,306,0 chrXII 715622 . A T 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=151;Dels=0.00;FS=5.802;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.304;QD=22.54;ReadPosRankSum=2.899;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3403,369,0 chrXII 715955 . C T 5209.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=14.5936;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=26.18;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5209,538,0 chrXII 716177 . C T 3649.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.52;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3649,382,0 chrXII 716399 . C T 4478.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.5273;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.59;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4478,466,0 chrXII 716513 . A G 5206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=210;Dels=0.00;FS=3.313;HaplotypeScore=10.9281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.149;QD=24.79;ReadPosRankSum=1.682;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:1,207:210:99:5206,556,0 chrXII 716594 . T C 4742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=207;Dels=0.00;FS=6.042;HaplotypeScore=10.8111;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.221;QD=22.91;ReadPosRankSum=2.390;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:2,204:207:99:4742,525,0 chrXII 717136 . G A 2152 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.74;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2185,225,0 chrXII 717288 . G A 2081 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.48;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2114,219,0 chrXII 717679 . A G 2586 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2619,285,0 chrXII 718154 . A G 734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=13.8934;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.742;QD=14.39;ReadPosRankSum=1.662;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:81:767,81,0 chrXII 718515 . A G 1938 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4993;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=18.28;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1971,222,0 chrXII 718521 . T C 1947 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=18.37;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1980,213,0 chrXII 718797 . G A 2382 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=22.06;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2415,258,0 chrXII 718815 . T G 2109 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=19.17;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2142,234,0 chrXII 718821 . T C 2149 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3235;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.53;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2182,240,0 chrXII 719400 . G A 5041.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.5316;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5041,538,0 chrXII 720191 . A G 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.752;DP=144;Dels=0.00;FS=13.509;HaplotypeScore=14.3444;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.624;QD=21.33;ReadPosRankSum=2.908;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:3,139:144:99:3105,339,0 chrXII 720633 . G A 3039 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=25.97;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3072,324,0 chrXII 721200 . T C 4945.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.89;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4945,543,0 chrXII 721257 . G A 4425.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.8789;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.29;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4425,463,0 chrXII 721436 . A C 2572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.659;DP=119;Dels=0.00;FS=1.879;HaplotypeScore=13.8916;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.826;QD=21.61;ReadPosRankSum=3.457;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:5,112:119:99:2605,282,0 chrXII 721788 . C T 2922 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.63;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2955,306,0 chrXII 722023 . A G 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=4.472;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.660;QD=22.64;ReadPosRankSum=1.705;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2886,324,0 chrXII 723283 . G C 2169 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.13;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2202,243,0 chrXII 723463 . T C 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=4.162;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.095;QD=16.54;ReadPosRankSum=1.661;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2464,267,0 chrXII 723642 . C G 2137 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.7138;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:2170,234,0 chrXII 723840 . C T 2123 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.98;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2156,228,0 chrXII 724366 . G A 2723 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.50;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2756,282,0 chrXII 724534 . A G 1675 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.68;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1708,189,0 chrXII 724621 . T C 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.573;QD=21.74;ReadPosRankSum=1.692;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,86:89:99:1968,216,0 chrXII 724871 . T A 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.803;QD=22.50;ReadPosRankSum=1.704;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2846,294,0 chrXII 725284 . T C 5231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=221;Dels=0.00;FS=2.809;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.809;QD=23.67;ReadPosRankSum=2.394;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:2,218:221:99:5231,570,0 chrXII 725538 . C T 2628 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.7924;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=14.68;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:2661,276,0 chrXII 725578 . T C 3418.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.6079;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.68;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3418,378,0 chrXII 725693 . A T 3072 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.2650;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.00;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3105,321,0 chrXII 725936 . G A 3625.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.10;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3625,379,0 chrXII 726130 . T C 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=165;Dels=0.00;FS=5.586;HaplotypeScore=12.7654;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.130;QD=22.34;ReadPosRankSum=2.895;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3686,402,0 chrXII 727328 . A G 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2045;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.571;QD=23.63;ReadPosRankSum=2.415;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3308,372,0 chrXII 727688 . A G 4031.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.30;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4031,456,0 chrXII 728082 . G A 4079.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.92;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4079,421,0 chrXII 728349 . T A 3211.99 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=176;Dels=0.00;FS=2.503;HaplotypeScore=7.1672;MLEAC=2;MLEAF=1.00;MQ=49.98;MQ0=0;MQRankSum=0.583;QD=18.25;ReadPosRankSum=2.949;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:3245,360,0 chrXII 728357 . T A 2874 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;MQRankSum=-1.421;QD=18.42;ReadPosRankSum=1.710;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2907,312,0 chrXII 728358 . A T 2857 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=3.938;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;MQRankSum=-0.155;QD=18.31;ReadPosRankSum=1.710;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2890,312,0 chrXII 728371 . A C 2921 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.7700;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=18.49;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:2954,318,0 chrXII 728568 . C A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0816;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=24.20;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3654,384,0 chrXII 728665 . G A 4042.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.09;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4042,435,0 chrXII 728790 . A G 1726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-1.121;QD=20.31;ReadPosRankSum=1.651;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1759,189,0 chrXII 728808 . C T 1830 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.32;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1863,195,0 chrXII 729050 . T C 4235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.961;DP=181;Dels=0.00;FS=2.550;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.421;QD=23.40;ReadPosRankSum=2.871;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:3,176:181:99:4235,474,0 chrXII 729104 . A G 3985.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.75;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3985,421,0 chrXII 729242 . T C 4460.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=22.6484;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.65;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4460,480,0 chrXII 729344 . C T 3644.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.2999;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.36;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3644,390,0 chrXII 729446 . A G 3616.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.2983;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.74;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3616,387,0 chrXII 729605 . G T 4678.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=14.1316;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.99;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4678,496,0 chrXII 729962 . T C 5488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=9.0062;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.734;QD=22.58;ReadPosRankSum=1.689;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:5488,603,0 chrXII 730717 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.14;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3100,321,0 chrXII 731012 . C T 4224.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.7026;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4224,439,0 chrXII 731151 . A G 5378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=15.0288;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.213;QD=23.48;ReadPosRankSum=1.717;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:1,227:229:99:5378,594,0 chrXII 731466 . A C 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-0.312;QD=22.97;ReadPosRankSum=1.704;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,121:125:99:2904,318,0 chrXII 731519 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=25.30;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3094,319,0 chrXII 731569 . A C 2761 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.5063;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=22.63;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2794,300,0 chrXII 731664 . T C 893 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.52;MQ0=0;QD=21.26;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:926,102,0 chrXII 731668 . T A 537 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;QD=17.32;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:570,69,0 chrXII 731669 . G A 536 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.48;MQ0=0;QD=17.87;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:69:569,69,0 chrXII 731671 . A T 534 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;QD=18.41;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:567,69,0 chrXII 731736 . G A 30.18 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;DP=10;Dels=0.00;FS=10.792;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=18.42;MQ0=1;MQRankSum=-1.666;QD=3.02;ReadPosRankSum=-1.666;SB=-1.442e+01 GT:AD:DP:GQ:PL 0/1:2,7:10:11:60,0,11 chrXII 731741 . A G 30.18 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;DP=13;Dels=0.00;FS=10.792;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=16.15;MQ0=4;MQRankSum=-1.666;QD=2.32;ReadPosRankSum=-0.762;SB=-1.442e+01 GT:AD:DP:GQ:PL 0/1:5,8:13:11:60,0,11 chrXII 732073 . T C 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.242;QD=21.98;ReadPosRankSum=2.411;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2824,303,0 chrXII 732212 . G T 2943 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=20.30;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:2976,312,0 chrXII 732213 . A C 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=143;Dels=0.00;FS=13.601;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;MQRankSum=1.162;QD=20.08;ReadPosRankSum=2.937;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:2904,318,0 chrXII 732435 . G A 4193.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.9859;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=24.10;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4193,439,0 chrXII 732947 . A G 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.425;QD=25.24;ReadPosRankSum=1.711;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:4241,462,0 chrXII 732967 . G A 3847.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.4808;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.89;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3847,403,0 chrXII 733803 . T C 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.062;DP=171;Dels=0.00;FS=8.857;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.266;QD=22.56;ReadPosRankSum=2.105;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3857,394,0 chrXII 733837 . G A 3908.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.4727;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.26;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3908,406,0 chrXII 734033 . A G 4368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=179;Dels=0.00;FS=4.511;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.856;QD=24.40;ReadPosRankSum=1.693;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4368,471,0 chrXII 734064 . A G 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=141;Dels=0.00;FS=2.404;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-2.622;QD=21.18;ReadPosRankSum=2.722;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:3020,310,0 chrXII 734068 . T C 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.977;QD=21.86;ReadPosRankSum=1.706;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2941,327,0 chrXII 734117 . C A 3205.99 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.52;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3239,339,0 chrXII 734157 . A T 4242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.5477;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.885;QD=23.57;ReadPosRankSum=1.713;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4242,459,0 chrXII 734238 . G A 3859.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.25;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3859,408,0 chrXII 734286 . T A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=25.87;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3700,385,0 chrXII 734442 . A G 3705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=3.796;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;MQRankSum=-0.700;QD=24.54;ReadPosRankSum=1.686;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3705,393,0 chrXII 734446 . C T 3750.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;QD=25.17;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3750,385,0 chrXII 734460 . T C 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=135;Dels=0.00;FS=3.023;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;MQRankSum=0.064;QD=23.27;ReadPosRankSum=2.322;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3175,345,0 chrXII 734585 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.8027;MLEAC=2;MLEAF=1.00;MQ=30.18;MQ0=0;QD=17.53;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2943,324,0 chrXII 734599 . T C 2839 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=0;QD=16.70;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2872,327,0 chrXII 734602 . C T 2811 SnpCluster AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;QD=17.04;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2844,312,0 chrXII 734608 . C A 2706 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.91;MQ0=0;QD=16.60;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2739,303,0 chrXII 734612 . T G 2452 SnpCluster AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=15.62;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2485,279,0 chrXII 734628 . T C 2090 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.30;MQ0=0;QD=14.82;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2123,237,0 chrXII 734633 . G C 2155 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=15.85;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2188,240,0 chrXII 734648 . C A 1790 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.99;MQ0=0;QD=17.21;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1823,195,0 chrXII 734649 . A T 1725 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.99;MQ0=0;QD=16.59;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1758,198,0 chrXII 734674 . G A 1736 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=0;QD=17.36;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1769,195,0 chrXII 734706 . C T 1794 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=0;QD=17.76;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1827,201,0 chrXII 734728 . T C 1577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=104;Dels=0.00;FS=10.078;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;MQRankSum=-1.572;QD=15.16;ReadPosRankSum=2.352;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:2,99:104:99:1610,186,0 chrXII 734732 . T C 1495 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;QD=14.95;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1528,174,0 chrXII 734740 . A G 1585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;MQRankSum=-0.398;QD=15.54;ReadPosRankSum=2.401;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1618,186,0 chrXII 734763 . C G 1169 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=0;QD=12.71;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1202,144,0 chrXII 734768 . A C 1277 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=0;QD=13.16;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1310,156,0 chrXII 734773 . G A 1375 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;QD=13.89;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1408,165,0 chrXII 734786 . A T 1550 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=14.35;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1583,180,0 chrXII 734798 . G T 1660 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.59;MQ0=0;QD=16.44;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1693,189,0 chrXII 735461 . C T 4801.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.02;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4801,522,0 chrXII 735713 . A G 4601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.165;DP=203;Dels=0.00;FS=14.121;HaplotypeScore=11.8259;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.395;QD=22.67;ReadPosRankSum=3.382;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:4,198:203:99:4601,501,0 chrXII 735833 . A G 5254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=242;Dels=0.00;FS=11.538;HaplotypeScore=14.2469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.529;QD=21.71;ReadPosRankSum=2.971;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:3,238:242:99:5254,585,0 chrXII 736001 . A G 5990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=262;Dels=0.00;FS=2.697;HaplotypeScore=19.1658;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.748;QD=22.86;ReadPosRankSum=2.431;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:2,259:262:99:5990,660,0 chrXII 736154 . G A 4918.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=20.3963;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.35;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4918,517,0 chrXII 736586 . G A 4692.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4692,484,0 chrXII 737850 . G C 2793 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.67;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2826,300,0 chrXII 738097 . G C 4099.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.2747;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.69;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4099,438,0 chrXII 738125 . T C 4195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.327;DP=184;Dels=0.00;FS=8.868;HaplotypeScore=8.7349;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.289;QD=22.80;ReadPosRankSum=3.384;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:4,180:184:99:4195,459,0 chrXII 739320 . A G 4186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=171;Dels=0.00;FS=3.354;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=1.185;QD=24.48;ReadPosRankSum=1.712;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4186,459,0 chrXII 742174 . C T 3803.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.52;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3803,397,0 chrXII 743587 . C T 2946 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2979,315,0 chrXII 743763 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3722,385,0 chrXII 744290 . G T 3140 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.51;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,142:146:99:3173,339,0 chrXII 744299 . C T 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.757;QD=22.34;ReadPosRankSum=0.064;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3071,318,0 chrXII 744626 . T G 2880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.331;QD=21.98;ReadPosRankSum=1.600;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2913,321,0 chrXII 744842 . T C 2738 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2771,300,0 chrXII 744885 . T A 2274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.480;QD=23.44;ReadPosRankSum=1.696;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2307,246,0 chrXII 745460 . A G 2144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=102;Dels=0.00;FS=3.372;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.381;QD=21.02;ReadPosRankSum=1.697;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2177,243,0 chrXII 745609 . C G 3288.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3288,360,0 chrXII 745660 . C G 2925 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.67;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,130:135:99:2958,318,0 chrXII 745706 . C T 3568.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.6775;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.27;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3568,375,0 chrXII 745826 . T A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.3663;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3575,387,0 chrXII 747241 . A G 2630 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.13;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2663,294,0 chrXII 747529 . G T 3349.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=15.3804;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.63;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3349,345,0 chrXII 747877 . C T 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.785;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.6178;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.624;QD=22.93;ReadPosRankSum=0.244;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2968,303,0 chrXII 750864 . T C 2509 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2542,276,0 chrXII 752907 . G T 4264.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.65;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4264,454,0 chrXII 753184 . A T 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.7946;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.732;QD=20.40;ReadPosRankSum=1.672;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3550,372,0 chrXII 753609 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.38;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2769,291,0 chrXII 755553 . C T 4146.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.8451;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4146,433,0 chrXII 755941 . A G 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=3.362;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.653;QD=24.77;ReadPosRankSum=1.711;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:4162,459,0 chrXII 756137 . C T 3365.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.4548;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.05;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3365,352,0 chrXII 756260 . A G 4484.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.2574;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.35;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4484,483,0 chrXII 756724 . A G 4505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=202;Dels=0.00;FS=3.257;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.862;QD=22.30;ReadPosRankSum=1.715;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:1,198:202:99:4505,489,0 chrXII 756805 . T A 5115.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.9324;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.58;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:5115,538,0 chrXII 757341 . T C 2360 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.06;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2393,252,0 chrXII 757905 . T A 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=126;Dels=0.00;FS=7.598;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.585;QD=21.51;ReadPosRankSum=2.370;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2743,294,0 chrXII 758451 . A C 4543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=201;Dels=0.00;FS=3.032;HaplotypeScore=13.5290;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.474;QD=22.60;ReadPosRankSum=1.698;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4543,507,0 chrXII 758876 . G C 4605.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.5776;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.80;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4605,501,0 chrXII 759053 . T C 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.240;QD=22.38;ReadPosRankSum=2.387;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2674,288,0 chrXII 760396 . G A 2745 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2778,303,0 chrXII 760719 . A T 2995 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.04;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3028,324,0 chrXII 762232 . G A 2428 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.0401;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.91;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2461,258,0 chrXII 762247 . A T 2260 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=23.06;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2293,237,0 chrXII 762367 . T C 1278 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1311,141,0 chrXII 763127 . A G 4012.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.4917;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.60;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4012,441,0 chrXII 763325 . A G 3827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=162;Dels=0.00;FS=5.863;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.298;QD=23.62;ReadPosRankSum=2.919;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:3827,420,0 chrXII 764796 . T A 4635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=193;Dels=0.00;FS=2.767;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.388;QD=24.02;ReadPosRankSum=2.424;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4635,484,0 chrXII 765044 . G A 5050.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=3.1179;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.80;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5050,529,0 chrXII 765047 . A G 4893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.763;DP=258;Dels=0.00;FS=7.962;HaplotypeScore=4.5175;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=0.116;QD=18.97;ReadPosRankSum=3.800;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:5,251:258:99:4893,534,0 chrXII 765395 . G A 4909.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.82;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:4909,511,0 chrXII 765398 . C T 4747.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.00;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4747,502,0 chrXII 765566 . A G 5870.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=17.6030;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.63;SB=-3.716e+03 GT:AD:DP:GQ:PL 1/1:0,294:299:99:5870,657,0 chrXII 765944 . A G 4195.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.7529;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.492;QD=20.27;ReadPosRankSum=1.681;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:1,203:207:99:4195,474,0 chrXII 765989 . G A 4757.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.44;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4757,499,0 chrXII 766039 . C T 4001.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.60;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4001,426,0 chrXII 767752 . T G 2429 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.30;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2462,270,0 chrXII 769312 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.31;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1455,150,0 chrXII 770182 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.97;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3471,375,0 chrXII 770842 . A T 6256.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=9.7105;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.92;SB=-3.559e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:6256,673,0 chrXII 771112 . G A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=20.73;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3337,343,0 chrXII 771115 . G A 2964 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=18.30;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:2997,327,0 chrXII 771397 . T C 4845.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.2764;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.462;QD=24.35;ReadPosRankSum=2.400;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4845,522,0 chrXII 771559 . G T 5096.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.9155;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.16;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5096,555,0 chrXII 771799 . G A 3895.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.65;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3895,409,0 chrXII 773016 . G T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3289,345,0 chrXII 773142 . C T 4147.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.29;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4147,436,0 chrXII 773493 . A C 2670 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.0009;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.54;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,140:144:99:2703,294,0 chrXII 773709 . T G 3756.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=17.8199;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.84;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3756,414,0 chrXII 773796 . A G 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=3.318;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.519;QD=24.21;ReadPosRankSum=1.637;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3534,396,0 chrXII 774096 . G C 2974 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.53;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3007,324,0 chrXII 774625 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.3816;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.82;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3742,391,0 chrXII 775773 . T C 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=120;Dels=0.00;FS=6.434;HaplotypeScore=6.7673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.375;QD=21.53;ReadPosRankSum=2.408;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2617,282,0 chrXII 776005 . T C 3824.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3824,414,0 chrXII 776349 . A G 2179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=4.728;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=-1.080;QD=21.57;ReadPosRankSum=1.629;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2212,243,0 chrXII 776367 . A G 1925 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=20.48;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1958,213,0 chrXII 776377 . A T 1803 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=19.18;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1836,189,0 chrXII 776391 . C T 1745 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=18.18;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1778,192,0 chrXII 776421 . T G 1703 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;QD=15.92;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1736,189,0 chrXII 776424 . T A 1794 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=16.77;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1827,192,0 chrXII 776625 . T G 2894 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=22.79;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2927,324,0 chrXII 776887 . G A 3628.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.11;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3628,381,0 chrXII 776923 . A G 4199.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.0744;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.20;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4199,462,0 chrXII 777088 . T C 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.01;FS=0.000;HaplotypeScore=8.4370;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-1.086;QD=22.61;ReadPosRankSum=1.693;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4047,438,0 chrXII 777115 . T C 3852.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=170;Dels=0.00;FS=3.010;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=1.287;QD=22.66;ReadPosRankSum=2.406;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3852,423,0 chrXII 777169 . C G 3745.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.0808;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.52;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3745,417,0 chrXII 777487 . G A 4238.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.3810;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.19;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4238,450,0 chrXII 777814 . A G 4313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=205;Dels=0.00;FS=5.220;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.946;QD=21.04;ReadPosRankSum=2.966;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:3,202:205:99:4313,465,0 chrXII 778114 . T G 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.355;QD=24.49;ReadPosRankSum=1.689;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3943,429,0 chrXII 778146 . A G 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.401;HaplotypeScore=6.5539;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.080;QD=23.86;ReadPosRankSum=1.663;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3603,390,0 chrXII 778218 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.77;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3268,357,0 chrXII 778362 . G A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.14;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3355,363,0 chrXII 778497 . G A 3196 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=16.2169;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.03;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3229,336,0 chrXII 778775 . T G 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=3.413;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.921;QD=22.36;ReadPosRankSum=1.710;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3556,390,0 chrXII 778938 . T C 2963 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.58;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2996,324,0 chrXII 779007 . C T 3491.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.8362;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.91;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3491,364,0 chrXII 779222 . G A 4787.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.42;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4787,493,0 chrXII 779367 . G A 3865.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.12;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3865,403,0 chrXII 779373 . G A 3468.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.37;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3468,381,0 chrXII 779901 . G A 4138.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.51;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4138,430,0 chrXII 780129 . T C 3579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.075;DP=164;Dels=0.00;FS=8.367;HaplotypeScore=15.8678;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.240;QD=21.82;ReadPosRankSum=3.342;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:4,160:164:99:3579,387,0 chrXII 780201 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.86;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3341,351,0 chrXII 780306 . A G 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=0.564;QD=20.73;ReadPosRankSum=1.671;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3544,396,0 chrXII 780315 . C G 3540.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.82;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3540,390,0 chrXII 780447 . T A 3618.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.49;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3618,376,0 chrXII 780473 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.18;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3282,348,0 chrXII 780550 . A G 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=127;Dels=0.00;FS=7.245;HaplotypeScore=6.3708;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=1.396;QD=25.87;ReadPosRankSum=2.372;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:3285,351,0 chrXII 780841 . A G 2608 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.7453;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.88;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2641,297,0 chrXII 780981 . A G 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.560;QD=23.75;ReadPosRankSum=1.675;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2907,315,0 chrXII 781630 . G A 2293 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;QD=16.74;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2326,246,0 chrXII 781631 . C G 2234 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;QD=16.07;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2267,249,0 chrXII 781671 . T A 1991 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;QD=12.85;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2024,216,0 chrXII 781674 . C T 1988 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=12.58;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2021,210,0 chrXII 781778 . A C 3980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.583;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.663;QD=24.57;ReadPosRankSum=1.689;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3980,441,0 chrXII 781999 . A G 4194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=185;Dels=0.00;FS=11.040;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.148;QD=22.67;ReadPosRankSum=2.918;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:3,180:185:99:4194,468,0 chrXII 782137 . A G 4248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=175;Dels=0.00;FS=3.007;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.617;QD=24.27;ReadPosRankSum=2.365;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:4248,474,0 chrXII 782809 . A G 3381.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.26;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3381,372,0 chrXII 782815 . T C 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=152;Dels=0.00;FS=3.185;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=-0.228;QD=21.08;ReadPosRankSum=1.709;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3237,351,0 chrXII 782839 . A G 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=0.697;QD=17.18;ReadPosRankSum=2.418;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:2730,306,0 chrXII 782878 . C T 3832.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=19.96;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3832,400,0 chrXII 782905 . G T 4133.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.41;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4133,430,0 chrXII 782987 . G A 3374.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2559;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.11;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3374,357,0 chrXII 783530 . T C 1930 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.71;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1963,216,0 chrXII 783557 . C T 1837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.847;HaplotypeScore=8.9258;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=0.768;QD=18.94;ReadPosRankSum=1.554;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1870,198,0 chrXII 783739 . A G 2439 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.76;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2472,285,0 chrXII 783750 . C T 2592 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.7861;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=18.38;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2625,285,0 chrXII 783852 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=14.27;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:3058,318,0 chrXII 783855 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=13.29;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:2903,306,0 chrXII 784087 . T G 4255.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.2009;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=20.17;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4255,477,0 chrXII 784121 . C T 4518.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=8.8972;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=19.39;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:4518,489,0 chrXII 784144 . T C 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=207;Dels=0.00;FS=4.544;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=1.715;QD=18.39;ReadPosRankSum=1.715;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,204:207:99:3806,414,0 chrXII 784173 . C A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.1859;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;QD=19.94;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3788,391,0 chrXII 784196 . G A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.33;MQ0=0;QD=19.33;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3261,339,0 chrXII 784218 . C A 3044 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.33;MQ0=0;QD=20.16;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3077,330,0 chrXII 784219 . G A 3120 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.84;MQ0=0;QD=20.39;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3153,330,0 chrXII 784223 . C A 3203 SnpCluster AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.33;MQ0=0;QD=19.41;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3236,348,0 chrXII 784242 . A G 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=156;Dels=0.00;FS=2.979;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=0;MQRankSum=0.614;QD=19.27;ReadPosRankSum=2.418;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3039,342,0 chrXII 784276 . A G 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=143;Dels=0.00;FS=3.015;HaplotypeScore=4.6717;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=0.610;QD=19.86;ReadPosRankSum=2.381;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2873,312,0 chrXII 784462 . A G 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=119;Dels=0.00;FS=2.597;HaplotypeScore=8.5808;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;MQRankSum=1.805;QD=19.80;ReadPosRankSum=2.941;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2389,264,0 chrXII 784477 . T A 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=3.941;HaplotypeScore=7.9873;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-0.273;QD=20.33;ReadPosRankSum=1.671;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2351,249,0 chrXII 784725 . G T 2108 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.73;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2141,222,0 chrXII 784788 . C T 2030 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.31;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2063,219,0 chrXII 784849 . G A 2141 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=80.0158;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.41;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2174,237,0 chrXII 785038 . G A 3094 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4196;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.17;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3127,330,0 chrXII 785067 . T A 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.071;DP=151;Dels=0.00;FS=8.395;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.065;QD=23.10;ReadPosRankSum=3.377;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:4,147:151:99:3488,358,0 chrXII 785227 . C T 3900.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.38;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3900,426,0 chrXII 786201 . G T 2827 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=23.36;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2860,300,0 chrXII 786288 . C T 2249 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=10.8335;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=21.22;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2282,237,0 chrXII 786298 . C T 2076 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=19.77;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2109,225,0 chrXII 786324 . T C 2119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=47.13;MQ0=0;MQRankSum=-0.822;QD=17.81;ReadPosRankSum=1.703;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2152,231,0 chrXII 786333 . T C 2185 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=18.21;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2218,243,0 chrXII 786375 . C T 1694 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=15.98;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1727,186,0 chrXII 786421 . A G 1258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=38.39;MQ0=0;MQRankSum=-1.039;QD=13.24;ReadPosRankSum=1.696;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1291,141,0 chrXII 786429 . A C 1198 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.58;MQ0=0;QD=11.98;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1231,138,0 chrXII 786436 . A G 1240 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=3.322;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;MQRankSum=-1.458;QD=12.28;ReadPosRankSum=1.698;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1273,141,0 chrXII 786439 . C T 1362 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.46;MQ0=0;QD=13.35;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1395,147,0 chrXII 786447 . A G 1414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=110;Dels=0.00;FS=3.512;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;MQRankSum=-0.787;QD=12.85;ReadPosRankSum=1.669;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:1447,162,0 chrXII 786562 . T C 2962 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=23.51;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2995,324,0 chrXII 786949 . C T 3542.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3542,390,0 chrXII 787028 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.70;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3508,367,0 chrXII 787097 . G A 3555.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=24.52;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3555,384,0 chrXII 787246 . C G 2290 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=23.85;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2323,255,0 chrXII 787306 . C T 2445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.531;QD=19.72;ReadPosRankSum=1.592;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2478,270,0 chrXII 787307 . T A 2542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=126;Dels=0.00;FS=2.514;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.815;QD=20.17;ReadPosRankSum=2.831;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2575,279,0 chrXII 787382 . T C 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.275;QD=24.40;ReadPosRankSum=1.705;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3132,336,0 chrXII 787491 . A C 4471.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.57;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4471,489,0 chrXII 787756 . T C 3784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=170;Dels=0.00;FS=9.490;HaplotypeScore=15.9675;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=0.200;QD=22.26;ReadPosRankSum=2.376;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:2,164:170:99:3784,414,0 chrXII 788233 . A G 5384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.855;QD=22.53;ReadPosRankSum=1.673;SB=-2.980e+03 GT:AD:DP:GQ:PL 1/1:1,232:239:99:5384,594,0 chrXII 788350 . T C 6372.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=16.3840;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.26;SB=-3.022e+03 GT:AD:DP:GQ:PL 1/1:0,270:274:99:6372,699,0 chrXII 788548 . G A 4824.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.30;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4824,508,0 chrXII 788601 . C A 4012.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.1781;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;QD=21.01;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4012,418,0 chrXII 788615 . A G 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=184;Dels=0.00;FS=5.938;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;MQRankSum=-0.896;QD=19.29;ReadPosRankSum=2.907;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:3550,381,0 chrXII 788626 . A G 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=182;Dels=0.00;FS=5.903;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;MQRankSum=-0.873;QD=18.74;ReadPosRankSum=2.917;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:3411,375,0 chrXII 788638 . A G 3372.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=17.84;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3372,372,0 chrXII 788987 . G A 5594.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=24.11;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5594,583,0 chrXII 789096 . C T 2480 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.3592;MLEAC=2;MLEAF=1.00;MQ=35.44;MQ0=0;QD=18.10;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,131:137:99:2513,264,0 chrXII 789121 . G A 1183.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.672;DP=132;Dels=0.00;FS=28.444;HaplotypeScore=30.0242;MLEAC=1;MLEAF=0.500;MQ=29.22;MQ0=0;MQRankSum=1.489;QD=8.96;ReadPosRankSum=-0.680;SB=-3.830e+02 GT:AD:DP:GQ:PL 0/1:45,87:132:70:1213,0,70 chrXII 789125 . T A 1178 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.267;DP=128;Dels=0.00;FS=4.730;HaplotypeScore=28.6787;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;MQRankSum=0.077;QD=9.20;ReadPosRankSum=2.143;SB=-4.699e+02 GT:AD:DP:GQ:PL 1/1:7,81:128:65:1211,65,0 chrXII 789129 . A G 910.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.882;DP=116;Dels=0.00;FS=24.038;HaplotypeScore=25.7360;MLEAC=1;MLEAF=0.500;MQ=28.84;MQ0=0;MQRankSum=-0.020;QD=7.84;ReadPosRankSum=-0.026;SB=-3.110e+02 GT:AD:DP:GQ:PL 0/1:44,72:116:99:940,0,105 chrXII 789130 . C T 984.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.708;DP=114;Dels=0.00;FS=47.130;HaplotypeScore=26.5247;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-1.293;QD=8.63;ReadPosRankSum=-1.607;SB=-3.090e+02 GT:AD:DP:GQ:PL 0/1:35,77:114:21:1014,0,21 chrXII 789131 . A G 917.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.370;DP=114;Dels=0.00;FS=46.067;HaplotypeScore=26.5247;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.157;QD=8.04;ReadPosRankSum=-0.932;SB=-2.800e+02 GT:AD:DP:GQ:PL 0/1:37,77:114:32:947,0,32 chrXII 789140 . A G 1089 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=27.9765;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.496;QD=9.81;ReadPosRankSum=2.405;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:1122,126,0 chrXII 789146 . T G 840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.538;DP=112;Dels=0.00;FS=7.825;HaplotypeScore=18.9019;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.912;QD=7.50;ReadPosRankSum=3.343;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:5,99:112:78:873,78,0 chrXII 789154 . A G 616.33 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.456;DP=133;Dels=0.00;FS=1.678;HaplotypeScore=31.9321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.744;QD=4.63;ReadPosRankSum=4.397;SB=-8.453e+02 GT:AD:DP:GQ:PL 1/1:35,97:133:14:649,14,0 chrXII 789167 . T G 435.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.957;DP=147;Dels=0.01;FS=19.417;HaplotypeScore=79.2601;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-1.145;QD=2.96;ReadPosRankSum=1.053;SB=-5.890e+02 GT:AD:DP:GQ:PL 0/1:33,90:146:99:465,0,117 chrXII 789175 . A G 397.06 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.942;DP=157;Dels=0.00;FS=26.410;HaplotypeScore=51.0667;MLEAC=1;MLEAF=0.500;MQ=28.94;MQ0=0;MQRankSum=-1.844;QD=2.53;ReadPosRankSum=-2.987;SB=-6.491e+02 GT:AD:DP:GQ:PL 0/1:46,110:157:16:427,0,16 chrXII 789188 . T G 317.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.323;DP=152;Dels=0.00;FS=19.921;HaplotypeScore=19.7245;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;MQRankSum=-0.145;QD=2.09;ReadPosRankSum=4.587;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:25,124:152:15:350,15,0 chrXII 789196 . A G 376.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.879;DP=158;Dels=0.00;FS=10.328;HaplotypeScore=12.1663;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;MQRankSum=0.428;QD=2.38;ReadPosRankSum=0.521;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:11,147:158:23:409,23,0 chrXII 789214 . C T 627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=6.194;DP=184;Dels=0.00;FS=1.462;HaplotypeScore=4.2427;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=0;MQRankSum=0.877;QD=3.41;ReadPosRankSum=-0.350;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:38,146:184:48:660,48,0 chrXII 789215 . A G 566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.283;DP=184;Dels=0.00;FS=1.462;HaplotypeScore=4.2427;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=0;MQRankSum=-0.292;QD=3.08;ReadPosRankSum=0.115;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:38,146:184:42:599,42,0 chrXII 789230 . G T 665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=184;Dels=0.00;FS=2.034;HaplotypeScore=3.8348;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=0;MQRankSum=-1.503;QD=3.61;ReadPosRankSum=3.374;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:4,179:184:52:698,52,0 chrXII 789259 . A G 239.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.101;DP=130;Dels=0.00;FS=143.315;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=29.58;MQ0=0;MQRankSum=-1.647;QD=1.84;ReadPosRankSum=3.281;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:52,78:130:99:269,0,336 chrXII 789264 . T C 144.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.148;DP=110;Dels=0.00;FS=152.638;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.34;MQ0=0;MQRankSum=0.322;QD=1.31;ReadPosRankSum=8.232;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,64:110:99:174,0,291 chrXII 789266 . G A 192.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.056;DP=108;Dels=0.00;FS=144.988;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.35;MQ0=0;MQRankSum=-0.166;QD=1.78;ReadPosRankSum=8.801;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,64:108:99:222,0,309 chrXII 789268 . G A 184.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.276;DP=106;Dels=0.00;FS=137.661;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.36;MQ0=0;MQRankSum=-0.442;QD=1.74;ReadPosRankSum=8.678;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,64:106:99:214,0,273 chrXII 789269 . G A 192.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.700;DP=106;Dels=0.00;FS=137.740;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.36;MQ0=0;MQRankSum=-0.037;QD=1.81;ReadPosRankSum=8.549;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,64:106:99:222,0,236 chrXII 789272 . G T 220.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.983;DP=109;Dels=0.00;FS=136.256;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.35;MQ0=0;MQRankSum=0.080;QD=2.02;ReadPosRankSum=7.569;SB=-6.006e+00 GT:AD:DP:GQ:PL 0/1:39,70:109:99:250,0,174 chrXII 789281 . C G 493 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=33.99;MQ0=0;QD=6.24;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:57:526,57,0 chrXII 789356 . G A 4259.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=21.62;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4259,445,0 chrXII 789373 . T C 4409.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=20.90;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4409,489,0 chrXII 789615 . C G 3493.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=19.62;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3493,378,0 chrXII 789623 . A G 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.458;DP=169;Dels=0.00;FS=3.879;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.036;QD=19.02;ReadPosRankSum=0.909;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3247,335,0 chrXII 790622 . A G 4893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=5.082;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=0.623;QD=23.87;ReadPosRankSum=1.698;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:4893,552,0 chrXII 790674 . G T 6775.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=33.4139;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.20;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,280:280:99:6775,694,0 chrXII 790718 . T C 8640.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.272;DP=368;Dels=0.00;FS=2.397;HaplotypeScore=13.7600;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.391;QD=23.48;ReadPosRankSum=3.410;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:4,363:368:99:8640,925,0 chrXII 790747 . C T 10134.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.723;DP=399;Dels=0.00;FS=0.000;HaplotypeScore=12.4204;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.519;QD=25.40;ReadPosRankSum=1.261;SB=-2.840e+03 GT:AD:DP:GQ:PL 1/1:1,396:399:99:10134,1052,0 chrXII 790841 . T C 8108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=355;Dels=0.00;FS=5.647;HaplotypeScore=21.4521;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=-2.470;QD=22.84;ReadPosRankSum=2.969;SB=-3.781e+03 GT:AD:DP:GQ:PL 1/1:3,351:355:99:8108,883,0 chrXII 790871 . G A 8179.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.723;DP=379;Dels=0.00;FS=3.522;HaplotypeScore=9.0897;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=1.237;QD=21.58;ReadPosRankSum=-0.266;SB=-4.626e+03 GT:AD:DP:GQ:PL 1/1:1,377:379:99:8179,897,0 chrXII 790882 . T C 8162.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=407;Dels=0.00;FS=2.972;HaplotypeScore=20.3598;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-2.129;QD=20.05;ReadPosRankSum=2.395;SB=-4.864e+03 GT:AD:DP:GQ:PL 1/1:2,403:407:99:8162,895,0 chrXII 791350 . C T 5478.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=34.8251;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-3.122e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:5478,583,0 chrXII 791497 . G T 6150.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=18.1582;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:6150,664,0 chrXII 792151 . T C 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=5.039;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.181;QD=24.34;ReadPosRankSum=1.681;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1664,177,0 chrXII 793555 . C T 4434.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0323;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=24.63;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4434,463,0 chrXII 793595 . T A 3691.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.0716;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=24.28;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3691,379,0 chrXII 793631 . A G 2315 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.44;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2348,255,0 chrXII 794003 . T G 2337 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=21.84;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2370,261,0 chrXII 794238 . T A 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;MQRankSum=0.275;QD=25.06;ReadPosRankSum=1.705;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3241,342,0 chrXII 794427 . T A 4390.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.45;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4390,454,0 chrXII 794880 . C T 2676 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2709,291,0 chrXII 795663 . A G 3224.03 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.80;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3257,354,0 chrXII 795720 . G C 3008 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.32;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3041,327,0 chrXII 796772 . G A 3728.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.45;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3728,402,0 chrXII 797171 . G A 3748.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.82;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3748,393,0 chrXII 800672 . T G 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=125;Dels=0.00;FS=3.962;HaplotypeScore=7.1947;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.483;QD=19.79;ReadPosRankSum=1.675;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,121:125:99:2507,273,0 chrXII 802043 . A G 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=162;Dels=0.00;FS=7.524;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.274;QD=22.44;ReadPosRankSum=2.373;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3635,408,0 chrXII 802287 . C T 3127 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.72;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3160,339,0 chrXII 803464 . T C 5631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=259;Dels=0.00;FS=11.226;HaplotypeScore=17.4332;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.283;QD=21.74;ReadPosRankSum=2.950;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:3,256:259:99:5631,612,0 chrXII 803833 . A G 6245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=24.0378;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.690;QD=19.10;ReadPosRankSum=1.711;SB=-3.564e+03 GT:AD:DP:GQ:PL 1/1:1,325:327:99:6245,717,0 chrXII 803986 . G A 7537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.930;DP=339;Dels=0.00;FS=3.574;HaplotypeScore=12.6601;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.385;QD=22.23;ReadPosRankSum=-0.334;SB=-4.085e+03 GT:AD:DP:GQ:PL 1/1:1,338:339:99:7537,773,0 chrXII 805282 . C A 3591.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.0355;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.26;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3591,384,0 chrXII 807225 . T G 2577 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.4328;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.08;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2610,279,0 chrXII 808209 . C T 3595.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.62;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3595,372,0 chrXII 808279 . T A 2252 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.65;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2285,237,0 chrXII 808452 . G A 2207 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.52;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2240,231,0 chrXII 808730 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.377;QD=23.26;ReadPosRankSum=1.707;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3266,351,0 chrXII 808837 . G A 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.5835;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.709;QD=23.01;ReadPosRankSum=-1.592;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3451,358,0 chrXII 809043 . A T 5014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.771;DP=199;Dels=0.00;FS=20.575;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.324;QD=25.20;ReadPosRankSum=3.771;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:5,194:199:99:5014,537,0 chrXII 809329 . C T 2593 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.42;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2626,282,0 chrXII 809989 . G A 6830.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.97;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:6830,709,0 chrXII 810333 . G C 4851.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.9245;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.56;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4851,525,0 chrXII 810422 . T C 4555.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.0091;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.78;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4555,498,0 chrXII 810702 . A G 4314.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=25.99;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4314,462,0 chrXII 810731 . A G 4078.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=0.379;QD=24.13;ReadPosRankSum=1.712;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4078,441,0 chrXII 810737 . A C 4090.01 SnpCluster AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=23.11;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4090,447,0 chrXII 810740 . G A 4153.01 SnpCluster AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=23.07;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4153,433,0 chrXII 810821 . A G 3905.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.67;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3905,420,0 chrXII 811301 . C T 3827.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3827,397,0 chrXII 812696 . C T 4226.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4226,445,0 chrXII 813374 . C T 4087.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.92;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4087,424,0 chrXII 814003 . A T 4338.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.2754;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.23;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4338,471,0 chrXII 814963 . C T 5992.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=28.4888;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.53;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,261:266:99:5992,625,0 chrXII 815561 . G T 3992.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=25.11;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3992,415,0 chrXII 815708 . G T 2768 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.07;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2801,291,0 chrXII 815755 . C T 1876 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=22.60;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1909,195,0 chrXII 815763 . C T 1888 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=21.95;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1921,198,0 chrXII 815784 . T G 1855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.227;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.887;QD=22.62;ReadPosRankSum=1.690;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1888,204,0 chrXII 816068 . A G 2489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.711;DP=115;Dels=0.00;FS=6.111;HaplotypeScore=8.2641;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=2.167;QD=21.64;ReadPosRankSum=2.922;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2522,270,0 chrXII 816749 . C T 3911.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.3240;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.85;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3911,406,0 chrXII 817231 . A G 3315.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3315,363,0 chrXII 817376 . T A 4281.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4281,445,0 chrXII 817463 . G A 3791.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3791,405,0 chrXII 817904 . C T 2946 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.18;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2979,318,0 chrXII 818015 . C A 3165 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.16;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3198,330,0 chrXII 818317 . C T 2492 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=24.43;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2525,267,0 chrXII 818446 . A T 1786 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=32.84;MQ0=0;QD=19.20;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1819,189,0 chrXII 818454 . A G 1614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.658;QD=17.35;ReadPosRankSum=1.695;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1647,180,0 chrXII 819024 . T A 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=140.2662;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;MQRankSum=-0.516;QD=18.49;ReadPosRankSum=-0.241;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2844,300,0 chrXII 819282 . T A 3899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=3.136;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=1.415;QD=22.03;ReadPosRankSum=1.653;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3899,420,0 chrXII 819289 . G A 4374.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.0365;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=23.02;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4374,454,0 chrXII 819563 . G A 2630 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=19.63;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2663,288,0 chrXII 819570 . T G 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=3.042;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-0.650;QD=18.58;ReadPosRankSum=2.343;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2615,291,0 chrXII 819681 . A G 4142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=3.873;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.226;QD=25.73;ReadPosRankSum=1.603;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:4142,438,0 chrXII 819713 . C T 4540.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.0147;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.94;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4540,478,0 chrXII 819771 . A T 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=4.635;HaplotypeScore=13.8593;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-1.158;QD=22.87;ReadPosRankSum=1.556;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3590,378,0 chrXII 819834 . C G 4867.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.4023;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.40;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4867,549,0 chrXII 820297 . G A 3937.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.01;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3937,435,0 chrXII 820361 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.8569;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.31;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3247,339,0 chrXII 820652 . A G 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=172;Dels=0.00;FS=7.497;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.990;QD=21.71;ReadPosRankSum=2.421;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:3734,396,0 chrXII 820732 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.0870;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.02;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3603,376,0 chrXII 821230 . G A 3074 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.63;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3107,336,0 chrXII 821269 . A G 3005 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=19.77;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3038,330,0 chrXII 821272 . A G 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=0.277;QD=19.41;ReadPosRankSum=1.640;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2944,321,0 chrXII 821638 . C A 2933 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.46;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2966,318,0 chrXII 821725 . A G 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=3.262;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.756;QD=24.29;ReadPosRankSum=1.708;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3473,375,0 chrXII 821815 . C T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.61;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3920,406,0 chrXII 821908 . A G 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.1367;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.310;QD=22.17;ReadPosRankSum=1.706;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3004,327,0 chrXII 822252 . G A 2932 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2965,309,0 chrXII 822430 . A G 3973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=4.033;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.385;QD=24.37;ReadPosRankSum=1.689;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3973,426,0 chrXII 822539 . A G 3603.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.55;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3603,387,0 chrXII 822768 . A C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=133;Dels=0.00;FS=3.031;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.619;QD=23.66;ReadPosRankSum=2.413;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3180,354,0 chrXII 822847 . G A 2495 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=18.90;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2528,273,0 chrXII 822848 . G A 2645 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=20.04;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2678,279,0 chrXII 825694 . A G 3330.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.35;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3330,363,0 chrXII 825715 . A G 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=1.302;QD=20.23;ReadPosRankSum=1.630;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3419,363,0 chrXII 826195 . G A 4140.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4140,427,0 chrXII 827259 . G A 6971.01 PASS AC=2;AF=1.00;AN=2;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.04;SB=-3.558e+03 GT:AD:DP:GQ:PL 1/1:0,290:290:99:6971,765,0 chrXII 828266 . T G 5735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=286;Dels=0.00;FS=10.812;HaplotypeScore=19.5529;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.152;QD=20.05;ReadPosRankSum=2.406;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:2,279:286:99:5735,633,0 chrXII 828622 . T G 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.334;DP=207;Dels=0.00;FS=14.057;HaplotypeScore=11.6172;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-1.378;QD=19.30;ReadPosRankSum=3.376;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:4,203:207:99:3996,447,0 chrXII 828844 . A G 5999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=251;Dels=0.00;FS=3.936;HaplotypeScore=17.9027;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=0.485;QD=23.90;ReadPosRankSum=1.718;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5999,652,0 chrXII 828903 . C T 6212.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=19.2734;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.53;SB=-2.571e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:6212,655,0 chrXII 829206 . G C 4854.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.8765;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=23.00;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:4854,537,0 chrXII 829360 . G A 3812.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.15;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:3812,394,0 chrXII 829413 . A G 216.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.841;DP=115;Dels=0.00;FS=0.803;HaplotypeScore=50.6345;MLEAC=1;MLEAF=0.500;MQ=34.31;MQ0=0;MQRankSum=-2.524;QD=1.88;ReadPosRankSum=-2.843;SB=-1.720e+02 GT:AD:DP:GQ:PL 0/1:85,29:115:53:246,0,53 chrXII 829415 . A G 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.202;DP=118;Dels=0.00;FS=7.579;HaplotypeScore=177.4663;MLEAC=1;MLEAF=0.500;MQ=34.86;MQ0=0;MQRankSum=-0.401;QD=0.22;ReadPosRankSum=-0.980;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,16:118:56:56,0,223 chrXII 829419 . A G 130.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.320;DP=117;Dels=0.00;FS=8.376;HaplotypeScore=65.8819;MLEAC=1;MLEAF=0.500;MQ=35.57;MQ0=0;MQRankSum=-3.356;QD=1.11;ReadPosRankSum=-2.184;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:96,21:117:69:160,0,69 chrXII 829421 . A G 53.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;DP=118;Dels=0.00;FS=8.500;HaplotypeScore=110.2635;MLEAC=1;MLEAF=0.500;MQ=34.86;MQ0=0;MQRankSum=-2.179;QD=0.45;ReadPosRankSum=6.788;SB=-5.380e+02 GT:AD:DP:GQ:PL 0/1:55,63:118:82:83,0,82 chrXII 829425 . A G 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.217;DP=122;Dels=0.00;FS=11.601;HaplotypeScore=79.8330;MLEAC=1;MLEAF=0.500;MQ=35.96;MQ0=0;MQRankSum=1.438;QD=0.23;ReadPosRankSum=-5.324;SB=-5.300e+02 GT:AD:DP:GQ:PL 0/1:64,58:122:58:58,0,108 chrXII 829427 . G A 38.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.554;DP=123;Dels=0.00;FS=11.561;HaplotypeScore=113.3404;MLEAC=1;MLEAF=0.500;MQ=36.53;MQ0=0;MQRankSum=0.615;QD=0.31;ReadPosRankSum=-4.672;SB=-5.420e+02 GT:AD:DP:GQ:PL 0/1:63,60:123:68:68,0,104 chrXII 829534 . G T 3747.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.87;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3747,391,0 chrXII 829636 . A G 6429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=263;Dels=0.00;FS=11.797;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=1.750;QD=24.44;ReadPosRankSum=2.384;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:2,261:263:99:6429,708,0 chrXII 830392 . C T 5024.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.0792;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=24.63;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5024,523,0 chrXII 830462 . T C 4009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=1.151;QD=24.01;ReadPosRankSum=1.711;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4009,438,0 chrXII 830534 . G A 3971.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=24.51;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3971,420,0 chrXII 830644 . T A 2598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.661;DP=137;Dels=0.00;FS=19.657;HaplotypeScore=7.2698;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=1.432;QD=18.96;ReadPosRankSum=4.062;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:7,130:137:99:2631,266,0 chrXII 830647 . G T 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.315;DP=136;Dels=0.02;FS=4.518;HaplotypeScore=4.5247;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=0.925;QD=19.46;ReadPosRankSum=1.680;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2679,288,0 chrXII 830721 . G A 2808 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=20.20;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2841,297,0 chrXII 830731 . A G 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=0.527;QD=17.05;ReadPosRankSum=1.682;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2386,270,0 chrXII 830741 . T A 2531 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=18.75;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2564,267,0 chrXII 830945 . C T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.1454;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=24.09;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3396,355,0 chrXII 831007 . T C 5168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.862;QD=24.49;ReadPosRankSum=1.699;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:1,210:211:99:5168,561,0 chrXII 831036 . A T 4833.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.6744;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=24.04;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4833,499,0 chrXII 831046 . G A 4540.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.52;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4540,466,0 chrXII 831096 . A G 2459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=125;Dels=0.00;FS=3.153;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.509;QD=19.67;ReadPosRankSum=1.704;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2492,273,0 chrXII 831136 . G A 2440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.880;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.1070;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.256;QD=19.68;ReadPosRankSum=-1.079;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2473,238,0 chrXII 831658 . C T 2661 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2694,297,0 chrXII 831805 . C T 4040.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.35;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4040,421,0 chrXII 832172 . G A 3672.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=23.69;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3672,387,0 chrXII 832198 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=4.360;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=-1.689;QD=21.29;ReadPosRankSum=1.689;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3428,366,0 chrXII 832234 . A T 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.08;MQ0=0;MQRankSum=-0.860;QD=16.47;ReadPosRankSum=1.710;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2586,279,0 chrXII 832249 . G T 2024 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.53;MQ0=0;QD=14.06;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2057,225,0 chrXII 832255 . A G 1931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=141;Dels=0.00;FS=2.992;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.26;MQ0=0;MQRankSum=-2.031;QD=13.70;ReadPosRankSum=2.415;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:1964,210,0 chrXII 832264 . G A 1782 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=0;QD=12.91;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:1815,195,0 chrXII 832282 . T C 2202 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.5054;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;QD=15.62;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2235,249,0 chrXII 832312 . G A 2860 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=18.94;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2893,312,0 chrXII 832387 . G T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.12;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3399,363,0 chrXII 832594 . T G 3734.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3734,414,0 chrXII 832633 . C T 3693.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.83;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3693,382,0 chrXII 833476 . C T 3802.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.61;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3802,391,0 chrXII 833500 . T C 2997 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.88;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3030,339,0 chrXII 833540 . A T 2952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=133;Dels=0.00;FS=3.109;HaplotypeScore=16.9885;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.247;QD=22.20;ReadPosRankSum=1.706;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2985,309,0 chrXII 833667 . A G 2694 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.03;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2727,291,0 chrXII 834053 . A G 2417 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.7914;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.80;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2450,276,0 chrXII 834108 . A G 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.029;QD=21.66;ReadPosRankSum=1.588;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2675,297,0 chrXII 834769 . C T 7165.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=7.8467;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=22.18;SB=-3.582e+03 GT:AD:DP:GQ:PL 1/1:0,321:323:99:7165,763,0 chrXII 834784 . G A 7305.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=21.2750;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.07;SB=-4.064e+03 GT:AD:DP:GQ:PL 1/1:0,329:331:99:7305,754,0 chrXII 835013 . A G 6652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=306;Dels=0.00;FS=2.519;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.897;QD=21.74;ReadPosRankSum=2.957;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:3,300:306:99:6652,721,0 chrXII 835197 . T C 3305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=149;Dels=0.00;FS=8.124;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-1.981;QD=22.18;ReadPosRankSum=2.399;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:2,145:149:99:3305,357,0 chrXII 835400 . G A 3060 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.3310;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=21.86;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3093,319,0 chrXII 835412 . C T 3180 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.9729;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=20.52;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3213,336,0 chrXII 835497 . A T 3641.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.34;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3641,393,0 chrXII 835509 . G A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.10;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3523,367,0 chrXII 835692 . G A 4834.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.4248;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.13;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4834,511,0 chrXII 835791 . T C 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.1969;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=1.207;QD=22.11;ReadPosRankSum=2.055;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3715,405,0 chrXII 836156 . G T 2174 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2207,228,0 chrXII 836998 . G A 5166.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.6149;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.20;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:5166,558,0 chrXII 837497 . G A 625 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=18.94;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:69:658,69,0 chrXII 837543 . G A 770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=43;Dels=0.00;FS=8.346;HaplotypeScore=5.7531;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=1.648;QD=17.91;ReadPosRankSum=1.648;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:1,40:43:87:803,87,0 chrXII 837595 . C T 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.8708;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.941;QD=24.90;ReadPosRankSum=1.506;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:1,91:94:99:2374,255,0 chrXII 839957 . G A 3947.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.98;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3947,412,0 chrXII 840073 . T C 2642 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=0;QD=16.94;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2675,288,0 chrXII 840076 . A T 2792 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;QD=17.02;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2825,285,0 chrXII 840102 . C G 2345 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.50;MQ0=0;QD=13.17;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:2378,258,0 chrXII 840110 . T C 2275 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=13.15;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2308,255,0 chrXII 840217 . T C 3499.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.7229;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.17;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3499,375,0 chrXII 840255 . G A 4583.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=25.89;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4583,478,0 chrXII 840577 . T C 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=151;Dels=0.00;FS=11.637;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.376;QD=20.08;ReadPosRankSum=2.873;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3065,339,0 chrXII 840682 . T C 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.362;QD=23.55;ReadPosRankSum=1.706;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3189,345,0 chrXII 842170 . A G 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=130;Dels=0.00;FS=3.018;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.106;QD=21.00;ReadPosRankSum=2.315;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:2,126:130:99:2763,297,0 chrXII 842770 . G A 2938 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2971,324,0 chrXII 843109 . T C 3885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.1208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.269;QD=21.46;ReadPosRankSum=1.694;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3885,429,0 chrXII 843389 . G A 4674.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.0421;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.54;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4674,493,0 chrXII 843400 . T C 4590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=237;Dels=0.00;FS=2.937;HaplotypeScore=12.5455;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=1.568;QD=19.37;ReadPosRankSum=2.397;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:2,232:236:99:4590,510,0 chrXII 844293 . T C 3871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=161;Dels=0.00;FS=2.576;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=1.006;QD=24.04;ReadPosRankSum=2.931;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:3,157:161:99:3871,423,0 chrXII 849357 . C T 2907 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.50;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2940,306,0 chrXII 849515 . T C 2497 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2530,276,0 chrXII 849651 . T C 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.171;DP=108;Dels=0.00;FS=6.229;HaplotypeScore=12.0382;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.708;QD=19.33;ReadPosRankSum=2.403;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2121,225,0 chrXII 851089 . A G 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=17.3860;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.186;QD=22.56;ReadPosRankSum=1.676;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4241,462,0 chrXII 852997 . C T 3591.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=26.40;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3591,372,0 chrXII 853613 . C T 2895 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.96;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2928,303,0 chrXII 854009 . G A 2885 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.71;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2918,300,0 chrXII 855154 . T C 4322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.339;QD=24.01;ReadPosRankSum=1.713;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4322,465,0 chrXII 855262 . C T 3988.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.56;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3988,415,0 chrXII 855358 . T C 4115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.6529;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.275;QD=20.89;ReadPosRankSum=-0.202;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4115,450,0 chrXII 855577 . G A 2527 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.18;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2560,264,0 chrXII 855875 . C A 3149 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3182,330,0 chrXII 856042 . T A 3660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.078;QD=23.31;ReadPosRankSum=1.598;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3660,382,0 chrXII 856193 . C T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.01;FS=0.000;HaplotypeScore=157.1493;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.87;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3477,372,0 chrXII 856280 . T C 4015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=164;Dels=0.00;FS=10.646;HaplotypeScore=10.0603;MLEAC=2;MLEAF=1.00;MQ=60.85;MQ0=0;MQRankSum=0.982;QD=24.48;ReadPosRankSum=2.908;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:4015,426,0 chrXII 856689 . A C 3193 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.49;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3226,348,0 chrXII 857263 . T C 3808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=165;Dels=0.00;FS=15.398;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.344;QD=23.08;ReadPosRankSum=2.957;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3808,420,0 chrXII 857630 . G C 3396.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.26;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3396,366,0 chrXII 857745 . G A 2872 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.26;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2905,303,0 chrXII 858427 . C T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.52;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3335,357,0 chrXII 858544 . G A 2680 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.00;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2713,300,0 chrXII 858557 . C A 2811 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9869;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=19.39;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2844,300,0 chrXII 859351 . G T 2712 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.5169;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2745,282,0 chrXII 860959 . G A 4683.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.6209;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.59;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4683,487,0 chrXII 861841 . T C 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=3.185;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.641;QD=25.31;ReadPosRankSum=1.678;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3247,348,0 chrXII 862412 . T C 3512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=151;Dels=0.00;FS=9.843;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.108;QD=23.26;ReadPosRankSum=2.886;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:3,147:151:99:3512,390,0 chrXII 862788 . G A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.6631;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.30;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3499,363,0 chrXII 863053 . C A 4156.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.45;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,166:170:99:4156,433,0 chrXII 863212 . T C 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.604;QD=22.74;ReadPosRankSum=1.677;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:1,189:192:99:4367,474,0 chrXII 863688 . C T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=96.1644;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.85;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3379,354,0 chrXII 864291 . A T 4693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=3.191;HaplotypeScore=12.7219;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.901;QD=23.94;ReadPosRankSum=1.661;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4693,495,0 chrXII 864999 . G T 4610.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=17.2871;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.26;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4610,490,0 chrXII 866286 . C A 2323 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=12.9633;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.12;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2356,258,0 chrXII 866496 . G T 3602.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3602,379,0 chrXII 866643 . A G 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.181;DP=151;Dels=0.00;FS=5.263;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.145;QD=21.91;ReadPosRankSum=3.366;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:4,147:151:99:3309,357,0 chrXII 866895 . C T 736 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.44;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,35:36:81:769,81,0 chrXII 867114 . T C 539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.863;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.9880;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=1.405;QD=14.18;ReadPosRankSum=0.686;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:2,36:38:44:572,44,0 chrXII 867118 . A T 709 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=17.72;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:81:742,81,0 chrXII 870213 . G A 3681.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.0367;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.39;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3681,399,0 chrXII 871504 . A G 5895.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.042;DP=294;Dels=0.00;FS=10.734;HaplotypeScore=24.8949;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.341;QD=20.05;ReadPosRankSum=4.066;SB=-2.934e+03 GT:AD:DP:GQ:PL 1/1:6,285:294:99:5895,663,0 chrXII 871694 . G A 7306.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=23.7792;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.64;SB=-3.266e+03 GT:AD:DP:GQ:PL 1/1:0,305:309:99:7306,781,0 chrXII 872180 . T C 6137.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=11.3042;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.33;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:6137,664,0 chrXII 872357 . A G 5252.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5252,576,0 chrXII 872737 . A G 3042 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=22.53;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3075,336,0 chrXII 872964 . T G 1954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=89;Dels=0.00;FS=3.832;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.493;QD=21.96;ReadPosRankSum=1.692;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,86:89:99:1987,216,0 chrXII 873300 . T C 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=140;Dels=0.00;FS=6.033;HaplotypeScore=14.2155;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.964;QD=22.86;ReadPosRankSum=2.790;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:3,136:140:99:3234,348,0 chrXII 874112 . G A 5265.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.61;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5265,550,0 chrXII 874247 . A G 5608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=260;Dels=0.00;FS=3.044;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.079;QD=21.57;ReadPosRankSum=1.679;SB=-3.267e+03 GT:AD:DP:GQ:PL 1/1:1,259:260:99:5608,601,0 chrXII 874259 . T A 6116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=269;Dels=0.00;FS=3.022;HaplotypeScore=13.1867;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=0.455;QD=22.74;ReadPosRankSum=2.422;SB=-3.635e+03 GT:AD:DP:GQ:PL 1/1:2,266:269:99:6116,634,0 chrXII 874356 . G A 5069.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=21.94;SB=-2.805e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5069,526,0 chrXII 874373 . G A 4496.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=19.72;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4496,475,0 chrXII 874379 . G A 4253.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=19.24;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4253,450,0 chrXII 874397 . G A 4335.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=18.69;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:4335,451,0 chrXII 874433 . C T 4362.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=10.3177;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=17.88;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:4362,462,0 chrXII 874541 . C T 5675.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=16.8292;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=23.74;SB=-2.727e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5675,612,0 chrXII 875066 . G C 2363 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.18;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2396,264,0 chrXII 875233 . C T 1139 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.64;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1172,123,0 chrXII 875418 . A C 775 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.40;MQ0=0;QD=16.15;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:87:808,87,0 chrXII 875426 . A G 847 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;QD=16.29;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:880,99,0 chrXII 875678 . G A 1976 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.40;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:2009,213,0 chrXII 876120 . G A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3373,354,0 chrXII 876714 . A G 4864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=237;Dels=0.00;FS=6.266;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-1.275;QD=20.52;ReadPosRankSum=2.387;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:2,232:237:99:4864,528,0 chrXII 876756 . G A 5112.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.61;SB=-3.202e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5112,535,0 chrXII 876759 . A G 4571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.270;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-0.472;QD=18.36;ReadPosRankSum=1.536;SB=-2.888e+03 GT:AD:DP:GQ:PL 1/1:3,246:249:99:4571,494,0 chrXII 876842 . G A 4850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.8874;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.077;QD=23.43;ReadPosRankSum=-1.442;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:1,204:207:99:4850,505,0 chrXII 877274 . T A 4042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=28.3820;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.289;QD=25.26;ReadPosRankSum=1.643;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:4042,415,0 chrXII 877539 . T A 4427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=3.081;HaplotypeScore=8.3730;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.534;QD=23.93;ReadPosRankSum=1.713;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4427,471,0 chrXII 877560 . T G 4339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.6304;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-1.335;QD=22.48;ReadPosRankSum=1.696;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4339,465,0 chrXII 877606 . C A 3690.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=16.70;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,217:221:99:3690,399,0 chrXII 877607 . T A 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;MQRankSum=0.359;QD=17.24;ReadPosRankSum=1.668;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:3811,402,0 chrXII 877723 . C A 6433.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=18.5966;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.37;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:0,262:264:99:6433,664,0 chrXII 877838 . G A 6945.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=22.55;SB=-3.839e+03 GT:AD:DP:GQ:PL 1/1:0,305:308:99:6945,718,0 chrXII 877839 . C A 6862.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=22.50;SB=-3.802e+03 GT:AD:DP:GQ:PL 1/1:0,302:305:99:6862,718,0 chrXII 877966 . G A 9526.01 filter AC=2;AF=1.00;AN=2;DP=418;Dels=0.00;FS=0.000;HaplotypeScore=18.8678;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.79;SB=-5.562e+03 GT:AD:DP:GQ:PL 1/1:0,418:418:99:9526,1015,0 chrXII 878238 . T C 7439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=309;Dels=0.00;FS=3.951;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.382;QD=24.07;ReadPosRankSum=1.710;SB=-3.304e+03 GT:AD:DP:GQ:PL 1/1:1,307:309:99:7439,808,0 chrXII 878274 . A G 7324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=317;Dels=0.00;FS=2.867;HaplotypeScore=19.8122;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.395;QD=23.10;ReadPosRankSum=2.403;SB=-3.245e+03 GT:AD:DP:GQ:PL 1/1:2,313:317:99:7324,804,0 chrXII 878842 . A G 4462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=201;Dels=0.00;FS=2.613;HaplotypeScore=12.9661;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.858;QD=22.20;ReadPosRankSum=2.400;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4462,475,0 chrXII 878875 . G A 3593.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.85;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3593,375,0 chrXII 878890 . C T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=20.17;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3509,366,0 chrXII 879328 . A G 4141.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.6101;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.60;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4141,459,0 chrXII 879756 . C T 3504.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.58;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3504,361,0 chrXII 880251 . C A 2894 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.17;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2927,309,0 chrXII 880276 . G C 3065 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=19.52;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3098,339,0 chrXII 880319 . C T 3651.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.86;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3651,390,0 chrXII 880569 . C T 2502 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=18.13;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2535,264,0 chrXII 880574 . T G 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=0.295;QD=17.65;ReadPosRankSum=1.629;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2416,267,0 chrXII 880916 . A T 3666.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.4002;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=21.44;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3666,396,0 chrXII 880934 . A G 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=161;Dels=0.00;FS=3.149;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=-0.142;QD=20.66;ReadPosRankSum=1.667;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3326,360,0 chrXII 880937 . C T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=21.85;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3431,355,0 chrXII 881079 . G A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.44;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3281,345,0 chrXII 881235 . A G 3958.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.54;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3958,426,0 chrXII 883237 . T C 3301.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=25.01;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3301,360,0 chrXII 883249 . G A 3186 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=22.28;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3219,339,0 chrXII 883273 . G T 3620.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.3343;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=21.81;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3620,384,0 chrXII 883429 . T C 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.816;QD=20.50;ReadPosRankSum=1.712;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3587,390,0 chrXII 883443 . C T 3798.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.8163;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.22;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3798,402,0 chrXII 883499 . A G 4305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=238;Dels=0.00;FS=3.029;HaplotypeScore=7.7272;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=1.020;QD=18.09;ReadPosRankSum=2.418;SB=-3.119e+03 GT:AD:DP:GQ:PL 1/1:2,235:238:99:4305,471,0 chrXII 883503 . T C 4273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=240;Dels=0.00;FS=3.029;HaplotypeScore=7.5201;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=-0.385;QD=17.80;ReadPosRankSum=2.429;SB=-3.149e+03 GT:AD:DP:GQ:PL 1/1:2,237:240:99:4273,471,0 chrXII 883794 . C T 4656.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.3055;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=25.30;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4656,484,0 chrXII 884120 . G A 2636 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.2444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2669,279,0 chrXII 885146 . G T 3671.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.64;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3671,390,0 chrXII 885190 . A T 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=135;Dels=0.00;FS=8.008;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-0.009;QD=22.64;ReadPosRankSum=2.377;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3089,330,0 chrXII 885216 . T C 2929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=130;Dels=0.00;FS=2.589;HaplotypeScore=6.7043;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=0.930;QD=22.53;ReadPosRankSum=2.915;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2962,318,0 chrXII 885268 . T C 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.8889;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=0.613;QD=20.35;ReadPosRankSum=1.690;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3338,354,0 chrXII 885303 . A G 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=4.228;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-1.597;QD=22.80;ReadPosRankSum=1.713;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4104,438,0 chrXII 885396 . C T 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=143;Dels=0.00;FS=3.617;HaplotypeScore=14.9048;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.456;QD=23.13;ReadPosRankSum=0.577;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3308,345,0 chrXII 885458 . C T 4472.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=24.30;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4472,466,0 chrXII 885745 . T C 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=146;Dels=0.00;FS=8.064;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.025;QD=23.03;ReadPosRankSum=2.416;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3363,357,0 chrXII 885989 . T C 3149 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.50;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3182,354,0 chrXII 886022 . G A 3182 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.06;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3215,333,0 chrXII 886838 . C T 3807.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.50;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3807,402,0 chrXII 886881 . G C 3025 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.74;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3058,330,0 chrXII 886936 . C T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.7577;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.02;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3776,405,0 chrXII 887067 . T C 3693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=156;Dels=0.00;FS=6.101;HaplotypeScore=12.6493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.240;QD=23.67;ReadPosRankSum=2.851;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:3,152:156:99:3693,414,0 chrXII 888653 . C T 2072 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2105,225,0 chrXII 889031 . G A 3656.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.5528;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3656,376,0 chrXII 891003 . T C 4539.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.16;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4539,492,0 chrXII 891452 . C T 5711.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5711,598,0 chrXII 891584 . G A 4458.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.9816;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.10;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4458,469,0 chrXII 892081 . C G 4564.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.02;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4564,498,0 chrXII 892173 . A G 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.720;DP=175;Dels=0.00;FS=23.113;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.322;QD=23.62;ReadPosRankSum=3.765;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:5,168:175:99:4133,459,0 chrXII 892436 . C T 4808.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=20.6344;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.47;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4808,508,0 chrXII 893024 . C T 4740.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.7014;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=24.43;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4740,493,0 chrXII 893043 . T C 4656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=212;Dels=0.00;FS=2.866;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-0.006;QD=21.96;ReadPosRankSum=2.403;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:2,207:212:99:4656,513,0 chrXII 893140 . T A 4794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=212;Dels=0.00;FS=3.031;HaplotypeScore=16.7401;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.216;QD=22.61;ReadPosRankSum=2.356;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4794,525,0 chrXII 893372 . C T 6003.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=22.9659;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.73;SB=-3.150e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:6003,625,0 chrXII 893548 . G A 5861.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=12.2486;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.92;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5861,610,0 chrXII 893651 . T C 6540.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=15.4396;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=24.04;SB=-3.459e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:6540,717,0 chrXII 893948 . T C 4144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=205;Dels=0.00;FS=4.420;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.789;QD=20.21;ReadPosRankSum=1.698;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,201:205:99:4144,468,0 chrXII 894230 . G T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3346,354,0 chrXII 894324 . T C 3004 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.11;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3037,330,0 chrXII 894362 . A G 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=126;Dels=0.00;FS=3.011;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.997;QD=23.44;ReadPosRankSum=2.410;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2987,324,0 chrXII 894745 . C A 3431.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3431,358,0 chrXII 895241 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3182,333,0 chrXII 895619 . T C 5197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.184;QD=22.89;ReadPosRankSum=1.717;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:5197,567,0 chrXII 895631 . T C 5872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=248;Dels=0.00;FS=3.027;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=1.282;QD=23.68;ReadPosRankSum=2.420;SB=-3.350e+03 GT:AD:DP:GQ:PL 1/1:2,246:248:99:5872,628,0 chrXII 895661 . T G 5588.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.58;SB=-3.116e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:5588,618,0 chrXII 895733 . C T 4853.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.56;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4853,511,0 chrXII 895997 . A G 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=157;Dels=0.00;FS=2.907;HaplotypeScore=13.6450;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.102;QD=22.86;ReadPosRankSum=2.418;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:3589,396,0 chrXII 896197 . A G 3491.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.6789;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.82;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3491,381,0 chrXII 896253 . G A 3202 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.2422;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.37;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3235,339,0 chrXII 896731 . A G 3845.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.333;DP=179;Dels=0.00;FS=8.603;HaplotypeScore=12.7393;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.313;QD=21.48;ReadPosRankSum=3.411;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:4,175:179:99:3845,423,0 chrXII 896824 . G A 2895 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.0015;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.16;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2928,306,0 chrXII 897145 . A G 2918 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.78;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2951,336,0 chrXII 897428 . G A 4486.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.4600;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.78;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4486,469,0 chrXII 897859 . C G 3170 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8772;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,141:145:99:3203,354,0 chrXII 898209 . G A 3862.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.5057;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.99;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3862,414,0 chrXII 898244 . C T 3549.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.9269;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.99;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3549,375,0 chrXII 898276 . G A 3840.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.43;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3840,397,0 chrXII 898915 . A G 3165 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=23.44;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3198,342,0 chrXII 898919 . T C 2986 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=22.45;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3019,321,0 chrXII 899119 . A G 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=118;Dels=0.00;FS=5.376;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;MQRankSum=-1.819;QD=19.00;ReadPosRankSum=2.940;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2275,246,0 chrXII 899148 . C T 1647 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.59;MQ0=0;QD=17.16;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1680,174,0 chrXII 899152 . A T 1364 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=66.5112;MLEAC=2;MLEAF=1.00;MQ=36.20;MQ0=0;MQRankSum=-1.327;QD=14.51;ReadPosRankSum=1.695;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1397,147,0 chrXII 899154 . T C 1273 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.106;HaplotypeScore=68.2117;MLEAC=2;MLEAF=1.00;MQ=35.51;MQ0=0;MQRankSum=-1.619;QD=13.84;ReadPosRankSum=1.694;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1306,144,0 chrXII 899462 . A C 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=154;Dels=0.00;FS=3.661;HaplotypeScore=14.2323;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.241;QD=23.95;ReadPosRankSum=1.709;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,150:154:99:3689,405,0 chrXII 899732 . T C 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=154;Dels=0.00;FS=4.386;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.310;QD=20.37;ReadPosRankSum=1.709;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,150:154:99:3170,345,0 chrXII 899812 . T C 2759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=3.680;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.275;QD=21.72;ReadPosRankSum=1.677;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2792,297,0 chrXII 900108 . A G 4285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=178;Dels=0.00;FS=3.847;HaplotypeScore=7.4934;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.302;QD=24.07;ReadPosRankSum=-1.302;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4285,454,0 chrXII 900280 . T C 3767.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.6289;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3767,423,0 chrXII 900710 . G A 4682.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.87;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4682,490,0 chrXII 900812 . C G 5181.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.8700;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.32;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5181,564,0 chrXII 900885 . A G 4525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.884;QD=23.57;ReadPosRankSum=1.696;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4525,495,0 chrXII 901023 . A G 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.333;DP=180;Dels=0.00;FS=8.249;HaplotypeScore=11.3132;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.005;QD=20.87;ReadPosRankSum=3.411;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:4,175:180:99:3757,426,0 chrXII 901089 . C T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=21.3724;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3623,381,0 chrXII 901179 . C T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=23.75;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4038,424,0 chrXII 901588 . G A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.63;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3379,369,0 chrXII 901782 . A G 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=3.036;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-1.589;QD=22.82;ReadPosRankSum=2.347;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2794,312,0 chrXII 901809 . G A 3055 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=24.06;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3088,321,0 chrXII 901826 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.73;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2771,300,0 chrXII 902387 . T C 3594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.023;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.5060;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.365;QD=22.75;ReadPosRankSum=1.967;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3594,373,0 chrXII 902761 . G A 4066.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.9757;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.23;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4066,418,0 chrXII 904696 . A G 2352 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.83;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2385,270,0 chrXII 904915 . G A 4314.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=15.4926;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4314,453,0 chrXII 905771 . A T 3410.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.03;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3410,354,0 chrXII 906118 . T C 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=3.077;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.682;QD=23.14;ReadPosRankSum=1.706;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3087,336,0 chrXII 907076 . A G 3322.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3322,360,0 chrXII 909328 . T A 3576.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.7338;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3576,373,0 chrXII 910292 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.70;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3366,366,0 chrXII 910497 . A G 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=173;Dels=0.00;FS=3.354;HaplotypeScore=18.9728;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.550;QD=22.35;ReadPosRankSum=1.671;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3867,429,0 chrXII 910661 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.14;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3269,357,0 chrXII 911387 . G T 4275.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.2999;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.85;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4275,445,0 chrXII 911501 . A G 3515.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.83;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3515,393,0 chrXII 911510 . T C 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.3826;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=0.802;QD=21.16;ReadPosRankSum=2.347;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3533,381,0 chrXII 911657 . G A 5869.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=20.9845;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.76;SB=-3.144e+03 GT:AD:DP:GQ:PL 1/1:0,244:247:99:5869,607,0 chrXII 913801 . G A 4530.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=18.19;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,245:249:99:4530,492,0 chrXII 914674 . C T 4191.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.51;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4191,439,0 chrXII 914832 . C A 2976 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=22.72;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3009,312,0 chrXII 914839 . A G 2817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=0.968;QD=20.41;ReadPosRankSum=1.656;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:2850,306,0 chrXII 915501 . C T 3459.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.2824;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.53;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3459,357,0 chrXII 916449 . C T 2621 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=12.7927;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.03;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2654,276,0 chrXII 918511 . T C 3281.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.94;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3281,351,0 chrXII 919261 . T G 1901 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1934,210,0 chrXII 920449 . T C 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=168;Dels=0.00;FS=6.869;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.817;QD=21.33;ReadPosRankSum=2.420;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3584,384,0 chrXII 921060 . T C 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=147;Dels=0.00;FS=6.992;HaplotypeScore=8.8163;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.343;QD=24.35;ReadPosRankSum=2.316;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3580,402,0 chrXII 921404 . A C 4296.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.8145;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.61;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4296,474,0 chrXII 921597 . T C 4320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=208;Dels=0.00;FS=3.116;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.477;QD=20.77;ReadPosRankSum=1.665;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4320,480,0 chrXII 921670 . A G 3464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.6063;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.941;QD=21.38;ReadPosRankSum=1.711;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3464,387,0 chrXII 922517 . A G 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=143;Dels=0.00;FS=3.368;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.283;QD=22.34;ReadPosRankSum=1.707;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,138:143:99:3228,351,0 chrXII 923392 . C T 3138 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3171,333,0 chrXII 923570 . G A 3011 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2506;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.62;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3044,333,0 chrXII 924245 . A C 3912.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.8005;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.15;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3912,435,0 chrXII 924335 . T A 4888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=220;Dels=0.00;FS=3.562;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.286;QD=22.22;ReadPosRankSum=1.716;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4888,505,0 chrXII 924464 . G A 3393.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.07;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3393,354,0 chrXII 924492 . T C 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=170;Dels=0.00;FS=16.748;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=0.588;QD=19.56;ReadPosRankSum=3.407;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:4,164:170:99:3325,360,0 chrXII 924502 . A T 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-0.514;QD=20.65;ReadPosRankSum=1.713;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3758,396,0 chrXII 924556 . T C 4127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=0.117;QD=21.16;ReadPosRankSum=1.678;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4127,453,0 chrXII 924692 . G A 4370.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=18.1030;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.64;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4370,462,0 chrXII 925665 . T C 2367 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2400,261,0 chrXII 925788 . T C 3737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=166;Dels=0.00;FS=2.995;HaplotypeScore=13.5521;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.112;QD=22.51;ReadPosRankSum=2.360;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:3737,414,0 chrXII 925971 . A G 3979.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.7407;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.41;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3979,432,0 chrXII 926010 . C A 4614.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.19;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4614,481,0 chrXII 926623 . C T 4096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.018;DP=189;Dels=0.00;FS=3.248;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.216;QD=21.67;ReadPosRankSum=0.553;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4096,423,0 chrXII 927711 . C G 2554 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2587,282,0 chrXII 928179 . C A 1580 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1613,171,0 chrXII 928259 . A C 2080 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.64;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2113,222,0 chrXII 928282 . T A 2097 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.18;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2130,231,0 chrXII 929360 . G A 3428.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1360;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.48;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3428,357,0 chrXII 929744 . T G 3488.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.0113;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=25.84;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3488,387,0 chrXII 929781 . T C 3688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.6095;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.716;QD=24.42;ReadPosRankSum=1.709;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3688,399,0 chrXII 929849 . G A 3427.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3427,372,0 chrXII 929932 . G A 4427.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.2433;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.81;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4427,460,0 chrXII 929950 . C T 4120.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.5769;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.20;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4120,430,0 chrXII 929953 . T C 4104.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.5221;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=20.42;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4104,444,0 chrXII 929995 . C A 4165.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.5633;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=20.32;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4165,436,0 chrXII 930163 . C T 5745.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=17.5517;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=24.87;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5745,598,0 chrXII 930472 . A C 6882.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=13.8218;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.34;SB=-3.784e+03 GT:AD:DP:GQ:PL 1/1:0,307:308:99:6882,756,0 chrXII 930490 . T C 6286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=279;Dels=0.00;FS=3.137;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.922;QD=22.53;ReadPosRankSum=1.695;SB=-3.666e+03 GT:AD:DP:GQ:PL 1/1:1,277:279:99:6286,679,0 chrXII 930532 . T C 5881.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=20.6494;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.62;SB=-3.142e+03 GT:AD:DP:GQ:PL 1/1:0,268:272:99:5881,660,0 chrXII 930589 . A G 5341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=234;Dels=0.00;FS=2.557;HaplotypeScore=12.5985;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.884;QD=22.82;ReadPosRankSum=2.884;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:3,231:234:99:5341,571,0 chrXII 930668 . G A 4645.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.1663;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.23;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4645,484,0 chrXII 930728 . A G 3878.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.0180;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.42;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3878,417,0 chrXII 930773 . A G 3487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.7750;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.315;QD=22.50;ReadPosRankSum=1.710;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3487,381,0 chrXII 930794 . C T 3171 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=23.49;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3204,336,0 chrXII 931449 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.1190;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.67;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3230,351,0 chrXII 931517 . A G 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.283;DP=114;Dels=0.00;FS=14.513;HaplotypeScore=11.0465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.055;QD=22.53;ReadPosRankSum=2.223;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:4,107:114:99:2601,291,0 chrXII 931804 . C T 6263.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=12.4346;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=25.67;SB=-2.907e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:6263,661,0 chrXII 931834 . C T 5585.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=19.19;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:0,289:291:99:5585,589,0 chrXII 931835 . A G 5410.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=18.72;SB=-2.839e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:5410,591,0 chrXII 932053 . A G 7161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=327;Dels=0.00;FS=2.563;HaplotypeScore=17.6918;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;MQRankSum=-1.746;QD=21.90;ReadPosRankSum=2.923;SB=-2.983e+03 GT:AD:DP:GQ:PL 1/1:3,322:327:99:7161,784,0 chrXII 932256 . A T 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.29;MQ0=0;MQRankSum=-1.249;QD=17.77;ReadPosRankSum=1.672;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3090,321,0 chrXII 932439 . A G 3571.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=24.29;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3571,381,0 chrXII 932662 . T C 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=130;Dels=0.02;FS=4.170;HaplotypeScore=17.5458;MLEAC=2;MLEAF=1.00;MQ=60.66;MQ0=0;MQRankSum=-1.056;QD=19.72;ReadPosRankSum=1.678;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2596,288,0 chrXII 933245 . T C 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=186;Dels=0.00;FS=7.157;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.834;QD=22.31;ReadPosRankSum=2.410;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:2,182:186:99:4149,468,0 chrXII 933272 . G A 4814.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.98;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4814,522,0 chrXII 933342 . G A 4741.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=18.7642;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.68;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4741,496,0 chrXII 933572 . T C 4236.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.2068;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.80;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4236,450,0 chrXII 933617 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.7895;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.22;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3877,406,0 chrXII 933702 . C T 2421 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.9813;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.05;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2454,255,0 chrXII 933722 . A C 2619 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2770;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.82;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2652,285,0 chrXII 933908 . C T 2047 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=24.08;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2080,216,0 chrXII 933932 . G T 2240 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=24.62;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2273,237,0 chrXII 934140 . T C 2260 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.60;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2293,249,0 chrXII 934221 . C T 1746 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.62;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1779,186,0 chrXII 934224 . G A 1692 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=19.91;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1725,180,0 chrXII 934434 . C T 3584.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.9569;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=26.35;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3584,370,0 chrXII 934515 . A T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.32;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3770,391,0 chrXII 934633 . C A 3703.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0924;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.72;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3703,388,0 chrXII 934750 . C T 3358.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.7775;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.16;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3358,351,0 chrXII 935020 . A G 3953.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.98;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3953,441,0 chrXII 935143 . A G 5447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=251;Dels=0.00;FS=4.567;HaplotypeScore=23.9756;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.355;QD=21.70;ReadPosRankSum=1.718;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:1,248:251:99:5447,618,0 chrXII 935183 . C T 6440.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=14.8677;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.12;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:6440,673,0 chrXII 935263 . T C 5747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.268;DP=262;Dels=0.00;FS=4.671;HaplotypeScore=12.5572;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.535;QD=21.94;ReadPosRankSum=2.370;SB=-3.220e+03 GT:AD:DP:GQ:PL 1/1:4,258:262:99:5747,596,0 chrXII 935293 . A G 5636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=9.0177;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.715;QD=22.37;ReadPosRankSum=1.705;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:1,251:252:99:5636,618,0 chrXII 935365 . G A 4814.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.5121;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.40;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:4814,519,0 chrXII 935485 . A G 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=178;Dels=0.00;FS=3.026;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-0.188;QD=23.72;ReadPosRankSum=2.422;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:4223,462,0 chrXII 935629 . G A 4058.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=24.30;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4058,421,0 chrXII 935644 . G A 4120.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.41;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4120,427,0 chrXII 935713 . A G 4859.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=24.54;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4859,531,0 chrXII 935740 . G A 4264.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=23.05;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4264,450,0 chrXII 935743 . T C 4036.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=22.93;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4036,438,0 chrXII 935848 . A G 3375.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.96;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3375,384,0 chrXII 935887 . T C 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=200;Dels=0.00;FS=6.973;HaplotypeScore=24.3944;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.011;QD=21.11;ReadPosRankSum=2.375;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:2,196:200:99:4221,453,0 chrXII 935974 . T C 4168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.6128;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=0.176;QD=22.17;ReadPosRankSum=1.714;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4168,450,0 chrXII 935991 . C T 4271.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.7625;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.02;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4271,445,0 chrXII 936082 . T C 5477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=236;Dels=0.00;FS=5.552;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=1.004;QD=23.21;ReadPosRankSum=1.528;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:3,231:236:99:5477,589,0 chrXII 936111 . A G 5562.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.61;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5562,598,0 chrXII 936217 . C T 5308.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.8531;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=24.69;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5308,550,0 chrXII 936336 . G T 3937.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.37;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3937,426,0 chrXII 936367 . G A 3858.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.96;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3858,414,0 chrXII 936517 . T C 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=125;Dels=0.00;FS=2.982;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=1.682;QD=23.38;ReadPosRankSum=2.391;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2956,321,0 chrXII 936531 . T A 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=132;Dels=0.00;FS=3.027;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.997;QD=23.52;ReadPosRankSum=2.301;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3137,327,0 chrXII 936598 . A G 3000 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.13;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3033,336,0 chrXII 936688 . G C 3301.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.41;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3301,360,0 chrXII 936724 . T C 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=164;Dels=0.00;FS=3.000;HaplotypeScore=12.7134;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.481;QD=23.49;ReadPosRankSum=2.419;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:2,159:164:99:3853,426,0 chrXII 937242 . A T 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.650;QD=22.62;ReadPosRankSum=1.678;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2973,309,0 chrXII 937397 . A T 1805 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.00;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1838,201,0 chrXII 937738 . A G 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=175;Dels=0.00;FS=11.140;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-1.052;QD=22.50;ReadPosRankSum=2.925;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:3938,426,0 chrXII 937750 . C A 3764.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=22.27;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3764,396,0 chrXII 937765 . T C 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=178;Dels=0.00;FS=3.210;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-0.253;QD=20.04;ReadPosRankSum=1.693;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3567,381,0 chrXII 937821 . C A 4889.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.0533;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.53;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4889,514,0 chrXII 937855 . A G 5738.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=14.1375;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=22.86;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5738,657,0 chrXII 937897 . A G 5394.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=3.1201;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=21.93;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5394,591,0 chrXII 937900 . T A 5499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=-1.399;QD=22.82;ReadPosRankSum=1.689;SB=-3.014e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5499,583,0 chrXII 937975 . G A 5286.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.5992;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=24.03;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,216:220:99:5286,559,0 chrXII 938121 . C T 3953.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.6240;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=20.81;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:3953,423,0 chrXII 938122 . A G 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.0467;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;MQRankSum=-1.400;QD=19.91;ReadPosRankSum=1.714;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3743,423,0 chrXII 938134 . A G 3740.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=20.55;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3740,411,0 chrXII 938137 . C T 3836.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=20.74;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3836,408,0 chrXII 938653 . C T 3074 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.2175;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=18.63;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:3107,336,0 chrXII 938663 . C T 2892 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=16.91;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2925,312,0 chrXII 938758 . T C 3044 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.89;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3077,336,0 chrXII 938791 . G A 3017 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.35;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3050,318,0 chrXII 938809 . T C 3348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=4.337;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=1.003;QD=21.74;ReadPosRankSum=1.664;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3348,360,0 chrXII 939682 . A G 2646 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.62;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2679,288,0 chrXII 939994 . C T 2728 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.93;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2761,294,0 chrXII 940048 . C T 2341 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.65;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2374,255,0 chrXII 940066 . G A 2094 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=20.73;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2127,222,0 chrXII 940102 . C T 2440 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.40;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2473,264,0 chrXII 940138 . A T 3062 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.11;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3095,324,0 chrXII 940624 . T G 3154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=3.815;HaplotypeScore=5.4159;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.705;QD=24.26;ReadPosRankSum=1.705;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3187,348,0 chrXII 940672 . A G 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.383;QD=24.01;ReadPosRankSum=1.706;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3202,345,0 chrXII 940786 . T C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=137;Dels=0.00;FS=3.034;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-0.425;QD=22.97;ReadPosRankSum=2.359;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3180,354,0 chrXII 940924 . A G 1463 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=17.84;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1496,165,0 chrXII 940926 . G T 1602 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=19.78;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1635,171,0 chrXII 941007 . T C 1584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=87;Dels=0.00;FS=4.873;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=0.201;QD=18.21;ReadPosRankSum=1.692;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1617,180,0 chrXII 941046 . A T 1012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.593;DP=83;Dels=0.04;FS=0.000;HaplotypeScore=6.6723;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-0.481;QD=12.19;ReadPosRankSum=0.883;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:4,76:80:73:1045,73,0 chrXII 941140 . G A 1719 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.37;MQ0=0;QD=24.91;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1752,189,0 chrXII 941365 . T C 842 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-6.137;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=10.43;MQ0=179;MQRankSum=5.965;QD=2.60;ReadPosRankSum=-3.278;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:148,176:324:93:875,93,0 chrXII 941517 . C A 3233.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.513;DP=998;DS;Dels=0.00;FS=0.716;HaplotypeScore=188.1360;MLEAC=1;MLEAF=0.500;MQ=21.44;MQ0=246;MQRankSum=10.603;QD=3.24;ReadPosRankSum=1.045;SB=-6.690e+02 GT:AD:DP:GQ:PL 0/1:693,243:998:99:3262,0,2331 chrXII 941644 . A G 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;DP=903;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=10.21;MQ0=782;MQRankSum=-0.131;QD=0.06;ReadPosRankSum=-0.384;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:828,75:903:82:82,0,1843 chrXII 947104 . T C 50.97 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.31;MQ0=59;QD=0.78;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:50,13:65:9:83,9,0 chrXII 947105 . T A 56.97 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.46;MQ0=57;QD=0.90;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:49,14:63:9:89,9,0 chrXII 947333 . T C 2861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=-1.646;QD=23.26;ReadPosRankSum=1.675;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2894,321,0 chrXII 947385 . G A 2878 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.2211;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=21.48;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2911,315,0 chrXII 947402 . C T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7922;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.64;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3381,351,0 chrXII 947519 . C T 3407.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.50;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3407,354,0 chrXII 947537 . A T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=24.38;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3389,351,0 chrXII 947678 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.01;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3185,333,0 chrXII 947954 . T C 2625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=4.887;HaplotypeScore=6.0793;MLEAC=2;MLEAF=1.00;MQ=60.75;MQ0=0;MQRankSum=1.216;QD=22.83;ReadPosRankSum=1.702;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2658,300,0 chrXII 948186 . C T 2713 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.22;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2746,285,0 chrXII 948224 . A T 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=3.365;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.815;QD=26.42;ReadPosRankSum=1.630;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2728,285,0 chrXII 948299 . G A 1989 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.86;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2022,219,0 chrXII 948319 . G T 2355 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.09;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2388,258,0 chrXII 948612 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=25.04;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3530,367,0 chrXII 948676 . T C 3362.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=23.03;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3362,366,0 chrXII 948698 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.721;DP=155;Dels=0.00;FS=17.153;HaplotypeScore=13.6797;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-1.570;QD=21.97;ReadPosRankSum=3.548;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:5,149:155:99:3406,363,0 chrXII 948733 . A G 3550.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.2715;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.61;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3550,384,0 chrXII 948776 . T A 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.8057;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.937;QD=23.52;ReadPosRankSum=1.712;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4046,435,0 chrXII 948914 . A G 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.201;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-1.456;QD=21.93;ReadPosRankSum=0.308;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3574,387,0 chrXII 948922 . A T 3912.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.8989;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=23.43;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3912,412,0 chrXII 948958 . T C 4043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=190;Dels=0.00;FS=7.609;HaplotypeScore=11.2265;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.552;QD=21.28;ReadPosRankSum=2.385;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:4043,447,0 chrXII 949030 . C T 4050.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.8882;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.75;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4050,427,0 chrXII 949229 . G A 4772.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.79;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4772,516,0 chrXII 949242 . G A 5242.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.4865;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.40;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,230:234:99:5242,547,0 chrXII 949429 . C T 4747.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=24.10;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4747,519,0 chrXII 949489 . C T 4731.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=23.77;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4731,493,0 chrXII 949843 . G A 3934.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3934,417,0 chrXII 950047 . C T 4999.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.1134;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.75;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4999,549,0 chrXII 950263 . C T 3006 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9545;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.78;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3039,324,0 chrXII 951540 . A G 5127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.393;DP=233;Dels=0.00;FS=8.342;HaplotypeScore=15.1956;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.108;QD=22.00;ReadPosRankSum=3.423;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:4,229:233:99:5127,555,0 chrXII 952052 . C T 5356.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=19.9340;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.57;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5356,573,0 chrXII 953059 . G T 2988 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.2935;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.81;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3021,312,0 chrXII 953476 . G A 4986.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.9962;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.44;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4986,517,0 chrXII 953884 . G T 4361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.1134;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.339;QD=24.23;ReadPosRankSum=-0.822;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4361,471,0 chrXII 954049 . G A 2984 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3017,324,0 chrXII 954537 . G A 3611.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=16.1796;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=18.52;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3611,390,0 chrXII 954585 . C T 5525.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=16.2560;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.19;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5525,597,0 chrXII 954714 . C T 5041.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.265;DP=217;Dels=0.00;FS=3.154;HaplotypeScore=12.4970;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=1.281;QD=23.23;ReadPosRankSum=1.652;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:5041,508,0 chrXII 954743 . A C 5249.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.7422;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.72;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5249,562,0 chrXII 955306 . T C 4328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=202;Dels=0.00;FS=3.032;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.277;QD=21.43;ReadPosRankSum=2.401;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4328,477,0 chrXII 956713 . A G 3474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=145;Dels=0.00;FS=6.423;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.862;QD=23.96;ReadPosRankSum=2.347;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3474,384,0 chrXII 957115 . C T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.37;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3656,379,0 chrXII 957702 . C T 2859 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.1280;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.24;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2892,303,0 chrXII 957940 . C T 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.341;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.7020;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.664;QD=21.72;ReadPosRankSum=1.185;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2944,300,0 chrXII 957978 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.21;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2787,294,0 chrXII 958253 . G A 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.811;QD=24.11;ReadPosRankSum=0.737;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2348,246,0 chrXII 958946 . A G 5184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=227;Dels=0.00;FS=2.599;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.481;QD=22.84;ReadPosRankSum=2.428;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:2,225:227:99:5184,564,0 chrXII 960749 . G A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.01;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3361,351,0 chrXII 961196 . A T 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.1668;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.483;QD=23.58;ReadPosRankSum=1.682;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3278,357,0 chrXII 961565 . A T 3043 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.77;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3076,321,0 chrXII 961667 . A G 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=147;Dels=0.00;FS=2.679;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;MQRankSum=-0.560;QD=21.26;ReadPosRankSum=2.349;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3158,351,0 chrXII 961676 . C T 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.8273;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;MQRankSum=-0.296;QD=19.65;ReadPosRankSum=0.068;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3020,315,0 chrXII 961679 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=18.77;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2943,324,0 chrXII 961688 . T C 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=5.174;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;MQRankSum=-0.899;QD=17.44;ReadPosRankSum=1.710;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2789,318,0 chrXII 961731 . A G 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=150;Dels=0.00;FS=2.520;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=-2.242;QD=17.07;ReadPosRankSum=2.940;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:2594,285,0 chrXII 961898 . A T 2003 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=24.13;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2036,213,0 chrXII 962123 . C T 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DP=105;Dels=0.00;FS=3.222;HaplotypeScore=6.4339;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.280;QD=24.07;ReadPosRankSum=-0.148;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2560,246,0 chrXII 962189 . G A 2800 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2833,294,0 chrXII 962683 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.87;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2229,231,0 chrXII 962714 . A G 1848 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=21.00;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1881,201,0 chrXII 962717 . T C 1781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=93;Dels=0.00;FS=4.122;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=0.391;QD=19.15;ReadPosRankSum=1.658;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1814,198,0 chrXII 962792 . G A 2087 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.44;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2120,219,0 chrXII 963090 . G A 3208 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.43;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3241,339,0 chrXII 963346 . G A 2687 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=22.58;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2720,282,0 chrXII 963347 . G A 2686 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=22.96;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2719,282,0 chrXII 963364 . C G 2138 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=18.75;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2171,231,0 chrXII 963375 . G T 2013 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=16.92;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2046,213,0 chrXII 963392 . A G 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=2.899;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;MQRankSum=-1.557;QD=15.29;ReadPosRankSum=2.319;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:1776,192,0 chrXII 963469 . A G 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.3664;MLEAC=2;MLEAF=1.00;MQ=61.22;MQ0=0;MQRankSum=-0.341;QD=24.03;ReadPosRankSum=1.675;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2989,321,0 chrXII 963714 . T C 4684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.014;QD=24.14;ReadPosRankSum=1.642;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4684,513,0 chrXII 964054 . A G 3328.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.27;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3328,360,0 chrXII 964078 . G A 3311.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.32;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3311,345,0 chrXII 964132 . C T 2519 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.49;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2552,264,0 chrXII 964450 . C T 2724 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=24.54;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2757,294,0 chrXII 964503 . A G 2740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.5429;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=0.627;QD=19.43;ReadPosRankSum=1.708;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2773,297,0 chrXII 964507 . T C 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.485;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=0.514;QD=19.88;ReadPosRankSum=1.613;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2915,315,0 chrXII 964591 . T G 3471.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.0861;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.94;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3471,375,0 chrXII 965342 . G A 2928 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2961,321,0 chrXII 965658 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.77;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3400,349,0 chrXII 966217 . C T 4687.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.3476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4687,496,0 chrXII 966393 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.72;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3392,375,0 chrXII 966805 . T C 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.910;QD=22.99;ReadPosRankSum=1.682;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3229,351,0 chrXII 966833 . G C 2494 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=19.95;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2527,276,0 chrXII 966841 . A G 2282 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.55;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2315,258,0 chrXII 966975 . T A 3367.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.94;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3367,348,0 chrXII 967075 . C G 2312 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.12;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2345,261,0 chrXII 967268 . A G 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-1.275;QD=21.02;ReadPosRankSum=1.656;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1946,216,0 chrXII 967302 . T C 1589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=82;Dels=0.00;FS=6.292;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.526;QD=19.38;ReadPosRankSum=2.390;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1622,177,0 chrXII 967311 . C T 1565 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=19.81;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1598,165,0 chrXII 967333 . C T 1943 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.05;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1976,204,0 chrXII 967387 . G A 2606 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.7047;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.72;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2639,276,0 chrXII 967945 . C G 2944 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.1929;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.82;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2977,327,0 chrXII 968009 . A C 2137 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.95;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2170,237,0 chrXII 968208 . C T 3349.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.81;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3349,351,0 chrXII 968395 . T C 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=145;Dels=0.00;FS=6.097;HaplotypeScore=6.2937;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.430;QD=23.71;ReadPosRankSum=2.909;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:3,141:145:99:3438,375,0 chrXII 968426 . A G 3747.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.72;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3747,405,0 chrXII 968497 . C T 3470.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3470,372,0 chrXII 968789 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.66;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3431,375,0 chrXII 969370 . C T 2752 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2785,300,0 chrXII 969880 . A G 2838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.335;QD=23.85;ReadPosRankSum=1.674;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2871,312,0 chrXII 971617 . G A 3518.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.61;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3518,369,0 chrXII 971812 . G A 3099 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.3567;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.13;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3132,327,0 chrXII 971844 . T A 2361 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.66;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2394,258,0 chrXII 972375 . C T 2772 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2805,291,0 chrXII 972787 . G A 4059.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.60;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4059,438,0 chrXII 972859 . C A 3780.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3780,394,0 chrXII 973206 . C G 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.255;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.0932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.330;QD=24.01;ReadPosRankSum=-0.703;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3338,340,0 chrXII 973725 . T A 5592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=232;Dels=0.00;FS=4.037;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.912;QD=24.10;ReadPosRankSum=1.702;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:5592,586,0 chrXII 973972 . T C 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=15.8544;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.752;QD=22.99;ReadPosRankSum=1.689;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3701,408,0 chrXII 974070 . T C 3571.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3571,390,0 chrXII 974129 . T C 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=130;Dels=0.00;FS=3.148;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.245;QD=21.93;ReadPosRankSum=1.651;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2884,321,0 chrXII 974513 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.8131;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.93;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2670,276,0 chrXII 974557 . A G 2272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=-0.033;QD=21.43;ReadPosRankSum=1.699;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2305,249,0 chrXII 974574 . A G 2101 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.3814;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=19.82;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2134,231,0 chrXII 974631 . G A 2542 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.54;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2575,267,0 chrXII 974775 . C T 1836 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.40;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1869,195,0 chrXII 974783 . C T 1767 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.29;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1800,183,0 chrXII 974945 . G A 2560 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.49;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2593,282,0 chrXII 975098 . C T 2366 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.14;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2399,261,0 chrXII 975434 . G T 2410 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=22.52;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2443,255,0 chrXII 975527 . A C 2444 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=23.73;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2477,267,0 chrXII 975595 . T C 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=3.259;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-1.059;QD=24.90;ReadPosRankSum=1.700;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2722,297,0 chrXII 975653 . T C 1545 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.46;MQ0=0;QD=16.09;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1578,171,0 chrXII 975664 . C T 1622 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.12;MQ0=0;QD=16.72;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1655,174,0 chrXII 975673 . T C 1483 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=92;Dels=0.00;FS=3.025;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.95;MQ0=0;MQRankSum=-0.361;QD=16.12;ReadPosRankSum=2.369;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1516,165,0 chrXII 975675 . G A 1549 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=0;QD=17.02;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1582,165,0 chrXII 975681 . G A 1482 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=0;QD=16.29;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1515,162,0 chrXII 975753 . G A 1762 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=19.58;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1795,192,0 chrXII 975763 . A G 1897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.153;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=-0.875;QD=20.40;ReadPosRankSum=1.695;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1930,210,0 chrXII 975766 . T C 1903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=98;Dels=0.00;FS=3.048;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=-0.565;QD=19.42;ReadPosRankSum=2.349;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1936,222,0 chrXII 975786 . T A 2208 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=20.64;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2241,246,0 chrXII 975878 . T A 1958 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=23.31;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1991,204,0 chrXII 975883 . A G 1883 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=23.84;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1916,204,0 chrXII 975964 . T G 1188 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=19.80;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1221,135,0 chrXII 975971 . A G 1080 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=19.29;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1113,126,0 chrXII 976087 . T C 463 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=17.81;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:54:496,54,0 chrXII 976210 . G A 690 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=0;QD=23.00;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:75:723,75,0 chrXII 976224 . A T 452 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.49;MQ0=0;QD=23.79;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:51:485,51,0 chrXII 981710 . G A 91.26 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;QD=1.98;SB=-6.527e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:15:124,15,0 chrXII 981725 . G A 308 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.86;MQ0=0;QD=5.13;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:42:341,42,0 chrXII 981730 . C T 400 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;QD=6.06;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:51:433,51,0 chrXII 981731 . G A 420 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=6.09;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:54:453,54,0 chrXII 981795 . A T 1765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=4.586;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;MQRankSum=1.544;QD=19.18;ReadPosRankSum=1.694;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1798,195,0 chrXII 981833 . C A 1206 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=58.7792;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=16.08;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1239,132,0 chrXII 981883 . G A 1644 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;QD=15.08;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1677,171,0 chrXII 981884 . C T 1636 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=14.48;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1669,171,0 chrXII 982208 . G T 2924 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8635;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=18.51;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:2957,309,0 chrXII 982219 . T A 2699 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=16.97;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2732,282,0 chrXII 982222 . A G 2593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=152;Dels=0.00;FS=2.964;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=-0.461;QD=17.06;ReadPosRankSum=2.353;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2626,291,0 chrXII 982306 . G A 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.808;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-1.383;QD=22.21;ReadPosRankSum=1.662;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3332,351,0 chrXII 982307 . A G 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.749;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=-0.271;QD=21.09;ReadPosRankSum=1.709;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3154,351,0 chrXII 982479 . A C 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=155;Dels=0.00;FS=3.095;HaplotypeScore=8.9468;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.413;QD=23.32;ReadPosRankSum=1.710;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3614,393,0 chrXII 982537 . A C 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.568;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.160;QD=23.24;ReadPosRankSum=1.708;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3300,354,0 chrXII 982562 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=23.43;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3265,339,0 chrXII 982870 . A T 2639 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.99;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2672,276,0 chrXII 982889 . T C 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=2.625;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-1.332;QD=19.02;ReadPosRankSum=2.381;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:2772,306,0 chrXII 982920 . T C 2476 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=6.6372;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.34;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2509,273,0 chrXII 982986 . C A 2915 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.6529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.59;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2948,309,0 chrXII 983190 . C T 3872.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.66;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3872,400,0 chrXII 983709 . A G 3158 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.2119;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3191,348,0 chrXII 984579 . T C 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=146;Dels=0.00;FS=3.073;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.435;QD=23.34;ReadPosRankSum=1.707;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,140:146:99:3407,369,0 chrXII 984639 . G A 3124 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3157,330,0 chrXII 984873 . A G 3713.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.6928;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.61;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3713,405,0 chrXII 985307 . A G 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=140;Dels=0.00;FS=6.925;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.709;QD=21.89;ReadPosRankSum=2.378;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:2,135:140:99:3098,336,0 chrXII 986217 . T C 2852 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2885,315,0 chrXII 986469 . T A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3256,339,0 chrXII 986803 . G A 4393.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.82;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4393,454,0 chrXII 986850 . C T 3758.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.25;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3758,394,0 chrXII 986998 . A G 5304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=218;Dels=0.00;FS=6.535;HaplotypeScore=14.9970;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.783;QD=24.33;ReadPosRankSum=2.382;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:5304,576,0 chrXII 987115 . A G 4716.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.8878;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.24;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4716,531,0 chrXII 987151 . G A 4546.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4546,469,0 chrXII 987293 . T C 5729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=234;Dels=0.00;FS=2.908;HaplotypeScore=10.6534;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.058;QD=24.48;ReadPosRankSum=2.418;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:2,231:234:99:5729,621,0 chrXII 987999 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.03;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3414,357,0 chrXII 989024 . G T 2732 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.51;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2765,300,0 chrXII 989078 . A G 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.0546;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.217;QD=21.21;ReadPosRankSum=1.660;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3109,342,0 chrXII 989108 . A G 2744 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.31;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2777,303,0 chrXII 989237 . C T 3934.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.86;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3934,420,0 chrXII 989251 . A T 3534.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.16;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3534,378,0 chrXII 989426 . C T 4903.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.8036;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.92;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4903,514,0 chrXII 989534 . C T 3048 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.09;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3081,333,0 chrXII 989610 . G A 3324.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.3839;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.73;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3324,348,0 chrXII 989666 . T C 4056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=17.8117;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.346;QD=23.05;ReadPosRankSum=1.712;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4056,438,0 chrXII 989828 . A G 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=155;Dels=0.00;FS=3.708;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-1.218;QD=19.63;ReadPosRankSum=1.687;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3076,351,0 chrXII 989831 . C T 3119 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.22;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3152,333,0 chrXII 989852 . C T 2665 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=19.74;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2698,282,0 chrXII 990434 . G A 4625.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.8997;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.24;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4625,498,0 chrXII 990468 . C T 4440.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.89;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,188:194:99:4440,463,0 chrXII 990531 . T C 3685.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.8686;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.75;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3685,402,0 chrXII 990547 . A G 3481.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.05;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3481,387,0 chrXII 990749 . G A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.35;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3651,373,0 chrXII 990848 . A G 4250.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.01;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4250,456,0 chrXII 990875 . C T 4480.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.5452;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.70;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4480,463,0 chrXII 990920 . G T 4503.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.21;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4503,472,0 chrXII 991059 . C T 4922.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=15.3409;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.78;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4922,528,0 chrXII 991373 . A G 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.118;QD=22.30;ReadPosRankSum=1.712;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3925,432,0 chrXII 991895 . T C 3853.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3853,423,0 chrXII 992332 . T C 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=149;Dels=0.00;FS=10.238;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=1.810;QD=14.96;ReadPosRankSum=2.953;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:2262,249,0 chrXII 992572 . G A 2963 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.9747;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.58;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2996,312,0 chrXII 992595 . T C 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=6.173;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=0.203;QD=19.70;ReadPosRankSum=1.684;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2889,315,0 chrXII 992601 . A C 2672 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=19.36;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2705,294,0 chrXII 992662 . C T 3057 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.16;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3090,321,0 chrXII 992819 . G A 2581 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.1190;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=24.58;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2614,270,0 chrXII 992940 . G T 2502 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.53;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2535,267,0 chrXII 992990 . A G 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=114;Dels=0.00;FS=2.899;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.054;QD=23.11;ReadPosRankSum=2.406;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2667,291,0 chrXII 993193 . G T 1987 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2020,207,0 chrXII 993389 . G T 1662 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1695,174,0 chrXII 993707 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=24.76;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2980,312,0 chrXII 993808 . G A 3440.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.0679;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.06;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3440,360,0 chrXII 994078 . C T 2756 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=21.04;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2789,300,0 chrXII 994177 . T C 2633 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.30;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2666,300,0 chrXII 994215 . G A 2172 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.87;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2205,228,0 chrXII 994239 . A G 1709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.382;QD=22.19;ReadPosRankSum=1.642;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1742,192,0 chrXII 994411 . A G 1867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.710;DP=82;Dels=0.00;FS=10.988;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.127;QD=22.77;ReadPosRankSum=2.912;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:3,77:82:99:1900,204,0 chrXII 994453 . T C 1896 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=25.62;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1929,210,0 chrXII 994520 . T C 2638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.503;QD=24.43;ReadPosRankSum=1.699;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2671,288,0 chrXII 994657 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=149;Dels=0.00;FS=2.658;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.025;QD=23.03;ReadPosRankSum=2.416;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:2,144:149:99:3431,381,0 chrXII 994820 . C T 4388.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.2045;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.98;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4388,457,0 chrXII 994873 . G A 4309.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.1530;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=22.10;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4309,451,0 chrXII 994876 . T A 4275.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=21.92;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4275,445,0 chrXII 994933 . A G 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.949;QD=18.90;ReadPosRankSum=1.693;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:3365,363,0 chrXII 994942 . G A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.4474;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=18.59;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3290,345,0 chrXII 995272 . T C 3205.99 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6681;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.57;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3239,351,0 chrXII 995326 . C T 3149 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.6520;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.86;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3182,333,0 chrXII 995599 . A G 2883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.320;DP=128;Dels=0.00;FS=9.160;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.332;QD=22.52;ReadPosRankSum=3.389;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:4,123:128:99:2916,315,0 chrXII 995857 . T C 2610 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2643,282,0 chrXII 996068 . T C 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.8804;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.326;QD=25.17;ReadPosRankSum=1.706;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3347,363,0 chrXII 996244 . G A 4273.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.8101;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.43;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4273,445,0 chrXII 996556 . A G 3970.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.7084;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3970,447,0 chrXII 996739 . A G 3859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.556;QD=23.25;ReadPosRankSum=1.690;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3859,423,0 chrXII 997285 . G A 4764.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.3363;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.61;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4764,493,0 chrXII 997480 . A G 3760.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.2538;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.93;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3760,405,0 chrXII 997535 . C T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.32;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3964,406,0 chrXII 997556 . T C 3571.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.26;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3571,387,0 chrXII 998338 . T C 3600.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.64;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3600,384,0 chrXII 998377 . A G 3322.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.15;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3322,372,0 chrXII 998725 . C T 3867.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.79;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3867,405,0 chrXII 998854 . T C 2701 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2734,300,0 chrXII 999870 . T A 5985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=17.8411;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.877;QD=25.80;ReadPosRankSum=1.717;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:1,231:232:99:5985,625,0 chrXII 1000003 . C T 4618.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.4533;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=23.93;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4618,487,0 chrXII 1000105 . A G 4008.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.44;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4008,441,0 chrXII 1000480 . C A 4058.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=24.45;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4058,424,0 chrXII 1000542 . C G 3837.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.98;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3837,417,0 chrXII 1000826 . A G 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=130;Dels=0.00;FS=6.468;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.258;QD=19.83;ReadPosRankSum=2.374;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2611,294,0 chrXII 1001139 . A G 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=146;Dels=0.00;FS=10.772;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.285;QD=23.07;ReadPosRankSum=2.938;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:3,142:146:99:3368,363,0 chrXII 1001228 . G A 5048.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.99;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:5048,526,0 chrXII 1001256 . T A 5796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=241;Dels=0.00;FS=2.721;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.005;QD=24.05;ReadPosRankSum=2.399;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:2,239:241:99:5796,595,0 chrXII 1001409 . T C 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=189;Dels=0.00;FS=7.787;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.555;QD=20.55;ReadPosRankSum=2.371;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:3883,432,0 chrXII 1001464 . T G 4857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=230;Dels=0.00;FS=8.887;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.817;QD=21.12;ReadPosRankSum=2.428;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:2,228:230:99:4857,537,0 chrXII 1001527 . T C 4542.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.82;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4542,495,0 chrXII 1001707 . T C 3619.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3619,402,0 chrXII 1001833 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3103,324,0 chrXII 1001891 . A G 2906 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2939,324,0 chrXII 1002079 . G T 1964 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.46;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1997,219,0 chrXII 1002130 . A G 2195 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.95;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2228,246,0 chrXII 1002243 . G C 1102 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=29.9550;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=13.44;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,74:82:99:1135,129,0 chrXII 1002952 . T C 4165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.406;QD=23.80;ReadPosRankSum=1.712;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4165,456,0 chrXII 1003093 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.0598;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-1.497;QD=20.12;ReadPosRankSum=1.689;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3280,363,0 chrXII 1003096 . T C 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.119;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.513;QD=19.51;ReadPosRankSum=1.668;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3194,348,0 chrXII 1003111 . C T 3350.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.4670;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.82;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3350,366,0 chrXII 1003348 . A G 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=164;Dels=0.00;FS=6.077;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-1.562;QD=22.30;ReadPosRankSum=2.945;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:3,160:164:99:3657,402,0 chrXII 1003591 . A G 94.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.244;DP=319;Dels=0.00;FS=213.838;HaplotypeScore=26.4549;MLEAC=1;MLEAF=0.500;MQ=47.00;MQ0=5;MQRankSum=-14.345;QD=0.29;ReadPosRankSum=-2.949;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:189,123:319:99:124,0,4385 chrXII 1003630 . T G 4209.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.272;DP=473;Dels=0.00;FS=408.480;HaplotypeScore=95.5822;MLEAC=1;MLEAF=0.500;MQ=41.83;MQ0=17;MQRankSum=13.759;QD=8.90;ReadPosRankSum=-3.390;SB=-2.042e+03 GT:AD:DP:GQ:PL 0/1:239,234:473:99:4209,0,2582 chrXII 1003640 . G A 1569.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.743;DP=477;Dels=0.00;FS=187.922;HaplotypeScore=101.9784;MLEAC=1;MLEAF=0.500;MQ=41.70;MQ0=18;MQRankSum=-7.727;QD=3.29;ReadPosRankSum=4.481;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:319,155:477:99:1599,0,5473 chrXII 1003643 . A G 2547.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.958;DP=469;Dels=0.00;FS=407.243;HaplotypeScore=93.8209;MLEAC=1;MLEAF=0.500;MQ=41.65;MQ0=17;MQRankSum=-13.036;QD=5.43;ReadPosRankSum=3.391;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:242,226:469:99:2577,0,4276 chrXII 1003861 . C G 329.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;DP=482;Dels=0.00;FS=6.536;HaplotypeScore=108.5098;MLEAC=1;MLEAF=0.500;MQ=42.02;MQ0=42;MQRankSum=-6.156;QD=0.68;ReadPosRankSum=-0.916;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:395,83:482:99:359,0,5751 chrXII 1003864 . C T 3964.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.215;DP=472;Dels=0.00;FS=54.389;HaplotypeScore=107.1871;MLEAC=1;MLEAF=0.500;MQ=42.21;MQ0=42;MQRankSum=11.795;QD=8.40;ReadPosRankSum=2.139;SB=-2.256e+03 GT:AD:DP:GQ:PL 0/1:238,229:472:99:3964,0,2083 chrXII 1003867 . T C 3751.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.527;DP=457;Dels=0.00;FS=57.202;HaplotypeScore=96.9917;MLEAC=1;MLEAF=0.500;MQ=42.86;MQ0=42;MQRankSum=11.569;QD=8.21;ReadPosRankSum=3.075;SB=-2.123e+03 GT:AD:DP:GQ:PL 0/1:221,230:457:99:3751,0,1762 chrXII 1003966 . C T 442.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.102;DP=186;Dels=0.00;FS=36.419;HaplotypeScore=8.9482;MLEAC=1;MLEAF=0.500;MQ=53.40;MQ0=0;MQRankSum=-9.948;QD=2.38;ReadPosRankSum=0.693;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:140,46:186:99:472,0,2405 chrXII 1003981 . T C 503.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.757;DP=172;Dels=0.00;FS=29.825;HaplotypeScore=10.5802;MLEAC=1;MLEAF=0.500;MQ=52.83;MQ0=0;MQRankSum=-10.027;QD=2.92;ReadPosRankSum=4.747;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:123,48:172:99:533,0,2223 chrXII 1003993 . T C 414.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.481;DP=162;Dels=0.00;FS=21.934;HaplotypeScore=8.7160;MLEAC=1;MLEAF=0.500;MQ=52.52;MQ0=0;MQRankSum=-9.698;QD=2.56;ReadPosRankSum=6.283;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,46:162:99:444,0,2061 chrXII 1003996 . T C 475.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.308;DP=157;Dels=0.00;FS=22.276;HaplotypeScore=5.6160;MLEAC=1;MLEAF=0.500;MQ=52.26;MQ0=0;MQRankSum=-9.777;QD=3.03;ReadPosRankSum=5.141;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,47:157:99:505,0,2041 chrXII 1003998 . A G 473.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.658;DP=158;Dels=0.00;FS=19.581;HaplotypeScore=4.0386;MLEAC=1;MLEAF=0.500;MQ=52.31;MQ0=0;MQRankSum=-9.714;QD=2.99;ReadPosRankSum=4.670;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:111,47:158:99:503,0,2037 chrXII 1003999 . C T 479.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.168;DP=158;Dels=0.00;FS=22.384;HaplotypeScore=4.0386;MLEAC=1;MLEAF=0.500;MQ=52.31;MQ0=0;MQRankSum=-9.879;QD=3.03;ReadPosRankSum=4.333;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,47:158:99:509,0,1913 chrXII 1004005 . C G 445.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.884;DP=178;Dels=0.00;FS=30.326;HaplotypeScore=7.9803;MLEAC=1;MLEAF=0.500;MQ=48.11;MQ0=3;MQRankSum=-10.941;QD=2.50;ReadPosRankSum=-1.721;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:104,74:178:99:475,0,1943 chrXII 1004010 . C G 484.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;DP=191;Dels=0.00;FS=27.328;HaplotypeScore=11.9237;MLEAC=1;MLEAF=0.500;MQ=47.43;MQ0=11;MQRankSum=-11.085;QD=2.53;ReadPosRankSum=-0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,82:191:99:514,0,1881 chrXII 1004023 . A G 454.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.911;DP=186;Dels=0.00;FS=19.639;HaplotypeScore=4.8101;MLEAC=1;MLEAF=0.500;MQ=45.12;MQ0=21;MQRankSum=-10.596;QD=2.44;ReadPosRankSum=-2.468;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,89:186:99:484,0,1707 chrXII 1004029 . C T 371.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.442;DP=184;Dels=0.00;FS=24.434;HaplotypeScore=4.8101;MLEAC=1;MLEAF=0.500;MQ=45.59;MQ0=21;MQRankSum=-10.434;QD=2.02;ReadPosRankSum=-1.051;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,84:184:99:401,0,1868 chrXII 1004035 . C G 143.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.239;DP=171;Dels=0.00;FS=23.485;HaplotypeScore=7.9648;MLEAC=1;MLEAF=0.500;MQ=45.79;MQ0=24;MQRankSum=-9.376;QD=0.84;ReadPosRankSum=0.068;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,74:171:99:173,0,1803 chrXII 1004176 . G A 787 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=17.49;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:820,90,0 chrXII 1004186 . A T 925 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=19.68;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:958,99,0 chrXII 1004257 . T C 1288 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.21;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1321,144,0 chrXII 1004687 . T C 4419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=187;Dels=0.00;FS=2.565;HaplotypeScore=12.7880;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.511;QD=23.63;ReadPosRankSum=2.877;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:4419,466,0 chrXII 1004752 . G A 3511.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.5539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.29;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3511,384,0 chrXII 1004854 . A G 4303.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.73;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4303,471,0 chrXII 1004857 . A G 4333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=202;Dels=0.00;FS=5.944;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.915;QD=21.45;ReadPosRankSum=2.945;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:3,198:202:99:4333,471,0 chrXII 1005004 . G A 4655.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.87;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4655,484,0 chrXII 1006048 . C G 199.01 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=54.6359;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=2.65;SB=-7.799e+01 GT:AD:DP:GQ:PL 1/1:0,11:75:27:232,27,0 chrXII 1006086 . A G 1240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=75;Dels=0.00;FS=2.600;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-0.773;QD=16.53;ReadPosRankSum=2.384;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1273,138,0 chrXII 1006150 . C T 2498 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.5018;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.92;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2531,273,0 chrXII 1006283 . A T 1847 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=22.25;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1880,195,0 chrXII 1006293 . C T 1876 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=20.17;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1909,207,0 chrXII 1006308 . G A 2301 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.03;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=20.01;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2334,252,0 chrXII 1006345 . A G 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=124;Dels=0.01;FS=8.850;HaplotypeScore=16.8726;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=-0.844;QD=17.94;ReadPosRankSum=2.307;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:2,119:123:99:2257,240,0 chrXII 1006428 . T C 4443.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.5691;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=26.29;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4443,483,0 chrXII 1006623 . C T 4137.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=23.78;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4137,433,0 chrXII 1006629 . A G 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=175;Dels=0.00;FS=2.729;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.512;QD=21.60;ReadPosRankSum=2.407;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3780,408,0 chrXII 1006710 . G A 3197 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.75;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3230,354,0 chrXII 1006767 . A T 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=135;Dels=0.00;FS=8.379;HaplotypeScore=10.7464;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.932;QD=23.33;ReadPosRankSum=2.413;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3182,330,0 chrXII 1006848 . C A 3531.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=23.23;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3531,366,0 chrXII 1006859 . T A 3292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.9089;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=-0.501;QD=21.66;ReadPosRankSum=1.709;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3292,342,0 chrXII 1006909 . C T 2575 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.81;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2608,270,0 chrXII 1006977 . A G 2975 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.71;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3008,321,0 chrXII 1007069 . A G 3087 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=22.53;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3120,333,0 chrXII 1007084 . G A 2919 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=23.17;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2952,303,0 chrXII 1007205 . T A 1432 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.0879;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.70;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1465,159,0 chrXII 1007289 . A G 2113 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=24.57;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2146,231,0 chrXII 1007690 . T G 2696 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.26;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2729,297,0 chrXII 1007696 . A G 2812 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.66;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2845,306,0 chrXII 1007730 . G C 2563 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=16.54;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2596,288,0 chrXII 1007751 . G A 2913 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.6414;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=17.65;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:2946,321,0 chrXII 1008048 . A G 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=3.310;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.531;QD=23.35;ReadPosRankSum=1.686;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3549,402,0 chrXII 1008152 . C T 4370.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.14;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4370,454,0 chrXII 1008420 . C A 2814 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.26;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2847,300,0 chrXII 1008438 . T C 2964 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.71;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2997,324,0 chrXII 1008693 . A G 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=137;Dels=0.00;FS=7.213;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=1.050;QD=20.89;ReadPosRankSum=2.414;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2895,318,0 chrXII 1008704 . G A 2710 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.9621;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=19.50;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2743,285,0 chrXII 1008723 . C T 3072 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.95;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3105,327,0 chrXII 1008786 . A G 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=186;Dels=0.00;FS=5.714;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=1.146;QD=21.32;ReadPosRankSum=2.962;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:3965,426,0 chrXII 1008837 . A G 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.267;DP=156;Dels=0.01;FS=9.068;HaplotypeScore=23.0467;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.051;QD=21.87;ReadPosRankSum=3.278;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:4,151:155:99:3412,369,0 chrXII 1008873 . A T 2720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-0.043;QD=22.11;ReadPosRankSum=1.646;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2753,288,0 chrXII 1008909 . G A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.27;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3276,342,0 chrXII 1009047 . T G 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=152;Dels=0.00;FS=3.027;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-0.073;QD=20.99;ReadPosRankSum=2.353;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3223,348,0 chrXII 1009056 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.5095;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.33;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3103,327,0 chrXII 1009176 . C T 5243.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.5802;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.70;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:5243,550,0 chrXII 1009478 . C T 3027 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.1363;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=25.22;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:3060,313,0 chrXII 1009506 . T A 2724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-1.131;QD=22.33;ReadPosRankSum=1.703;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2757,297,0 chrXII 1009536 . G A 2943 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.36;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2976,306,0 chrXII 1009581 . T G 2892 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.90;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2925,309,0 chrXII 1009608 . T C 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.696;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=1.022;QD=21.16;ReadPosRankSum=1.288;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2530,279,0 chrXII 1009623 . G C 2799 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.0024;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.70;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,124:129:99:2832,312,0 chrXII 1009697 . T C 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=137;Dels=0.00;FS=2.920;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.224;QD=21.77;ReadPosRankSum=2.414;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3015,339,0 chrXII 1009719 . G A 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=3.078;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.293;QD=22.92;ReadPosRankSum=-0.027;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3013,312,0 chrXII 1010019 . C T 3706.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.16;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3706,393,0 chrXII 1010335 . T C 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=148;Dels=0.00;FS=5.824;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.109;QD=25.28;ReadPosRankSum=2.953;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:3741,405,0 chrXII 1010715 . T C 5903.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=14.7568;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.00;SB=-3.229e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5903,645,0 chrXII 1011169 . T G 3839.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.59;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3839,441,0 chrXII 1011170 . C A 4259.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.62;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4259,445,0 chrXII 1011376 . T C 246 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.469;DP=119;Dels=0.00;FS=25.855;HaplotypeScore=99.2490;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=1.885;QD=2.07;ReadPosRankSum=-6.786;SB=3.00 GT:AD:DP:GQ:PL 1/1:92,25:119:36:279,36,0 chrXII 1011386 . T C 265 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=2.65;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:39:298,39,0 chrXII 1011520 . T G 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=4.000;HaplotypeScore=6.0879;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.257;QD=24.27;ReadPosRankSum=1.700;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2654,285,0 chrXII 1011621 . G A 2112 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.12;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2145,237,0 chrXII 1012215 . A G 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=5.441;HaplotypeScore=3.7997;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;MQRankSum=-0.861;QD=11.22;ReadPosRankSum=1.692;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:2019,237,0 chrXII 1012270 . G A 947 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=21.6422;MLEAC=2;MLEAF=1.00;MQ=36.71;MQ0=0;MQRankSum=-0.671;QD=5.44;ReadPosRankSum=-1.131;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,172:173:99:980,105,0 chrXII 1012271 . A G 913 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.692;DP=175;Dels=0.01;FS=0.000;HaplotypeScore=20.6475;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=0;MQRankSum=-1.035;QD=5.22;ReadPosRankSum=-1.115;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,173:174:99:946,105,0 chrXII 1012275 . A T 1038 SnpCluster AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.8391;MLEAC=2;MLEAF=1.00;MQ=36.23;MQ0=0;QD=5.55;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:1071,108,0 chrXII 1012924 . G A 7570.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=33.6642;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.58;SB=-3.960e+03 GT:AD:DP:GQ:PL 1/1:0,318:321:99:7570,799,0 chrXII 1013013 . T C 6694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=17.8215;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.401;QD=21.12;ReadPosRankSum=1.699;SB=-3.563e+03 GT:AD:DP:GQ:PL 1/1:1,316:317:99:6694,732,0 chrXII 1013133 . G A 7989.01 filter AC=2;AF=1.00;AN=2;DP=373;Dels=0.00;FS=0.000;HaplotypeScore=23.4800;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.42;SB=-4.753e+03 GT:AD:DP:GQ:PL 1/1:0,371:373:99:7989,850,0 chrXII 1013421 . T C 6375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=311;Dels=0.00;FS=3.930;HaplotypeScore=21.7944;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.566;QD=20.50;ReadPosRankSum=1.698;SB=-3.303e+03 GT:AD:DP:GQ:PL 1/1:1,308:311:99:6375,699,0 chrXII 1014332 . C T 3552.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.53;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3552,370,0 chrXII 1014655 . A G 3710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=5.593;HaplotypeScore=9.2426;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.338;QD=21.32;ReadPosRankSum=1.672;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3710,426,0 chrXII 1015009 . A G 4421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.3294;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.417;QD=23.64;ReadPosRankSum=1.714;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4421,483,0 chrXII 1015184 . T C 4192.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.9276;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.03;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4192,453,0 chrXII 1015222 . T C 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=3.544;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.365;QD=22.27;ReadPosRankSum=1.661;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3273,366,0 chrXII 1016099 . T C 4360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=191;Dels=0.00;FS=3.172;HaplotypeScore=11.3637;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.351;QD=22.83;ReadPosRankSum=1.714;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4360,477,0 chrXII 1016758 . T A 3127 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.87;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3160,324,0 chrXII 1016768 . A G 2818 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.37;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2851,318,0 chrXII 1016924 . A G 3788.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.97;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,154:158:99:3788,411,0 chrXII 1017081 . C T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.42;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3295,345,0 chrXII 1017251 . G C 2916 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.09;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2949,330,0 chrXII 1017596 . C A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.77;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3788,391,0 chrXII 1017718 . C T 3012 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3045,324,0 chrXII 1018132 . T A 2976 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3009,312,0 chrXII 1019009 . G A 2662 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.5815;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.65;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2695,273,0 chrXII 1019039 . G A 2454 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.83;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2487,264,0 chrXII 1019199 . A G 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=116;Dels=0.00;FS=3.163;HaplotypeScore=6.9087;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.284;QD=24.02;ReadPosRankSum=1.702;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2819,297,0 chrXII 1020991 . T G 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=3.155;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.051;QD=23.30;ReadPosRankSum=1.704;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2875,312,0 chrXII 1021389 . G A 3729.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.70;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3729,388,0 chrXII 1022477 . G T 4493.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.2620;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.53;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4493,469,0 chrXII 1022570 . T G 5887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=13.7894;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.568;QD=24.03;ReadPosRankSum=1.590;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:1,243:245:99:5887,648,0 chrXII 1022895 . T C 5401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.791;DP=232;Dels=0.00;FS=7.745;HaplotypeScore=16.4034;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.664;QD=23.28;ReadPosRankSum=1.121;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:2,229:232:99:5401,559,0 chrXII 1022933 . C T 6161.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=9.9622;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.74;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:6161,649,0 chrXII 1023320 . G A 4540.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=16.2258;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4540,472,0 chrXII 1023413 . C T 4068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.0264;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.379;QD=23.79;ReadPosRankSum=-0.646;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4068,421,0 chrXII 1023647 . T C 4759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.755;QD=20.25;ReadPosRankSum=1.643;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:1,234:235:99:4759,519,0 chrXII 1023820 . A G 4185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.716;DP=200;Dels=0.00;FS=4.889;HaplotypeScore=6.7546;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=-1.805;QD=20.93;ReadPosRankSum=3.811;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:5,194:200:99:4185,450,0 chrXII 1023823 . C A 4220.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=21.53;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4220,445,0 chrXII 1024016 . T C 1475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=80;Dels=0.04;FS=6.767;HaplotypeScore=5.3198;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=-1.003;QD=18.44;ReadPosRankSum=1.641;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1508,168,0 chrXII 1024017 . C T 1520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=0.090;QD=19.00;ReadPosRankSum=2.783;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:3,76:79:99:1553,165,0 chrXII 1024168 . G C 2260 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.30;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2293,249,0 chrXII 1024500 . T C 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.295;QD=24.84;ReadPosRankSum=1.709;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3651,390,0 chrXII 1024601 . G A 4022.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.98;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4022,426,0 chrXII 1024747 . A G 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.796;QD=24.72;ReadPosRankSum=1.685;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3658,396,0 chrXII 1025001 . G T 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;DP=55;Dels=0.00;FS=69.569;HaplotypeScore=30.4365;MLEAC=1;MLEAF=0.500;MQ=53.21;MQ0=0;MQRankSum=-0.892;QD=0.84;ReadPosRankSum=2.174;SB=0.406 GT:AD:DP:GQ:PL 0/1:34,21:55:76:76,0,86 chrXII 1025152 . C T 1937 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.26;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1970,213,0 chrXII 1025593 . A T 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=147;Dels=0.00;FS=3.832;HaplotypeScore=8.9516;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.490;QD=24.14;ReadPosRankSum=0.346;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3549,375,0 chrXII 1025673 . T G 4017.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.7829;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=24.35;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4017,429,0 chrXII 1025702 . C T 3762.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.9297;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.08;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3762,408,0 chrXII 1025733 . C G 2993 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.69;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3026,336,0 chrXII 1025753 . T C 3180 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.06;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3213,351,0 chrXII 1025801 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.51;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3291,366,0 chrXII 1025817 . C T 3567.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.88;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3567,367,0 chrXII 1026134 . G A 2940 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.10;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2973,318,0 chrXII 1026208 . G C 2731 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.34;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2764,300,0 chrXII 1026243 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=22.11;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2952,303,0 chrXII 1026263 . A G 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.677;QD=19.93;ReadPosRankSum=1.678;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2604,279,0 chrXII 1026338 . C T 2789 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=24.68;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2822,288,0 chrXII 1027477 . C T 4572.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=4.3002;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.41;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4572,492,0 chrXII 1027483 . A G 4402.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.65;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4402,483,0 chrXII 1027959 . T G 5048.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=22.04;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5048,541,0 chrXII 1028032 . C T 4449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.468;DP=187;Dels=0.00;FS=3.303;HaplotypeScore=16.8433;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.075;QD=23.79;ReadPosRankSum=0.320;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4449,443,0 chrXII 1028133 . G A 3998.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0656;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.96;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3998,415,0 chrXII 1028229 . A G 2604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=0.935;QD=20.50;ReadPosRankSum=1.705;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2637,285,0 chrXII 1028370 . A G 2797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=127;Dels=0.01;FS=6.196;HaplotypeScore=14.2193;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.966;QD=22.02;ReadPosRankSum=2.411;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2830,303,0 chrXII 1028437 . C T 266 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=123.1801;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=1.79;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:33:299,33,0 chrXII 1028617 . G A 4576.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.1134;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.88;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:0,195:200:99:4576,487,0 chrXII 1028669 . C T 5234.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=18.9297;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=22.37;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5234,553,0 chrXII 1028735 . G A 5100.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=9.8048;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=22.08;SB=-2.826e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5100,532,0 chrXII 1028748 . G C 4878.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=10.9014;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.94;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:4878,540,0 chrXII 1028887 . A G 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-0.967;QD=21.80;ReadPosRankSum=1.711;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3554,393,0 chrXII 1028892 . G A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.02;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.41;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3409,366,0 chrXII 1028958 . C T 3568.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.1754;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=21.49;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3568,384,0 chrXII 1028984 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.18;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3262,366,0 chrXII 1029771 . T C 1694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=9.463;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.276;QD=15.54;ReadPosRankSum=2.269;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:1727,192,0 chrXII 1030090 . C T 3730.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.90;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3730,388,0 chrXII 1030118 . G A 2908 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.64;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2941,303,0 chrXII 1030386 . G A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=23.19;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3257,354,0 chrXII 1030519 . T C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=3.542;HaplotypeScore=8.4011;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.913;QD=19.48;ReadPosRankSum=1.648;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3248,354,0 chrXII 1030577 . T C 2456 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=19.34;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2489,267,0 chrXII 1030580 . G A 2600 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;QD=20.80;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2633,276,0 chrXII 1030604 . T G 1924 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=3.245;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;MQRankSum=0.851;QD=16.88;ReadPosRankSum=1.641;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1957,216,0 chrXII 1030608 . C T 1986 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.10;MQ0=0;QD=17.58;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2019,210,0 chrXII 1030614 . A G 1892 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.57;MQ0=0;MQRankSum=0.548;QD=16.03;ReadPosRankSum=1.673;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:1925,210,0 chrXII 1030625 . C T 1970 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;QD=17.75;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2003,216,0 chrXII 1030721 . G A 3857.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=26.60;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3857,400,0 chrXII 1030810 . G A 3570.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=14.8892;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=24.97;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3570,375,0 chrXII 1031026 . G C 5325.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.32;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5325,591,0 chrXII 1031337 . C T 5822.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=19.7669;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.83;SB=-2.949e+03 GT:AD:DP:GQ:PL 1/1:0,251:255:99:5822,613,0 chrXII 1031430 . G A 3295.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.860;DP=276;Dels=0.00;FS=0.923;HaplotypeScore=45.1989;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;MQRankSum=2.157;QD=11.94;ReadPosRankSum=-3.015;SB=-3.060e+03 GT:AD:DP:GQ:PL 1/1:18,258:276:99:3295,270,0 chrXII 1031433 . C A 1081.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=10.015;DP=278;Dels=0.00;FS=18.671;HaplotypeScore=43.6215;MLEAC=1;MLEAF=0.500;MQ=44.48;MQ0=0;MQRankSum=-3.473;QD=3.89;ReadPosRankSum=-10.100;SB=-5.460e+02 GT:AD:DP:GQ:PL 0/1:189,88:278:99:1111,0,1567 chrXII 1031436 . T A 936.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.816;DP=274;Dels=0.00;FS=16.455;HaplotypeScore=42.0442;MLEAC=1;MLEAF=0.500;MQ=44.84;MQ0=0;MQRankSum=-5.140;QD=3.42;ReadPosRankSum=-10.749;SB=-5.340e+02 GT:AD:DP:GQ:PL 0/1:194,79:274:99:966,0,1843 chrXII 1031439 . G A 668.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.623;DP=279;Dels=0.00;FS=11.309;HaplotypeScore=28.1251;MLEAC=1;MLEAF=0.500;MQ=45.16;MQ0=0;MQRankSum=-5.801;QD=2.39;ReadPosRankSum=-11.449;SB=-4.110e+02 GT:AD:DP:GQ:PL 0/1:204,73:279:99:698,0,2027 chrXII 1031571 . G A 4927.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=19.5751;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.09;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4927,517,0 chrXII 1032241 . G A 2020 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:2053,213,0 chrXII 1032807 . A G 4135.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=0.250;QD=19.23;ReadPosRankSum=1.716;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4135,456,0 chrXII 1032821 . A C 4465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=230;Dels=0.00;FS=2.755;HaplotypeScore=9.4376;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=-0.673;QD=19.41;ReadPosRankSum=2.428;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:2,226:230:99:4465,492,0 chrXII 1032857 . C T 4113.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.4594;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.13;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4113,430,0 chrXII 1032869 . T C 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=198;Dels=0.00;FS=3.189;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=0.787;QD=17.39;ReadPosRankSum=1.645;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:3444,384,0 chrXII 1033361 . G C 3340.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.19;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3340,369,0 chrXII 1033418 . T C 3695.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3695,408,0 chrXII 1033763 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.4326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3100,327,0 chrXII 1033895 . C T 3675.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.11;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3675,396,0 chrXII 1034027 . G A 3657.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3657,381,0 chrXII 1034073 . G A 3728.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.5047;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.37;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3728,399,0 chrXII 1034264 . G A 3733.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.93;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3733,390,0 chrXII 1034877 . A G 5101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.067;QD=24.88;ReadPosRankSum=1.715;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:5101,550,0 chrXII 1036112 . T C 3971.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.877;QD=24.21;ReadPosRankSum=1.711;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3971,426,0 chrXII 1036568 . G A 2877 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.4406;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.59;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2910,303,0 chrXII 1036903 . T G 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=162;Dels=0.00;FS=6.102;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.068;QD=23.13;ReadPosRankSum=2.358;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3747,414,0 chrXII 1037268 . A T 3613.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.18;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3613,381,0 chrXII 1037313 . A G 3387.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.72;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3387,369,0 chrXII 1037554 . A G 3520.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3520,384,0 chrXII 1037709 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0882;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.50;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3454,372,0 chrXII 1038171 . A T 3621.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=22.92;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3621,381,0 chrXII 1038188 . G C 3313.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.71;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3313,360,0 chrXII 1038210 . G A 3026 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=19.03;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3059,327,0 chrXII 1038631 . A G 4410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.7565;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.152;QD=21.72;ReadPosRankSum=1.715;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4410,486,0 chrXII 1038948 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.83;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3313,366,0 chrXII 1039153 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.5509;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.69;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3137,324,0 chrXII 1039201 . A T 2608 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.1583;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.70;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2641,276,0 chrXII 1039435 . T A 2672 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.65;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2705,282,0 chrXII 1039504 . T C 3567.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=160;Dels=0.00;FS=3.093;HaplotypeScore=7.8103;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.490;QD=22.29;ReadPosRankSum=1.667;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3567,393,0 chrXII 1040029 . A G 2802 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.95;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2835,306,0 chrXII 1040062 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.88;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3341,343,0 chrXII 1040071 . A G 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=3.813;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-1.305;QD=20.30;ReadPosRankSum=1.710;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3179,342,0 chrXII 1040218 . G A 3430.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.5600;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.98;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3430,355,0 chrXII 1040254 . G A 3603.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.18;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3603,393,0 chrXII 1040317 . C T 3370.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=19.9585;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.62;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3370,351,0 chrXII 1040530 . C T 4440.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.13;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4440,471,0 chrXII 1040785 . G A 4430.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.31;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4430,457,0 chrXII 1041385 . A T 3642.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.95;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3642,376,0 chrXII 1041713 . A G 2697 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.4530;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.66;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2730,294,0 chrXII 1041774 . A G 2283 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.30;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2316,252,0 chrXII 1042075 . C A 3069 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.90;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3102,321,0 chrXII 1042079 . C T 2937 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.95;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2970,309,0 chrXII 1042132 . A G 2405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=3.493;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.003;QD=21.10;ReadPosRankSum=1.641;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2438,261,0 chrXII 1042381 . T C 3654.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.13;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3654,393,0 chrXII 1042463 . A G 3999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=168;Dels=0.00;FS=7.222;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.611;QD=23.80;ReadPosRankSum=2.391;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3999,435,0 chrXII 1043079 . C T 3943.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3943,409,0 chrXII 1043294 . A G 2570 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.58;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2603,282,0 chrXII 1043638 . T C 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.055;QD=23.28;ReadPosRankSum=2.405;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2617,282,0 chrXII 1043699 . G A 3288.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.49;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3288,366,0 chrXII 1043701 . C T 3490.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.81;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3490,363,0 chrXII 1044510 . C T 3080 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=24.06;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3113,321,0 chrXII 1044513 . G A 2975 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=22.88;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3008,321,0 chrXII 1044582 . G A 2933 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.65;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2966,318,0 chrXII 1044756 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.91;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3264,339,0 chrXII 1044768 . G A 2963 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=22.28;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2996,309,0 chrXII 1045206 . C T 2381 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2414,261,0 chrXII 1046184 . G A 4265.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.85;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4265,439,0 chrXII 1046304 . C T 4137.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4137,441,0 chrXII 1046601 . T C 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=4.122;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.950;QD=23.18;ReadPosRankSum=1.704;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2907,318,0 chrXII 1046803 . G A 3627.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.47;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3627,373,0 chrXII 1046882 . G A 2708 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.34;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2741,285,0 chrXII 1046930 . A C 2286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=111;Dels=0.00;FS=2.907;HaplotypeScore=12.5048;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.727;QD=20.59;ReadPosRankSum=2.069;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2319,261,0 chrXII 1047100 . G A 3271.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.1719;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.23;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3271,345,0 chrXII 1047210 . A T 3022 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3055,321,0 chrXII 1047367 . C T 3445.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3445,357,0 chrXII 1047516 . C T 2983 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.86;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3016,315,0 chrXII 1047572 . A G 2666 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.79;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2699,291,0 chrXII 1048336 . C T 3307.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.0450;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=23.13;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3307,345,0 chrXII 1048356 . C G 3452.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.8116;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.05;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,159:164:99:3452,384,0 chrXII 1048461 . C T 3993.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=26.44;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3993,415,0 chrXII 1048736 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.8368;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.70;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3436,355,0 chrXII 1048761 . C A 3055 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.30;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3088,324,0 chrXII 1049117 . A G 3956.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.41;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3956,426,0 chrXII 1051267 . G A 4316.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.80;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4316,468,0 chrXII 1051424 . A T 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=158;Dels=0.00;FS=2.945;HaplotypeScore=5.8207;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.368;QD=25.00;ReadPosRankSum=2.324;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3950,409,0 chrXII 1053001 . T C 3512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=3.779;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.334;QD=23.57;ReadPosRankSum=1.662;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3512,381,0 chrXII 1053107 . G C 1278 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1311,150,0 chrXII 1053226 . C T 1415 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.77;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1448,153,0 chrXII 1053296 . T A 25.23 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;DP=33;Dels=0.00;FS=11.929;HaplotypeScore=48.5618;MLEAC=1;MLEAF=0.500;MQ=46.23;MQ0=0;MQRankSum=-0.115;QD=0.76;ReadPosRankSum=2.187;SB=-2.184e-01 GT:AD:DP:GQ:PL 0/1:20,13:33:10:55,0,10 chrXII 1053367 . A G 872 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.38;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:905,99,0 chrXII 1053406 . T A 1272 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=24.46;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1305,132,0 chrXII 1053429 . A G 1225 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=20.76;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,55:59:99:1258,135,0 chrXII 1053460 . T C 1787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=0.791;QD=22.06;ReadPosRankSum=1.689;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1820,198,0 chrXII 1053517 . T A 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.982;QD=23.70;ReadPosRankSum=1.696;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2356,258,0 chrXII 1055717 . T C 2928 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2961,318,0 chrXII 1056105 . G C 2629 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.5219;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.66;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,112:116:99:2662,291,0 chrXII 1056565 . G A 3897.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.84;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3897,417,0 chrXII 1056569 . G C 3818.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.0588;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.33;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3818,411,0 chrXII 1057013 . C T 3851.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.4388;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3851,408,0 chrXII 1057068 . G A 4161.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:4161,430,0 chrXII 1057198 . G A 4525.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.2896;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.16;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4525,472,0 chrXII 1057374 . C T 4267.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.38;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4267,456,0 chrXII 1057525 . T C 3476.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.1348;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.33;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3476,405,0 chrXII 1057861 . C A 2792 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.09;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2825,300,0 chrXII 1057870 . G A 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-0.102;QD=21.70;ReadPosRankSum=-1.350;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3006,309,0 chrXII 1058423 . A T 4123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=164;Dels=0.00;FS=6.101;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.994;QD=25.14;ReadPosRankSum=2.932;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:4123,427,0 chrXII 1061034 . C T 2337.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.286;DP=267;Dels=0.00;FS=4.173;HaplotypeScore=12.5642;MLEAC=1;MLEAF=0.500;MQ=48.73;MQ0=3;MQRankSum=-0.153;QD=8.75;ReadPosRankSum=-0.780;SB=-1.067e+03 GT:AD:DP:GQ:PL 0/1:140,126:267:99:2367,0,2839 chrXII 1061217 . A C 2658 filter AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=38.66;MQ0=13;QD=16.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2691,294,0 chrXII 1061320 . C T 1279 filter AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=20.90;MQ0=59;QD=10.57;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:1312,144,0 chrXII 1061444 . T C 44.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;DP=10;Dels=0.00;FS=10.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.39;MQ0=5;MQRankSum=0.358;QD=4.50;ReadPosRankSum=1.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,8:10:9:77,9,0 chrXII 1061460 . C T 181.06 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.88;MQ0=7;QD=9.53;SB=-1.139e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:21:214,21,0 chrXII 1061521 . A T 412 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=26.35;MQ0=6;QD=12.48;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:51:445,51,0 chrXII 1061526 . A G 349 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=6;QD=9.97;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:45:382,45,0 chrXII 1061545 . T G 230 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=1;QD=12.11;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:33:263,33,0 chrXII 1061546 . G A 241 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.38;MQ0=0;QD=13.39;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:33:274,33,0 chrXII 1061567 . G T 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=0;QD=7.45;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:107,12,0 chrXII 1061569 . T G 67.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=0;QD=6.75;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:100,12,0 chrXII 1061574 . G A 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.55;MQ0=0;QD=6.04;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:105,12,0 chrXII 1061577 . C G 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.17;MQ0=0;QD=5.65;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:106,12,0 chrXII 1061595 . C T 107.26 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.84;MQ0=0;QD=6.31;SB=-3.027e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:15:140,15,0 chrXII 1061598 . T A 102.26 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.08;MQ0=0;QD=5.68;SB=-2.727e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:15:135,15,0 chrXII 1061614 . C T 155.06 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=1;QD=7.75;SB=-3.007e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:21:188,21,0 chrXII 1061635 . C T 666 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.74;MQ0=1;QD=15.49;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:75:699,75,0 chrXII 1061676 . G A 1372 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=4;QD=11.63;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1405,150,0 chrXII 1061688 . G A 1394 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=4;QD=10.81;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1427,153,0 chrXII 1061695 . T C 1330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=3;MQRankSum=-2.340;QD=9.71;ReadPosRankSum=2.413;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:2,135:137:99:1363,153,0 chrXII 1061733 . G C 786 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.45;MQ0=3;QD=5.54;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:96:819,96,0 chrXII 1061735 . A G 685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=138;Dels=0.00;FS=9.542;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.35;MQ0=3;MQRankSum=-1.501;QD=4.96;ReadPosRankSum=1.706;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:1,137:138:84:718,84,0 chrXII 1061752 . T C 400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.58;MQ0=0;MQRankSum=-1.279;QD=3.74;ReadPosRankSum=1.700;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:51:433,51,0 chrXII 1061759 . A G 451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=9.956;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.88;MQ0=0;MQRankSum=1.067;QD=4.51;ReadPosRankSum=1.697;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:57:484,57,0 chrXII 1061791 . A T 246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=60;Dels=0.00;FS=16.620;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.34;MQ0=2;MQRankSum=-2.322;QD=4.10;ReadPosRankSum=2.365;SB=-1.429e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:33:279,33,0 chrXII 1061798 . G C 294 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.28;MQ0=2;QD=5.55;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:39:327,39,0 chrXII 1061805 . A T 340 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.55;MQ0=3;QD=8.29;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:42:373,42,0 chrXII 1061807 . G A 351 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.53;MQ0=3;QD=8.36;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:45:384,45,0 chrXII 1061819 . G A 118.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.436;DP=49;Dels=0.00;FS=8.917;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=26.81;MQ0=3;MQRankSum=0.410;QD=2.41;ReadPosRankSum=-0.956;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,19:49:99:148,0,360 chrXII 1061902 . T G 1041 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=26.04;MQ0=2;QD=6.43;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,161:162:99:1074,120,0 chrXII 1061917 . C T 1042 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.56;MQ0=2;QD=6.35;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,163:164:99:1075,111,0 chrXII 1062016 . G A 136.13 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.83;MQ0=10;QD=6.19;SB=-1.106e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:18:169,18,0 chrXII 1062017 . C G 135.13 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.87;MQ0=10;QD=6.43;SB=-1.086e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:18:168,18,0 chrXII 1062072 . A G 49.97 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.02;MQ0=0;QD=3.57;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:82,9,0 chrXII 1062074 . T C 61.97 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.02;MQ0=0;QD=4.43;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:94,9,0 chrXII 1062086 . C T 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.311;DP=78;Dels=0.00;FS=150.102;HaplotypeScore=6.7642;MLEAC=1;MLEAF=0.500;MQ=24.97;MQ0=0;MQRankSum=0.150;QD=0.63;ReadPosRankSum=-1.556;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:14,64:78:62:79,0,62 chrXII 1062127 . T C 559 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.304;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;MQRankSum=-0.133;QD=9.32;ReadPosRankSum=3.304;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:4,56:60:69:592,69,0 chrXII 1062137 . T C 674 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.181;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=13.9384;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=0;MQRankSum=0.756;QD=10.87;ReadPosRankSum=4.070;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,55:62:87:707,87,0 chrXII 1062165 . C T 874.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.726;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=26.77;MQ0=1;MQRankSum=-0.120;QD=10.53;ReadPosRankSum=2.747;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:22,61:83:99:904,0,245 chrXII 1062180 . C T 686.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.306;DP=77;Dels=0.00;FS=2.710;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=23.37;MQ0=1;MQRankSum=-0.391;QD=8.91;ReadPosRankSum=0.705;SB=-5.101e+01 GT:AD:DP:GQ:PL 0/1:28,49:77:99:716,0,321 chrXII 1062188 . G A 359.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.805;DP=77;Dels=0.00;FS=10.967;HaplotypeScore=2.4932;MLEAC=1;MLEAF=0.500;MQ=21.39;MQ0=1;MQRankSum=0.966;QD=4.66;ReadPosRankSum=0.303;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,28:77:99:389,0,576 chrXII 1062192 . G A 495.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.329;DP=76;Dels=0.00;FS=14.206;HaplotypeScore=3.2819;MLEAC=1;MLEAF=0.500;MQ=21.47;MQ0=1;MQRankSum=-1.118;QD=6.51;ReadPosRankSum=-0.598;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:30,45:76:99:525,0,380 chrXII 1062194 . T A 492.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.173;DP=77;Dels=0.00;FS=14.213;HaplotypeScore=3.2819;MLEAC=1;MLEAF=0.500;MQ=21.43;MQ0=1;MQRankSum=-1.015;QD=6.39;ReadPosRankSum=-1.206;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:31,46:77:99:522,0,411 chrXII 1062213 . A G 553.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;DP=116;Dels=0.00;FS=38.192;HaplotypeScore=11.8302;MLEAC=1;MLEAF=0.500;MQ=21.15;MQ0=1;MQRankSum=0.994;QD=4.77;ReadPosRankSum=2.652;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,46:116:99:583,0,838 chrXII 1062240 . T A 890.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;DP=135;Dels=0.00;FS=97.904;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=21.11;MQ0=3;MQRankSum=0.383;QD=6.59;ReadPosRankSum=0.444;SB=-4.640e+02 GT:AD:DP:GQ:PL 0/1:53,82:135:99:920,0,641 chrXII 1062349 . A G 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.502;DP=163;Dels=0.00;FS=17.776;HaplotypeScore=17.0871;MLEAC=1;MLEAF=0.500;MQ=23.22;MQ0=27;MQRankSum=1.658;QD=0.16;ReadPosRankSum=-0.664;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,16:163:56:56,0,1045 chrXII 1062367 . C T 455.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.477;DP=143;Dels=0.00;FS=1.488;HaplotypeScore=110.2963;MLEAC=1;MLEAF=0.500;MQ=23.33;MQ0=23;MQRankSum=-0.548;QD=3.18;ReadPosRankSum=3.275;SB=-4.560e+02 GT:AD:DP:GQ:PL 0/1:50,93:143:99:485,0,661 chrXII 1062418 . G C 172.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;DP=173;Dels=0.03;FS=42.480;HaplotypeScore=23.6218;MLEAC=1;MLEAF=0.500;MQ=18.93;MQ0=23;MQRankSum=1.041;QD=0.99;ReadPosRankSum=-1.902;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:127,41:168:99:202,0,609 chrXII 1062435 . A G 352.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;DP=174;Dels=0.00;FS=9.077;HaplotypeScore=8.0638;MLEAC=1;MLEAF=0.500;MQ=18.51;MQ0=29;MQRankSum=-4.898;QD=2.02;ReadPosRankSum=-0.046;SB=-2.610e+02 GT:AD:DP:GQ:PL 0/1:62,112:174:99:382,0,724 chrXII 1062441 . G A 1312 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=18.65;MQ0=30;QD=8.36;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,157:157:99:1345,153,0 chrXII 1062442 . C T 287.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.748;DP=159;Dels=0.00;FS=4.446;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=18.60;MQ0=30;MQRankSum=-5.092;QD=1.81;ReadPosRankSum=-0.741;SB=-1.320e+02 GT:AD:DP:GQ:PL 0/1:62,97:159:99:317,0,737 chrXII 1062474 . A T 1110 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.568;DP=124;Dels=0.00;FS=2.495;HaplotypeScore=84.2158;MLEAC=2;MLEAF=1.00;MQ=19.77;MQ0=19;MQRankSum=0.394;QD=8.95;ReadPosRankSum=2.933;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:3,121:124:99:1143,123,0 chrXII 1062492 . A G 1119 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=19.63;MQ0=22;MQRankSum=-0.235;QD=7.99;ReadPosRankSum=1.703;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:1,139:140:99:1152,129,0 chrXII 1062523 . A G 496 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.20;MQ0=16;MQRankSum=-1.732;QD=6.05;ReadPosRankSum=1.680;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:1,81:82:60:529,60,0 chrXII 1062545 . C A 403 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.365;DP=82;Dels=0.00;FS=3.880;HaplotypeScore=57.0284;MLEAC=2;MLEAF=1.00;MQ=18.31;MQ0=21;MQRankSum=3.216;QD=4.91;ReadPosRankSum=1.020;SB=-1.340e-02 GT:AD:DP:GQ:PL 1/1:14,68:82:31:436,31,0 chrXII 1062590 . T C 2708 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.592;DP=279;Dels=0.00;FS=11.794;HaplotypeScore=44.1315;MLEAC=2;MLEAF=1.00;MQ=20.48;MQ0=30;MQRankSum=-3.373;QD=9.71;ReadPosRankSum=5.321;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:10,269:279:99:2741,300,0 chrXII 1062635 . G A 2010.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254;DP=365;Dels=0.00;FS=51.414;HaplotypeScore=18.1405;MLEAC=1;MLEAF=0.500;MQ=19.44;MQ0=35;MQRankSum=-0.203;QD=5.51;ReadPosRankSum=-0.262;SB=-1.740e+02 GT:AD:DP:GQ:PL 0/1:75,290:365:99:2040,0,344 chrXII 1062650 . A G 815.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.628;DP=317;Dels=0.00;FS=10.185;HaplotypeScore=4.2817;MLEAC=1;MLEAF=0.500;MQ=18.94;MQ0=30;MQRankSum=2.362;QD=2.57;ReadPosRankSum=2.802;SB=-3.600e+02 GT:AD:DP:GQ:PL 0/1:203,114:317:99:845,0,1110 chrXII 1062666 . G A 86.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.609;DP=260;Dels=0.00;FS=86.537;HaplotypeScore=24.3560;MLEAC=1;MLEAF=0.500;MQ=19.10;MQ0=27;MQRankSum=2.757;QD=0.33;ReadPosRankSum=4.574;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:227,33:260:99:116,0,1499 chrXII 1062667 . T C 112.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.532;DP=254;Dels=0.00;FS=88.541;HaplotypeScore=24.3560;MLEAC=1;MLEAF=0.500;MQ=18.59;MQ0=28;MQRankSum=3.037;QD=0.44;ReadPosRankSum=4.806;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:220,33:254:99:142,0,1285 chrXII 1062672 . G C 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;DP=243;Dels=0.00;FS=8.521;HaplotypeScore=29.3425;MLEAC=1;MLEAF=0.500;MQ=17.75;MQ0=28;MQRankSum=1.400;QD=0.14;ReadPosRankSum=1.245;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:226,16:243:64:64,0,1026 chrXII 1062679 . G T 251.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.795;DP=204;Dels=0.00;FS=71.319;HaplotypeScore=22.7212;MLEAC=1;MLEAF=0.500;MQ=17.19;MQ0=25;MQRankSum=3.368;QD=1.23;ReadPosRankSum=5.871;SB=-2.030e+02 GT:AD:DP:GQ:PL 0/1:156,46:204:99:281,0,456 chrXII 1062701 . A G 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.237;DP=92;Dels=0.00;FS=72.874;HaplotypeScore=46.8803;MLEAC=1;MLEAF=0.500;MQ=17.53;MQ0=6;MQRankSum=-3.058;QD=0.16;ReadPosRankSum=3.246;SB=4.350e-03 GT:AD:DP:GQ:PL 0/1:41,50:92:45:45,0,231 chrXII 1062706 . T C 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;DP=82;Dels=0.00;FS=91.484;HaplotypeScore=51.5063;MLEAC=1;MLEAF=0.500;MQ=17.07;MQ0=7;MQRankSum=-3.790;QD=0.52;ReadPosRankSum=2.041;SB=-3.003e+00 GT:AD:DP:GQ:PL 0/1:20,62:82:73:73,0,161 chrXII 1062713 . C G,T 172.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=58.5011;MLEAC=1,1;MLEAF=0.500,0.500;MQ=16.41;MQ0=6;QD=2.15;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/2:0,67,12:80:76:232,138,123,94,0,76 chrXII 1062727 . G C 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.582;DP=82;Dels=0.00;FS=25.262;HaplotypeScore=12.5586;MLEAC=1;MLEAF=0.500;MQ=16.26;MQ0=4;MQRankSum=-1.065;QD=0.90;ReadPosRankSum=3.461;SB=-7.504e+01 GT:AD:DP:GQ:PL 0/1:21,61:82:73:104,0,73 chrXII 1062760 . T A 576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.530;DP=102;Dels=0.00;FS=70.609;HaplotypeScore=21.6247;MLEAC=2;MLEAF=1.00;MQ=18.21;MQ0=2;MQRankSum=2.503;QD=5.65;ReadPosRankSum=-3.503;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:21,81:102:69:609,69,0 chrXII 1062772 . G A 879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.838;DP=141;Dels=0.00;FS=105.113;HaplotypeScore=32.3638;MLEAC=2;MLEAF=1.00;MQ=19.37;MQ0=2;MQRankSum=3.722;QD=6.23;ReadPosRankSum=0.546;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:13,128:141:96:912,96,0 chrXII 1062793 . A G 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.078;DP=203;Dels=0.00;FS=28.851;HaplotypeScore=5.9087;MLEAC=2;MLEAF=1.00;MQ=20.09;MQ0=2;MQRankSum=1.333;QD=6.52;ReadPosRankSum=3.243;SB=-3.401e+01 GT:AD:DP:GQ:PL 1/1:4,199:203:99:1357,150,0 chrXII 1062804 . T A 1372 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.322;DP=226;Dels=0.00;FS=29.763;HaplotypeScore=17.1098;MLEAC=2;MLEAF=1.00;MQ=20.13;MQ0=1;MQRankSum=2.008;QD=6.07;ReadPosRankSum=2.236;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:19,206:226:72:1405,72,0 chrXII 1062809 . A G 1378 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.216;DP=238;Dels=0.00;FS=4.756;HaplotypeScore=22.3425;MLEAC=2;MLEAF=1.00;MQ=20.00;MQ0=1;MQRankSum=2.449;QD=5.79;ReadPosRankSum=2.112;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:21,217:238:92:1411,92,0 chrXII 1062813 . C A 1360 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=17.1738;MLEAC=2;MLEAF=1.00;MQ=20.02;MQ0=1;MQRankSum=0.752;QD=5.89;ReadPosRankSum=0.147;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:15,216:231:88:1393,88,0 chrXII 1062815 . T C 1231 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-5.502;DP=232;Dels=0.00;FS=10.280;HaplotypeScore=15.2426;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=1;MQRankSum=2.360;QD=5.31;ReadPosRankSum=2.745;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:23,209:232:81:1264,81,0 chrXII 1062832 . G A 1306.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=8.472;DP=265;Dels=0.00;FS=105.168;HaplotypeScore=96.3772;MLEAC=2;MLEAF=1.00;MQ=19.85;MQ0=3;MQRankSum=4.443;QD=4.93;ReadPosRankSum=2.163;SB=-1.127e+00 GT:AD:DP:GQ:PL 1/1:49,216:265:1:1335,1,0 chrXII 1062840 . T C 1105.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.954;DP=264;Dels=0.00;FS=259.805;HaplotypeScore=128.2380;MLEAC=1;MLEAF=0.500;MQ=19.14;MQ0=5;MQRankSum=7.638;QD=4.19;ReadPosRankSum=2.645;SB=-1.197e-02 GT:AD:DP:GQ:PL 0/1:72,192:264:26:1135,0,26 chrXII 1062841 . G A 1344 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.621;DP=265;Dels=0.00;FS=44.060;HaplotypeScore=146.5089;MLEAC=2;MLEAF=1.00;MQ=19.10;MQ0=6;MQRankSum=3.985;QD=5.07;ReadPosRankSum=-2.609;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:36,228:265:83:1377,83,0 chrXII 1062858 . T A 505.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;DP=251;Dels=0.00;FS=353.227;HaplotypeScore=94.9035;MLEAC=1;MLEAF=0.500;MQ=15.47;MQ0=15;MQRankSum=9.409;QD=2.01;ReadPosRankSum=3.852;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:143,108:251:99:535,0,172 chrXII 1062859 . G T 478.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.285;DP=252;Dels=0.00;FS=347.173;HaplotypeScore=111.3179;MLEAC=1;MLEAF=0.500;MQ=15.48;MQ0=15;MQRankSum=9.180;QD=1.90;ReadPosRankSum=3.406;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:144,108:252:99:508,0,162 chrXII 1062860 . T C 507.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.977;DP=259;Dels=0.00;FS=356.219;HaplotypeScore=111.3179;MLEAC=1;MLEAF=0.500;MQ=15.36;MQ0=15;MQRankSum=8.927;QD=1.96;ReadPosRankSum=3.308;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:151,108:259:99:537,0,187 chrXII 1062865 . A T 129.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.310;DP=283;Dels=0.00;FS=14.176;HaplotypeScore=107.1391;MLEAC=1;MLEAF=0.500;MQ=15.19;MQ0=16;MQRankSum=0.657;QD=0.46;ReadPosRankSum=-3.321;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:218,65:283:99:159,0,664 chrXII 1062868 . C A 176.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;DP=285;Dels=0.01;FS=3.229;HaplotypeScore=107.9712;MLEAC=1;MLEAF=0.500;MQ=14.80;MQ0=18;MQRankSum=1.047;QD=0.62;ReadPosRankSum=-3.456;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:209,71:281:99:206,0,420 chrXII 1062869 . C A,T 550.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=8.056;DP=283;Dels=0.00;FS=247.399;HaplotypeScore=39.1959;MLEAC=1,1;MLEAF=0.500,0.500;MQ=14.52;MQ0=18;MQRankSum=10.833;QD=1.94;ReadPosRankSum=-0.661;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/2:106,73,104:283:99:610,354,360,214,0,215 chrXII 1062872 . T C 197.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;DP=335;Dels=0.00;FS=5.799;HaplotypeScore=62.6093;MLEAC=1;MLEAF=0.500;MQ=16.07;MQ0=19;MQRankSum=-5.544;QD=0.59;ReadPosRankSum=6.461;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:157,178:335:99:227,0,413 chrXII 1062881 . T C 880.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.802;DP=420;Dels=0.00;FS=5.673;HaplotypeScore=61.4948;MLEAC=1;MLEAF=0.500;MQ=14.91;MQ0=48;MQRankSum=6.293;QD=2.10;ReadPosRankSum=-3.703;SB=-3.240e+02 GT:AD:DP:GQ:PL 0/1:231,189:420:99:910,0,213 chrXII 1062942 . C T 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.634;DP=545;Dels=0.00;FS=139.643;HaplotypeScore=10.0950;MLEAC=1;MLEAF=0.500;MQ=17.84;MQ0=95;MQRankSum=-4.999;QD=0.06;ReadPosRankSum=-7.036;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:348,197:545:60:60,0,2759 chrXII 1062975 . C T 699.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.892;DP=398;Dels=0.00;FS=64.727;HaplotypeScore=16.8503;MLEAC=1;MLEAF=0.500;MQ=22.25;MQ0=56;MQRankSum=5.633;QD=1.76;ReadPosRankSum=7.933;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:257,141:398:99:729,0,2163 chrXII 1062988 . A C 2482 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.528;DP=299;Dels=0.00;FS=145.569;HaplotypeScore=26.4766;MLEAC=2;MLEAF=1.00;MQ=24.95;MQ0=42;MQRankSum=1.743;QD=8.30;ReadPosRankSum=4.809;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,286:299:99:2515,270,0 chrXII 1063026 . G A 1143.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.097;DP=369;Dels=0.00;FS=146.929;HaplotypeScore=13.5727;MLEAC=1;MLEAF=0.500;MQ=27.77;MQ0=24;MQRankSum=1.810;QD=3.10;ReadPosRankSum=5.395;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:204,164:369:99:1173,0,2491 chrXII 1063041 . T C 147.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.232;DP=393;Dels=0.00;FS=105.600;HaplotypeScore=18.5302;MLEAC=1;MLEAF=0.500;MQ=29.33;MQ0=25;MQRankSum=0.723;QD=0.37;ReadPosRankSum=1.187;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:296,97:393:99:177,0,4190 chrXII 1063161 . T C 400.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-12.717;DP=565;Dels=0.00;FS=172.759;HaplotypeScore=108.2325;MLEAC=1;MLEAF=0.500;MQ=24.95;MQ0=81;MQRankSum=-4.677;QD=0.71;ReadPosRankSum=2.428;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:372,185:565:99:430,0,4155 chrXII 1063164 . T C 650.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;DP=564;Dels=0.00;FS=69.231;HaplotypeScore=114.9301;MLEAC=1;MLEAF=0.500;MQ=25.26;MQ0=79;MQRankSum=5.203;QD=1.15;ReadPosRankSum=2.033;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:474,84:564:99:680,0,4096 chrXII 1063254 . A G 177.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.598;DP=374;Dels=0.00;FS=34.570;HaplotypeScore=32.0856;MLEAC=1;MLEAF=0.500;MQ=36.01;MQ0=2;MQRankSum=-6.722;QD=0.47;ReadPosRankSum=0.056;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:308,66:374:99:207,0,5285 chrXII 1063257 . T C 217.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.587;DP=369;Dels=0.00;FS=23.151;HaplotypeScore=34.3737;MLEAC=1;MLEAF=0.500;MQ=36.50;MQ0=2;MQRankSum=-6.203;QD=0.59;ReadPosRankSum=-0.660;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:293,71:369:99:247,0,5165 chrXII 1063294 . C T 2214.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.014;DP=291;Dels=0.00;FS=2.490;HaplotypeScore=21.6057;MLEAC=1;MLEAF=0.500;MQ=40.10;MQ0=0;MQRankSum=-9.064;QD=7.61;ReadPosRankSum=-1.907;SB=-1.830e+02 GT:AD:DP:GQ:PL 0/1:145,144:291:99:2244,0,2605 chrXII 1063308 . T C 2810.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.460;DP=295;Dels=0.00;FS=13.243;HaplotypeScore=16.5284;MLEAC=1;MLEAF=0.500;MQ=40.72;MQ0=0;MQRankSum=-7.069;QD=9.53;ReadPosRankSum=3.103;SB=-1.740e+02 GT:AD:DP:GQ:PL 0/1:138,157:295:99:2840,0,2489 chrXII 1063319 . A G 3004.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.988;DP=301;Dels=0.00;FS=7.162;HaplotypeScore=25.6077;MLEAC=1;MLEAF=0.500;MQ=40.07;MQ0=0;MQRankSum=-7.340;QD=9.98;ReadPosRankSum=5.563;SB=-1.930e+02 GT:AD:DP:GQ:PL 0/1:129,171:301:99:3034,0,1989 chrXII 1063340 . T G 1263.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.185;DP=292;Dels=0.01;FS=16.394;HaplotypeScore=86.4543;MLEAC=1;MLEAF=0.500;MQ=37.07;MQ0=3;MQRankSum=-7.886;QD=4.33;ReadPosRankSum=3.281;SB=-1.710e+02 GT:AD:DP:GQ:PL 0/1:198,89:289:99:1293,0,3332 chrXII 1063375 . A T 64.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;DP=281;Dels=0.00;FS=71.607;HaplotypeScore=23.0017;MLEAC=1;MLEAF=0.500;MQ=30.69;MQ0=33;MQRankSum=-6.595;QD=0.23;ReadPosRankSum=-6.572;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:207,74:281:94:94,0,3263 chrXII 1063441 . T C 2537.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.106;DP=226;Dels=0.00;FS=72.525;HaplotypeScore=18.6892;MLEAC=1;MLEAF=0.500;MQ=26.22;MQ0=24;MQRankSum=2.144;QD=11.23;ReadPosRankSum=1.580;SB=-5.960e+02 GT:AD:DP:GQ:PL 0/1:79,145:226:99:2567,0,564 chrXII 1063453 . A G 258.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DP=203;Dels=0.00;FS=127.397;HaplotypeScore=63.6175;MLEAC=1;MLEAF=0.500;MQ=27.69;MQ0=2;MQRankSum=-0.980;QD=1.27;ReadPosRankSum=-0.434;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:160,43:203:99:288,0,2815 chrXII 1063479 . T C 666.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.011;DP=109;Dels=0.00;FS=97.508;HaplotypeScore=11.7381;MLEAC=1;MLEAF=0.500;MQ=29.36;MQ0=0;MQRankSum=-2.379;QD=6.11;ReadPosRankSum=0.109;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:65,44:109:99:696,0,1474 chrXII 1063482 . T C 599.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.896;DP=98;Dels=0.00;FS=100.815;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.64;MQ0=0;MQRankSum=-2.410;QD=6.11;ReadPosRankSum=0.622;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:59,39:98:99:629,0,1329 chrXII 1063488 . A G 439.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.333;DP=77;Dels=0.00;FS=113.546;HaplotypeScore=86.0443;MLEAC=1;MLEAF=0.500;MQ=30.06;MQ0=0;MQRankSum=-2.920;QD=5.70;ReadPosRankSum=0.925;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,32:77:99:469,0,1084 chrXII 1063491 . G A 411.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;DP=68;Dels=0.00;FS=127.887;HaplotypeScore=151.5890;MLEAC=1;MLEAF=0.500;MQ=30.52;MQ0=0;MQRankSum=-2.432;QD=6.04;ReadPosRankSum=2.118;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,27:68:99:441,0,938 chrXII 1063510 . A G 405.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.878;DP=56;Dels=0.00;FS=107.840;HaplotypeScore=4.9425;MLEAC=1;MLEAF=0.500;MQ=27.95;MQ0=7;MQRankSum=-2.878;QD=7.23;ReadPosRankSum=0.132;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:27,29:56:99:435,0,355 chrXII 1063520 . G A 113.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684;DP=70;Dels=0.00;FS=54.055;HaplotypeScore=4.9526;MLEAC=1;MLEAF=0.500;MQ=26.48;MQ0=7;MQRankSum=2.165;QD=1.61;ReadPosRankSum=-0.134;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,12:70:99:143,0,630 chrXII 1063524 . A G 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.408;DP=72;Dels=0.00;FS=37.524;HaplotypeScore=5.6999;MLEAC=1;MLEAF=0.500;MQ=25.49;MQ0=7;MQRankSum=1.345;QD=0.61;ReadPosRankSum=-0.383;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,9:72:74:74,0,711 chrXII 1063529 . A G 47.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.352;DP=73;Dels=0.00;FS=24.781;HaplotypeScore=8.3669;MLEAC=1;MLEAF=0.500;MQ=24.69;MQ0=7;MQRankSum=0.389;QD=0.64;ReadPosRankSum=-1.548;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,9:73:77:77,0,721 chrXII 1063554 . A G 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.584;DP=82;Dels=0.00;FS=15.540;HaplotypeScore=115.0297;MLEAC=1;MLEAF=0.500;MQ=23.42;MQ0=10;MQRankSum=0.188;QD=0.16;ReadPosRankSum=-0.376;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,11:82:43:43,0,717 chrXII 1063559 . T G 384.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.585;DP=119;Dels=0.00;FS=105.901;HaplotypeScore=134.4577;MLEAC=1;MLEAF=0.500;MQ=22.42;MQ0=15;MQRankSum=1.246;QD=3.23;ReadPosRankSum=-4.106;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:55,64:119:99:414,0,467 chrXII 1063572 . T C 652.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.284;DP=154;Dels=0.00;FS=31.101;HaplotypeScore=70.5790;MLEAC=1;MLEAF=0.500;MQ=22.93;MQ0=16;MQRankSum=0.121;QD=4.23;ReadPosRankSum=7.165;SB=-4.728e+02 GT:AD:DP:GQ:PL 0/1:71,83:154:99:682,0,391 chrXII 1063576 . C A 391.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.686;DP=173;Dels=0.00;FS=91.034;HaplotypeScore=80.7312;MLEAC=1;MLEAF=0.500;MQ=22.77;MQ0=22;MQRankSum=-2.136;QD=2.26;ReadPosRankSum=7.900;SB=-2.189e-03 GT:AD:DP:GQ:PL 0/1:117,56:173:99:421,0,787 chrXII 1063578 . T C 306.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;DP=176;Dels=0.00;FS=68.041;HaplotypeScore=80.7747;MLEAC=1;MLEAF=0.500;MQ=22.58;MQ0=24;MQRankSum=-0.080;QD=1.74;ReadPosRankSum=-6.191;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,66:176:99:336,0,859 chrXII 1063586 . A G 600.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.552;DP=208;Dels=0.00;FS=101.465;HaplotypeScore=92.9982;MLEAC=1;MLEAF=0.500;MQ=23.09;MQ0=29;MQRankSum=0.815;QD=2.88;ReadPosRankSum=-5.893;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,84:207:99:630,0,857 chrXII 1063591 . C T 934.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.683;DP=213;Dels=0.00;FS=120.124;HaplotypeScore=120.8548;MLEAC=1;MLEAF=0.500;MQ=22.71;MQ0=36;MQRankSum=2.775;QD=4.39;ReadPosRankSum=-4.953;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,111:213:99:964,0,788 chrXII 1063593 . G C 909.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.473;DP=214;Dels=0.00;FS=116.538;HaplotypeScore=123.0567;MLEAC=1;MLEAF=0.500;MQ=22.60;MQ0=37;MQRankSum=2.732;QD=4.25;ReadPosRankSum=-5.741;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,111:214:99:939,0,739 chrXII 1063601 . T G 600.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.825;DP=214;Dels=0.00;FS=86.231;HaplotypeScore=125.0432;MLEAC=1;MLEAF=0.500;MQ=22.68;MQ0=34;MQRankSum=1.446;QD=2.80;ReadPosRankSum=-10.195;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,94:214:99:630,0,796 chrXII 1063660 . G A 216 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.628;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.61;MQ0=40;MQRankSum=1.770;QD=3.48;ReadPosRankSum=1.313;SB=-6.701e+01 GT:AD:DP:GQ:PL 1/1:38,23:62:30:249,30,0 chrXII 1063684 . T C 37.97 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=8.20;MQ0=28;QD=1.12;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:24,8:33:9:70,9,0 chrXII 1063703 . A G 64.51 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.35;MQ0=27;QD=1.95;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:21,12:33:12:97,12,0 chrXII 1063884 . C A 2320 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.907;DP=182;Dels=0.00;FS=19.886;HaplotypeScore=33.1662;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=20;MQRankSum=5.678;QD=12.75;ReadPosRankSum=3.571;SB=3.00 GT:AD:DP:GQ:PL 1/1:49,133:182:99:2353,110,0 chrXII 1063888 . T A 2236 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.640;DP=193;Dels=0.00;FS=13.338;HaplotypeScore=50.8006;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=23;MQRankSum=5.929;QD=11.59;ReadPosRankSum=2.696;SB=3.00 GT:AD:DP:GQ:PL 1/1:50,143:193:99:2269,125,0 chrXII 1063902 . G A 1848 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.267;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=77.7117;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=16;MQRankSum=4.669;QD=10.21;ReadPosRankSum=-0.503;SB=3.00 GT:AD:DP:GQ:PL 1/1:54,126:181:54:1881,54,0 chrXII 1063948 . C A 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.943;DP=326;Dels=0.00;FS=24.924;HaplotypeScore=22.1120;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=38;MQRankSum=-2.565;QD=0.39;ReadPosRankSum=0.551;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:203,119:326:99:156,0,2621 chrXII 1063955 . A T 110.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;DP=350;Dels=0.00;FS=55.132;HaplotypeScore=16.9981;MLEAC=1;MLEAF=0.500;MQ=27.67;MQ0=38;MQRankSum=-2.512;QD=0.31;ReadPosRankSum=1.159;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:221,129:350:99:140,0,3008 chrXII 1063969 . C T 4503.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.931;DP=368;Dels=0.00;FS=0.000;HaplotypeScore=84.2406;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=54;MQRankSum=-0.009;QD=12.24;ReadPosRankSum=3.145;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:11,357:368:99:4503,441,0 chrXII 1064078 . T G 913.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.793;DP=358;Dels=0.00;FS=7.066;HaplotypeScore=54.6147;MLEAC=1;MLEAF=0.500;MQ=39.12;MQ0=0;MQRankSum=-12.306;QD=2.55;ReadPosRankSum=-0.210;SB=-3.690e+02 GT:AD:DP:GQ:PL 0/1:256,101:358:99:943,0,5436 chrXII 1064133 . G A 1882.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.244;DP=400;Dels=0.00;FS=10.188;HaplotypeScore=24.3039;MLEAC=1;MLEAF=0.500;MQ=30.90;MQ0=1;MQRankSum=-9.648;QD=4.71;ReadPosRankSum=4.562;SB=-7.490e+02 GT:AD:DP:GQ:PL 0/1:260,139:400:99:1912,0,4833 chrXII 1064134 . G A 1925.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.000;DP=401;Dels=0.00;FS=10.197;HaplotypeScore=25.0925;MLEAC=1;MLEAF=0.500;MQ=30.87;MQ0=1;MQRankSum=-10.048;QD=4.80;ReadPosRankSum=4.586;SB=-7.800e+02 GT:AD:DP:GQ:PL 0/1:260,140:401:99:1955,0,4858 chrXII 1064156 . A G 8433.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.158;DP=408;Dels=0.00;FS=7.114;HaplotypeScore=14.9077;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=4;MQRankSum=0.294;QD=20.67;ReadPosRankSum=4.186;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:6,402:408:99:8433,959,0 chrXII 1064192 . A T 2192.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.089;DP=364;Dels=0.00;FS=12.091;HaplotypeScore=23.1041;MLEAC=1;MLEAF=0.500;MQ=34.99;MQ0=4;MQRankSum=-13.254;QD=6.02;ReadPosRankSum=5.117;SB=-4.100e+02 GT:AD:DP:GQ:PL 0/1:182,181:364:99:2222,0,3234 chrXII 1064224 . C T 1729.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.142;DP=307;Dels=0.00;FS=34.608;HaplotypeScore=15.7189;MLEAC=1;MLEAF=0.500;MQ=41.15;MQ0=3;MQRankSum=-13.685;QD=5.63;ReadPosRankSum=0.933;SB=-3.540e+02 GT:AD:DP:GQ:PL 0/1:166,139:307:99:1759,0,3156 chrXII 1064257 . T C 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.115;DP=210;Dels=0.00;FS=84.793;HaplotypeScore=34.9725;MLEAC=1;MLEAF=0.500;MQ=44.67;MQ0=0;MQRankSum=-9.112;QD=0.27;ReadPosRankSum=-6.275;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:162,47:210:87:87,0,3260 chrXII 1064292 . T A 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=207;Dels=0.00;FS=24.266;HaplotypeScore=38.0476;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;MQRankSum=2.121;QD=16.38;ReadPosRankSum=2.947;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:3,204:207:99:3391,372,0 chrXII 1064305 . G A 1935.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.282;DP=230;Dels=0.00;FS=101.038;HaplotypeScore=171.4103;MLEAC=1;MLEAF=0.500;MQ=30.73;MQ0=1;MQRankSum=6.142;QD=8.41;ReadPosRankSum=3.355;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/1:114,116:230:99:1965,0,575 chrXII 1064309 . A G 2135.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.908;DP=227;Dels=0.00;FS=337.765;HaplotypeScore=174.3809;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=1;MQRankSum=5.253;QD=9.41;ReadPosRankSum=5.560;SB=-9.017e+00 GT:AD:DP:GQ:PL 0/1:64,163:227:99:2165,0,376 chrXII 1064339 . A G 879.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.144;DP=223;Dels=0.00;FS=64.746;HaplotypeScore=73.0479;MLEAC=1;MLEAF=0.500;MQ=26.05;MQ0=3;MQRankSum=3.848;QD=3.94;ReadPosRankSum=-1.994;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:131,85:223:99:909,0,1016 chrXII 1064345 . G A 203.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DP=216;Dels=0.00;FS=131.339;HaplotypeScore=108.0630;MLEAC=1;MLEAF=0.500;MQ=25.08;MQ0=3;MQRankSum=3.533;QD=0.94;ReadPosRankSum=2.997;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:174,42:216:99:233,0,1528 chrXII 1064349 . T G 90.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.528;DP=211;Dels=0.00;FS=19.749;HaplotypeScore=107.6438;MLEAC=1;MLEAF=0.500;MQ=23.54;MQ0=3;MQRankSum=-3.588;QD=0.43;ReadPosRankSum=2.242;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:180,31:211:99:120,0,1653 chrXII 1064352 . C T 848.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.732;DP=206;Dels=0.00;FS=40.815;HaplotypeScore=95.5379;MLEAC=1;MLEAF=0.500;MQ=23.24;MQ0=3;MQRankSum=0.476;QD=4.12;ReadPosRankSum=-1.168;SB=-2.070e+02 GT:AD:DP:GQ:PL 0/1:112,94:206:99:878,0,701 chrXII 1064363 . G A 568.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.466;DP=180;Dels=0.00;FS=11.581;HaplotypeScore=58.1433;MLEAC=1;MLEAF=0.500;MQ=19.82;MQ0=3;MQRankSum=1.732;QD=3.16;ReadPosRankSum=2.513;SB=-2.650e+02 GT:AD:DP:GQ:PL 0/1:98,82:180:99:598,0,781 chrXII 1064364 . C A 263.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.945;DP=179;Dels=0.00;FS=67.351;HaplotypeScore=58.1433;MLEAC=1;MLEAF=0.500;MQ=19.58;MQ0=3;MQRankSum=2.451;QD=1.47;ReadPosRankSum=-1.191;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:135,44:179:99:293,0,1010 chrXII 1064375 . T A 1594 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.2506;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=3;QD=9.84;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:1627,195,0 chrXII 1064382 . G A 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.904;DP=152;Dels=0.00;FS=29.058;HaplotypeScore=57.1729;MLEAC=1;MLEAF=0.500;MQ=20.29;MQ0=3;MQRankSum=-3.945;QD=0.14;ReadPosRankSum=2.321;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:111,41:152:51:51,0,1032 chrXII 1064389 . T A 131.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;DP=143;Dels=0.00;FS=100.690;HaplotypeScore=96.0951;MLEAC=1;MLEAF=0.500;MQ=20.77;MQ0=3;MQRankSum=3.763;QD=0.92;ReadPosRankSum=-1.205;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,26:143:99:161,0,930 chrXII 1064396 . T C 515.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.716;DP=103;Dels=0.00;FS=3.883;HaplotypeScore=82.4554;MLEAC=1;MLEAF=0.500;MQ=20.86;MQ0=2;MQRankSum=4.412;QD=5.00;ReadPosRankSum=-3.094;SB=-4.060e+02 GT:AD:DP:GQ:PL 0/1:41,62:103:99:545,0,171 chrXII 1064397 . G A 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DP=101;Dels=0.00;FS=9.555;HaplotypeScore=95.1010;MLEAC=1;MLEAF=0.500;MQ=20.80;MQ0=2;MQRankSum=-1.266;QD=0.48;ReadPosRankSum=1.692;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:83,18:101:78:78,0,661 chrXII 1064401 . C A,T 738.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=40.4965;MLEAC=1,1;MLEAF=0.500,0.500;MQ=20.51;MQ0=2;QD=7.94;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/2:0,22,71:93:64:798,644,623,154,0,64 chrXII 1064407 . T C 297.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.396;DP=77;Dels=0.00;FS=41.723;HaplotypeScore=57.7327;MLEAC=1;MLEAF=0.500;MQ=20.54;MQ0=2;MQRankSum=3.964;QD=3.86;ReadPosRankSum=3.012;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:47,30:77:99:327,0,336 chrXII 1064408 . A G 749 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=36.2822;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=1;QD=10.55;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:93:782,93,0 chrXII 1064409 . A G 775 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=37.2556;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=1;QD=10.92;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:93:808,93,0 chrXII 1064410 . T C 51.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;DP=75;Dels=0.00;FS=6.324;HaplotypeScore=44.0280;MLEAC=1;MLEAF=0.500;MQ=20.36;MQ0=1;MQRankSum=-0.637;QD=0.68;ReadPosRankSum=-0.873;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:59,16:75:81:81,0,480 chrXII 1064432 . T G 368.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.892;DP=81;Dels=0.00;FS=134.028;HaplotypeScore=21.1444;MLEAC=1;MLEAF=0.500;MQ=22.69;MQ0=0;MQRankSum=0.176;QD=4.54;ReadPosRankSum=2.523;SB=-6.202e+01 GT:AD:DP:GQ:PL 0/1:36,45:81:99:398,0,653 chrXII 1064435 . T A 309.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;DP=87;Dels=0.00;FS=154.715;HaplotypeScore=19.3044;MLEAC=1;MLEAF=0.500;MQ=22.39;MQ0=0;MQRankSum=1.218;QD=3.55;ReadPosRankSum=3.477;SB=-1.902e+01 GT:AD:DP:GQ:PL 0/1:44,43:87:99:339,0,663 chrXII 1064445 . C T 123.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.918;DP=83;Dels=0.00;FS=178.200;HaplotypeScore=50.1529;MLEAC=1;MLEAF=0.500;MQ=21.76;MQ0=0;MQRankSum=0.377;QD=1.48;ReadPosRankSum=2.622;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:54,29:83:99:153,0,884 chrXII 1064447 . A G 99.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;DP=85;Dels=0.00;FS=178.200;HaplotypeScore=50.9416;MLEAC=1;MLEAF=0.500;MQ=21.57;MQ0=1;MQRankSum=0.215;QD=1.16;ReadPosRankSum=1.237;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:54,30:85:99:129,0,917 chrXII 1064449 . G A 79.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.665;DP=86;Dels=0.00;FS=215.436;HaplotypeScore=50.9416;MLEAC=1;MLEAF=0.500;MQ=21.44;MQ0=2;MQRankSum=0.469;QD=0.92;ReadPosRankSum=0.024;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:59,26:86:99:109,0,1035 chrXII 1064452 . A G 55.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.828;DP=91;Dels=0.00;FS=73.781;HaplotypeScore=53.0984;MLEAC=1;MLEAF=0.500;MQ=20.99;MQ0=3;MQRankSum=2.294;QD=0.60;ReadPosRankSum=-1.957;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:71,19:91:85:85,0,1126 chrXII 1064454 . T C 149.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.541;DP=106;Dels=0.00;FS=206.655;HaplotypeScore=52.9137;MLEAC=1;MLEAF=0.500;MQ=21.75;MQ0=3;MQRankSum=1.338;QD=1.41;ReadPosRankSum=-0.143;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:76,30:106:99:179,0,1036 chrXII 1064455 . G A 72.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.630;DP=107;Dels=0.00;FS=112.361;HaplotypeScore=52.9137;MLEAC=1;MLEAF=0.500;MQ=21.83;MQ0=3;MQRankSum=3.027;QD=0.67;ReadPosRankSum=-0.642;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,16:107:99:102,0,1105 chrXII 1064481 . G T 944.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.025;DP=224;Dels=0.00;FS=48.860;HaplotypeScore=33.6058;MLEAC=1;MLEAF=0.500;MQ=18.91;MQ0=4;MQRankSum=4.988;QD=4.21;ReadPosRankSum=8.919;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:171,53:224:99:974,0,675 chrXII 1064489 . T C 479.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.295;DP=259;Dels=0.00;FS=113.356;HaplotypeScore=142.6324;MLEAC=1;MLEAF=0.500;MQ=20.10;MQ0=4;MQRankSum=4.454;QD=1.85;ReadPosRankSum=-3.908;SB=-9.501e+01 GT:AD:DP:GQ:PL 0/1:214,45:259:99:509,0,1504 chrXII 1064493 . A C 2145.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.998;DP=271;Dels=0.00;FS=63.851;HaplotypeScore=159.3351;MLEAC=1;MLEAF=0.500;MQ=20.58;MQ0=5;MQRankSum=5.689;QD=7.92;ReadPosRankSum=-6.070;SB=-8.970e+02 GT:AD:DP:GQ:PL 0/1:92,178:271:23:2175,0,23 chrXII 1064494 . T G 922.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=159.3351;MLEAC=1;MLEAF=0.500;MQ=20.36;MQ0=5;MQRankSum=1.572;QD=3.32;ReadPosRankSum=0.357;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:211,67:278:99:952,0,1338 chrXII 1064501 . G T 711.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.155;DP=297;Dels=0.00;FS=68.381;HaplotypeScore=151.2314;MLEAC=1;MLEAF=0.500;MQ=20.63;MQ0=5;MQRankSum=2.783;QD=2.39;ReadPosRankSum=-6.271;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:245,52:297:99:741,0,1788 chrXII 1064514 . A G 1004.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.695;DP=311;Dels=0.00;FS=75.289;HaplotypeScore=241.7153;MLEAC=1;MLEAF=0.500;MQ=20.50;MQ0=5;MQRankSum=-7.695;QD=3.23;ReadPosRankSum=2.188;SB=-3.260e+02 GT:AD:DP:GQ:PL 0/1:84,223:311:99:1034,0,1414 chrXII 1064554 . A G 186.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.341;DP=395;Dels=0.00;FS=5.023;HaplotypeScore=78.8511;MLEAC=1;MLEAF=0.500;MQ=23.36;MQ0=3;MQRankSum=3.468;QD=0.47;ReadPosRankSum=3.214;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:355,40:395:99:216,0,4486 chrXII 1064643 . T C 1455 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=126;Dels=0.00;FS=6.820;HaplotypeScore=13.5845;MLEAC=2;MLEAF=1.00;MQ=21.09;MQ0=5;MQRankSum=2.060;QD=11.55;ReadPosRankSum=2.409;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:2,123:126:99:1488,177,0 chrXII 1064653 . C G 626.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.660;DP=152;Dels=0.00;FS=121.042;HaplotypeScore=67.2891;MLEAC=1;MLEAF=0.500;MQ=20.63;MQ0=3;MQRankSum=2.414;QD=4.12;ReadPosRankSum=5.949;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,51:152:99:656,0,549 chrXII 1064659 . A C,T 1223.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.743;DP=150;Dels=0.00;FS=62.336;HaplotypeScore=27.6405;MLEAC=1,1;MLEAF=0.500,0.500;MQ=20.79;MQ0=3;MQRankSum=0.903;QD=8.15;ReadPosRankSum=1.683;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/2:5,99,46:150:99:1283,371,239,912,0,867 chrXII 1064660 . C G 152.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;DP=154;Dels=0.00;FS=267.663;HaplotypeScore=65.8958;MLEAC=1;MLEAF=0.500;MQ=20.56;MQ0=3;MQRankSum=2.869;QD=0.99;ReadPosRankSum=-3.945;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:111,43:154:99:182,0,918 chrXII 1064679 . A G 825.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.831;DP=190;Dels=0.00;FS=165.015;HaplotypeScore=57.5383;MLEAC=1;MLEAF=0.500;MQ=18.74;MQ0=2;MQRankSum=0.893;QD=4.34;ReadPosRankSum=2.663;SB=-5.201e+01 GT:AD:DP:GQ:PL 0/1:51,122:190:99:855,0,229 chrXII 1064687 . G A 1448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=197;Dels=0.00;FS=53.685;HaplotypeScore=52.5444;MLEAC=2;MLEAF=1.00;MQ=19.03;MQ0=2;MQRankSum=5.491;QD=7.35;ReadPosRankSum=-4.116;SB=-4.399e+02 GT:AD:DP:GQ:PL 1/1:79,118:197:51:1481,51,0 chrXII 1064693 . A T 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=68.7820;MLEAC=2;MLEAF=1.00;MQ=19.01;MQ0=1;MQRankSum=-1.675;QD=8.82;ReadPosRankSum=2.378;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:2,205:207:99:1859,227,0 chrXII 1064716 . A G 2580 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=287;Dels=0.05;FS=0.000;HaplotypeScore=270.7896;MLEAC=2;MLEAF=1.00;MQ=20.82;MQ0=4;MQRankSum=0.066;QD=8.99;ReadPosRankSum=-0.145;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,265:273:99:2613,308,0 chrXII 1064721 . G A 331.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.379;DP=313;Dels=0.00;FS=236.694;HaplotypeScore=205.1366;MLEAC=1;MLEAF=0.500;MQ=21.06;MQ0=4;MQRankSum=3.245;QD=1.06;ReadPosRankSum=-6.278;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:254,58:313:99:361,0,1836 chrXII 1064729 . A G 139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;DP=319;Dels=0.00;FS=41.245;HaplotypeScore=135.5319;MLEAC=1;MLEAF=0.500;MQ=21.17;MQ0=4;MQRankSum=5.207;QD=0.44;ReadPosRankSum=2.862;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:276,43:319:99:169,0,2282 chrXII 1064738 . G A 2141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.280;DP=317;Dels=0.00;FS=191.465;HaplotypeScore=102.4807;MLEAC=1;MLEAF=0.500;MQ=21.88;MQ0=4;MQRankSum=-2.282;QD=6.75;ReadPosRankSum=3.095;SB=-3.990e+02 GT:AD:DP:GQ:PL 0/1:70,246:317:99:2171,0,688 chrXII 1064756 . A G 364.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.864;DP=350;Dels=0.00;FS=2.511;HaplotypeScore=141.0465;MLEAC=1;MLEAF=0.500;MQ=23.40;MQ0=4;MQRankSum=-4.422;QD=1.04;ReadPosRankSum=3.064;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:268,82:350:99:394,0,3331 chrXII 1064757 . C A 305.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.891;DP=342;Dels=0.00;FS=12.413;HaplotypeScore=141.0465;MLEAC=1;MLEAF=0.500;MQ=23.45;MQ0=4;MQRankSum=7.209;QD=0.89;ReadPosRankSum=-2.422;SB=-2.580e+02 GT:AD:DP:GQ:PL 0/1:300,42:342:99:335,0,3205 chrXII 1064765 . T C 51.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.797;DP=344;Dels=0.00;FS=36.905;HaplotypeScore=132.1068;MLEAC=1;MLEAF=0.500;MQ=24.43;MQ0=3;MQRankSum=2.944;QD=0.15;ReadPosRankSum=-0.029;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:315,29:344:81:81,0,2880 chrXII 1064779 . C G 1388.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.786;DP=322;Dels=0.00;FS=11.146;HaplotypeScore=127.3533;MLEAC=1;MLEAF=0.500;MQ=24.99;MQ0=3;MQRankSum=6.764;QD=4.31;ReadPosRankSum=3.292;SB=-3.880e+02 GT:AD:DP:GQ:PL 0/1:208,114:322:99:1418,0,2109 chrXII 1064787 . T C 737.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220;DP=303;Dels=0.00;FS=85.705;HaplotypeScore=195.0588;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=3;MQRankSum=5.878;QD=2.43;ReadPosRankSum=3.548;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:231,70:303:99:767,0,2630 chrXII 1064788 . G A 2050.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.347;DP=298;Dels=0.00;FS=52.059;HaplotypeScore=194.2701;MLEAC=1;MLEAF=0.500;MQ=25.54;MQ0=3;MQRankSum=6.188;QD=6.88;ReadPosRankSum=5.182;SB=-3.790e+02 GT:AD:DP:GQ:PL 0/1:144,154:298:99:2080,0,1296 chrXII 1064795 . A G 805.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.104;DP=261;Dels=0.00;FS=3.970;HaplotypeScore=194.4878;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=2;MQRankSum=5.531;QD=3.08;ReadPosRankSum=4.541;SB=-3.090e+02 GT:AD:DP:GQ:PL 0/1:191,70:261:99:835,0,2385 chrXII 1064797 . T C,G 3582.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=104.0903;MLEAC=1,1;MLEAF=0.500,0.500;MQ=26.11;MQ0=2;QD=14.56;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/2:0,172,71:246:99:3582,1182,876,2400,0,2259 chrXII 1064799 . G C 860.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;DP=239;Dels=0.00;FS=6.422;HaplotypeScore=97.8314;MLEAC=1;MLEAF=0.500;MQ=26.20;MQ0=2;MQRankSum=4.789;QD=3.60;ReadPosRankSum=4.208;SB=-3.890e+02 GT:AD:DP:GQ:PL 0/1:168,71:239:99:890,0,2203 chrXII 1064832 . G A 147.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.555;DP=151;Dels=0.00;FS=16.715;HaplotypeScore=87.6878;MLEAC=1;MLEAF=0.500;MQ=26.15;MQ0=4;MQRankSum=-2.350;QD=0.97;ReadPosRankSum=2.970;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,37:151:99:177,0,1438 chrXII 1064834 . T C 608.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;DP=131;Dels=0.00;FS=5.236;HaplotypeScore=96.2932;MLEAC=1;MLEAF=0.500;MQ=25.72;MQ0=4;MQRankSum=3.948;QD=4.64;ReadPosRankSum=2.363;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:76,55:131:99:638,0,695 chrXII 1064835 . G A 1610 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.452;DP=130;Dels=0.00;FS=58.807;HaplotypeScore=97.2826;MLEAC=2;MLEAF=1.00;MQ=25.78;MQ0=4;MQRankSum=2.410;QD=12.38;ReadPosRankSum=2.597;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:17,113:130:99:1643,112,0 chrXII 1064837 . C T 1676 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.061;DP=132;Dels=0.00;FS=9.224;HaplotypeScore=95.2729;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=4;MQRankSum=-0.300;QD=12.70;ReadPosRankSum=0.792;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:9,122:132:99:1709,126,0 chrXII 1064839 . G A 206.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;DP=142;Dels=0.00;FS=17.293;HaplotypeScore=100.2057;MLEAC=1;MLEAF=0.500;MQ=25.96;MQ0=4;MQRankSum=-2.337;QD=1.45;ReadPosRankSum=0.944;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,39:142:99:236,0,1253 chrXII 1064843 . T A 367.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.344;DP=162;Dels=0.00;FS=47.413;HaplotypeScore=83.2212;MLEAC=1;MLEAF=0.500;MQ=25.33;MQ0=5;MQRankSum=3.854;QD=2.27;ReadPosRankSum=4.442;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:118,44:162:99:397,0,984 chrXII 1064882 . G A 148.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;DP=160;Dels=0.00;FS=20.695;HaplotypeScore=140.0857;MLEAC=1;MLEAF=0.500;MQ=23.22;MQ0=11;MQRankSum=0.995;QD=0.93;ReadPosRankSum=0.966;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:131,29:160:99:178,0,845 chrXII 1064897 . G T 141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;DP=177;Dels=0.00;FS=12.064;HaplotypeScore=120.4884;MLEAC=1;MLEAF=0.500;MQ=23.15;MQ0=10;MQRankSum=-3.341;QD=0.80;ReadPosRankSum=-0.470;SB=-9.401e+01 GT:AD:DP:GQ:PL 0/1:93,72:177:99:171,0,925 chrXII 1064906 . A G 532.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;DP=198;Dels=0.00;FS=55.913;HaplotypeScore=58.0261;MLEAC=1;MLEAF=0.500;MQ=23.25;MQ0=8;MQRankSum=1.828;QD=2.69;ReadPosRankSum=2.774;SB=-3.300e+02 GT:AD:DP:GQ:PL 0/1:136,62:198:99:562,0,665 chrXII 1064908 . G A 1465 filter AC=2;AF=1.00;AN=2;DP=195;Dels=0.01;FS=0.000;HaplotypeScore=64.4610;MLEAC=2;MLEAF=1.00;MQ=22.98;MQ0=8;QD=7.51;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,192:193:99:1498,165,0 chrXII 1064917 . A G 186.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.409;DP=218;Dels=0.00;FS=31.135;HaplotypeScore=107.3603;MLEAC=1;MLEAF=0.500;MQ=23.29;MQ0=7;MQRankSum=-4.132;QD=0.85;ReadPosRankSum=1.444;SB=-1.520e+02 GT:AD:DP:GQ:PL 0/1:116,102:218:99:216,0,896 chrXII 1064932 . A G 1421 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.170;DP=219;Dels=0.00;FS=27.195;HaplotypeScore=60.1193;MLEAC=2;MLEAF=1.00;MQ=23.93;MQ0=5;MQRankSum=-1.802;QD=6.49;ReadPosRankSum=3.849;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:6,213:219:99:1454,168,0 chrXII 1064941 . A G 739.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.629;DP=233;Dels=0.00;FS=81.319;HaplotypeScore=78.9037;MLEAC=1;MLEAF=0.500;MQ=23.55;MQ0=3;MQRankSum=-0.057;QD=3.17;ReadPosRankSum=3.074;SB=-6.740e+02 GT:AD:DP:GQ:PL 0/1:63,170:233:99:769,0,642 chrXII 1064959 . G T 302.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.567;DP=212;Dels=0.00;FS=158.240;HaplotypeScore=299.0443;MLEAC=1;MLEAF=0.500;MQ=24.56;MQ0=0;MQRankSum=1.289;QD=1.42;ReadPosRankSum=1.501;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:151,38:212:99:332,0,909 chrXII 1064961 . A G 525.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.344;DP=198;Dels=0.00;FS=188.960;HaplotypeScore=291.8009;MLEAC=1;MLEAF=0.500;MQ=24.63;MQ0=0;MQRankSum=3.079;QD=2.65;ReadPosRankSum=-0.458;SB=-3.730e+02 GT:AD:DP:GQ:PL 0/1:76,122:198:99:555,0,556 chrXII 1064984 . G A 533.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;DP=174;Dels=0.00;FS=12.315;HaplotypeScore=151.0626;MLEAC=1;MLEAF=0.500;MQ=25.16;MQ0=0;MQRankSum=3.535;QD=3.06;ReadPosRankSum=7.699;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:119,38:174:99:563,0,519 chrXII 1064986 . G T 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;DP=169;Dels=0.00;FS=138.191;HaplotypeScore=255.4311;MLEAC=1;MLEAF=0.500;MQ=25.04;MQ0=0;MQRankSum=-0.937;QD=0.42;ReadPosRankSum=-1.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,28:169:99:101,0,1025 chrXII 1064997 . A G 755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.962;DP=115;Dels=0.00;FS=20.919;HaplotypeScore=75.9477;MLEAC=2;MLEAF=1.00;MQ=26.42;MQ0=0;MQRankSum=0.599;QD=6.57;ReadPosRankSum=4.680;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:74,41:115:87:788,87,0 chrXII 1065009 . G A 85.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.430;DP=105;Dels=0.00;FS=8.927;HaplotypeScore=27.8787;MLEAC=1;MLEAF=0.500;MQ=26.46;MQ0=0;MQRankSum=1.358;QD=0.81;ReadPosRankSum=-2.659;SB=-1.930e+02 GT:AD:DP:GQ:PL 0/1:43,42:105:99:115,0,706 chrXII 1065136 . G A 110.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.827;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=117.9544;MLEAC=1;MLEAF=0.500;MQ=23.60;MQ0=6;MQRankSum=1.033;QD=1.11;ReadPosRankSum=-4.256;SB=-6.530e-03 GT:AD:DP:GQ:PL 0/1:90,9:99:53:140,0,53 chrXII 1065396 . G A 411 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=0;QD=24.18;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:48:444,48,0 chrXII 1065403 . T G 381 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=0;QD=22.41;SB=-6.725e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:45:414,45,0 chrXII 1065450 . C T 138.13 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.41;MQ0=15;QD=5.53;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:18:171,18,0 chrXIII 5522 . C A 229 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.15;MQ0=2;MQRankSum=-1.734;QD=9.54;ReadPosRankSum=1.576;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,23:24:30:262,30,0 chrXIII 5523 . A G 221 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.15;MQ0=2;MQRankSum=-1.734;QD=9.21;ReadPosRankSum=1.576;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,23:24:30:254,30,0 chrXIII 5532 . T G 231 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=20.57;MQ0=2;QD=9.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:24:30:264,30,0 chrXIII 8262 . A G 149.06 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.45;MQ0=11;QD=8.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:21:182,21,0 chrXIII 8279 . G C 315 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.73;MQ0=11;QD=12.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:39:348,39,0 chrXIII 8317 . G A 722 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=25.65;MQ0=20;QD=13.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:52:84:755,84,0 chrXIII 8385 . G A 541 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=13;QD=12.02;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:60:574,60,0 chrXIII 8415 . T G 267 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=4;QD=7.63;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,35:35:33:300,33,0 chrXIII 8429 . C G 293 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.98;MQ0=0;QD=8.88;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,33:33:33:326,33,0 chrXIII 8431 . G T 270 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=26.6546;MLEAC=2;MLEAF=1.00;MQ=34.98;MQ0=0;QD=8.18;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,33:33:33:303,33,0 chrXIII 8449 . A G 350 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;QD=7.29;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:42:383,42,0 chrXIII 8450 . C T 364 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.03;MQ0=0;QD=7.14;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:42:397,42,0 chrXIII 8461 . A T 620 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;QD=8.99;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:72:653,72,0 chrXIII 8537 . A G 2175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=4.992;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=0.772;QD=21.32;ReadPosRankSum=1.664;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2208,240,0 chrXIII 8543 . T C 2128 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=21.71;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2161,243,0 chrXIII 8656 . C T 2615 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;QD=22.54;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2648,276,0 chrXIII 8673 . C T 2566 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=21.21;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2599,273,0 chrXIII 8679 . A G 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;MQRankSum=1.221;QD=19.86;ReadPosRankSum=1.619;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2476,270,0 chrXIII 8859 . A G 3056 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=22.64;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3089,336,0 chrXIII 8872 . C T 2783 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=111.0817;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=21.41;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2816,306,0 chrXIII 8939 . A G 1684 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=3.043;HaplotypeScore=5.2195;MLEAC=2;MLEAF=1.00;MQ=35.87;MQ0=0;MQRankSum=1.543;QD=14.77;ReadPosRankSum=2.407;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:1717,192,0 chrXIII 8946 . G A 1484 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.39;MQ0=0;QD=14.13;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1517,165,0 chrXIII 8949 . A G 1489 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=104;Dels=0.00;FS=3.053;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.46;MQ0=0;MQRankSum=-1.408;QD=14.32;ReadPosRankSum=2.402;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1522,168,0 chrXIII 8968 . A T 1608 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.69;MQ0=0;QD=14.49;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1641,174,0 chrXIII 8973 . G T 1596 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=14.38;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1629,174,0 chrXIII 9141 . C T 2239 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=100.6781;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=1;QD=20.54;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2272,249,0 chrXIII 9200 . A G 2190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=111;Dels=0.02;FS=2.952;HaplotypeScore=30.0231;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=1;MQRankSum=1.312;QD=19.73;ReadPosRankSum=2.310;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2223,243,0 chrXIII 9278 . C T 2711 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.59;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2744,294,0 chrXIII 9360 . A G 2172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=1.092;QD=23.11;ReadPosRankSum=1.694;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,91:94:99:2205,243,0 chrXIII 9453 . T A 2853 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.97;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2886,306,0 chrXIII 9517 . A G 2147 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=18.83;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2180,240,0 chrXIII 9525 . A C 1953 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=68.0074;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=18.78;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1986,216,0 chrXIII 9709 . T C 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=-0.804;QD=21.79;ReadPosRankSum=1.696;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2147,240,0 chrXIII 9730 . T C 1857 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=21.59;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1890,207,0 chrXIII 9746 . C T 1615 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=19.00;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1648,174,0 chrXIII 9755 . C T 1622 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;QD=18.22;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1655,177,0 chrXIII 9829 . T C 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.2062;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.980;QD=21.28;ReadPosRankSum=1.705;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2799,309,0 chrXIII 9880 . C T 2789 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.67;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2822,300,0 chrXIII 9896 . C T 2661 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=23.97;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2694,282,0 chrXIII 9944 . T C 2262 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=23.56;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2295,252,0 chrXIII 10120 . C T 2541 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.91;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2574,279,0 chrXIII 10131 . T A 2482 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.98;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2515,264,0 chrXIII 10239 . T C 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;MQRankSum=-1.636;QD=21.94;ReadPosRankSum=1.684;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3193,348,0 chrXIII 10479 . T C 3068 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.56;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3101,345,0 chrXIII 10737 . C T 3820.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=11.3314;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.87;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3820,411,0 chrXIII 10868 . G A 3948.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.6787;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3948,420,0 chrXIII 10941 . T C 4140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.961;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.608;QD=22.62;ReadPosRankSum=2.260;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:2,179:183:99:4140,433,0 chrXIII 11141 . C G 4182.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=25.19;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4182,462,0 chrXIII 11305 . A G 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2401;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.214;QD=22.65;ReadPosRankSum=2.412;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:2,130:133:99:3045,327,0 chrXIII 11319 . T A 2592 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.34;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2625,285,0 chrXIII 11440 . G A 1132 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1165,129,0 chrXIII 11575 . C A 2539 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.39;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2572,267,0 chrXIII 11831 . T C 3563.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.24;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3563,390,0 chrXIII 11972 . C T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.0681;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.66;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4141,441,0 chrXIII 12086 . A T 3294.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3294,357,0 chrXIII 12215 . T C 3142 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3175,345,0 chrXIII 12311 . A G 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.182;DP=148;Dels=0.00;FS=7.974;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.510;QD=23.18;ReadPosRankSum=2.383;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3430,378,0 chrXIII 12440 . C T 4361.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.2116;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=24.36;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4361,465,0 chrXIII 12746 . A G 5179.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=229;Dels=0.00;FS=8.007;HaplotypeScore=13.1246;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.760;QD=22.62;ReadPosRankSum=2.406;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:2,226:229:99:5179,570,0 chrXIII 12902 . T G 5544.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=21.7562;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.72;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5544,612,0 chrXIII 13034 . G A 6646.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=13.5568;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.80;SB=-3.439e+03 GT:AD:DP:GQ:PL 1/1:0,265:268:99:6646,715,0 chrXIII 13064 . A G 5862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=253;Dels=0.00;FS=10.231;HaplotypeScore=16.6612;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.780;QD=23.17;ReadPosRankSum=2.900;SB=-2.869e+03 GT:AD:DP:GQ:PL 1/1:3,248:253:99:5862,642,0 chrXIII 13242 . T G 4526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=200;Dels=0.00;FS=4.575;HaplotypeScore=17.4617;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.714;QD=22.63;ReadPosRankSum=1.714;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,195:200:99:4526,504,0 chrXIII 13364 . C T 3879.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3879,417,0 chrXIII 13439 . A T 3713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.994;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.521;QD=25.09;ReadPosRankSum=1.685;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3713,399,0 chrXIII 13572 . T C 4625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=201;Dels=0.00;FS=6.047;HaplotypeScore=9.6224;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=0.345;QD=23.01;ReadPosRankSum=2.935;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:3,198:201:99:4625,510,0 chrXIII 13809 . C G 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=4.217;HaplotypeScore=1.9612;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;MQRankSum=-0.564;QD=16.41;ReadPosRankSum=1.712;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:2823,312,0 chrXIII 13831 . A G 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;MQRankSum=-1.302;QD=17.25;ReadPosRankSum=1.712;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:2966,324,0 chrXIII 13852 . T A 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=181;Dels=0.00;FS=4.868;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=43.33;MQ0=0;MQRankSum=-0.565;QD=19.96;ReadPosRankSum=1.541;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3612,387,0 chrXIII 13896 . C A 4213.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.7346;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=21.61;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4213,442,0 chrXIII 13907 . C T 4267.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=21.66;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4267,453,0 chrXIII 13915 . G A 4050.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=22.13;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4050,435,0 chrXIII 13986 . C T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.79;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3396,360,0 chrXIII 14228 . G A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.46;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3645,390,0 chrXIII 14260 . G C 3764.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.7927;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.44;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3764,405,0 chrXIII 14341 . G C 3277.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=24.10;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3277,360,0 chrXIII 14383 . T C 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=2.985;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-1.172;QD=24.07;ReadPosRankSum=2.373;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3138,348,0 chrXIII 14478 . G C 4671.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.79;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4671,510,0 chrXIII 14562 . A G 4876.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.2020;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=22.89;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4876,540,0 chrXIII 14580 . A G 4279.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=21.40;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4279,456,0 chrXIII 14592 . A T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.19;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3796,408,0 chrXIII 14705 . G A 6253.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=12.8010;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=23.87;SB=-3.420e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:6253,667,0 chrXIII 14781 . C A 5468.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=14.2340;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.14;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5468,600,0 chrXIII 14857 . C T 4583.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.8872;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=22.03;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4583,487,0 chrXIII 14913 . A G 90.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.707;DP=204;Dels=0.00;FS=3.930;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;MQRankSum=-2.762;QD=0.44;ReadPosRankSum=-3.841;SB=-2.113e+02 GT:AD:DP:GQ:PL 1/1:198,6:204:15:123,15,0 chrXIII 14915 . A G 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.197;DP=208;Dels=0.00;FS=3.909;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.01;MQ0=0;MQRankSum=1.167;QD=0.17;ReadPosRankSum=4.030;SB=-2.208e+03 GT:AD:DP:GQ:PL 0/1:6,202:208:54:65,0,54 chrXIII 14933 . C A 3778.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=18.70;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:3778,402,0 chrXIII 14934 . G T 3594.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=17.45;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:3594,390,0 chrXIII 15055 . A T 4862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=196;Dels=0.00;FS=12.921;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.895;QD=24.81;ReadPosRankSum=3.406;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:4,192:196:99:4862,517,0 chrXIII 15102 . G A 5513.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.3726;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=26.25;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5513,580,0 chrXIII 15357 . A G 4790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=223;Dels=0.00;FS=2.823;HaplotypeScore=19.5966;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.138;QD=21.48;ReadPosRankSum=2.383;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:2,221:223:99:4790,525,0 chrXIII 15470 . C T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=15.1542;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.14;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3633,384,0 chrXIII 15621 . T C 3504.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.6356;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.04;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3504,390,0 chrXIII 16224 . T C 4106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=18.7084;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.489;QD=22.19;ReadPosRankSum=1.713;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4106,456,0 chrXIII 16287 . G A 5628.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.45;SB=-2.984e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5628,601,0 chrXIII 16314 . C T 5575.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.96;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:5575,606,0 chrXIII 16338 . G A 5361.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.19;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:5361,591,0 chrXIII 16368 . T C 5059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=18.1215;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.431;QD=20.57;ReadPosRankSum=1.690;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:1,244:246:99:5059,570,0 chrXIII 16406 . G A 5189.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=18.40;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,282:282:99:5189,550,0 chrXIII 16418 . T C 4706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=0.665;QD=16.28;ReadPosRankSum=2.415;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:2,284:289:99:4706,510,0 chrXIII 16434 . A G 4796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=311;Dels=0.00;FS=9.684;HaplotypeScore=10.1759;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;MQRankSum=0.772;QD=15.42;ReadPosRankSum=2.418;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:2,308:311:99:4796,546,0 chrXIII 16498 . G T 5557.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=16.0959;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=20.74;SB=-3.561e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:5557,592,0 chrXIII 16539 . G A 6199.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=13.5130;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.75;SB=-2.920e+03 GT:AD:DP:GQ:PL 1/1:0,259:261:99:6199,658,0 chrXIII 16764 . G A 5414.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.84;SB=-2.802e+03 GT:AD:DP:GQ:PL 1/1:0,235:237:99:5414,571,0 chrXIII 17364 . T C 3807.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.9177;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.03;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,176:181:99:3807,417,0 chrXIII 17462 . T C 4044.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.72;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4044,438,0 chrXIII 17648 . T C 4309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=204;Dels=0.00;FS=6.047;HaplotypeScore=10.1643;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.825;QD=21.12;ReadPosRankSum=2.945;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:3,199:204:99:4309,465,0 chrXIII 17660 . T C 4293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=195;Dels=0.00;FS=3.027;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-0.762;QD=22.02;ReadPosRankSum=2.412;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4293,474,0 chrXIII 17810 . C T 4539.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.27;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4539,481,0 chrXIII 17843 . T A 4169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=3.163;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.916;QD=23.82;ReadPosRankSum=1.692;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4169,450,0 chrXIII 17913 . T C 4139.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.52;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4139,453,0 chrXIII 17955 . T G 3545.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8634;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.75;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3545,384,0 chrXIII 18546 . C T 3442.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.76;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3442,363,0 chrXIII 18596 . A G 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=4.260;HaplotypeScore=8.9564;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.516;QD=24.65;ReadPosRankSum=1.684;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3549,387,0 chrXIII 18729 . C T 1463 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.29;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1496,165,0 chrXIII 18810 . A G 1835 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1868,204,0 chrXIII 19141 . G A 2616 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2649,291,0 chrXIII 19498 . A G 4403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.150;DP=206;Dels=0.00;FS=6.085;HaplotypeScore=27.0280;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.156;QD=21.37;ReadPosRankSum=2.414;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4403,489,0 chrXIII 20313 . A G 3531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=159;Dels=0.00;FS=2.650;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.226;QD=22.21;ReadPosRankSum=2.356;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3531,381,0 chrXIII 20392 . A G 3594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=165;Dels=0.00;FS=5.346;HaplotypeScore=15.9183;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.250;QD=21.78;ReadPosRankSum=2.958;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3594,402,0 chrXIII 20497 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.295;QD=23.18;ReadPosRankSum=1.709;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3430,378,0 chrXIII 21082 . C T 3566.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=20.73;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3566,396,0 chrXIII 21100 . G T 2959 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.44;MQ0=0;QD=19.86;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2992,339,0 chrXIII 21105 . T C 2985 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=20.87;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3018,333,0 chrXIII 21121 . T C 2362 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=19.68;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2395,267,0 chrXIII 21124 . G A 2351 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=20.27;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2384,255,0 chrXIII 21130 . C T 2229 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2262,243,0 chrXIII 21139 . A G 1955 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-2.078;QD=18.44;ReadPosRankSum=0.569;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1988,219,0 chrXIII 21154 . G A 1911 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1944,207,0 chrXIII 21157 . A G 1791 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.367;QD=16.28;ReadPosRankSum=2.936;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,107:110:99:1824,204,0 chrXIII 21163 . A G 1590 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1623,180,0 chrXIII 21175 . A G 1429 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1462,162,0 chrXIII 21211 . G A 1293 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=18.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1326,141,0 chrXIII 21229 . A G 1330 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;MQRankSum=1.342;QD=18.73;ReadPosRankSum=1.683;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1363,153,0 chrXIII 21231 . A G 1362 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=19.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1395,153,0 chrXIII 21241 . A G 1292 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;MQRankSum=-1.914;QD=18.72;ReadPosRankSum=2.379;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1325,150,0 chrXIII 21244 . G A 1346 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;QD=20.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1379,150,0 chrXIII 21253 . G A 1134 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=0;QD=19.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1167,129,0 chrXIII 21269 . A G 865 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;QD=19.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:99:898,102,0 chrXIII 21274 . T A 819 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.98;MQ0=0;QD=18.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:96:852,96,0 chrXIII 21280 . C T 619 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=0;QD=15.87;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:78:652,78,0 chrXIII 21286 . C T 603 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=0;QD=15.87;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:75:636,75,0 chrXIII 21292 . C T 521 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.9559;MLEAC=2;MLEAF=1.00;MQ=25.74;MQ0=0;QD=15.32;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:66:554,66,0 chrXIII 21295 . G A 496 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.9559;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=0;QD=15.50;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:63:529,63,0 chrXIII 21298 . T C 405 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=1.9559;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=12.66;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:51:438,51,0 chrXIII 21301 . A G 389 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.729;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.9559;MLEAC=2;MLEAF=1.00;MQ=25.40;MQ0=0;MQRankSum=-1.166;QD=12.55;ReadPosRankSum=2.050;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:2,29:31:51:422,51,0 chrXIII 21307 . T C 269 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;QD=12.23;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:36:302,36,0 chrXIII 21309 . G A 273 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;QD=12.41;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:36:306,36,0 chrXIII 21310 . T C 260 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;QD=11.82;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:36:293,36,0 chrXIII 21316 . A G 209 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=29;Dels=0.00;FS=3.163;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.97;MQ0=0;MQRankSum=0.538;QD=7.21;ReadPosRankSum=1.614;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:1,28:29:30:242,30,0 chrXIII 21319 . G A 275 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=0;QD=9.17;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:36:308,36,0 chrXIII 21328 . A G 188.01 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=5.53;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:27:221,27,0 chrXIII 21331 . G A 236 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.11;MQ0=0;QD=6.94;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:33:269,33,0 chrXIII 21334 . T C 236 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.84;MQ0=0;MQRankSum=-1.041;QD=6.38;ReadPosRankSum=2.317;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:2,35:37:33:269,33,0 chrXIII 21337 . G C 284 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.96;MQ0=0;QD=7.47;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:39:317,39,0 chrXIII 21345 . G C 297 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.48;MQ0=0;QD=6.46;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:39:330,39,0 chrXIII 21370 . A G 437 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=0;QD=7.95;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:57:470,57,0 chrXIII 21375 . C T 462 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=0;QD=7.70;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:57:495,57,0 chrXIII 21391 . A G 439 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;QD=6.36;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:54:472,54,0 chrXIII 21408 . G A 457 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=6.92;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:54:490,54,0 chrXIII 21409 . T C 463 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;MQRankSum=0.998;QD=6.81;ReadPosRankSum=2.377;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:2,66:68:57:496,57,0 chrXIII 21424 . A G 362 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=5.25;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:45:395,45,0 chrXIII 21430 . A G 357 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=6.05;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:42:390,42,0 chrXIII 21436 . G A 354 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=5.80;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:42:387,42,0 chrXIII 21439 . G A 350 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=5.38;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:42:383,42,0 chrXIII 21454 . T A 378 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.668;QD=5.25;ReadPosRankSum=2.381;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:2,70:72:45:411,45,0 chrXIII 21463 . A G 459 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.74;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:54:492,54,0 chrXIII 21478 . C A 746 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:84:779,84,0 chrXIII 21480 . A C 728 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:84:761,84,0 chrXIII 21490 . A G 730 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,91:91:84:763,84,0 chrXIII 21496 . A G 720 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:81:753,81,0 chrXIII 21523 . A G 750 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;MQRankSum=-1.693;QD=8.43;ReadPosRankSum=1.693;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:90:783,90,0 chrXIII 21525 . A T 753 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=8.37;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:87:786,87,0 chrXIII 21531 . C T 1048 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=9.98;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1081,120,0 chrXIII 21547 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=10.92;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1343,153,0 chrXIII 21556 . A G 1185 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.5879;MLEAC=2;MLEAF=1.00;MQ=31.94;MQ0=0;QD=9.87;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,116:120:99:1218,141,0 chrXIII 21607 . T C 2462 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=0;QD=18.37;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2495,282,0 chrXIII 21881 . C G 1708 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;QD=23.08;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1741,195,0 chrXIII 22318 . A G 4690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.130;DP=216;Dels=0.00;FS=2.929;HaplotypeScore=19.2878;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.502;QD=21.71;ReadPosRankSum=2.415;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4690,519,0 chrXIII 22495 . G A 4476.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.31;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4476,477,0 chrXIII 22567 . G A 4514.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.27;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4514,480,0 chrXIII 22768 . A G 5150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=226;Dels=0.00;FS=10.436;HaplotypeScore=11.4087;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.911;QD=22.79;ReadPosRankSum=2.916;SB=-2.466e+03 GT:AD:DP:GQ:PL 1/1:3,223:226:99:5150,567,0 chrXIII 22888 . G A 4636.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.07;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4636,513,0 chrXIII 22963 . G A 6500.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=23.8745;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.62;SB=-3.336e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:6500,688,0 chrXIII 23029 . A G 4597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=217;Dels=0.00;FS=7.212;HaplotypeScore=11.7165;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.559;QD=21.18;ReadPosRankSum=2.370;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:2,213:217:99:4597,522,0 chrXIII 23187 . T C 5468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=15.7560;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=0.296;QD=22.23;ReadPosRankSum=1.728;SB=-2.859e+03 GT:AD:DP:GQ:PL 1/1:2,243:246:99:5468,600,0 chrXIII 23203 . T C 4729.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.8261;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.50;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4729,519,0 chrXIII 23473 . C T 4586.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.0109;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.52;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4586,489,0 chrXIII 23630 . A C 4516.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=22.69;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4516,486,0 chrXIII 23828 . A G 2755 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.1217;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=19.27;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2788,309,0 chrXIII 23860 . A C 2545 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.81;MQ0=0;QD=17.43;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2578,282,0 chrXIII 23863 . A G 2404 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=0;QD=16.81;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2437,273,0 chrXIII 23864 . G A 2490 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=0;QD=17.41;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2523,270,0 chrXIII 23876 . G A 2896 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.01;FS=0.000;HaplotypeScore=132.0042;MLEAC=2;MLEAF=1.00;MQ=37.50;MQ0=0;QD=17.99;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2929,312,0 chrXIII 24034 . C T 3725.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=25.69;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3725,388,0 chrXIII 24106 . C G 3406.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.6409;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=23.33;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3406,369,0 chrXIII 24134 . A T 4007.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.0817;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=25.36;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:4007,424,0 chrXIII 24474 . G T 6537.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=13.0960;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.35;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:0,280:280:99:6537,682,0 chrXIII 24556 . T G 4723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=236;Dels=0.00;FS=10.149;HaplotypeScore=13.8588;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;MQRankSum=0.632;QD=20.01;ReadPosRankSum=2.970;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:3,229:236:99:4723,522,0 chrXIII 24568 . G A 4401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=223;Dels=0.00;FS=3.440;HaplotypeScore=4.3820;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=-0.412;QD=19.74;ReadPosRankSum=-0.163;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:4401,483,0 chrXIII 24592 . T C 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=203;Dels=0.00;FS=6.806;HaplotypeScore=3.1026;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;MQRankSum=-1.034;QD=18.30;ReadPosRankSum=2.389;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:3715,405,0 chrXIII 24595 . T C 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=203;Dels=0.00;FS=3.390;HaplotypeScore=3.9348;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=1.544;QD=17.45;ReadPosRankSum=1.698;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:3542,399,0 chrXIII 24637 . A G 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-0.438;QD=17.24;ReadPosRankSum=1.713;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,181:185:99:3222,363,0 chrXIII 24712 . C A 5150.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.4013;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.73;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5150,538,0 chrXIII 24775 . C T 4870.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=23.30;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4870,519,0 chrXIII 24787 . A G 4223.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=21.88;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4223,474,0 chrXIII 24997 . T C 4722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.452;QD=23.26;ReadPosRankSum=1.698;SB=-2.477e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4722,513,0 chrXIII 25021 . C A 4609.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=20.86;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4609,481,0 chrXIII 25025 . A G 4206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=234;Dels=0.00;FS=3.761;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;MQRankSum=-0.825;QD=17.97;ReadPosRankSum=1.658;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:1,232:234:99:4206,465,0 chrXIII 25114 . T A 6401.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=17.7045;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.25;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:6401,685,0 chrXIII 25168 . G A 5610.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=11.1632;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.18;SB=-2.986e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5610,595,0 chrXIII 25294 . A G 6912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.361;DP=315;Dels=0.00;FS=8.300;HaplotypeScore=23.1643;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.596;QD=21.94;ReadPosRankSum=3.411;SB=-3.195e+03 GT:AD:DP:GQ:PL 1/1:4,307:315:99:6912,771,0 chrXIII 26434 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.61;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2540,270,0 chrXIII 26589 . A T 568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=39.1249;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=0.347;QD=13.85;ReadPosRankSum=1.646;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:66:601,66,0 chrXIII 26706 . T C 575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=8.3297;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=0.743;QD=15.97;ReadPosRankSum=1.535;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:1,34:36:66:608,66,0 chrXIII 26922 . A C 3442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=147;Dels=0.00;FS=5.932;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.920;QD=23.42;ReadPosRankSum=1.708;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3442,381,0 chrXIII 27948 . G A 2602 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.5056;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.55;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2635,282,0 chrXIII 28623 . T C 4107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.584;QD=23.47;ReadPosRankSum=1.712;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4107,453,0 chrXIII 28695 . C T 3795.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.2686;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.72;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3795,402,0 chrXIII 28764 . A T 4568.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.4676;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.55;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4568,489,0 chrXIII 28854 . G C 3765.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.7826;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.15;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3765,420,0 chrXIII 29616 . T A 4068.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.2773;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.75;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4068,450,0 chrXIII 29721 . C T 3568.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.0190;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.37;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3568,384,0 chrXIII 29750 . C T 4181.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.2228;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.24;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4181,442,0 chrXIII 29779 . T C 3716.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.98;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3716,411,0 chrXIII 29826 . C T 3989.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=15.5244;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.41;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3989,421,0 chrXIII 29994 . T G 4464.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.2215;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.89;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4464,492,0 chrXIII 30303 . T C 4108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=181;Dels=0.00;FS=4.771;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.443;QD=22.70;ReadPosRankSum=1.694;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4108,462,0 chrXIII 30379 . T A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3972,418,0 chrXIII 30523 . C T 3627.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2737;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.71;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3627,393,0 chrXIII 30585 . G C 4087.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=24.04;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4087,453,0 chrXIII 30827 . A G 4028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=1.079;QD=23.02;ReadPosRankSum=1.673;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4028,447,0 chrXIII 30836 . G A 3868.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=24.02;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3868,405,0 chrXIII 31447 . T C 4385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=3.136;HaplotypeScore=6.7250;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.129;QD=25.06;ReadPosRankSum=1.692;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4385,483,0 chrXIII 31828 . G A 3593.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=10.0478;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=26.04;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3593,375,0 chrXIII 31874 . A G 2720 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2753,300,0 chrXIII 31978 . A G 2873 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.81;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2906,315,0 chrXIII 31996 . C T 2732 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.24;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2765,294,0 chrXIII 32108 . T C 2586 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.1226;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.69;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2619,288,0 chrXIII 32247 . C T 4453.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.74;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4453,474,0 chrXIII 32324 . T C 4188.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.93;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:4188,453,0 chrXIII 32346 . G A 4349.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.5130;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.51;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4349,465,0 chrXIII 32379 . T G 4291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.468;QD=23.19;ReadPosRankSum=1.713;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4291,462,0 chrXIII 32504 . G A 4800.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.0313;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.26;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4800,508,0 chrXIII 32693 . C T 4050.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.9664;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.68;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4050,432,0 chrXIII 32868 . G A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.75;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3563,384,0 chrXIII 33068 . A T 3804.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.458;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.962;QD=24.86;ReadPosRankSum=1.709;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3804,397,0 chrXIII 33836 . G A 2872 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.02;FS=0.000;HaplotypeScore=8.1753;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.92;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2905,315,0 chrXIII 34174 . G A 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.210;DP=127;Dels=0.00;FS=3.222;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.045;QD=23.71;ReadPosRankSum=-0.027;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3044,301,0 chrXIII 34267 . C T 5227.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=15.1718;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.43;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5227,553,0 chrXIII 34371 . C T 4526.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.33;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4526,486,0 chrXIII 34473 . T G 5894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.278;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.209;QD=22.16;ReadPosRankSum=2.431;SB=-3.362e+03 GT:AD:DP:GQ:PL 1/1:2,262:266:99:5894,625,0 chrXIII 34777 . G A 3814.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.84;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3814,400,0 chrXIII 34804 . C A 3949.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.96;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3949,420,0 chrXIII 35547 . C T 3448.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.99;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3448,363,0 chrXIII 35559 . C G 3424.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.53;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3424,384,0 chrXIII 35592 . T C 3555.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.16;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3555,396,0 chrXIII 35651 . C T 3449.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.7565;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3449,358,0 chrXIII 35720 . T A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.98;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3837,411,0 chrXIII 35874 . C T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3283,348,0 chrXIII 36081 . A G 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=170;Dels=0.00;FS=4.217;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.297;QD=24.41;ReadPosRankSum=1.712;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4150,462,0 chrXIII 36261 . G A 5166.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.60;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5166,564,0 chrXIII 36440 . T C 4795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=206;Dels=0.00;FS=3.390;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.606;QD=23.28;ReadPosRankSum=1.715;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:1,202:206:99:4795,528,0 chrXIII 36544 . T C 4073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=180;Dels=0.00;FS=8.193;HaplotypeScore=13.7241;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.420;QD=22.63;ReadPosRankSum=2.395;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:4073,450,0 chrXIII 36831 . A G 2554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=-0.979;QD=21.83;ReadPosRankSum=1.702;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:2587,285,0 chrXIII 36940 . G A 3580.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.3698;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.25;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3580,393,0 chrXIII 37053 . T C 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.693;QD=23.89;ReadPosRankSum=2.376;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3234,363,0 chrXIII 38744 . G T 4033.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.30;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4033,429,0 chrXIII 39077 . G A 2823 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.55;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2856,306,0 chrXIII 39438 . G A 5236.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:5236,550,0 chrXIII 39539 . T C 5945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;DP=251;Dels=0.00;FS=8.019;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.018;QD=23.69;ReadPosRankSum=3.292;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:4,244:251:99:5945,648,0 chrXIII 41051 . G T 5139.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.95;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5139,532,0 chrXIII 41832 . A T 2999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-1.164;QD=23.25;ReadPosRankSum=1.705;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3032,315,0 chrXIII 41843 . A G 2721 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.77;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2754,309,0 chrXIII 42835 . G A 3314.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.54;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3314,354,0 chrXIII 43165 . A G 3635.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.1964;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3635,411,0 chrXIII 43624 . T G 3810.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=173;Dels=0.00;FS=6.201;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.955;QD=22.02;ReadPosRankSum=2.406;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:2,169:173:99:3810,426,0 chrXIII 44717 . C T 3091 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5917;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.08;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3124,327,0 chrXIII 45254 . A G 6440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=15.4888;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.860;QD=23.08;ReadPosRankSum=1.707;SB=-3.144e+03 GT:AD:DP:GQ:PL 1/1:1,277:279:99:6440,702,0 chrXIII 45369 . A G 8407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=345;Dels=0.00;FS=4.500;HaplotypeScore=18.9100;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.244;QD=24.37;ReadPosRankSum=1.722;SB=-3.178e+03 GT:AD:DP:GQ:PL 1/1:1,340:345:99:8407,928,0 chrXIII 45656 . G A 5221.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=8.8544;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.31;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5221,553,0 chrXIII 45743 . G A 4611.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.38;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4611,504,0 chrXIII 45947 . A G 969 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.170;QD=19.00;ReadPosRankSum=1.664;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1002,114,0 chrXIII 46009 . C T 1330 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=25.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1363,147,0 chrXIII 46074 . G A 2476 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2509,264,0 chrXIII 46256 . C G 3543.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.16;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3543,387,0 chrXIII 46362 . G C 3457.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3457,375,0 chrXIII 46481 . G A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.0261;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.82;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3376,357,0 chrXIII 46758 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.6654;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3399,366,0 chrXIII 47087 . A G 6235.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=19.7978;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.89;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,260:261:99:6235,687,0 chrXIII 47127 . T C 6354.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=16.2633;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.89;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:6354,705,0 chrXIII 47191 . C T 6617.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=15.0424;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.42;SB=-3.570e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:6617,703,0 chrXIII 47331 . C T 7732.01 PASS AC=2;AF=1.00;AN=2;DP=333;Dels=0.00;FS=0.000;HaplotypeScore=17.5890;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.22;SB=-4.400e+03 GT:AD:DP:GQ:PL 1/1:0,333:333:99:7732,829,0 chrXIII 47361 . A G 6752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.030;DP=304;Dels=0.00;FS=19.356;HaplotypeScore=17.4445;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.753;QD=22.21;ReadPosRankSum=4.153;SB=-3.651e+03 GT:AD:DP:GQ:PL 1/1:6,296:304:99:6752,730,0 chrXIII 47781 . A C 3165 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.1410;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.13;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3198,348,0 chrXIII 47811 . A G 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=147;Dels=0.00;FS=7.539;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.647;QD=20.76;ReadPosRankSum=2.399;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3085,342,0 chrXIII 48342 . C T 2572 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.61;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2605,279,0 chrXIII 48378 . G A 2881 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=20.15;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2914,309,0 chrXIII 48393 . G C 2521 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.9117;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=19.10;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2554,279,0 chrXIII 48814 . A G 3073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=5.012;HaplotypeScore=9.0897;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.187;QD=23.64;ReadPosRankSum=1.705;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3106,342,0 chrXIII 48891 . C T 4002.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.8197;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.33;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4002,429,0 chrXIII 49150 . C T 2986 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.33;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3019,327,0 chrXIII 49588 . C T 4091.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,159:161:99:4091,430,0 chrXIII 50556 . A G 3589.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.8558;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.24;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3589,408,0 chrXIII 50646 . C T 4608.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.81;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4608,498,0 chrXIII 50831 . C T 3663.01 SnpCluster AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=20.46;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3663,387,0 chrXIII 50835 . T C 3530.01 SnpCluster AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=19.94;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3530,396,0 chrXIII 50840 . A G 3507.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;MQRankSum=0.010;QD=20.16;ReadPosRankSum=1.672;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3507,381,0 chrXIII 50880 . T C 3357.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=19.18;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3357,372,0 chrXIII 50890 . C A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=19.03;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3292,357,0 chrXIII 50955 . T G 4249.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=17.4797;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.33;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,205:209:99:4249,462,0 chrXIII 51084 . T C 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.776;QD=24.54;ReadPosRankSum=1.706;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3313,360,0 chrXIII 51141 . A T 4119.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=25.58;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4119,430,0 chrXIII 51256 . C T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.7532;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.36;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3703,402,0 chrXIII 51332 . G A 4372.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.01;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:4372,477,0 chrXIII 51433 . G A 4376.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=18.2639;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.79;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4376,477,0 chrXIII 51596 . A G 5213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.0447;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.838;QD=24.02;ReadPosRankSum=1.684;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:5213,588,0 chrXIII 51951 . T A 4213.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4213,465,0 chrXIII 52482 . G A 2801 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.2695;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.01;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2834,300,0 chrXIII 52494 . A G 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=146;Dels=0.00;FS=6.358;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.415;QD=18.62;ReadPosRankSum=2.399;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:2752,303,0 chrXIII 52575 . A G 2883 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.74;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2916,318,0 chrXIII 52599 . T C 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=143;Dels=0.00;FS=9.216;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-0.261;QD=18.97;ReadPosRankSum=2.838;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:2745,309,0 chrXIII 52683 . G A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.59;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3822,405,0 chrXIII 53235 . T C 3939.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.7634;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.45;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3939,441,0 chrXIII 53276 . C G 3673.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.65;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3673,402,0 chrXIII 53532 . G A 2278 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=18.67;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2311,252,0 chrXIII 53537 . T C 2090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.556;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-1.214;QD=16.33;ReadPosRankSum=1.650;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2123,231,0 chrXIII 53825 . C A 2495 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=15.03;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:2528,267,0 chrXIII 53832 . C T 2243 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0785;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=13.19;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2276,246,0 chrXIII 53934 . T C 3896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=181;Dels=0.00;FS=2.936;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.981;QD=21.52;ReadPosRankSum=2.395;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3896,429,0 chrXIII 53982 . C G 4256.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.2285;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=23.64;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4256,480,0 chrXIII 54060 . T A 4869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=201;Dels=0.00;FS=4.089;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.520;QD=24.22;ReadPosRankSum=1.715;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4869,517,0 chrXIII 54136 . T C 3890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=3.754;HaplotypeScore=14.1190;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.031;QD=21.73;ReadPosRankSum=1.693;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3890,420,0 chrXIII 54411 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3267,345,0 chrXIII 54679 . C T 1848 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.61;MQ0=0;QD=26.78;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1881,198,0 chrXIII 55152 . A G 3550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.180;DP=158;Dels=0.00;FS=8.462;HaplotypeScore=14.2876;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.139;QD=22.47;ReadPosRankSum=3.336;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:4,153:158:99:3550,387,0 chrXIII 56422 . G C 2534 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.62;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2567,282,0 chrXIII 56748 . T A 1943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.173;DP=89;Dels=0.00;FS=2.819;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-1.730;QD=21.83;ReadPosRankSum=2.311;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1976,207,0 chrXIII 56982 . G A 4745.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.37;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4745,525,0 chrXIII 57620 . G A 1455 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.47;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1488,159,0 chrXIII 58576 . T C 2996 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.03;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3029,333,0 chrXIII 58816 . C T 2010 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.03;FS=0.000;HaplotypeScore=34.1777;MLEAC=2;MLEAF=1.00;MQ=60.95;MQ0=0;QD=17.79;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2043,219,0 chrXIII 60420 . G C 3835.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.43;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3835,414,0 chrXIII 60529 . T C 2974 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3007,330,0 chrXIII 60610 . C T 3362.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.2842;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3362,357,0 chrXIII 60754 . T G 2224 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.7785;MLEAC=2;MLEAF=1.00;MQ=60.03;MQ0=0;QD=20.59;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2257,249,0 chrXIII 61164 . A C 3746.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.27;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3746,408,0 chrXIII 61300 . A G 3737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=160;Dels=0.00;FS=3.004;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.205;QD=23.36;ReadPosRankSum=2.356;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:2,156:160:99:3737,423,0 chrXIII 61663 . T C 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=3.479;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.159;QD=23.15;ReadPosRankSum=1.705;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2973,330,0 chrXIII 61741 . A G 4018.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4018,444,0 chrXIII 62513 . A C 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.5541;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.375;QD=23.38;ReadPosRankSum=1.630;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:3260,360,0 chrXIII 62953 . T C 4301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=175;Dels=0.00;FS=2.772;HaplotypeScore=14.3017;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.135;QD=24.58;ReadPosRankSum=2.421;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:2,171:175:99:4301,471,0 chrXIII 63206 . G A 4401.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.80;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4401,477,0 chrXIII 63358 . C A 3087 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3120,327,0 chrXIII 63443 . G A 2707 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.94;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2740,294,0 chrXIII 63473 . G A 2540 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.99;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2573,282,0 chrXIII 63644 . T G 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=105;Dels=0.00;FS=3.184;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.460;QD=21.93;ReadPosRankSum=1.664;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2336,261,0 chrXIII 63845 . C T 3031 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:3064,321,0 chrXIII 63905 . C T 3099 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5134;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3132,339,0 chrXIII 64188 . G C 2008 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.59;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2041,225,0 chrXIII 64223 . A G 1945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=3.222;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.082;QD=23.15;ReadPosRankSum=1.691;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1978,210,0 chrXIII 64354 . C T 1833 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.35;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1866,204,0 chrXIII 64394 . T A 1894 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.28;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1927,204,0 chrXIII 64550 . C T 1593 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.96;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1626,171,0 chrXIII 64563 . G A 1733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.357;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-1.649;QD=20.39;ReadPosRankSum=0.939;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1766,163,0 chrXIII 64643 . G A 2571 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.21;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2604,270,0 chrXIII 64972 . C A 3114 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3147,336,0 chrXIII 65033 . A T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.24;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3393,372,0 chrXIII 65232 . A G 2571 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.16;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2604,288,0 chrXIII 65285 . G A 2753 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.75;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2786,300,0 chrXIII 65314 . C A 2790 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6942;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.14;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2823,297,0 chrXIII 65366 . G A 2615 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.56;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2648,279,0 chrXIII 65417 . C T 2923 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.66;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2956,315,0 chrXIII 65426 . A T 2598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=117;Dels=0.00;FS=9.847;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.074;QD=22.21;ReadPosRankSum=2.387;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2631,282,0 chrXIII 65498 . T C 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-0.445;QD=19.40;ReadPosRankSum=1.640;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2225,243,0 chrXIII 65513 . C T 2317 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=19.15;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2350,249,0 chrXIII 65534 . A G 2353 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=17.83;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2386,261,0 chrXIII 66018 . T C 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=152;Dels=0.00;FS=6.094;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-0.127;QD=21.14;ReadPosRankSum=2.847;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:3,148:152:99:3246,354,0 chrXIII 66032 . C T 3630.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=23.88;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3630,378,0 chrXIII 66092 . A G 3152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=0.079;QD=20.47;ReadPosRankSum=1.709;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3185,351,0 chrXIII 66227 . C T 2977 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=22.22;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3010,318,0 chrXIII 66284 . C T 2427 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=22.90;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2460,258,0 chrXIII 66329 . T G 2205 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.97;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2238,246,0 chrXIII 66379 . G A 2532 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.58;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2565,270,0 chrXIII 66524 . A G 2734 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.10;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2767,318,0 chrXIII 66525 . T C 2845 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.77;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2878,318,0 chrXIII 66659 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.86;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3256,351,0 chrXIII 67133 . C T 4407.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4407,463,0 chrXIII 67286 . G A 4879.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.52;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4879,517,0 chrXIII 67415 . T C 4482.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.41;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4482,492,0 chrXIII 68035 . A G 1922 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.02;MQ0=0;QD=17.01;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1955,213,0 chrXIII 68036 . T A 2003 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=4.887;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=32.98;MQ0=0;MQRankSum=0.972;QD=17.57;ReadPosRankSum=1.671;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2036,213,0 chrXIII 68042 . G A 1792 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=0;QD=15.72;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1825,192,0 chrXIII 68045 . T C 1738 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=4.421;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=0;MQRankSum=-0.364;QD=14.61;ReadPosRankSum=1.703;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1771,195,0 chrXIII 68049 . T A 1666 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.46;MQ0=0;QD=13.66;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1699,183,0 chrXIII 68072 . C T 2011 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=16.35;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2044,216,0 chrXIII 68077 . A G 1699 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=13.70;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1732,192,0 chrXIII 68110 . A T 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=92.0277;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=0;MQRankSum=1.528;QD=14.20;ReadPosRankSum=1.703;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1723,183,0 chrXIII 68117 . T C 1554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=124;Dels=0.03;FS=0.000;HaplotypeScore=135.8965;MLEAC=2;MLEAF=1.00;MQ=34.60;MQ0=0;MQRankSum=-2.589;QD=12.53;ReadPosRankSum=2.942;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:1587,177,0 chrXIII 68270 . A G 3516.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=23.92;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3516,384,0 chrXIII 68496 . C T 6786.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=22.7405;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=22.03;SB=-3.038e+03 GT:AD:DP:GQ:PL 1/1:0,308:308:99:6786,738,0 chrXIII 68665 . C T 10825.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=446;Dels=0.00;FS=3.739;HaplotypeScore=30.5179;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.291;QD=24.27;ReadPosRankSum=0.268;SB=-4.880e+03 GT:AD:DP:GQ:PL 1/1:1,444:446:99:10825,1153,0 chrXIII 68826 . T C 8528.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=414;Dels=0.00;FS=7.798;HaplotypeScore=26.1277;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.601;QD=20.60;ReadPosRankSum=2.396;SB=-4.438e+03 GT:AD:DP:GQ:PL 1/1:2,412:414:99:8528,954,0 chrXIII 68960 . G A 8579.01 PASS AC=2;AF=1.00;AN=2;DP=358;Dels=0.00;FS=0.000;HaplotypeScore=18.1550;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.96;SB=-4.804e+03 GT:AD:DP:GQ:PL 1/1:0,358:358:99:8579,907,0 chrXIII 69025 . C T 6978.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=12.3198;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.31;SB=-3.616e+03 GT:AD:DP:GQ:PL 1/1:0,286:287:99:6978,733,0 chrXIII 69113 . A G 7207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=329;Dels=0.00;FS=5.936;HaplotypeScore=13.9859;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.680;QD=21.91;ReadPosRankSum=2.966;SB=-3.819e+03 GT:AD:DP:GQ:PL 1/1:3,323:329:99:7207,789,0 chrXIII 70163 . A G 3919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.254;QD=22.39;ReadPosRankSum=1.712;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3919,432,0 chrXIII 70824 . C A 7512.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=20.1828;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.49;SB=-4.266e+03 GT:AD:DP:GQ:PL 1/1:1,331:334:99:7512,802,0 chrXIII 71137 . A G 4625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=234;Dels=0.00;FS=2.661;HaplotypeScore=22.9862;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.553;QD=19.76;ReadPosRankSum=2.386;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:2,231:234:99:4625,510,0 chrXIII 71382 . T C 3050 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=18.48;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3083,342,0 chrXIII 71397 . T C 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.086;DP=170;Dels=0.00;FS=7.568;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.516;QD=17.01;ReadPosRankSum=2.377;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:2925,296,0 chrXIII 71559 . G A 4663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.131;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.813;QD=23.67;ReadPosRankSum=1.043;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4663,475,0 chrXIII 71613 . A G 4411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.633;DP=196;Dels=0.00;FS=21.115;HaplotypeScore=21.0755;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.927;QD=22.51;ReadPosRankSum=3.729;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:5,190:196:99:4411,483,0 chrXIII 71867 . A T 4853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.394;QD=24.02;ReadPosRankSum=1.715;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4853,508,0 chrXIII 72351 . C A 4681.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.8123;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.98;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4681,510,0 chrXIII 72441 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.22;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3826,417,0 chrXIII 72474 . A G 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.3990;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.167;QD=21.30;ReadPosRankSum=1.709;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3164,348,0 chrXIII 72510 . C T 2325 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.37;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2358,249,0 chrXIII 72525 . G A 2486 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=18.55;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2519,270,0 chrXIII 72588 . G A 2980 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=19.48;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3013,327,0 chrXIII 72591 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=20.41;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3136,327,0 chrXIII 72609 . C T 3075 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=20.50;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3108,333,0 chrXIII 72669 . G A 2704 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.96;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2737,300,0 chrXIII 72936 . G A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.70;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3299,340,0 chrXIII 72996 . G A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.60;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3327,351,0 chrXIII 73242 . T G 6027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.5843;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.675;QD=24.80;ReadPosRankSum=1.704;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:1,242:243:99:6027,655,0 chrXIII 73368 . G A 6165.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=15.2180;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.37;SB=-3.056e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:6165,652,0 chrXIII 73503 . A G 6422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.845;QD=21.92;ReadPosRankSum=1.708;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:1,292:293:99:6422,705,0 chrXIII 73701 . C T 4159.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.3770;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.22;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4159,447,0 chrXIII 73993 . C T 1438 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.46;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1471,156,0 chrXIII 74060 . T C 2181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=1.469;QD=23.71;ReadPosRankSum=1.694;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2214,240,0 chrXIII 74069 . T G 2202 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=23.43;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2235,243,0 chrXIII 74124 . T C 1891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.701;QD=22.51;ReadPosRankSum=1.691;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1924,210,0 chrXIII 74173 . C T 2302 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=24.49;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2335,252,0 chrXIII 74186 . G T 2430 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=23.59;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2463,258,0 chrXIII 74215 . A T 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.351;QD=21.28;ReadPosRankSum=1.700;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2353,249,0 chrXIII 74338 . A G 2283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1905;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=1.150;QD=19.02;ReadPosRankSum=1.616;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2316,255,0 chrXIII 74346 . C T 2417 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.48;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2450,258,0 chrXIII 74393 . C T 2489 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.40;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2522,276,0 chrXIII 74436 . C T 3171 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.39;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3204,345,0 chrXIII 74488 . C T 3128 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.44;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3161,339,0 chrXIII 74632 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=16.2510;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.05;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2740,306,0 chrXIII 74704 . A G 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.776;DP=131;Dels=0.00;FS=5.460;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.682;QD=21.94;ReadPosRankSum=2.946;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:3,127:131:99:2907,312,0 chrXIII 75370 . C A 3744.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.31;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3744,396,0 chrXIII 75396 . T C 3421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.749;QD=22.96;ReadPosRankSum=1.709;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3421,372,0 chrXIII 76194 . A C 5547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=241;Dels=0.00;FS=4.475;HaplotypeScore=13.5865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.855;QD=23.02;ReadPosRankSum=1.675;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:5547,615,0 chrXIII 77030 . G A 3154 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.61;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3187,333,0 chrXIII 78658 . T C 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.5123;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.800;QD=23.78;ReadPosRankSum=1.708;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3448,375,0 chrXIII 79761 . T G 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=177;Dels=0.00;FS=3.967;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=0.245;QD=21.41;ReadPosRankSum=1.713;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3790,417,0 chrXIII 79876 . T G 4666.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.82;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4666,504,0 chrXIII 82027 . A G 2441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.726;QD=19.53;ReadPosRankSum=1.648;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2474,282,0 chrXIII 82308 . T A 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.145;QD=22.79;ReadPosRankSum=2.538;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:3373,360,0 chrXIII 82914 . C T 2804 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8128;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2837,297,0 chrXIII 85300 . T C 3727.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.8345;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.59;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,154:158:99:3727,408,0 chrXIII 88808 . A T 2349 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2382,255,0 chrXIII 89001 . C T 2446 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2479,264,0 chrXIII 89321 . T C 2076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.458;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-0.532;QD=20.55;ReadPosRankSum=1.698;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2109,228,0 chrXIII 89325 . A C 2081 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.20;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2114,234,0 chrXIII 89876 . C T 3137 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3170,339,0 chrXIII 90285 . T C 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.337;QD=23.21;ReadPosRankSum=1.686;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3482,387,0 chrXIII 90476 . G A 5169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.315;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.9799;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.102;QD=23.28;ReadPosRankSum=1.716;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:5169,540,0 chrXIII 91086 . A G 4567.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4567,510,0 chrXIII 91485 . G A 2065 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.2268;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.67;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2098,222,0 chrXIII 91492 . A G 1670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.463;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.8308;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.589;QD=15.90;ReadPosRankSum=1.698;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:1703,192,0 chrXIII 93961 . A G 6498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=6.0470;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-1.235;QD=22.72;ReadPosRankSum=1.720;SB=-3.563e+03 GT:AD:DP:GQ:PL 1/1:1,285:286:99:6498,717,0 chrXIII 93980 . T C 6497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=296;Dels=0.00;FS=6.399;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.755;QD=21.95;ReadPosRankSum=2.433;SB=-3.550e+03 GT:AD:DP:GQ:PL 1/1:2,292:296:99:6497,729,0 chrXIII 94366 . C T 282 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;QD=14.84;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,18:19:36:315,36,0 chrXIII 94474 . C T 2946 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.40;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2979,324,0 chrXIII 94572 . T C 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.322;QD=26.15;ReadPosRankSum=2.411;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:2,124:126:99:3295,357,0 chrXIII 94695 . C T 4494.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.16;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4494,478,0 chrXIII 94898 . G C 3954.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3954,435,0 chrXIII 95242 . A G 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.2272;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.151;QD=23.62;ReadPosRankSum=1.708;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3401,381,0 chrXIII 95343 . A C 2949 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=22.01;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2982,333,0 chrXIII 95796 . C T 1227 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1260,132,0 chrXIII 97432 . A G 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.2698;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.378;QD=22.33;ReadPosRankSum=1.631;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:3115,342,0 chrXIII 99579 . G A 1491 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=18.87;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1524,165,0 chrXIII 99676 . G A 1740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.300;QD=22.60;ReadPosRankSum=0.208;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1773,171,0 chrXIII 100909 . G A 5760.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.80;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5760,610,0 chrXIII 100917 . T A 5445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=239;Dels=0.00;FS=3.334;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.227;QD=22.78;ReadPosRankSum=1.659;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:5445,583,0 chrXIII 101469 . A T 5853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=261;Dels=0.00;FS=3.216;HaplotypeScore=22.8130;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.372;QD=22.43;ReadPosRankSum=1.705;SB=-3.177e+03 GT:AD:DP:GQ:PL 1/1:1,260:261:99:5853,636,0 chrXIII 101716 . T C 4404.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.1528;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.80;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4404,492,0 chrXIII 102007 . G A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.99;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3624,381,0 chrXIII 102269 . A G 4332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=193;Dels=0.00;FS=5.159;HaplotypeScore=7.1349;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.096;QD=22.45;ReadPosRankSum=3.278;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:4,188:192:99:4332,483,0 chrXIII 102554 . C T 5656.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.94;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5656,601,0 chrXIII 102794 . C T 3720.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.38;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3720,408,0 chrXIII 103133 . T C 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.9755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.637;QD=22.29;ReadPosRankSum=1.656;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:3109,342,0 chrXIII 103247 . T C 2376 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.00;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2409,261,0 chrXIII 103250 . A T 2228 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=20.82;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2261,246,0 chrXIII 105088 . T C 4255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=4.491;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.154;QD=23.25;ReadPosRankSum=1.713;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,179:183:99:4255,468,0 chrXIII 105255 . T C 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.143;QD=20.78;ReadPosRankSum=1.709;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3087,336,0 chrXIII 105317 . C A 2834 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.99;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2867,318,0 chrXIII 106249 . A G 3669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.638;QD=24.62;ReadPosRankSum=1.709;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3669,405,0 chrXIII 106723 . G A 2255 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2288,249,0 chrXIII 107242 . C T 3137 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.57;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3170,342,0 chrXIII 107248 . C T 3072 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.26;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3105,330,0 chrXIII 107332 . T C 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.9203;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.049;QD=24.38;ReadPosRankSum=1.163;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3462,387,0 chrXIII 107365 . T C 3549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.709;QD=23.66;ReadPosRankSum=1.662;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3549,393,0 chrXIII 107957 . C T 4282.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.6282;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4282,456,0 chrXIII 108502 . C T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.66;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3444,381,0 chrXIII 108949 . G A 5914.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=13.5865;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.38;SB=-2.952e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5914,634,0 chrXIII 109860 . C A 3768.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.40;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3768,396,0 chrXIII 112670 . T C 4466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=183;Dels=0.00;FS=2.965;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.503;QD=24.40;ReadPosRankSum=2.382;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4466,486,0 chrXIII 112706 . C T 4894.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.84;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4894,514,0 chrXIII 113160 . T C 5189.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=213;Dels=0.00;FS=3.700;HaplotypeScore=14.5787;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.240;QD=24.36;ReadPosRankSum=1.683;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:5189,567,0 chrXIII 113641 . C T 3524.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3524,384,0 chrXIII 113691 . G T 3039 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3072,327,0 chrXIII 114162 . A T 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=3.586;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.266;QD=25.52;ReadPosRankSum=1.682;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3496,369,0 chrXIII 114553 . C T 7396.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=29.3047;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-2.964e+03 GT:AD:DP:GQ:PL 1/1:0,308:309:99:7396,793,0 chrXIII 114631 . A G 6880.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=19.0765;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.05;SB=-3.341e+03 GT:AD:DP:GQ:PL 1/1:0,307:312:99:6880,759,0 chrXIII 114817 . G T 5179.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.62;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5179,567,0 chrXIII 114933 . T C 4165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=3.419;HaplotypeScore=11.3375;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=0.856;QD=23.40;ReadPosRankSum=1.596;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4165,462,0 chrXIII 114963 . G A 3652.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.7353;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=20.99;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3652,384,0 chrXIII 114970 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.7912;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.47;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,170:175:99:3266,366,0 chrXIII 117072 . A G 3777.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3777,417,0 chrXIII 117651 . A G 4540.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.25;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4540,513,0 chrXIII 117694 . C T 4264.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.6068;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4264,451,0 chrXIII 119628 . C T 3793.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.07;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3793,397,0 chrXIII 119630 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.59;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3742,394,0 chrXIII 121619 . A G 3431.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.14;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3431,372,0 chrXIII 121779 . C A 3933.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.0631;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.41;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3933,429,0 chrXIII 121847 . G A 3644.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3644,393,0 chrXIII 122094 . G T 3286.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.81;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3286,345,0 chrXIII 122298 . G T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.27;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3518,381,0 chrXIII 124283 . C G 4332.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.45;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,196:202:99:4332,483,0 chrXIII 124455 . T C 1972 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.09;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2005,219,0 chrXIII 124690 . G A 2144 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2177,240,0 chrXIII 124849 . C A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.5123;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.78;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3425,375,0 chrXIII 125244 . A G 4340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.5554;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-1.001;QD=23.98;ReadPosRankSum=1.713;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4340,474,0 chrXIII 125255 . G C 4110.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.7085;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.10;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4110,444,0 chrXIII 125372 . C T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.08;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3623,379,0 chrXIII 125874 . T C 4183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-0.195;QD=22.25;ReadPosRankSum=1.695;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4183,459,0 chrXIII 125889 . T A 4288.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.96;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4288,451,0 chrXIII 126432 . G A 3635.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.30;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3635,381,0 chrXIII 126625 . C T 2815 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2848,303,0 chrXIII 126663 . C T 2932 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.21;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2965,312,0 chrXIII 127093 . T C 3978.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,171:175:99:3978,447,0 chrXIII 127265 . A G 4069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;DP=192;Dels=0.00;FS=9.900;HaplotypeScore=14.5122;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.403;QD=21.19;ReadPosRankSum=2.930;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:3,184:192:99:4069,450,0 chrXIII 129009 . C T 3816.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.0128;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3816,394,0 chrXIII 130581 . A G 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.961;DP=179;Dels=0.00;FS=14.472;HaplotypeScore=13.0509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.923;QD=22.41;ReadPosRankSum=4.155;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:6,172:179:99:4011,444,0 chrXIII 130892 . A G 3991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.610;DP=179;Dels=0.00;FS=12.854;HaplotypeScore=19.4944;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.458;QD=22.30;ReadPosRankSum=2.904;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:3,175:179:99:3991,444,0 chrXIII 131119 . G T 4751.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.2686;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.50;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4751,516,0 chrXIII 131349 . G T 3557.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.96;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3557,378,0 chrXIII 131423 . A G 4230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.920;QD=22.03;ReadPosRankSum=1.714;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4230,477,0 chrXIII 131785 . T G 2559 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.69;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2592,279,0 chrXIII 131788 . A G 2467 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.73;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2500,273,0 chrXIII 131908 . A G 2814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=13.6827;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.099;QD=22.33;ReadPosRankSum=1.704;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2847,303,0 chrXIII 131951 . A G 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-1.386;QD=22.53;ReadPosRankSum=1.628;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2286,249,0 chrXIII 132039 . G A 2186 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.51;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2219,234,0 chrXIII 132904 . G A 2807 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.6891;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.10;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2840,297,0 chrXIII 132954 . C T 2665 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.58;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2698,288,0 chrXIII 135233 . C A 2563 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=21.01;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2596,279,0 chrXIII 135252 . T C 2219 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=20.17;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2252,246,0 chrXIII 137475 . C T 3759.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=25.23;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3759,402,0 chrXIII 137524 . T C 3094 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=24.36;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3127,348,0 chrXIII 137694 . G A 3949.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=24.68;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3949,412,0 chrXIII 137717 . C T 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=159;Dels=0.00;FS=3.206;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-1.427;QD=22.52;ReadPosRankSum=1.231;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3580,359,0 chrXIII 137720 . G C 3457.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.7633;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=20.95;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3457,372,0 chrXIII 137768 . C A 3284.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.2828;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=19.66;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3284,354,0 chrXIII 137864 . C G 3876.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.40;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3876,426,0 chrXIII 137879 . C T 3670.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=21.72;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3670,390,0 chrXIII 138042 . A G 4601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=3.010;HaplotypeScore=7.1792;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=1.626;QD=23.47;ReadPosRankSum=1.697;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4601,501,0 chrXIII 138053 . C G 4035.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.69;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4035,450,0 chrXIII 138142 . A G 4012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.041;QD=23.60;ReadPosRankSum=1.691;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:4012,432,0 chrXIII 138155 . A G 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=1.044;QD=22.45;ReadPosRankSum=1.711;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3614,402,0 chrXIII 138419 . T C 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=190;Dels=0.00;FS=2.578;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.676;QD=24.07;ReadPosRankSum=2.963;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:3,186:190:99:4574,501,0 chrXIII 138467 . A G 5003.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=9.6329;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.27;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5003,549,0 chrXIII 138725 . T C 4997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=201;Dels=0.00;FS=3.420;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.351;QD=24.86;ReadPosRankSum=1.715;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4997,546,0 chrXIII 138823 . C T 3944.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.1684;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.96;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3944,423,0 chrXIII 140328 . G A 3012 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.4799;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3045,321,0 chrXIII 140418 . G A 3949.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3949,435,0 chrXIII 140712 . C T 5335.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-3.022e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5335,576,0 chrXIII 140828 . G T 4556.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.13;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4556,489,0 chrXIII 140935 . A G 4648.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.13;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4648,522,0 chrXIII 140970 . A G 4938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=224;Dels=0.00;FS=2.952;HaplotypeScore=19.6270;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.970;QD=22.04;ReadPosRankSum=2.428;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:4938,546,0 chrXIII 141369 . A G 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-0.611;QD=21.91;ReadPosRankSum=1.681;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3035,336,0 chrXIII 141422 . A G 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.731;QD=22.15;ReadPosRankSum=1.604;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3045,336,0 chrXIII 141543 . T A 2437 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=6.4099;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=19.34;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2470,273,0 chrXIII 141548 . A G 2209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.002;DP=126;Dels=0.00;FS=7.556;HaplotypeScore=6.5153;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=-0.525;QD=17.53;ReadPosRankSum=4.117;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:6,119:126:99:2242,252,0 chrXIII 141610 . T C 1687 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=17.95;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1720,189,0 chrXIII 141627 . C T 1763 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1368;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.03;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1796,189,0 chrXIII 141894 . G A 2042 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.20;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2075,228,0 chrXIII 142166 . T C 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=169;Dels=0.01;FS=3.306;HaplotypeScore=6.9650;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.529;QD=21.51;ReadPosRankSum=1.628;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3635,399,0 chrXIII 142186 . A G 4284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.415;DP=198;Dels=0.00;FS=9.110;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-1.177;QD=21.64;ReadPosRankSum=3.415;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:4,191:198:99:4284,477,0 chrXIII 142190 . A G 4321.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.98;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4321,474,0 chrXIII 142395 . C T 3576.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=23.53;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3576,390,0 chrXIII 142812 . A G 3775.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.47;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3775,420,0 chrXIII 142824 . G A 3730.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=21.19;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3730,402,0 chrXIII 142918 . T C 4607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=-0.807;QD=23.99;ReadPosRankSum=1.660;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4607,495,0 chrXIII 142984 . G A 4543.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;QD=23.79;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4543,495,0 chrXIII 143466 . A G 2939 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.96;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2972,327,0 chrXIII 143886 . A G 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=3.277;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.402;QD=24.37;ReadPosRankSum=1.711;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4094,450,0 chrXIII 145063 . T C 3890.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.15;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3890,423,0 chrXIII 145373 . A G 3328.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.29;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3328,381,0 chrXIII 146064 . T A 2331 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.03;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2364,249,0 chrXIII 146198 . T C 2654 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2687,291,0 chrXIII 146240 . A G 2950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=8.508;HaplotypeScore=8.4578;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.165;QD=23.05;ReadPosRankSum=2.353;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2983,321,0 chrXIII 146979 . A G 3998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.405;QD=22.09;ReadPosRankSum=1.694;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3998,444,0 chrXIII 147350 . T C 555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;MQRankSum=-1.536;QD=10.47;ReadPosRankSum=1.667;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:1,52:53:66:588,66,0 chrXIII 147354 . G A 602 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6895;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=9.56;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,62:63:69:635,69,0 chrXIII 147583 . A G 3892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.564;QD=22.89;ReadPosRankSum=1.671;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3892,429,0 chrXIII 148721 . C T 3116 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=9.3992;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.05;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3149,333,0 chrXIII 148750 . T A 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=143;Dels=0.00;FS=2.589;HaplotypeScore=11.4006;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.229;QD=23.93;ReadPosRankSum=2.329;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3422,369,0 chrXIII 148820 . C T 2663 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.02;FS=0.000;HaplotypeScore=17.4216;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.80;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2696,291,0 chrXIII 149089 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=149;Dels=0.00;FS=5.592;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.245;QD=22.48;ReadPosRankSum=2.939;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:3349,366,0 chrXIII 149567 . A G 4123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=212;Dels=0.00;FS=6.078;HaplotypeScore=13.7032;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=0.275;QD=19.45;ReadPosRankSum=2.967;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:3,209:212:99:4123,459,0 chrXIII 149583 . A G 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-0.450;QD=18.97;ReadPosRankSum=1.715;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:3945,447,0 chrXIII 149883 . G A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.05;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3487,363,0 chrXIII 150027 . C T 3102 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.62;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3135,327,0 chrXIII 150108 . C T 3174 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3207,336,0 chrXIII 150189 . A G 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=3.784;HaplotypeScore=13.4989;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.872;QD=22.30;ReadPosRankSum=1.708;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3199,354,0 chrXIII 150273 . G A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.7377;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3658,402,0 chrXIII 150312 . C T 4024.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4024,424,0 chrXIII 150402 . G C 3738.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3738,405,0 chrXIII 150480 . A T 4254.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.87;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4254,465,0 chrXIII 150534 . T C 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=165;Dels=0.00;FS=6.827;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.236;QD=24.14;ReadPosRankSum=2.360;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3983,438,0 chrXIII 150893 . A G 3085 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.43;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3118,339,0 chrXIII 150900 . G A 3169 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=20.18;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3202,345,0 chrXIII 150999 . A T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=22.31;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3346,354,0 chrXIII 151003 . T C 3114 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=21.78;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3147,342,0 chrXIII 151059 . C T 2428 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=19.90;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2461,258,0 chrXIII 151065 . T C 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.326;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=-0.030;QD=20.45;ReadPosRankSum=1.641;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2385,261,0 chrXIII 151149 . A G 2047 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.80;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2080,228,0 chrXIII 151185 . G A 2823 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.95;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2856,312,0 chrXIII 151485 . C T 3651.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.18;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3651,387,0 chrXIII 151850 . G A 2833 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2866,312,0 chrXIII 152179 . C T 4626.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.9594;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.48;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4626,484,0 chrXIII 152212 . C A 5061.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=16.0303;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.33;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,204:208:99:5061,535,0 chrXIII 152386 . A C 2582 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=18.5446;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.33;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2615,285,0 chrXIII 152431 . A G 3477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=217;Dels=0.00;FS=2.971;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.006;QD=16.02;ReadPosRankSum=2.380;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:2,212:217:99:3477,372,0 chrXIII 152476 . T G 5263.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=15.4005;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.59;SB=-2.833e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5263,579,0 chrXIII 152766 . T C 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.947;DP=155;Dels=0.00;FS=19.615;HaplotypeScore=22.1661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.012;QD=20.20;ReadPosRankSum=4.138;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:6,145:155:99:3164,348,0 chrXIII 152885 . A G 3679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=160;Dels=0.00;FS=3.024;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.070;QD=22.99;ReadPosRankSum=2.388;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3679,414,0 chrXIII 153040 . G C 3675.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.18;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3675,411,0 chrXIII 153576 . A G 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=170;Dels=0.00;FS=7.818;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.967;QD=23.94;ReadPosRankSum=2.421;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:4070,459,0 chrXIII 154077 . T C 2859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.356;QD=20.28;ReadPosRankSum=1.658;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2892,318,0 chrXIII 154578 . A G 4923.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.58;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4923,537,0 chrXIII 154896 . G C 3163 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.1886;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.60;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3196,342,0 chrXIII 155262 . G A 2743 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.60;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2776,303,0 chrXIII 155263 . G A 2895 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=22.80;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2928,306,0 chrXIII 155265 . G A 2871 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=23.15;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2904,306,0 chrXIII 155649 . G A 4282.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.33;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4282,454,0 chrXIII 155756 . C T 4190.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=177;Dels=0.00;FS=3.879;HaplotypeScore=15.3303;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.557;QD=23.67;ReadPosRankSum=-0.051;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,173:177:99:4190,447,0 chrXIII 155934 . T C 4196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.3638;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.648;QD=23.44;ReadPosRankSum=1.713;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4196,468,0 chrXIII 156195 . G C 6206.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.33;SB=-2.798e+03 GT:AD:DP:GQ:PL 1/1:0,288:291:99:6206,705,0 chrXIII 156210 . A T 6661.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.13;SB=-3.362e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:6661,712,0 chrXIII 156366 . A G 7099.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=19.2708;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.12;SB=-3.471e+03 GT:AD:DP:GQ:PL 1/1:0,305:307:99:7099,783,0 chrXIII 156441 . A G 5836.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=25.0791;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=0.086;QD=22.27;ReadPosRankSum=1.706;SB=-3.069e+03 GT:AD:DP:GQ:PL 1/1:1,260:262:99:5836,648,0 chrXIII 156498 . A G 6089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.331;DP=257;Dels=0.00;FS=12.214;HaplotypeScore=14.0457;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.370;QD=23.69;ReadPosRankSum=3.420;SB=-3.214e+03 GT:AD:DP:GQ:PL 1/1:4,251:257:99:6089,658,0 chrXIII 156612 . C T 4548.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.85;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4548,495,0 chrXIII 156687 . C T 4109.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.1480;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.86;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4109,435,0 chrXIII 157146 . C T 7328.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=26.5840;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.97;SB=-3.887e+03 GT:AD:DP:GQ:PL 1/1:0,319:319:99:7328,822,0 chrXIII 157287 . A C 5763.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=21.2085;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.14;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5763,639,0 chrXIII 157392 . T A 6985.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=26.6602;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.53;SB=-3.758e+03 GT:AD:DP:GQ:PL 1/1:0,310:310:99:6985,757,0 chrXIII 158208 . G T 2738 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.73;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2771,291,0 chrXIII 158463 . A C 1525 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.55;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1558,174,0 chrXIII 158483 . T C 1752 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.75;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1785,195,0 chrXIII 158538 . T C 1416 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.12;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1449,159,0 chrXIII 158604 . T G 1929 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.81;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1962,216,0 chrXIII 158654 . G A 2616 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.0795;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.36;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2649,282,0 chrXIII 158834 . A G 3930.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=23.67;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3930,441,0 chrXIII 158997 . A G 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=36.40;MQ0=0;MQRankSum=-1.775;QD=17.33;ReadPosRankSum=2.426;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:3656,402,0 chrXIII 159005 . A G 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=34.30;MQ0=0;MQRankSum=-2.002;QD=17.02;ReadPosRankSum=2.427;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:3642,390,0 chrXIII 159010 . A G 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=0;MQRankSum=-1.683;QD=16.27;ReadPosRankSum=1.716;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:3416,381,0 chrXIII 159018 . T A 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=194;Dels=0.00;FS=6.346;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.12;MQ0=0;MQRankSum=-1.429;QD=16.51;ReadPosRankSum=1.714;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3236,348,0 chrXIII 159039 . G A 2315 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=14.47;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2348,252,0 chrXIII 159055 . G A 2004 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=14.74;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2037,222,0 chrXIII 159423 . G C 3655.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.76;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3655,396,0 chrXIII 159439 . C T 3653.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.69;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3653,393,0 chrXIII 159727 . T C 2075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.954;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-0.658;QD=18.86;ReadPosRankSum=2.676;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:3,106:110:99:2108,228,0 chrXIII 159728 . T C 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=111;Dels=0.00;FS=6.897;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=0.101;QD=18.85;ReadPosRankSum=2.405;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2125,231,0 chrXIII 159757 . T G 2389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.979;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.491;QD=19.91;ReadPosRankSum=1.703;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2422,267,0 chrXIII 161620 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.097;QD=18.81;ReadPosRankSum=1.712;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3249,360,0 chrXIII 162300 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.444;QD=21.47;ReadPosRankSum=1.710;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3350,366,0 chrXIII 162309 . G A 3227.04 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=20.17;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3260,357,0 chrXIII 162332 . G A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.5594;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.06;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3833,423,0 chrXIII 162419 . T C 7599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=19.6076;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.350;QD=23.82;ReadPosRankSum=2.426;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:2,317:319:99:7599,843,0 chrXIII 162461 . A G 8020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=329;Dels=0.00;FS=6.182;HaplotypeScore=19.7221;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.436;QD=24.38;ReadPosRankSum=1.711;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,327:329:99:8020,883,0 chrXIII 162797 . A G 4061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=225;Dels=0.00;FS=2.810;HaplotypeScore=18.7944;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=0.158;QD=18.05;ReadPosRankSum=2.384;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:4061,450,0 chrXIII 163348 . C G 2544 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2577,282,0 chrXIII 163898 . C T 3833.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.90;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3833,417,0 chrXIII 163913 . A G 3707.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=3.350;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.171;QD=21.18;ReadPosRankSum=1.692;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,172:175:99:3707,402,0 chrXIII 164304 . G A 2245 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.40;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2278,237,0 chrXIII 164648 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=137;Dels=0.00;FS=2.589;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.066;QD=23.60;ReadPosRankSum=2.949;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:3266,360,0 chrXIII 165032 . G T 2749 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.1320;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.50;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2782,291,0 chrXIII 166589 . A C 4278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.4563;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.952;QD=23.38;ReadPosRankSum=1.694;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4278,477,0 chrXIII 166619 . G A 4521.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.55;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4521,480,0 chrXIII 167775 . G A 4118.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.3017;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4118,433,0 chrXIII 167907 . C G 4693.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.23;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,195:202:99:4693,513,0 chrXIII 168139 . C T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.22;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3609,387,0 chrXIII 168229 . T C 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=123;Dels=0.00;FS=3.194;HaplotypeScore=10.2851;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;MQRankSum=0.787;QD=23.20;ReadPosRankSum=1.703;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2886,321,0 chrXIII 168276 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=24.92;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2974,318,0 chrXIII 168709 . T C 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=125;Dels=0.00;FS=2.595;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;MQRankSum=-1.912;QD=20.46;ReadPosRankSum=2.847;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2590,285,0 chrXIII 168744 . T C 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;MQRankSum=-1.323;QD=19.56;ReadPosRankSum=1.678;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2517,276,0 chrXIII 168834 . T C 1901 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6212;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=2;QD=16.97;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1934,213,0 chrXIII 168894 . C T 60.97 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=61.1558;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=0.72;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:9:93,9,0 chrXIII 168900 . T G 1240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.187;DP=89;Dels=0.00;FS=6.484;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;MQRankSum=-1.187;QD=13.93;ReadPosRankSum=1.693;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1273,144,0 chrXIII 169412 . T G 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.363;DP=133;Dels=0.00;FS=5.085;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.276;QD=17.75;ReadPosRankSum=-1.034;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,128:133:99:2394,239,0 chrXIII 169482 . G A 1009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.831;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=50.4225;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;MQRankSum=-0.593;QD=13.82;ReadPosRankSum=0.546;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1042,114,0 chrXIII 169485 . G A 808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.415;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=49.6338;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;MQRankSum=1.015;QD=11.38;ReadPosRankSum=-0.929;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:3,68:71:77:841,77,0 chrXIII 169839 . G A 2081 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.62;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2114,225,0 chrXIII 169928 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=23.13;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3017,324,0 chrXIII 169946 . G T 2529 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=18.33;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2562,276,0 chrXIII 169960 . A T 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=6.651;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;MQRankSum=-0.117;QD=15.73;ReadPosRankSum=1.662;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2361,249,0 chrXIII 169962 . T C 2275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;MQRankSum=-1.017;QD=15.07;ReadPosRankSum=2.401;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:2,149:151:99:2308,252,0 chrXIII 170004 . T A 2403 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=15.91;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2436,258,0 chrXIII 170099 . T A 4562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.657;QD=26.07;ReadPosRankSum=1.712;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4562,481,0 chrXIII 170265 . A G 3949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=186;Dels=0.00;FS=5.887;HaplotypeScore=19.6892;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=2.083;QD=21.23;ReadPosRankSum=2.863;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:3,181:186:99:3949,426,0 chrXIII 170349 . C G 4885.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.8695;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.15;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4885,534,0 chrXIII 170713 . C A 4936.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.3999;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:0,216:220:99:4936,529,0 chrXIII 170932 . T C 4770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=243;Dels=0.00;FS=3.464;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.503;QD=19.63;ReadPosRankSum=1.703;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:1,241:243:99:4770,528,0 chrXIII 171523 . A G 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.422;DP=134;Dels=0.00;FS=7.847;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.034;QD=21.96;ReadPosRankSum=1.706;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2976,330,0 chrXIII 171785 . T C 5574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=257;Dels=0.00;FS=3.274;HaplotypeScore=13.8255;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.971;QD=21.69;ReadPosRankSum=1.718;SB=-3.165e+03 GT:AD:DP:GQ:PL 1/1:1,254:257:99:5574,595,0 chrXIII 171887 . C T 5040.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=21.91;SB=-3.144e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:5040,523,0 chrXIII 171896 . A C 4581.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=7.6221;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.36;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4581,519,0 chrXIII 172478 . C T 2970 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.34;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3003,324,0 chrXIII 172523 . C A 2987 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3020,318,0 chrXIII 172685 . T C 4309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.3617;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=0.308;QD=23.94;ReadPosRankSum=1.713;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4309,480,0 chrXIII 172924 . C T 3940.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.1514;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.26;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3940,417,0 chrXIII 172925 . C T 3872.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.51;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3872,408,0 chrXIII 173017 . A G 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=147;Dels=0.00;FS=5.633;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.853;QD=22.80;ReadPosRankSum=2.895;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:3,141:147:99:3352,366,0 chrXIII 173124 . G A 3329.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.78;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3329,360,0 chrXIII 173282 . T C 4715.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.5745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4715,510,0 chrXIII 173678 . C T 3631.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.21;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3631,384,0 chrXIII 173801 . G A 3511.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.2224;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3511,378,0 chrXIII 173888 . T C 3086 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.69;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3119,342,0 chrXIII 173927 . A C 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=128;Dels=0.00;FS=3.045;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.939;QD=23.73;ReadPosRankSum=2.333;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:3071,333,0 chrXIII 174020 . G A 2766 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2799,303,0 chrXIII 174363 . G C 3316.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3316,369,0 chrXIII 174577 . A G 4166.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.0092;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.93;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4166,462,0 chrXIII 174910 . A G 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.198;QD=21.71;ReadPosRankSum=1.707;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3073,345,0 chrXIII 174980 . T A 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=3.042;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.948;QD=21.72;ReadPosRankSum=1.656;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3009,318,0 chrXIII 174982 . C T 3043 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.54;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3076,327,0 chrXIII 175074 . G C 2303 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.14;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2336,255,0 chrXIII 175545 . T C 4692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=204;Dels=0.00;FS=6.215;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.728;QD=23.00;ReadPosRankSum=2.425;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4692,516,0 chrXIII 175777 . A G 4772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.968;DP=222;Dels=0.00;FS=5.884;HaplotypeScore=8.9326;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=1.115;QD=21.50;ReadPosRankSum=2.904;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:3,217:222:99:4772,516,0 chrXIII 175789 . C T 5178.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.01;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5178,538,0 chrXIII 175883 . A T 3512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=18.1077;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.703;QD=19.84;ReadPosRankSum=1.653;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3512,372,0 chrXIII 175912 . G A 4066.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.02;FS=0.000;HaplotypeScore=19.5284;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.40;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4066,435,0 chrXIII 176077 . T A 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.507;QD=23.21;ReadPosRankSum=1.605;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3830,414,0 chrXIII 176260 . C T 4267.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.7000;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=24.81;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4267,456,0 chrXIII 176569 . T C 4731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=216;Dels=0.00;FS=9.588;HaplotypeScore=9.0888;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.684;QD=21.90;ReadPosRankSum=2.856;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:3,213:216:99:4731,531,0 chrXIII 176730 . T C 4042.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4042,441,0 chrXIII 176890 . C T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.87;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3454,375,0 chrXIII 176942 . A G 3522.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.1861;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.46;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3522,384,0 chrXIII 177237 . T C 4165.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.79;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4165,450,0 chrXIII 177370 . G T 4796.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4796,505,0 chrXIII 177484 . C T 5955.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.92;SB=-2.963e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5955,628,0 chrXIII 177778 . G A 3971.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.1781;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.69;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3971,415,0 chrXIII 177801 . G A 3626.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.60;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3626,384,0 chrXIII 177805 . A T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=20.28;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3589,381,0 chrXIII 178190 . G A 5872.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-2.887e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5872,625,0 chrXIII 178248 . G C 5912.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=20.8066;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=21.58;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:0,272:274:99:5912,645,0 chrXIII 178801 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.31;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3493,366,0 chrXIII 178866 . T C 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.142;QD=23.42;ReadPosRankSum=1.710;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3723,411,0 chrXIII 178920 . A G 4231.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.0862;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.99;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4231,468,0 chrXIII 179112 . T A 4982.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.6979;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.57;SB=-2.970e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:4982,526,0 chrXIII 179130 . C T 4284.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.2883;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.60;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4284,462,0 chrXIII 179588 . A G 2164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;MQRankSum=-1.147;QD=14.62;ReadPosRankSum=1.709;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2197,243,0 chrXIII 179620 . T G 483.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;DP=129;Dels=0.00;FS=10.925;HaplotypeScore=5.7268;MLEAC=1;MLEAF=0.500;MQ=44.29;MQ0=0;MQRankSum=-5.057;QD=3.74;ReadPosRankSum=-6.965;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/1:87,42:129:99:513,0,1035 chrXIII 179621 . T A 464.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;DP=128;Dels=0.00;FS=14.735;HaplotypeScore=4.9381;MLEAC=1;MLEAF=0.500;MQ=44.75;MQ0=0;MQRankSum=-4.179;QD=3.63;ReadPosRankSum=-7.201;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:87,41:128:99:494,0,1024 chrXIII 179677 . T A 1482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=1;MQRankSum=0.548;QD=18.52;ReadPosRankSum=1.644;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1515,162,0 chrXIII 179752 . G A 724 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;QD=15.74;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:78:757,78,0 chrXIII 180141 . G C 2448 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.31;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2481,276,0 chrXIII 181180 . G T 2901 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.79;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2934,306,0 chrXIII 181319 . T C 2847 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.1754;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.34;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2880,315,0 chrXIII 181627 . G A 4297.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.55;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4297,459,0 chrXIII 183093 . C T 3642.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.78;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3642,387,0 chrXIII 183416 . C T 435 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.59;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:48:468,48,0 chrXIII 183574 . A T 99.26 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=19.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:132,15,0 chrXIII 183601 . A G 454 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=25.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:54:487,54,0 chrXIII 183655 . A G 684 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;QD=23.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:81:717,81,0 chrXIII 183748 . G A 429 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=15.89;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:51:462,51,0 chrXIII 183764 . G A 449 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=15.48;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:51:482,51,0 chrXIII 183799 . T C 586 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.55;MQ0=0;QD=15.03;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:69:619,69,0 chrXIII 183800 . A T 607 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.55;MQ0=0;QD=15.56;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:69:640,69,0 chrXIII 183815 . T C 668 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.05;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:75:701,75,0 chrXIII 183816 . A C 651 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.59;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:75:684,75,0 chrXIII 183824 . G T 656 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.58;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:75:689,75,0 chrXIII 183832 . G A 697 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.78;MQ0=0;QD=15.15;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:78:730,78,0 chrXIII 183879 . G A 1142 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.04;FS=0.000;HaplotypeScore=55.3473;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;QD=16.79;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1175,129,0 chrXIII 184115 . G T 2368 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=22.13;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2401,255,0 chrXIII 190082 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=2.72;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:53,6,0 chrXIII 190083 . A T 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=1.49;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:46,6,0 chrXIII 190128 . G C 1680 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=18.67;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1713,186,0 chrXIII 190481 . C T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.06;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3310,351,0 chrXIII 190595 . G A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.2238;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.29;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4076,432,0 chrXIII 191982 . C T 158.06 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=16.1648;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=4.52;SB=-1.091e+02 GT:AD:DP:GQ:PL 1/1:1,30:35:21:191,21,0 chrXIII 192033 . A G 943 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:976,108,0 chrXIII 192147 . C T 1013 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.1463;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=20.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1046,114,0 chrXIII 192203 . G A 2145 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;QD=21.67;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2178,237,0 chrXIII 192208 . A G 2053 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.75;MQ0=0;QD=20.33;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2086,237,0 chrXIII 192254 . C T 2259 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=20.92;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2292,240,0 chrXIII 192291 . G A 1902 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=22.38;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1935,207,0 chrXIII 192332 . T C 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=3.059;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.136;QD=22.54;ReadPosRankSum=1.693;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:2062,228,0 chrXIII 192396 . C T 2841 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;QD=21.36;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2874,303,0 chrXIII 192414 . A G 2231 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=19.07;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2264,255,0 chrXIII 192432 . T C 1926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=122;Dels=0.00;FS=10.039;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;MQRankSum=-1.653;QD=15.79;ReadPosRankSum=2.926;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:1959,203,0 chrXIII 192436 . T C 1863 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=42.01;MQ0=0;QD=15.15;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1896,210,0 chrXIII 192465 . C A 1044 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=44.9309;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=10.24;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1077,114,0 chrXIII 192554 . G C 136.13 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=54.8878;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=1.68;SB=-8.981e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:18:169,18,0 chrXIII 194017 . T C 4666.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.2991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4666,516,0 chrXIII 194131 . G A 4118.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.88;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4118,433,0 chrXIII 194164 . C T 4188.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.40;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4188,450,0 chrXIII 195521 . T C 3905.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.0686;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.82;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3905,426,0 chrXIII 195744 . T C 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=138;Dels=0.00;FS=4.323;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.581;QD=21.34;ReadPosRankSum=1.682;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2978,333,0 chrXIII 195778 . C A 3151 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.7049;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.69;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3184,342,0 chrXIII 195813 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.50;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3115,330,0 chrXIII 195860 . A T 2453 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.9935;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.52;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2486,270,0 chrXIII 195938 . A G 1729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=90;Dels=0.00;FS=6.163;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-1.416;QD=19.21;ReadPosRankSum=2.855;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:3,87:90:99:1762,195,0 chrXIII 195968 . G A 2171 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=12.5646;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=22.38;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2204,228,0 chrXIII 196000 . A C 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.672;DP=116;Dels=0.00;FS=4.017;HaplotypeScore=5.0446;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-1.493;QD=22.32;ReadPosRankSum=1.284;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2622,264,0 chrXIII 196031 . T A 2290 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=20.63;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2323,246,0 chrXIII 196033 . G A 2249 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=19.90;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2282,249,0 chrXIII 196059 . T C 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=121;Dels=0.00;FS=2.730;HaplotypeScore=7.7996;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;MQRankSum=0.579;QD=19.14;ReadPosRankSum=2.368;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2349,261,0 chrXIII 196123 . A G 2254 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.27;MQ0=2;QD=20.49;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2287,249,0 chrXIII 196332 . T A 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.421;DP=20;Dels=0.00;FS=6.662;HaplotypeScore=8.5277;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=2;MQRankSum=-1.377;QD=0.79;ReadPosRankSum=-2.977;SB=1.24 GT:AD:DP:GQ:PL 1/1:10,10:20:6:47,6,0 chrXIII 201924 . G A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=2;QD=0.68;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,27:29:6:51,6,0 chrXIII 201928 . A G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=2;QD=0.82;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,27:29:6:55,6,0 chrXIII 201932 . A C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=2;QD=0.75;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,27:29:6:53,6,0 chrXIII 201937 . C A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=2;QD=0.63;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,39:41:6:57,6,0 chrXIII 201944 . C T 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=2;QD=0.72;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,34:36:6:57,6,0 chrXIII 201946 . A G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=2;QD=0.66;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,34:36:6:55,6,0 chrXIII 201947 . C T 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=2;QD=0.74;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,34:36:6:58,6,0 chrXIII 201949 . A T 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=2;QD=0.74;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,34:36:6:58,6,0 chrXIII 201951 . C G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=2;QD=0.66;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,34:36:6:55,6,0 chrXIII 201959 . T C 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=2;QD=1.34;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:2,49:51:12:101,12,0 chrXIII 201960 . A G 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=2;QD=1.46;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:2,49:51:12:107,12,0 chrXIII 201961 . C T 75.51 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=2;QD=1.48;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:2,49:51:12:108,12,0 chrXIII 201962 . A G 75.51 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=2;QD=1.48;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:2,49:51:12:108,12,0 chrXIII 201974 . T G 77.51 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=11;QD=1.29;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:11,49:60:12:110,12,0 chrXIII 202190 . C G 232 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=5;QD=4.00;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:5,53:58:30:265,30,0 chrXIII 202193 . A G 276 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=5;QD=4.52;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:5,56:61:36:309,36,0 chrXIII 202206 . T C 807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.066;DP=96;Dels=0.00;FS=17.700;HaplotypeScore=7.5320;MLEAC=2;MLEAF=1.00;MQ=32.53;MQ0=3;MQRankSum=-0.338;QD=8.41;ReadPosRankSum=2.886;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:16,80:96:93:840,93,0 chrXIII 202207 . T A 818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.874;DP=97;Dels=0.00;FS=15.184;HaplotypeScore=7.5320;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=3;MQRankSum=0.375;QD=8.43;ReadPosRankSum=2.290;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:13,84:97:93:851,93,0 chrXIII 202583 . C T 2148 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2181,237,0 chrXIII 203209 . C A 4649.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=24.86;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4649,487,0 chrXIII 203231 . C T 4337.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.19;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4337,459,0 chrXIII 203447 . A G 4595.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.5416;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.86;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4595,510,0 chrXIII 203515 . G A 3901.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.95;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3901,414,0 chrXIII 203615 . G A 3352.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3352,363,0 chrXIII 203883 . C T 2767 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.87;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2800,297,0 chrXIII 203921 . C T 3909.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.90;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3909,412,0 chrXIII 204477 . C T 4125.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.55;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4125,436,0 chrXIII 204520 . G A 3489.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.2888;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.81;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3489,378,0 chrXIII 204735 . C G 2935 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2968,324,0 chrXIII 205427 . A G 3846.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.13;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3846,423,0 chrXIII 205668 . T C 3542.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=171;Dels=0.00;FS=5.968;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=0.688;QD=20.71;ReadPosRankSum=2.747;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:3542,384,0 chrXIII 205674 . T C 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=175;Dels=0.00;FS=6.011;HaplotypeScore=7.0067;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-1.087;QD=21.39;ReadPosRankSum=2.856;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:3743,411,0 chrXIII 205993 . A G 3920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=178;Dels=0.00;FS=5.944;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-0.063;QD=22.02;ReadPosRankSum=2.938;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:3,174:178:99:3920,435,0 chrXIII 206111 . A G 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=43.32;MQ0=0;MQRankSum=-1.069;QD=20.44;ReadPosRankSum=1.708;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2915,321,0 chrXIII 206133 . A G 2189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=111.0681;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=0;MQRankSum=-2.190;QD=17.80;ReadPosRankSum=2.390;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2222,243,0 chrXIII 206147 . A C 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.377;DP=114;Dels=0.00;FS=4.296;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;MQRankSum=0.294;QD=15.46;ReadPosRankSum=4.865;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:9,105:114:99:1796,204,0 chrXIII 206151 . A G 1778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.953;DP=118;Dels=0.00;FS=4.008;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.50;MQ0=0;MQRankSum=-0.101;QD=15.07;ReadPosRankSum=4.968;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:9,109:118:99:1811,188,0 chrXIII 206290 . G C 1675 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.75;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1708,186,0 chrXIII 206335 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.46;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1445,159,0 chrXIII 206743 . T A 4258.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=183;Dels=0.00;FS=3.704;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-0.445;QD=23.27;ReadPosRankSum=1.675;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4258,456,0 chrXIII 206746 . G A 4170.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.91;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4170,453,0 chrXIII 206980 . C T 3507.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.65;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3507,384,0 chrXIII 207130 . A C 3366.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.21;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3366,375,0 chrXIII 207364 . A G 1912 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=12.2871;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=19.71;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1945,216,0 chrXIII 207616 . G A 3441.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3441,378,0 chrXIII 207757 . A G 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=3.167;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.241;QD=23.84;ReadPosRankSum=1.658;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3361,372,0 chrXIII 207880 . T C 4300.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.8377;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4300,471,0 chrXIII 208048 . G A 3562.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.75;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3562,378,0 chrXIII 208201 . A G 3501.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=176;Dels=0.00;FS=2.940;HaplotypeScore=22.0283;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.663;QD=19.89;ReadPosRankSum=2.422;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3501,390,0 chrXIII 208426 . C T 4850.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.89;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4850,525,0 chrXIII 208469 . C G 4842.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.52;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:4842,540,0 chrXIII 208696 . C T 4684.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.90;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4684,490,0 chrXIII 208723 . C T 3908.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.36;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3908,429,0 chrXIII 208989 . T A 1771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=3.367;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-1.413;QD=23.30;ReadPosRankSum=1.641;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1804,189,0 chrXIII 209006 . G T 1349 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=20.75;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1382,144,0 chrXIII 209014 . G A 1325 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=19.49;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1358,144,0 chrXIII 209233 . C T 2229 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=23.97;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2262,237,0 chrXIII 209344 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.83;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3742,405,0 chrXIII 209449 . C G 4296.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=25.57;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:4296,471,0 chrXIII 209977 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=198;Dels=0.00;FS=2.280;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-0.872;QD=18.62;ReadPosRankSum=1.487;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:3,193:198:99:3687,417,0 chrXIII 209980 . T C 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=198;Dels=0.00;FS=3.189;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-0.770;QD=18.09;ReadPosRankSum=1.715;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:3581,393,0 chrXIII 210513 . G A 5063.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=19.2164;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.50;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5063,535,0 chrXIII 210609 . G A 4951.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=12.8036;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.00;SB=-2.935e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:4951,517,0 chrXIII 210688 . G A 4672.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.60;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4672,504,0 chrXIII 210877 . G C 3369.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=22.61;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3369,369,0 chrXIII 210889 . A G 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.776;DP=145;Dels=0.00;FS=11.218;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-0.546;QD=21.40;ReadPosRankSum=3.623;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:5,139:145:99:3136,348,0 chrXIII 210922 . T A 3035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.7894;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.331;QD=20.23;ReadPosRankSum=1.661;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3068,333,0 chrXIII 211024 . G A 3346.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.79;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3346,354,0 chrXIII 211049 . T C 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6715;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.451;QD=23.56;ReadPosRankSum=1.545;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2648,294,0 chrXIII 211216 . G A 3477.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=24.84;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3477,372,0 chrXIII 211462 . T C 2046 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=21.31;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2079,228,0 chrXIII 211471 . A T 1990 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.95;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2023,222,0 chrXIII 211566 . T C 2098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=89;Dels=0.00;FS=2.557;HaplotypeScore=4.1755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.081;QD=23.57;ReadPosRankSum=2.920;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:3,85:89:99:2131,234,0 chrXIII 212592 . C G 3475.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6165;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.32;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3475,378,0 chrXIII 212859 . T C 6531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.242;QD=24.65;ReadPosRankSum=1.706;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:1,264:265:99:6531,714,0 chrXIII 213004 . T C 4900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.616;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=11.2917;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.915;QD=21.78;ReadPosRankSum=0.224;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:4900,522,0 chrXIII 213294 . C G 3099 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.37;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3132,354,0 chrXIII 213301 . G A 3401.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.99;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3401,372,0 chrXIII 213451 . C G 3327.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.8684;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.79;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3327,366,0 chrXIII 213499 . T C 3488.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.95;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3488,387,0 chrXIII 213972 . G A 4370.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.2804;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.53;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,190:194:99:4370,460,0 chrXIII 214086 . C T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.4683;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=17.88;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:3415,360,0 chrXIII 214345 . C T 5875.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=11.8436;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.29;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,275:276:99:5875,651,0 chrXIII 214378 . A G 5651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=257;Dels=0.00;FS=2.651;HaplotypeScore=7.9234;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.272;QD=21.99;ReadPosRankSum=2.411;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:2,255:257:99:5651,621,0 chrXIII 214546 . A C 4617.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.7642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.74;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4617,510,0 chrXIII 214608 . C T 2974 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.80;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3007,324,0 chrXIII 214752 . G A 4055.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.91;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4055,441,0 chrXIII 214914 . C T 4796.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.5009;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.63;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4796,511,0 chrXIII 215331 . C T 3660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=178;Dels=0.01;FS=0.000;HaplotypeScore=5.8915;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-1.455;QD=20.56;ReadPosRankSum=1.692;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3660,387,0 chrXIII 215334 . T C 3466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.0606;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=0.316;QD=19.69;ReadPosRankSum=2.776;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:3,172:176:99:3466,384,0 chrXIII 215544 . C T 4884.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=23.71;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4884,525,0 chrXIII 215595 . T C 4512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.529;DP=195;Dels=0.00;FS=7.545;HaplotypeScore=15.2330;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=1.209;QD=23.14;ReadPosRankSum=3.791;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:5,186:195:99:4512,492,0 chrXIII 215755 . A G 5861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=249;Dels=0.00;FS=3.099;HaplotypeScore=18.4451;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.288;QD=23.54;ReadPosRankSum=1.718;SB=-3.190e+03 GT:AD:DP:GQ:PL 1/1:1,246:249:99:5861,639,0 chrXIII 215788 . C A 5988.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.15;SB=-3.202e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5988,643,0 chrXIII 215820 . C A 5744.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.26;SB=-2.978e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5744,624,0 chrXIII 215994 . T C 6118.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=276;Dels=0.00;FS=5.999;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.963;QD=22.17;ReadPosRankSum=2.909;SB=-3.235e+03 GT:AD:DP:GQ:PL 1/1:3,271:276:99:6118,687,0 chrXIII 216027 . C T 5423.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=13.9046;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.61;SB=-3.050e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5423,588,0 chrXIII 216105 . G A 5102.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.78;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5102,552,0 chrXIII 216321 . A C 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.560;DP=157;Dels=0.01;FS=17.935;HaplotypeScore=14.9015;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;MQRankSum=0.511;QD=17.16;ReadPosRankSum=3.722;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:5,150:155:99:2727,297,0 chrXIII 216327 . C A 2749 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.04;FS=0.000;HaplotypeScore=19.4171;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=17.29;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2782,306,0 chrXIII 216752 . A G 4469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.9730;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.695;QD=24.03;ReadPosRankSum=1.676;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4469,492,0 chrXIII 216942 . A T 2475 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.52;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2508,264,0 chrXIII 217030 . T G 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=118;Dels=0.00;FS=7.360;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.371;QD=22.44;ReadPosRankSum=2.407;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:2,114:118:99:2681,297,0 chrXIII 217508 . G A 6333.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=16.3407;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.45;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,256:259:99:6333,661,0 chrXIII 217557 . A C 6090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=274;Dels=0.00;FS=3.466;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=0.543;QD=22.23;ReadPosRankSum=1.706;SB=-3.241e+03 GT:AD:DP:GQ:PL 1/1:1,270:274:99:6090,661,0 chrXIII 217558 . T C 6010.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.01;SB=-3.091e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:6010,672,0 chrXIII 217907 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.53;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2879,303,0 chrXIII 218060 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.64;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3212,342,0 chrXIII 218127 . A G 2723 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2756,309,0 chrXIII 218703 . G C 5842.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=20.2243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,264:271:99:5842,663,0 chrXIII 218827 . A T 4603.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.62;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4603,484,0 chrXIII 218882 . T C 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=156;Dels=0.00;FS=4.078;HaplotypeScore=17.3244;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.422;QD=19.24;ReadPosRankSum=1.643;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3035,333,0 chrXIII 218963 . C T 4144.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4144,436,0 chrXIII 219146 . T C 3276.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.9517;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.44;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3276,357,0 chrXIII 219311 . T C 3828.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=3.081;HaplotypeScore=5.9679;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.435;QD=20.47;ReadPosRankSum=1.695;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3828,423,0 chrXIII 219326 . G A 3891.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.92;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3891,411,0 chrXIII 219608 . T C 5953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.387;DP=284;Dels=0.00;FS=7.924;HaplotypeScore=10.4799;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-0.269;QD=20.96;ReadPosRankSum=3.412;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:4,278:284:99:5953,657,0 chrXIII 219620 . A G 6111.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=14.4846;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=20.51;SB=-2.987e+03 GT:AD:DP:GQ:PL 1/1:0,294:298:99:6111,661,0 chrXIII 219807 . A G 5738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=15.8978;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-1.436;QD=22.24;ReadPosRankSum=1.719;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:1,257:258:99:5738,642,0 chrXIII 219863 . T C 6805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=321;Dels=0.00;FS=4.981;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-0.109;QD=21.20;ReadPosRankSum=1.699;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:1,318:321:99:6805,733,0 chrXIII 220077 . C G 4667.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4667,504,0 chrXIII 221639 . T C 5000.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=249;Dels=0.00;FS=3.633;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=1.101;QD=20.08;ReadPosRankSum=1.718;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:1,246:249:99:5000,555,0 chrXIII 221642 . T C 4900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.323;DP=252;Dels=0.00;FS=14.376;HaplotypeScore=3.7397;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-2.106;QD=19.44;ReadPosRankSum=3.426;SB=-2.796e+03 GT:AD:DP:GQ:PL 1/1:4,248:252:99:4900,546,0 chrXIII 221702 . A G 4648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.285;DP=239;Dels=0.00;FS=5.236;HaplotypeScore=19.1870;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.370;QD=19.45;ReadPosRankSum=3.409;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:4,234:239:99:4648,513,0 chrXIII 221882 . G A 4942.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.71;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4942,526,0 chrXIII 222319 . G A 5266.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.49;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:5266,556,0 chrXIII 223631 . C A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.17;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3624,384,0 chrXIII 223904 . G A 3841.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3841,408,0 chrXIII 224339 . A G 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=122;Dels=0.00;FS=3.716;HaplotypeScore=8.7398;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.606;QD=22.88;ReadPosRankSum=1.703;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2824,312,0 chrXIII 224490 . G C 2835 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.62;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2868,321,0 chrXIII 224795 . G A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.75;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3276,357,0 chrXIII 224989 . G A 4895.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.9468;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=23.88;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4895,523,0 chrXIII 225198 . T C 4860.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=23.25;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4860,540,0 chrXIII 225206 . C T 4554.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=22.11;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4554,507,0 chrXIII 225254 . G T 4231.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=21.37;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4231,453,0 chrXIII 225259 . T C 3883.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.02;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3883,429,0 chrXIII 225424 . A G 2441 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.25;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2474,270,0 chrXIII 225509 . C A 2437 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.38;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2470,261,0 chrXIII 225572 . C T 1877 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=16.46;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1910,201,0 chrXIII 225581 . T C 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3196;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;MQRankSum=-0.874;QD=14.13;ReadPosRankSum=1.579;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1630,180,0 chrXIII 225586 . G A 1582 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=14.38;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:1615,171,0 chrXIII 225614 . G A 2352 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=15.4166;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=15.79;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2385,252,0 chrXIII 225656 . A G 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=168;Dels=0.00;FS=5.740;HaplotypeScore=7.0780;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-1.585;QD=20.40;ReadPosRankSum=1.648;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,164:168:99:3428,375,0 chrXIII 225831 . A G 5527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=1.354;QD=24.14;ReadPosRankSum=1.687;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5527,615,0 chrXIII 226822 . A T 617 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:69:650,69,0 chrXIII 227975 . T G 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=3.896;HaplotypeScore=7.8289;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=0.151;QD=21.28;ReadPosRankSum=1.698;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2225,246,0 chrXIII 227981 . T C 2097 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0269;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=21.62;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2130,234,0 chrXIII 228183 . C T 1676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.691;DP=103;Dels=0.00;FS=23.659;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=0.821;QD=16.27;ReadPosRankSum=3.430;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:5,98:103:99:1709,186,0 chrXIII 228217 . C T 2165 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.33;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2198,234,0 chrXIII 229206 . G A 4038.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.1781;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.94;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4038,427,0 chrXIII 229786 . C T 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=124;Dels=0.00;FS=3.774;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.369;QD=24.21;ReadPosRankSum=-1.397;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3035,318,0 chrXIII 229941 . A G 3940.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.65;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3940,432,0 chrXIII 231092 . A G 5271.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.4894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.97;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5271,579,0 chrXIII 231337 . A G 4304.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=17.5789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4304,468,0 chrXIII 231551 . G A 4011.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.0411;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.88;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4011,424,0 chrXIII 232005 . A G 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=163;Dels=0.00;FS=6.156;HaplotypeScore=13.1073;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.114;QD=22.35;ReadPosRankSum=2.404;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3643,396,0 chrXIII 232186 . C T 2857 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.81;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2890,312,0 chrXIII 232497 . A T 3799.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3799,405,0 chrXIII 232662 . C T 3551.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.21;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3551,384,0 chrXIII 232832 . C T 4733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.156;QD=24.91;ReadPosRankSum=1.475;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4733,502,0 chrXIII 233147 . A G 3315.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0311;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.95;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3315,366,0 chrXIII 233290 . T C 103.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.110;DP=122;Dels=0.00;FS=12.436;HaplotypeScore=161.6621;MLEAC=1;MLEAF=0.500;MQ=56.10;MQ0=0;MQRankSum=1.332;QD=0.84;ReadPosRankSum=-3.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:111,11:122:99:133,0,363 chrXIII 233374 . T C 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;MQRankSum=-0.682;QD=23.11;ReadPosRankSum=1.706;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3084,336,0 chrXIII 233936 . G A 3317.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,141:145:99:3317,360,0 chrXIII 234083 . G A 4209.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.4927;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.25;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4209,456,0 chrXIII 234329 . C T 4323.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.7146;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.29;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4323,451,0 chrXIII 234475 . T C 1706 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.07;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1739,189,0 chrXIII 234484 . T C 1792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=4.514;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-1.141;QD=21.85;ReadPosRankSum=1.648;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1825,195,0 chrXIII 234518 . C G 1619 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.18;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1652,177,0 chrXIII 234542 . T A 1362 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.95;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1395,147,0 chrXIII 234636 . A T 1160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-1.155;QD=24.17;ReadPosRankSum=1.588;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1193,126,0 chrXIII 234644 . A G 1216 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.82;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1249,141,0 chrXIII 234685 . T C 911 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.24;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:99:944,105,0 chrXIII 235023 . A G 4278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.581;QD=23.25;ReadPosRankSum=1.713;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4278,462,0 chrXIII 235251 . A T 6773.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=20.1123;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.18;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:6773,727,0 chrXIII 235798 . G A 4745.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=15.1803;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.61;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4745,502,0 chrXIII 236068 . T C 4724.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=25.40;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4724,519,0 chrXIII 236370 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.75;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3082,330,0 chrXIII 236833 . C T 2854 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.59;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2887,306,0 chrXIII 237429 . T C 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=119;Dels=0.00;FS=2.655;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.031;QD=24.85;ReadPosRankSum=2.387;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2990,327,0 chrXIII 237965 . A G 4749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=197;Dels=0.00;FS=3.030;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.884;QD=24.11;ReadPosRankSum=2.348;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:2,191:197:99:4749,513,0 chrXIII 238234 . A C 1717 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=19.97;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1750,192,0 chrXIII 238369 . A T 1232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.374;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=-1.493;QD=21.24;ReadPosRankSum=1.673;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1265,138,0 chrXIII 238619 . G A 2645 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.27;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2678,282,0 chrXIII 238751 . A G 1322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=30.9920;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-1.078;QD=13.49;ReadPosRankSum=2.923;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:4,92:98:99:1355,153,0 chrXIII 239069 . G A 2673 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=25.95;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2706,291,0 chrXIII 239124 . A G 1623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.957;QD=24.22;ReadPosRankSum=1.681;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1656,180,0 chrXIII 239557 . C T 2607 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=27.44;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2640,273,0 chrXIII 239731 . A G 3778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=158;Dels=0.00;FS=3.004;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.688;QD=23.91;ReadPosRankSum=2.418;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3778,414,0 chrXIII 239958 . C T 2884 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4883;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.36;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2917,318,0 chrXIII 240460 . C T 1421 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1454,153,0 chrXIII 240594 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.859;QD=24.63;ReadPosRankSum=2.413;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3350,363,0 chrXIII 241545 . G C 1923 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.9269;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.49;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,101:104:99:1956,222,0 chrXIII 241597 . C T 2596 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.2965;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.97;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2629,276,0 chrXIII 241669 . C T 1645 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.85;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1678,177,0 chrXIII 241761 . A G 834 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.86;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:96:867,96,0 chrXIII 241899 . G T 680 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=17.44;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:78:713,78,0 chrXIII 242061 . A G 3794.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.17;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3794,408,0 chrXIII 242853 . G A 3744.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.55;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3744,396,0 chrXIII 244127 . A C 6706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=309;Dels=0.00;FS=5.754;HaplotypeScore=23.8521;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.365;QD=21.70;ReadPosRankSum=2.938;SB=-3.340e+03 GT:AD:DP:GQ:PL 1/1:3,305:309:99:6706,750,0 chrXIII 244359 . C T 6229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=18.2098;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.538;QD=22.57;ReadPosRankSum=1.680;SB=-3.454e+03 GT:AD:DP:GQ:PL 1/1:1,270:276:99:6229,664,0 chrXIII 244473 . C T 6569.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=17.3054;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.26;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:0,309:309:99:6569,697,0 chrXIII 244572 . T C 5184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=12.3973;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=1.719;QD=21.42;ReadPosRankSum=2.267;SB=-2.889e+03 GT:AD:DP:GQ:PL 1/1:2,240:242:99:5184,570,0 chrXIII 245480 . C T 3846.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.2237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3846,408,0 chrXIII 245803 . T C 5186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=243;Dels=0.00;FS=12.024;HaplotypeScore=20.9282;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.096;QD=21.34;ReadPosRankSum=2.368;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:2,240:243:99:5186,579,0 chrXIII 246258 . C T 7102.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=14.1754;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.491;QD=23.29;ReadPosRankSum=-0.138;SB=-3.248e+03 GT:AD:DP:GQ:PL 1/1:1,301:305:99:7102,725,0 chrXIII 246803 . T C 3274.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3274,363,0 chrXIII 246910 . A T 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=3.590;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.245;QD=24.73;ReadPosRankSum=1.651;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3199,333,0 chrXIII 247126 . T C 3371.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.08;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3371,372,0 chrXIII 247153 . C T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.49;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3306,357,0 chrXIII 247440 . T C 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.137;DP=120;Dels=0.00;FS=7.867;HaplotypeScore=13.1973;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.573;QD=19.93;ReadPosRankSum=2.408;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:2,116:120:99:2425,261,0 chrXIII 247484 . C T 2272 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.50;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2305,246,0 chrXIII 247728 . T G 6423.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=24.52;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:6423,697,0 chrXIII 248834 . C T 3914.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.45;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3914,406,0 chrXIII 249476 . T C 6450.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.25;SB=-2.775e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:6450,723,0 chrXIII 249527 . T C 5912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.357;DP=253;Dels=0.00;FS=8.724;HaplotypeScore=17.8506;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.165;QD=23.37;ReadPosRankSum=3.309;SB=-3.022e+03 GT:AD:DP:GQ:PL 1/1:4,248:253:99:5912,651,0 chrXIII 250529 . C T 6662.01 PASS AC=2;AF=1.00;AN=2;DP=344;Dels=0.00;FS=0.000;HaplotypeScore=30.6039;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.37;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:1,334:344:99:6662,735,0 chrXIII 251177 . T A 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=140;Dels=0.00;FS=2.942;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.080;QD=23.91;ReadPosRankSum=2.361;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3347,357,0 chrXIII 251246 . G A 3886.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.415;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=15.6725;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=1.563;QD=23.41;ReadPosRankSum=1.605;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3886,417,0 chrXIII 251274 . A C 3802.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.04;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3802,414,0 chrXIII 251424 . T C 4666.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.33;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4666,522,0 chrXIII 251609 . A G 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.806;DP=172;Dels=0.00;FS=2.531;HaplotypeScore=17.6024;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=0.124;QD=19.91;ReadPosRankSum=2.947;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:3425,378,0 chrXIII 251631 . G A 2276 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.7133;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=17.11;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2309,243,0 chrXIII 251736 . T G 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=3.718;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.874;QD=19.88;ReadPosRankSum=1.671;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2279,255,0 chrXIII 251917 . A G 2673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=120;Dels=0.00;FS=9.365;HaplotypeScore=8.2430;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=2.236;QD=22.27;ReadPosRankSum=2.925;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2706,294,0 chrXIII 253274 . G A 4862.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=23.15;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4862,531,0 chrXIII 253290 . G C 4261.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=22.66;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4261,462,0 chrXIII 253309 . T C 3679.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.27;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3679,405,0 chrXIII 253503 . G T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=22.8717;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.57;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3537,375,0 chrXIII 253603 . C A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.50;MQ0=0;QD=23.09;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3348,360,0 chrXIII 253640 . C G 3129 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.59;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3162,342,0 chrXIII 253962 . G A 4345.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.87;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4345,471,0 chrXIII 254427 . A T 4493.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.8238;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.03;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4493,483,0 chrXIII 254932 . T C 3363.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.85;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3363,375,0 chrXIII 255248 . C T 3361.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=22.11;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3361,357,0 chrXIII 255395 . G A 3899.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.77;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3899,409,0 chrXIII 255569 . A G 4979.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.7386;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.66;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4979,540,0 chrXIII 256068 . C T 165.06 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:21:198,21,0 chrXIII 257811 . G A 2913 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.07;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2946,324,0 chrXIII 259069 . A G 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=145;Dels=0.00;FS=6.110;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.601;QD=22.22;ReadPosRankSum=2.951;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:3,141:145:99:3255,354,0 chrXIII 259663 . T C 3869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=170;Dels=0.00;FS=9.505;HaplotypeScore=12.0595;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.530;QD=22.76;ReadPosRankSum=2.911;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:3869,420,0 chrXIII 260334 . T C 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.706;QD=24.16;ReadPosRankSum=1.706;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3198,351,0 chrXIII 260437 . G A 3012 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.35;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3045,333,0 chrXIII 260462 . A G 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=126;Dels=0.00;FS=2.956;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.420;QD=21.89;ReadPosRankSum=2.352;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2791,315,0 chrXIII 260580 . T C 4443.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.63;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4443,495,0 chrXIII 260820 . G A 4779.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.31;SB=-2.783e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4779,508,0 chrXIII 261829 . A G 3165 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.2894;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.29;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3198,363,0 chrXIII 261864 . A G 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=6.479;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.318;QD=23.99;ReadPosRankSum=2.420;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3983,447,0 chrXIII 262219 . C T 3678.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.52;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3678,382,0 chrXIII 262749 . T C 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=16.2402;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=1.556;QD=22.77;ReadPosRankSum=1.710;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3598,396,0 chrXIII 263006 . G A 4393.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.01;FS=0.000;HaplotypeScore=27.7759;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=23.88;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4393,471,0 chrXIII 263069 . G A 62.51 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=168.4201;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=0.36;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:12:95,12,0 chrXIII 263145 . A G 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=137;Dels=0.00;FS=11.603;HaplotypeScore=27.9283;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-1.560;QD=20.53;ReadPosRankSum=2.948;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:3,132:137:99:2846,312,0 chrXIII 263216 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2521;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.16;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3566,384,0 chrXIII 263247 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.95;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3331,366,0 chrXIII 263460 . C T 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.291;QD=23.25;ReadPosRankSum=0.996;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2707,282,0 chrXIII 264450 . A C 3377.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.29;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3377,369,0 chrXIII 264868 . G A 2782 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.46;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2815,297,0 chrXIII 264880 . G C 2790 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.79;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2823,306,0 chrXIII 265251 . T C 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.332;QD=24.18;ReadPosRankSum=1.661;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3554,387,0 chrXIII 265689 . T C 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=164;Dels=0.00;FS=6.378;HaplotypeScore=11.7231;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.174;QD=21.72;ReadPosRankSum=2.343;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:2,160:164:99:3562,387,0 chrXIII 266166 . G A 2034 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2067,225,0 chrXIII 266327 . C A 3181 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3214,336,0 chrXIII 266874 . C T 610 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.79;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:69:643,69,0 chrXIII 267926 . T A 993 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.15;MQ0=0;QD=21.59;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1026,111,0 chrXIII 267945 . T C 903 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.99;MQ0=0;QD=20.07;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:936,105,0 chrXIII 267966 . A T 698 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=112.1149;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=0;QD=17.90;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:78:731,78,0 chrXIII 268094 . T A 900 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=17.31;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:933,102,0 chrXIII 268102 . T G 928 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=17.19;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:961,105,0 chrXIII 268153 . A G 977 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=18.79;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1010,111,0 chrXIII 268160 . C T 1005 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=40.7057;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=17.03;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1038,111,0 chrXIII 268210 . A G 1135 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=20.64;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1168,129,0 chrXIII 268243 . C T 1304 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=23.71;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1337,141,0 chrXIII 268427 . C A 1382 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.94;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1415,153,0 chrXIII 268589 . C A 2049 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.30;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2082,216,0 chrXIII 268616 . C A 1944 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.14;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1977,216,0 chrXIII 268655 . G A 2139 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2172,228,0 chrXIII 268760 . A C 1933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.115;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.155;QD=23.01;ReadPosRankSum=1.650;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1966,216,0 chrXIII 269778 . C T 2717 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2750,297,0 chrXIII 270183 . T G 3738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.0092;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.180;QD=22.38;ReadPosRankSum=1.711;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:1,162:167:99:3738,408,0 chrXIII 271672 . A C 2705 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2738,300,0 chrXIII 272213 . A T 7049.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=22.3602;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.73;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,285:285:99:7049,754,0 chrXIII 273267 . C T 2979 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.3673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3012,330,0 chrXIII 274614 . A G 4340.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.1832;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.38;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4340,477,0 chrXIII 275595 . T A 2614 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2647,288,0 chrXIII 276444 . A G 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.9218;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.122;QD=22.27;ReadPosRankSum=1.712;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3786,414,0 chrXIII 278550 . C G 5835.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=15.8120;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.22;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:0,268:275:99:5835,628,0 chrXIII 278581 . G A 5603.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.35;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5603,592,0 chrXIII 278881 . A G 4366.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.9289;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.59;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4366,492,0 chrXIII 278934 . C T 4752.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.0692;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=22.74;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4752,505,0 chrXIII 279616 . C T 5318.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5318,568,0 chrXIII 279877 . T G 3142 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3175,351,0 chrXIII 280179 . C G 3855.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.09;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3855,426,0 chrXIII 280284 . C T 4284.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.7548;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.62;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4284,459,0 chrXIII 280484 . G A 4435.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=17.9066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4435,469,0 chrXIII 281241 . A G 4740.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,199:203:99:4740,516,0 chrXIII 282462 . G A 5932.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.99;SB=-3.218e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5932,631,0 chrXIII 282677 . A G 5269.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=8.2746;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.52;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:5269,567,0 chrXIII 282723 . A G 4485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=0.654;QD=22.65;ReadPosRankSum=1.679;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:1,195:198:99:4485,492,0 chrXIII 282738 . G A 4220.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=22.81;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4220,450,0 chrXIII 283093 . T C 4454.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4454,498,0 chrXIII 283144 . A G 4177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=175;Dels=0.00;FS=10.213;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.017;QD=23.87;ReadPosRankSum=2.960;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:4177,459,0 chrXIII 283212 . T C 4240.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=185;Dels=0.00;FS=3.034;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-0.815;QD=22.92;ReadPosRankSum=1.713;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4240,471,0 chrXIII 283234 . C T 4630.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.92;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4630,504,0 chrXIII 283368 . T C 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=140;Dels=0.00;FS=7.339;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.752;QD=20.88;ReadPosRankSum=2.397;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2956,327,0 chrXIII 283624 . G C 2463 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2496,273,0 chrXIII 284260 . A G 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=181;Dels=0.00;FS=2.995;HaplotypeScore=15.8649;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=0.336;QD=23.33;ReadPosRankSum=2.395;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:4223,462,0 chrXIII 284383 . C T 4204.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.9581;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=19.37;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4204,447,0 chrXIII 284422 . T C 3708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=227;Dels=0.00;FS=2.558;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;MQRankSum=1.511;QD=16.33;ReadPosRankSum=2.916;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:3,223:227:99:3708,405,0 chrXIII 284434 . G A 3447.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;QD=15.60;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:3447,363,0 chrXIII 284443 . T C 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;MQRankSum=-1.279;QD=13.73;ReadPosRankSum=1.716;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:2972,330,0 chrXIII 284449 . T C 2958 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=6.0047;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=14.22;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:2991,327,0 chrXIII 284491 . C T 3020 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=18.08;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3053,324,0 chrXIII 285831 . T C 1594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.294;QD=20.18;ReadPosRankSum=1.688;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1627,180,0 chrXIII 285841 . C T 1566 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=19.10;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1599,171,0 chrXIII 286123 . T C 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=175;Dels=0.00;FS=5.252;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.775;QD=24.19;ReadPosRankSum=2.937;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:4234,462,0 chrXIII 286312 . C G 3323.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.92;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3323,363,0 chrXIII 286503 . C T 3136 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.09;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3169,333,0 chrXIII 286788 . T C 2467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.522;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.443;QD=22.63;ReadPosRankSum=1.636;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2500,270,0 chrXIII 286887 . G A 1973 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2006,216,0 chrXIII 287411 . G A 2715 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2748,291,0 chrXIII 287879 . A C 1905 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.7675;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=18.86;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,98:101:99:1938,210,0 chrXIII 287910 . C T 2233 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=100.6521;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=19.09;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2266,240,0 chrXIII 287924 . C T 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=109.2084;MLEAC=2;MLEAF=1.00;MQ=49.97;MQ0=0;MQRankSum=-0.900;QD=16.79;ReadPosRankSum=1.598;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2199,243,0 chrXIII 288024 . T C 3302.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.31;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3302,363,0 chrXIII 288031 . T C 3182 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.94;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3215,357,0 chrXIII 288364 . G A 3351.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3351,366,0 chrXIII 288433 . T A 4606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=210;Dels=0.00;FS=3.014;HaplotypeScore=9.8391;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.723;QD=21.93;ReadPosRankSum=2.414;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:2,208:210:99:4606,469,0 chrXIII 288558 . A G 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.447;QD=23.05;ReadPosRankSum=1.688;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3665,399,0 chrXIII 288901 . A G 4515.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.3915;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.02;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4515,504,0 chrXIII 289416 . C T 4847.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=18.1684;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:4847,511,0 chrXIII 289869 . C T 2760 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.00;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2793,300,0 chrXIII 290277 . A T 4582.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.2524;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.24;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4582,490,0 chrXIII 290295 . T G 5017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=232;Dels=0.00;FS=3.222;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=0.082;QD=21.63;ReadPosRankSum=1.717;SB=-2.923e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:5017,549,0 chrXIII 290438 . G A 4476.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=22.84;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4476,460,0 chrXIII 290445 . A G 4216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=199;Dels=0.00;FS=3.904;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-0.461;QD=21.19;ReadPosRankSum=1.715;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4216,462,0 chrXIII 290456 . A C 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=204;Dels=0.00;FS=3.863;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.789;QD=19.87;ReadPosRankSum=1.663;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4053,450,0 chrXIII 290576 . G A 3764.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.53;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3764,405,0 chrXIII 290664 . T A 4166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=168;Dels=0.00;FS=4.929;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.516;QD=24.80;ReadPosRankSum=1.670;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4166,444,0 chrXIII 290769 . T C 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.765;QD=21.48;ReadPosRankSum=1.670;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2439,267,0 chrXIII 290790 . G T 2466 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.08;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2499,264,0 chrXIII 290867 . G T 2338 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.5159;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.27;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2371,252,0 chrXIII 291003 . A G 2829 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.39;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2862,318,0 chrXIII 291274 . C T 3923.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=25.31;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3923,417,0 chrXIII 291392 . A G 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=145;Dels=0.00;FS=7.082;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;MQRankSum=1.135;QD=24.72;ReadPosRankSum=2.415;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3584,396,0 chrXIII 291877 . T C 3583.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.42;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3583,405,0 chrXIII 292060 . C T 3443.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.25;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3443,366,0 chrXIII 292843 . C T 3804.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.8740;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.78;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3804,411,0 chrXIII 292852 . A T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.08;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3444,372,0 chrXIII 292953 . G A 3621.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.77;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3621,384,0 chrXIII 293341 . A G 2991 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=21.83;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3024,333,0 chrXIII 293346 . A G 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-1.732;QD=21.65;ReadPosRankSum=1.679;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2869,315,0 chrXIII 294133 . A G 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=177;Dels=0.00;FS=2.855;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.426;QD=23.44;ReadPosRankSum=2.408;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:4148,459,0 chrXIII 294166 . T C 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=3.966;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.470;QD=21.60;ReadPosRankSum=1.647;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3500,390,0 chrXIII 294344 . C T 3146 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.96;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3179,336,0 chrXIII 295343 . C T 3432.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.80;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3432,363,0 chrXIII 295950 . G A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.39;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3708,393,0 chrXIII 296427 . T C 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=137;Dels=0.00;FS=4.346;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.223;QD=22.01;ReadPosRankSum=1.707;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3048,345,0 chrXIII 296909 . G A 2981 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3014,327,0 chrXIII 297405 . A G 1896 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.07;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1929,210,0 chrXIII 297419 . A G 2019 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.81;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2052,228,0 chrXIII 298131 . T A 3351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=3.282;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.761;QD=25.39;ReadPosRankSum=1.706;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3351,351,0 chrXIII 298266 . A T 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.588;QD=24.33;ReadPosRankSum=1.588;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2369,252,0 chrXIII 298799 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=152;Dels=0.00;FS=8.834;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.767;QD=23.00;ReadPosRankSum=3.389;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:4,146:152:99:3496,381,0 chrXIII 298845 . T C 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.619;DP=161;Dels=0.00;FS=17.373;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.363;QD=21.21;ReadPosRankSum=3.746;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:5,155:161:99:3415,384,0 chrXIII 298924 . C T 3911.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=22.87;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3911,411,0 chrXIII 300280 . C T 4350.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.0257;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4350,468,0 chrXIII 300446 . C T 3525.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3525,372,0 chrXIII 301031 . G T 4616.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.17;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4616,487,0 chrXIII 301274 . C T 4974.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.50;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4974,535,0 chrXIII 302126 . A G 4356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.522;QD=23.05;ReadPosRankSum=1.695;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4356,480,0 chrXIII 303266 . A G 4029.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.3281;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.51;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4029,459,0 chrXIII 303419 . T A 4603.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.9316;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.45;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4603,484,0 chrXIII 303491 . T C 5721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=262;Dels=0.00;FS=3.004;HaplotypeScore=14.9424;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.259;QD=21.84;ReadPosRankSum=2.355;SB=-3.085e+03 GT:AD:DP:GQ:PL 1/1:2,259:262:99:5721,645,0 chrXIII 303638 . A T 5224.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.53;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5224,559,0 chrXIII 303720 . T G 5172.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=253;Dels=0.00;FS=3.954;HaplotypeScore=13.9266;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.062;QD=20.44;ReadPosRankSum=1.691;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:1,250:253:99:5172,576,0 chrXIII 303851 . T A 4305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=190;Dels=0.00;FS=4.337;HaplotypeScore=8.8739;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=1.550;QD=22.66;ReadPosRankSum=1.659;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4305,454,0 chrXIII 303923 . T G 3724.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=19.81;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3724,411,0 chrXIII 303930 . C G 3791.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.5086;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=21.42;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3791,423,0 chrXIII 304046 . T G 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.320;QD=23.15;ReadPosRankSum=1.688;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3635,399,0 chrXIII 304117 . G A 4910.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=20.54;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:4910,520,0 chrXIII 304118 . G A 4913.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=20.64;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:4913,517,0 chrXIII 304595 . T C 5754.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=13.5667;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.88;SB=-3.147e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5754,630,0 chrXIII 304685 . T A 3687.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.34;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3687,393,0 chrXIII 304904 . A C 5251.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=16.5470;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.93;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,225:229:99:5251,582,0 chrXIII 305192 . T A 128.06 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=252.7582;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=0.47;SB=-3.373e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:21:161,21,0 chrXIII 305303 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=-0.980;QD=18.45;ReadPosRankSum=1.699;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:3911,423,0 chrXIII 305614 . G T 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.8544;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.353;QD=18.34;ReadPosRankSum=2.847;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:3,149:154:99:2858,315,0 chrXIII 305615 . T A 2798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.104;DP=155;Dels=0.00;FS=7.394;HaplotypeScore=9.2712;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.378;QD=18.05;ReadPosRankSum=4.010;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:6,149:155:99:2831,315,0 chrXIII 305906 . G A 5355.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.8469;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=26.00;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5355,579,0 chrXIII 306023 . T C 4387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.5053;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.898;QD=23.97;ReadPosRankSum=0.844;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:4387,480,0 chrXIII 306044 . G A 3818.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.86;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3818,417,0 chrXIII 306587 . A T 4632.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4632,490,0 chrXIII 306769 . C T 4985.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.20;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4985,520,0 chrXIII 307008 . C T 4194.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.2777;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=23.17;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4194,459,0 chrXIII 307060 . C T 4046.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.86;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4046,432,0 chrXIII 307069 . T G 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-1.574;QD=20.89;ReadPosRankSum=1.709;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3250,363,0 chrXIII 307219 . G A 3829.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=25.19;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3829,403,0 chrXIII 307396 . G A 2919 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.3294;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=21.62;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2952,309,0 chrXIII 307416 . T A 2381 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=18.90;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2414,258,0 chrXIII 307426 . A G 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=0.203;QD=18.07;ReadPosRankSum=1.701;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2039,225,0 chrXIII 307796 . G A 4508.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.6265;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.88;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4508,480,0 chrXIII 308151 . G A 3506.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=15.5232;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.22;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3506,369,0 chrXIII 308296 . T A 3793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=151;Dels=0.00;FS=6.108;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.887;QD=25.12;ReadPosRankSum=2.385;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3793,405,0 chrXIII 308753 . A G 2136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;MQRankSum=-0.683;QD=19.60;ReadPosRankSum=1.700;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2169,237,0 chrXIII 308762 . A G 1967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.147;HaplotypeScore=80.3710;MLEAC=2;MLEAF=1.00;MQ=40.80;MQ0=0;MQRankSum=-1.696;QD=20.28;ReadPosRankSum=1.696;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2000,219,0 chrXIII 308764 . A C 1929 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=159.4738;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=20.09;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1962,216,0 chrXIII 308804 . G A 1895 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;QD=19.34;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1928,204,0 chrXIII 308827 . C A 2008 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=20.08;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2041,222,0 chrXIII 308998 . A G 1682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=87;Dels=0.00;FS=7.032;HaplotypeScore=65.8357;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;MQRankSum=-0.212;QD=19.33;ReadPosRankSum=2.365;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1715,186,0 chrXIII 309061 . A G 1846 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.7305;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=17.92;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1879,204,0 chrXIII 309160 . T C 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=1.675;QD=23.92;ReadPosRankSum=1.703;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2975,327,0 chrXIII 309183 . C T 2454 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=24.06;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2487,264,0 chrXIII 309271 . A G 1271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=71;Dels=0.00;FS=3.030;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;MQRankSum=0.156;QD=17.90;ReadPosRankSum=2.311;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1304,147,0 chrXIII 309285 . C T 1430 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=19.86;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1463,156,0 chrXIII 309296 . T C 1480 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=18.73;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1513,168,0 chrXIII 309305 . T A 1900 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.43;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1933,201,0 chrXIII 309424 . G T 2315 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=19.62;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2348,252,0 chrXIII 309446 . G A 2139 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=17.68;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2172,243,0 chrXIII 309469 . T A 2009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=-0.619;QD=16.88;ReadPosRankSum=2.738;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2042,222,0 chrXIII 309490 . T C 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-1.346;QD=17.78;ReadPosRankSum=2.411;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2291,258,0 chrXIII 309557 . C T 3785.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=22.94;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3785,391,0 chrXIII 309570 . A G 3912.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=21.49;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3912,429,0 chrXIII 309648 . C T 4511.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.1805;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=23.13;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4511,478,0 chrXIII 309663 . G A 4273.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=22.03;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4273,453,0 chrXIII 309809 . G C 3817.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=21.21;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3817,414,0 chrXIII 309810 . A C 3586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-1.360;QD=20.26;ReadPosRankSum=1.713;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3586,408,0 chrXIII 310225 . T C 2835 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.03;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2868,318,0 chrXIII 310534 . C T 3677.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3677,402,0 chrXIII 310858 . G A 3842.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3842,411,0 chrXIII 311235 . C T 2754 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2787,294,0 chrXIII 311868 . C T 3478.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.1540;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.84;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3478,378,0 chrXIII 311951 . T G 2986 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=117.4334;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=23.15;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3019,327,0 chrXIII 311964 . G A 2994 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=108.0590;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=23.39;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3027,318,0 chrXIII 312006 . A G 2688 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.36;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2721,297,0 chrXIII 312074 . C A 2737 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.12;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2770,297,0 chrXIII 312517 . A T 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=3.274;HaplotypeScore=12.3438;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.758;QD=22.96;ReadPosRankSum=1.709;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3536,381,0 chrXIII 312699 . C A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.6395;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.18;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3833,420,0 chrXIII 312812 . T C 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=3.388;HaplotypeScore=7.9676;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.457;QD=23.49;ReadPosRankSum=1.708;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3382,372,0 chrXIII 312892 . G A 3900.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.49;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3900,414,0 chrXIII 312920 . C A 3101 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.14;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3134,345,0 chrXIII 312973 . G A 3218.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.50;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3251,354,0 chrXIII 313027 . T C 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.585;QD=21.52;ReadPosRankSum=1.708;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:3132,348,0 chrXIII 313051 . C T 3150 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=20.72;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3183,342,0 chrXIII 313064 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.16;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2869,306,0 chrXIII 313329 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.61;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3244,351,0 chrXIII 313919 . A G 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.297;DP=141;Dels=0.00;FS=8.548;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-1.211;QD=20.42;ReadPosRankSum=3.396;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:4,137:141:99:2912,318,0 chrXIII 313935 . T C 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=3.372;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=0.670;QD=19.48;ReadPosRankSum=1.686;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:2975,333,0 chrXIII 314180 . T C 4073.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=16.3071;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.68;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4073,447,0 chrXIII 314570 . G A 4531.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.78;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4531,498,0 chrXIII 314782 . A G 3618.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.5767;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.20;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3618,408,0 chrXIII 314816 . G A 3988.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.74;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3988,423,0 chrXIII 315372 . T A 4018.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.50;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4018,424,0 chrXIII 315598 . A G 4316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=186;Dels=0.00;FS=5.285;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.124;QD=23.20;ReadPosRankSum=2.962;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:3,183:186:99:4316,471,0 chrXIII 315793 . C T 3620.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.14;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3620,378,0 chrXIII 316027 . A G 3180 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3213,351,0 chrXIII 316282 . A G 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=143;Dels=0.00;FS=7.299;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.902;QD=24.10;ReadPosRankSum=2.381;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:3446,375,0 chrXIII 316408 . T G 3943.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.04;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3943,432,0 chrXIII 316589 . A G 4938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=218;Dels=0.00;FS=3.567;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-0.128;QD=22.65;ReadPosRankSum=1.684;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:1,215:218:99:4938,540,0 chrXIII 316612 . G A 5373.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=23.06;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5373,568,0 chrXIII 317105 . A T 2477 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.72;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2510,270,0 chrXIII 317109 . G T 2495 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.89;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2528,270,0 chrXIII 317159 . G A 2931 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.72;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2964,318,0 chrXIII 317671 . C T 4790.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.0656;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.69;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4790,499,0 chrXIII 317706 . A G 4366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.4840;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.470;QD=23.35;ReadPosRankSum=1.713;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4366,471,0 chrXIII 317909 . T C 2669 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.0194;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.34;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,134:138:99:2702,297,0 chrXIII 318079 . T A 5467.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=25.31;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5467,577,0 chrXIII 318108 . A C 5569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=237;Dels=0.00;FS=10.835;HaplotypeScore=17.3083;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.407;QD=23.50;ReadPosRankSum=2.407;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:2,230:237:99:5569,615,0 chrXIII 318144 . A G 6306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=267;Dels=0.00;FS=12.192;HaplotypeScore=16.7607;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.406;QD=23.62;ReadPosRankSum=2.394;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:2,261:267:99:6306,702,0 chrXIII 319018 . G A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.4576;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.32;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3795,408,0 chrXIII 319027 . A G 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=165;Dels=0.00;FS=5.676;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-1.558;QD=20.44;ReadPosRankSum=2.884;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3372,375,0 chrXIII 319247 . T C 3298.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.3576;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.43;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3298,363,0 chrXIII 319331 . T C 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.9789;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.732;QD=21.94;ReadPosRankSum=1.643;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2622,288,0 chrXIII 319443 . T C 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.169;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.087;QD=23.74;ReadPosRankSum=1.707;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3300,354,0 chrXIII 319703 . A G 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=171;Dels=0.00;FS=6.069;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.414;QD=19.67;ReadPosRankSum=2.911;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:3,167:171:99:3363,369,0 chrXIII 319705 . G A 3454.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.93;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3454,369,0 chrXIII 319884 . A G 4181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=172;Dels=0.00;FS=9.262;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-0.538;QD=24.31;ReadPosRankSum=2.924;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:3,169:172:99:4181,456,0 chrXIII 319962 . A G 3431.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.99;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3431,393,0 chrXIII 319980 . A T 3931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=174;Dels=0.00;FS=4.120;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=1.191;QD=22.59;ReadPosRankSum=1.712;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3931,417,0 chrXIII 320166 . A G 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.8675;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-1.539;QD=23.16;ReadPosRankSum=1.693;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4145,456,0 chrXIII 320868 . A C 3775.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=21.95;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3775,429,0 chrXIII 320923 . T A 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=169;Dels=0.00;FS=3.063;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=0.167;QD=22.80;ReadPosRankSum=1.690;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:1,165:169:99:3853,411,0 chrXIII 320924 . A G 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.282;DP=168;Dels=0.00;FS=9.174;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;MQRankSum=-2.190;QD=22.20;ReadPosRankSum=3.376;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:4,164:168:99:3729,411,0 chrXIII 321019 . A G 3827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.082;DP=167;Dels=0.00;FS=3.036;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=1.317;QD=22.92;ReadPosRankSum=2.405;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3827,420,0 chrXIII 321060 . A G 3938.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.5223;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=22.90;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3938,429,0 chrXIII 321097 . A T 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.3853;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;MQRankSum=-0.698;QD=20.71;ReadPosRankSum=1.708;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3015,321,0 chrXIII 321125 . A G 1611 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=63.0690;MLEAC=2;MLEAF=1.00;MQ=32.49;MQ0=0;MQRankSum=-2.216;QD=16.96;ReadPosRankSum=2.398;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1644,180,0 chrXIII 321126 . G A 1645 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=62.4849;MLEAC=2;MLEAF=1.00;MQ=31.64;MQ0=0;QD=17.69;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1678,183,0 chrXIII 321132 . C A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=108.6433;MLEAC=2;MLEAF=1.00;MQ=30.58;MQ0=0;QD=0.22;SB=-3.298e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:6:49,6,0 chrXIII 321232 . A G 2723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-1.732;QD=21.78;ReadPosRankSum=1.704;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2756,309,0 chrXIII 321247 . A C 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=1.053;QD=20.94;ReadPosRankSum=2.391;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2651,291,0 chrXIII 321266 . G A 2088 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=19.16;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2121,225,0 chrXIII 321436 . A G 2586 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=23.94;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2619,282,0 chrXIII 321490 . T C 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;MQRankSum=0.073;QD=25.06;ReadPosRankSum=1.645;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:3015,333,0 chrXIII 321587 . T C 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;MQRankSum=-0.549;QD=19.50;ReadPosRankSum=1.704;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2431,276,0 chrXIII 321624 . C T 2513 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=18.75;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2546,267,0 chrXIII 321625 . A G 2404 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=17.68;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2437,267,0 chrXIII 321646 . A C 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;MQRankSum=-0.693;QD=15.60;ReadPosRankSum=1.707;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2233,243,0 chrXIII 321660 . G A 2185 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=16.07;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2218,231,0 chrXIII 321686 . G A 2051 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=16.54;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2084,225,0 chrXIII 321762 . T C 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.523;QD=19.50;ReadPosRankSum=1.702;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2314,255,0 chrXIII 321892 . A C 3693.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=24.14;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3693,411,0 chrXIII 322106 . C G 4530.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.7421;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4530,501,0 chrXIII 323081 . C T 3539.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.59;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3539,372,0 chrXIII 323286 . G A 2578 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.42;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2611,273,0 chrXIII 323439 . T C 3155 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=21.91;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3188,351,0 chrXIII 323445 . G C 2987 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.74;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3020,333,0 chrXIII 323839 . C T 2494 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.3100;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.07;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2527,270,0 chrXIII 323942 . A G 1082 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=20.42;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1115,123,0 chrXIII 323949 . G A 768 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=16.34;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:84:801,84,0 chrXIII 324005 . A T 926 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=16.25;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:959,102,0 chrXIII 324023 . T G 1196 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=17.59;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1229,135,0 chrXIII 324028 . G A 1325 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=19.78;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1358,141,0 chrXIII 324034 . T G 1300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=4.175;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=0.662;QD=18.84;ReadPosRankSum=1.630;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1333,147,0 chrXIII 324107 . C T 1778 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.09;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1811,189,0 chrXIII 324350 . C T 3101 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.14;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3134,342,0 chrXIII 324431 . G A 4132.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.8173;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.31;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4132,444,0 chrXIII 324584 . A G 4811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.657;QD=23.70;ReadPosRankSum=1.681;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4811,531,0 chrXIII 324605 . T C 4322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=188;Dels=0.00;FS=3.580;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.454;QD=22.99;ReadPosRankSum=1.714;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4322,474,0 chrXIII 324879 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2181;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.25;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3088,327,0 chrXIII 325046 . G A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.7280;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.34;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3624,378,0 chrXIII 325160 . C T 3793.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.63;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3793,402,0 chrXIII 325675 . A G 4524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.275;QD=21.24;ReadPosRankSum=1.683;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,211:213:99:4524,501,0 chrXIII 325728 . A G 4844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.222;QD=21.25;ReadPosRankSum=2.342;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:2,226:228:99:4844,540,0 chrXIII 325905 . T A 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.560;QD=23.98;ReadPosRankSum=1.705;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3150,333,0 chrXIII 326203 . G C 3061 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.90;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3094,348,0 chrXIII 326419 . T C 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=154;Dels=0.00;FS=4.443;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.555;QD=22.46;ReadPosRankSum=1.709;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3459,381,0 chrXIII 326503 . A T 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=188;Dels=0.00;FS=3.534;HaplotypeScore=15.3907;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.421;QD=23.19;ReadPosRankSum=1.713;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4359,474,0 chrXIII 326838 . C A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=13.2313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3247,351,0 chrXIII 327622 . A C 2713 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.6281;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.61;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2746,306,0 chrXIII 327938 . A G 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=3.071;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.144;QD=23.49;ReadPosRankSum=1.708;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3382,375,0 chrXIII 328866 . T C 2248 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2281,252,0 chrXIII 329362 . A G 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=114;Dels=0.00;FS=9.865;HaplotypeScore=6.7109;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.770;QD=23.24;ReadPosRankSum=2.939;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2682,297,0 chrXIII 329402 . T C 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=132;Dels=0.00;FS=10.075;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.038;QD=23.04;ReadPosRankSum=2.947;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:3,128:132:99:3074,336,0 chrXIII 329673 . T C 4143.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=15.5913;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.69;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4143,456,0 chrXIII 330241 . C T 4887.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.61;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4887,520,0 chrXIII 330384 . C A 4523.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.44;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4523,472,0 chrXIII 330411 . A G 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.411;DP=180;Dels=0.00;FS=9.158;HaplotypeScore=15.3002;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.879;QD=22.26;ReadPosRankSum=3.381;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:4,175:180:99:4007,438,0 chrXIII 330481 . T C 4274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=182;Dels=0.00;FS=5.459;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.239;QD=23.48;ReadPosRankSum=2.950;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:3,178:182:99:4274,465,0 chrXIII 330584 . T C 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=150;Dels=0.00;FS=4.023;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.732;QD=21.80;ReadPosRankSum=1.709;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3270,360,0 chrXIII 330689 . A T 4091.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.25;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4091,433,0 chrXIII 330819 . G A 3443.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.6841;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.77;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3443,358,0 chrXIII 332003 . T A 1554 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=18.95;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1587,168,0 chrXIII 332009 . A G 1460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=0.876;QD=17.59;ReadPosRankSum=2.391;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1493,162,0 chrXIII 332483 . G C 2660 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.45;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2693,294,0 chrXIII 332507 . C T 2841 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.20;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2874,306,0 chrXIII 332732 . T C 4052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=188;Dels=0.00;FS=2.858;HaplotypeScore=6.3328;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-1.875;QD=21.55;ReadPosRankSum=2.423;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4052,444,0 chrXIII 332749 . T C 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.1958;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=0.823;QD=19.35;ReadPosRankSum=1.698;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:3929,438,0 chrXIII 332932 . T C 4698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=206;Dels=0.00;FS=3.032;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.300;QD=22.81;ReadPosRankSum=2.378;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4698,519,0 chrXIII 333053 . T G 4040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=168;Dels=0.00;FS=2.868;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=0.007;QD=24.05;ReadPosRankSum=2.302;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:4040,447,0 chrXIII 333079 . G A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7726;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.31;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4109,450,0 chrXIII 333250 . G A 3333.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.31;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3333,357,0 chrXIII 333260 . C T 3417.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.64;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3417,360,0 chrXIII 333449 . G A 3685.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=21.55;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3685,402,0 chrXIII 333583 . C T 3165 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3198,345,0 chrXIII 333698 . C T 3751.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.3357;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.31;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3751,396,0 chrXIII 333985 . C T 3814.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.40;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3814,405,0 chrXIII 334198 . A G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=2.821;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.048;QD=21.65;ReadPosRankSum=2.314;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2783,312,0 chrXIII 334222 . G A 2584 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4609;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.03;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2617,285,0 chrXIII 334344 . C T 3378.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.94;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3378,363,0 chrXIII 334591 . T C 3837.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.56;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3837,429,0 chrXIII 334705 . A G 3843.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3843,423,0 chrXIII 334830 . T G 5522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.2908;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.271;QD=24.33;ReadPosRankSum=1.871;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:2,223:226:99:5522,612,0 chrXIII 334870 . T C 5052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=213;Dels=0.00;FS=8.334;HaplotypeScore=12.2277;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.242;QD=23.72;ReadPosRankSum=3.354;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:4,209:213:99:5052,570,0 chrXIII 335225 . A G 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.696;DP=149;Dels=0.00;FS=9.943;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;MQRankSum=-0.291;QD=23.53;ReadPosRankSum=2.953;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3506,384,0 chrXIII 335290 . G C 3567.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=14.7199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3567,396,0 chrXIII 335383 . G A 3963.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.66;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3963,415,0 chrXIII 335404 . T A 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=174;Dels=0.00;FS=2.998;HaplotypeScore=8.2830;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-2.153;QD=20.53;ReadPosRankSum=2.323;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3573,387,0 chrXIII 335531 . G A 5424.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=15.3834;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.38;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5424,600,0 chrXIII 335573 . G A 4406.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.95;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4406,460,0 chrXIII 335870 . T A 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=4.195;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=0.369;QD=21.73;ReadPosRankSum=1.665;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3368,363,0 chrXIII 335897 . A G 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=153;Dels=0.00;FS=5.862;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.559;QD=21.98;ReadPosRankSum=2.836;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3363,375,0 chrXIII 336139 . G A 3359.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.52;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3359,354,0 chrXIII 336381 . A G 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=156;Dels=0.00;FS=13.035;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.323;QD=24.00;ReadPosRankSum=2.955;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:3744,411,0 chrXIII 336566 . C T 5006.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.4583;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=25.03;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:0,196:200:99:5006,529,0 chrXIII 336784 . G A 4951.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.43;SB=-2.832e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:4951,520,0 chrXIII 336793 . C T 4775.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=21.41;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4775,502,0 chrXIII 336802 . C A 4785.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=7.4510;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=21.27;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4785,502,0 chrXIII 336845 . C T 4399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=17.4426;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-1.641;QD=19.04;ReadPosRankSum=-0.355;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:1,229:231:99:4399,483,0 chrXIII 337377 . G A 2079 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.10;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2112,222,0 chrXIII 337455 . G A 1832 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.82;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1865,201,0 chrXIII 337732 . G A 3116 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.43;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3149,333,0 chrXIII 337869 . G C 2615 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.66;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2648,297,0 chrXIII 337875 . T C 2739 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.57;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2772,303,0 chrXIII 338041 . G C 3027 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.83;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3060,339,0 chrXIII 338329 . T C 3836.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.7874;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.30;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3836,426,0 chrXIII 338515 . A G 4037.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.75;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4037,435,0 chrXIII 338590 . G T 3992.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3992,429,0 chrXIII 338851 . T C 2851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.363;QD=23.37;ReadPosRankSum=1.704;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2884,315,0 chrXIII 339145 . T C 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.8040;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.846;QD=23.87;ReadPosRankSum=1.678;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3136,345,0 chrXIII 339328 . G A 3760.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.79;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3760,411,0 chrXIII 339448 . C T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.3653;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.40;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3831,411,0 chrXIII 339496 . C T 4089.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.98;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4089,447,0 chrXIII 339545 . G A 4145.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.16;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4145,453,0 chrXIII 339619 . A G 4146.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.9233;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.39;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4146,453,0 chrXIII 339889 . A G 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.165;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.880;QD=22.55;ReadPosRankSum=2.368;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2784,306,0 chrXIII 340477 . A G 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.1464;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.337;QD=21.83;ReadPosRankSum=1.710;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3383,375,0 chrXIII 340680 . A G 3128 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=25.23;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3161,342,0 chrXIII 340711 . C T 3035 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=25.08;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3068,327,0 chrXIII 340731 . A G 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=3.283;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.100;QD=23.81;ReadPosRankSum=1.612;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2771,303,0 chrXIII 340779 . A G 2817 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=22.36;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2850,321,0 chrXIII 341020 . G A 3289.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3289,345,0 chrXIII 341092 . A G 4185.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=4.720;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.113;QD=24.62;ReadPosRankSum=1.650;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:4185,465,0 chrXIII 341111 . T C 4212.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=0.498;QD=24.21;ReadPosRankSum=1.712;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4212,456,0 chrXIII 341588 . A G 3654.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.5470;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.57;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3654,405,0 chrXIII 341663 . C A 2664 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2697,285,0 chrXIII 341834 . A G 3595.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.34;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3595,393,0 chrXIII 342173 . A G 3674.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=23.25;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3674,402,0 chrXIII 342279 . A G 2567 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.13;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2600,288,0 chrXIII 342294 . A G 2346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.926;DP=118;Dels=0.00;FS=10.237;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.116;QD=19.88;ReadPosRankSum=4.012;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:6,112:118:99:2379,267,0 chrXIII 342513 . A G 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=4.548;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.334;QD=23.82;ReadPosRankSum=1.671;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2748,303,0 chrXIII 342543 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.1989;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.93;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2952,315,0 chrXIII 342610 . C T 2600 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.49;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2633,276,0 chrXIII 342711 . A G 2932 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=19.68;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2965,324,0 chrXIII 342726 . A G 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.577;QD=17.88;ReadPosRankSum=1.706;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2411,261,0 chrXIII 342743 . A G 2153 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=17.79;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2186,240,0 chrXIII 342941 . T C 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=1.205;QD=21.78;ReadPosRankSum=1.682;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3060,345,0 chrXIII 343086 . G A 4359.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.44;SB=-2.478e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4359,465,0 chrXIII 343236 . A C 4029.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=178;Dels=0.00;FS=3.449;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.636;QD=22.63;ReadPosRankSum=1.693;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4029,447,0 chrXIII 343321 . G T 3190 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.99;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3223,351,0 chrXIII 343341 . C A 3031 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.05;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3064,333,0 chrXIII 343377 . T C 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=165;Dels=0.00;FS=6.208;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.127;QD=22.48;ReadPosRankSum=2.390;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3709,411,0 chrXIII 344023 . G A 1466 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;QD=18.79;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1499,162,0 chrXIII 344029 . T G 1414 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=17.04;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1447,159,0 chrXIII 344043 . G A 1686 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=19.60;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1719,183,0 chrXIII 344045 . C T 1604 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=18.44;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1637,180,0 chrXIII 344106 . T C 1573 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=19.18;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1606,177,0 chrXIII 344130 . A G 1090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.192;QD=18.79;ReadPosRankSum=2.365;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1123,126,0 chrXIII 344237 . A G 834 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=18.53;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:96:867,96,0 chrXIII 344258 . G A 572 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.1145;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=12.71;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:2,43:45:72:605,72,0 chrXIII 344351 . A G 1251 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=24.06;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1284,138,0 chrXIII 344400 . C T 1759 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.69;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1792,195,0 chrXIII 344475 . G A 3824.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=25.66;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3824,399,0 chrXIII 344726 . T C 5844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=21.2397;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.913;QD=22.31;ReadPosRankSum=1.692;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:1,257:262:99:5844,639,0 chrXIII 344883 . T C 5157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=255;Dels=0.00;FS=4.823;HaplotypeScore=15.8838;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.134;QD=20.22;ReadPosRankSum=1.705;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:5157,588,0 chrXIII 345132 . G A 4143.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.4913;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.28;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4143,436,0 chrXIII 345183 . T C 3610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=158;Dels=0.00;FS=7.177;HaplotypeScore=4.2795;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.166;QD=22.85;ReadPosRankSum=2.418;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3610,405,0 chrXIII 345513 . A G 3998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=189;Dels=0.00;FS=2.581;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.483;QD=21.15;ReadPosRankSum=2.397;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:3998,444,0 chrXIII 346005 . A G 4272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=182;Dels=0.00;FS=4.268;HaplotypeScore=11.0552;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.319;QD=23.47;ReadPosRankSum=1.713;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,178:182:99:4272,471,0 chrXIII 346162 . C T 4552.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.3924;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.41;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4552,478,0 chrXIII 346173 . A G 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.296;DP=214;Dels=0.00;FS=9.006;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.243;QD=18.86;ReadPosRankSum=3.411;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:4,208:214:99:4035,447,0 chrXIII 346423 . T C 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=175;Dels=0.00;FS=11.529;HaplotypeScore=17.9066;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.087;QD=22.16;ReadPosRankSum=2.936;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:3,170:175:99:3878,426,0 chrXIII 346482 . A G 3868.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.44;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3868,417,0 chrXIII 346583 . A G 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=3.513;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.218;QD=24.29;ReadPosRankSum=1.703;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2924,321,0 chrXIII 346988 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.0803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3308,354,0 chrXIII 347163 . G C 4815.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=15.0620;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.96;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4815,525,0 chrXIII 347381 . A G 6622.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=14.2138;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.60;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,292:293:99:6622,729,0 chrXIII 347461 . C T 5512.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=22.7517;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.68;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5512,583,0 chrXIII 347562 . T C 4655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.2070;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-0.545;QD=21.45;ReadPosRankSum=1.652;SB=-2.743e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:4655,501,0 chrXIII 347586 . A G 5063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=241;Dels=0.00;FS=6.068;HaplotypeScore=9.8988;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=1.013;QD=21.01;ReadPosRankSum=2.971;SB=-3.053e+03 GT:AD:DP:GQ:PL 1/1:3,236:241:99:5063,555,0 chrXIII 347627 . G A 5603.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=15.0404;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.32;SB=-3.077e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5603,592,0 chrXIII 347670 . G A 5397.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=7.5893;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.88;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5397,571,0 chrXIII 347780 . T C 4475.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=21.83;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4475,501,0 chrXIII 347796 . T C 4236.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.29;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4236,468,0 chrXIII 348582 . A T 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.109;DP=60;Dels=0.05;FS=0.000;HaplotypeScore=9.5110;MLEAC=1;MLEAF=0.500;MQ=49.87;MQ0=0;MQRankSum=-2.546;QD=1.12;ReadPosRankSum=-4.048;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,20:57:97:97,0,351 chrXIII 348585 . C T 909 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=10.3181;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=14.43;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:942,102,0 chrXIII 348896 . G A 6260.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=14.4521;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.15;SB=-3.068e+03 GT:AD:DP:GQ:PL 1/1:0,295:296:99:6260,684,0 chrXIII 349004 . A G 5942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.384;DP=249;Dels=0.00;FS=9.041;HaplotypeScore=12.7726;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.423;QD=23.86;ReadPosRankSum=3.426;SB=-3.220e+03 GT:AD:DP:GQ:PL 1/1:4,245:249:99:5942,648,0 chrXIII 349537 . T C 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=163;Dels=0.00;FS=4.260;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.516;QD=23.39;ReadPosRankSum=1.710;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:3812,417,0 chrXIII 349796 . G A 2955 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=18.2795;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.89;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2988,330,0 chrXIII 349853 . T C 4177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=179;Dels=0.00;FS=5.777;HaplotypeScore=15.0490;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-0.203;QD=23.34;ReadPosRankSum=2.938;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:3,175:179:99:4177,465,0 chrXIII 349925 . A T 5645.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.7487;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.54;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5645,604,0 chrXIII 349981 . C T 4637.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=22.96;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4637,498,0 chrXIII 349988 . A C 4224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=199;Dels=0.00;FS=4.973;HaplotypeScore=10.4243;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=-0.052;QD=21.23;ReadPosRankSum=1.680;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4224,474,0 chrXIII 350056 . A G 2928 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=18.30;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2961,327,0 chrXIII 350057 . A G 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=163;Dels=0.00;FS=2.725;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=-0.538;QD=18.97;ReadPosRankSum=2.374;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3125,342,0 chrXIII 350144 . T C 4286.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.01;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4286,474,0 chrXIII 350240 . T C 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-1.524;QD=18.52;ReadPosRankSum=1.663;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2811,306,0 chrXIII 350249 . C T 2592 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=18.00;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2625,291,0 chrXIII 350297 . G A 2366 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;QD=17.27;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2399,255,0 chrXIII 350311 . T A 1789 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=14.91;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1822,198,0 chrXIII 350323 . G A 1842 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=14.98;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:1875,207,0 chrXIII 350334 . T G 2078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.295;DP=119;Dels=0.00;FS=5.298;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=0.214;QD=17.46;ReadPosRankSum=3.340;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:4,115:119:99:2111,231,0 chrXIII 350595 . G A 4120.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.82;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4120,435,0 chrXIII 350752 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2618,282,0 chrXIII 350820 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2234,237,0 chrXIII 351244 . G C 5337.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=23.41;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:0,225:228:99:5337,582,0 chrXIII 351458 . G A 5734.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=23.03;SB=-2.922e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5734,619,0 chrXIII 351470 . C T 5620.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.22;SB=-2.913e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5620,589,0 chrXIII 351904 . G A 2948 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2981,318,0 chrXIII 352231 . C T 2107 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=21.28;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2140,228,0 chrXIII 352232 . C T 2164 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=21.64;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2197,240,0 chrXIII 352262 . A G 1915 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.95;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1948,213,0 chrXIII 352500 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=22.65;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2955,312,0 chrXIII 352504 . C T 2793 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=21.99;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2826,297,0 chrXIII 352513 . A G 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.530;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=1.185;QD=20.31;ReadPosRankSum=1.706;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2755,303,0 chrXIII 352695 . G C 4182.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.60;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,198:203:99:4182,453,0 chrXIII 352713 . G A 4239.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.30;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4239,448,0 chrXIII 352811 . A T 6557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=294;Dels=0.00;FS=3.162;HaplotypeScore=17.5710;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.602;QD=22.30;ReadPosRankSum=1.720;SB=-3.619e+03 GT:AD:DP:GQ:PL 1/1:1,292:294:99:6557,709,0 chrXIII 353429 . C T 4398.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=17.7338;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.21;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4398,460,0 chrXIII 353585 . C T 2675 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2708,282,0 chrXIII 353868 . A G 2655 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.58;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2688,294,0 chrXIII 354296 . A G 11067.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=510;Dels=0.00;FS=4.040;HaplotypeScore=41.6247;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.636;QD=21.70;ReadPosRankSum=1.664;SB=-5.220e+03 GT:AD:DP:GQ:PL 1/1:1,506:510:99:11067,1257,0 chrXIII 354537 . T C 7372.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=448;Dels=0.00;FS=3.702;HaplotypeScore=27.0978;MLEAC=2;MLEAF=1.00;MQ=60.38;MQ0=0;MQRankSum=-0.425;QD=16.46;ReadPosRankSum=1.639;SB=-5.028e+03 GT:AD:DP:GQ:PL 1/1:1,447:448:99:7372,802,0 chrXIII 355165 . T C 2154 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=24.48;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2187,237,0 chrXIII 355413 . C T 3702.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.7661;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=21.52;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3702,399,0 chrXIII 355419 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=21.65;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3789,397,0 chrXIII 355596 . G A 4138.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=128.3433;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=24.93;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4138,436,0 chrXIII 355763 . T C 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=130;Dels=0.00;FS=2.896;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.596;QD=22.89;ReadPosRankSum=2.393;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:3009,336,0 chrXIII 356021 . C T 4228.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.10;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4228,442,0 chrXIII 356149 . G A 4221.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.6652;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.26;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4221,445,0 chrXIII 356409 . G C 3076 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.07;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3109,348,0 chrXIII 356427 . T C 3198 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.63;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3231,357,0 chrXIII 356463 . C T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.32;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3272,360,0 chrXIII 356616 . A G 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=3.404;HaplotypeScore=4.9218;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.477;QD=23.35;ReadPosRankSum=1.678;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2999,327,0 chrXIII 356670 . C T 2994 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=24.34;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3027,327,0 chrXIII 356694 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.52;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2950,318,0 chrXIII 356775 . A G 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=134;Dels=0.00;FS=3.278;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=-1.396;QD=23.74;ReadPosRankSum=1.706;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3214,351,0 chrXIII 361550 . G A 127.13 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.22;MQ0=11;QD=2.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:47:18:160,18,0 chrXIII 361850 . G A 116.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.925;DP=897;Dels=0.00;FS=0.000;HaplotypeScore=155.0443;MLEAC=1;MLEAF=0.500;MQ=20.20;MQ0=146;MQRankSum=3.449;QD=0.13;ReadPosRankSum=-3.257;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:777,119:897:99:146,0,11144 chrXIII 361854 . T C 2201.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.662;DP=864;Dels=0.00;FS=0.000;HaplotypeScore=167.7197;MLEAC=1;MLEAF=0.500;MQ=20.34;MQ0=131;MQRankSum=4.625;QD=2.55;ReadPosRankSum=-0.416;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:645,210:864:99:2231,0,8841 chrXIII 362452 . A G 50.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.555;DP=424;DS;Dels=0.00;FS=205.047;HaplotypeScore=29.3198;MLEAC=2;MLEAF=1.00;MQ=10.62;MQ0=58;MQRankSum=-5.584;QD=0.12;ReadPosRankSum=5.485;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:11,405:424:9:83,9,0 chrXIII 362738 . A G 84.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.158;DP=425;Dels=0.00;FS=0.000;HaplotypeScore=16.6058;MLEAC=1;MLEAF=0.500;MQ=11.60;MQ0=239;MQRankSum=2.900;QD=0.20;ReadPosRankSum=0.785;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:389,35:425:99:114,0,1358 chrXIII 362747 . T C 166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.057;DP=431;Dels=0.00;FS=0.000;HaplotypeScore=17.4886;MLEAC=1;MLEAF=0.500;MQ=13.01;MQ0=226;MQRankSum=3.070;QD=0.39;ReadPosRankSum=-0.388;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:385,43:431:99:196,0,1722 chrXIII 362956 . G A 1644 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.99;MQ0=0;QD=9.79;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,167:168:99:1677,177,0 chrXIII 362969 . G A 1650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.372;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=0;MQRankSum=0.765;QD=10.71;ReadPosRankSum=1.147;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,153:154:99:1683,180,0 chrXIII 362992 . G A 2577 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=0;QD=17.30;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2610,276,0 chrXIII 363033 . C T 2178 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=39.61;MQ0=0;QD=18.46;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2211,234,0 chrXIII 363034 . C T 2200 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=0;QD=18.33;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2233,240,0 chrXIII 363052 . C T 3274.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=40.42;MQ0=0;QD=22.12;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3274,357,0 chrXIII 363257 . C G 2250 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.83;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2283,255,0 chrXIII 363259 . C T 2275 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.46;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2308,243,0 chrXIII 363595 . T C 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=136;Dels=0.00;FS=6.657;HaplotypeScore=5.1252;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.175;QD=21.71;ReadPosRankSum=1.412;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2986,311,0 chrXIII 363658 . C G 3420.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.59;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3420,381,0 chrXIII 364003 . T C 2428 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.58;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2461,270,0 chrXIII 364371 . C T 3549.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.01;FS=0.000;HaplotypeScore=19.9207;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.13;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3549,367,0 chrXIII 364431 . T A 4223.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=186;Dels=0.00;FS=3.481;HaplotypeScore=16.4448;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-1.451;QD=22.70;ReadPosRankSum=1.713;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4223,450,0 chrXIII 364548 . A G 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=152;Dels=0.00;FS=5.552;HaplotypeScore=17.3271;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.530;QD=22.45;ReadPosRankSum=2.848;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3412,369,0 chrXIII 364639 . G A 3182 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.05;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3215,357,0 chrXIII 364647 . T C 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=3.118;HaplotypeScore=5.4008;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.803;QD=19.38;ReadPosRankSum=1.690;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3230,363,0 chrXIII 365641 . A C 3815.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.0658;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.57;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3815,429,0 chrXIII 365704 . A T 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=171;Dels=0.00;FS=6.746;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.313;QD=22.40;ReadPosRankSum=2.406;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3830,411,0 chrXIII 366439 . G T 5796.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=22.1611;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.56;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5796,627,0 chrXIII 366578 . C T 5868.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.29;SB=-3.031e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5868,625,0 chrXIII 366629 . C G 5314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.964;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.6136;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.964;QD=21.96;ReadPosRankSum=-1.471;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:1,238:242:99:5314,559,0 chrXIII 366707 . A G 3627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.969;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=18.2656;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.336;QD=20.15;ReadPosRankSum=2.422;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3627,381,0 chrXIII 366938 . T C 4232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=168;Dels=0.00;FS=2.868;HaplotypeScore=10.5643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.346;QD=25.19;ReadPosRankSum=2.405;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:4232,462,0 chrXIII 367048 . C T 4309.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4309,457,0 chrXIII 367328 . A G 4482.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.7470;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=23.59;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:4482,486,0 chrXIII 367507 . T C 3996.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.62;MQ0=0;QD=15.73;SB=-3.108e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:3996,438,0 chrXIII 367508 . T C 3859.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.27;MQ0=0;QD=15.37;SB=-2.959e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:3859,435,0 chrXIII 367636 . T C 5435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=248;Dels=0.00;FS=8.292;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-0.075;QD=21.92;ReadPosRankSum=2.380;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:2,244:248:99:5435,583,0 chrXIII 367643 . C T 5259.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=4.1156;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=22.47;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5259,559,0 chrXIII 367662 . G A 4860.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=21.70;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4860,514,0 chrXIII 367810 . G A 4495.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=24.43;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4495,480,0 chrXIII 367874 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.0038;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=21.37;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2234,240,0 chrXIII 367889 . C T 2072 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=19.36;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2105,228,0 chrXIII 367919 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=22.79;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3133,330,0 chrXIII 367971 . G T 3422.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=23.76;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3422,366,0 chrXIII 368034 . C T 2598 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.02;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2631,282,0 chrXIII 368090 . T A 2136 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=19.24;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2169,240,0 chrXIII 368124 . A G 2347 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.48;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2380,270,0 chrXIII 368250 . A G 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=162;Dels=0.00;FS=3.230;HaplotypeScore=5.4983;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.647;QD=22.95;ReadPosRankSum=1.668;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3718,420,0 chrXIII 368331 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3488,384,0 chrXIII 368445 . C T 3850.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.06;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3850,408,0 chrXIII 369042 . T C 4079.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.70;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4079,447,0 chrXIII 369062 . A C 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=184;Dels=0.00;FS=3.206;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.495;QD=20.42;ReadPosRankSum=1.694;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:3757,414,0 chrXIII 369419 . T C 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.497;DP=144;Dels=0.00;FS=7.463;HaplotypeScore=10.5316;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.044;QD=20.57;ReadPosRankSum=1.386;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:2,139:144:99:2995,318,0 chrXIII 369465 . C T 2495 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=16.4751;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.45;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2528,273,0 chrXIII 369610 . A G 3026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=3.397;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.658;QD=23.46;ReadPosRankSum=1.652;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3059,339,0 chrXIII 369951 . T C 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=138;Dels=0.00;FS=3.003;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.337;QD=20.63;ReadPosRankSum=1.301;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:2880,318,0 chrXIII 370146 . A G 4146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=194;Dels=0.00;FS=7.177;HaplotypeScore=14.9385;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.500;QD=21.37;ReadPosRankSum=2.398;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:3,188:194:99:4146,453,0 chrXIII 370224 . A G 4464.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.1970;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=20.96;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:4464,504,0 chrXIII 370246 . C T 5192.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.28;SB=-2.953e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5192,553,0 chrXIII 370531 . T C 3660.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.40;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,167:171:99:3660,399,0 chrXIII 370539 . G A 3743.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=22.82;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3743,393,0 chrXIII 370569 . T A 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=5.309;HaplotypeScore=8.0104;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=1.424;QD=21.62;ReadPosRankSum=1.685;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3190,333,0 chrXIII 370701 . A T 1650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=4.420;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=-0.939;QD=19.88;ReadPosRankSum=1.649;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1683,180,0 chrXIII 370707 . A G 1665 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=18.71;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1698,189,0 chrXIII 370747 . T A 1935 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.37;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1968,207,0 chrXIII 370816 . C T 1926 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=70.0805;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=21.64;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1959,213,0 chrXIII 370880 . T C 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=124;Dels=0.00;FS=2.867;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;MQRankSum=-1.130;QD=20.79;ReadPosRankSum=2.370;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2611,294,0 chrXIII 370885 . T C 2616 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=22.36;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2649,294,0 chrXIII 370891 . C T 2739 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=23.02;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2772,291,0 chrXIII 371047 . A G 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=16.5473;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=0.668;QD=22.44;ReadPosRankSum=0.314;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,126:130:99:2950,333,0 chrXIII 371090 . G A 3694.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=23.83;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3694,399,0 chrXIII 371117 . A G 2952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=3.450;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=-0.526;QD=21.87;ReadPosRankSum=1.706;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2985,330,0 chrXIII 371138 . C G 2108 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.0736;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=20.67;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2141,237,0 chrXIII 371174 . C T 2105 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=21.05;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2138,228,0 chrXIII 371287 . G A 3566.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=24.76;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3566,396,0 chrXIII 371315 . G A 2862 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=23.85;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2895,312,0 chrXIII 371320 . G T 2476 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=22.11;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2509,270,0 chrXIII 371362 . C T 2584 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=20.67;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2617,285,0 chrXIII 371393 . T C 2537 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=19.08;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2570,288,0 chrXIII 371401 . G A 2727 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=19.48;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2760,291,0 chrXIII 371404 . A G 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=4.199;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;MQRankSum=1.635;QD=18.70;ReadPosRankSum=1.708;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2707,300,0 chrXIII 371467 . T C 2381 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=20.53;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2414,264,0 chrXIII 371503 . T G 3055 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=21.98;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3088,339,0 chrXIII 371524 . T C 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=2.914;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;MQRankSum=-0.939;QD=19.03;ReadPosRankSum=2.397;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:2716,300,0 chrXIII 371527 . A G 2722 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.9628;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=18.39;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2755,312,0 chrXIII 371550 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.7267;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=19.13;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3268,357,0 chrXIII 371604 . C T 2866 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=21.23;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2899,309,0 chrXIII 371677 . T C 2387 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.31;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2420,267,0 chrXIII 371738 . A G 3077 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.0517;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.22;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3110,345,0 chrXIII 371851 . A T 2466 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.49;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2499,258,0 chrXIII 371856 . A C 2327 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.75;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2360,258,0 chrXIII 371874 . A T 2143 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.22;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2176,231,0 chrXIII 371941 . T A 1997 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.69;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2030,216,0 chrXIII 372322 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3142,339,0 chrXIII 378772 . C G 2404 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=22.47;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2437,267,0 chrXIII 378811 . A G 2890 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=22.06;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2923,324,0 chrXIII 379174 . A G 4186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.624;QD=23.78;ReadPosRankSum=1.653;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4186,453,0 chrXIII 379248 . G A 4040.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.63;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4040,424,0 chrXIII 379347 . T C 3203 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=22.88;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3236,351,0 chrXIII 379468 . C T 3468.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.68;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3468,381,0 chrXIII 379646 . G A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.72;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3259,354,0 chrXIII 379813 . G A 3717.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.11;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3717,390,0 chrXIII 379976 . T A 2455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-0.187;QD=18.88;ReadPosRankSum=1.546;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2488,270,0 chrXIII 379984 . G A 2527 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=18.05;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2560,270,0 chrXIII 380333 . G A 1996 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=16.77;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2029,222,0 chrXIII 380451 . A G 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=120;Dels=0.00;FS=12.053;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.491;QD=22.36;ReadPosRankSum=2.940;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:4,114:120:99:2716,300,0 chrXIII 380830 . C T 4111.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.76;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4111,438,0 chrXIII 380997 . T C 4249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=191;Dels=0.00;FS=2.964;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.162;QD=22.25;ReadPosRankSum=2.424;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4249,462,0 chrXIII 381609 . A G 2359 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2392,264,0 chrXIII 382384 . A T 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=3.346;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.160;QD=22.50;ReadPosRankSum=1.675;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2755,294,0 chrXIII 383224 . G A 4442.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=23.75;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4442,466,0 chrXIII 383374 . C T 4317.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.21;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4317,474,0 chrXIII 383408 . A G 4905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=212;Dels=0.00;FS=6.207;HaplotypeScore=14.7746;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.280;QD=23.14;ReadPosRankSum=2.392;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4905,537,0 chrXIII 384004 . C T 4011.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.39;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4011,427,0 chrXIII 384223 . A G 4568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=193;Dels=0.00;FS=4.282;HaplotypeScore=13.6355;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.337;QD=23.67;ReadPosRankSum=1.714;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4568,504,0 chrXIII 384682 . C G 5917.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=13.9312;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.67;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:0,267:273:99:5917,663,0 chrXIII 384775 . G A 5170.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.28;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5170,544,0 chrXIII 384946 . G A 4712.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.41;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4712,499,0 chrXIII 385378 . G A 5845.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=21.4219;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.10;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,249:253:99:5845,622,0 chrXIII 385507 . A T 6542.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=19.7246;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-3.459e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:6542,703,0 chrXIII 387573 . T C 5634.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=16.5801;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.84;SB=-2.925e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5634,621,0 chrXIII 388193 . G C 5967.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=12.6520;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=22.18;SB=-2.898e+03 GT:AD:DP:GQ:PL 1/1:0,267:269:99:5967,666,0 chrXIII 388294 . G A 6989.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=28.0069;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.30;SB=-3.339e+03 GT:AD:DP:GQ:PL 1/1:0,299:300:99:6989,760,0 chrXIII 388416 . T C 5462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=241;Dels=0.00;FS=2.759;HaplotypeScore=14.2333;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=2.326;QD=22.66;ReadPosRankSum=2.377;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:2,236:241:99:5462,589,0 chrXIII 388450 . A G 5363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=231;Dels=0.00;FS=4.142;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-0.082;QD=23.22;ReadPosRankSum=1.702;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5363,585,0 chrXIII 389274 . T A 10047.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=431;Dels=0.00;FS=4.144;HaplotypeScore=27.3141;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.631;QD=23.31;ReadPosRankSum=1.700;SB=-4.368e+03 GT:AD:DP:GQ:PL 1/1:1,430:431:99:10047,1066,0 chrXIII 389880 . T G 5508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=248;Dels=0.00;FS=3.081;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.310;QD=22.21;ReadPosRankSum=1.676;SB=-3.161e+03 GT:AD:DP:GQ:PL 1/1:1,245:248:99:5508,609,0 chrXIII 390009 . G A 6850.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=19.0772;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.99;SB=-3.708e+03 GT:AD:DP:GQ:PL 1/1:0,295:298:99:6850,721,0 chrXIII 390075 . T C 6270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=268;Dels=0.00;FS=2.997;HaplotypeScore=14.2187;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.957;QD=23.40;ReadPosRankSum=2.431;SB=-2.932e+03 GT:AD:DP:GQ:PL 1/1:2,266:268:99:6270,699,0 chrXIII 390198 . T C 4958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=251;Dels=0.00;FS=3.927;HaplotypeScore=24.4888;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.105;QD=19.75;ReadPosRankSum=1.718;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:1,246:251:99:4958,543,0 chrXIII 390351 . T C 4838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=0.742;QD=21.41;ReadPosRankSum=1.717;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:4838,525,0 chrXIII 390358 . C A 4764.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.36;SB=-2.926e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4764,508,0 chrXIII 390486 . T G 5537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=242;Dels=0.00;FS=6.002;HaplotypeScore=12.7670;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.100;QD=22.88;ReadPosRankSum=2.954;SB=-3.007e+03 GT:AD:DP:GQ:PL 1/1:3,237:242:99:5537,598,0 chrXIII 390660 . G C 4113.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.6921;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.88;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,184:188:99:4113,444,0 chrXIII 390664 . C G 3936.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.7191;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.87;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3936,432,0 chrXIII 390862 . A G 2677 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.1755;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.28;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2710,300,0 chrXIII 391419 . T C 4341.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.1281;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=23.21;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4341,474,0 chrXIII 391443 . T C 4196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=4.983;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-0.412;QD=22.08;ReadPosRankSum=1.714;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4196,459,0 chrXIII 391613 . G A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.42;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3700,393,0 chrXIII 391619 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=160;Dels=0.00;FS=4.050;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-1.352;QD=21.04;ReadPosRankSum=1.665;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,154:160:99:3366,375,0 chrXIII 391769 . A T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.94;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4141,456,0 chrXIII 392000 . A G 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.656;DP=146;Dels=0.00;FS=11.046;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.157;QD=22.90;ReadPosRankSum=3.721;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:5,139:146:99:3344,369,0 chrXIII 392476 . T C 4107.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.17;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4107,462,0 chrXIII 392502 . C G 4233.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.8238;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.06;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,196:201:99:4233,462,0 chrXIII 392572 . T C 5037.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.5327;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.76;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5037,555,0 chrXIII 392802 . A G 4958.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.9828;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=23.39;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4958,543,0 chrXIII 394731 . G C 2514 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.06;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2547,282,0 chrXIII 394826 . C A 2463 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.02;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2496,261,0 chrXIII 394852 . C T 2381 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.25;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2414,258,0 chrXIII 394901 . G C 2148 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.70;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2181,246,0 chrXIII 394987 . C T 3204.99 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.1227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3238,357,0 chrXIII 395714 . T C 3283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=161;Dels=0.00;FS=3.979;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.061;QD=20.39;ReadPosRankSum=1.710;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3283,369,0 chrXIII 395840 . A G 3076 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.93;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3109,345,0 chrXIII 396483 . T C 4290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=203;Dels=0.02;FS=5.845;HaplotypeScore=19.9179;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-1.566;QD=21.13;ReadPosRankSum=2.822;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:3,194:199:99:4290,474,0 chrXIII 396594 . C A 4964.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.01;FS=0.000;HaplotypeScore=27.1954;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.20;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4964,517,0 chrXIII 396704 . C T 4543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.00;FS=4.330;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.898;QD=24.16;ReadPosRankSum=-0.046;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4543,472,0 chrXIII 396782 . T C 4450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=208;Dels=0.00;FS=6.084;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.451;QD=21.39;ReadPosRankSum=2.947;SB=-2.631e+03 GT:AD:DP:GQ:PL 1/1:3,204:208:99:4450,492,0 chrXIII 396793 . A G 4766.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.27;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4766,525,0 chrXIII 396913 . C T 3760.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.80;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3760,396,0 chrXIII 397850 . A G 3859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.7063;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.416;QD=21.56;ReadPosRankSum=1.713;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3859,426,0 chrXIII 397898 . A G 4017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=171;Dels=0.00;FS=2.928;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.208;QD=23.49;ReadPosRankSum=2.392;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:4017,444,0 chrXIII 398046 . T C 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=138;Dels=0.00;FS=2.929;HaplotypeScore=7.6432;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.943;QD=21.67;ReadPosRankSum=2.178;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:3023,330,0 chrXIII 398240 . A G 3225.28 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.0674;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.89;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3258,357,0 chrXIII 398491 . A G 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=99;Dels=0.00;FS=2.625;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.800;QD=22.23;ReadPosRankSum=2.399;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:2,95:99:99:2234,243,0 chrXIII 398785 . A G 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.556;QD=23.58;ReadPosRankSum=1.699;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2532,276,0 chrXIII 398818 . T C 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=103;Dels=0.00;FS=7.163;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.712;QD=22.88;ReadPosRankSum=2.401;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:2,100:103:99:2390,261,0 chrXIII 398994 . C T 2158 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.48;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2191,237,0 chrXIII 399106 . A G 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=110;Dels=0.00;FS=3.047;HaplotypeScore=6.2045;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.169;QD=23.29;ReadPosRankSum=2.405;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2595,288,0 chrXIII 399363 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.219;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.189;QD=25.13;ReadPosRankSum=1.705;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3250,357,0 chrXIII 399408 . C T 3168 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=23.12;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3201,336,0 chrXIII 399709 . A C 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=123;Dels=0.00;FS=6.579;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.905;QD=22.33;ReadPosRankSum=2.409;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:2,119:123:99:2780,309,0 chrXIII 400404 . G A 4181.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.65;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4181,445,0 chrXIII 400907 . A G 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.4452;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.147;QD=20.58;ReadPosRankSum=1.710;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3244,354,0 chrXIII 401197 . G C 4051.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4051,441,0 chrXIII 401884 . A G 2690 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2723,297,0 chrXIII 403758 . T C 2542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=0.260;QD=21.01;ReadPosRankSum=1.703;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2575,282,0 chrXIII 403773 . G A 2540 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.90;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2573,267,0 chrXIII 403832 . C T 1878 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=18.23;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1911,207,0 chrXIII 403898 . G T 2711 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.69;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2744,294,0 chrXIII 404319 . G A 2319 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.66;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2352,258,0 chrXIII 404584 . A G 4607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=191;Dels=0.00;FS=10.177;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.058;QD=24.12;ReadPosRankSum=2.911;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:3,188:191:99:4607,507,0 chrXIII 404983 . A G 3936.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.9224;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.11;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3936,435,0 chrXIII 405305 . A G 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.632;QD=22.49;ReadPosRankSum=1.666;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2394,261,0 chrXIII 405350 . C T 2632 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=17.0272;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.50;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2665,285,0 chrXIII 405438 . T C 3193 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.31;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3226,351,0 chrXIII 405601 . G C 3454.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=18.2995;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.19;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3454,375,0 chrXIII 405638 . G A 2655 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.1236;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=17.24;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,150:154:99:2688,294,0 chrXIII 405726 . A G 2240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=2.968;HaplotypeScore=12.1154;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;MQRankSum=-1.208;QD=20.55;ReadPosRankSum=2.359;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2273,255,0 chrXIII 406116 . C T 1868 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1901,204,0 chrXIII 406222 . A T 1991 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.53;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2024,219,0 chrXIII 406240 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=21.09;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2058,225,0 chrXIII 406355 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.6633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.28;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3243,354,0 chrXIII 406917 . G C 4429.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=19.2185;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,196:202:99:4429,498,0 chrXIII 407275 . A G 8866.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=394;Dels=0.00;FS=3.680;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=1.370;QD=22.50;ReadPosRankSum=1.706;SB=-4.368e+03 GT:AD:DP:GQ:PL 1/1:1,391:394:99:8866,993,0 chrXIII 407333 . T A 8251.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=357;Dels=0.00;FS=3.223;HaplotypeScore=26.7122;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.088;QD=23.11;ReadPosRankSum=1.693;SB=-4.561e+03 GT:AD:DP:GQ:PL 1/1:1,356:357:99:8251,877,0 chrXIII 407557 . T C 4209.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.13;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:4209,462,0 chrXIII 407752 . G A 4083.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.90;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4083,430,0 chrXIII 407891 . C T 5379.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.32;SB=-3.021e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5379,577,0 chrXIII 407898 . T C 5167.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=249;Dels=0.00;FS=3.002;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.291;QD=20.75;ReadPosRankSum=2.420;SB=-3.082e+03 GT:AD:DP:GQ:PL 1/1:2,247:249:99:5167,567,0 chrXIII 407930 . T C 5200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=18.4750;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.991;QD=20.16;ReadPosRankSum=1.665;SB=-3.185e+03 GT:AD:DP:GQ:PL 1/1:1,256:258:99:5200,588,0 chrXIII 408326 . A G 6421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.978;DP=316;Dels=0.00;FS=6.015;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=0.901;QD=20.32;ReadPosRankSum=2.971;SB=-3.859e+03 GT:AD:DP:GQ:PL 1/1:3,312:316:99:6421,726,0 chrXIII 408412 . G A 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=236;Dels=0.00;FS=4.680;HaplotypeScore=1.6385;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;MQRankSum=0.096;QD=12.57;ReadPosRankSum=0.789;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:1,234:236:99:2999,303,0 chrXIII 408413 . G A 3042 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=1.6385;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=13.00;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:3075,327,0 chrXIII 408610 . A C 1695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.040;DP=127;Dels=0.00;FS=8.613;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;MQRankSum=0.271;QD=13.35;ReadPosRankSum=1.385;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:4,122:127:99:1728,195,0 chrXIII 408620 . C A 2012 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.7877;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=16.10;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2045,219,0 chrXIII 408872 . G A 2600 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=22.61;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2633,279,0 chrXIII 408989 . C G 2186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=3.195;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=0.758;QD=22.77;ReadPosRankSum=1.083;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2219,240,0 chrXIII 409643 . A G 1079 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.46;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1112,123,0 chrXIII 409821 . G A 3161 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=26.56;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3194,333,0 chrXIII 409894 . T C 3859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.000;QD=20.64;ReadPosRankSum=1.713;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3859,432,0 chrXIII 410026 . T C 4459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.713;DP=215;Dels=0.00;FS=16.580;HaplotypeScore=13.1561;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.015;QD=20.74;ReadPosRankSum=4.731;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:8,202:215:99:4459,492,0 chrXIII 410308 . A G 4748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=201;Dels=0.00;FS=2.935;HaplotypeScore=13.4618;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.473;QD=23.62;ReadPosRankSum=2.413;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4748,516,0 chrXIII 410365 . A G 4499.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.56;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4499,492,0 chrXIII 410495 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.9256;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.01;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3572,381,0 chrXIII 410551 . A G 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.5028;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.690;QD=24.33;ReadPosRankSum=1.669;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4014,438,0 chrXIII 410660 . C T 4202.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.0581;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.55;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4202,471,0 chrXIII 411358 . C T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.02;FS=0.000;HaplotypeScore=15.4679;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.70;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3564,384,0 chrXIII 412177 . C T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.93;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3393,372,0 chrXIII 412249 . T A 2814 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.07;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2847,315,0 chrXIII 412378 . T A 3029 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=24.23;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3062,321,0 chrXIII 412745 . C T 4781.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4781,511,0 chrXIII 412783 . C T 4790.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4790,519,0 chrXIII 412878 . C G 4197.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.47;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4197,462,0 chrXIII 412883 . A G 4521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=1.157;QD=20.83;ReadPosRankSum=1.684;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:4521,492,0 chrXIII 413447 . C T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.14;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3379,351,0 chrXIII 414251 . G A 2552 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=20.75;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2585,273,0 chrXIII 414299 . G A 2778 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.58;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2811,300,0 chrXIII 414344 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.00;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2769,294,0 chrXIII 414403 . A G 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.225;QD=21.94;ReadPosRankSum=1.700;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2403,261,0 chrXIII 414447 . C T 2375 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.99;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2408,255,0 chrXIII 414462 . G C 2165 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=23.03;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2198,243,0 chrXIII 414659 . A G 2412 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9498;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.97;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2445,279,0 chrXIII 415068 . G A 2594 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2627,285,0 chrXIII 415421 . T C 2609 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.29;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2642,291,0 chrXIII 415535 . G A 2821 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.71;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2854,303,0 chrXIII 415566 . A G 2445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.309;QD=21.83;ReadPosRankSum=1.670;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2478,273,0 chrXIII 415772 . T G 2534 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.04;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2567,288,0 chrXIII 415927 . G A 3859.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=25.22;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3859,406,0 chrXIII 416053 . T G 3392.01 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=25.89;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3392,369,0 chrXIII 416114 . T C 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.101;DP=191;Dels=0.00;FS=14.187;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-0.807;QD=20.18;ReadPosRankSum=4.033;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:6,185:191:99:3854,432,0 chrXIII 416124 . C T 4196.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.7629;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.98;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4196,447,0 chrXIII 416274 . A G 4390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=208;Dels=0.00;FS=7.018;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.868;QD=21.11;ReadPosRankSum=2.402;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:4390,489,0 chrXIII 416283 . C T 4077.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.69;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4077,429,0 chrXIII 416781 . C T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.23;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3379,357,0 chrXIII 416929 . C T 3768.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3768,399,0 chrXIII 417054 . C A 3043 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.70;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3076,333,0 chrXIII 417062 . C T 3053 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.1375;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.81;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3086,336,0 chrXIII 417126 . A C 2971 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.58;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3004,327,0 chrXIII 417249 . C T 2290 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.13;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2323,258,0 chrXIII 417450 . G A 2646 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2679,294,0 chrXIII 417524 . C T 2331 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.08;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2364,249,0 chrXIII 417796 . T G 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.080;QD=24.27;ReadPosRankSum=1.698;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2484,273,0 chrXIII 418899 . A G 3039 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3072,339,0 chrXIII 418982 . C T 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.377;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.8748;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.672;QD=21.87;ReadPosRankSum=0.708;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2548,273,0 chrXIII 419424 . C T 3631.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.3263;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3631,390,0 chrXIII 419718 . C A 4211.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.14;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4211,450,0 chrXIII 419976 . G A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3306,354,0 chrXIII 420098 . A T 2990 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=13.8218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3023,321,0 chrXIII 420264 . C T 2696 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.73;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2729,288,0 chrXIII 420310 . A G 2507 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.43;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2540,279,0 chrXIII 420380 . G A 2396 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.78;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2429,255,0 chrXIII 420528 . C T 3368.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=5.1384;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=26.11;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3368,351,0 chrXIII 420568 . C T 2376 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=24.00;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2409,255,0 chrXIII 420683 . C A 2555 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=22.81;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2588,270,0 chrXIII 420689 . C T 2448 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=21.10;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2481,264,0 chrXIII 420702 . G C 2336 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.86;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2369,267,0 chrXIII 420736 . A G 2305 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=20.95;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2338,258,0 chrXIII 420786 . G A 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.352;DP=82;Dels=0.00;FS=4.667;HaplotypeScore=77.6813;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;MQRankSum=0.380;QD=22.89;ReadPosRankSum=1.183;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1910,201,0 chrXIII 420892 . C T 1600 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;QD=22.86;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1633,177,0 chrXIII 420994 . G A 136.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.28;MQ0=0;QD=12.38;SB=-3.013e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:169,18,0 chrXIII 421004 . C T 293 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.91;MQ0=0;QD=20.93;SB=-1.032e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:33:326,33,0 chrXIII 421045 . G A 593 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.84;MQ0=0;QD=22.81;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:66:626,66,0 chrXIII 421102 . A T 495 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=37.99;MQ0=0;QD=21.52;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:54:528,54,0 chrXIII 421139 . T C 293 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.97;MQ0=0;QD=20.93;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:36:326,36,0 chrXIII 421240 . T C 957 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.75;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:990,111,0 chrXIII 421266 . T G 920 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.56;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:953,105,0 chrXIII 421535 . G T 4337.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6733;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.78;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4337,468,0 chrXIII 421708 . A C 4121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.129;QD=21.92;ReadPosRankSum=1.658;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4121,465,0 chrXIII 421766 . G A 4381.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.1280;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.91;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4381,471,0 chrXIII 421865 . G A 3159 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.3488;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.23;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3192,342,0 chrXIII 421886 . A G 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-1.600;QD=23.15;ReadPosRankSum=1.679;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3089,339,0 chrXIII 421952 . T C 2767 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.27;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2800,306,0 chrXIII 422090 . T C 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.414;QD=23.72;ReadPosRankSum=1.706;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3211,354,0 chrXIII 422449 . G A 3587.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.07;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3587,390,0 chrXIII 422501 . A T 3653.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.12;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3653,390,0 chrXIII 422548 . A G 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=150;Dels=0.01;FS=4.221;HaplotypeScore=11.3425;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.709;QD=22.74;ReadPosRankSum=1.709;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3411,378,0 chrXIII 422714 . T C 4423.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.68;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4423,489,0 chrXIII 422731 . T C 4016.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.8660;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.14;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4016,444,0 chrXIII 423169 . A G 4107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=168;Dels=0.00;FS=4.191;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.691;QD=24.45;ReadPosRankSum=1.711;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4107,453,0 chrXIII 423463 . C T 4324.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=25.44;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4324,457,0 chrXIII 423541 . G A 2877 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.78;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2910,318,0 chrXIII 423603 . A T 2707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=126;Dels=0.00;FS=3.340;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.000;QD=21.48;ReadPosRankSum=1.704;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2740,291,0 chrXIII 423688 . G A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.1083;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.73;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3682,390,0 chrXIII 423691 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=166;Dels=0.00;FS=6.100;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-0.529;QD=20.42;ReadPosRankSum=2.405;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3389,378,0 chrXIII 423901 . T C 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=121;Dels=0.00;FS=3.766;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=0.335;QD=22.17;ReadPosRankSum=1.674;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2716,297,0 chrXIII 424537 . A G 4398.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.3084;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.43;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4398,477,0 chrXIII 424591 . G A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.10;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4242,448,0 chrXIII 424785 . A C 4816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.3234;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.286;QD=23.15;ReadPosRankSum=1.715;SB=-2.602e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:4816,528,0 chrXIII 424856 . A T 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=190;Dels=0.05;FS=6.704;HaplotypeScore=40.3930;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=1.709;QD=15.51;ReadPosRankSum=2.422;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:2980,327,0 chrXIII 424897 . T G 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-1.437;QD=19.08;ReadPosRankSum=1.708;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2743,309,0 chrXIII 425018 . A G 1751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.697;DP=144;Dels=0.01;FS=7.519;HaplotypeScore=116.1435;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;MQRankSum=-0.079;QD=12.16;ReadPosRankSum=4.128;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:6,131:143:99:1784,201,0 chrXIII 425123 . A T 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=169;Dels=0.00;FS=3.528;HaplotypeScore=16.7652;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.199;QD=24.43;ReadPosRankSum=1.589;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4128,447,0 chrXIII 425898 . T C 3325.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3325,363,0 chrXIII 425984 . C A 2948 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.17;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2981,315,0 chrXIII 426159 . A C 2287 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.13;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2320,252,0 chrXIII 426219 . T A 1221 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=48.5844;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=16.28;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1254,141,0 chrXIII 426590 . T C 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=122;Dels=0.00;FS=3.046;HaplotypeScore=9.8170;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.722;QD=23.18;ReadPosRankSum=2.389;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2861,309,0 chrXIII 426685 . C T 1721 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.1454;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.25;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1754,189,0 chrXIII 426934 . T C 4209.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.65;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4209,468,0 chrXIII 426949 . C A 4303.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.89;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4303,459,0 chrXIII 427123 . G A 7220.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=16.9727;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.64;SB=-3.260e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:7220,769,0 chrXIII 427279 . T C 6290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=273;Dels=0.00;FS=11.939;HaplotypeScore=15.4439;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.411;QD=23.04;ReadPosRankSum=2.967;SB=-2.820e+03 GT:AD:DP:GQ:PL 1/1:3,268:273:99:6290,684,0 chrXIII 427327 . A G 5812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=261;Dels=0.00;FS=2.580;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.938;QD=22.27;ReadPosRankSum=2.364;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:2,258:261:99:5812,642,0 chrXIII 427483 . T C 5980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.026;QD=23.36;ReadPosRankSum=1.718;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:1,254:256:99:5980,651,0 chrXIII 428198 . A T 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=177;Dels=0.00;FS=3.292;HaplotypeScore=11.9201;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.742;QD=22.18;ReadPosRankSum=1.712;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3925,426,0 chrXIII 428365 . T C 4027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=181;Dels=0.00;FS=10.147;HaplotypeScore=9.8560;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.624;QD=22.25;ReadPosRankSum=2.381;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:4027,444,0 chrXIII 428833 . A T 3578.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.5629;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3578,387,0 chrXIII 429080 . G C 3850.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.3942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3850,426,0 chrXIII 429465 . G C 5717.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=19.8056;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.16;SB=-3.224e+03 GT:AD:DP:GQ:PL 1/1:0,249:258:99:5717,621,0 chrXIII 429559 . G A 5468.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.8784;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.77;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5468,586,0 chrXIII 429941 . A T 3660.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.9888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3660,399,0 chrXIII 430167 . C A 3735.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.57;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3735,396,0 chrXIII 430438 . A G 3863.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=23.41;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3863,426,0 chrXIII 430487 . G A 4450.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=23.42;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4450,492,0 chrXIII 430624 . A C 5259.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=22.87;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,225:230:99:5259,588,0 chrXIII 430685 . G A 5065.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=21.46;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5065,538,0 chrXIII 430694 . A G 4778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=252;Dels=0.00;FS=7.223;HaplotypeScore=12.0698;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=-1.008;QD=18.96;ReadPosRankSum=2.391;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:2,250:252:99:4778,531,0 chrXIII 430776 . G A 4599.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.9469;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.22;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4599,501,0 chrXIII 430800 . T C 4292.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=22.83;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4292,468,0 chrXIII 430847 . T C 3854.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=19.76;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:3854,420,0 chrXIII 430856 . G A 3978.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=21.05;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3978,420,0 chrXIII 430895 . A T 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.3364;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-0.075;QD=19.51;ReadPosRankSum=2.354;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3532,372,0 chrXIII 430948 . G C 2771 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.79;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2804,309,0 chrXIII 431202 . C T 2513 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.16;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2546,267,0 chrXIII 431333 . C T 2710 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=26.31;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2743,288,0 chrXIII 431689 . C T 3018 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=20.39;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3051,333,0 chrXIII 431692 . A C 3054 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=20.36;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3087,336,0 chrXIII 431763 . T C 2852 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.28;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2885,315,0 chrXIII 432019 . T A 2178 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.45;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2211,246,0 chrXIII 432613 . G A 2395 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.65;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2428,261,0 chrXIII 432625 . C T 2590 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.39;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2623,276,0 chrXIII 432667 . C T 3038 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.03;FS=0.000;HaplotypeScore=39.1958;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.86;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3071,327,0 chrXIII 433010 . T A 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.573;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-1.473;QD=22.22;ReadPosRankSum=1.700;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2411,258,0 chrXIII 433052 . T A 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.402;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.463;QD=20.97;ReadPosRankSum=1.702;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2465,270,0 chrXIII 433082 . G A 2649 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=18.9444;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.07;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2682,282,0 chrXIII 433167 . T C 3677.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=25.01;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3677,408,0 chrXIII 433201 . C T 3504.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=24.00;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3504,372,0 chrXIII 433223 . A G 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=4.743;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=-1.106;QD=23.72;ReadPosRankSum=1.687;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3701,408,0 chrXIII 433274 . T C 4316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=190;Dels=0.00;FS=2.635;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.229;QD=22.72;ReadPosRankSum=2.410;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:2,186:190:99:4316,483,0 chrXIII 433376 . G A 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.9416;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;MQRankSum=-1.627;QD=14.54;ReadPosRankSum=1.714;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:2898,303,0 chrXIII 433409 . A C 2717 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.13;MQ0=0;QD=14.45;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:2750,306,0 chrXIII 433422 . A G 2760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=188;Dels=0.00;FS=6.091;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;MQRankSum=0.704;QD=14.68;ReadPosRankSum=2.963;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:3,184:188:99:2793,306,0 chrXIII 433519 . A G 4606.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=22.69;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4606,513,0 chrXIII 433544 . G T 4193.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=24.24;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4193,442,0 chrXIII 433818 . G T 2723 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.68;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2756,291,0 chrXIII 433869 . G A 2166 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.51;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2199,243,0 chrXIII 433878 . A G 2286 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.37;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2319,261,0 chrXIII 433952 . A G 2291 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.7676;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.83;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2324,258,0 chrXIII 434151 . G A 3077 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.62;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3110,327,0 chrXIII 434190 . A G 3640.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.48;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3640,402,0 chrXIII 434234 . G A 5217.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.1976;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.61;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,208:212:99:5217,547,0 chrXIII 434450 . C T 5208.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=15.9546;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.80;SB=-3.065e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:5208,573,0 chrXIII 434538 . G A 4323.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.1190;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.56;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4323,459,0 chrXIII 434776 . G A 3469.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.96;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3469,369,0 chrXIII 435540 . A G 4467.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=15.0719;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=23.15;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4467,492,0 chrXIII 435924 . T C 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.500;QD=21.73;ReadPosRankSum=1.073;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3281,343,0 chrXIII 436033 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.83;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2659,282,0 chrXIII 436081 . A G 2551 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.57;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2584,279,0 chrXIII 436089 . A C 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=131;Dels=0.00;FS=6.257;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.047;QD=20.37;ReadPosRankSum=2.412;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2702,300,0 chrXIII 436140 . C T 1952 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.59;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1985,213,0 chrXIII 436769 . G A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.8267;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3259,342,0 chrXIII 438469 . C T 4308.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=12.8760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4308,459,0 chrXIII 438807 . C T 3842.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5107;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.86;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3842,405,0 chrXIII 439185 . T C 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=158;Dels=0.00;FS=6.871;HaplotypeScore=14.7999;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.048;QD=18.73;ReadPosRankSum=2.387;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:2993,330,0 chrXIII 439294 . A T 3560.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.1857;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.07;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3560,381,0 chrXIII 439411 . A G 4210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=193;Dels=0.00;FS=6.652;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.923;QD=21.81;ReadPosRankSum=2.373;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4210,474,0 chrXIII 439557 . C T 3962.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3962,420,0 chrXIII 439990 . A G 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=148;Dels=0.00;FS=7.458;HaplotypeScore=9.4905;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.656;QD=21.75;ReadPosRankSum=2.416;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3252,357,0 chrXIII 440349 . A G 3886.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=4.325;HaplotypeScore=7.5692;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=0.916;QD=24.75;ReadPosRankSum=1.710;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3886,423,0 chrXIII 440382 . G A 3137 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.64;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3170,333,0 chrXIII 440388 . G A 2944 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.73;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2977,315,0 chrXIII 440532 . A G 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.008;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=0.328;QD=19.50;ReadPosRankSum=2.248;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2880,318,0 chrXIII 440533 . T C 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=4.741;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=1.102;QD=20.25;ReadPosRankSum=1.708;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,142:146:99:2989,330,0 chrXIII 440546 . A G 2668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=137;Dels=0.00;FS=2.579;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=-0.118;QD=19.47;ReadPosRankSum=2.395;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:2,133:137:99:2701,297,0 chrXIII 440555 . T G 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=9.740;HaplotypeScore=4.8301;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;MQRankSum=-0.431;QD=19.12;ReadPosRankSum=2.395;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2595,282,0 chrXIII 440791 . T C 2500 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=18.52;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2533,276,0 chrXIII 440792 . T C 2498 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=18.50;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2531,273,0 chrXIII 441031 . C T 2662 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=14.01;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:2695,282,0 chrXIII 441110 . T G 3304.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.4349;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.91;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3304,369,0 chrXIII 441184 . C T 3190 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.6536;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.55;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3223,348,0 chrXIII 441278 . T C 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=17.4267;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.192;QD=21.22;ReadPosRankSum=1.703;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2558,285,0 chrXIII 441469 . G A 2926 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.86;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2959,309,0 chrXIII 441637 . A T 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.133;DP=134;Dels=0.00;FS=3.007;HaplotypeScore=6.8766;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.382;QD=20.77;ReadPosRankSum=2.375;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2816,297,0 chrXIII 441655 . A T 2658 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.79;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2691,291,0 chrXIII 441991 . C T 3086 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3119,333,0 chrXIII 442173 . T C 2156 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=22.00;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2189,237,0 chrXIII 442315 . C A 2816 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.83;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2849,309,0 chrXIII 442338 . C T 3001 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.63;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3034,324,0 chrXIII 442419 . A T 2321 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.6786;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.43;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2354,249,0 chrXIII 442504 . G A 2957 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.07;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2990,315,0 chrXIII 443323 . T C 3701.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.57;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3701,408,0 chrXIII 443954 . G C 5224.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.8315;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.53;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,218:222:99:5224,579,0 chrXIII 444299 . G A 3172 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.7635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3205,339,0 chrXIII 445016 . A G 2263 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.09;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2296,252,0 chrXIII 445293 . C T 2965 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2998,327,0 chrXIII 446662 . C T 2930 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.78;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2963,321,0 chrXIII 446935 . C T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.4485;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.45;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3518,378,0 chrXIII 447488 . A G 4129.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.8993;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=0.433;QD=23.46;ReadPosRankSum=1.712;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4129,459,0 chrXIII 447610 . T A 157.06 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=1.16;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:21:190,21,0 chrXIII 448333 . G A 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.164;DP=156;Dels=0.00;FS=3.038;HaplotypeScore=4.2324;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.182;QD=16.76;ReadPosRankSum=2.006;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:2648,294,0 chrXIII 448334 . A G 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.491;DP=156;Dels=0.00;FS=12.320;HaplotypeScore=4.2324;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.433;QD=16.93;ReadPosRankSum=3.713;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:5,151:156:99:2674,297,0 chrXIII 448761 . A C 3719.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.8979;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.55;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3719,417,0 chrXIII 450562 . G A 3115 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.4423;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.63;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3148,342,0 chrXIII 450640 . A G 2809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=128;Dels=0.00;FS=6.058;HaplotypeScore=14.1234;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.913;QD=21.95;ReadPosRankSum=2.913;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:2842,321,0 chrXIII 451024 . G A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.0176;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.48;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3616,381,0 chrXIII 451375 . A C 3328.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.61;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3328,366,0 chrXIII 451391 . C T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.37;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3270,360,0 chrXIII 451494 . T C 2152 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.93;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2185,240,0 chrXIII 451502 . T C 2226 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=18.71;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2259,252,0 chrXIII 452181 . C T 4343.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=16.6854;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4343,460,0 chrXIII 452221 . G A 5662.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=24.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,231:234:99:5662,595,0 chrXIII 452960 . T G 5080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.8634;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.603;QD=23.52;ReadPosRankSum=1.684;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:5080,555,0 chrXIII 453231 . G C 5612.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=16.2037;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.92;SB=-2.825e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:5612,627,0 chrXIII 454515 . T C 4098.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4098,450,0 chrXIII 454720 . G T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.7032;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3635,390,0 chrXIII 454966 . T C 3724.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.03;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3724,405,0 chrXIII 455073 . A G 4829.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=21.2430;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.81;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:4829,531,0 chrXIII 455166 . T C 6549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=14.5888;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.611;QD=23.73;ReadPosRankSum=2.432;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:2,273:276:99:6549,723,0 chrXIII 455319 . T C 5746.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=9.8382;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.77;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:5746,651,0 chrXIII 455603 . T C 2339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.600;QD=22.93;ReadPosRankSum=1.698;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2372,264,0 chrXIII 456356 . C A 4437.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.9695;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.35;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4437,469,0 chrXIII 456415 . G A 4490.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4490,475,0 chrXIII 456517 . A G 3394.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.33;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3394,369,0 chrXIII 456535 . A T 3750.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.15;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3750,396,0 chrXIII 456718 . T G 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.083;QD=24.33;ReadPosRankSum=1.705;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3172,342,0 chrXIII 457082 . C G 2375 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2408,264,0 chrXIII 457249 . T A 2404 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.90;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2437,273,0 chrXIII 457507 . G A 2711 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.57;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2744,279,0 chrXIII 457522 . G A 2603 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.50;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2636,288,0 chrXIII 457614 . G A 2815 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.0648;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.99;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2848,300,0 chrXIII 457932 . C T 3657.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3657,390,0 chrXIII 458051 . A G 3079 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.47;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3112,345,0 chrXIII 458109 . A T 3983.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=24.29;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3983,426,0 chrXIII 458230 . G C 3475.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.72;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3475,387,0 chrXIII 458330 . A G 4592.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=18.1082;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.19;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4592,507,0 chrXIII 458366 . C A 3961.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=22.63;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3961,423,0 chrXIII 458370 . C T 3715.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.19;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3715,402,0 chrXIII 458464 . C T 6881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=25.1831;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.640;QD=24.23;ReadPosRankSum=-1.732;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:1,280:284:99:6881,739,0 chrXIII 458513 . T G 6850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=292;Dels=0.00;FS=2.724;HaplotypeScore=28.3378;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.071;QD=23.46;ReadPosRankSum=2.399;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:2,290:292:99:6850,753,0 chrXIII 459200 . T C 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=3.790;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.352;QD=24.76;ReadPosRankSum=1.637;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3615,390,0 chrXIII 459339 . T C 1892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.067;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.3698;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=1.105;QD=17.20;ReadPosRankSum=2.572;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:3,103:110:99:1925,210,0 chrXIII 459340 . T C 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.730;DP=108;Dels=0.00;FS=2.711;HaplotypeScore=4.3939;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=1.939;QD=17.41;ReadPosRankSum=2.009;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:2,104:108:99:1913,210,0 chrXIII 459508 . T C 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=97;Dels=0.00;FS=2.725;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.180;QD=23.40;ReadPosRankSum=2.399;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2303,252,0 chrXIII 459670 . A G 2903 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.04;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2936,327,0 chrXIII 459697 . G A 2946 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=25.18;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2979,312,0 chrXIII 459995 . A C 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.534;QD=19.79;ReadPosRankSum=1.576;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2665,291,0 chrXIII 460285 . A G 3801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=169;Dels=0.00;FS=3.445;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.763;QD=22.49;ReadPosRankSum=1.670;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3801,429,0 chrXIII 461207 . A T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3458,366,0 chrXIII 461530 . G A 3047 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.18;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3080,327,0 chrXIII 461631 . T G 2841 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=21.52;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2874,315,0 chrXIII 461653 . A G 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=-1.145;QD=19.75;ReadPosRankSum=1.704;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2482,267,0 chrXIII 461659 . C T 2387 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=19.25;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2420,255,0 chrXIII 462232 . C T 3600.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.68;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3600,378,0 chrXIII 462409 . A G 3825.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.11;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3825,420,0 chrXIII 462535 . G C 3559.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.24;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3559,393,0 chrXIII 462716 . G A 958 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=9.68;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:991,99,0 chrXIII 462773 . A T 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=60.91;MQ0=0;MQRankSum=-1.702;QD=21.81;ReadPosRankSum=1.642;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2541,270,0 chrXIII 462976 . A G 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=91;Dels=0.00;FS=2.869;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=1.123;QD=22.99;ReadPosRankSum=2.396;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:2125,240,0 chrXIII 463091 . C T 1867 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=23.94;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1900,201,0 chrXIII 463170 . A C 1184 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=0;QD=21.93;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1217,135,0 chrXIII 463171 . C G 1122 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=0;QD=20.78;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1155,129,0 chrXIII 463232 . C T 1476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=63.4433;MLEAC=2;MLEAF=1.00;MQ=34.36;MQ0=0;MQRankSum=1.170;QD=19.95;ReadPosRankSum=1.451;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1509,159,0 chrXIII 463247 . C T 1249 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.73;MQ0=0;QD=15.23;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1282,141,0 chrXIII 463261 . A C 1247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.99;MQ0=0;MQRankSum=-0.124;QD=14.33;ReadPosRankSum=1.691;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:1,84:87:99:1280,141,0 chrXIII 463264 . G A 1244 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.0463;MLEAC=2;MLEAF=1.00;MQ=34.57;MQ0=0;QD=13.52;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1277,135,0 chrXIII 463330 . T C 921 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.16;MQ0=0;QD=13.95;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:954,105,0 chrXIII 463337 . A T 943 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.72;MQ0=0;QD=15.72;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:976,105,0 chrXIII 463367 . C A 219.01 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=0;QD=8.42;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:27:252,27,0 chrXIII 463374 . C T 197.03 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=4.9576;MLEAC=2;MLEAF=1.00;MQ=21.03;MQ0=0;QD=8.57;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:24:230,24,0 chrXIII 463395 . C G 106.26 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.92;MQ0=0;QD=4.62;SB=-1.953e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:15:139,15,0 chrXIII 463407 . G A 105.26 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=4.78;SB=-1.933e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:15:138,15,0 chrXIII 463410 . G A 112.26 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=5.10;SB=-1.983e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:15:145,15,0 chrXIII 463412 . G A 130.13 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=5.42;SB=-2.471e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:18:163,18,0 chrXIII 463414 . G A 163.06 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=6.79;SB=-2.561e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:21:196,21,0 chrXIII 463419 . C T 300 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=0;QD=8.33;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:36:333,36,0 chrXIII 463441 . T C 844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=39.61;MQ0=0;MQRankSum=-0.866;QD=13.19;ReadPosRankSum=1.678;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:96:877,96,0 chrXIII 463709 . A T 2135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-1.477;QD=22.47;ReadPosRankSum=1.586;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2168,225,0 chrXIII 463745 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.3020;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.93;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2354,249,0 chrXIII 464030 . A T 2701 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.72;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2734,285,0 chrXIII 465031 . G A 4406.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=25.18;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4406,457,0 chrXIII 465036 . C A 4203.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=23.75;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4203,445,0 chrXIII 465055 . T G 3474.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.41;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3474,384,0 chrXIII 465545 . G A 2802 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=23.75;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2835,297,0 chrXIII 465549 . T C 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=120;Dels=0.00;FS=9.822;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-1.244;QD=22.45;ReadPosRankSum=2.908;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2727,300,0 chrXIII 465707 . C T 3041 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.39;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3074,333,0 chrXIII 465777 . G T 3911.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=25.73;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3911,412,0 chrXIII 465869 . C T 2501 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.05;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2534,264,0 chrXIII 465899 . A T 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.232;QD=21.93;ReadPosRankSum=1.666;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2314,246,0 chrXIII 465931 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.04;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2920,309,0 chrXIII 466377 . G A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.71;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3861,403,0 chrXIII 466416 . C A 3925.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.08;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3925,423,0 chrXIII 466863 . G A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3471,366,0 chrXIII 467764 . G A 3808.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.3161;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.22;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3808,417,0 chrXIII 467817 . C T 2747 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.33;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2780,294,0 chrXIII 467994 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.90;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3680,402,0 chrXIII 468051 . C T 2478 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.00;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2511,273,0 chrXIII 468156 . T C 2585 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2618,300,0 chrXIII 468328 . G A 1162 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=15.9275;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.92;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1195,126,0 chrXIII 468499 . A T 2193 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=22.38;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2226,234,0 chrXIII 468505 . A C 2031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=100;Dels=0.00;FS=4.230;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.283;QD=20.31;ReadPosRankSum=1.697;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,97:100:99:2064,231,0 chrXIII 468937 . T C 1951 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.68;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1984,219,0 chrXIII 469276 . A G 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;MQRankSum=0.291;QD=19.45;ReadPosRankSum=1.631;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2698,303,0 chrXIII 469282 . T A 2650 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=20.70;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2683,285,0 chrXIII 469297 . T C 2417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=3.878;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=0.341;QD=19.03;ReadPosRankSum=1.705;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2450,276,0 chrXIII 469459 . A G 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=3.492;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-1.151;QD=23.79;ReadPosRankSum=1.684;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3449,378,0 chrXIII 469503 . T G 2761 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.0298;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=21.91;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2794,312,0 chrXIII 469513 . C T 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.344;DP=126;Dels=0.00;FS=3.410;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=1.067;QD=20.98;ReadPosRankSum=0.485;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2677,262,0 chrXIII 469538 . G T 2357 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.86;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2390,261,0 chrXIII 469916 . C G 4142.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.22;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4142,450,0 chrXIII 470589 . A G 4786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=206;Dels=0.00;FS=5.827;HaplotypeScore=8.9446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.828;QD=23.23;ReadPosRankSum=2.878;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:4,202:206:99:4786,522,0 chrXIII 470697 . A G 3630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=154;Dels=0.00;FS=3.465;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.723;QD=23.57;ReadPosRankSum=1.709;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,150:154:99:3630,396,0 chrXIII 470916 . T C 3897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.8095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.496;QD=22.66;ReadPosRankSum=1.712;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3897,435,0 chrXIII 472484 . A G 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=167;Dels=0.00;FS=9.511;HaplotypeScore=8.4008;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.018;QD=22.80;ReadPosRankSum=2.946;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3807,420,0 chrXIII 472621 . C A 1659 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=17.65;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1692,183,0 chrXIII 472763 . C T 1010 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.42;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1043,114,0 chrXIII 473006 . A G 2717 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.93;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2750,303,0 chrXIII 473172 . T C 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=153;Dels=0.00;FS=3.274;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.370;QD=20.51;ReadPosRankSum=1.709;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3171,354,0 chrXIII 473256 . G A 4839.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.4504;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.26;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4839,528,0 chrXIII 473320 . A G 4697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=215;Dels=0.00;FS=3.238;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.298;QD=21.85;ReadPosRankSum=1.668;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4697,522,0 chrXIII 473450 . A G 2895 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.9649;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.30;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2928,327,0 chrXIII 473564 . A G 4654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.3753;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-0.850;QD=21.45;ReadPosRankSum=1.636;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:1,215:217:99:4654,507,0 chrXIII 473594 . T A 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=191;Dels=0.00;FS=4.658;HaplotypeScore=3.8882;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-1.495;QD=20.15;ReadPosRankSum=1.677;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3849,417,0 chrXIII 473599 . T G 3869.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.4656;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=20.80;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3869,426,0 chrXIII 473747 . T A 3939.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.2991;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.45;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3939,429,0 chrXIII 474227 . G A 4132.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.1918;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.48;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4132,438,0 chrXIII 474275 . C T 4281.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.78;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4281,451,0 chrXIII 474399 . T C 3310.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.81;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3310,360,0 chrXIII 474682 . G A 2404 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.90;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2437,258,0 chrXIII 474721 . G T 2049 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2082,219,0 chrXIII 474893 . G A 2325 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.72;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2358,261,0 chrXIII 474938 . C T 2777 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.40;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2810,309,0 chrXIII 475024 . G A 3516.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=22.8106;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3516,378,0 chrXIII 475108 . G A 3435.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9377;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.16;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3435,363,0 chrXIII 475126 . G A 2980 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.55;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3013,321,0 chrXIII 475202 . A G 4074.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.96;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4074,444,0 chrXIII 475652 . C T 1637 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=24.80;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1670,180,0 chrXIII 475855 . G A 1863 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,85:89:99:1896,207,0 chrXIII 476482 . A G 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.710;DP=172;Dels=0.00;FS=9.423;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=0.426;QD=22.26;ReadPosRankSum=2.935;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:3,167:172:99:3829,423,0 chrXIII 476503 . G A 3699.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.6161;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.28;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3699,393,0 chrXIII 476788 . C G 4776.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.3744;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.42;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4776,525,0 chrXIII 476911 . T A 4465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.8112;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.531;QD=21.57;ReadPosRankSum=1.699;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4465,475,0 chrXIII 476980 . G A 4410.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.72;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4410,480,0 chrXIII 476994 . A G 3960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.7188;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-1.732;QD=21.29;ReadPosRankSum=1.658;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3960,438,0 chrXIII 477051 . T C 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=173;Dels=0.00;FS=6.849;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.941;QD=21.10;ReadPosRankSum=2.392;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:3651,411,0 chrXIII 477223 . G A 3068 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.76;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3101,339,0 chrXIII 477610 . A G 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.677;DP=141;Dels=0.01;FS=5.796;HaplotypeScore=15.0567;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.518;QD=21.90;ReadPosRankSum=2.936;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:3121,345,0 chrXIII 477847 . C G 4847.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.6863;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.88;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4847,528,0 chrXIII 477882 . A G 5634.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=15.7239;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.08;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,230:234:99:5634,636,0 chrXIII 478087 . C T 4520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.4511;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.606;QD=20.36;ReadPosRankSum=-0.268;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:4520,483,0 chrXIII 478297 . T C 2782 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2815,309,0 chrXIII 478638 . T G 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=118;Dels=0.00;FS=2.869;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.594;QD=23.27;ReadPosRankSum=2.325;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2779,309,0 chrXIII 478673 . A G 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=129;Dels=0.00;FS=8.829;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.925;QD=24.68;ReadPosRankSum=2.412;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3217,348,0 chrXIII 479132 . A C 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=172;Dels=0.00;FS=3.026;HaplotypeScore=13.2752;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=1.207;QD=20.66;ReadPosRankSum=2.407;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3553,393,0 chrXIII 479146 . T C 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=169;Dels=0.00;FS=6.052;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=0.885;QD=20.90;ReadPosRankSum=2.873;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:3,164:169:99:3532,384,0 chrXIII 479345 . A G 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=174;Dels=0.00;FS=3.028;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-1.314;QD=21.40;ReadPosRankSum=2.421;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3723,426,0 chrXIII 479746 . G C 3184 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.41;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3217,363,0 chrXIII 480032 . A G 3755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.535;DP=165;Dels=0.00;FS=3.850;HaplotypeScore=9.5594;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.724;QD=22.76;ReadPosRankSum=-0.829;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3755,387,0 chrXIII 480242 . T C 3613.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=23.61;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3613,402,0 chrXIII 480327 . T C 4233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=3.680;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-1.277;QD=24.19;ReadPosRankSum=1.692;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4233,462,0 chrXIII 480385 . C A 3643.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9276;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=24.13;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3643,384,0 chrXIII 480404 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=22.59;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3264,360,0 chrXIII 480430 . G A 2618 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=19.83;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2651,282,0 chrXIII 480440 . A C 2495 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=19.05;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2528,279,0 chrXIII 480495 . C G 2104 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=16.97;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2137,228,0 chrXIII 480496 . G A 2219 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=17.75;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2252,246,0 chrXIII 480545 . G A 1976 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.80;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2009,207,0 chrXIII 480549 . G A 1664 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=15.85;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1697,180,0 chrXIII 480601 . C T 1601 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=19.29;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1634,174,0 chrXIII 480711 . C A 1916 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=26.25;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1949,207,0 chrXIII 480813 . G A 1146 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=20.84;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1179,126,0 chrXIII 481051 . G C 1409 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=18.79;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,71:75:99:1442,162,0 chrXIII 481063 . A G 1492 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=19.13;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1525,168,0 chrXIII 481103 . G A 2126 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=21.26;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2159,228,0 chrXIII 481286 . T A 2670 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.02;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2703,285,0 chrXIII 481447 . C A 2667 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.81;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2700,285,0 chrXIII 481534 . G A 2524 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.86;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2557,270,0 chrXIII 481556 . G C 2700 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=19.42;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2733,297,0 chrXIII 481610 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=18.91;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2700,297,0 chrXIII 481618 . C T 2486 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.42;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2519,276,0 chrXIII 481632 . T A 2046 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=18.27;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2079,228,0 chrXIII 481647 . G T 2107 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=19.33;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2140,240,0 chrXIII 481735 . C T 3166 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.1103;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=22.94;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3199,348,0 chrXIII 481834 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=20.73;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2666,279,0 chrXIII 482055 . G T 3000 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;QD=23.08;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3033,324,0 chrXIII 482208 . A G 323.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;DP=108;Dels=0.00;FS=233.949;HaplotypeScore=2.5689;MLEAC=1;MLEAF=0.500;MQ=34.90;MQ0=0;MQRankSum=2.309;QD=2.99;ReadPosRankSum=8.900;SB=-1.302e+01 GT:AD:DP:GQ:PL 0/1:48,60:108:99:353,0,796 chrXIII 482238 . A C 900 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=14.06;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:933,105,0 chrXIII 482719 . A G 4909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.446;QD=20.71;ReadPosRankSum=1.703;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:4909,540,0 chrXIII 482953 . T C 3982.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.9083;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.88;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3982,444,0 chrXIII 482977 . A G 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=195;Dels=0.00;FS=4.900;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=-1.459;QD=19.16;ReadPosRankSum=2.714;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:4,188:195:99:3736,411,0 chrXIII 482993 . C A 3912.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=19.86;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:3912,417,0 chrXIII 483527 . C T 3096 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.5825;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=24.57;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3129,330,0 chrXIII 484290 . C G 4932.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=18.6086;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.54;SB=-2.593e+03 GT:AD:DP:GQ:PL 1/1:0,225:229:99:4932,558,0 chrXIII 485473 . G A 5185.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.4213;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=26.06;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5185,541,0 chrXIII 485619 . T C 5930.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=18.2695;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.98;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5930,651,0 chrXIII 485712 . G A 6385.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.33;SB=-3.023e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:6385,696,0 chrXIII 485832 . T C 5521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=249;Dels=0.00;FS=4.564;HaplotypeScore=14.0033;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.718;QD=22.17;ReadPosRankSum=1.704;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:1,246:249:99:5521,612,0 chrXIII 486108 . G T 2072 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2105,231,0 chrXIII 486339 . A G 2332 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.35;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2365,264,0 chrXIII 486401 . T C 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.616;QD=21.22;ReadPosRankSum=1.694;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1943,219,0 chrXIII 486464 . T C 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.706;QD=18.13;ReadPosRankSum=1.636;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1991,222,0 chrXIII 486465 . C T 2028 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.78;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2061,222,0 chrXIII 486584 . G A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.07;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3597,378,0 chrXIII 486931 . C T 3542.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.46;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3542,384,0 chrXIII 487450 . A T 3931.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2906;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.57;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3931,426,0 chrXIII 487534 . G A 4385.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.8601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4385,465,0 chrXIII 487795 . A G 2636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=11.7961;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.015;QD=22.72;ReadPosRankSum=1.702;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2669,278,0 chrXIII 487960 . A G 2700 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2733,306,0 chrXIII 488407 . A G 3608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=157;Dels=0.00;FS=4.007;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.577;QD=22.98;ReadPosRankSum=1.688;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3608,396,0 chrXIII 488449 . A G 4418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=3.590;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.712;QD=25.10;ReadPosRankSum=1.712;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4418,477,0 chrXIII 488506 . A G 3650.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=16.5054;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.40;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3650,417,0 chrXIII 489301 . T C 3522.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.48;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3522,381,0 chrXIII 490021 . T C 4714.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.45;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4714,522,0 chrXIII 490368 . T C 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.742;QD=22.90;ReadPosRankSum=1.697;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2300,255,0 chrXIII 490383 . A G 2246 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.80;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,103:108:99:2279,252,0 chrXIII 490442 . A T 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=98;Dels=0.00;FS=4.141;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=1.119;QD=21.36;ReadPosRankSum=1.696;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2126,234,0 chrXIII 490598 . A G 4749.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.6221;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.23;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4749,519,0 chrXIII 490751 . C T 4913.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.23;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4913,537,0 chrXIII 490970 . G A 3184 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.81;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3217,348,0 chrXIII 491096 . T C 2930 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.23;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2963,324,0 chrXIII 491108 . T C 2555 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=19.50;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2588,294,0 chrXIII 491129 . T C 2197 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.62;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2230,240,0 chrXIII 491183 . G T 1919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.895;QD=21.09;ReadPosRankSum=1.351;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1952,204,0 chrXIII 491201 . A T 2002 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.00;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2035,216,0 chrXIII 491291 . T C 2822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=128;Dels=0.00;FS=2.926;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.552;QD=22.05;ReadPosRankSum=2.411;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2855,318,0 chrXIII 491444 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.71;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3459,366,0 chrXIII 491864 . T C 2559 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.87;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2592,285,0 chrXIII 491919 . C T 1996 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.70;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2029,213,0 chrXIII 491997 . G T 2334 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2367,249,0 chrXIII 492111 . C T 1803 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.46;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1836,195,0 chrXIII 492116 . T A 1706 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.87;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1739,186,0 chrXIII 492749 . G T 3721.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=23.26;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3721,396,0 chrXIII 492978 . C T 5184.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=5.2779;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.60;SB=-2.951e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5184,550,0 chrXIII 492986 . A G 4672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=238;Dels=0.00;FS=3.513;HaplotypeScore=5.9979;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.320;QD=19.63;ReadPosRankSum=1.718;SB=-2.783e+03 GT:AD:DP:GQ:PL 1/1:1,237:238:99:4672,531,0 chrXIII 494277 . T C 3440.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.6485;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.50;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3440,378,0 chrXIII 494582 . C T 2888 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=22.92;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2921,309,0 chrXIII 494727 . T G 1542 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=3.388;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.26;MQ0=0;MQRankSum=-1.010;QD=16.06;ReadPosRankSum=1.624;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1575,171,0 chrXIII 494731 . T C 1390 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.78;MQ0=0;QD=15.11;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1423,156,0 chrXIII 494734 . A G 1259 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.18;MQ0=0;QD=14.81;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1292,144,0 chrXIII 494735 . G A 1265 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=15.06;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1298,144,0 chrXIII 494743 . T A 1276 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.09;MQ0=0;QD=14.84;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1309,141,0 chrXIII 494785 . A G 1777 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;QD=18.90;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1810,198,0 chrXIII 494799 . A G 1803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=2.991;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;MQRankSum=0.603;QD=17.68;ReadPosRankSum=2.401;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:2,98:102:99:1836,207,0 chrXIII 494828 . A G 1950 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3264;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.31;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1983,219,0 chrXIII 494850 . A C 2123 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=19.66;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2156,237,0 chrXIII 494953 . C T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.0781;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=25.35;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3599,381,0 chrXIII 495115 . T C 4305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=180;Dels=0.00;FS=2.980;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.393;QD=23.92;ReadPosRankSum=2.339;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:2,176:180:99:4305,474,0 chrXIII 495304 . G A 5034.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.17;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:5034,526,0 chrXIII 495559 . A C 5382.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.4057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5382,594,0 chrXIII 496111 . T C 4726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=3.033;HaplotypeScore=9.7775;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.212;QD=24.49;ReadPosRankSum=1.696;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4726,522,0 chrXIII 496310 . T G 3095 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.27;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3128,339,0 chrXIII 496430 . T A 2959 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=24.25;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2992,327,0 chrXIII 496520 . T C 2228 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=21.42;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2261,246,0 chrXIII 496537 . A T 2302 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=21.31;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2335,252,0 chrXIII 496565 . A G 2993 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=20.09;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3026,333,0 chrXIII 496607 . T A 3515.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.9387;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=19.97;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3515,372,0 chrXIII 496613 . A C 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=181;Dels=0.00;FS=3.034;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;MQRankSum=-1.147;QD=17.75;ReadPosRankSum=2.368;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3246,351,0 chrXIII 496640 . T G 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;MQRankSum=-1.151;QD=16.54;ReadPosRankSum=1.713;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:2993,330,0 chrXIII 496646 . G T 3090 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=16.44;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3123,330,0 chrXIII 496721 . G A 4661.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=23.78;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4661,507,0 chrXIII 496739 . C T 4699.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.0378;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=23.38;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4699,504,0 chrXIII 496955 . A T 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.8501;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=1.493;QD=19.95;ReadPosRankSum=1.677;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3771,405,0 chrXIII 496985 . T C 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.6386;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.821;QD=15.79;ReadPosRankSum=1.714;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3097,345,0 chrXIII 497221 . T C 4686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.1860;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.526;QD=22.97;ReadPosRankSum=1.698;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4686,513,0 chrXIII 497523 . T G 3847.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.49;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3847,426,0 chrXIII 497568 . G T 4111.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.98;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4111,435,0 chrXIII 497891 . G A 2154 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=17.51;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2187,240,0 chrXIII 497904 . A G 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=-1.966;QD=15.51;ReadPosRankSum=2.362;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:2,110:113:99:1786,201,0 chrXIII 498159 . T C 2022 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.79;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2055,225,0 chrXIII 498543 . G A 3126 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=26.05;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3159,333,0 chrXIII 498573 . T C 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8497;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.220;QD=23.54;ReadPosRankSum=1.705;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3023,330,0 chrXIII 499915 . A T 3841.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=22.73;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3841,408,0 chrXIII 499930 . A T 3459.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.75;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3459,381,0 chrXIII 500788 . G A 2582 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.47;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2615,276,0 chrXIII 500943 . T C 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8442;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.908;QD=25.23;ReadPosRankSum=1.711;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:4163,459,0 chrXIII 501060 . A G 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.120;DP=155;Dels=0.00;FS=9.175;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.931;QD=20.60;ReadPosRankSum=2.951;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:4,151:155:99:3226,363,0 chrXIII 501062 . A G 3345.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.86;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3345,363,0 chrXIII 501084 . T C 3382.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.01;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3382,369,0 chrXIII 501121 . C T 3733.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=20.85;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3733,402,0 chrXIII 501143 . T G 4111.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.10;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4111,447,0 chrXIII 501451 . T C 3158 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.9236;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3191,348,0 chrXIII 501697 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.5894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3109,333,0 chrXIII 502432 . C G 4860.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.2141;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.37;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4860,537,0 chrXIII 502941 . A G 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=125;Dels=0.00;FS=7.838;HaplotypeScore=7.4115;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.344;QD=23.41;ReadPosRankSum=2.391;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2959,324,0 chrXIII 503695 . A T 4344.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=24.00;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4344,474,0 chrXIII 503789 . T C 3475.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.597;DP=295;Dels=0.00;FS=19.304;HaplotypeScore=3.8844;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=117;MQRankSum=2.070;QD=11.78;ReadPosRankSum=1.403;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:131,161:295:31:3475,31,0 chrXIII 504451 . A G 2118 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=37.25;MQ0=0;QD=19.08;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2151,237,0 chrXIII 504453 . A G 2124 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.25;MQ0=0;QD=19.14;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2157,240,0 chrXIII 504460 . A G 2115 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.39;MQ0=0;QD=18.55;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2148,237,0 chrXIII 504470 . A G 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;MQRankSum=0.538;QD=17.13;ReadPosRankSum=1.702;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2020,225,0 chrXIII 504480 . T C 1629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=4.273;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=38.21;MQ0=0;MQRankSum=-1.732;QD=15.22;ReadPosRankSum=1.667;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1662,195,0 chrXIII 504487 . A G 1589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;MQRankSum=-0.797;QD=15.58;ReadPosRankSum=1.697;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:1622,183,0 chrXIII 504623 . A G 2979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.132;DP=129;Dels=0.00;FS=14.452;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=0.808;QD=23.09;ReadPosRankSum=3.295;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:4,125:129:99:3012,333,0 chrXIII 504731 . A G 2556 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=0;QD=23.24;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2589,282,0 chrXIII 504746 . A C 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;MQRankSum=1.538;QD=24.23;ReadPosRankSum=0.159;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2844,309,0 chrXIII 504775 . A T 2876 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.6616;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=22.65;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2909,312,0 chrXIII 504785 . G A 2626 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=21.52;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2659,282,0 chrXIII 504829 . G A 3307.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.8119;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.34;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3307,351,0 chrXIII 505022 . G C 2628 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.54;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2661,291,0 chrXIII 505190 . C A 1508 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.32;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1541,165,0 chrXIII 505362 . G C 2010 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.1655;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2043,222,0 chrXIII 505551 . A G 3277.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3277,366,0 chrXIII 505640 . A G 4143.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.02;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4143,450,0 chrXIII 505690 . G A 3390.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.87;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3390,369,0 chrXIII 505942 . T C 1802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=93;Dels=0.00;FS=3.415;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=-0.115;QD=19.38;ReadPosRankSum=1.694;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,89:93:99:1835,204,0 chrXIII 505945 . T C 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=3.297;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;MQRankSum=-1.069;QD=19.52;ReadPosRankSum=1.658;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1868,204,0 chrXIII 506157 . G T 1921 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=21.83;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1954,207,0 chrXIII 506160 . T C 1742 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=3.534;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;MQRankSum=-0.118;QD=19.80;ReadPosRankSum=1.693;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1775,195,0 chrXIII 506166 . G C 1791 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=20.59;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1824,198,0 chrXIII 506241 . T C 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.976;QD=22.76;ReadPosRankSum=1.701;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2537,282,0 chrXIII 506403 . T C 1928 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.23;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1961,219,0 chrXIII 506838 . T C 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=4.015;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.675;QD=21.93;ReadPosRankSum=1.703;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2708,294,0 chrXIII 506868 . C G 2637 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.16;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2670,303,0 chrXIII 507002 . C T 3158 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.3925;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.29;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3191,336,0 chrXIII 507039 . G C 2728 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.93;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2761,312,0 chrXIII 507334 . T C 12.99 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=3.153;HaplotypeScore=78.1643;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=0.726;QD=0.14;ReadPosRankSum=1.695;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:6:44,6,0 chrXIII 507637 . A G 3791.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.5776;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.26;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3791,414,0 chrXIII 507712 . T C 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=157;Dels=0.00;FS=4.122;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.860;QD=22.36;ReadPosRankSum=1.710;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3510,384,0 chrXIII 507892 . A G 3159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=4.260;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.306;QD=23.06;ReadPosRankSum=1.707;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3192,348,0 chrXIII 508047 . G T 152.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.993;DP=160;Dels=0.00;FS=265.705;HaplotypeScore=33.4353;MLEAC=1;MLEAF=0.500;MQ=57.36;MQ0=0;MQRankSum=-1.242;QD=0.95;ReadPosRankSum=-3.995;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,49:160:99:182,0,1613 chrXIII 508090 . T C 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=3.772;HaplotypeScore=12.3648;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.635;QD=20.19;ReadPosRankSum=1.708;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2940,333,0 chrXIII 508389 . G A 4832.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=18.3336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4832,517,0 chrXIII 508768 . G A 3971.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.92;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3971,429,0 chrXIII 508918 . T G 3563.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3563,405,0 chrXIII 508948 . A G 3893.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.1437;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.59;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3893,438,0 chrXIII 509116 . G A 4699.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.59;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4699,516,0 chrXIII 509304 . A G 5564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.294;DP=241;Dels=0.00;FS=8.665;HaplotypeScore=16.6061;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.814;QD=23.09;ReadPosRankSum=3.381;SB=-2.869e+03 GT:AD:DP:GQ:PL 1/1:4,237:241:99:5564,609,0 chrXIII 509337 . T G 5124.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=16.7525;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.17;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:5124,564,0 chrXIII 509447 . G A 3492.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.30;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3492,378,0 chrXIII 509594 . G T 2813 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.87;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2846,300,0 chrXIII 509848 . G T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.4351;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.56;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3665,390,0 chrXIII 510373 . A T 4812.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.44;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4812,502,0 chrXIII 510475 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.22;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3343,357,0 chrXIII 510981 . T C 6816.01 PASS AC=2;AF=1.00;AN=2;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=20.2350;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=20.41;SB=-3.518e+03 GT:AD:DP:GQ:PL 1/1:0,330:334:99:6816,759,0 chrXIII 511205 . G A 3946.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.56;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3946,420,0 chrXIII 511256 . A G 4420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=183;Dels=0.01;FS=8.853;HaplotypeScore=18.5466;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;MQRankSum=-0.628;QD=24.15;ReadPosRankSum=2.423;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4420,486,0 chrXIII 511804 . C T 890 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:99:923,102,0 chrXIII 511953 . G A 1759 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.92;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1792,186,0 chrXIII 512343 . G T 3766.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.30;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3766,402,0 chrXIII 512809 . G A 3897.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.2480;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=21.53;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3897,412,0 chrXIII 513806 . C T 4146.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.03;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4146,453,0 chrXIII 513867 . C T 4330.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.47;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4330,457,0 chrXIII 514313 . C A 1137 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=12.92;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1170,126,0 chrXIII 514342 . C T 1705 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=12.2230;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=17.58;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1738,189,0 chrXIII 514656 . C T 4324.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.88;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4324,460,0 chrXIII 514896 . T C 5554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.265;DP=249;Dels=0.00;FS=9.014;HaplotypeScore=21.0238;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.584;QD=22.31;ReadPosRankSum=3.426;SB=-3.124e+03 GT:AD:DP:GQ:PL 1/1:4,245:249:99:5554,618,0 chrXIII 515220 . G A 4732.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.8535;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.66;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4732,513,0 chrXIII 515375 . G A 4589.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.4375;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.39;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4589,493,0 chrXIII 515790 . G C 5548.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=14.6533;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=22.10;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:0,247:251:99:5548,612,0 chrXIII 515992 . T C 4282.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.53;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4282,471,0 chrXIII 516109 . G A 4062.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.39;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4062,438,0 chrXIII 516134 . A G 3667.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.95;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3667,396,0 chrXIII 516303 . A G 4067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=3.404;HaplotypeScore=12.2075;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.370;QD=23.51;ReadPosRankSum=1.672;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4067,447,0 chrXIII 516485 . G A 3275.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.86;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3275,348,0 chrXIII 516489 . G A 3202 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=20.39;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3235,339,0 chrXIII 517277 . G A 3540.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=14.3669;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.29;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3540,378,0 chrXIII 517791 . G A 3270.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.83;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3270,345,0 chrXIII 517795 . A G 3174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-0.333;QD=19.84;ReadPosRankSum=1.710;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,155:160:99:3207,354,0 chrXIII 518064 . T C 4022.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.52;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4022,450,0 chrXIII 518109 . C T 4701.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=16.6492;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.11;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4701,499,0 chrXIII 518430 . T A 2942 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.92;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2975,321,0 chrXIII 518787 . C T 4233.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4233,448,0 chrXIII 518835 . A G 3640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.7945;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.413;QD=22.20;ReadPosRankSum=1.668;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3640,411,0 chrXIII 519240 . A G 1670 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1703,186,0 chrXIII 519444 . A G 2420 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6008;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2453,267,0 chrXIII 519538 . A G 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.268;DP=121;Dels=0.00;FS=4.795;HaplotypeScore=11.3855;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.768;QD=23.93;ReadPosRankSum=3.253;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:4,116:121:99:2928,321,0 chrXIII 519591 . A G 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.700;DP=124;Dels=0.00;FS=13.103;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.797;QD=23.98;ReadPosRankSum=2.943;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:99:3007,324,0 chrXIII 519681 . T C 3063 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.6227;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.03;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3096,345,0 chrXIII 519722 . A G 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4586;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.657;QD=23.78;ReadPosRankSum=1.672;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2791,306,0 chrXIII 519991 . C A 2813 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.64;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2846,297,0 chrXIII 520465 . C T 1445 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.23;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1478,156,0 chrXIII 520497 . T C 1488 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.57;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1521,168,0 chrXIII 521041 . C T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.78;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3543,375,0 chrXIII 521861 . G A 2397 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.59;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2430,264,0 chrXIII 522060 . G A 2635 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2668,285,0 chrXIII 522191 . C T 2118 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=21.61;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2151,234,0 chrXIII 522201 . G A 2034 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=19.56;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2067,225,0 chrXIII 522204 . T C 1965 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=19.08;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1998,222,0 chrXIII 522692 . A G 4206.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=185;Dels=0.00;FS=5.246;HaplotypeScore=14.8988;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.647;QD=22.74;ReadPosRankSum=2.962;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:4206,465,0 chrXIII 523330 . T C 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=130;Dels=0.00;FS=6.054;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.766;QD=22.45;ReadPosRankSum=2.412;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2952,327,0 chrXIII 523390 . T A 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.102;DP=99;Dels=0.00;FS=2.979;HaplotypeScore=11.3175;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.211;QD=23.25;ReadPosRankSum=2.400;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2335,246,0 chrXIII 523761 . A G 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.257;DP=115;Dels=0.00;FS=13.243;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.500;QD=22.82;ReadPosRankSum=3.288;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:4,110:115:99:2657,294,0 chrXIII 524040 . T C 3144 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.29;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3177,348,0 chrXIII 524154 . A G 4131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=166;Dels=0.00;FS=7.684;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.292;QD=24.89;ReadPosRankSum=2.375;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:4131,453,0 chrXIII 524178 . T G 4038.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.34;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4038,444,0 chrXIII 524221 . T G 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-1.668;QD=21.54;ReadPosRankSum=1.625;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3468,378,0 chrXIII 524234 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.1697;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.36;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3481,369,0 chrXIII 524287 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.7961;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-1.625;QD=20.41;ReadPosRankSum=1.625;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3327,369,0 chrXIII 524320 . T A 4426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=182;Dels=0.00;FS=4.405;HaplotypeScore=11.7134;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.351;QD=24.32;ReadPosRankSum=1.675;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4426,463,0 chrXIII 524617 . A C 4352.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.30;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4352,480,0 chrXIII 525420 . C A 4002.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.0535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4002,429,0 chrXIII 525498 . C T 3104 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.99;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3137,330,0 chrXIII 525537 . C T 3433.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.06;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3433,363,0 chrXIII 526419 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.41;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3264,363,0 chrXIII 526584 . T A 3135 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3168,330,0 chrXIII 526677 . T C 3090 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.14;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3123,345,0 chrXIII 526917 . C T 2216 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.51;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2249,243,0 chrXIII 526932 . T A 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-1.209;QD=21.12;ReadPosRankSum=1.634;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2293,252,0 chrXIII 526971 . T C 2399 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.42;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2432,267,0 chrXIII 527163 . C T 4040.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=25.41;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4040,426,0 chrXIII 527250 . A T 4913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=199;Dels=0.00;FS=3.829;HaplotypeScore=14.2684;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.490;QD=24.69;ReadPosRankSum=1.715;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4913,520,0 chrXIII 527489 . A G 3680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=165;Dels=0.00;FS=2.606;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.068;QD=22.30;ReadPosRankSum=2.419;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3680,399,0 chrXIII 527588 . A G 3106 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.53;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3139,345,0 chrXIII 527602 . A C 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.702;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-1.437;QD=22.28;ReadPosRankSum=1.678;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2907,321,0 chrXIII 528307 . C T 3465.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.23;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3465,381,0 chrXIII 528368 . T C 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=147;Dels=0.00;FS=5.893;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.267;QD=23.43;ReadPosRankSum=2.911;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3444,375,0 chrXIII 528469 . A G 2749 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.17;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2782,312,0 chrXIII 528502 . C T 3281.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.47;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3281,351,0 chrXIII 528781 . T C 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.339;DP=148;Dels=0.00;FS=13.224;HaplotypeScore=13.0071;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.689;QD=23.24;ReadPosRankSum=3.375;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:4,142:148:99:3439,369,0 chrXIII 528895 . G T 2242 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.4659;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=20.38;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2275,252,0 chrXIII 528907 . C T 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-1.372;QD=17.82;ReadPosRankSum=-1.372;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2260,240,0 chrXIII 528910 . T C 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;MQRankSum=-1.546;QD=17.20;ReadPosRankSum=1.705;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2269,246,0 chrXIII 528919 . C T 2457 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5050;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=16.38;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2490,264,0 chrXIII 529003 . T A 2991 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.9110;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.32;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3024,321,0 chrXIII 529114 . T C 2963 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=20.87;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2996,333,0 chrXIII 529347 . A G 2997 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3030,327,0 chrXIII 530518 . T A 2738 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=24.23;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2771,294,0 chrXIII 530525 . T G 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=3.048;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.637;QD=22.85;ReadPosRankSum=-1.170;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2707,300,0 chrXIII 530620 . C T 2800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.801;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.7959;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.703;QD=23.14;ReadPosRankSum=1.557;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2833,300,0 chrXIII 530752 . A T 2983 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.25;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3016,327,0 chrXIII 530863 . A G 3342.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.54;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3342,366,0 chrXIII 530917 . C A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3358,360,0 chrXIII 531100 . C T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.8170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3844,405,0 chrXIII 531160 . T C 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.0435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.787;QD=24.34;ReadPosRankSum=1.687;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3749,417,0 chrXIII 531873 . G T 2057 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2090,219,0 chrXIII 532150 . C T 3292.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.57;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3292,351,0 chrXIII 532182 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=13.7671;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.35;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3139,333,0 chrXIII 532289 . G A 3227.04 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.5434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.95;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3260,351,0 chrXIII 532595 . C T 2687 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=11.4201;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.57;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2720,288,0 chrXIII 532667 . A C 3002 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.7429;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.64;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:3035,339,0 chrXIII 532942 . A G 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=136;Dels=0.00;FS=3.637;HaplotypeScore=9.6144;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.259;QD=21.46;ReadPosRankSum=1.706;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:2952,324,0 chrXIII 533018 . C G 2982 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.94;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3015,333,0 chrXIII 533975 . T C 4373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=181;Dels=0.00;FS=2.333;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.406;QD=24.16;ReadPosRankSum=1.317;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:4373,486,0 chrXIII 534586 . T A 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=173;Dels=0.00;FS=6.407;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.817;QD=23.06;ReadPosRankSum=2.393;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3989,432,0 chrXIII 534609 . G T 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.514;QD=23.26;ReadPosRankSum=1.102;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3884,414,0 chrXIII 535310 . G A 4345.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.9200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4345,468,0 chrXIII 535721 . T C 2032 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.19;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2065,228,0 chrXIII 535737 . A C 1867 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.96;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1900,213,0 chrXIII 535756 . A C 1854 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.89;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1887,204,0 chrXIII 535992 . T G 1038 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.62;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1071,120,0 chrXIII 536440 . G A 1941 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=15.40;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1974,216,0 chrXIII 536833 . C T 4820.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=22.01;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4820,525,0 chrXIII 536835 . G A 4884.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=22.40;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4884,511,0 chrXIII 536848 . T A 3913.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=20.59;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3913,412,0 chrXIII 536887 . A C 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.774;QD=17.45;ReadPosRankSum=1.671;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3000,327,0 chrXIII 536982 . C T 3340.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.62;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3340,369,0 chrXIII 537574 . G A 3104 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.3039;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.25;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3137,330,0 chrXIII 537691 . C G 3050 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.11;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3083,336,0 chrXIII 537716 . A G 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=125;Dels=0.00;FS=2.795;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.914;QD=21.42;ReadPosRankSum=2.410;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2710,297,0 chrXIII 537942 . G A 3122 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.58;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3155,330,0 chrXIII 538176 . T C 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=3.930;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.172;QD=22.63;ReadPosRankSum=1.706;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2997,336,0 chrXIII 538376 . A G 2841 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=22.91;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2874,315,0 chrXIII 538521 . A G 2478 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=19.98;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2511,273,0 chrXIII 538619 . A T 765 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=98.0884;MLEAC=2;MLEAF=1.00;MQ=39.03;MQ0=0;QD=7.65;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:96:798,96,0 chrXIII 538680 . C T 1001 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=45.34;MQ0=0;QD=11.00;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1034,111,0 chrXIII 538764 . C T 2430 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.95;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2463,261,0 chrXIII 538772 . A G 2775 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=21.35;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2808,309,0 chrXIII 539007 . G A 2509 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.90;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2542,264,0 chrXIII 539541 . A G 4917.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=15.4081;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.95;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4917,549,0 chrXIII 539622 . A G 5378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.366;DP=240;Dels=0.00;FS=9.104;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.769;QD=22.41;ReadPosRankSum=3.388;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:4,235:240:99:5378,582,0 chrXIII 539865 . A G 4669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=256;Dels=0.00;FS=2.876;HaplotypeScore=14.3864;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.570;QD=18.24;ReadPosRankSum=2.392;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:2,254:256:99:4669,504,0 chrXIII 540075 . A G 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-0.367;QD=20.14;ReadPosRankSum=1.690;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3323,369,0 chrXIII 540088 . C A 3094 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=18.87;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3127,342,0 chrXIII 540105 . T C 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=174;Dels=0.00;FS=6.457;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-1.080;QD=20.09;ReadPosRankSum=2.351;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3496,381,0 chrXIII 540307 . T C 2502 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=21.20;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2535,276,0 chrXIII 540383 . C T 3734.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.2469;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.96;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3734,411,0 chrXIII 540423 . G C 3853.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.89;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3853,426,0 chrXIII 540446 . A T 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=169;Dels=0.00;FS=5.203;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=-0.277;QD=20.46;ReadPosRankSum=1.691;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3458,366,0 chrXIII 540486 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=17.82;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3098,330,0 chrXIII 540505 . A G 2560 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=145.3484;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;QD=14.38;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,178:178:99:2593,294,0 chrXIII 540526 . C T 2876 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=16.07;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:2909,309,0 chrXIII 540777 . T A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=20.27;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3487,378,0 chrXIII 540826 . C G 2566 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=19.2767;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=20.20;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2599,288,0 chrXIII 541041 . C T 1821 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1854,195,0 chrXIII 541095 . T A 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.779;QD=21.27;ReadPosRankSum=1.617;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2586,285,0 chrXIII 541246 . A G 3196 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=22.04;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3229,366,0 chrXIII 541511 . T C 2532 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.4884;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=15.44;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:2565,279,0 chrXIII 541716 . C T 4516.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.5706;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=24.41;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4516,481,0 chrXIII 541747 . C T 3782.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.72;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3782,394,0 chrXIII 541852 . T C 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.097;HaplotypeScore=8.5432;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.503;QD=23.74;ReadPosRankSum=1.709;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3585,399,0 chrXIII 542119 . T A 4820.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.2215;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.47;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4820,519,0 chrXIII 542277 . C T 4381.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=20.3370;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.72;SB=-2.968e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:4381,468,0 chrXIII 542556 . C T 1667 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=15.9743;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.66;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:1700,186,0 chrXIII 542650 . A G 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=184;Dels=0.00;FS=2.894;HaplotypeScore=12.9322;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.644;QD=22.63;ReadPosRankSum=2.369;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:4163,450,0 chrXIII 542926 . T A 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.514;QD=24.12;ReadPosRankSum=1.705;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3193,342,0 chrXIII 543143 . T C 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=6.620;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.335;QD=23.31;ReadPosRankSum=2.398;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3357,378,0 chrXIII 543227 . A G 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=165;Dels=0.00;FS=2.984;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.026;QD=23.03;ReadPosRankSum=2.420;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3800,420,0 chrXIII 543392 . T C 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.488;QD=22.20;ReadPosRankSum=1.708;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3186,351,0 chrXIII 543962 . C A 2693 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.22;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2726,288,0 chrXIII 544007 . A G 2774 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.51;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2807,303,0 chrXIII 544616 . T C 5122.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=12.6848;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=21.34;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:5122,561,0 chrXIII 544655 . G A 5700.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=7.8264;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=22.09;SB=-3.273e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5700,618,0 chrXIII 544798 . A G 5103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=235;Dels=0.00;FS=2.922;HaplotypeScore=13.8869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.904;QD=21.71;ReadPosRankSum=2.429;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:2,233:235:99:5103,567,0 chrXIII 544897 . T C 4213.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.06;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4213,465,0 chrXIII 544984 . T C 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=157;Dels=0.00;FS=5.427;HaplotypeScore=5.8412;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.452;QD=19.90;ReadPosRankSum=1.710;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3158,345,0 chrXIII 545060 . G C 3179 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.87;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3212,354,0 chrXIII 545135 . C A 3102 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=21.39;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3135,333,0 chrXIII 545520 . C T 6178.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=19.7626;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.13;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:6178,664,0 chrXIII 545586 . A G 4249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=195;Dels=0.00;FS=5.904;HaplotypeScore=15.5159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.620;QD=21.79;ReadPosRankSum=2.839;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:3,190:195:99:4249,456,0 chrXIII 545665 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=19.24;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3675,393,0 chrXIII 545686 . A G 3949.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.0876;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-1.307;QD=18.45;ReadPosRankSum=1.716;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:3949,441,0 chrXIII 546319 . T C 3680.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.5933;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.27;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3680,420,0 chrXIII 547141 . A G 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=3.788;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.398;QD=23.55;ReadPosRankSum=1.704;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2930,321,0 chrXIII 547216 . G C 2952 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.7779;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.71;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2985,324,0 chrXIII 547440 . T A 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.337;DP=111;Dels=0.00;FS=13.969;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=0.152;QD=16.72;ReadPosRankSum=4.410;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:7,104:111:99:1889,201,0 chrXIII 547444 . G T 1911 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=17.22;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1944,207,0 chrXIII 547537 . C T 2641 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=144;Dels=0.00;FS=2.774;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;MQRankSum=-0.043;QD=18.34;ReadPosRankSum=1.442;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2674,291,0 chrXIII 547540 . T C 2568 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=135;Dels=0.00;FS=2.736;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=-1.037;QD=19.02;ReadPosRankSum=1.312;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2601,291,0 chrXIII 547541 . A G 2571 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=19.48;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2604,297,0 chrXIII 547731 . G A 3607.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=24.37;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3607,378,0 chrXIII 548019 . G C 3540.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3540,399,0 chrXIII 548115 . G A 3332.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.50;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3332,354,0 chrXIII 548625 . T C 4433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.363;DP=182;Dels=0.00;FS=2.415;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.073;QD=24.36;ReadPosRankSum=3.411;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:4,176:182:99:4433,486,0 chrXIII 548999 . G C 2720 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=16.09;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:2753,306,0 chrXIII 549187 . C T 3733.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.90;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3733,405,0 chrXIII 549372 . A G 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.115;QD=23.55;ReadPosRankSum=1.664;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2412,264,0 chrXIII 549556 . A G 2745 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2778,300,0 chrXIII 549772 . A G 2912 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2945,324,0 chrXIII 549834 . T C 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=92;Dels=0.00;FS=3.617;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.038;QD=22.17;ReadPosRankSum=1.694;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2073,231,0 chrXIII 549952 . A G 3787.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=16.8732;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.67;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3787,414,0 chrXIII 550458 . C T 5262.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.98;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5262,570,0 chrXIII 551044 . T C 3993.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-1.240;QD=24.50;ReadPosRankSum=1.668;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3993,432,0 chrXIII 551083 . G A 3936.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=22.24;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3936,420,0 chrXIII 551093 . G A 3936.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=20.50;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3936,432,0 chrXIII 551147 . G A 3690.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.5731;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=19.95;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3690,393,0 chrXIII 551159 . C T 3644.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.47;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3644,396,0 chrXIII 551554 . T G 3536.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=15.1309;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.81;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3536,390,0 chrXIII 552041 . G A 3881.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.2725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3881,411,0 chrXIII 552227 . A G 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=155;Dels=0.00;FS=3.067;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.710;QD=22.11;ReadPosRankSum=1.687;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3427,375,0 chrXIII 552305 . G A 3886.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.29;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3886,406,0 chrXIII 552364 . G A 4605.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=24.89;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4605,487,0 chrXIII 552466 . T G 214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.434;DP=175;Dels=0.00;FS=3.420;HaplotypeScore=182.9748;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.391;QD=1.22;ReadPosRankSum=4.442;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:7,167:175:30:247,30,0 chrXIII 552615 . T C 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=156;Dels=0.00;FS=3.020;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.890;QD=23.90;ReadPosRankSum=2.418;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3729,408,0 chrXIII 553019 . C T 2904 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=19.76;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2937,318,0 chrXIII 553020 . T A 2837 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.43;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2870,318,0 chrXIII 553045 . A G 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=4.260;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-0.306;QD=17.60;ReadPosRankSum=1.707;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2427,267,0 chrXIII 553241 . A C 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=3.142;HaplotypeScore=10.1870;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-0.736;QD=24.60;ReadPosRankSum=1.711;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:4157,465,0 chrXIII 553315 . C T 3194 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.2103;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.02;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3227,345,0 chrXIII 553712 . G T 4662.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.7838;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.79;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4662,493,0 chrXIII 554314 . A G 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=161;Dels=0.00;FS=2.707;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=-0.359;QD=21.27;ReadPosRankSum=2.404;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3424,384,0 chrXIII 554323 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=21.61;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3436,372,0 chrXIII 554339 . C T 3190 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;QD=19.69;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3223,354,0 chrXIII 554367 . G T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=20.10;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3249,345,0 chrXIII 554399 . A G 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;MQRankSum=-0.754;QD=18.56;ReadPosRankSum=1.712;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3188,351,0 chrXIII 554401 . T C 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.412;DP=173;Dels=0.00;FS=4.599;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;MQRankSum=-0.230;QD=17.82;ReadPosRankSum=0.971;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3116,325,0 chrXIII 554421 . T C 3196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=4.746;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;MQRankSum=-0.811;QD=18.47;ReadPosRankSum=1.612;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3229,366,0 chrXIII 554456 . C T 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.184;DP=141;Dels=0.00;FS=3.658;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;MQRankSum=1.212;QD=16.29;ReadPosRankSum=2.202;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:3,137:141:99:2330,255,0 chrXIII 554457 . T C 2267 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=16.19;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2300,255,0 chrXIII 554514 . G C 1777 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=17.09;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,100:104:99:1810,207,0 chrXIII 554580 . T C 2009 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=20.50;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2042,225,0 chrXIII 556549 . A T 2216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.096;QD=20.15;ReadPosRankSum=1.700;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2249,240,0 chrXIII 558929 . C T 2257 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.01;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2290,249,0 chrXIII 559312 . A C 4001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=3.139;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.901;QD=23.40;ReadPosRankSum=1.692;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4001,447,0 chrXIII 561265 . G A 5147.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5147,541,0 chrXIII 562752 . A G 3050 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.21;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3083,345,0 chrXIII 563338 . G C 6117.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=14.5468;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.74;SB=-3.332e+03 GT:AD:DP:GQ:PL 1/1:0,263:269:99:6117,681,0 chrXIII 564933 . A G 4280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=176;Dels=0.00;FS=2.923;HaplotypeScore=14.1004;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.148;QD=24.32;ReadPosRankSum=2.365;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:2,172:176:99:4280,471,0 chrXIII 565188 . G T 3462.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.6456;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.63;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3462,366,0 chrXIII 565315 . T A 3112 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.72;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3145,330,0 chrXIII 565352 . C T 2916 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.1145;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.78;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2949,321,0 chrXIII 565610 . G A 3397.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.8365;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.98;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3397,357,0 chrXIII 566017 . A G 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=133;Dels=0.00;FS=8.598;HaplotypeScore=11.0793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.704;QD=22.11;ReadPosRankSum=2.356;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:2,129:133:99:2974,333,0 chrXIII 566147 . G A 4311.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.05;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4311,456,0 chrXIII 566283 . C T 3915.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.73;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3915,417,0 chrXIII 566332 . C T 4425.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.31;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4425,474,0 chrXIII 566498 . G A 3976.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=25.65;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3976,426,0 chrXIII 566527 . T A 3786.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.6448;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=23.96;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3786,397,0 chrXIII 566540 . T C 3574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=160;Dels=0.00;FS=7.037;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-0.641;QD=22.34;ReadPosRankSum=2.419;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3574,390,0 chrXIII 566650 . G A 3522.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.32;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3522,372,0 chrXIII 566965 . A G 2325 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=143;Dels=0.00;FS=2.492;HaplotypeScore=2.6935;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;MQRankSum=0.331;QD=16.26;ReadPosRankSum=2.923;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:3,140:143:99:2358,258,0 chrXIII 566967 . G A 2342 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=3.4975;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=16.49;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2375,258,0 chrXIII 566975 . T C 2248 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=15.09;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2281,252,0 chrXIII 566994 . C T 1980 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=12.86;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2013,213,0 chrXIII 567012 . A G 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=3.069;HaplotypeScore=5.2349;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;MQRankSum=-0.346;QD=13.55;ReadPosRankSum=1.686;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:2079,231,0 chrXIII 567163 . A G 3563.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=22.99;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3563,396,0 chrXIII 568072 . T A 3830.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.8443;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.79;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3830,408,0 chrXIII 568220 . G A 3315.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.38;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3315,348,0 chrXIII 568443 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2667,279,0 chrXIII 568527 . G A 4075.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.8418;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.15;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:4075,427,0 chrXIII 568577 . A G 3568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=166;Dels=0.00;FS=4.393;HaplotypeScore=6.7004;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-0.430;QD=21.49;ReadPosRankSum=1.627;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3568,393,0 chrXIII 568585 . A G 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=4.325;HaplotypeScore=7.4289;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.960;QD=21.28;ReadPosRankSum=1.710;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3383,372,0 chrXIII 569569 . T C 2901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=3.182;HaplotypeScore=8.9384;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.276;QD=22.32;ReadPosRankSum=1.705;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2934,327,0 chrXIII 569606 . C T 2573 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.2433;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=19.95;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2606,279,0 chrXIII 569867 . C T 3566.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3566,373,0 chrXIII 570511 . C G 3135 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.7082;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3168,351,0 chrXIII 572476 . T C 4670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=196;Dels=0.00;FS=3.240;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.196;QD=23.83;ReadPosRankSum=1.714;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:4670,519,0 chrXIII 572646 . C T 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.055;QD=21.81;ReadPosRankSum=-1.654;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2978,330,0 chrXIII 572747 . G C 3279.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=24.11;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3279,360,0 chrXIII 572794 . T A 2657 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=20.92;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2690,291,0 chrXIII 572799 . A G 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.736;DP=128;Dels=0.00;FS=11.776;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=-1.417;QD=19.34;ReadPosRankSum=3.723;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:5,120:128:99:2509,276,0 chrXIII 572971 . A T 1846 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=19.64;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1879,207,0 chrXIII 572972 . T C 1754 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=18.46;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1787,207,0 chrXIII 572974 . C A 1861 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=20.68;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1894,210,0 chrXIII 572995 . C T 2151 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=19.73;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2184,231,0 chrXIII 573027 . C T 2311 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=20.63;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2344,255,0 chrXIII 573111 . T G 3460.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.37;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3460,384,0 chrXIII 574872 . T C 4908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=218;Dels=0.00;FS=9.776;HaplotypeScore=10.9020;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.412;QD=22.51;ReadPosRankSum=2.968;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:3,214:218:99:4908,552,0 chrXIII 575959 . A C 2454 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2487,273,0 chrXIII 579159 . T C 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=4.093;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.408;QD=22.93;ReadPosRankSum=1.681;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3174,351,0 chrXIII 579347 . T C 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.0670;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.029;QD=23.07;ReadPosRankSum=1.654;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3124,342,0 chrXIII 579452 . T C 5096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.188;DP=218;Dels=0.00;FS=5.237;HaplotypeScore=15.5221;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.316;QD=23.38;ReadPosRankSum=3.292;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:4,214:218:99:5096,570,0 chrXIII 579535 . C T 4812.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.7812;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.43;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:4812,502,0 chrXIII 579707 . A G 4763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.965;DP=200;Dels=0.00;FS=5.759;HaplotypeScore=8.6329;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.005;QD=23.82;ReadPosRankSum=2.915;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:4763,519,0 chrXIII 579851 . G A 4275.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4275,454,0 chrXIII 579968 . T C 3751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=162;Dels=0.00;FS=3.529;HaplotypeScore=11.1792;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.061;QD=23.15;ReadPosRankSum=1.689;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3751,417,0 chrXIII 580121 . A G 4660.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.66;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4660,507,0 chrXIII 581966 . C T 2645 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.41;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2678,294,0 chrXIII 582869 . A G 3321.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.42;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3321,360,0 chrXIII 584328 . C T 3039 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3072,336,0 chrXIII 585609 . A G 2638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.217;QD=23.55;ReadPosRankSum=1.701;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2671,300,0 chrXIII 585681 . A G 2295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=92;Dels=0.00;FS=3.510;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;MQRankSum=-0.678;QD=24.95;ReadPosRankSum=1.694;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2328,252,0 chrXIII 585807 . A C 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=133;Dels=0.00;FS=8.379;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.950;QD=24.26;ReadPosRankSum=2.413;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3260,354,0 chrXIII 585859 . G A 3388.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.86;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3388,369,0 chrXIII 585987 . A G 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=131;Dels=0.00;FS=2.752;HaplotypeScore=9.4988;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.766;QD=24.50;ReadPosRankSum=2.393;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:3243,357,0 chrXIII 586147 . C G 3275.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.08;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3275,363,0 chrXIII 586462 . G A 3673.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=25.51;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3673,387,0 chrXIII 586528 . T C 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.7961;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.379;QD=23.50;ReadPosRankSum=1.705;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3041,333,0 chrXIII 586731 . T C 2240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=3.762;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;MQRankSum=0.308;QD=20.74;ReadPosRankSum=1.667;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2273,249,0 chrXIII 586744 . C T 2208 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.97;MQ0=0;QD=20.64;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2241,234,0 chrXIII 586753 . T C 2070 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=19.17;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2103,228,0 chrXIII 586759 . T C 2124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.826;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;MQRankSum=-0.577;QD=19.14;ReadPosRankSum=1.701;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2157,240,0 chrXIII 586795 . T G 1972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=105;Dels=0.00;FS=3.501;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;MQRankSum=-0.656;QD=18.78;ReadPosRankSum=1.698;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2005,222,0 chrXIII 587075 . G A 3526.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3526,375,0 chrXIII 587357 . G A 4305.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=18.2795;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.60;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4305,457,0 chrXIII 587600 . A G 1467 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.747;QD=17.46;ReadPosRankSum=2.917;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,81:84:99:1500,168,0 chrXIII 588597 . T C 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.543;DP=207;Dels=0.00;FS=3.701;HaplotypeScore=7.2868;MLEAC=2;MLEAF=1.00;MQ=39.09;MQ0=0;MQRankSum=1.223;QD=16.15;ReadPosRankSum=-0.187;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:1,203:207:99:3344,348,0 chrXIII 588606 . C T 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.192;DP=187;Dels=0.00;FS=3.610;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=0;MQRankSum=1.583;QD=15.80;ReadPosRankSum=0.540;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:2988,315,0 chrXIII 588609 . C T 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.277;DP=175;Dels=0.00;FS=3.797;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.71;MQ0=0;MQRankSum=-0.426;QD=15.31;ReadPosRankSum=0.683;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:2712,291,0 chrXIII 588618 . T C 1588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.002;DP=162;Dels=0.00;FS=3.635;HaplotypeScore=68.5841;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=0;MQRankSum=1.701;QD=9.80;ReadPosRankSum=7.993;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:33,129:162:99:1621,166,0 chrXIII 588627 . C T 261.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.651;DP=147;Dels=0.03;FS=2.134;HaplotypeScore=69.5281;MLEAC=1;MLEAF=0.500;MQ=29.48;MQ0=0;MQRankSum=0.746;QD=1.78;ReadPosRankSum=-2.023;SB=-6.130e+02 GT:AD:DP:GQ:PL 0/1:66,76:142:68:291,0,68 chrXIII 588630 . T C 232 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.077;DP=143;Dels=0.00;FS=3.296;HaplotypeScore=48.0939;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;MQRankSum=0.435;QD=1.62;ReadPosRankSum=4.335;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:8,135:143:33:265,33,0 chrXIII 588636 . T C 67.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.275;DP=145;Dels=0.00;FS=2.215;HaplotypeScore=29.3811;MLEAC=1;MLEAF=0.500;MQ=31.03;MQ0=0;MQRankSum=-1.216;QD=0.46;ReadPosRankSum=-3.115;SB=-3.270e+02 GT:AD:DP:GQ:PL 0/1:97,48:145:97:97,0,98 chrXIII 588642 . T C 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.173;DP=155;Dels=0.00;FS=4.247;HaplotypeScore=73.8990;MLEAC=1;MLEAF=0.500;MQ=32.16;MQ0=0;MQRankSum=-3.020;QD=0.16;ReadPosRankSum=2.515;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:131,24:155:55:55,0,115 chrXIII 588651 . T A 52.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.740;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=73.3680;MLEAC=1;MLEAF=0.500;MQ=33.97;MQ0=0;MQRankSum=0.990;QD=0.30;ReadPosRankSum=5.290;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:24,24:176:9:84,9,0 chrXIII 588657 . T A 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.969;DP=149;Dels=0.00;FS=8.075;HaplotypeScore=412.0853;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=0;MQRankSum=-2.814;QD=0.31;ReadPosRankSum=-4.077;SB=-3.997e+01 GT:AD:DP:GQ:PL 1/1:139,8:149:9:78,9,0 chrXIII 588669 . T C 2062 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.01;FS=7.037;HaplotypeScore=270.6292;MLEAC=2;MLEAF=1.00;MQ=35.04;MQ0=0;MQRankSum=1.718;QD=12.20;ReadPosRankSum=2.420;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:2095,231,0 chrXIII 588673 . G T 2423 SnpCluster AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=36.58;MQ0=0;QD=13.03;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:2456,264,0 chrXIII 588678 . A T 2902 SnpCluster AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=2.6884;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;QD=13.62;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:2935,306,0 chrXIII 588684 . G T 3194 SnpCluster AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=13.83;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:3227,339,0 chrXIII 588685 . G T 3188 SnpCluster AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=40.99;MQ0=0;QD=13.68;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:3221,345,0 chrXIII 588905 . G C 3053 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.6587;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;QD=20.49;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,144:149:99:3086,339,0 chrXIII 589511 . T C 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.888;QD=22.26;ReadPosRankSum=1.703;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2682,297,0 chrXIII 589689 . T C 3058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.069;QD=24.46;ReadPosRankSum=1.677;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3091,345,0 chrXIII 589788 . A C 2520 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.91;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2553,285,0 chrXIII 590388 . T C 2836 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.0359;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=19.83;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2869,324,0 chrXIII 590486 . T C 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.9837;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.551;QD=24.33;ReadPosRankSum=1.709;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3723,405,0 chrXIII 590547 . G A 2695 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.3795;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.91;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2728,294,0 chrXIII 590621 . T C 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.789;DP=158;Dels=0.00;FS=9.717;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-1.006;QD=19.22;ReadPosRankSum=2.955;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3070,336,0 chrXIII 590631 . T C 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.281;QD=19.41;ReadPosRankSum=1.689;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3138,342,0 chrXIII 590706 . T C 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=158;Dels=0.00;FS=3.386;HaplotypeScore=20.5233;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.827;QD=18.22;ReadPosRankSum=1.688;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:2912,324,0 chrXIII 590823 . G A 3042 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.88;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3075,330,0 chrXIII 591701 . G A 6958.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=22.6822;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.24;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:0,284:287:99:6958,727,0 chrXIII 591930 . G A 6140.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=10.8723;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.85;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:6140,663,0 chrXIII 593048 . C T 3673.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.0622;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.73;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3673,396,0 chrXIII 593072 . T C 3852.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.27;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3852,423,0 chrXIII 593252 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=24.60;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3837,408,0 chrXIII 593277 . T A 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.460;QD=24.56;ReadPosRankSum=1.688;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3881,408,0 chrXIII 593397 . G A 5371.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=17.3911;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.41;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,216:220:99:5371,565,0 chrXIII 593685 . A G 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=210;Dels=0.00;FS=5.238;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.549;QD=12.53;ReadPosRankSum=3.351;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:4,204:210:99:2664,297,0 chrXIII 593840 . G A 3476.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3476,366,0 chrXIII 594280 . T A 5892.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-3.220e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:5892,642,0 chrXIII 594379 . T C 5200.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=224;Dels=0.00;FS=2.979;HaplotypeScore=13.3935;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.437;QD=23.21;ReadPosRankSum=2.295;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:2,220:224:99:5200,576,0 chrXIII 594708 . A G 3907.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.98;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3907,429,0 chrXIII 595305 . T C 3541.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.5623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3541,396,0 chrXIII 595697 . T C 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=143;Dels=0.00;FS=2.849;HaplotypeScore=9.5107;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.632;QD=23.20;ReadPosRankSum=2.415;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3317,366,0 chrXIII 595929 . T C 4161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=183;Dels=0.00;FS=3.001;HaplotypeScore=11.5455;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.559;QD=22.74;ReadPosRankSum=2.369;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:4161,453,0 chrXIII 596083 . G A 5003.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.9828;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.82;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5003,532,0 chrXIII 596122 . T C 4829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.9113;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.127;QD=23.22;ReadPosRankSum=1.698;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:1,204:208:99:4829,525,0 chrXIII 596412 . T A 3731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.210;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.4041;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.730;QD=22.48;ReadPosRankSum=2.300;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3731,405,0 chrXIII 596760 . T C 3507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=142;Dels=0.00;FS=3.031;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.375;QD=24.70;ReadPosRankSum=2.397;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3507,387,0 chrXIII 596917 . G A 3352.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3352,366,0 chrXIII 597167 . A G 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=127;Dels=0.00;FS=2.877;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.326;QD=22.83;ReadPosRankSum=2.411;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2932,315,0 chrXIII 597636 . A C 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=142;Dels=0.00;FS=3.399;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.965;QD=24.17;ReadPosRankSum=1.707;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,139:142:99:3432,375,0 chrXIII 597709 . G C 3461.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.07;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3461,381,0 chrXIII 597731 . A G 3167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.7188;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.342;QD=21.40;ReadPosRankSum=1.473;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3200,357,0 chrXIII 597758 . G C 2846 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.77;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2879,324,0 chrXIII 597926 . G T 3495.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.79;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3495,378,0 chrXIII 598154 . G A 3322.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.5350;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.30;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3322,369,0 chrXIII 598520 . T C 4283.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.2365;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.78;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4283,474,0 chrXIII 598633 . C T 4168.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=14.7746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4168,442,0 chrXIII 599023 . T C 4848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=213;Dels=0.00;FS=2.572;HaplotypeScore=7.8442;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.519;QD=22.76;ReadPosRankSum=2.938;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:3,208:213:99:4848,531,0 chrXIII 599192 . T C 4070.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.00;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4070,444,0 chrXIII 599343 . T C 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=144;Dels=0.00;FS=5.928;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.500;QD=22.93;ReadPosRankSum=2.951;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:3302,372,0 chrXIII 599439 . A G 3306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=156;Dels=0.00;FS=7.831;HaplotypeScore=10.5864;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.477;QD=21.19;ReadPosRankSum=2.417;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:2,150:156:99:3306,375,0 chrXIII 599730 . A G 3099.02 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-4.285;DP=196;Dels=0.00;FS=13.775;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=1;MQRankSum=5.692;QD=15.81;ReadPosRankSum=-0.932;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:19,177:196:26:3132,26,0 chrXIII 599732 . C T 3226.07 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.084;DP=195;Dels=0.00;FS=11.662;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=1;MQRankSum=6.104;QD=16.54;ReadPosRankSum=-1.903;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:18,177:195:34:3259,34,0 chrXIII 599735 . T C 3023.42 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.590;DP=193;Dels=0.00;FS=11.411;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.19;MQ0=1;MQRankSum=6.253;QD=15.67;ReadPosRankSum=-2.239;SB=-1.787e+03 GT:AD:DP:GQ:PL 0/1:19,174:193:7:3053,0,7 chrXIII 599751 . C T 2820.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;DP=201;Dels=0.00;FS=24.428;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=43.23;MQ0=1;MQRankSum=7.436;QD=14.03;ReadPosRankSum=-1.703;SB=-1.805e+03 GT:AD:DP:GQ:PL 0/1:26,175:201:99:2850,0,205 chrXIII 599875 . G A 3439.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.298;DP=163;Dels=0.00;FS=5.819;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=31.30;MQ0=0;MQRankSum=2.957;QD=21.10;ReadPosRankSum=1.727;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:3,159:163:99:3439,369,0 chrXIII 599886 . C T 3082 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.97;MQ0=0;QD=19.14;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3115,330,0 chrXIII 599901 . T C 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.515;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=37.98;MQ0=0;MQRankSum=-1.374;QD=17.89;ReadPosRankSum=1.710;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2806,309,0 chrXIII 599973 . C T 4047.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.7910;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=22.36;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4047,427,0 chrXIII 600354 . A G 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=165;Dels=0.00;FS=3.013;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=2;MQRankSum=-1.084;QD=20.78;ReadPosRankSum=2.359;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3428,378,0 chrXIII 600548 . C A 3215 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=3;QD=24.36;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:3248,342,0 chrXIII 600549 . G A 3162 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.80;MQ0=3;QD=24.70;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:3195,339,0 chrXIII 600558 . C T 2976 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=8;QD=23.62;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:6,120:126:99:3009,321,0 chrXIII 600564 . T A 2728 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=9;QD=23.12;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,111:118:99:2761,294,0 chrXIII 600765 . C T 1990 filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=12.5518;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=16;QD=18.77;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2023,216,0 chrXIII 600819 . C T 1751 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.264;DP=104;Dels=0.00;FS=3.921;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=33.77;MQ0=30;MQRankSum=-0.749;QD=16.84;ReadPosRankSum=-0.749;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:14,90:104:99:1784,186,0 chrXIII 600902 . A G 3069 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=22.90;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3102,345,0 chrXIII 600928 . C T 3154 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=24.83;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3187,336,0 chrXIII 601104 . A T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.50;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3431,369,0 chrXIII 601213 . T C 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=3.310;HaplotypeScore=7.0656;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=-1.543;QD=22.29;ReadPosRankSum=1.711;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3722,414,0 chrXIII 601257 . A C 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=163;Dels=0.00;FS=3.013;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;MQRankSum=-1.039;QD=14.95;ReadPosRankSum=2.419;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:2470,276,0 chrXIII 601259 . G A 2484 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.02;FS=0.000;HaplotypeScore=93.2056;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=14.87;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:2517,276,0 chrXIII 601346 . A G 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=171;Dels=0.00;FS=3.879;HaplotypeScore=9.7663;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-1.064;QD=22.19;ReadPosRankSum=1.550;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3795,414,0 chrXIII 601355 . C T 3892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=180;Dels=0.00;FS=3.943;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.846;QD=21.62;ReadPosRankSum=1.712;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:3892,420,0 chrXIII 601700 . G A 5274.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.4430;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.54;SB=-3.000e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5274,553,0 chrXIII 601760 . T C 4326.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.7086;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=22.65;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4326,477,0 chrXIII 601986 . C T 3341.01 filter AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=15.1236;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=19;QD=20.13;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3341,360,0 chrXIII 602096 . C T 4118.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=34.40;MQ0=1;QD=21.79;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4118,435,0 chrXIII 602111 . T C 4064.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=1;QD=21.28;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4064,444,0 chrXIII 602408 . T A 4941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-0.090;QD=24.10;ReadPosRankSum=0.668;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4941,517,0 chrXIII 602462 . T C 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.393;DP=184;Dels=0.00;FS=15.801;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=-0.982;QD=21.23;ReadPosRankSum=3.412;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:4,180:184:99:3906,426,0 chrXIII 602464 . A T 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-1.264;QD=21.10;ReadPosRankSum=1.713;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3925,426,0 chrXIII 602564 . A G 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=1;MQRankSum=-1.627;QD=20.68;ReadPosRankSum=1.714;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4094,450,0 chrXIII 602603 . G A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.3644;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=1;QD=22.72;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3453,363,0 chrXIII 602618 . T C 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=150;Dels=0.00;FS=3.378;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=1;MQRankSum=0.234;QD=21.86;ReadPosRankSum=1.709;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3279,357,0 chrXIII 602663 . T C 3467.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=24.59;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3467,381,0 chrXIII 602744 . G A 3776.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=23.17;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3776,399,0 chrXIII 602774 . T C 3375.01 filter AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=20;QD=19.74;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,162:171:99:3375,381,0 chrXIII 602975 . C T 2498 filter AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=33;QD=17.72;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2531,267,0 chrXIII 603002 . A G 1510 filter AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=23.91;MQ0=57;QD=11.53;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:35,95:131:99:1543,174,0 chrXIII 603044 . C T 1799 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.37;MQ0=43;QD=14.28;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:26,100:126:99:1832,198,0 chrXIII 603083 . T C 2948 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=149;Dels=0.00;FS=3.106;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=12;MQRankSum=-1.176;QD=19.79;ReadPosRankSum=1.606;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:12,137:149:99:2981,324,0 chrXIII 603086 . T C 2935 filter AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.35;MQ0=10;QD=19.83;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:6,138:148:99:2968,324,0 chrXIII 603125 . C T 3093 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=41.15;MQ0=0;QD=18.63;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3126,336,0 chrXIII 603131 . A G 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=156;Dels=0.00;FS=3.010;HaplotypeScore=3.5109;MLEAC=2;MLEAF=1.00;MQ=42.08;MQ0=0;MQRankSum=-0.585;QD=18.51;ReadPosRankSum=1.462;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:2920,318,0 chrXIII 603225 . C T 3698.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=25.86;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3698,393,0 chrXIII 603461 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.446;DP=169;Dels=0.00;FS=4.234;HaplotypeScore=13.4898;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.379;QD=22.02;ReadPosRankSum=-0.010;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3721,411,0 chrXIII 603521 . C T 4835.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.4072;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.05;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4835,505,0 chrXIII 603572 . T C 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=187;Dels=0.00;FS=2.581;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-0.485;QD=22.47;ReadPosRankSum=2.250;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:2,183:187:99:4202,459,0 chrXIII 603797 . G A 3573.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.51;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3573,384,0 chrXIII 604098 . G A 3709.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.18;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3709,393,0 chrXIII 604342 . A G 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=136;Dels=0.00;FS=3.031;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-0.471;QD=19.25;ReadPosRankSum=2.413;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:2,131:136:99:2651,291,0 chrXIII 604354 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.14;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2950,312,0 chrXIII 604624 . T C 4282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=177;Dels=0.00;FS=2.822;HaplotypeScore=12.7087;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.948;QD=24.19;ReadPosRankSum=2.422;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:2,173:177:99:4282,471,0 chrXIII 605013 . T C 3504.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.299;QD=21.90;ReadPosRankSum=2.388;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3504,384,0 chrXIII 605014 . G A 3569.01 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=22.45;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3569,381,0 chrXIII 605018 . G C 3505.01 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1657;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=21.50;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3505,384,0 chrXIII 605203 . T C 5015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=229;Dels=0.00;FS=10.423;HaplotypeScore=17.4969;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-0.123;QD=21.90;ReadPosRankSum=2.943;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:3,225:229:99:5015,549,0 chrXIII 605479 . C T 2377 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.87;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2410,261,0 chrXIII 605741 . G A 2050 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.12;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2083,219,0 chrXIII 605895 . A G 2755 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.58;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2788,303,0 chrXIII 605946 . A G 1995 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.00;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,91:95:99:2028,219,0 chrXIII 605971 . C A 2636 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.12;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2669,282,0 chrXIII 606166 . C T 5218.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.6289;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.05;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5218,561,0 chrXIII 606299 . C T 6245.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-3.111e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:6245,667,0 chrXIII 606602 . A C 4217.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=173;Dels=0.00;FS=12.328;HaplotypeScore=16.3324;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.629;QD=24.38;ReadPosRankSum=2.959;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:3,168:173:99:4217,459,0 chrXIII 606680 . C T 4400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.5115;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.818;QD=22.22;ReadPosRankSum=0.325;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4400,465,0 chrXIII 606688 . C G 4143.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.61;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4143,462,0 chrXIII 606777 . T C 3803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=3.441;HaplotypeScore=5.0880;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.643;QD=23.77;ReadPosRankSum=1.601;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3803,417,0 chrXIII 606800 . C T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.73;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3434,381,0 chrXIII 606804 . C T 3518.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.99;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3518,369,0 chrXIII 606892 . A G 4768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=216;Dels=0.00;FS=2.569;HaplotypeScore=11.9885;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.392;QD=22.07;ReadPosRankSum=2.427;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:2,214:216:99:4768,519,0 chrXIII 607553 . C T 4322.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4322,460,0 chrXIII 607855 . C T 4424.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.3049;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.78;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4424,477,0 chrXIII 608020 . T G 4664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.010;QD=24.29;ReadPosRankSum=0.992;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4664,486,0 chrXIII 608168 . C T 4547.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.19;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4547,498,0 chrXIII 608200 . A G 4142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=168;Dels=0.00;FS=5.387;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.824;QD=24.65;ReadPosRankSum=2.897;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:3,163:168:99:4142,456,0 chrXIII 608238 . G A 4136.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.37;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4136,444,0 chrXIII 608255 . A G 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=159;Dels=0.00;FS=3.009;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-0.131;QD=22.77;ReadPosRankSum=2.388;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3620,396,0 chrXIII 608340 . C T 3394.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3394,357,0 chrXIII 608372 . G A 2534 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2567,279,0 chrXIII 608587 . A T 2400 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2433,267,0 chrXIII 608937 . T C 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.091;DP=204;Dels=0.00;FS=30.032;HaplotypeScore=121.0719;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;MQRankSum=1.680;QD=12.50;ReadPosRankSum=-0.874;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:28,176:204:99:2583,136,0 chrXIII 608946 . T C 1870.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.175;DP=205;Dels=0.00;FS=3.960;HaplotypeScore=129.5289;MLEAC=1;MLEAF=0.500;MQ=28.48;MQ0=0;MQRankSum=0.871;QD=9.12;ReadPosRankSum=1.442;SB=-1.125e+03 GT:AD:DP:GQ:PL 0/1:97,108:205:93:1900,0,93 chrXIII 608955 . T C 1497.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.057;DP=212;Dels=0.00;FS=5.679;HaplotypeScore=161.8863;MLEAC=1;MLEAF=0.500;MQ=28.16;MQ0=0;MQRankSum=1.836;QD=7.06;ReadPosRankSum=-0.748;SB=-9.060e+02 GT:AD:DP:GQ:PL 0/1:115,97:212:99:1527,0,208 chrXIII 608961 . C T 1256.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.599;DP=213;Dels=0.00;FS=2.410;HaplotypeScore=137.8673;MLEAC=1;MLEAF=0.500;MQ=27.85;MQ0=0;MQRankSum=1.341;QD=5.90;ReadPosRankSum=-1.691;SB=-7.420e+02 GT:AD:DP:GQ:PL 0/1:129,84:213:99:1286,0,317 chrXIII 608967 . T C 476.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.805;DP=207;Dels=0.00;FS=8.247;HaplotypeScore=202.4411;MLEAC=1;MLEAF=0.500;MQ=28.79;MQ0=0;MQRankSum=-0.037;QD=2.30;ReadPosRankSum=4.106;SB=-5.830e+02 GT:AD:DP:GQ:PL 0/1:79,126:207:99:506,0,910 chrXIII 608979 . C T 482.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.358;DP=236;Dels=0.00;FS=10.136;HaplotypeScore=149.4674;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=2;MQRankSum=0.333;QD=2.04;ReadPosRankSum=0.361;SB=-2.550e+02 GT:AD:DP:GQ:PL 0/1:168,68:236:99:512,0,1002 chrXIII 608985 . C T 987.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.439;DP=244;Dels=0.00;FS=34.793;HaplotypeScore=107.7073;MLEAC=1;MLEAF=0.500;MQ=28.64;MQ0=2;MQRankSum=-0.434;QD=4.05;ReadPosRankSum=0.335;SB=-1.051e+03 GT:AD:DP:GQ:PL 0/1:88,156:244:99:1017,0,500 chrXIII 608991 . T C 224.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-10.370;DP=241;Dels=0.00;FS=67.171;HaplotypeScore=129.6439;MLEAC=1;MLEAF=0.500;MQ=27.93;MQ0=3;MQRankSum=2.499;QD=0.93;ReadPosRankSum=-1.337;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:168,71:241:99:254,0,1197 chrXIII 608997 . A C 110.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.917;DP=231;Dels=0.00;FS=46.179;HaplotypeScore=124.6399;MLEAC=1;MLEAF=0.500;MQ=27.83;MQ0=3;MQRankSum=1.736;QD=0.48;ReadPosRankSum=-6.536;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:195,31:231:99:140,0,1498 chrXIII 609000 . T C 58.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.917;DP=215;Dels=0.00;FS=28.585;HaplotypeScore=85.6284;MLEAC=1;MLEAF=0.500;MQ=27.67;MQ0=3;MQRankSum=2.326;QD=0.27;ReadPosRankSum=-6.096;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:194,21:215:88:88,0,1519 chrXIII 609003 . C T 1536.21 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=5.881;DP=204;Dels=0.00;FS=49.877;HaplotypeScore=63.7097;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=3;MQRankSum=-0.205;QD=7.53;ReadPosRankSum=1.236;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:33,171:204:16:1569,16,0 chrXIII 609006 . C T 1806 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.277;DP=199;Dels=0.00;FS=13.536;HaplotypeScore=84.7382;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=3;MQRankSum=1.785;QD=9.08;ReadPosRankSum=0.369;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:1839,198,0 chrXIII 609015 . T C 563.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.845;DP=205;Dels=0.00;FS=46.523;HaplotypeScore=40.6500;MLEAC=1;MLEAF=0.500;MQ=26.90;MQ0=14;MQRankSum=2.274;QD=2.75;ReadPosRankSum=-2.212;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:152,53:205:99:593,0,995 chrXIII 609021 . A C 697.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.644;DP=214;Dels=0.00;FS=39.820;HaplotypeScore=34.0618;MLEAC=1;MLEAF=0.500;MQ=26.66;MQ0=20;MQRankSum=2.562;QD=3.26;ReadPosRankSum=-0.870;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:155,56:214:99:727,0,980 chrXIII 609024 . T C 687.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.955;DP=218;Dels=0.00;FS=37.517;HaplotypeScore=30.3138;MLEAC=1;MLEAF=0.500;MQ=26.31;MQ0=24;MQRankSum=2.809;QD=3.15;ReadPosRankSum=0.389;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:160,58:218:99:717,0,981 chrXIII 609037 . G A 866.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.245;DP=232;Dels=0.03;FS=177.881;HaplotypeScore=76.7193;MLEAC=1;MLEAF=0.500;MQ=26.20;MQ0=32;MQRankSum=3.442;QD=3.73;ReadPosRankSum=0.710;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,81:224:99:896,0,873 chrXIII 609039 . T C 767.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.826;DP=230;Dels=0.03;FS=107.472;HaplotypeScore=63.5901;MLEAC=1;MLEAF=0.500;MQ=26.01;MQ0=35;MQRankSum=3.301;QD=3.33;ReadPosRankSum=4.026;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:160,62:222:99:797,0,997 chrXIII 609057 . C T 1143.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DP=200;Dels=0.00;FS=55.078;HaplotypeScore=25.7337;MLEAC=1;MLEAF=0.500;MQ=25.77;MQ0=44;MQRankSum=1.264;QD=5.72;ReadPosRankSum=6.437;SB=-1.930e+02 GT:AD:DP:GQ:PL 0/1:110,90:200:99:1173,0,750 chrXIII 609063 . G A 1139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.783;DP=181;Dels=0.00;FS=71.093;HaplotypeScore=26.5287;MLEAC=1;MLEAF=0.500;MQ=24.37;MQ0=45;MQRankSum=3.646;QD=6.29;ReadPosRankSum=4.110;SB=-1.140e+02 GT:AD:DP:GQ:PL 0/1:99,81:181:99:1169,0,505 chrXIII 609072 . C T 939.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.232;DP=154;Dels=0.00;FS=79.140;HaplotypeScore=7.6683;MLEAC=1;MLEAF=0.500;MQ=23.48;MQ0=43;MQRankSum=2.944;QD=6.10;ReadPosRankSum=4.543;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:87,66:154:99:969,0,406 chrXIII 609084 . T C 898.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;DP=144;Dels=0.00;FS=67.125;HaplotypeScore=56.4029;MLEAC=1;MLEAF=0.500;MQ=22.91;MQ0=41;MQRankSum=3.410;QD=6.24;ReadPosRankSum=3.485;SB=-1.860e+02 GT:AD:DP:GQ:PL 0/1:81,63:144:99:928,0,286 chrXIII 609086 . A G 832.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.364;DP=145;Dels=0.00;FS=67.125;HaplotypeScore=52.7297;MLEAC=1;MLEAF=0.500;MQ=22.83;MQ0=42;MQRankSum=2.848;QD=5.74;ReadPosRankSum=2.635;SB=-1.690e+02 GT:AD:DP:GQ:PL 0/1:81,63:145:99:862,0,307 chrXIII 609090 . T C 997.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.177;DP=141;Dels=0.00;FS=39.993;HaplotypeScore=80.7955;MLEAC=1;MLEAF=0.500;MQ=22.75;MQ0=42;MQRankSum=2.014;QD=7.07;ReadPosRankSum=0.505;SB=-2.880e+02 GT:AD:DP:GQ:PL 0/1:52,88:141:99:1027,0,120 chrXIII 609091 . G A 891.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.420;DP=141;Dels=0.00;FS=10.350;HaplotypeScore=80.7955;MLEAC=1;MLEAF=0.500;MQ=22.75;MQ0=42;MQRankSum=0.652;QD=6.32;ReadPosRankSum=-1.320;SB=-2.990e+02 GT:AD:DP:GQ:PL 0/1:66,75:141:99:921,0,264 chrXIII 609102 . C T 616.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=127.4688;MLEAC=1;MLEAF=0.500;MQ=22.06;MQ0=42;MQRankSum=-1.430;QD=4.97;ReadPosRankSum=-3.683;SB=-2.800e+02 GT:AD:DP:GQ:PL 0/1:59,65:124:99:646,0,250 chrXIII 609105 . C T 577.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.800;DP=113;Dels=0.00;FS=12.926;HaplotypeScore=131.3446;MLEAC=1;MLEAF=0.500;MQ=22.29;MQ0=36;MQRankSum=-0.676;QD=5.11;ReadPosRankSum=-5.141;SB=-1.450e+02 GT:AD:DP:GQ:PL 0/1:60,53:113:99:607,0,216 chrXIII 609129 . C T 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.815;DP=80;Dels=0.00;FS=51.151;HaplotypeScore=76.7875;MLEAC=1;MLEAF=0.500;MQ=20.81;MQ0=16;MQRankSum=-1.809;QD=0.13;ReadPosRankSum=0.274;SB=-6.086e-03 GT:AD:DP:GQ:PL 0/1:33,47:80:40:40,0,188 chrXIII 609132 . T C 228.19 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.228;DP=74;Dels=0.00;FS=42.542;HaplotypeScore=97.0213;MLEAC=2;MLEAF=1.00;MQ=21.64;MQ0=10;MQRankSum=2.093;QD=3.08;ReadPosRankSum=-3.140;SB=-1.752e+02 GT:AD:DP:GQ:PL 1/1:37,36:74:8:260,8,0 chrXIII 609135 . C T 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;DP=75;Dels=0.00;FS=73.093;HaplotypeScore=80.1943;MLEAC=1;MLEAF=0.500;MQ=21.89;MQ0=8;MQRankSum=-2.853;QD=0.35;ReadPosRankSum=1.676;SB=0.259 GT:AD:DP:GQ:PL 0/1:20,55:75:56:56,0,119 chrXIII 609147 . C T 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.927;DP=59;Dels=0.00;FS=20.711;HaplotypeScore=81.8278;MLEAC=1;MLEAF=0.500;MQ=22.91;MQ0=0;MQRankSum=-1.489;QD=0.18;ReadPosRankSum=-3.912;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:24,35:59:40:40,0,68 chrXIII 609159 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.662;DP=63;Dels=0.00;FS=62.244;HaplotypeScore=71.0690;MLEAC=2;MLEAF=1.00;MQ=23.62;MQ0=0;MQRankSum=-2.435;QD=0.38;ReadPosRankSum=4.354;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:11,52:63:6:55,6,0 chrXIII 609180 . T C 1189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.710;DP=94;Dels=0.00;FS=35.169;HaplotypeScore=49.1652;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=0;MQRankSum=2.925;QD=12.65;ReadPosRankSum=1.808;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:22,72:94:99:1222,138,0 chrXIII 609225 . C T 2404 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.761;DP=157;Dels=0.00;FS=82.583;HaplotypeScore=3.9331;MLEAC=2;MLEAF=1.00;MQ=26.04;MQ0=4;MQRankSum=3.498;QD=15.31;ReadPosRankSum=6.389;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:29,128:157:99:2437,243,0 chrXIII 609231 . C T 2467 filter AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=24.6401;MLEAC=2;MLEAF=1.00;MQ=26.09;MQ0=4;QD=14.43;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2500,270,0 chrXIII 609267 . T C 123.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.319;DP=218;Dels=0.00;FS=73.398;HaplotypeScore=114.4945;MLEAC=1;MLEAF=0.500;MQ=24.82;MQ0=28;MQRankSum=0.458;QD=0.56;ReadPosRankSum=5.142;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:156,61:218:99:153,0,1252 chrXIII 609268 . G A 114.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.828;DP=221;Dels=0.00;FS=94.930;HaplotypeScore=120.8362;MLEAC=1;MLEAF=0.500;MQ=24.88;MQ0=28;MQRankSum=1.225;QD=0.52;ReadPosRankSum=5.417;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:162,55:221:99:144,0,1191 chrXIII 609270 . T C 112.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.070;DP=217;Dels=0.00;FS=118.216;HaplotypeScore=102.5022;MLEAC=1;MLEAF=0.500;MQ=24.79;MQ0=28;MQRankSum=-1.605;QD=0.52;ReadPosRankSum=7.364;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,77:217:99:142,0,1253 chrXIII 609276 . A C 57.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.520;DP=222;Dels=0.00;FS=29.634;HaplotypeScore=130.1906;MLEAC=1;MLEAF=0.500;MQ=25.14;MQ0=28;MQRankSum=3.188;QD=0.26;ReadPosRankSum=6.656;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:165,55:222:87:87,0,1376 chrXIII 609279 . T C 57.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.017;DP=222;Dels=0.00;FS=13.438;HaplotypeScore=140.8800;MLEAC=1;MLEAF=0.500;MQ=25.01;MQ0=27;MQRankSum=3.960;QD=0.26;ReadPosRankSum=5.347;SB=-1.800e+02 GT:AD:DP:GQ:PL 0/1:158,63:222:87:87,0,1393 chrXIII 609294 . G A 83.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.884;DP=195;Dels=0.00;FS=92.533;HaplotypeScore=198.4556;MLEAC=1;MLEAF=0.500;MQ=25.78;MQ0=27;MQRankSum=1.146;QD=0.43;ReadPosRankSum=5.205;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,52:195:99:113,0,1427 chrXIII 609345 . C T 2119.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.073;DP=301;Dels=0.00;FS=64.685;HaplotypeScore=160.8808;MLEAC=1;MLEAF=0.500;MQ=27.36;MQ0=8;MQRankSum=3.903;QD=7.04;ReadPosRankSum=7.442;SB=-7.920e+02 GT:AD:DP:GQ:PL 0/1:142,158:301:99:2149,0,688 chrXIII 609346 . G A 660.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.914;DP=306;Dels=0.00;FS=69.663;HaplotypeScore=168.3222;MLEAC=1;MLEAF=0.500;MQ=27.45;MQ0=7;MQRankSum=-4.780;QD=2.16;ReadPosRankSum=-6.699;SB=-5.260e+02 GT:AD:DP:GQ:PL 0/1:156,146:305:99:690,0,2083 chrXIII 609348 . T C 2882.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.822;DP=309;Dels=0.00;FS=0.461;HaplotypeScore=154.1591;MLEAC=1;MLEAF=0.500;MQ=27.84;MQ0=4;MQRankSum=2.601;QD=9.33;ReadPosRankSum=7.973;SB=-1.560e+03 GT:AD:DP:GQ:PL 0/1:98,209:308:63:2912,0,63 chrXIII 609372 . T C 1177.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.643;DP=394;Dels=0.00;FS=11.136;HaplotypeScore=34.5316;MLEAC=1;MLEAF=0.500;MQ=28.56;MQ0=4;MQRankSum=0.551;QD=2.99;ReadPosRankSum=-5.736;SB=-7.390e+02 GT:AD:DP:GQ:PL 0/1:277,117:394:99:1207,0,3348 chrXIII 609378 . A C 774.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.546;DP=392;Dels=0.00;FS=28.819;HaplotypeScore=34.2451;MLEAC=1;MLEAF=0.500;MQ=28.58;MQ0=4;MQRankSum=0.253;QD=1.97;ReadPosRankSum=-7.979;SB=-3.610e+02 GT:AD:DP:GQ:PL 0/1:287,105:392:99:804,0,3597 chrXIII 609381 . T C 704.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.750;DP=390;Dels=0.00;FS=34.348;HaplotypeScore=27.0292;MLEAC=1;MLEAF=0.500;MQ=28.52;MQ0=5;MQRankSum=0.554;QD=1.81;ReadPosRankSum=-9.317;SB=-3.140e+02 GT:AD:DP:GQ:PL 0/1:285,105:390:99:734,0,3508 chrXIII 609414 . C T 89.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.251;DP=355;Dels=0.00;FS=90.385;HaplotypeScore=80.2462;MLEAC=1;MLEAF=0.500;MQ=28.11;MQ0=30;MQRankSum=1.032;QD=0.25;ReadPosRankSum=3.609;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:289,65:355:99:119,0,3603 chrXIII 609417 . C T 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.928;DP=353;Dels=0.00;FS=132.919;HaplotypeScore=81.0783;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=30;MQRankSum=0.522;QD=0.09;ReadPosRankSum=5.163;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:293,59:353:61:61,0,3779 chrXIII 609420 . G A 508.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;DP=356;Dels=0.00;FS=11.470;HaplotypeScore=83.0598;MLEAC=1;MLEAF=0.500;MQ=28.34;MQ0=29;MQRankSum=-1.237;QD=1.43;ReadPosRankSum=-4.180;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/1:286,68:356:99:538,0,3369 chrXIII 609441 . T C 189.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.179;DP=303;Dels=0.00;FS=26.030;HaplotypeScore=66.6312;MLEAC=1;MLEAF=0.500;MQ=28.63;MQ0=27;MQRankSum=-2.542;QD=0.62;ReadPosRankSum=-0.821;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:235,65:303:99:219,0,3298 chrXIII 609443 . A G 141.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.685;DP=294;Dels=0.00;FS=18.711;HaplotypeScore=64.8945;MLEAC=1;MLEAF=0.500;MQ=28.33;MQ0=27;MQRankSum=-1.724;QD=0.48;ReadPosRankSum=-0.264;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:238,54:294:99:171,0,3370 chrXIII 609447 . T C 482.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.889;DP=267;Dels=0.00;FS=15.031;HaplotypeScore=90.6519;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=27;MQRankSum=0.043;QD=1.81;ReadPosRankSum=-3.096;SB=-3.440e+02 GT:AD:DP:GQ:PL 0/1:192,74:267:99:512,0,2343 chrXIII 609489 . T C 3204 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.873;DP=167;Dels=0.00;FS=6.104;HaplotypeScore=23.4277;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=9;MQRankSum=2.841;QD=19.19;ReadPosRankSum=0.981;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3237,351,0 chrXIII 609534 . C T 341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.780;DP=29;Dels=0.00;FS=9.556;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=27.66;MQ0=0;MQRankSum=1.299;QD=11.76;ReadPosRankSum=-2.358;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:2,24:29:48:374,48,0 chrXIII 609540 . C T 248 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;QD=14.59;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,15:17:33:281,33,0 chrXIII 609578 . A G 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=13.7356;MLEAC=1;MLEAF=0.500;MQ=21.32;MQ0=0;MQRankSum=1.733;QD=1.32;ReadPosRankSum=-1.733;SB=-8.244e-03 GT:AD:DP:GQ:PL 0/1:8,2:10:31:43,0,31 chrXIII 609579 . T C 65.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=13.7356;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=6.55;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:98,12,0 chrXIII 609583 . G A 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=18.5539;MLEAC=1;MLEAF=0.500;MQ=21.39;MQ0=0;MQRankSum=0.318;QD=1.63;ReadPosRankSum=0.741;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:9,7:16:56:56,0,72 chrXIII 609585 . C T 41.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.823;DP=20;Dels=0.00;FS=7.225;HaplotypeScore=20.5395;MLEAC=1;MLEAF=0.500;MQ=22.51;MQ0=0;MQRankSum=-1.292;QD=2.05;ReadPosRankSum=1.823;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:9,11:20:71:71,0,77 chrXIII 609588 . C T 121.79 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=15.6863;MLEAC=1;MLEAF=0.500;MQ=22.51;MQ0=0;MQRankSum=-0.318;QD=6.09;ReadPosRankSum=-0.741;SB=-2.279e+01 GT:AD:DP:GQ:PL 0/1:3,17:20:4:151,0,4 chrXIII 609591 . T C 47.31 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=19.6301;MLEAC=1;MLEAF=0.500;MQ=22.86;MQ0=0;MQRankSum=-1.606;QD=2.25;ReadPosRankSum=-0.085;SB=23.69 GT:AD:DP:GQ:PL 0/1:3,10:21:12:76,0,12 chrXIII 609594 . C T 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.889;DP=24;Dels=0.00;FS=9.938;HaplotypeScore=23.5429;MLEAC=1;MLEAF=0.500;MQ=23.22;MQ0=0;MQRankSum=1.500;QD=0.79;ReadPosRankSum=0.153;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:16,8:24:49:49,0,135 chrXIII 609600 . T G 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;DP=33;Dels=0.00;FS=2.518;HaplotypeScore=63.2067;MLEAC=1;MLEAF=0.500;MQ=23.90;MQ0=0;MQRankSum=2.229;QD=1.33;ReadPosRankSum=-2.121;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,5:33:74:74,0,157 chrXIII 609612 . G T 586.04 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;DP=78;Dels=0.00;FS=31.580;HaplotypeScore=98.7243;MLEAC=1;MLEAF=0.500;MQ=26.67;MQ0=0;MQRankSum=0.416;QD=7.51;ReadPosRankSum=-6.838;SB=-2.526e+02 GT:AD:DP:GQ:PL 0/1:23,55:78:18:616,0,18 chrXIII 609660 . T C 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.171;DP=213;Dels=0.00;FS=10.345;HaplotypeScore=81.5899;MLEAC=1;MLEAF=0.500;MQ=26.24;MQ0=18;MQRankSum=-0.218;QD=0.15;ReadPosRankSum=-4.423;SB=-1.620e+02 GT:AD:DP:GQ:PL 0/1:165,48:213:62:62,0,1977 chrXIII 609699 . T A 100.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;DP=274;Dels=0.00;FS=11.620;HaplotypeScore=96.3696;MLEAC=1;MLEAF=0.500;MQ=27.32;MQ0=19;MQRankSum=3.848;QD=0.36;ReadPosRankSum=3.404;SB=-5.700e+02 GT:AD:DP:GQ:PL 0/1:202,72:274:99:130,0,2117 chrXIII 609708 . C T 253.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.585;DP=258;Dels=0.00;FS=13.051;HaplotypeScore=52.0086;MLEAC=1;MLEAF=0.500;MQ=27.07;MQ0=19;MQRankSum=4.813;QD=0.98;ReadPosRankSum=6.062;SB=-7.230e+02 GT:AD:DP:GQ:PL 0/1:176,81:258:99:283,0,1612 chrXIII 609710 . G A 318.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.743;DP=258;Dels=0.00;FS=10.198;HaplotypeScore=46.2510;MLEAC=1;MLEAF=0.500;MQ=27.02;MQ0=19;MQRankSum=4.573;QD=1.23;ReadPosRankSum=5.435;SB=-8.390e+02 GT:AD:DP:GQ:PL 0/1:174,84:258:99:348,0,1494 chrXIII 609717 . C T 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.983;DP=258;Dels=0.00;FS=176.736;HaplotypeScore=133.0426;MLEAC=1;MLEAF=0.500;MQ=26.83;MQ0=19;MQRankSum=1.278;QD=0.19;ReadPosRankSum=-0.678;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:203,54:258:79:79,0,1457 chrXIII 609723 . G C 88.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.431;DP=257;Dels=0.00;FS=63.821;HaplotypeScore=143.5732;MLEAC=1;MLEAF=0.500;MQ=27.25;MQ0=16;MQRankSum=1.017;QD=0.34;ReadPosRankSum=1.887;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:148,43:257:99:118,0,1184 chrXIII 609726 . T C 118.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.215;DP=260;Dels=0.00;FS=146.785;HaplotypeScore=139.4092;MLEAC=1;MLEAF=0.500;MQ=27.27;MQ0=14;MQRankSum=1.808;QD=0.45;ReadPosRankSum=1.979;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:212,48:260:99:148,0,1397 chrXIII 609729 . T C 483.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.926;DP=253;Dels=0.00;FS=23.514;HaplotypeScore=96.3008;MLEAC=1;MLEAF=0.500;MQ=27.32;MQ0=11;MQRankSum=1.044;QD=1.91;ReadPosRankSum=-4.566;SB=-1.077e+03 GT:AD:DP:GQ:PL 0/1:136,117:253:99:513,0,1093 chrXIII 609738 . C T 816.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.882;DP=267;Dels=0.00;FS=23.805;HaplotypeScore=8.1170;MLEAC=1;MLEAF=0.500;MQ=27.79;MQ0=3;MQRankSum=-0.259;QD=3.06;ReadPosRankSum=6.255;SB=-8.660e+02 GT:AD:DP:GQ:PL 0/1:145,122:267:99:846,0,887 chrXIII 609741 . T C 719.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.878;DP=258;Dels=0.00;FS=22.661;HaplotypeScore=1.7834;MLEAC=1;MLEAF=0.500;MQ=27.81;MQ0=3;MQRankSum=-0.178;QD=2.79;ReadPosRankSum=6.639;SB=-8.110e+02 GT:AD:DP:GQ:PL 0/1:144,113:258:99:749,0,937 chrXIII 609747 . C A 780.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.787;DP=253;Dels=0.00;FS=19.659;HaplotypeScore=251.5825;MLEAC=1;MLEAF=0.500;MQ=27.90;MQ0=1;MQRankSum=0.290;QD=3.08;ReadPosRankSum=5.111;SB=-8.290e+02 GT:AD:DP:GQ:PL 0/1:145,108:253:99:810,0,831 chrXIII 609750 . C T 771.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=9.212;DP=250;Dels=0.00;FS=23.065;HaplotypeScore=594.2558;MLEAC=1;MLEAF=0.500;MQ=27.89;MQ0=1;MQRankSum=1.253;QD=3.08;ReadPosRankSum=3.935;SB=-7.780e+02 GT:AD:DP:GQ:PL 0/1:144,106:250:99:801,0,791 chrXIII 609759 . T C 406.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.976;DP=233;Dels=0.00;FS=217.515;HaplotypeScore=668.3077;MLEAC=1;MLEAF=0.500;MQ=27.82;MQ0=0;MQRankSum=0.838;QD=1.74;ReadPosRankSum=2.835;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:148,85:233:99:436,0,536 chrXIII 609762 . C T 187.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;DP=231;Dels=0.00;FS=146.568;HaplotypeScore=727.9730;MLEAC=1;MLEAF=0.500;MQ=27.85;MQ0=0;MQRankSum=0.436;QD=0.81;ReadPosRankSum=-2.124;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:183,48:231:99:217,0,1047 chrXIII 609765 . A G 1001 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.494;DP=210;Dels=0.00;FS=24.252;HaplotypeScore=637.1982;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;MQRankSum=0.008;QD=4.77;ReadPosRankSum=-0.519;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:55,128:210:99:1034,114,0 chrXIII 609774 . T C 729.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.581;DP=171;Dels=0.00;FS=24.985;HaplotypeScore=87.8926;MLEAC=1;MLEAF=0.500;MQ=27.83;MQ0=0;MQRankSum=2.375;QD=4.26;ReadPosRankSum=5.291;SB=-7.340e+02 GT:AD:DP:GQ:PL 0/1:56,115:171:99:759,0,412 chrXIII 609777 . T C 284.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.295;DP=173;Dels=0.00;FS=128.874;HaplotypeScore=110.2387;MLEAC=1;MLEAF=0.500;MQ=27.84;MQ0=0;MQRankSum=-0.303;QD=1.64;ReadPosRankSum=-4.676;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,32:173:99:314,0,810 chrXIII 609780 . T C 236.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.192;DP=170;Dels=0.00;FS=147.445;HaplotypeScore=112.1135;MLEAC=1;MLEAF=0.500;MQ=27.75;MQ0=0;MQRankSum=1.840;QD=1.39;ReadPosRankSum=-4.825;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,32:170:99:266,0,927 chrXIII 609783 . T C 262.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.303;DP=168;Dels=0.00;FS=147.445;HaplotypeScore=147.1381;MLEAC=1;MLEAF=0.500;MQ=27.74;MQ0=0;MQRankSum=-1.186;QD=1.56;ReadPosRankSum=-5.552;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,32:168:99:292,0,1029 chrXIII 609786 . C T 1027.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.553;DP=187;Dels=0.00;FS=47.031;HaplotypeScore=167.8166;MLEAC=1;MLEAF=0.500;MQ=27.70;MQ0=0;MQRankSum=-0.119;QD=5.49;ReadPosRankSum=4.008;SB=-8.320e+02 GT:AD:DP:GQ:PL 0/1:44,143:187:99:1057,0,212 chrXIII 609788 . A G 105.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.502;DP=188;Dels=0.00;FS=97.126;HaplotypeScore=169.1194;MLEAC=1;MLEAF=0.500;MQ=27.71;MQ0=0;MQRankSum=1.245;QD=0.56;ReadPosRankSum=1.641;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:166,22:188:99:135,0,1180 chrXIII 609793 . G A 494.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.359;DP=191;Dels=0.00;FS=26.450;HaplotypeScore=152.5887;MLEAC=1;MLEAF=0.500;MQ=27.78;MQ0=0;MQRankSum=-0.059;QD=2.59;ReadPosRankSum=-4.711;SB=-4.740e+02 GT:AD:DP:GQ:PL 0/1:123,68:191:99:524,0,845 chrXIII 609795 . T C 32.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.046;DP=193;Dels=0.00;FS=91.329;HaplotypeScore=145.6336;MLEAC=1;MLEAF=0.500;MQ=27.80;MQ0=0;MQRankSum=-0.827;QD=0.17;ReadPosRankSum=2.046;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:172,21:193:62:62,0,1300 chrXIII 609798 . T C 212.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.187;DP=185;Dels=0.00;FS=14.060;HaplotypeScore=144.4868;MLEAC=1;MLEAF=0.500;MQ=27.80;MQ0=0;MQRankSum=1.449;QD=1.15;ReadPosRankSum=-3.370;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/1:147,38:185:99:242,0,1087 chrXIII 609801 . A T 300.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;DP=179;Dels=0.00;FS=53.364;HaplotypeScore=144.7927;MLEAC=1;MLEAF=0.500;MQ=28.25;MQ0=0;MQRankSum=1.610;QD=1.68;ReadPosRankSum=-4.063;SB=-1.370e+02 GT:AD:DP:GQ:PL 0/1:105,42:179:99:330,0,624 chrXIII 609804 . C T 76.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.471;DP=171;Dels=0.00;FS=29.545;HaplotypeScore=138.4660;MLEAC=1;MLEAF=0.500;MQ=28.83;MQ0=0;MQRankSum=1.625;QD=0.44;ReadPosRankSum=-1.528;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,24:171:99:106,0,1061 chrXIII 609807 . C T 69.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.299;DP=165;Dels=0.00;FS=98.201;HaplotypeScore=126.6338;MLEAC=1;MLEAF=0.500;MQ=30.30;MQ0=0;MQRankSum=-1.211;QD=0.42;ReadPosRankSum=-1.046;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:145,20:165:99:99,0,1187 chrXIII 609930 . T C 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=4.370;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;MQRankSum=-0.689;QD=21.06;ReadPosRankSum=1.713;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3939,426,0 chrXIII 609992 . G A 2839 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=22.71;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2872,315,0 chrXIII 610070 . G A 3750.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.31;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3750,402,0 chrXIII 610156 . G T 4400.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.9973;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=25.00;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4400,471,0 chrXIII 610186 . G C 4185.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.51;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4185,459,0 chrXIII 610236 . C T 3694.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.4734;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.60;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3694,396,0 chrXIII 610330 . A G 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.333;DP=179;Dels=0.00;FS=5.216;HaplotypeScore=13.4141;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.713;QD=18.02;ReadPosRankSum=3.362;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:4,175:179:99:3258,354,0 chrXIII 610388 . A G 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.516;QD=20.76;ReadPosRankSum=1.710;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3363,369,0 chrXIII 610423 . G A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.88;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3675,393,0 chrXIII 610501 . C G 4350.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.54;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,187:193:99:4350,483,0 chrXIII 610742 . G A 5354.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=10.0881;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:0,236:239:99:5354,562,0 chrXIII 611396 . A T 4180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=173;Dels=0.00;FS=11.967;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.015;QD=24.16;ReadPosRankSum=2.407;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4180,447,0 chrXIII 611531 . G A 3961.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.5182;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.51;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3961,432,0 chrXIII 611567 . T A 4414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=192;Dels=0.00;FS=10.301;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.134;QD=22.99;ReadPosRankSum=2.360;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4414,471,0 chrXIII 611831 . G A 3051 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.5649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3084,324,0 chrXIII 611899 . C G 2218 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.0003;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2251,243,0 chrXIII 612029 . G A 3119 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.0828;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.18;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3152,330,0 chrXIII 612081 . T C 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.830;QD=22.96;ReadPosRankSum=1.588;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2260,249,0 chrXIII 612129 . C T 2061 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.83;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2094,222,0 chrXIII 612269 . T C 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=125;Dels=0.00;FS=3.027;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.268;QD=24.10;ReadPosRankSum=2.410;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:3045,333,0 chrXIII 612492 . C T 2368 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.34;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2401,255,0 chrXIII 612545 . A G 2850 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.95;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2883,318,0 chrXIII 612690 . T C 1851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=3.062;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.121;QD=21.78;ReadPosRankSum=1.691;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1884,207,0 chrXIII 612857 . C A 2901 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.45;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2934,312,0 chrXIII 613009 . G A 3673.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.49;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3673,393,0 chrXIII 613158 . T C 2411 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.26;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2444,273,0 chrXIII 613174 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8603;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=21.47;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2567,273,0 chrXIII 613284 . G A 3841.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.0515;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.42;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3841,417,0 chrXIII 613383 . A G 2564 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.73;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2597,285,0 chrXIII 613424 . G A 2763 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.93;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2796,294,0 chrXIII 613425 . T A 2758 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=21.38;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2791,294,0 chrXIII 613437 . T A 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=130;Dels=0.00;FS=7.001;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.339;QD=19.62;ReadPosRankSum=2.333;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2583,273,0 chrXIII 613737 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8461;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.89;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3559,390,0 chrXIII 613794 . A C 3486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=145;Dels=0.00;FS=3.700;HaplotypeScore=10.5316;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.369;QD=24.04;ReadPosRankSum=1.708;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3486,378,0 chrXIII 613875 . C G 2672 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.4987;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.55;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,120:124:99:2705,306,0 chrXIII 613950 . G A 3993.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=8.4590;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.96;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3993,429,0 chrXIII 614390 . A G 3533.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.0241;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.79;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3533,390,0 chrXIII 614450 . A G 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=3.791;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.337;QD=23.52;ReadPosRankSum=1.688;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3716,408,0 chrXIII 614840 . A G 2319 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=18.85;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2352,264,0 chrXIII 614847 . C T 2404 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.20;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2437,258,0 chrXIII 615436 . T A 4572.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.9360;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.57;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4572,519,0 chrXIII 615516 . G T 4487.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.12;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4487,480,0 chrXIII 615554 . T G 3859.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.82;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3859,429,0 chrXIII 615606 . A T 4847.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.9888;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.73;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4847,505,0 chrXIII 615663 . G A 4803.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.44;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4803,508,0 chrXIII 615693 . T C 4840.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.16;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4840,522,0 chrXIII 615950 . T C 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.00;FS=7.707;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.872;QD=22.37;ReadPosRankSum=2.328;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3646,402,0 chrXIII 615989 . C T 3594.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.8767;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.77;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3594,378,0 chrXIII 616006 . C T 3690.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.36;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3690,393,0 chrXIII 616086 . A C 4008.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.86;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4008,441,0 chrXIII 616262 . A G 4063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.059;QD=22.95;ReadPosRankSum=1.693;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:4063,450,0 chrXIII 616481 . A G 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.680;QD=22.63;ReadPosRankSum=1.706;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3065,339,0 chrXIII 616637 . A G 3905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.319;QD=23.81;ReadPosRankSum=2.419;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3905,410,0 chrXIII 617306 . A T 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=174;Dels=0.00;FS=7.460;HaplotypeScore=7.3836;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.431;QD=23.72;ReadPosRankSum=2.224;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:4128,453,0 chrXIII 617657 . A G 4308.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.1094;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.01;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4308,474,0 chrXIII 617952 . T C 4006.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.58;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:4006,441,0 chrXIII 618075 . G A 3273.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.55;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3273,351,0 chrXIII 618249 . T G 2388 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.2019;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.41;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2421,267,0 chrXIII 618255 . A G 2222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-0.456;QD=19.49;ReadPosRankSum=1.671;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2255,252,0 chrXIII 619253 . G A 3558.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3558,378,0 chrXIII 619339 . T A 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=125;Dels=0.02;FS=0.000;HaplotypeScore=9.8198;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=1.563;QD=21.08;ReadPosRankSum=1.704;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2668,266,0 chrXIII 619538 . C G 3853.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.70;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3853,423,0 chrXIII 619660 . A G 3447.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3447,375,0 chrXIII 620006 . C T 4847.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.7278;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.36;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4847,519,0 chrXIII 620533 . A G 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=118;Dels=0.00;FS=7.091;HaplotypeScore=7.0092;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.146;QD=22.48;ReadPosRankSum=2.408;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2686,297,0 chrXIII 621112 . A G 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.800;QD=24.32;ReadPosRankSum=1.660;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3527,381,0 chrXIII 621489 . C G 4105.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.73;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4105,453,0 chrXIII 622063 . A G 2137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;MQRankSum=-0.850;QD=19.43;ReadPosRankSum=1.701;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2170,237,0 chrXIII 622076 . T G 2049 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=19.15;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2082,225,0 chrXIII 622092 . A T 1919 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=18.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1952,207,0 chrXIII 622122 . A C 1341 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=17.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1374,150,0 chrXIII 622209 . A G 1055 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:43:99:1088,120,0 chrXIII 622608 . G A 3188 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.27;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3221,351,0 chrXIII 622664 . T G 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=22.59;ReadPosRankSum=1.706;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3128,351,0 chrXIII 622747 . T G 4037.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=182;Dels=0.00;FS=5.316;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.873;QD=22.18;ReadPosRankSum=2.928;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:4037,462,0 chrXIII 623049 . G A 4365.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.1311;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.12;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4365,477,0 chrXIII 623124 . T C 2583 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=19.87;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2616,291,0 chrXIII 623127 . C T 2556 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=19.81;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2589,282,0 chrXIII 623505 . C T 2056 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=19.77;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2089,222,0 chrXIII 623510 . T C 1921 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=19.40;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1954,216,0 chrXIII 623598 . T A 2873 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.62;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2906,306,0 chrXIII 623608 . C T 2679 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.30;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2712,288,0 chrXIII 623868 . G A 3753.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=15.8402;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.88;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3753,405,0 chrXIII 624099 . T G 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.768;DP=144;Dels=0.00;FS=2.253;HaplotypeScore=12.7281;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.021;QD=20.28;ReadPosRankSum=2.923;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:2954,327,0 chrXIII 624266 . T A 4270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.465;QD=24.40;ReadPosRankSum=1.712;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4270,451,0 chrXIII 624297 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.782;QD=21.85;ReadPosRankSum=1.712;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3824,411,0 chrXIII 624694 . T C 9146.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.194;DP=392;Dels=0.00;FS=31.651;HaplotypeScore=16.9989;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.472;QD=23.33;ReadPosRankSum=5.347;SB=-4.826e+03 GT:AD:DP:GQ:PL 1/1:10,381:392:99:9146,1006,0 chrXIII 624780 . C T 7610.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=25.2063;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-4.259e+03 GT:AD:DP:GQ:PL 1/1:0,324:331:99:7610,811,0 chrXIII 624949 . A G 5160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=261;Dels=0.00;FS=2.496;HaplotypeScore=13.4253;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.000;QD=19.77;ReadPosRankSum=2.919;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:3,257:261:99:5160,573,0 chrXIII 625068 . T C 4911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=18.0566;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.294;QD=21.45;ReadPosRankSum=1.701;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:1,224:229:99:4911,534,0 chrXIII 625245 . A G 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.837;QD=22.46;ReadPosRankSum=1.599;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4133,456,0 chrXIII 625824 . G C 746 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.94;MQ0=0;QD=8.57;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:84:779,84,0 chrXIII 625828 . G A 689 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=0;QD=7.03;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:78:722,78,0 chrXIII 625846 . A T 491 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=4.55;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:57:524,57,0 chrXIII 625850 . T C 497 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=4.60;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:57:530,57,0 chrXIII 625851 . T C 480 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=0;MQRankSum=-1.732;QD=4.40;ReadPosRankSum=1.700;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:57:513,57,0 chrXIII 625858 . C T 690 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.04;MQ0=0;QD=4.79;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:78:723,78,0 chrXIII 625864 . T A 902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.715;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.1255;MLEAC=2;MLEAF=1.00;MQ=37.22;MQ0=0;MQRankSum=-2.305;QD=5.82;ReadPosRankSum=2.954;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:3,152:155:99:935,105,0 chrXIII 625931 . C T 2925 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=17.01;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2958,315,0 chrXIII 625941 . C T 3054 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=19.09;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3087,327,0 chrXIII 626065 . A G 5321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;MQRankSum=1.192;QD=22.94;ReadPosRankSum=1.657;SB=-2.904e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:5321,582,0 chrXIII 626249 . T G 4141.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=3.590;HaplotypeScore=8.2821;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.374;QD=23.26;ReadPosRankSum=1.712;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4141,447,0 chrXIII 626295 . A G 2881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.122;QD=21.99;ReadPosRankSum=2.375;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2914,318,0 chrXIII 626327 . T C 2444 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.25;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2477,279,0 chrXIII 626342 . T G 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=4.812;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.948;QD=20.95;ReadPosRankSum=1.667;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2275,252,0 chrXIII 626430 . A G 2083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=106;Dels=0.00;FS=2.495;HaplotypeScore=10.6209;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.279;QD=19.65;ReadPosRankSum=2.933;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:3,102:106:99:2116,231,0 chrXIII 626581 . A T 1198 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.02;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1231,129,0 chrXIII 627086 . G A 7008.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.42;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:7008,742,0 chrXIII 627239 . G T 5618.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:5618,598,0 chrXIII 627290 . G A 4906.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.36;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:4906,514,0 chrXIII 627939 . C T 4143.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=19.2376;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.61;SB=-2.548e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4143,430,0 chrXIII 628401 . G T 2720 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.30;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2753,294,0 chrXIII 628415 . G A 2704 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=18.52;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2737,288,0 chrXIII 628650 . A G 1446 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.58;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1479,165,0 chrXIII 628863 . A T 961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=52;Dels=0.00;FS=11.139;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=0.400;QD=18.48;ReadPosRankSum=1.666;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:1,51:52:99:994,108,0 chrXIII 628892 . C T 1432 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=21.70;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1465,153,0 chrXIII 628982 . T A 2190 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.33;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2223,249,0 chrXIII 629060 . C T 3036 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=24.68;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3069,330,0 chrXIII 629118 . G C 4206.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.50;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,175:179:99:4206,465,0 chrXIII 629153 . C T 4819.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.8800;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.10;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4819,516,0 chrXIII 629252 . A T 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=152;Dels=0.00;FS=3.128;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.393;QD=21.54;ReadPosRankSum=1.640;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3274,348,0 chrXIII 629269 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.274;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-1.234;QD=21.51;ReadPosRankSum=1.664;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3291,360,0 chrXIII 629513 . A G 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.8482;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.540;QD=23.28;ReadPosRankSum=1.660;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3376,369,0 chrXIII 629793 . C T 4488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.420;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.127;QD=23.62;ReadPosRankSum=-0.192;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4488,454,0 chrXIII 630222 . A G 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=109;Dels=0.00;FS=5.826;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-1.454;QD=22.94;ReadPosRankSum=2.936;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2533,282,0 chrXIII 630246 . T A 1993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.487;DP=99;Dels=0.00;FS=3.329;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.017;QD=20.13;ReadPosRankSum=1.662;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2026,213,0 chrXIII 630249 . G A 1970 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=20.31;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2003,219,0 chrXIII 630348 . C G 1912 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.24;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1945,213,0 chrXIII 630357 . G A 2060 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=22.39;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2093,222,0 chrXIII 630568 . G A 2517 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=24.44;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2550,267,0 chrXIII 630626 . A G 3207 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.86;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3240,357,0 chrXIII 630677 . A G 3541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=145;Dels=0.00;FS=10.889;HaplotypeScore=10.5186;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.252;QD=24.42;ReadPosRankSum=2.951;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:3,141:145:99:3541,390,0 chrXIII 630740 . T G 3601.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.9236;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.33;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3601,393,0 chrXIII 630957 . G A 2981 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.92;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3014,318,0 chrXIII 630977 . A G 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.617;QD=20.19;ReadPosRankSum=1.644;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2436,270,0 chrXIII 631497 . C T 4895.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.6659;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=26.60;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4895,511,0 chrXIII 631574 . T A 4862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=198;Dels=0.00;FS=2.861;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.946;QD=24.56;ReadPosRankSum=2.298;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:4862,531,0 chrXIII 631615 . A G 4515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=187;Dels=0.00;FS=3.032;HaplotypeScore=10.8284;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.429;QD=24.14;ReadPosRankSum=2.397;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:4515,504,0 chrXIII 631646 . C T 4865.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.28;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4865,531,0 chrXIII 631956 . C T 3790.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.0102;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.16;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3790,396,0 chrXIII 632028 . T C 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=124;Dels=0.00;FS=3.340;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=0.662;QD=17.28;ReadPosRankSum=1.704;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2176,240,0 chrXIII 632030 . A C 2116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=123;Dels=0.00;FS=3.022;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-0.150;QD=17.20;ReadPosRankSum=2.330;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2149,237,0 chrXIII 632074 . A G 1693 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=14.47;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1726,192,0 chrXIII 633461 . T C 4149.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.0969;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=7;MQRankSum=1.714;QD=21.17;ReadPosRankSum=-0.284;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:8,188:196:99:4149,459,0 chrXIII 633866 . C T 4518.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.9888;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.65;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4518,483,0 chrXIII 633893 . G A 4255.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.3850;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=3;QD=22.63;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4255,451,0 chrXIII 634582 . G A 2350 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.00;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2383,267,0 chrXIII 634650 . C T 2033 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=24.79;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2066,213,0 chrXIII 634668 . G A 1704 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=21.30;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1737,192,0 chrXIII 634674 . T C 1685 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.33;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1718,189,0 chrXIII 634895 . T C 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.8169;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.556;QD=21.99;ReadPosRankSum=1.699;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2364,255,0 chrXIII 635124 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.10;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3338,366,0 chrXIII 635175 . A T 4877.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.8179;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.76;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4877,534,0 chrXIII 635337 . T G 4678.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.7978;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.93;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4678,516,0 chrXIII 635402 . A G 5393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.808;QD=23.97;ReadPosRankSum=1.686;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5393,600,0 chrXIII 635501 . G A 4224.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.23;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4224,450,0 chrXIII 635513 . A G 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=0.856;QD=21.30;ReadPosRankSum=1.713;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3812,405,0 chrXIII 635544 . G A 3105 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.29;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3138,339,0 chrXIII 636081 . G C 2565 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.11;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2598,285,0 chrXIII 636091 . C A 2457 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8844;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.94;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2490,276,0 chrXIII 636173 . T C 2763 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8439;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.02;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2796,306,0 chrXIII 636208 . C T 3027 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3060,333,0 chrXIII 636252 . T G 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=113;Dels=0.00;FS=3.014;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.099;QD=22.59;ReadPosRankSum=2.186;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2586,282,0 chrXIII 637013 . A T 1627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.923;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-0.376;QD=14.93;ReadPosRankSum=1.470;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:1660,158,0 chrXIII 637026 . T C 1789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.629;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-1.698;QD=17.71;ReadPosRankSum=1.664;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1822,176,0 chrXIII 637066 . T C 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.274;DP=125;Dels=0.00;FS=9.184;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.945;QD=19.71;ReadPosRankSum=3.387;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:4,120:125:99:2497,279,0 chrXIII 637193 . C A 3722.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.01;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3722,411,0 chrXIII 637295 . C T 3713.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.95;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3713,390,0 chrXIII 637313 . A G 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=167;Dels=0.00;FS=10.179;HaplotypeScore=6.8429;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.524;QD=21.75;ReadPosRankSum=2.922;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3632,396,0 chrXIII 637373 . C T 4349.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.0155;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.03;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4349,457,0 chrXIII 637515 . G A 5491.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.40;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,221:225:99:5491,577,0 chrXIII 637703 . T C 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=187;Dels=0.00;FS=10.800;HaplotypeScore=11.3751;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.165;QD=22.45;ReadPosRankSum=2.410;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:2,184:187:99:4199,462,0 chrXIII 638207 . C T 2929 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.1258;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.53;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2962,315,0 chrXIII 638968 . C T 2566 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2599,279,0 chrXIII 639659 . C T 4053.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.2064;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.94;SB=-2.480e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4053,438,0 chrXIII 640095 . G A 4335.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.82;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4335,462,0 chrXIII 640415 . G A 4998.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.8700;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.14;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4998,549,0 chrXIII 640589 . G A 4699.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.1099;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.50;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4699,504,0 chrXIII 640619 . T C 4088.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.6926;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.46;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4088,465,0 chrXIII 640720 . G C 2427 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.3341;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.86;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2460,270,0 chrXIII 640737 . G A 2591 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.3191;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.41;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2624,285,0 chrXIII 641090 . A G 2387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7233;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.986;QD=18.36;ReadPosRankSum=1.679;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2420,267,0 chrXIII 641091 . A G 2405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.776;DP=129;Dels=0.00;FS=11.376;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.271;QD=18.64;ReadPosRankSum=3.726;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:5,123:129:99:2438,264,0 chrXIII 641329 . T C 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.728;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.7413;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=1.785;QD=21.39;ReadPosRankSum=2.182;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2642,294,0 chrXIII 641548 . A G 3507.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3507,393,0 chrXIII 641634 . C A 4532.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=15.9514;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.89;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4532,478,0 chrXIII 642355 . A G 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=204;Dels=0.00;FS=6.620;HaplotypeScore=12.1435;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.405;QD=21.37;ReadPosRankSum=2.401;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4359,495,0 chrXIII 642868 . G A 3673.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3673,399,0 chrXIII 643060 . G C 4041.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4041,456,0 chrXIII 643204 . C T 4629.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.1594;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.98;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4629,493,0 chrXIII 643657 . G A 4830.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.77;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4830,502,0 chrXIII 643748 . T C 4634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.0807;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.452;QD=22.72;ReadPosRankSum=1.698;SB=-2.449e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4634,513,0 chrXIII 643996 . G A 4019.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.33;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4019,435,0 chrXIII 644092 . A G 5073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=222;Dels=0.00;FS=10.202;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.425;QD=22.85;ReadPosRankSum=2.950;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:3,219:222:99:5073,570,0 chrXIII 644818 . A G 7497.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=14.5810;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.18;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,308:310:99:7497,823,0 chrXIII 644973 . T G 7340.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=15.5137;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.23;SB=-3.921e+03 GT:AD:DP:GQ:PL 1/1:0,315:316:99:7340,799,0 chrXIII 645040 . C A 7692.01 PASS AC=2;AF=1.00;AN=2;DP=356;Dels=0.00;FS=0.000;HaplotypeScore=22.4867;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.61;SB=-3.671e+03 GT:AD:DP:GQ:PL 1/1:0,356:356:99:7692,847,0 chrXIII 645093 . A T 6087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=12.9470;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.644;QD=20.49;ReadPosRankSum=1.637;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:1,296:297:99:6087,646,0 chrXIII 645101 . T C 5577.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.35;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,271:274:99:5577,606,0 chrXIII 645302 . C T 3286.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.05;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3286,360,0 chrXIII 645420 . A T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.2500;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3324,354,0 chrXIII 645754 . G A 2879 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=18.69;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2912,318,0 chrXIII 645762 . G A 2493 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=17.56;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2526,267,0 chrXIII 645786 . G A 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=0.837;QD=18.59;ReadPosRankSum=-0.153;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2766,291,0 chrXIII 645859 . G T 3922.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=23.07;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3922,420,0 chrXIII 645893 . T G 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=4.910;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;MQRankSum=-0.532;QD=20.17;ReadPosRankSum=1.705;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:1,126:130:99:2655,291,0 chrXIII 645914 . C G 2150 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=40.34;MQ0=0;QD=16.93;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2183,243,0 chrXIII 645925 . T C 2014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.761;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=38.19;MQ0=0;MQRankSum=-1.155;QD=15.98;ReadPosRankSum=1.650;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2047,228,0 chrXIII 645935 . T A 2004 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.66;MQ0=0;QD=16.84;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2037,219,0 chrXIII 645941 . C T 1851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.123;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.79;MQ0=0;MQRankSum=-1.315;QD=17.14;ReadPosRankSum=-1.059;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1884,198,0 chrXIII 646115 . A G 2884 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=24.24;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2917,318,0 chrXIII 646181 . G A 3918.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=25.12;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3918,409,0 chrXIII 646241 . A G 3463.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.56;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3463,384,0 chrXIII 646309 . G T 3320.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.71;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3320,354,0 chrXIII 646336 . T C 3425.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.95;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3425,381,0 chrXIII 646699 . G T 3204.99 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=23.57;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3238,345,0 chrXIII 647164 . G T 3798.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.4009;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.30;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3798,420,0 chrXIII 647213 . C T 4647.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.12;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4647,507,0 chrXIII 647329 . G C 3504.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.36;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3504,381,0 chrXIII 647375 . G A 3166 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=25.13;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3199,339,0 chrXIII 647397 . C G 2347 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=19.40;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2380,267,0 chrXIII 647406 . A G 2078 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=17.61;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2111,234,0 chrXIII 647456 . C G 2464 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=17.60;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2497,279,0 chrXIII 647504 . G T 3951.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.8910;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.58;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3951,435,0 chrXIII 647615 . G A 3291.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.8254;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.24;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3291,348,0 chrXIII 647636 . A G 2456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.150;QD=19.19;ReadPosRankSum=0.532;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2489,273,0 chrXIII 647993 . C T 3141 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.27;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3174,333,0 chrXIII 648168 . T A 3979.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3979,418,0 chrXIII 648335 . A G 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=142;Dels=0.00;FS=2.934;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.677;QD=23.31;ReadPosRankSum=2.415;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:2,138:142:99:3310,363,0 chrXIII 648575 . C T 3088 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.70;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3121,339,0 chrXIII 648617 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.54;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3559,390,0 chrXIII 648680 . T C 2690 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3930;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.02;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2723,309,0 chrXIII 648689 . C T 2902 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=23.40;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2935,315,0 chrXIII 648809 . A G 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=121;Dels=0.00;FS=2.800;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.640;QD=22.87;ReadPosRankSum=2.368;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2800,309,0 chrXIII 649250 . C T 2276 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=25.57;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2309,243,0 chrXIII 649383 . T C 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.840;QD=24.27;ReadPosRankSum=1.698;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2484,276,0 chrXIII 649409 . G A 2594 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.47;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2627,288,0 chrXIII 649450 . T C 2243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.925;QD=21.78;ReadPosRankSum=1.698;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2276,252,0 chrXIII 649473 . G A 2210 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=20.65;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2243,243,0 chrXIII 649497 . A G 2199 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.63;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2232,246,0 chrXIII 649520 . A C 2770 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=19.93;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2803,309,0 chrXIII 649796 . G A 2766 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.2228;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.67;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2799,300,0 chrXIII 649834 . G A 3175 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.20;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3208,348,0 chrXIII 649905 . T C 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=117;Dels=0.00;FS=6.533;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.594;QD=21.45;ReadPosRankSum=2.407;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:2,112:117:99:2543,273,0 chrXIII 650015 . A G 2641 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2674,294,0 chrXIII 650191 . A G 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=115;Dels=0.00;FS=2.427;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.646;QD=21.52;ReadPosRankSum=2.443;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:3,111:115:99:2508,273,0 chrXIII 650649 . G C 2715 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2748,303,0 chrXIII 650714 . T C 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.241;QD=23.69;ReadPosRankSum=1.650;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3042,336,0 chrXIII 651148 . A G 3122 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.79;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3155,345,0 chrXIII 651277 . A G 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=148;Dels=0.00;FS=2.824;HaplotypeScore=8.7093;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.159;QD=23.95;ReadPosRankSum=2.416;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3544,384,0 chrXIII 652003 . A G 1596 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=13.9545;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.46;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1629,186,0 chrXIII 652037 . C T 2029 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.74;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2062,225,0 chrXIII 652186 . A G 2272 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.85;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2305,252,0 chrXIII 652187 . G A 2333 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.22;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2366,255,0 chrXIII 652246 . T G 2747 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.8680;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.80;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2780,306,0 chrXIII 652277 . T C 2808 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.29;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2841,312,0 chrXIII 652690 . A C 4060.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=24.17;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4060,444,0 chrXIII 652744 . A G 4274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-0.837;QD=23.88;ReadPosRankSum=1.674;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4274,474,0 chrXIII 652951 . A T 891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.629;DP=136;Dels=0.00;FS=15.500;HaplotypeScore=88.2811;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;MQRankSum=3.594;QD=6.55;ReadPosRankSum=-8.394;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:84,52:136:99:924,102,0 chrXIII 652964 . T A 267.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;DP=168;Dels=0.00;FS=4.457;HaplotypeScore=4.8552;MLEAC=1;MLEAF=0.500;MQ=34.91;MQ0=0;MQRankSum=-0.875;QD=1.59;ReadPosRankSum=-7.676;SB=-1.070e+02 GT:AD:DP:GQ:PL 0/1:140,28:168:99:297,0,1180 chrXIII 653063 . C A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.02;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3683,393,0 chrXIII 653300 . A G 3852.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=13.1860;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.28;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3852,441,0 chrXIII 653486 . G T 3683.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=15.9616;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.60;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3683,402,0 chrXIII 653519 . C A 3602.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.37;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3602,379,0 chrXIII 653617 . C T 2685 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.75;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2718,297,0 chrXIII 653771 . C A 2185 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=20.23;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2218,243,0 chrXIII 653774 . G T 2156 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.5329;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=20.34;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2189,228,0 chrXIII 653809 . T C 2111 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=20.10;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2144,237,0 chrXIII 653832 . G A 2290 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=19.57;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2323,252,0 chrXIII 654220 . A G 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.704;DP=189;Dels=0.00;FS=12.281;HaplotypeScore=20.7109;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.165;QD=18.86;ReadPosRankSum=3.763;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:5,180:189:99:3564,396,0 chrXIII 654423 . C T 4873.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=19.9213;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.32;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4873,528,0 chrXIII 654703 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-0.811;QD=21.07;ReadPosRankSum=1.710;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3329,372,0 chrXIII 654723 . C T 3062 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.41;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3095,327,0 chrXIII 654826 . C A 3297.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.42;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3297,345,0 chrXIII 654902 . T C 2633 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.23;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2666,291,0 chrXIII 654983 . T C 2332 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=18.96;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2365,261,0 chrXIII 655345 . G A 4007.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.14;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4007,435,0 chrXIII 655501 . G A 3305.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.78;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3305,348,0 chrXIII 655522 . G A 3768.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.55;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3768,411,0 chrXIII 655552 . G A 4666.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.33;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4666,493,0 chrXIII 655608 . G A 4392.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.27;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4392,460,0 chrXIII 655922 . A G 4022.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.98;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4022,441,0 chrXIII 656131 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.97;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3264,354,0 chrXIII 656137 . T C 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=151;Dels=0.00;FS=9.930;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-0.060;QD=20.86;ReadPosRankSum=2.874;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3183,357,0 chrXIII 656237 . G A 4294.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.82;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4294,462,0 chrXIII 657064 . G A 3401.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.62;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3401,366,0 chrXIII 657086 . A G 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=3.647;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-1.233;QD=22.75;ReadPosRankSum=1.706;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3036,336,0 chrXIII 657240 . G C 2606 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=19.02;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2639,294,0 chrXIII 657241 . C A 2703 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=19.73;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2736,297,0 chrXIII 657406 . G A 3700.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=26.06;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3700,390,0 chrXIII 657916 . T C 6069.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.25;SB=-3.094e+03 GT:AD:DP:GQ:PL 1/1:0,259:261:99:6069,669,0 chrXIII 658093 . G T 6394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=256;Dels=0.00;FS=3.578;HaplotypeScore=8.1969;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.253;QD=24.98;ReadPosRankSum=1.705;SB=-3.081e+03 GT:AD:DP:GQ:PL 1/1:1,252:256:99:6394,679,0 chrXIII 658298 . G A 4151.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.9796;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.06;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4151,447,0 chrXIII 658377 . G A 2674 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.06;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2707,291,0 chrXIII 658644 . T C 3553.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.02;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3553,393,0 chrXIII 658659 . T A 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.021;QD=20.64;ReadPosRankSum=1.711;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3508,384,0 chrXIII 659437 . C T 4115.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.2433;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=23.65;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4115,438,0 chrXIII 659450 . T C 3748.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=22.58;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3748,414,0 chrXIII 659686 . C T 3090 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.02;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.43;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3123,333,0 chrXIII 659687 . A G 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=157;Dels=0.02;FS=9.164;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.731;QD=19.05;ReadPosRankSum=3.367;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:4,148:154:99:3024,333,0 chrXIII 659727 . A G 2867 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=19.37;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2900,327,0 chrXIII 659982 . A G 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.4583;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.232;QD=22.85;ReadPosRankSum=1.655;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:4159,459,0 chrXIII 660011 . T A 3921.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.66;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3921,417,0 chrXIII 661121 . A T 4088.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.63;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4088,447,0 chrXIII 661181 . A G 4327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=191;Dels=0.00;FS=7.026;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.104;QD=22.65;ReadPosRankSum=2.397;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:2,186:191:99:4327,489,0 chrXIII 661228 . G A 5098.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.51;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5098,544,0 chrXIII 661308 . G A 3911.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.5646;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.70;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3911,414,0 chrXIII 661378 . A G 4867.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.09;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4867,528,0 chrXIII 661550 . T C 5799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=235;Dels=0.00;FS=5.405;HaplotypeScore=8.0428;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.509;QD=24.68;ReadPosRankSum=2.945;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:3,232:235:99:5799,645,0 chrXIII 661638 . A C 5734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=13.6573;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.534;QD=23.79;ReadPosRankSum=1.703;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:1,239:241:99:5734,627,0 chrXIII 661676 . T C 5553.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=9.6319;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.94;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:5553,621,0 chrXIII 661718 . A G 5024.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.0535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5024,564,0 chrXIII 661764 . G A 5549.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=19.0338;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.02;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5549,592,0 chrXIII 662466 . T C 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.7855;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.009;QD=21.37;ReadPosRankSum=1.702;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2491,273,0 chrXIII 662603 . C T 3319.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3319,360,0 chrXIII 662886 . A G 3808.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3808,423,0 chrXIII 662961 . G A 5060.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:5060,535,0 chrXIII 663000 . C T 4951.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.8938;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=25.39;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4951,537,0 chrXIII 663189 . A G 3996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.379;DP=195;Dels=0.00;FS=5.237;HaplotypeScore=17.7652;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.524;QD=20.49;ReadPosRankSum=3.379;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:4,191:195:99:3996,441,0 chrXIII 663394 . A T 3587.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.70;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3587,381,0 chrXIII 663441 . T C 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=4.771;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.276;QD=22.40;ReadPosRankSum=1.657;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3146,357,0 chrXIII 663474 . G A 2887 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.04;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2920,321,0 chrXIII 663903 . T C 5305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=227;Dels=0.00;FS=2.533;HaplotypeScore=19.9728;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.677;QD=23.37;ReadPosRankSum=2.934;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:3,224:227:99:5305,588,0 chrXIII 664122 . A C 4934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.348;DP=222;Dels=0.00;FS=2.830;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.127;QD=22.23;ReadPosRankSum=1.310;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:4934,558,0 chrXIII 664466 . T C 3096 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.4884;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3129,342,0 chrXIII 664741 . A G 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.325;QD=23.87;ReadPosRankSum=1.596;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2468,279,0 chrXIII 664811 . A G 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=150;Dels=0.00;FS=7.886;HaplotypeScore=11.4707;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.722;QD=23.45;ReadPosRankSum=2.350;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:2,146:150:99:3517,384,0 chrXIII 665349 . C T 4195.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.4974;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.31;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4195,444,0 chrXIII 665483 . T C 3868.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.12;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3868,423,0 chrXIII 665537 . T A 3486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=4.543;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=0.047;QD=23.55;ReadPosRankSum=1.615;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3486,372,0 chrXIII 665567 . C T 3192 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8198;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.00;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3225,339,0 chrXIII 665727 . C A 2503 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2536,267,0 chrXIII 665763 . C A 3011 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.41;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3044,315,0 chrXIII 666112 . T C 3495.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.10;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3495,381,0 chrXIII 666528 . T C 5617.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5617,618,0 chrXIII 666648 . T C 4880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.745;DP=220;Dels=0.00;FS=7.968;HaplotypeScore=4.8287;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-1.003;QD=22.18;ReadPosRankSum=3.688;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:5,214:220:99:4880,534,0 chrXIII 666667 . C T 4745.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.87;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4745,505,0 chrXIII 667024 . G A 3192 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.57;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3225,354,0 chrXIII 667173 . G C 3344.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2905;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.44;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3344,372,0 chrXIII 667277 . C T 3689.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.3190;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=21.45;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3689,396,0 chrXIII 667295 . T C 4203.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.777;QD=22.60;ReadPosRankSum=1.601;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4203,453,0 chrXIII 667318 . C G 3970.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.15;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:3970,450,0 chrXIII 667456 . A C 4657.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.6128;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.28;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4657,513,0 chrXIII 667476 . A G 4508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=216;Dels=0.00;FS=6.206;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=-0.614;QD=20.87;ReadPosRankSum=2.392;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:2,212:216:99:4508,510,0 chrXIII 667766 . G A 9025.01 filter AC=2;AF=1.00;AN=2;DP=372;Dels=0.00;FS=0.000;HaplotypeScore=27.0931;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.26;SB=-4.019e+03 GT:AD:DP:GQ:PL 1/1:0,371:372:99:9025,952,0 chrXIII 668276 . C T 102.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.480;DP=10;Dels=0.00;FS=2.730;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=0.480;QD=10.23;ReadPosRankSum=-1.733;SB=-4.505e+01 GT:AD:DP:GQ:PL 1/1:2,8:10:15:135,15,0 chrXIII 668282 . T C 49.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.633;DP=10;Dels=0.00;FS=2.808;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-1.133;QD=5.00;ReadPosRankSum=-0.365;SB=-4.193e+01 GT:AD:DP:GQ:PL 1/1:4,6:10:9:82,9,0 chrXIII 668408 . A G 1651 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.28;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1684,192,0 chrXIII 668468 . G A 1582 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=25.52;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1615,168,0 chrXIII 668628 . A G 3086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=136;Dels=0.00;FS=4.011;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.146;QD=22.69;ReadPosRankSum=1.707;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3119,339,0 chrXIII 669103 . T C 4653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=206;Dels=0.00;FS=3.005;HaplotypeScore=23.5945;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.091;QD=22.59;ReadPosRankSum=2.425;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:2,200:206:99:4653,522,0 chrXIII 669285 . A C 4751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=3.276;HaplotypeScore=6.6413;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-0.978;QD=23.18;ReadPosRankSum=1.663;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:1,201:205:99:4751,525,0 chrXIII 669310 . T C 4243.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.6450;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.43;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4243,471,0 chrXIII 669355 . C T 4262.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.5663;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.39;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4262,471,0 chrXIII 669472 . T C 4274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=197;Dels=0.00;FS=3.717;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=1.319;QD=21.70;ReadPosRankSum=1.696;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:1,192:197:99:4274,462,0 chrXIII 669628 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.2814;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=24.29;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3263,345,0 chrXIII 669658 . A T 3134 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.21;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3167,336,0 chrXIII 669672 . T A 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=3.962;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.483;QD=21.48;ReadPosRankSum=1.647;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2653,291,0 chrXIII 669995 . C T 3046 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.80;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3079,330,0 chrXIII 670023 . A G 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=6.021;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.620;QD=24.29;ReadPosRankSum=1.704;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3045,336,0 chrXIII 670228 . T C 4236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.723;DP=194;Dels=0.00;FS=8.477;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.614;QD=21.84;ReadPosRankSum=2.860;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:4,188:194:99:4236,440,0 chrXIII 670789 . A G 2839 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2872,315,0 chrXIII 671095 . T C 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=3.953;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.887;QD=23.05;ReadPosRankSum=1.690;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3780,429,0 chrXIII 671155 . A G 3487.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.2627;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.07;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3487,381,0 chrXIII 671221 . T C 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.5643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.316;QD=22.87;ReadPosRankSum=1.663;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3453,378,0 chrXIII 671402 . T C 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=128;Dels=0.00;FS=3.928;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.632;QD=21.93;ReadPosRankSum=1.677;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2840,309,0 chrXIII 671526 . G C 2478 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2511,273,0 chrXIII 672129 . T C 4731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.256;DP=241;Dels=0.00;FS=16.571;HaplotypeScore=15.2131;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.150;QD=19.63;ReadPosRankSum=3.388;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:4,235:241:99:4731,537,0 chrXIII 672760 . A G 5651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=245;Dels=0.00;FS=9.653;HaplotypeScore=20.6201;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.139;QD=23.07;ReadPosRankSum=2.429;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:2,237:245:99:5651,639,0 chrXIII 673042 . G A 5545.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=10.9388;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.92;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5545,589,0 chrXIII 673147 . T A 6526.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=17.5176;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.35;SB=-3.400e+03 GT:AD:DP:GQ:PL 1/1:0,268:268:99:6526,709,0 chrXIII 673402 . G A 5692.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=16.9039;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.04;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:0,243:247:99:5692,601,0 chrXIII 673803 . A G 4397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.793;DP=217;Dels=0.00;FS=15.352;HaplotypeScore=17.9858;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.259;QD=20.26;ReadPosRankSum=4.149;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:6,207:217:99:4397,489,0 chrXIII 673846 . A G 5188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=236;Dels=0.00;FS=4.347;HaplotypeScore=14.2381;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.207;QD=21.98;ReadPosRankSum=1.643;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:1,233:236:99:5188,591,0 chrXIII 673975 . G A 6439.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=18.7266;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.83;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,280:282:99:6439,717,0 chrXIII 674192 . A G 6710.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=322;Dels=0.00;FS=5.621;HaplotypeScore=28.6449;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.831;QD=20.84;ReadPosRankSum=2.922;SB=-3.204e+03 GT:AD:DP:GQ:PL 1/1:3,317:322:99:6710,744,0 chrXIII 674283 . C T 8290.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=30.3746;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.96;SB=-4.425e+03 GT:AD:DP:GQ:PL 1/1:0,343:346:99:8290,907,0 chrXIII 674402 . T A 5555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.108;DP=243;Dels=0.00;FS=15.864;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.574;QD=22.86;ReadPosRankSum=3.353;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:4,239:243:99:5555,603,0 chrXIII 674833 . G A 1815 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.62;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1848,198,0 chrXIII 675083 . A C 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=158;Dels=0.00;FS=13.335;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-0.874;QD=24.87;ReadPosRankSum=2.402;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3929,438,0 chrXIII 675245 . G C 3576.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.79;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3576,390,0 chrXIII 675266 . T C 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=185;Dels=0.00;FS=13.487;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=0.240;QD=18.72;ReadPosRankSum=2.896;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:3,181:185:99:3463,378,0 chrXIII 675283 . G A 3498.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=18.91;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3498,375,0 chrXIII 675362 . G A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.8362;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.14;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3471,366,0 chrXIII 675617 . T C 3466.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.1766;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.66;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3466,381,0 chrXIII 675859 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.403;QD=22.82;ReadPosRankSum=1.708;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3332,372,0 chrXIII 675891 . T C 4017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.594;QD=22.57;ReadPosRankSum=1.594;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:4017,450,0 chrXIII 675922 . C T 4759.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.5741;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.68;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4759,513,0 chrXIII 675974 . G A 4342.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.3707;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.18;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4342,460,0 chrXIII 676154 . G C 5421.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=15.1028;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=24.09;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,219:225:99:5421,588,0 chrXIII 676417 . C T 4994.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=11.3951;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.22;SB=-3.167e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:4994,529,0 chrXIII 676426 . C T 4794.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=10.2867;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.02;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:4794,525,0 chrXIII 676599 . G C 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.2534;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-1.245;QD=17.65;ReadPosRankSum=1.588;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:1,192:196:99:3460,384,0 chrXIII 676600 . C A 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.946;QD=18.38;ReadPosRankSum=1.696;SB=-2.443e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:3603,393,0 chrXIII 676801 . A G 5330.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.68;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5330,588,0 chrXIII 676973 . G C 3745.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.03;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3745,411,0 chrXIII 676978 . A G 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-0.529;QD=22.85;ReadPosRankSum=1.711;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3816,408,0 chrXIII 677046 . C T 2303 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.19;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2336,255,0 chrXIII 677544 . A C 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.351;QD=21.14;ReadPosRankSum=1.708;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3056,333,0 chrXIII 677619 . G A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3372,360,0 chrXIII 677707 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.53;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3605,384,0 chrXIII 678111 . C T 3718.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3718,387,0 chrXIII 678210 . C T 3718.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=16.4761;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.67;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3718,411,0 chrXIII 678831 . G A 3657.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.1992;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.64;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3657,390,0 chrXIII 679230 . T C 3724.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.87;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3724,405,0 chrXIII 679747 . A G 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=3.037;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.151;QD=22.50;ReadPosRankSum=2.313;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2486,273,0 chrXIII 680063 . C T 3472.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.72;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3472,363,0 chrXIII 680145 . A G 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.339;DP=133;Dels=0.00;FS=9.080;HaplotypeScore=14.3395;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.445;QD=22.09;ReadPosRankSum=3.325;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:4,128:133:99:2971,324,0 chrXIII 680337 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3116,327,0 chrXIII 680399 . A G 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.698;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.2040;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.680;QD=24.36;ReadPosRankSum=1.655;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3289,351,0 chrXIII 680463 . A G 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=120;Dels=0.00;FS=2.901;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.564;QD=21.72;ReadPosRankSum=2.327;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2640,291,0 chrXIII 680501 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.5466;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.72;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3032,327,0 chrXIII 680769 . T C 3342.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.70;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3342,366,0 chrXIII 680936 . T C 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.939;DP=131;Dels=0.00;FS=2.815;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.066;QD=21.02;ReadPosRankSum=1.977;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2786,303,0 chrXIII 680940 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=19.36;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2646,291,0 chrXIII 681326 . C T 2855 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2888,309,0 chrXIII 681495 . C T 2762 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.61;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2795,300,0 chrXIII 681830 . T C 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=156;Dels=0.00;FS=4.050;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.324;QD=21.34;ReadPosRankSum=-0.034;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3329,378,0 chrXIII 682194 . G A 2994 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.34;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3027,330,0 chrXIII 682560 . G A 3759.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.06;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3759,411,0 chrXIII 682641 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.28;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2863,306,0 chrXIII 683144 . T C 7518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=330;Dels=0.00;FS=5.877;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.414;QD=22.78;ReadPosRankSum=2.905;SB=-3.732e+03 GT:AD:DP:GQ:PL 1/1:3,324:330:99:7518,823,0 chrXIII 686772 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.03;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2472,258,0 chrXIII 687199 . C T 3073 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.26;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3106,333,0 chrXIII 687331 . C T 1419 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=17.96;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1452,153,0 chrXIII 687334 . G A 1375 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=17.19;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1408,153,0 chrXIII 687551 . T C 2922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.501;QD=24.35;ReadPosRankSum=1.703;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2955,324,0 chrXIII 688004 . G C 4421.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4421,483,0 chrXIII 688238 . C T 4254.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.59;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4254,456,0 chrXIII 688319 . T C 3548.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.47;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3548,393,0 chrXIII 688379 . A G 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.211;QD=21.63;ReadPosRankSum=1.709;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3234,357,0 chrXIII 688587 . G A 2921 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.8269;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.00;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2954,309,0 chrXIII 688631 . T C 2395 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.97;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2428,267,0 chrXIII 688991 . A G 2334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.052;DP=111;Dels=0.00;FS=8.910;HaplotypeScore=100.5238;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.040;QD=21.03;ReadPosRankSum=3.077;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:4,107:111:99:2367,255,0 chrXIII 689009 . C T 2645 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.61;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2678,285,0 chrXIII 689061 . A T 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.3094;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-1.439;QD=19.45;ReadPosRankSum=1.599;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2561,279,0 chrXIII 689079 . A C 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.0207;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.528;QD=20.07;ReadPosRankSum=1.560;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2883,321,0 chrXIII 689423 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.72;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3511,378,0 chrXIII 689462 . T A 3164 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.6380;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.44;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3197,336,0 chrXIII 689571 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2887,312,0 chrXIII 689685 . G C 2378 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.22;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2411,261,0 chrXIII 690172 . A G 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.749;DP=159;Dels=0.00;FS=5.305;HaplotypeScore=16.7683;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.710;QD=21.43;ReadPosRankSum=2.955;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:3,153:159:99:3407,375,0 chrXIII 690225 . T C 4131.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.7185;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.74;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4131,450,0 chrXIII 690252 . G A 4366.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.73;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4366,460,0 chrXIII 690488 . A G 3880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=16.1630;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.521;QD=23.66;ReadPosRankSum=1.690;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3880,420,0 chrXIII 690671 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.0742;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.00;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3425,360,0 chrXIII 690710 . A T 2904 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2937,318,0 chrXIII 691064 . A T 3609.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3609,384,0 chrXIII 691343 . A G 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=145;Dels=0.00;FS=2.912;HaplotypeScore=11.8668;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=1.619;QD=22.90;ReadPosRankSum=2.399;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3321,363,0 chrXIII 691536 . G A 3344.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.8410;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.55;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3344,360,0 chrXIII 691697 . A G 3906.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.7461;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3906,420,0 chrXIII 691745 . G A 4049.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=21.2944;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.25;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4049,438,0 chrXIII 691787 . A G 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=183;Dels=0.00;FS=6.389;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.875;QD=23.82;ReadPosRankSum=2.422;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:2,179:183:99:4359,477,0 chrXIII 691867 . T C 3182 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.50;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3215,360,0 chrXIII 691976 . T C 4285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=180;Dels=0.00;FS=3.415;HaplotypeScore=14.2446;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.962;QD=23.81;ReadPosRankSum=1.713;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4285,468,0 chrXIII 692015 . C T 4599.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.0304;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.59;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4599,478,0 chrXIII 692042 . C A 4679.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.12;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4679,490,0 chrXIII 692398 . C T 2842 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2875,303,0 chrXIII 692624 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=23.54;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3296,363,0 chrXIII 692846 . G A 4630.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=21.84;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4630,484,0 chrXIII 692849 . C T 4344.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=20.20;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4344,468,0 chrXIII 692858 . A G 4037.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.29;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4037,438,0 chrXIII 693152 . G A 3735.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.1417;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.77;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3735,393,0 chrXIII 693184 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.4569;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.07;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3529,369,0 chrXIII 693249 . C T 3453.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.2647;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.49;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3453,363,0 chrXIII 693352 . T C 3399.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.6876;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.11;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3399,369,0 chrXIII 693410 . C T 3190 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.6308;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.73;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3223,345,0 chrXIII 693754 . C T 4631.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.59;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4631,490,0 chrXIII 694247 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=17.3896;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.31;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3598,390,0 chrXIII 694340 . A T 4211.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=23.39;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4211,453,0 chrXIII 694367 . C T 3852.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.7102;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.89;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3852,414,0 chrXIII 694403 . C A 2959 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=18.97;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2992,321,0 chrXIII 694404 . T C 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=0.592;QD=18.92;ReadPosRankSum=1.688;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3023,327,0 chrXIII 694464 . A T 2958 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.40;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2991,318,0 chrXIII 694682 . T C 3565.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.48;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3565,393,0 chrXIII 694691 . G A 3273.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.5481;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=18.81;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3273,351,0 chrXIII 694961 . A G 6796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=282;Dels=0.00;FS=8.157;HaplotypeScore=23.3044;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.402;QD=24.10;ReadPosRankSum=2.414;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:2,276:282:99:6796,750,0 chrXIII 695009 . C A 6914.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=15.5012;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.78;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:1,278:279:99:6914,745,0 chrXIII 695123 . A G 6410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=310;Dels=0.00;FS=2.753;HaplotypeScore=22.6879;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.068;QD=20.68;ReadPosRankSum=2.394;SB=-3.059e+03 GT:AD:DP:GQ:PL 1/1:2,306:310:99:6410,705,0 chrXIII 695197 . A G 7531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.377;DP=310;Dels=0.00;FS=8.519;HaplotypeScore=18.7246;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;MQRankSum=0.789;QD=24.29;ReadPosRankSum=3.422;SB=-3.411e+03 GT:AD:DP:GQ:PL 1/1:4,306:310:99:7531,826,0 chrXIII 695300 . G A 3952.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=22.33;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3952,426,0 chrXIII 695433 . A G 3892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.246;QD=21.87;ReadPosRankSum=1.713;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3892,432,0 chrXIII 695736 . C T 3909.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=23.27;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3909,420,0 chrXIII 695793 . A G 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.175;DP=162;Dels=0.00;FS=12.430;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-0.945;QD=19.28;ReadPosRankSum=3.317;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:4,156:162:99:3156,348,0 chrXIII 695805 . G A 2816 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=19.69;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2849,303,0 chrXIII 696957 . T C 4818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=222;Dels=0.00;FS=3.030;HaplotypeScore=18.9979;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.536;QD=21.70;ReadPosRankSum=2.405;SB=-2.672e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:4818,531,0 chrXIII 697269 . C T 4607.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=24.38;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4607,493,0 chrXIII 697520 . A G 4535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=189;Dels=0.00;FS=3.032;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.470;QD=23.99;ReadPosRankSum=2.397;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4535,495,0 chrXIII 697594 . A C 4229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.3564;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.421;QD=23.63;ReadPosRankSum=1.713;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:4229,462,0 chrXIII 697902 . C T 4234.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.4884;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.51;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4234,447,0 chrXIII 697993 . G A 4465.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.14;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4465,489,0 chrXIII 698166 . G T 4319.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=17.6377;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.92;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4319,454,0 chrXIII 698264 . C G 3386.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.6223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3386,369,0 chrXIII 699531 . A C 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=3.340;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.521;QD=22.30;ReadPosRankSum=1.669;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3658,414,0 chrXIII 699812 . T C 4654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.732;QD=24.89;ReadPosRankSum=1.695;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4654,519,0 chrXIII 700452 . T A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.0703;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.13;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3497,369,0 chrXIII 700883 . G A 3335.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.8608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3335,348,0 chrXIII 701088 . G T 3315.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.0879;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.38;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,132:136:99:3315,345,0 chrXIII 701458 . T C 1869 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1902,213,0 chrXIII 701606 . T A 2175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=116;Dels=0.00;FS=3.326;HaplotypeScore=28.0317;MLEAC=2;MLEAF=1.00;MQ=60.55;MQ0=0;MQRankSum=0.820;QD=18.75;ReadPosRankSum=1.702;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2208,237,0 chrXIII 702308 . T C 5286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=245;Dels=0.00;FS=4.230;HaplotypeScore=15.0835;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.180;QD=21.58;ReadPosRankSum=1.718;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:1,240:245:99:5286,573,0 chrXIII 702572 . G A 3315.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.71;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3315,360,0 chrXIII 702605 . C T 4304.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.5662;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.88;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4304,454,0 chrXIII 702665 . T C 4492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=3.557;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.564;QD=23.89;ReadPosRankSum=1.695;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:1,185:188:99:4492,492,0 chrXIII 703487 . T C 1120 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=16.23;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1153,126,0 chrXIII 703489 . A G 1104 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=16.24;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1137,123,0 chrXIII 703549 . T C 379 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.92;MQ0=0;QD=7.29;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:45:412,45,0 chrXIII 703588 . C T 366 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=7.32;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:42:399,42,0 chrXIII 703860 . A G 3489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=4.594;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.564;QD=24.23;ReadPosRankSum=1.708;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3489,375,0 chrXIII 703913 . T G 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.5646;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=1.347;QD=21.50;ReadPosRankSum=-1.629;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:2979,333,0 chrXIII 703969 . C T 3287.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.7147;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.91;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3287,363,0 chrXIII 703990 . C T 3387.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.85;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3387,360,0 chrXIII 704425 . A T 2306 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.61;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2339,249,0 chrXIII 704551 . C T 1945 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9065;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=18.18;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1978,210,0 chrXIII 704563 . A G 2176 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=19.26;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2209,240,0 chrXIII 704607 . C T 2544 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.35;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2577,276,0 chrXIII 704692 . C T 1780 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=22.53;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1813,198,0 chrXIII 704704 . T C 1550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-1.102;QD=19.87;ReadPosRankSum=1.687;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1583,174,0 chrXIII 704707 . T C 1522 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=20.29;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1555,171,0 chrXIII 704739 . T G 1584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=84;Dels=0.00;FS=6.133;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.159;QD=18.86;ReadPosRankSum=2.916;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:3,80:84:99:1617,183,0 chrXIII 704858 . T G 2845 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.2735;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.23;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2878,318,0 chrXIII 705104 . C T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=25.37;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3475,366,0 chrXIII 705208 . A G 2671 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.83;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2704,303,0 chrXIII 705271 . A G 2901 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.01;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2934,324,0 chrXIII 705286 . A G 2816 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.42;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2849,312,0 chrXIII 705307 . A G 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=151;Dels=0.00;FS=2.834;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=0.887;QD=18.97;ReadPosRankSum=2.352;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:2897,318,0 chrXIII 705665 . G A 3934.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=23.56;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3934,412,0 chrXIII 705679 . T C 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=0.496;QD=22.35;ReadPosRankSum=1.688;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3509,384,0 chrXIII 705697 . G A 3077 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=20.51;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3110,330,0 chrXIII 705701 . A C 2887 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=18.99;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2920,321,0 chrXIII 705940 . C T 2820 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.9888;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.74;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2853,306,0 chrXIII 706063 . A G 1946 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.6214;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.87;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1979,216,0 chrXIII 706072 . G A 1975 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.6722;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.24;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2008,216,0 chrXIII 706102 . T A 2415 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=21.37;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2448,258,0 chrXIII 706316 . T C 3124 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=21.69;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3157,354,0 chrXIII 706357 . A G 2061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;DP=110;Dels=0.00;FS=3.050;HaplotypeScore=4.5691;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;MQRankSum=-0.270;QD=18.74;ReadPosRankSum=1.192;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2094,231,0 chrXIII 706360 . C T 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.177;HaplotypeScore=3.6477;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=-0.033;QD=19.28;ReadPosRankSum=1.569;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2077,219,0 chrXIII 706368 . T G 1940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=0.266;QD=18.65;ReadPosRankSum=1.666;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1973,219,0 chrXIII 706399 . T G 1566 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.21;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1599,177,0 chrXIII 706931 . T C 2665 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.7630;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.60;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2698,300,0 chrXIII 706935 . T C 2466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=3.301;HaplotypeScore=5.2856;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.685;QD=17.61;ReadPosRankSum=1.682;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2499,279,0 chrXIII 707030 . A G 2203 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.40;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2236,246,0 chrXIII 707035 . G T 2325 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.93;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2358,246,0 chrXIII 707109 . C T 2853 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.0882;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.29;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2886,306,0 chrXIII 707180 . A T 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=152;Dels=0.00;FS=8.881;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-1.399;QD=24.58;ReadPosRankSum=2.401;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3736,396,0 chrXIII 707281 . A G 3395.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=25.72;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3395,372,0 chrXIII 707429 . G A 4446.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.2931;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.52;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4446,466,0 chrXIII 707624 . T C 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=166;Dels=0.00;FS=2.884;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.511;QD=23.54;ReadPosRankSum=2.420;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3907,423,0 chrXIII 707917 . G A 3836.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=24.13;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3836,411,0 chrXIII 708061 . G A 4101.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=22.29;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4101,438,0 chrXIII 708064 . C A 4095.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=22.38;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4095,430,0 chrXIII 708117 . G A 2269 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=41.45;MQ0=0;QD=15.03;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2302,246,0 chrXIII 708126 . A G 1946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=38.76;MQ0=0;MQRankSum=-1.398;QD=13.33;ReadPosRankSum=1.684;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:1979,216,0 chrXIII 708130 . T C 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=148;Dels=0.00;FS=9.167;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;MQRankSum=-2.347;QD=13.26;ReadPosRankSum=3.364;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:4,144:148:99:1996,213,0 chrXIII 708165 . A C 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=162;Dels=0.00;FS=6.378;HaplotypeScore=4.2946;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;MQRankSum=-0.538;QD=15.08;ReadPosRankSum=2.328;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:2476,276,0 chrXIII 708169 . T C 2469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;MQRankSum=-1.467;QD=15.53;ReadPosRankSum=1.710;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:2502,270,0 chrXIII 708177 . A G 2277 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=14.60;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2310,258,0 chrXIII 708242 . G A 2389 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=18.10;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2422,261,0 chrXIII 708248 . A T 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;MQRankSum=-0.892;QD=18.07;ReadPosRankSum=1.656;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2491,267,0 chrXIII 708259 . C A 2486 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=18.69;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2519,270,0 chrXIII 708336 . G A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.0479;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=23.33;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3523,375,0 chrXIII 708380 . C T 3769.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=24.32;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3769,399,0 chrXIII 708449 . G A 3910.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=25.89;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3910,409,0 chrXIII 708515 . A G 2867 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.56;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2900,318,0 chrXIII 708535 . C G 2271 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=19.75;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2304,258,0 chrXIII 708648 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=21.53;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3509,369,0 chrXIII 708659 . T C 3178 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=20.37;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3211,351,0 chrXIII 708678 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.5972;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=19.85;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3150,333,0 chrXIII 708752 . C T 2688 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=25.36;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2721,294,0 chrXIII 708816 . G A 3288.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=26.10;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3288,345,0 chrXIII 708850 . G A 3532.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7925;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=25.78;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3532,367,0 chrXIII 708880 . C T 3378.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=24.30;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3378,357,0 chrXIII 709047 . A G 3210.99 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.5052;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.96;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3244,357,0 chrXIII 709130 . C G 4154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=15.0082;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-1.467;QD=22.58;ReadPosRankSum=1.675;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:4154,471,0 chrXIII 709221 . A G 5780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=250;Dels=0.00;FS=5.194;HaplotypeScore=13.8765;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.117;QD=23.12;ReadPosRankSum=1.704;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,247:250:99:5780,660,0 chrXIII 709259 . A C 5765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.362;DP=249;Dels=0.00;FS=2.530;HaplotypeScore=21.3653;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-2.142;QD=23.15;ReadPosRankSum=1.053;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:3,244:248:99:5765,612,0 chrXIII 709343 . C T 4310.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.6620;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.68;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4310,459,0 chrXIII 709368 . G A 4746.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=4.5429;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.93;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4746,505,0 chrXIII 709513 . G A 3038 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.02;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3071,327,0 chrXIII 709549 . G C 2953 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.4194;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.25;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2986,327,0 chrXIII 709740 . T C 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=3.595;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=1.168;QD=23.28;ReadPosRankSum=0.860;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3176,354,0 chrXIII 709763 . T C 3075 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.96;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3108,339,0 chrXIII 709817 . C T 3483.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.11;SB=-2.110e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3483,369,0 chrXIII 709860 . A G 3683.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=157;Dels=0.00;FS=3.419;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=1.021;QD=23.46;ReadPosRankSum=1.688;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3683,402,0 chrXIII 709938 . G A 2915 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=20.97;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2948,315,0 chrXIII 709940 . A C 2800 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.00;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2833,315,0 chrXIII 709983 . G A 3698.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.41;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3698,390,0 chrXIII 710039 . C T 4282.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.61;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4282,459,0 chrXIII 710067 . G T 3671.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.15;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3671,393,0 chrXIII 710099 . C T 3730.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.61;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3730,399,0 chrXIII 710133 . A G 2996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=155;Dels=0.00;FS=10.566;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-2.340;QD=19.33;ReadPosRankSum=2.928;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:3,151:155:99:3029,327,0 chrXIII 710137 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=20.73;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3246,351,0 chrXIII 710293 . C T 3911.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.87;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3911,432,0 chrXIII 710381 . T C 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=3.044;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.145;QD=22.29;ReadPosRankSum=1.706;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2953,327,0 chrXIII 710402 . G A 3672.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.54;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3672,387,0 chrXIII 710470 . C T 4024.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.69;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4024,426,0 chrXIII 710608 . A C 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=171;Dels=0.00;FS=11.194;HaplotypeScore=7.4934;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.065;QD=23.36;ReadPosRankSum=2.947;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:3994,447,0 chrXIII 710752 . T C 7104.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.65;SB=-3.078e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:7104,780,0 chrXIII 710845 . G A 4886.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.3846;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.555;QD=23.60;ReadPosRankSum=1.110;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4886,520,0 chrXIII 710880 . T A 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=195;Dels=0.00;FS=3.216;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=1.306;QD=22.39;ReadPosRankSum=1.714;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4367,474,0 chrXIII 710897 . A C 4197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-0.514;QD=20.99;ReadPosRankSum=1.715;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4197,468,0 chrXIII 711019 . T G 5134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=230;Dels=0.00;FS=4.323;HaplotypeScore=19.1330;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.024;QD=22.32;ReadPosRankSum=1.717;SB=-2.267e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5134,570,0 chrXIII 711139 . T C 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=124;Dels=0.00;FS=6.948;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-0.307;QD=21.69;ReadPosRankSum=2.410;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2723,303,0 chrXIII 711514 . A G 3979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=170;Dels=0.00;FS=6.973;HaplotypeScore=19.9790;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.258;QD=23.41;ReadPosRankSum=2.391;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3979,435,0 chrXIII 711575 . G A 4237.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.8482;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4237,453,0 chrXIII 711900 . A G 3473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=149;Dels=0.00;FS=2.622;HaplotypeScore=13.6355;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.592;QD=23.31;ReadPosRankSum=2.417;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3473,381,0 chrXIII 712021 . G A 2138 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2171,228,0 chrXIII 712058 . G A 1953 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.70;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1986,210,0 chrXIII 712271 . A G 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=105;Dels=0.00;FS=4.108;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.026;QD=22.92;ReadPosRankSum=1.698;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2440,270,0 chrXIII 712385 . A C 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.923;DP=143;Dels=0.00;FS=22.995;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-1.933;QD=19.03;ReadPosRankSum=4.006;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:6,134:143:99:2754,297,0 chrXIII 712387 . A G 2666 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.04;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2699,303,0 chrXIII 712461 . G A 3954.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.7794;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.82;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3954,415,0 chrXIII 712539 . G C 3956.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.5923;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.27;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,165:170:99:3956,438,0 chrXIII 712621 . A G 4500.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=23.94;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4500,498,0 chrXIII 712702 . T C 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=173;Dels=0.00;FS=6.097;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.172;QD=22.49;ReadPosRankSum=2.393;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3891,432,0 chrXIII 712889 . G T 3687.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.48;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3687,387,0 chrXIII 713054 . G A 3178 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.70;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3211,351,0 chrXIII 713074 . T A 3399.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.44;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3399,369,0 chrXIII 713194 . A G 2851 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=12.9795;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2884,324,0 chrXIII 713537 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.347;QD=22.14;ReadPosRankSum=1.660;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3265,360,0 chrXIII 713573 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3296,360,0 chrXIII 713731 . A C 3210.99 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3244,366,0 chrXIII 713803 . T G 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.3487;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.893;QD=23.68;ReadPosRankSum=1.258;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3064,348,0 chrXIII 713912 . T G 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.439;QD=24.35;ReadPosRankSum=1.688;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3848,420,0 chrXIII 713980 . G T 3125 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.2926;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3158,339,0 chrXIII 714945 . C T 4026.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.30;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4026,438,0 chrXIII 714957 . C A 4086.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.8629;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=20.95;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4086,433,0 chrXIII 715098 . A G 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=3.091;HaplotypeScore=7.0895;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.669;QD=23.10;ReadPosRankSum=1.711;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3766,411,0 chrXIII 715145 . A G 4318.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=22.61;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4318,471,0 chrXIII 715257 . T C 4433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=194;Dels=0.00;FS=3.006;HaplotypeScore=13.4470;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-2.205;QD=22.85;ReadPosRankSum=2.398;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:2,189:194:99:4433,486,0 chrXIII 715500 . T C 4311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=3.860;HaplotypeScore=5.8220;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.135;QD=23.82;ReadPosRankSum=1.713;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4311,483,0 chrXIII 715590 . A T 4817.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=15.9218;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.97;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4817,508,0 chrXIII 715643 . T C 4606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.345;DP=197;Dels=0.00;FS=5.234;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-2.051;QD=23.38;ReadPosRankSum=3.336;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:4,193:197:99:4606,507,0 chrXIII 715773 . C T 4158.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.6849;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.03;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4158,447,0 chrXIII 715919 . T C 2883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=145;Dels=0.00;FS=7.441;HaplotypeScore=10.0491;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.352;QD=19.88;ReadPosRankSum=2.364;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:2916,330,0 chrXIII 715953 . T C 3202 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.7333;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.21;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3235,360,0 chrXIII 715971 . G A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3073;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.18;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3327,363,0 chrXIII 716317 . G A 3516.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.6921;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.68;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3516,369,0 chrXIII 716342 . T C 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=5.021;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.618;QD=20.45;ReadPosRankSum=1.659;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2978,330,0 chrXIII 716386 . T C 2037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.157;DP=104;Dels=0.00;FS=7.683;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.646;QD=19.59;ReadPosRankSum=2.352;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:2,99:104:99:2070,228,0 chrXIII 716494 . C T 2299 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.54;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2332,246,0 chrXIII 716541 . G T 2293 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2326,252,0 chrXIII 716798 . G A 3337.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3337,348,0 chrXIII 718679 . G A 4390.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=12.2481;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.11;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4390,463,0 chrXIII 719499 . A T 4715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=198;Dels=0.00;FS=4.137;HaplotypeScore=6.5903;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.958;QD=23.81;ReadPosRankSum=1.679;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4715,510,0 chrXIII 719516 . G A 4536.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.3365;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.50;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4536,483,0 chrXIII 719811 . A G 5565.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=246;Dels=0.00;FS=5.495;HaplotypeScore=16.5829;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.184;QD=22.62;ReadPosRankSum=2.971;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:3,242:246:99:5565,606,0 chrXIII 719868 . T A 4245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.729;DP=205;Dels=0.00;FS=12.631;HaplotypeScore=21.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=2.108;QD=20.71;ReadPosRankSum=2.897;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:3,202:205:99:4245,462,0 chrXIII 720435 . C T 3351.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.90;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3351,357,0 chrXIII 720657 . C G 4199.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.53;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4199,468,0 chrXIII 720681 . T C 4324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=197;Dels=0.00;FS=7.330;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.814;QD=21.95;ReadPosRankSum=2.387;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4324,480,0 chrXIII 721068 . T C 5209.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.3569;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.431;QD=25.16;ReadPosRankSum=1.515;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:5209,567,0 chrXIII 721309 . A T 5391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=1.250;QD=22.75;ReadPosRankSum=1.717;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:5391,594,0 chrXIII 721409 . A C 5085.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=6.4772;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.11;SB=-2.795e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5085,573,0 chrXIII 721557 . A G 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=211;Dels=0.00;FS=3.026;HaplotypeScore=7.0847;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=-1.309;QD=20.27;ReadPosRankSum=2.345;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:4277,474,0 chrXIII 721563 . A G 4061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=201;Dels=0.00;FS=3.027;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=0.265;QD=20.20;ReadPosRankSum=2.425;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:2,197:201:99:4061,447,0 chrXIII 721591 . G T 4044.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.42;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4044,418,0 chrXIII 721694 . G A 4335.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.2081;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.82;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4335,460,0 chrXIII 721872 . C G 4601.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.60;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:4601,525,0 chrXIII 722213 . G C 4147.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.3194;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.66;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4147,453,0 chrXIII 722407 . C A 4085.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.2001;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.75;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4085,432,0 chrXIII 722436 . C T 4022.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.10;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4022,432,0 chrXIII 722723 . T C 6014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=11.1223;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.075;QD=21.71;ReadPosRankSum=1.669;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:1,273:277:99:6014,675,0 chrXIII 723405 . T C 4354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=184;Dels=0.00;FS=3.516;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.533;QD=23.66;ReadPosRankSum=1.675;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:4354,471,0 chrXIII 723430 . C T 4273.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.74;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4273,456,0 chrXIII 723720 . G A 2795 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=18.03;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2828,312,0 chrXIII 723721 . C T 2905 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=19.11;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2938,306,0 chrXIII 723828 . A G 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=3.133;HaplotypeScore=13.7596;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.866;QD=22.73;ReadPosRankSum=1.708;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3319,372,0 chrXIII 723996 . T C 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.3419;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-1.216;QD=22.50;ReadPosRankSum=1.711;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:3690,402,0 chrXIII 724142 . G A 3659.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.4052;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.31;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3659,402,0 chrXIII 724434 . T C 4347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=191;Dels=0.00;FS=3.220;HaplotypeScore=10.5579;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.660;QD=22.76;ReadPosRankSum=1.696;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4347,474,0 chrXIII 724793 . T C 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.757;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.152;QD=22.69;ReadPosRankSum=1.671;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2642,294,0 chrXIII 724837 . G A 2673 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2706,288,0 chrXIII 725658 . T G 2222 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2255,249,0 chrXIII 725755 . C G 2120 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2153,237,0 chrXIII 726012 . G A 3087 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3120,336,0 chrXIII 726417 . T C 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=133;Dels=0.00;FS=4.046;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.945;QD=21.95;ReadPosRankSum=1.706;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2953,324,0 chrXIII 726654 . C T 3485.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.63;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3485,369,0 chrXIII 726963 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.8708;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.09;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3133,342,0 chrXIII 727049 . G C 3415.01 SnpCluster AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.0099;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=18.97;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3415,375,0 chrXIII 727057 . A G 3304.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.02;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=0.766;QD=17.12;ReadPosRankSum=1.659;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3304,369,0 chrXIII 727058 . C T 3361.01 SnpCluster AC=2;AF=1.00;AN=2;DP=194;Dels=0.02;FS=0.000;HaplotypeScore=8.6986;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=17.32;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3361,369,0 chrXIII 727107 . A G 3401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.6971;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=-0.897;QD=17.44;ReadPosRankSum=1.697;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:3401,378,0 chrXIII 727303 . C T 2850 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=20.65;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2883,306,0 chrXIII 727306 . T C 2681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.091;DP=146;Dels=0.00;FS=5.268;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-1.487;QD=18.36;ReadPosRankSum=3.103;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:4,139:146:99:2714,300,0 chrXIII 727526 . C T 3876.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.23;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3876,411,0 chrXIII 727646 . G A 3885.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.99;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3885,409,0 chrXIII 727763 . A G 4377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.225;QD=24.18;ReadPosRankSum=1.713;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:1,176:181:99:4377,480,0 chrXIII 728589 . G T 3058 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.32;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3091,333,0 chrXIII 728630 . T A 3015 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.02;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3048,321,0 chrXIII 728848 . G A 2650 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2683,297,0 chrXIII 729020 . G C 3108 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3141,348,0 chrXIII 729284 . T C 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=131;Dels=0.00;FS=6.677;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.591;QD=23.69;ReadPosRankSum=2.412;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3137,345,0 chrXIII 729384 . T C 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.504;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.616;QD=23.86;ReadPosRankSum=2.941;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3626,380,0 chrXIII 729654 . C T 2396 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2429,264,0 chrXIII 729711 . T C 2693 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.02;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2726,306,0 chrXIII 729828 . G A 2389 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.1208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2422,258,0 chrXIII 729862 . C T 2412 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.97;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2445,255,0 chrXIII 729976 . A G 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=121;Dels=0.00;FS=3.002;HaplotypeScore=11.2701;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.115;QD=24.02;ReadPosRankSum=2.366;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:2,117:121:99:2940,321,0 chrXIII 730384 . A G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3349,369,0 chrXIII 730533 . T C 4133.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.513;DP=205;Dels=0.00;FS=12.255;HaplotypeScore=17.7233;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.230;QD=20.16;ReadPosRankSum=3.804;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:5,200:205:99:4133,459,0 chrXIII 730842 . C T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.07;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3461,372,0 chrXIII 731576 . A G 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.730;DP=139;Dels=0.00;FS=12.375;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.256;QD=24.41;ReadPosRankSum=2.876;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:3,135:139:99:3393,369,0 chrXIII 731762 . G T 3103 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.32;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3136,333,0 chrXIII 731933 . C A 2570 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.40;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2603,282,0 chrXIII 732251 . A T 2972 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3005,315,0 chrXIII 732373 . A G 3744.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=24.63;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3744,414,0 chrXIII 732395 . T C 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.668;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.419;QD=23.84;ReadPosRankSum=-1.347;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3671,375,0 chrXIII 732688 . A G 3315.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.35;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3315,366,0 chrXIII 732863 . C T 4897.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=24.24;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4897,525,0 chrXIII 733018 . T C 4286.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=21.76;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4286,483,0 chrXIII 733024 . T C 4152.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=40.99;MQ0=0;QD=20.45;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4152,462,0 chrXIII 734324 . A C 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=3.342;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.739;QD=24.40;ReadPosRankSum=1.707;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3319,357,0 chrXIII 734392 . T C 3034 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.70;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3067,342,0 chrXIII 734558 . A G 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.351;QD=24.71;ReadPosRankSum=1.709;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3657,402,0 chrXIII 734679 . C T 4160.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.68;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4160,441,0 chrXIII 734873 . G A 4053.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.27;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4053,441,0 chrXIII 734912 . T A 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=159;Dels=0.00;FS=13.058;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.070;QD=23.01;ReadPosRankSum=2.867;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:3658,393,0 chrXIII 735107 . T C 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=3.358;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.110;QD=24.19;ReadPosRankSum=1.673;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2887,315,0 chrXIII 735170 . G A 2625 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2658,291,0 chrXIII 735372 . G A 2574 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2607,279,0 chrXIII 735876 . A G 4147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.7342;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.190;QD=23.17;ReadPosRankSum=1.713;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:4147,459,0 chrXIII 736200 . A T 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=155;Dels=0.00;FS=2.985;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-0.426;QD=21.97;ReadPosRankSum=2.385;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3406,363,0 chrXIII 736201 . C T 3302.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.58;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3302,360,0 chrXIII 736533 . A G 4699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=4.002;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.678;QD=24.60;ReadPosRankSum=1.696;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4699,505,0 chrXIII 736827 . G A 2898 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.56;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2931,312,0 chrXIII 736875 . G A 2263 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.60;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2296,243,0 chrXIII 737093 . C T 2314 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=24.88;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2347,249,0 chrXIII 737201 . A G 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=111;Dels=0.00;FS=7.440;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=0.011;QD=23.68;ReadPosRankSum=2.405;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2662,288,0 chrXIII 737273 . C T 2438 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.90;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2471,264,0 chrXIII 737293 . C A 2655 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.50;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2688,294,0 chrXIII 737381 . T G 2845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=2.616;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.579;QD=20.62;ReadPosRankSum=2.414;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2878,315,0 chrXIII 737389 . T C 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-1.230;QD=20.46;ReadPosRankSum=1.684;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2999,330,0 chrXIII 737462 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=24.50;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3553,378,0 chrXIII 737485 . C T 3837.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=25.58;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3837,400,0 chrXIII 737552 . A G 3958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=170;Dels=0.00;FS=2.949;HaplotypeScore=13.4002;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.828;QD=23.28;ReadPosRankSum=2.363;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3958,432,0 chrXIII 737651 . A G 3415.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.39;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3415,375,0 chrXIII 737793 . G A 2999 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.79;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3032,327,0 chrXIII 737933 . C G 2982 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.12;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3015,333,0 chrXIII 738269 . G A 2814 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.0163;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2847,300,0 chrXIII 738608 . T C 2339 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.4222;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.46;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2372,261,0 chrXIII 738828 . A G 2594 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.56;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2627,291,0 chrXIII 738969 . A G 2283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.9297;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.495;QD=23.30;ReadPosRankSum=1.626;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2316,258,0 chrXIII 739012 . T C 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=125;Dels=0.00;FS=3.375;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.313;QD=25.06;ReadPosRankSum=1.676;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:3165,348,0 chrXIII 739150 . G A 2192 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.92;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2225,243,0 chrXIII 740188 . G A 2222 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=22.67;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2255,234,0 chrXIII 740191 . G A 2038 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=21.23;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2071,216,0 chrXIII 740218 . G T 1873 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=18.36;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1906,204,0 chrXIII 740301 . G A 4493.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.01;FS=0.000;HaplotypeScore=7.8543;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4493,475,0 chrXIII 740463 . A G 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.480;QD=21.79;ReadPosRankSum=1.711;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3617,387,0 chrXIII 740583 . T C 3311.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=18.1891;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.22;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3311,375,0 chrXIII 740818 . A G 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=3.352;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.525;QD=23.07;ReadPosRankSum=1.706;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3078,348,0 chrXIII 741162 . G A 2962 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.68;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2995,315,0 chrXIII 741316 . T G 3069 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.24;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3102,348,0 chrXIII 741779 . A G 4304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=199;Dels=0.00;FS=2.790;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.891;QD=21.63;ReadPosRankSum=2.425;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:2,195:199:99:4304,477,0 chrXIII 741880 . C T 3508.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=22.49;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3508,375,0 chrXIII 742214 . A G 3473.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.81;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3473,378,0 chrXIII 742247 . G A 3419.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.74;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3419,369,0 chrXIII 742337 . T G 3584.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.6237;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.46;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3584,387,0 chrXIII 742757 . G C 4452.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.43;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4452,492,0 chrXIII 742863 . A G 4839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=3.947;HaplotypeScore=11.7486;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.680;QD=23.96;ReadPosRankSum=1.698;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4839,537,0 chrXIII 742901 . T C 5017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=218;Dels=0.00;FS=2.883;HaplotypeScore=16.4461;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.938;QD=23.01;ReadPosRankSum=2.427;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:2,214:218:99:5017,552,0 chrXIII 742946 . A G 4749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=198;Dels=0.00;FS=3.860;HaplotypeScore=13.1860;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.328;QD=23.98;ReadPosRankSum=1.714;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4749,522,0 chrXIII 743222 . C T 6396.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=16.6877;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.87;SB=-3.264e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:6396,679,0 chrXIII 743279 . C T 6693.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=15.8461;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.43;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,273:274:99:6693,709,0 chrXIII 743500 . C A 4658.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.95;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4658,513,0 chrXIII 743691 . G C 3223.06 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.70;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3256,360,0 chrXIII 743742 . C T 4984.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.9171;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.80;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4984,529,0 chrXIII 743928 . C T 6051.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.27;SB=-3.529e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:6051,646,0 chrXIII 744216 . A G 3980.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.9528;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.14;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3980,432,0 chrXIII 744231 . C T 4031.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.57;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4031,438,0 chrXIII 744270 . C T 3875.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.17;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3875,417,0 chrXIII 744435 . T A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.90;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3658,408,0 chrXIII 744471 . T C 3029 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.33;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3062,336,0 chrXIII 744735 . C T 3196 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=21.45;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3229,348,0 chrXIII 744855 . T C 3644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=3.040;HaplotypeScore=8.5063;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-1.119;QD=24.62;ReadPosRankSum=1.709;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3644,402,0 chrXIII 744882 . C T 3882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.452;HaplotypeScore=3.2215;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.190;QD=25.05;ReadPosRankSum=-1.017;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3882,409,0 chrXIII 744933 . T C 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;DP=200;Dels=0.00;FS=12.718;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;MQRankSum=-1.424;QD=19.21;ReadPosRankSum=3.389;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:4,194:200:99:3841,420,0 chrXIII 744937 . C T 3780.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=18.90;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3780,399,0 chrXIII 744949 . T C 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=204;Dels=0.00;FS=6.004;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;MQRankSum=-1.764;QD=18.09;ReadPosRankSum=2.936;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:3,201:204:99:3691,399,0 chrXIII 744975 . C T 3751.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=18.85;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3751,396,0 chrXIII 744999 . A G 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=175;Dels=0.00;FS=3.035;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;MQRankSum=-1.902;QD=15.81;ReadPosRankSum=2.422;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:2799,303,0 chrXIII 745005 . C T 2603 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.3348;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=15.40;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:2636,282,0 chrXIII 745236 . G T 3528.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=24.50;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3528,372,0 chrXIII 745377 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.3525;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.20;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2817,300,0 chrXIII 745976 . C T 2925 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.2081;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.58;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2958,318,0 chrXIII 746043 . C T 3197 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.59;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3230,342,0 chrXIII 746072 . G C 2781 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.61;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2814,312,0 chrXIII 746108 . A G 2946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=131;Dels=0.00;FS=6.552;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=1.869;QD=22.49;ReadPosRankSum=2.411;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:2,125:131:99:2979,336,0 chrXIII 746305 . T A 4302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.934;QD=23.64;ReadPosRankSum=1.576;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4302,457,0 chrXIII 746448 . T C 5997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.698;DP=259;Dels=0.00;FS=7.895;HaplotypeScore=16.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.407;QD=23.15;ReadPosRankSum=3.807;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:5,254:259:99:5997,660,0 chrXIII 747018 . A G 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=162;Dels=0.00;FS=7.324;HaplotypeScore=12.7166;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.311;QD=21.28;ReadPosRankSum=2.328;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3447,378,0 chrXIII 747051 . T C 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.153;QD=22.87;ReadPosRankSum=1.709;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3385,381,0 chrXIII 747252 . C T 4667.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=15.2637;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.43;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4667,501,0 chrXIII 747330 . T C 3997.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3997,435,0 chrXIII 747396 . G A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.99;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3609,381,0 chrXIII 747492 . G A 5710.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=11.7848;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.04;SB=-2.984e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5710,610,0 chrXIII 747526 . T C 5020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.4821;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.307;QD=23.79;ReadPosRankSum=1.699;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:1,208:211:99:5020,549,0 chrXIII 747983 . T C 1770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=85;Dels=0.00;FS=3.063;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-1.364;QD=20.82;ReadPosRankSum=2.333;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:2,82:85:99:1803,195,0 chrXIII 747998 . G C 1807 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.08;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1840,201,0 chrXIII 748010 . G A 1816 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.64;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1849,195,0 chrXIII 748055 . C T 2433 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.72;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2466,258,0 chrXIII 748462 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.74;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3680,387,0 chrXIII 748748 . G A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=7.3988;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.03;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3408,363,0 chrXIII 749345 . A G 3105 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3138,342,0 chrXIII 750116 . A G 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=134;Dels=0.00;FS=2.880;HaplotypeScore=6.3020;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.780;QD=22.21;ReadPosRankSum=2.376;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3009,333,0 chrXIII 750175 . A G 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=172;Dels=0.00;FS=2.928;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.065;QD=23.60;ReadPosRankSum=2.392;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:2,169:172:99:4060,441,0 chrXIII 750242 . C T 3506.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.33;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3506,378,0 chrXIII 750743 . G A 4833.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=21.67;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4833,531,0 chrXIII 750755 . T A 4921.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=22.27;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4921,537,0 chrXIII 750779 . T C 4392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=232;Dels=0.00;FS=3.024;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;MQRankSum=0.090;QD=18.93;ReadPosRankSum=2.428;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:2,230:232:99:4392,492,0 chrXIII 750782 . G A 4498.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=19.56;SB=-3.123e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4498,478,0 chrXIII 750890 . A G 4644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.491;QD=21.50;ReadPosRankSum=1.700;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4644,516,0 chrXIII 751063 . C T 4420.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.05;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:4420,469,0 chrXIII 751101 . C T 4766.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=17.5325;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.14;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4766,496,0 chrXIII 751426 . C T 4285.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.77;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4285,451,0 chrXIII 751484 . C T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.01;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3475,363,0 chrXIII 751518 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.05;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3366,366,0 chrXIII 751640 . T C 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=4.771;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;MQRankSum=0.072;QD=19.79;ReadPosRankSum=1.684;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2883,327,0 chrXIII 751891 . G A 2904 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.70;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2937,309,0 chrXIII 752227 . T G 5182.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.87;SB=-2.968e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5182,582,0 chrXIII 752515 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=22.42;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3082,324,0 chrXIII 752521 . T G 2896 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.14;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2929,315,0 chrXIII 752985 . C A 1525 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=19.81;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1558,171,0 chrXIII 754594 . T C 2916 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2949,321,0 chrXIII 754630 . T C 2941 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2974,330,0 chrXIII 754796 . A T 3459.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.8350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3459,366,0 chrXIII 754943 . C A 3843.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3843,406,0 chrXIII 755107 . G C 3763.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.6175;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.88;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3763,411,0 chrXIII 755265 . G T 2754 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.76;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2787,294,0 chrXIII 755483 . G A 4355.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=24.74;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4355,457,0 chrXIII 755501 . C T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.40;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4141,439,0 chrXIII 755780 . T C 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=4.535;HaplotypeScore=16.6742;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-1.461;QD=19.88;ReadPosRankSum=1.693;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,178:181:99:3598,402,0 chrXIII 755942 . T A 3225.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=138;Dels=0.00;FS=5.613;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.261;QD=23.37;ReadPosRankSum=2.948;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3258,348,0 chrXIII 756198 . A T 4387.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.96;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4387,460,0 chrXIII 756230 . C T 3174 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.51;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3207,342,0 chrXIII 756433 . G T 2587 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=22.11;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2620,288,0 chrXIII 756540 . A G 176.04 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;DP=167;Dels=0.00;FS=1.172;HaplotypeScore=273.9672;MLEAC=1;MLEAF=0.500;MQ=39.96;MQ0=0;MQRankSum=2.023;QD=1.05;ReadPosRankSum=-5.572;SB=-1.120e+02 GT:AD:DP:GQ:PL 0/1:155,12:167:18:206,0,18 chrXIII 756564 . C G 1759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=3.749;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=36.66;MQ0=0;MQRankSum=-0.318;QD=11.97;ReadPosRankSum=1.638;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:1792,198,0 chrXIII 756565 . A C 1703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=3.680;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=36.66;MQ0=0;MQRankSum=-0.130;QD=11.59;ReadPosRankSum=1.638;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:1736,192,0 chrXIII 756577 . T C 1461 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=35.01;MQ0=0;QD=10.29;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1494,165,0 chrXIII 756630 . T A 1813 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=17.60;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1846,195,0 chrXIII 756660 . A T 2569 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=21.77;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2602,282,0 chrXIII 756710 . A G 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=-0.650;QD=21.74;ReadPosRankSum=1.660;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3164,348,0 chrXIII 756713 . G T 3076 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=21.97;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3109,330,0 chrXIII 756979 . A T 437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=40;Dels=0.00;FS=10.067;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;MQRankSum=-0.055;QD=10.92;ReadPosRankSum=1.446;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:7,33:40:51:470,51,0 chrXIII 756991 . A T 104.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;DP=48;Dels=0.00;FS=14.701;HaplotypeScore=28.7049;MLEAC=1;MLEAF=0.500;MQ=35.26;MQ0=0;MQRankSum=-0.763;QD=2.17;ReadPosRankSum=-5.761;SB=-1.890e+02 GT:AD:DP:GQ:PL 0/1:28,20:48:99:134,0,100 chrXIII 757086 . A T 2623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=114;Dels=0.00;FS=7.751;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.831;QD=23.01;ReadPosRankSum=2.385;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2656,285,0 chrXIII 757200 . T C 5005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.7775;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-0.638;QD=24.66;ReadPosRankSum=2.364;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:2,200:203:99:5005,538,0 chrXIII 757281 . T A 5432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=17.7718;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.286;QD=23.62;ReadPosRankSum=2.418;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:2,228:230:99:5432,600,0 chrXIII 757555 . T C 8744.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=388;Dels=0.00;FS=4.087;HaplotypeScore=25.0872;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.112;QD=22.54;ReadPosRankSum=1.634;SB=-3.845e+03 GT:AD:DP:GQ:PL 1/1:1,387:388:99:8744,975,0 chrXIII 757815 . G C 7457.01 PASS AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=17.7492;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.13;SB=-3.775e+03 GT:AD:DP:GQ:PL 1/1:0,335:337:99:7457,814,0 chrXIII 757882 . T C 8976.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=412;Dels=0.00;FS=7.911;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.250;QD=21.79;ReadPosRankSum=2.401;SB=-4.321e+03 GT:AD:DP:GQ:PL 1/1:2,405:412:99:8976,996,0 chrXIII 757906 . C T 8671.01 filter AC=2;AF=1.00;AN=2;DP=377;Dels=0.00;FS=0.000;HaplotypeScore=9.8700;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.00;SB=-3.915e+03 GT:AD:DP:GQ:PL 1/1:0,376:377:99:8671,916,0 chrXIII 757948 . T C 7323.01 PASS AC=2;AF=1.00;AN=2;DP=328;Dels=0.00;FS=0.000;HaplotypeScore=20.6708;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.33;SB=-2.986e+03 GT:AD:DP:GQ:PL 1/1:0,327:328:99:7323,804,0 chrXIII 758017 . A T 7382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.646;DP=333;Dels=0.00;FS=12.175;HaplotypeScore=27.0385;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=0.410;QD=22.17;ReadPosRankSum=3.769;SB=-4.272e+03 GT:AD:DP:GQ:PL 1/1:5,328:333:99:7382,787,0 chrXIII 758053 . A G 7807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.649;DP=356;Dels=0.00;FS=15.551;HaplotypeScore=21.8246;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=-0.722;QD=21.93;ReadPosRankSum=3.723;SB=-4.414e+03 GT:AD:DP:GQ:PL 1/1:5,349:356:99:7807,864,0 chrXIII 758185 . C T 3930.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.6942;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=20.05;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3930,435,0 chrXIII 758197 . T G 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=199;Dels=0.00;FS=19.240;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;MQRankSum=1.107;QD=18.54;ReadPosRankSum=2.944;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:3,195:199:99:3690,405,0 chrXIII 758200 . T C 3532.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=195;Dels=0.00;FS=6.273;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;MQRankSum=-0.133;QD=18.11;ReadPosRankSum=1.714;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:3532,399,0 chrXIII 758254 . C T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=0;QD=18.02;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,200:201:99:3623,387,0 chrXIII 758256 . T C 3484.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.98;MQ0=0;QD=17.78;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,193:196:99:3484,381,0 chrXIII 758281 . C G 2959 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=17.61;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2992,327,0 chrXIII 758293 . A C 2384 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;MQRankSum=-1.634;QD=16.91;ReadPosRankSum=1.708;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2417,276,0 chrXIII 758299 . C T 2179 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.50;MQ0=0;QD=16.38;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2212,240,0 chrXIII 758302 . C T 2080 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;QD=16.00;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2113,237,0 chrXIII 758318 . C T 1717 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.55;MQ0=0;QD=15.90;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1750,189,0 chrXIII 758348 . C T 1387 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=16.13;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1420,153,0 chrXIII 758437 . C T 2605 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=8.4562;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=24.12;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2638,282,0 chrXIII 758475 . G A 2208 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=22.30;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2241,249,0 chrXIII 758494 . T C 2058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-0.018;QD=21.22;ReadPosRankSum=1.661;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2091,234,0 chrXIII 758527 . C T 1852 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=16.25;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1885,201,0 chrXIII 758529 . T C 1882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;MQRankSum=-1.075;QD=16.22;ReadPosRankSum=1.643;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1915,207,0 chrXIII 758570 . G C 2781 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=20.15;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2814,303,0 chrXIII 758847 . A G 4397.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=202.4658;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=19.20;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:4397,480,0 chrXIII 758873 . A G 4821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=267;Dels=0.00;FS=4.304;HaplotypeScore=11.2697;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-1.063;QD=18.06;ReadPosRankSum=1.680;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:1,263:267:99:4821,531,0 chrXIII 759082 . A G 145.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-5.238;DP=242;Dels=0.01;FS=0.000;HaplotypeScore=437.7065;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=0.752;QD=0.60;ReadPosRankSum=-6.579;SB=-4.806e+01 GT:AD:DP:GQ:PL 1/1:209,19:239:21:178,21,0 chrXIII 759350 . A G 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-1.570;QD=21.24;ReadPosRankSum=1.640;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3240,357,0 chrXIII 759554 . C T 3153 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.88;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3186,339,0 chrXIII 759582 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.2304;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.41;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3316,351,0 chrXIII 759891 . C A 4403.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=18.8624;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.81;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,189:193:99:4403,471,0 chrXIII 759962 . G A 7246.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=16.3530;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-3.161e+03 GT:AD:DP:GQ:PL 1/1:0,295:296:99:7246,766,0 chrXIII 760211 . T A 8068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=335;Dels=0.00;FS=3.196;HaplotypeScore=17.7563;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=1.089;QD=24.08;ReadPosRankSum=1.711;SB=-4.320e+03 GT:AD:DP:GQ:PL 1/1:1,334:335:99:8068,871,0 chrXIII 760322 . A G 5502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=274;Dels=0.00;FS=2.571;HaplotypeScore=20.1077;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.022;QD=20.08;ReadPosRankSum=2.879;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:3,271:274:99:5502,606,0 chrXIII 760349 . C G 4365.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=14.1537;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=18.26;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,236:239:99:4365,483,0 chrXIII 760768 . C T 6167.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=15.3119;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.84;SB=-3.103e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:6167,652,0 chrXIII 760816 . A C 6090.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=11.1226;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.16;SB=-2.988e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:6090,666,0 chrXIII 760892 . G A 4442.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.10;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4442,486,0 chrXIII 760898 . C T 4479.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=22.06;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4479,483,0 chrXIII 761015 . T C 4751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=210;Dels=0.00;FS=3.496;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.149;QD=22.62;ReadPosRankSum=1.715;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:1,207:210:99:4751,522,0 chrXIII 761300 . T C 2764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.443;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=1.100;QD=19.88;ReadPosRankSum=1.682;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2797,306,0 chrXIII 761318 . T A 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=3.614;HaplotypeScore=5.4811;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=1.441;QD=20.05;ReadPosRankSum=1.706;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2660,291,0 chrXIII 761436 . G A 4206.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.9783;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=24.03;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4206,444,0 chrXIII 761468 . T C 3140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.242;DP=154;Dels=0.00;FS=8.533;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=0.463;QD=20.39;ReadPosRankSum=3.379;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:4,149:154:99:3173,345,0 chrXIII 761480 . T C 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.5313;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=0.926;QD=19.52;ReadPosRankSum=1.710;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3136,354,0 chrXIII 761607 . C A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=20.85;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3837,420,0 chrXIII 761608 . A C 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=3.327;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=0.758;QD=20.38;ReadPosRankSum=1.601;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3770,423,0 chrXIII 761694 . G A 4434.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=24.63;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4434,469,0 chrXIII 761798 . T C 3055 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.78;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3088,348,0 chrXIII 761801 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=21.85;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3267,339,0 chrXIII 761973 . C T 2952 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.06;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2985,318,0 chrXIII 762006 . C T 2911 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.48;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2944,315,0 chrXIII 762262 . T C 3841.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.2126;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.73;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3841,420,0 chrXIII 762346 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.67;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:2983,318,0 chrXIII 762356 . T C 2800 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.9659;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.86;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2833,315,0 chrXIII 762442 . C A 3301.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.25;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3301,357,0 chrXIII 762467 . G C 3199 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.69;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3232,348,0 chrXIII 762636 . G T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=24.42;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3589,387,0 chrXIII 762774 . C T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=21.26;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3402,360,0 chrXIII 762779 . C T 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=5.552;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;MQRankSum=0.943;QD=19.78;ReadPosRankSum=1.688;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3158,336,0 chrXIII 762794 . C T 3103 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;QD=17.73;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3136,336,0 chrXIII 762822 . C T 2385 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=14.54;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2418,249,0 chrXIII 762840 . A C 2125 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;QD=13.71;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2158,237,0 chrXIII 762915 . T C 3378.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.0755;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.11;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,163:168:99:3378,384,0 chrXIII 763157 . A T 2087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.990;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=11.8300;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.338;QD=22.44;ReadPosRankSum=1.367;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:2,90:92:99:2120,211,0 chrXIII 763289 . A G 2218 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=16.0219;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.11;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2251,249,0 chrXIII 763672 . A C 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=149;Dels=0.00;FS=2.580;HaplotypeScore=10.4670;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.728;QD=21.24;ReadPosRankSum=2.898;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:3198,354,0 chrXIII 763864 . G C 2703 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.71;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2736,306,0 chrXIII 763944 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3272;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.19;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2694,288,0 chrXIII 764218 . C T 2414 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.4036;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.15;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2447,267,0 chrXIII 764392 . C T 2675 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.67;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2708,285,0 chrXIII 764401 . A G 2288 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.58;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2321,261,0 chrXIII 764431 . T C 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.817;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.752;QD=22.41;ReadPosRankSum=1.242;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2408,246,0 chrXIII 764629 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.54;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3117,339,0 chrXIII 764686 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.6988;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.08;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3853,414,0 chrXIII 764792 . G C 4027.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=24.55;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4027,441,0 chrXIII 764881 . T C 4466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.0890;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.213;QD=23.76;ReadPosRankSum=1.714;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4466,495,0 chrXIII 764917 . G A 5604.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=25.47;SB=-2.858e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5604,598,0 chrXIII 765034 . A G 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=171;Dels=0.00;FS=3.018;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-1.487;QD=22.40;ReadPosRankSum=2.421;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3830,414,0 chrXIII 765055 . T G 3329.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=19.47;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3329,372,0 chrXIII 765059 . T G 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=6.309;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;MQRankSum=-0.792;QD=19.54;ReadPosRankSum=2.421;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3302,357,0 chrXIII 765109 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=17.94;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3498,367,0 chrXIII 765121 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=18.14;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3262,360,0 chrXIII 765291 . G A 3540.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.0781;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.99;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3540,378,0 chrXIII 765334 . A G 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=158;Dels=0.00;FS=7.249;HaplotypeScore=17.5412;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-0.874;QD=23.75;ReadPosRankSum=2.371;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3753,414,0 chrXIII 765393 . C T 4079.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.87;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4079,438,0 chrXIII 765451 . C T 3554.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7663;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=25.57;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3554,372,0 chrXIII 765542 . T C 4320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=182;Dels=0.00;FS=3.688;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.982;QD=23.74;ReadPosRankSum=1.713;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:4320,477,0 chrXIII 765648 . G T 4232.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.60;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4232,453,0 chrXIII 765682 . T C 4689.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.35;SB=-2.437e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4689,513,0 chrXIII 765773 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=23.47;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2943,309,0 chrXIII 765790 . G A 2951 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=23.80;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2984,318,0 chrXIII 765853 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.77;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3279,363,0 chrXIII 765900 . G T 3669.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0823;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.96;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3669,387,0 chrXIII 766029 . A G 2710 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.5982;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.85;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2743,297,0 chrXIII 766042 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=22.89;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2780,288,0 chrXIII 766215 . T C 3029 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.30;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3062,333,0 chrXIII 766244 . A T 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=3.497;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-0.210;QD=21.45;ReadPosRankSum=1.680;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2865,306,0 chrXIII 766245 . T C 2769 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.98;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2802,309,0 chrXIII 766444 . T G 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=137;Dels=0.00;FS=6.862;HaplotypeScore=8.4438;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=0.262;QD=22.69;ReadPosRankSum=2.377;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3142,357,0 chrXIII 766566 . T C 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=3.337;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.477;QD=22.87;ReadPosRankSum=1.682;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3212,354,0 chrXIII 766609 . C T 3014 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.36;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3047,333,0 chrXIII 766746 . A T 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=114;Dels=0.00;FS=2.581;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.593;QD=21.60;ReadPosRankSum=2.939;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2495,267,0 chrXIII 766771 . T C 2548 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.23;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2581,279,0 chrXIII 766803 . C T 2663 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.38;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2696,285,0 chrXIII 766878 . G A 2916 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=23.33;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2949,315,0 chrXIII 766972 . A T 2838 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=24.68;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2871,303,0 chrXIII 767001 . G A 2609 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.16;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2642,285,0 chrXIII 767075 . T C 2984 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.01;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3017,330,0 chrXIII 767080 . C T 3023 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.56;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3056,333,0 chrXIII 767539 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=21.76;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3308,354,0 chrXIII 767542 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.562;QD=20.96;ReadPosRankSum=1.687;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3261,357,0 chrXIII 767901 . G A 2859 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.30;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2892,303,0 chrXIII 768019 . A G 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=3.112;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=0.765;QD=22.77;ReadPosRankSum=1.705;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2970,330,0 chrXIII 768108 . T C 2366 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=21.32;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2399,261,0 chrXIII 768110 . A G 2265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=106;Dels=0.00;FS=9.046;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=-0.240;QD=21.37;ReadPosRankSum=3.225;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:4,102:106:99:2298,255,0 chrXIII 768232 . A G 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=3.179;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;MQRankSum=0.145;QD=18.20;ReadPosRankSum=1.679;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:1,130:136:99:2508,276,0 chrXIII 768268 . A T 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.01;FS=3.461;HaplotypeScore=30.7148;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=-1.561;QD=18.85;ReadPosRankSum=1.708;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2747,297,0 chrXIII 768296 . T A 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=3.168;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;MQRankSum=-0.340;QD=20.42;ReadPosRankSum=1.639;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2320,249,0 chrXIII 768312 . T A 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=82.1532;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;MQRankSum=1.115;QD=21.70;ReadPosRankSum=1.561;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2225,237,0 chrXIII 768344 . A G 2103 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=21.91;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2136,243,0 chrXIII 768463 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.66;MQ0=0;QD=24.06;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3344,354,0 chrXIII 768494 . G A 2322 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=0;QD=22.54;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2355,252,0 chrXIII 768514 . C T 1952 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.72;MQ0=0;QD=22.70;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1985,213,0 chrXIII 768690 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.28;MQ0=33;QD=0.45;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:33,7:40:6:49,6,0 chrXIII 768705 . A G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.55;MQ0=36;QD=0.39;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:36,7:43:6:48,6,0 chrXIII 768707 . A G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.43;MQ0=37;QD=0.38;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:37,7:44:6:48,6,0 chrXIII 768708 . T A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.43;MQ0=37;QD=0.45;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:37,7:44:6:51,6,0 chrXIII 768709 . T C 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.31;MQ0=38;QD=0.40;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:38,7:45:6:49,6,0 chrXIII 768904 . C T 66.51 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.19;MQ0=0;QD=4.75;SB=-2.852e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:99,12,0 chrXIII 768939 . C T 682 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.89;MQ0=0;QD=16.63;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:715,81,0 chrXIII 768951 . G A 856 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=33.54;MQ0=0;QD=18.61;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:889,96,0 chrXIII 768968 . T G 1041 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.60;MQ0=0;QD=17.64;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1074,123,0 chrXIII 768969 . A G 1104 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.72;MQ0=0;QD=17.81;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1137,129,0 chrXIII 769148 . G A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=32.32;MQ0=0;QD=0.65;SB=-2.088e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:6:56,6,0 chrXIII 769211 . C T 2315 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;QD=17.28;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2348,255,0 chrXIII 769249 . G T 2190 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=374.0387;MLEAC=2;MLEAF=1.00;MQ=38.65;MQ0=0;QD=15.76;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2223,243,0 chrXIII 769274 . T C 1499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.20;MQ0=0;MQRankSum=-1.945;QD=9.93;ReadPosRankSum=2.238;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:2,149:151:99:1532,171,0 chrXIII 769286 . G A 1864 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=37.18;MQ0=0;QD=12.03;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,153:155:99:1897,201,0 chrXIII 769315 . G A 2377 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;QD=16.17;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2410,264,0 chrXIII 769401 . G A 3618.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=22.90;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3618,387,0 chrXIII 769403 . G A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=21.17;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3408,378,0 chrXIII 769428 . G A 3939.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=41.95;MQ0=0;QD=20.95;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3939,417,0 chrXIII 769442 . T G 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=190;Dels=0.00;FS=3.945;HaplotypeScore=6.8697;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;MQRankSum=-1.732;QD=17.82;ReadPosRankSum=1.713;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,185:190:99:3386,381,0 chrXIII 769582 . C T 5555.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=24.3989;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=24.69;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5555,595,0 chrXIII 769643 . G A 4129.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.6988;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=21.85;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4129,438,0 chrXIII 769653 . A T 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=3.300;HaplotypeScore=6.0428;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=1.583;QD=21.75;ReadPosRankSum=1.676;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4046,415,0 chrXIII 769700 . T C 4593.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=210;Dels=0.00;FS=3.310;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;MQRankSum=0.907;QD=21.87;ReadPosRankSum=1.716;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4593,519,0 chrXIII 769741 . C A 4980.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=14.1810;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=22.23;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4980,540,0 chrXIII 769778 . T A 4462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=208;Dels=0.00;FS=4.260;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=-0.400;QD=21.45;ReadPosRankSum=1.682;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4462,486,0 chrXIII 769779 . T A 4615.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=22.40;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4615,487,0 chrXIII 769791 . C T 4523.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=21.64;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4523,481,0 chrXIII 769839 . G A 3964.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=21.54;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3964,420,0 chrXIII 769952 . T C 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=3.277;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=0.021;QD=19.37;ReadPosRankSum=1.650;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3274,366,0 chrXIII 769965 . T C 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.9646;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;MQRankSum=-0.797;QD=18.71;ReadPosRankSum=1.647;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3083,339,0 chrXIII 769971 . A G 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=168;Dels=0.00;FS=5.993;HaplotypeScore=8.6150;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;MQRankSum=-0.066;QD=18.17;ReadPosRankSum=2.934;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:3085,345,0 chrXIII 770091 . A T 3775.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=47.14;MQ0=0;QD=22.60;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3775,405,0 chrXIII 770092 . A G 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;MQRankSum=-1.089;QD=21.49;ReadPosRankSum=1.691;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:1,166:170:99:3654,402,0 chrXIII 770166 . C T 3502.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=23.04;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3502,378,0 chrXIII 770207 . T C 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=149;Dels=0.00;FS=9.064;HaplotypeScore=11.3436;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-0.910;QD=21.18;ReadPosRankSum=3.400;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:4,145:149:99:3189,354,0 chrXIII 770272 . C T 2434 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.2742;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=0;QD=17.77;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2467,258,0 chrXIII 770277 . T A 2366 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.6884;MLEAC=2;MLEAF=1.00;MQ=36.58;MQ0=0;QD=17.92;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2399,255,0 chrXIII 770286 . G T 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.336;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.0776;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=0;MQRankSum=0.030;QD=13.87;ReadPosRankSum=4.677;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:9,132:142:99:2003,158,0 chrXIII 770320 . T C 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=9.616;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;MQRankSum=-1.056;QD=18.93;ReadPosRankSum=2.409;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2324,255,0 chrXIII 770337 . T C 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=124;Dels=0.00;FS=9.266;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=-0.982;QD=19.85;ReadPosRankSum=2.390;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2494,273,0 chrXIII 770390 . G A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.65;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3287,348,0 chrXIII 770511 . C T 1933 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=21.48;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1966,210,0 chrXIII 770533 . G A 1740 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=18.51;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1773,186,0 chrXIII 770543 . G A 1675 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9377;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=17.63;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1708,180,0 chrXIII 770694 . A G 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=174;Dels=0.00;FS=11.576;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.916;QD=23.05;ReadPosRankSum=2.407;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:4011,456,0 chrXIII 770744 . T C 4536.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.20;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4536,504,0 chrXIII 771046 . T C 3935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.994;QD=21.50;ReadPosRankSum=1.675;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3935,432,0 chrXIII 771058 . G A 4388.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=23.09;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4388,463,0 chrXIII 771109 . G A 4599.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.59;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4599,484,0 chrXIII 771220 . T C 5308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=217;Dels=0.00;FS=2.795;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=1.205;QD=24.46;ReadPosRankSum=2.404;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:5308,585,0 chrXIII 771259 . T C 5870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=15.9428;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-1.051;QD=24.36;ReadPosRankSum=1.645;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:1,238:241:99:5870,639,0 chrXIII 771391 . G A 5033.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.1085;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=23.63;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5033,526,0 chrXIII 771409 . A G 4732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=5.9973;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.881;QD=21.03;ReadPosRankSum=1.717;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:1,223:225:99:4732,519,0 chrXIII 771430 . G T 4743.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.44;SB=-2.821e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:4743,508,0 chrXIII 771556 . A G 5451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=218;Dels=0.00;FS=3.472;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.270;QD=25.00;ReadPosRankSum=1.716;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:5451,603,0 chrXIII 771631 . T C 4692.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=24.06;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4692,528,0 chrXIII 771664 . C T 4238.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.3650;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.81;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4238,445,0 chrXIII 771742 . T C 4738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=3.722;HaplotypeScore=9.4186;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.360;QD=23.11;ReadPosRankSum=1.715;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4738,522,0 chrXIII 771775 . T C 4001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=3.991;HaplotypeScore=7.5416;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.805;QD=21.86;ReadPosRankSum=1.656;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4001,429,0 chrXIII 771796 . A G 3599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.091;QD=20.80;ReadPosRankSum=1.692;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3599,393,0 chrXIII 771982 . G A 3427.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=23.00;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3427,372,0 chrXIII 772120 . A G 3047 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.44;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3080,342,0 chrXIII 772204 . A G 2603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=151;Dels=0.00;FS=6.103;HaplotypeScore=4.3160;MLEAC=2;MLEAF=1.00;MQ=37.37;MQ0=0;MQRankSum=-2.180;QD=17.24;ReadPosRankSum=2.954;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:2636,294,0 chrXIII 772205 . C T 2774 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.6794;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;QD=18.74;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2807,294,0 chrXIII 772216 . G A 2540 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.2031;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=0;QD=17.40;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2573,273,0 chrXIII 772219 . T C 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=152;Dels=0.00;FS=9.164;HaplotypeScore=5.0854;MLEAC=2;MLEAF=1.00;MQ=34.80;MQ0=0;MQRankSum=-2.722;QD=15.65;ReadPosRankSum=3.401;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:4,148:152:99:2412,264,0 chrXIII 772241 . C T 2409 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;QD=13.84;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2442,258,0 chrXIII 772252 . A G 2293 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.59;MQ0=0;QD=12.53;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:2326,261,0 chrXIII 772261 . A G 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=181;Dels=0.00;FS=3.182;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.04;MQ0=0;MQRankSum=0.392;QD=12.45;ReadPosRankSum=1.694;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:2286,252,0 chrXIII 772282 . A G 2274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=168;Dels=0.00;FS=3.393;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;MQRankSum=0.793;QD=13.54;ReadPosRankSum=1.690;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:2307,252,0 chrXIII 772333 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.60;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2567,273,0 chrXIII 772440 . T C 4585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=198;Dels=0.00;FS=3.329;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=39.57;MQ0=0;MQRankSum=0.577;QD=23.16;ReadPosRankSum=1.680;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4585,492,0 chrXIII 772453 . G A 4128.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.06;MQ0=0;QD=23.06;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4128,447,0 chrXIII 772562 . G A 1911 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=17.69;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1944,213,0 chrXIII 772565 . A G 1991 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=17.78;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2024,228,0 chrXIII 772578 . A G 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;MQRankSum=0.585;QD=19.34;ReadPosRankSum=1.708;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2857,318,0 chrXIII 772660 . T G 672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-5.603;DP=106;Dels=0.00;FS=16.304;HaplotypeScore=9.5875;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=0;MQRankSum=0.366;QD=6.34;ReadPosRankSum=6.150;SB=-6.658e+02 GT:AD:DP:GQ:PL 1/1:33,71:106:64:705,64,0 chrXIII 772662 . G C 702 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=6.4328;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;QD=6.69;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:4,69:104:87:735,87,0 chrXIII 772718 . A G 1533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=73;Dels=0.00;FS=4.895;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.805;QD=21.00;ReadPosRankSum=1.683;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,70:73:99:1566,171,0 chrXIII 772763 . T C 2807 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=25.52;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2840,309,0 chrXIII 772812 . T A 2324 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=23.47;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2357,258,0 chrXIII 772883 . C T 3449.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.1440;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.64;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3449,366,0 chrXIII 773055 . A G 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.4429;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.793;QD=22.26;ReadPosRankSum=-0.021;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3829,409,0 chrXIII 773109 . C T 5171.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=15.8622;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.50;SB=-2.709e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5171,550,0 chrXIII 773252 . C T 3903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.460;DP=180;Dels=0.00;FS=3.473;HaplotypeScore=5.5310;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.448;QD=21.68;ReadPosRankSum=-1.362;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:3903,390,0 chrXIII 773268 . C T 4035.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.35;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4035,432,0 chrXIII 773415 . C T 4654.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.4548;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.62;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4654,498,0 chrXIII 773437 . G A 4360.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.47;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4360,468,0 chrXIII 773634 . A G 5313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.687;DP=229;Dels=0.00;FS=9.204;HaplotypeScore=15.0669;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=2.088;QD=23.20;ReadPosRankSum=2.969;SB=-2.844e+03 GT:AD:DP:GQ:PL 1/1:3,225:229:99:5313,585,0 chrXIII 773689 . G A 5687.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=18.4754;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.50;SB=-2.984e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:5687,595,0 chrXIII 774011 . C T 1701 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=21.6763;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=11.05;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,148:154:99:1734,189,0 chrXIII 774331 . T C 5311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=249;Dels=0.00;FS=3.651;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.978;QD=21.33;ReadPosRankSum=1.718;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:1,247:249:99:5311,582,0 chrXIII 774570 . T C 2895 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.27;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2928,318,0 chrXIII 774688 . T A 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;MQRankSum=0.610;QD=19.11;ReadPosRankSum=1.666;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2040,222,0 chrXIII 774694 . C T 1853 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;QD=17.48;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1886,204,0 chrXIII 774716 . G A 1676 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=141.1102;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=17.10;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1709,180,0 chrXIII 774827 . T A 2872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.701;QD=25.64;ReadPosRankSum=1.670;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2905,306,0 chrXIII 775031 . T C 1777 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.15;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1810,198,0 chrXIII 775426 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.50;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:3253,351,0 chrXIII 775628 . A T 7061.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=14.0895;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=26.65;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:7061,742,0 chrXIII 775737 . T C 3967.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=17.8377;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.80;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3967,432,0 chrXIII 775955 . A G 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.152;DP=165;Dels=0.00;FS=7.610;HaplotypeScore=14.1348;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=2.301;QD=22.96;ReadPosRankSum=0.707;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3788,408,0 chrXIII 776036 . A G 4447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=195;Dels=0.00;FS=5.002;HaplotypeScore=12.3283;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.763;QD=22.81;ReadPosRankSum=1.660;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4447,504,0 chrXIII 776237 . A G 4799.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=5.3950;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.42;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4799,525,0 chrXIII 776252 . C T 4512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.489;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.2673;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.800;QD=19.88;ReadPosRankSum=-1.313;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4512,471,0 chrXIII 776333 . A G 4040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.186;QD=21.72;ReadPosRankSum=1.713;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4040,447,0 chrXIII 776487 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.8636;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.67;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3051,336,0 chrXIII 776870 . C T 4289.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.94;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4289,459,0 chrXIII 776896 . C T 3626.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.8970;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.03;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3626,402,0 chrXIII 776909 . G A 3534.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=19.74;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3534,381,0 chrXIII 777163 . T C 2797 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.19;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2830,306,0 chrXIII 777267 . G A 3221.02 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=12.4539;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.91;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3254,348,0 chrXIII 777456 . A G 4061.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.47;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4061,447,0 chrXIII 777532 . C G 4809.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.3570;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=23.46;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4809,528,0 chrXIII 777554 . T C 4819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.434;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.7650;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-1.450;QD=21.71;ReadPosRankSum=1.325;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:1,220:222:99:4819,546,0 chrXIII 777582 . C T 4525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.887;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-0.307;QD=21.34;ReadPosRankSum=-0.588;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:1,209:212:99:4525,498,0 chrXIII 777737 . T C 4292.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.97;MQ0=0;QD=23.08;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4292,483,0 chrXIII 777909 . T C 2645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=150;Dels=0.00;FS=4.460;HaplotypeScore=6.8077;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=0;MQRankSum=-0.889;QD=17.63;ReadPosRankSum=1.709;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,147:150:99:2678,294,0 chrXIII 777915 . T A 2506 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=117.5231;MLEAC=2;MLEAF=1.00;MQ=36.67;MQ0=0;QD=17.28;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2539,270,0 chrXIII 777953 . G A 1887 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.06;MQ0=0;QD=14.40;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1920,198,0 chrXIII 777964 . T C 1771 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=40.87;MQ0=0;QD=13.84;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1804,198,0 chrXIII 777974 . C T 1803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.437;DP=129;Dels=0.00;FS=3.044;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;MQRankSum=-0.255;QD=13.98;ReadPosRankSum=1.705;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:1836,173,0 chrXIII 778015 . T C 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=3.886;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.256;QD=22.82;ReadPosRankSum=1.672;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2657,294,0 chrXIII 778123 . A C 2454 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=20.28;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2487,276,0 chrXIII 778144 . A G 3209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=142;Dels=0.00;FS=7.380;HaplotypeScore=13.0643;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;MQRankSum=-0.234;QD=22.60;ReadPosRankSum=2.415;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3242,360,0 chrXIII 778328 . G C 3491.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.5048;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.82;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3491,387,0 chrXIII 778647 . A G 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.465;QD=21.92;ReadPosRankSum=2.388;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2663,294,0 chrXIII 779355 . G C 2371 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=19.92;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2404,261,0 chrXIII 780034 . T A 3607.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=23.58;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3607,390,0 chrXIII 780094 . G C 2378 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=18.43;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2411,270,0 chrXIII 780100 . G A 2549 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=19.02;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2582,273,0 chrXIII 780241 . C T 2777 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.34;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2810,294,0 chrXIII 780339 . T A 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=3.010;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=1.100;QD=21.54;ReadPosRankSum=1.705;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2769,306,0 chrXIII 780517 . T C 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.9084;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.766;QD=22.65;ReadPosRankSum=1.685;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3330,363,0 chrXIII 780712 . A G 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.000;QD=22.28;ReadPosRankSum=1.683;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3197,357,0 chrXIII 780946 . G T 2967 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,126:130:99:3000,318,0 chrXIII 781016 . C G 3290.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.19;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3290,357,0 chrXIII 781048 . A G 2616 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.44;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2649,297,0 chrXIII 781051 . C T 2687 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.77;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2720,285,0 chrXIII 781324 . G A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.78;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3417,369,0 chrXIII 781351 . C G 3848.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.74;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3848,435,0 chrXIII 781447 . A G 4024.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=173;Dels=0.00;FS=6.097;HaplotypeScore=14.3444;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.433;QD=23.26;ReadPosRankSum=2.407;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4024,447,0 chrXIII 782228 . G A 2879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.209;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=8.7494;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=1.015;QD=24.61;ReadPosRankSum=1.135;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2912,284,0 chrXIII 782267 . A G 2250 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=21.84;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2283,252,0 chrXIII 782556 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.45;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2625,288,0 chrXIII 782722 . G A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9289;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.83;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3487,366,0 chrXIII 783184 . C T 4772.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.5010;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.51;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4772,505,0 chrXIII 783214 . T C 4716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=204;Dels=0.00;FS=2.365;HaplotypeScore=16.3011;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.035;QD=23.12;ReadPosRankSum=2.599;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:3,200:204:99:4716,519,0 chrXIII 783985 . T C 4205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=3.334;HaplotypeScore=13.7550;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.254;QD=22.85;ReadPosRankSum=1.675;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:1,180:184:99:4205,462,0 chrXIII 784138 . G A 3469.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.68;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3469,375,0 chrXIII 784210 . T C 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.7548;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-1.566;QD=24.60;ReadPosRankSum=1.661;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3592,396,0 chrXIII 784313 . G A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=23.53;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3257,339,0 chrXIII 784323 . C G 2977 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=6.4001;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.53;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3010,336,0 chrXIII 784466 . G A 2722 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=21.78;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2755,294,0 chrXIII 784510 . A T 2637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=3.397;HaplotypeScore=7.8094;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.712;QD=20.44;ReadPosRankSum=1.705;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2670,297,0 chrXIII 784561 . C T 2725 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.15;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2758,294,0 chrXIII 784723 . C T 3057 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.81;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3090,330,0 chrXIII 784796 . G C 2729 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.32;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2762,300,0 chrXIII 785216 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3116,324,0 chrXIII 785292 . C G 2485 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.44;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2518,273,0 chrXIII 785416 . G A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.52;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3496,369,0 chrXIII 785575 . T C 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=152;Dels=0.00;FS=3.016;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.090;QD=22.14;ReadPosRankSum=2.401;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3365,378,0 chrXIII 785591 . G A 3588.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.92;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3588,378,0 chrXIII 785941 . G A 4626.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.2735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.84;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4626,487,0 chrXIII 785980 . G A 3879.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3879,408,0 chrXIII 786415 . T A 3991.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.9880;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.34;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3991,429,0 chrXIII 786708 . C T 2760 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2793,294,0 chrXIII 787006 . G A 2858 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.75;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2891,300,0 chrXIII 787310 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.98;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2745,294,0 chrXIII 787876 . C G 3006 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3039,339,0 chrXIII 788209 . G A 2689 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.22;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2722,297,0 chrXIII 788573 . G T 2621 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.16;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2654,279,0 chrXIII 788581 . T C 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;DP=137;Dels=0.00;FS=6.092;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.652;QD=17.83;ReadPosRankSum=2.904;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:3,133:137:99:2476,273,0 chrXIII 788656 . T C 2295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.577;QD=21.06;ReadPosRankSum=1.700;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2328,255,0 chrXIII 788743 . A G 3100 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.22;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3133,342,0 chrXIII 788848 . G A 2206 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=22.74;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2239,240,0 chrXIII 788915 . A G 1875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.256;QD=23.15;ReadPosRankSum=1.689;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1908,210,0 chrXIII 789063 . C T 2016 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=24.59;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2049,222,0 chrXIII 789071 . G T 1755 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=24.72;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1788,192,0 chrXIII 789101 . G A 684 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.54;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:75:717,75,0 chrXIII 789247 . T A 1446 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=24.51;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1479,156,0 chrXIII 789267 . G T 905 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.62;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:99:938,102,0 chrXIII 789347 . G A 1632 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1665,177,0 chrXIII 789843 . G A 3688.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.57;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3688,399,0 chrXIII 790001 . G A 2303 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.35;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2336,258,0 chrXIII 790067 . G A 3081 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.7933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3114,339,0 chrXIII 790319 . A G 4063.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=17.5956;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.62;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:4063,444,0 chrXIII 790520 . A G 4564.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=22.93;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4564,510,0 chrXIII 790550 . T C 4322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=230;Dels=0.00;FS=6.669;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=1.073;QD=18.79;ReadPosRankSum=2.428;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:2,228:230:99:4322,489,0 chrXIII 790559 . G A 4808.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=12.9253;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.39;SB=-3.006e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:4808,514,0 chrXIII 790664 . A T 6182.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=250;Dels=0.00;FS=3.018;HaplotypeScore=16.1522;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.173;QD=24.73;ReadPosRankSum=2.430;SB=-3.202e+03 GT:AD:DP:GQ:PL 1/1:2,248:250:99:6182,661,0 chrXIII 790712 . G A 4699.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.5605;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=24.60;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4699,493,0 chrXIII 790727 . C T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=23.91;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4375,460,0 chrXIII 790832 . C T 3763.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.3565;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=18.63;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:3763,408,0 chrXIII 790870 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.55;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3576,396,0 chrXIII 791239 . T C 2636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.371;QD=22.72;ReadPosRankSum=1.702;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2669,297,0 chrXIII 791636 . T C 3807.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=162;Dels=0.00;FS=5.610;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.913;QD=23.50;ReadPosRankSum=2.870;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:3807,420,0 chrXIII 791894 . A G 4210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.117;QD=23.39;ReadPosRankSum=1.693;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:4210,462,0 chrXIII 791978 . C T 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=165;Dels=0.00;FS=3.661;HaplotypeScore=17.3715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.395;QD=23.04;ReadPosRankSum=0.943;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,159:165:99:3802,387,0 chrXIII 792077 . C T 2771 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.65;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2804,294,0 chrXIII 792254 . A G 2616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=114;Dels=0.00;FS=3.590;HaplotypeScore=15.5982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.866;QD=22.95;ReadPosRankSum=1.701;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2649,288,0 chrXIII 793043 . G A 4343.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=15.7969;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.74;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4343,477,0 chrXIII 793076 . T G 4526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.9747;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.755;QD=22.19;ReadPosRankSum=1.612;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4526,516,0 chrXIII 793132 . C T 5349.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5349,579,0 chrXIII 793604 . G A 6098.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=23.45;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,255:260:99:6098,637,0 chrXIII 793617 . C T 5411.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=12.6583;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.73;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,246:249:99:5411,582,0 chrXIII 793668 . G A 5400.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.59;SB=-3.159e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5400,588,0 chrXIII 793734 . A G 6245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=303;Dels=0.00;FS=3.014;HaplotypeScore=20.6566;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-1.260;QD=20.61;ReadPosRankSum=2.392;SB=-3.769e+03 GT:AD:DP:GQ:PL 1/1:2,297:303:99:6245,687,0 chrXIII 793752 . T C 6745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=330;Dels=0.00;FS=6.168;HaplotypeScore=17.1388;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=1.392;QD=20.44;ReadPosRankSum=2.389;SB=-4.116e+03 GT:AD:DP:GQ:PL 1/1:2,325:330:99:6745,736,0 chrXIII 794088 . T C 5156.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=217;Dels=0.00;FS=2.862;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.465;QD=23.76;ReadPosRankSum=2.416;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:2,215:217:99:5156,564,0 chrXIII 794191 . C A 5683.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.82;SB=-3.098e+03 GT:AD:DP:GQ:PL 1/1:0,247:249:99:5683,607,0 chrXIII 794202 . A G 5116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=239;Dels=0.00;FS=7.048;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=0.036;QD=21.41;ReadPosRankSum=2.408;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:2,236:239:99:5116,558,0 chrXIII 794401 . C T 5041.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=13.2397;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.02;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5041,535,0 chrXIII 794751 . T A 3918.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=4.890;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=0.272;QD=21.18;ReadPosRankSum=1.713;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3918,423,0 chrXIII 794755 . G T 4029.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.21;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4029,427,0 chrXIII 794820 . T A 2644 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.03;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2677,291,0 chrXIII 794978 . T C 2138 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.04;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2171,243,0 chrXIII 795009 . T A 1990 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=23.41;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2023,219,0 chrXIII 795186 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.7134;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.50;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3553,384,0 chrXIII 795946 . T C 5230.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.4088;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=1.055;QD=23.77;ReadPosRankSum=2.416;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:5230,570,0 chrXIII 796038 . T C 4495.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=205;Dels=0.00;FS=6.986;HaplotypeScore=11.2826;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-1.012;QD=21.93;ReadPosRankSum=2.414;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4495,495,0 chrXIII 796069 . T C 4839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=230;Dels=0.00;FS=3.555;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=-0.522;QD=21.04;ReadPosRankSum=1.702;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:1,228:230:99:4839,531,0 chrXIII 796089 . C G 5131.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=6.7660;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.69;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:5131,567,0 chrXIII 796280 . T C 4165.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=178;Dels=0.00;FS=7.971;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.534;QD=23.40;ReadPosRankSum=2.408;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4165,456,0 chrXIII 796431 . G A 2668 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=22.23;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2701,288,0 chrXIII 796432 . T C 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.549;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-0.693;QD=21.89;ReadPosRankSum=1.646;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2682,288,0 chrXIII 796580 . C T 3303.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=25.60;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3303,351,0 chrXIII 796630 . A G 2851 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=23.37;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2884,312,0 chrXIII 796648 . T C 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;MQRankSum=0.160;QD=22.46;ReadPosRankSum=1.674;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2728,300,0 chrXIII 796811 . G T 3965.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.7316;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=21.91;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3965,426,0 chrXIII 796868 . A T 3319.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=19.76;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3319,360,0 chrXIII 796877 . A T 2610 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.764;DP=157;Dels=0.00;FS=1.877;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;MQRankSum=1.215;QD=16.62;ReadPosRankSum=3.614;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:5,152:157:99:2643,300,0 chrXIII 796879 . T C 2579 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.346;DP=160;Dels=0.00;FS=10.872;HaplotypeScore=4.7038;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;MQRankSum=0.912;QD=16.12;ReadPosRankSum=3.552;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:6,154:160:99:2612,300,0 chrXIII 796885 . A G 2764 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6960;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=0.975;QD=17.72;ReadPosRankSum=2.101;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:2797,312,0 chrXIII 796957 . T C 4091.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.85;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4091,453,0 chrXIII 796998 . A G 4761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=215;Dels=0.00;FS=3.238;HaplotypeScore=9.4866;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-0.443;QD=22.14;ReadPosRankSum=1.684;SB=-2.582e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4761,519,0 chrXIII 797041 . A T 4727.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=20.73;SB=-3.051e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4727,496,0 chrXIII 797048 . T C 4491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=0.658;QD=19.61;ReadPosRankSum=1.702;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:4491,489,0 chrXIII 797146 . T C 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=3.277;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=1.258;QD=23.24;ReadPosRankSum=1.711;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3950,441,0 chrXIII 797223 . A C 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.600;QD=20.71;ReadPosRankSum=1.709;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3201,348,0 chrXIII 797362 . T C 2573 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=20.42;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2606,285,0 chrXIII 797379 . A G 2439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;MQRankSum=-0.873;QD=20.50;ReadPosRankSum=1.673;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2472,270,0 chrXIII 797401 . G A 2124 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=19.31;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2157,234,0 chrXIII 797456 . T G 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.4061;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;MQRankSum=-0.486;QD=16.88;ReadPosRankSum=2.311;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2126,237,0 chrXIII 797457 . C T 2235 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=17.33;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2268,240,0 chrXIII 797563 . A G 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=141;Dels=0.00;FS=12.657;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.279;QD=21.23;ReadPosRankSum=2.822;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:3026,345,0 chrXIII 797587 . A G 3081 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.85;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3114,348,0 chrXIII 797644 . A G 3477.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.53;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3477,393,0 chrXIII 797666 . T C 3792.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.2102;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=19.55;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3792,420,0 chrXIII 798060 . G C 3544.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=19.80;SB=-2.295e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3544,384,0 chrXIII 798063 . T C 3385.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=19.45;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3385,366,0 chrXIII 798090 . T C 2517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=158;Dels=0.00;FS=4.505;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=1.052;QD=15.93;ReadPosRankSum=1.688;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2550,279,0 chrXIII 798298 . A G 2010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.485;DP=96;Dels=0.00;FS=6.067;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.400;QD=20.94;ReadPosRankSum=2.927;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:3,93:96:99:2043,222,0 chrXIII 798332 . C G 1634 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.22;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1667,183,0 chrXIII 798333 . T C 1647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=88;Dels=0.00;FS=3.062;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=1.676;QD=18.72;ReadPosRankSum=2.221;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:2,84:88:99:1680,183,0 chrXIII 798447 . T A 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.6954;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;MQRankSum=-0.779;QD=20.51;ReadPosRankSum=1.700;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2269,249,0 chrXIII 798450 . C G 2247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.278;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.6954;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;MQRankSum=0.124;QD=20.06;ReadPosRankSum=1.701;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2280,225,0 chrXIII 798485 . T G 2444 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=19.71;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2477,270,0 chrXIII 798592 . T G 2315 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=19.13;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2348,261,0 chrXIII 798593 . T G 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=126;Dels=0.00;FS=6.105;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-0.798;QD=18.83;ReadPosRankSum=2.879;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:3,122:126:99:2405,261,0 chrXIII 798732 . A G 1896 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=16.93;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1929,213,0 chrXIII 798739 . C A 1796 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=15.89;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1829,204,0 chrXIII 798826 . C T 2223 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=17.78;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2256,240,0 chrXIII 798889 . C G 2995 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.86;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:3028,342,0 chrXIII 799519 . C T 3935.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.2250;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.75;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3935,423,0 chrXIII 799605 . T C 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.514;QD=22.36;ReadPosRankSum=1.690;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,164:168:99:3757,417,0 chrXIII 799711 . A G 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.113;QD=22.31;ReadPosRankSum=1.670;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3770,417,0 chrXIII 799763 . A C 3774.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.46;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3774,411,0 chrXIII 799911 . C T 3181 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.10;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3214,333,0 chrXIII 800212 . T C 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.524;QD=23.66;ReadPosRankSum=1.709;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3573,387,0 chrXIII 800233 . T C 3678.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.20;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3678,402,0 chrXIII 800264 . G A 3170 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.83;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3203,339,0 chrXIII 800350 . G A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=21.99;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3453,369,0 chrXIII 800368 . T C 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=184;Dels=0.00;FS=3.026;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-0.034;QD=19.95;ReadPosRankSum=2.423;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:2,180:184:99:3670,408,0 chrXIII 800425 . T C 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.5577;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.164;QD=20.20;ReadPosRankSum=1.694;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:3716,405,0 chrXIII 800554 . C T 3077 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=21.08;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3110,333,0 chrXIII 800561 . A G 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=0.139;QD=20.99;ReadPosRankSum=1.709;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3202,354,0 chrXIII 800671 . T C 3396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.8451;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.115;QD=22.49;ReadPosRankSum=1.709;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3396,375,0 chrXIII 800698 . G A 2455 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=18.19;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2488,261,0 chrXIII 800705 . A G 2424 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.6864;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=17.69;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2457,276,0 chrXIII 800812 . T C 3122 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;MQRankSum=1.557;QD=19.64;ReadPosRankSum=1.710;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3155,351,0 chrXIII 800816 . A C 3012 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=19.69;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3045,336,0 chrXIII 800817 . T C 3033 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;MQRankSum=-0.623;QD=19.82;ReadPosRankSum=1.687;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3066,339,0 chrXIII 800848 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=16.30;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2870,318,0 chrXIII 800866 . C A 3021 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.7195;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;QD=17.07;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3054,333,0 chrXIII 800900 . T G 3967.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=21.21;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3967,435,0 chrXIII 800968 . G A 3707.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.5742;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=23.17;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3707,390,0 chrXIII 800977 . A G 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.636;DP=165;Dels=0.00;FS=8.027;HaplotypeScore=4.8970;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=1.792;QD=20.95;ReadPosRankSum=3.788;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:5,160:165:99:3456,378,0 chrXIII 801034 . T C 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=154;Dels=0.00;FS=3.651;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;MQRankSum=-1.347;QD=19.96;ReadPosRankSum=1.687;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3107,354,0 chrXIII 801050 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=22.01;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3610,393,0 chrXIII 801144 . T A 4445.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.3107;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.56;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4445,495,0 chrXIII 801226 . G A 2386 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.779;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;MQRankSum=0.000;QD=16.12;ReadPosRankSum=1.451;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2419,270,0 chrXIII 801227 . A G 2342 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.057;DP=148;Dels=0.00;FS=5.052;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;MQRankSum=-0.372;QD=15.82;ReadPosRankSum=3.293;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:4,144:148:99:2375,264,0 chrXIII 801232 . T C 2356 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=15.50;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2389,267,0 chrXIII 801254 . C T 2498 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=15.81;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2531,264,0 chrXIII 801280 . A G 2067 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;MQRankSum=-1.708;QD=14.16;ReadPosRankSum=1.661;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2100,234,0 chrXIII 801282 . A C 2019 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=13.92;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2052,228,0 chrXIII 801283 . T A 2079 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=4.513;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;MQRankSum=0.106;QD=14.05;ReadPosRankSum=1.685;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2112,231,0 chrXIII 801649 . C T 2606 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.27;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2639,282,0 chrXIII 801794 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=24.83;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3262,339,0 chrXIII 801823 . C A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.68;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3292,357,0 chrXIII 801852 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=19.89;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2659,297,0 chrXIII 801876 . C T 2644 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.34;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2677,291,0 chrXIII 801921 . C T 2196 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.74;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2229,234,0 chrXIII 801957 . C T 2156 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.43;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2189,231,0 chrXIII 802071 . G A 3874.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=26.00;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3874,417,0 chrXIII 802119 . C T 4120.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.7840;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=24.97;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4120,438,0 chrXIII 802161 . C T 3781.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=23.48;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3781,399,0 chrXIII 802176 . T C 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.798;DP=166;Dels=0.00;FS=7.925;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=1.183;QD=18.60;ReadPosRankSum=3.741;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:5,160:166:99:3120,336,0 chrXIII 802188 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=4.269;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=0.521;QD=20.13;ReadPosRankSum=1.711;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3302,360,0 chrXIII 802329 . A C 3803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.048;QD=20.78;ReadPosRankSum=1.713;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:3803,432,0 chrXIII 802356 . C T 4140.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.50;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4140,450,0 chrXIII 802432 . A G 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=3.027;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.413;QD=24.50;ReadPosRankSum=2.397;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:3455,381,0 chrXIII 802461 . A G 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=3.412;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.190;QD=22.62;ReadPosRankSum=1.709;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3325,369,0 chrXIII 802543 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-0.707;QD=21.93;ReadPosRankSum=1.687;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3355,363,0 chrXIII 802566 . C A 3329.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=22.05;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3329,345,0 chrXIII 802644 . A G 3375.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=23.77;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3375,369,0 chrXIII 802701 . T A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=23.55;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3321,366,0 chrXIII 802822 . T G 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;MQRankSum=-0.272;QD=20.19;ReadPosRankSum=1.689;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3243,366,0 chrXIII 802825 . G A 3166 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=20.69;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3199,339,0 chrXIII 802854 . T C 2597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=155;Dels=0.00;FS=2.652;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;MQRankSum=-1.245;QD=16.75;ReadPosRankSum=2.323;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:2630,288,0 chrXIII 802876 . G T 2139 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=0;QD=13.98;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2172,231,0 chrXIII 802880 . C T 2039 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.12;MQ0=0;QD=13.41;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2072,219,0 chrXIII 802912 . A G 2266 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=13.90;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:2299,249,0 chrXIII 802921 . G A 2297 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=13.51;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:2330,246,0 chrXIII 802960 . T C 3735.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=18.86;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3735,411,0 chrXIII 802989 . T C 3866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=204;Dels=0.00;FS=3.554;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=-1.358;QD=18.95;ReadPosRankSum=1.681;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:3866,432,0 chrXIII 803013 . G A 4137.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=18.80;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4137,453,0 chrXIII 803021 . C T 4392.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=19.35;SB=-3.050e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4392,463,0 chrXIII 803149 . T C 4101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=177;Dels=0.00;FS=3.033;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-1.528;QD=23.17;ReadPosRankSum=2.394;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:4101,453,0 chrXIII 803211 . T C 5388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=229;Dels=0.00;FS=9.616;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.224;QD=23.53;ReadPosRankSum=2.969;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:3,226:229:99:5388,606,0 chrXIII 803536 . T G 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=15.9304;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.046;QD=24.11;ReadPosRankSum=1.663;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3641,402,0 chrXIII 803680 . G A 4040.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,176:181:99:4040,444,0 chrXIII 803905 . C T 4595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=197;Dels=0.00;FS=3.807;HaplotypeScore=8.8940;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.433;QD=23.32;ReadPosRankSum=1.257;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4595,462,0 chrXIII 804103 . T C 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=3.540;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.738;QD=22.21;ReadPosRankSum=1.647;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2765,303,0 chrXIII 804379 . C G 2794 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=21.01;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2827,309,0 chrXIII 804397 . C A 2443 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=18.10;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2476,270,0 chrXIII 804400 . G A 2406 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=16.83;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:2439,267,0 chrXIII 804413 . A C 2617 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=18.05;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:2650,294,0 chrXIII 804770 . C T 3915.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.11;MQ0=0;QD=21.28;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3915,426,0 chrXIII 804774 . A T 3906.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=21.34;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3906,411,0 chrXIII 804798 . G A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=18.78;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3437,357,0 chrXIII 804802 . G A 3124 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.6514;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=16.89;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3157,333,0 chrXIII 804869 . C T 3626.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.39;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3626,399,0 chrXIII 804888 . T A 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.01;FS=4.194;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=0.531;QD=20.19;ReadPosRankSum=1.673;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3573,378,0 chrXIII 804916 . A G 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=184;Dels=0.00;FS=5.631;HaplotypeScore=6.1075;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;MQRankSum=-1.676;QD=17.36;ReadPosRankSum=2.940;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:3227,357,0 chrXIII 804970 . G A 2752 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;QD=17.42;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2785,294,0 chrXIII 804991 . G A 2773 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=20.69;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2806,294,0 chrXIII 805159 . T C 2011 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=10.4444;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=22.60;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:2044,222,0 chrXIII 805204 . T C 1989 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=20.94;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2022,222,0 chrXIII 805213 . G A 2041 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=68.0273;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=22.18;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2074,225,0 chrXIII 805270 . C A 2301 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=21.71;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2334,252,0 chrXIII 805321 . C T 2317 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=18.54;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2350,249,0 chrXIII 805324 . A G 2248 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=17.56;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2281,258,0 chrXIII 805419 . A G 2989 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8729;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=23.17;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3022,336,0 chrXIII 805436 . G A 2872 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=21.76;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2905,306,0 chrXIII 805455 . A G 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.140;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=-0.025;QD=21.35;ReadPosRankSum=1.605;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2936,333,0 chrXIII 805482 . G A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3336;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=22.85;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3565,387,0 chrXIII 805521 . C T 3525.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=23.66;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3525,387,0 chrXIII 805574 . T C 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=3.680;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=-1.217;QD=21.05;ReadPosRankSum=1.711;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3537,396,0 chrXIII 805587 . C T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.49;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3509,366,0 chrXIII 805689 . C A 4041.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=24.34;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:4041,435,0 chrXIII 805724 . C T 3544.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.63;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3544,378,0 chrXIII 805954 . A G 4714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=3.224;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.550;QD=22.56;ReadPosRankSum=1.682;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4714,528,0 chrXIII 806063 . C A 2507 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=18.85;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2540,267,0 chrXIII 806068 . G T 2433 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=18.02;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2466,261,0 chrXIII 806108 . T C 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=171;Dels=0.00;FS=12.373;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=1.292;QD=17.36;ReadPosRankSum=2.959;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:3,166:171:99:3001,330,0 chrXIII 806118 . A G 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-0.436;QD=16.74;ReadPosRankSum=1.712;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:2895,318,0 chrXIII 806431 . C T 3191 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3224,336,0 chrXIII 806518 . A C 2222 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=19.84;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2255,252,0 chrXIII 806522 . G A 2418 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.21;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2451,258,0 chrXIII 806533 . A T 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=0.475;QD=19.03;ReadPosRankSum=1.704;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2393,261,0 chrXIII 807165 . G A 4509.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=18.9420;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.27;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4509,483,0 chrXIII 807432 . T C 2676 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.43;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2709,303,0 chrXIII 807457 . T C 2343 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.52;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2376,261,0 chrXIII 807522 . C T 2752 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.01;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2785,297,0 chrXIII 807595 . T C 3466.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.11;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3466,387,0 chrXIII 807655 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=25.79;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3430,357,0 chrXIII 807742 . A G 1900 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=15.32;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1933,216,0 chrXIII 807743 . T G 1916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;MQRankSum=-1.369;QD=15.33;ReadPosRankSum=1.592;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:1949,216,0 chrXIII 807915 . C G 2737 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=23.00;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2770,309,0 chrXIII 807924 . C G 2610 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=21.93;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,115:119:99:2643,288,0 chrXIII 807956 . G A 2514 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=22.65;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2547,282,0 chrXIII 808003 . T C 2086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=8.875;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-0.518;QD=23.70;ReadPosRankSum=2.394;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:2119,231,0 chrXIII 808040 . A G 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=87;Dels=0.00;FS=2.810;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.572;QD=23.74;ReadPosRankSum=2.393;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:2098,231,0 chrXIII 808144 . T C 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.522;QD=19.99;ReadPosRankSum=1.680;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1372,150,0 chrXIII 808186 . C A 983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.250;DP=79;Dels=0.00;FS=3.925;HaplotypeScore=67.8592;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=0.987;QD=12.44;ReadPosRankSum=-1.425;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1016,108,0 chrXIII 808382 . G C 2882 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=40.75;MQ0=0;QD=22.69;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,123:127:99:2915,318,0 chrXIII 808603 . A G 88.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.11;MQ0=22;MQRankSum=1.920;QD=2.84;ReadPosRankSum=1.920;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:24,7:31:31:118,0,31 chrXIII 808644 . C T 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;DP=34;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.88;MQ0=22;MQRankSum=-2.637;QD=1.03;ReadPosRankSum=2.637;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,13:34:65:65,0,65 chrXIII 808685 . T G 79.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=17;Dels=0.00;FS=10.792;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.85;MQ0=5;MQRankSum=0.000;QD=4.68;ReadPosRankSum=1.448;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:1,15:17:12:112,12,0 chrXIII 808802 . T C 12.35 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DP=8;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.47;MQ0=3;MQRankSum=0.731;QD=1.54;ReadPosRankSum=0.731;SB=-2.586e+00 GT:AD:DP:GQ:PL 0/1:2,5:8:14:42,0,14 chrXIII 808828 . G T 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=1;MLEAF=0.500;MQ=18.66;MQ0=11;MQRankSum=2.373;QD=1.00;ReadPosRankSum=-3.090;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,4:32:62:62,0,271 chrXIII 808852 . C T 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=18.06;MQ0=10;MQRankSum=2.434;QD=1.18;ReadPosRankSum=-3.001;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,4:28:63:63,0,228 chrXIII 808907 . T G 64.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;DP=91;Dels=0.01;FS=43.317;HaplotypeScore=15.6556;MLEAC=1;MLEAF=0.500;MQ=29.13;MQ0=1;MQRankSum=0.749;QD=0.70;ReadPosRankSum=3.343;SB=-5.981e-03 GT:AD:DP:GQ:PL 0/1:84,4:90:55:94,0,55 chrXIII 808926 . G A 523 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;QD=4.93;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:60:556,60,0 chrXIII 808933 . G A 554 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;QD=5.08;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:63:587,63,0 chrXIII 808942 . G A 755 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.02;MQ0=0;QD=6.62;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:84:788,84,0 chrXIII 808957 . T C 1583 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;QD=10.77;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:1616,180,0 chrXIII 809106 . G A 3621.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.3501;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;QD=21.30;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3621,396,0 chrXIII 809126 . A G 3480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;MQRankSum=-0.250;QD=20.84;ReadPosRankSum=1.690;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3480,372,0 chrXIII 809198 . A G 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=164;Dels=0.00;FS=3.024;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=0.204;QD=20.16;ReadPosRankSum=2.419;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3307,363,0 chrXIII 809204 . C T 3345.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=20.65;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3345,357,0 chrXIII 809254 . G A 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.289;DP=165;Dels=0.00;FS=3.118;HaplotypeScore=6.0283;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=1.373;QD=21.90;ReadPosRankSum=0.739;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3614,387,0 chrXIII 809300 . C T 3309.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.88;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3309,348,0 chrXIII 809473 . C T 2414 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.36;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2447,255,0 chrXIII 809562 . T C 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.9881;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.161;QD=24.11;ReadPosRankSum=1.661;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2396,267,0 chrXIII 810028 . G A 6348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.038;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.694;QD=23.34;ReadPosRankSum=0.866;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:1,271:272:99:6348,656,0 chrXIII 810085 . G A 6680.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=17.1099;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.03;SB=-2.775e+03 GT:AD:DP:GQ:PL 1/1:0,276:278:99:6680,715,0 chrXIII 810229 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3837,411,0 chrXIII 810415 . A T 5443.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=19.7348;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.46;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5443,588,0 chrXIII 810963 . C A 2836 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.55;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2869,312,0 chrXIII 811161 . A G 4935.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.3945;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.18;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4935,534,0 chrXIII 811666 . G A 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.265;DP=203;Dels=0.00;FS=2.006;HaplotypeScore=11.4804;MLEAC=1;MLEAF=0.500;MQ=46.32;MQ0=0;MQRankSum=-8.414;QD=0.19;ReadPosRankSum=-5.306;SB=-3.190e+02 GT:AD:DP:GQ:PL 0/1:151,52:203:69:69,0,2692 chrXIII 811677 . A G 2883 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=3.457;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;MQRankSum=-0.734;QD=15.67;ReadPosRankSum=1.713;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:2916,315,0 chrXIII 811681 . G T 140.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.118;DP=180;Dels=0.00;FS=4.712;HaplotypeScore=8.4105;MLEAC=1;MLEAF=0.500;MQ=42.68;MQ0=0;MQRankSum=-7.470;QD=0.78;ReadPosRankSum=-0.232;SB=-4.180e+02 GT:AD:DP:GQ:PL 0/1:120,59:180:99:170,0,1967 chrXIII 811683 . G T 178.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.101;DP=175;Dels=0.00;FS=4.741;HaplotypeScore=6.0444;MLEAC=1;MLEAF=0.500;MQ=42.09;MQ0=0;MQRankSum=-7.753;QD=1.02;ReadPosRankSum=0.926;SB=-4.320e+02 GT:AD:DP:GQ:PL 0/1:116,59:175:99:208,0,1975 chrXIII 811684 . A T 183.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;DP=175;Dels=0.00;FS=4.741;HaplotypeScore=6.0444;MLEAC=1;MLEAF=0.500;MQ=42.09;MQ0=0;MQRankSum=-7.340;QD=1.05;ReadPosRankSum=1.495;SB=-4.350e+02 GT:AD:DP:GQ:PL 0/1:116,59:175:99:213,0,1986 chrXIII 811687 . G T 177.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.153;DP=169;Dels=0.00;FS=3.795;HaplotypeScore=6.6228;MLEAC=1;MLEAF=0.500;MQ=41.31;MQ0=0;MQRankSum=-6.561;QD=1.05;ReadPosRankSum=2.477;SB=-4.540e+02 GT:AD:DP:GQ:PL 0/1:106,59:169:99:207,0,1735 chrXIII 811688 . A G 169.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.679;DP=165;Dels=0.00;FS=3.821;HaplotypeScore=4.3621;MLEAC=1;MLEAF=0.500;MQ=40.75;MQ0=0;MQRankSum=-7.257;QD=1.02;ReadPosRankSum=3.803;SB=-4.280e+02 GT:AD:DP:GQ:PL 0/1:106,59:165:99:199,0,1757 chrXIII 811720 . A T 325.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.980;DP=189;Dels=0.00;FS=0.641;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=42.21;MQ0=0;MQRankSum=-2.094;QD=1.72;ReadPosRankSum=-8.601;SB=-2.830e+02 GT:AD:DP:GQ:PL 0/1:145,44:189:99:355,0,1317 chrXIII 811721 . G C 251.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DP=188;Dels=0.00;FS=0.658;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=42.09;MQ0=0;MQRankSum=-4.647;QD=1.34;ReadPosRankSum=-8.225;SB=-2.090e+02 GT:AD:DP:GQ:PL 0/1:147,40:188:99:281,0,1401 chrXIII 811756 . A G 2988 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.5312;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=17.58;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3021,327,0 chrXIII 812113 . C G 4156.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=15.9036;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4156,456,0 chrXIII 812562 . G A 4126.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.4482;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.27;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4126,441,0 chrXIII 812580 . A G 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.8214;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=1.325;QD=18.31;ReadPosRankSum=-0.417;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:3443,387,0 chrXIII 812787 . T A 4679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.5677;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.451;QD=23.63;ReadPosRankSum=1.714;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4679,490,0 chrXIII 813019 . G A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.7076;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=19.69;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3662,405,0 chrXIII 813178 . A G 4220.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=189;Dels=0.00;FS=8.281;HaplotypeScore=16.1920;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.667;QD=22.33;ReadPosRankSum=2.423;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:2,184:189:99:4220,462,0 chrXIII 813408 . A G 5368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-1.732;QD=21.65;ReadPosRankSum=1.718;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:1,246:248:99:5368,597,0 chrXIII 813440 . C T 5967.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.43;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,266:266:99:5967,637,0 chrXIII 813465 . A G 5505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=255;Dels=0.00;FS=5.496;HaplotypeScore=8.0952;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.224;QD=21.59;ReadPosRankSum=2.949;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:3,252:255:99:5505,612,0 chrXIII 813547 . A G 4266.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.5892;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.31;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4266,471,0 chrXIII 813634 . A G 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.0207;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.083;QD=21.20;ReadPosRankSum=1.710;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3392,375,0 chrXIII 814155 . C T 3501.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.19;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3501,372,0 chrXIII 814204 . A G 2860 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.70;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2893,327,0 chrXIII 814438 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.1343;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.27;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3336,357,0 chrXIII 814574 . G A 4488.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.4687;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.13;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4488,472,0 chrXIII 814809 . T C 3335.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0924;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3335,369,0 chrXIII 814898 . A G 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.263;DP=126;Dels=0.00;FS=9.237;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=2.526;QD=22.87;ReadPosRankSum=3.193;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:4,122:126:99:2915,333,0 chrXIII 815081 . T G 3362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.073;QD=23.68;ReadPosRankSum=1.586;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3362,378,0 chrXIII 815338 . A G 2710 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2743,300,0 chrXIII 815589 . A C 1934 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.30;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1967,219,0 chrXIII 815640 . C T 2228 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.63;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2261,240,0 chrXIII 815882 . T C 4906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.525;QD=24.78;ReadPosRankSum=1.697;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4906,540,0 chrXIII 815905 . C T 4658.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=24.26;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4658,501,0 chrXIII 815956 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=23.47;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3826,414,0 chrXIII 815979 . C T 4310.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.1224;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=24.63;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4310,454,0 chrXIII 816075 . T C 3975.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.52;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3975,432,0 chrXIII 816131 . A G 3368.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.45;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3368,372,0 chrXIII 816209 . A G 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=141;Dels=0.00;FS=6.711;HaplotypeScore=5.4318;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.793;QD=19.52;ReadPosRankSum=2.093;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:2,136:141:99:2786,297,0 chrXIII 816212 . A G 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=140;Dels=0.00;FS=6.912;HaplotypeScore=7.9561;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-0.080;QD=19.64;ReadPosRankSum=2.397;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2782,309,0 chrXIII 816290 . C T 2464 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.61;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2497,264,0 chrXIII 816350 . A T 2980 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3013,321,0 chrXIII 816512 . G A 3289.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.50;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3289,351,0 chrXIII 817301 . C A 3098 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.65;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3131,330,0 chrXIII 817457 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.85;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3315,363,0 chrXIII 817520 . G A 3168 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3804;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=25.76;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3201,345,0 chrXIII 817706 . A C 4255.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.0855;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.51;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4255,468,0 chrXIII 817730 . C A 4443.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.1250;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.55;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4443,483,0 chrXIII 817903 . T C 7926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=336;Dels=0.00;FS=2.842;HaplotypeScore=13.2480;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.238;QD=23.59;ReadPosRankSum=2.406;SB=-3.595e+03 GT:AD:DP:GQ:PL 1/1:2,333:336:99:7926,876,0 chrXIII 818165 . G A 7221.01 PASS AC=2;AF=1.00;AN=2;DP=358;Dels=0.00;FS=0.000;HaplotypeScore=6.0329;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=20.17;SB=-3.926e+03 GT:AD:DP:GQ:PL 1/1:0,356:358:99:7221,766,0 chrXIII 818167 . T C 7011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=356;Dels=0.00;FS=11.754;HaplotypeScore=7.4043;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=-1.986;QD=19.69;ReadPosRankSum=2.974;SB=-3.704e+03 GT:AD:DP:GQ:PL 1/1:3,348:356:99:7011,771,0 chrXIII 818204 . A G 7475.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=395;Dels=0.00;FS=2.848;HaplotypeScore=31.6342;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-2.088;QD=18.92;ReadPosRankSum=2.412;SB=-4.079e+03 GT:AD:DP:GQ:PL 1/1:2,391:395:99:7475,837,0 chrXIII 818235 . C T 8138.01 filter AC=2;AF=1.00;AN=2;DP=392;Dels=0.00;FS=0.000;HaplotypeScore=21.6666;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.76;SB=-4.191e+03 GT:AD:DP:GQ:PL 1/1:0,391:392:99:8138,850,0 chrXIII 818309 . G T 7041.01 PASS AC=2;AF=1.00;AN=2;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.87;SB=-3.756e+03 GT:AD:DP:GQ:PL 1/1:0,320:322:99:7041,763,0 chrXIII 818327 . A G 6960.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.400;DP=315;Dels=0.00;FS=8.794;HaplotypeScore=14.7795;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-1.643;QD=22.10;ReadPosRankSum=3.428;SB=-3.756e+03 GT:AD:DP:GQ:PL 1/1:4,309:315:99:6960,765,0 chrXIII 818360 . G A 6127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=16.7134;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-0.594;QD=22.36;ReadPosRankSum=1.643;SB=-3.351e+03 GT:AD:DP:GQ:PL 1/1:1,271:274:99:6127,652,0 chrXIII 818478 . A G 6233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=15.1697;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.030;QD=21.27;ReadPosRankSum=1.720;SB=-3.419e+03 GT:AD:DP:GQ:PL 1/1:1,292:293:99:6233,684,0 chrXIII 818504 . G A 5379.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=5.4150;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=21.96;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5379,577,0 chrXIII 818591 . G A 4437.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.0656;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=22.19;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4437,477,0 chrXIII 818759 . G C 4763.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.26;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4763,522,0 chrXIII 818815 . T A 5662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=16.6567;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=0.954;QD=23.89;ReadPosRankSum=1.673;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:1,235:237:99:5662,621,0 chrXIII 818970 . T C 6442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.378;DP=275;Dels=0.00;FS=8.893;HaplotypeScore=13.2869;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.073;QD=23.43;ReadPosRankSum=3.398;SB=-3.300e+03 GT:AD:DP:GQ:PL 1/1:4,270:275:99:6442,702,0 chrXIII 819018 . C T 6450.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=16.3520;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.71;SB=-3.385e+03 GT:AD:DP:GQ:PL 1/1:0,281:284:99:6450,694,0 chrXIII 819065 . C G 5457.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=13.4779;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=18.13;SB=-3.541e+03 GT:AD:DP:GQ:PL 1/1:0,296:301:99:5457,594,0 chrXIII 819077 . G A 4794.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=15.32;SB=-3.961e+03 GT:AD:DP:GQ:PL 1/1:0,313:313:99:4794,514,0 chrXIII 819078 . C G 4715.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=14.87;SB=-4.063e+03 GT:AD:DP:GQ:PL 1/1:0,316:317:99:4715,519,0 chrXIII 819114 . C T 4066.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=12.95;SB=-3.789e+03 GT:AD:DP:GQ:PL 1/1:0,313:314:99:4066,447,0 chrXIII 819141 . A C 4545.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=316;Dels=0.00;FS=2.984;HaplotypeScore=9.6060;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=-0.707;QD=14.38;ReadPosRankSum=2.426;SB=-3.791e+03 GT:AD:DP:GQ:PL 1/1:2,312:316:99:4545,510,0 chrXIII 819393 . A T 8742.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=25.0887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.05;SB=-3.869e+03 GT:AD:DP:GQ:PL 1/1:0,349:349:99:8742,928,0 chrXIII 819699 . T C 5093.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=19.2010;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.15;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,263:266:99:5093,567,0 chrXIII 819776 . T C 5132.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=16.5348;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.84;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5132,567,0 chrXIII 819989 . C T 3544.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.86;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3544,375,0 chrXIII 820184 . C A 4898.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.0136;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4898,523,0 chrXIII 820241 . C T 4779.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=12.1239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4779,519,0 chrXIII 820753 . G A 4796.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.67;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:4796,511,0 chrXIII 821125 . G A 4278.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.9171;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4278,468,0 chrXIII 821386 . T C 4164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=186;Dels=0.00;FS=4.038;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.582;QD=22.39;ReadPosRankSum=1.713;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4164,453,0 chrXIII 821494 . T C 3944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=165;Dels=0.00;FS=6.100;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.365;QD=23.90;ReadPosRankSum=2.360;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3944,435,0 chrXIII 822331 . A G 5980.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=16.7630;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.67;SB=-3.089e+03 GT:AD:DP:GQ:PL 1/1:0,272:276:99:5980,675,0 chrXIII 822465 . G T 4792.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=22.19;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:4792,499,0 chrXIII 822473 . T C 4412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=209;Dels=0.00;FS=7.139;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-0.644;QD=21.11;ReadPosRankSum=1.715;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4412,480,0 chrXIII 822625 . A G 284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=75;Dels=0.03;FS=0.000;HaplotypeScore=16.1602;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=1;MQRankSum=0.710;QD=3.79;ReadPosRankSum=0.085;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:1,62:73:36:317,36,0 chrXIII 822844 . A G 2977 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.44;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3010,330,0 chrXIII 823029 . A G 3938.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=168;Dels=0.00;FS=3.776;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.442;QD=23.44;ReadPosRankSum=1.670;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3938,432,0 chrXIII 823644 . T C 4479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=190;Dels=0.00;FS=2.925;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;MQRankSum=-1.299;QD=23.57;ReadPosRankSum=2.320;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4479,501,0 chrXIII 823734 . C T 5227.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=16.0844;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.54;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5227,562,0 chrXIII 824166 . T G 4498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=198;Dels=0.00;FS=3.990;HaplotypeScore=15.7351;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.295;QD=22.72;ReadPosRankSum=1.715;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4498,489,0 chrXIII 824199 . G A 4600.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=16.0860;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.01;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4600,513,0 chrXIII 824526 . C T 4624.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.60;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4624,490,0 chrXIII 824589 . A G 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.558;QD=22.64;ReadPosRankSum=1.693;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4030,441,0 chrXIII 824598 . A G 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.409;DP=175;Dels=0.00;FS=2.399;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-0.985;QD=21.70;ReadPosRankSum=3.409;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:4,169:175:99:3797,420,0 chrXIII 824640 . T C 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=157;Dels=0.00;FS=4.223;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=1.066;QD=21.64;ReadPosRankSum=1.710;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3397,372,0 chrXIII 824795 . C A 2868 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=20.49;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2901,324,0 chrXIII 824813 . A G 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=144;Dels=0.00;FS=4.363;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;MQRankSum=-0.024;QD=16.61;ReadPosRankSum=1.708;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,141:144:99:2425,273,0 chrXIII 824825 . C T 2183 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=15.37;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2216,240,0 chrXIII 824848 . C T 2342 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=15.82;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2375,255,0 chrXIII 824885 . A G 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=4.268;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=-0.760;QD=17.52;ReadPosRankSum=1.712;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3047,339,0 chrXIII 825080 . G A 5125.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=24.64;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:5125,535,0 chrXIII 825266 . A G 4113.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.8218;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.678;QD=21.42;ReadPosRankSum=1.714;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4113,453,0 chrXIII 825407 . G A 4453.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.2877;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.19;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4453,477,0 chrXIII 825542 . C G 3127 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.1286;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.85;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3160,354,0 chrXIII 825551 . A G 3108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=152;Dels=0.00;FS=3.367;HaplotypeScore=7.8012;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=1.231;QD=20.45;ReadPosRankSum=0.114;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3141,348,0 chrXIII 825605 . T C 2570 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=18.62;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2603,294,0 chrXIII 825734 . G A 4482.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.8784;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.36;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4482,477,0 chrXIII 825791 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=4.242;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=1.369;QD=22.29;ReadPosRankSum=1.689;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3633,414,0 chrXIII 825884 . G T 4260.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.96;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4260,454,0 chrXIII 826214 . G A 3992.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.55;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3992,438,0 chrXIII 826314 . C T 4077.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.70;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4077,427,0 chrXIII 826499 . G A 3750.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.2943;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.46;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3750,408,0 chrXIII 826533 . A G 4229.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=178;Dels=0.00;FS=6.550;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.421;QD=23.76;ReadPosRankSum=2.408;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4229,468,0 chrXIII 826594 . A G 4213.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=16.6767;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.15;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4213,462,0 chrXIII 826641 . T C 3442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.719;DP=162;Dels=0.00;FS=5.690;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.131;QD=21.25;ReadPosRankSum=2.956;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:3442,381,0 chrXIII 826705 . C T 3944.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.5866;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.32;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3944,415,0 chrXIII 826778 . T C 3633.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.57;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3633,402,0 chrXIII 826818 . T G 3013 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5993;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.78;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3046,336,0 chrXIII 826837 . C T 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=4.028;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=0.207;QD=22.66;ReadPosRankSum=1.034;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3070,327,0 chrXIII 826921 . A G 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.810;QD=22.81;ReadPosRankSum=1.710;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3513,378,0 chrXIII 827091 . A G 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=4.048;HaplotypeScore=6.8218;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=1.487;QD=22.01;ReadPosRankSum=1.678;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2828,315,0 chrXIII 827271 . G A 4871.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4871,534,0 chrXIII 827328 . C T 5229.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.45;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5229,553,0 chrXIII 827517 . A G 4750.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.02;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4750,534,0 chrXIII 827633 . T C 4268.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=190;Dels=0.00;FS=6.136;HaplotypeScore=15.9196;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.860;QD=22.46;ReadPosRankSum=2.398;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4268,471,0 chrXIII 827682 . A G 2925 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.9811;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.24;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2958,330,0 chrXIII 827739 . A G 2219 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3071;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.13;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2252,246,0 chrXIII 827748 . G A 2523 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3634;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.87;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2556,267,0 chrXIII 827846 . A C 3631.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=3.034;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-0.728;QD=23.13;ReadPosRankSum=2.387;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3631,402,0 chrXIII 827847 . G A 3743.01 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=23.99;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3743,402,0 chrXIII 827853 . A G 3610.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=151;Dels=0.00;FS=6.108;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=0.203;QD=23.91;ReadPosRankSum=2.417;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3610,396,0 chrXIII 827972 . T A 2920 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=23.36;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2953,309,0 chrXIII 827994 . A G 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.398;DP=147;Dels=0.00;FS=9.183;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=1.237;QD=21.03;ReadPosRankSum=3.362;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:4,141:147:99:3124,339,0 chrXIII 828032 . T C 3407.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=21.56;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3407,372,0 chrXIII 828055 . T C 3224.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=1.077;QD=21.78;ReadPosRankSum=1.709;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3257,357,0 chrXIII 828110 . C A 2435 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=21.36;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2468,276,0 chrXIII 828116 . T C 2266 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=21.79;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2299,264,0 chrXIII 828138 . A G 2113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;MQRankSum=-0.770;QD=19.21;ReadPosRankSum=1.668;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2146,246,0 chrXIII 828149 . C T 2414 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=20.12;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2447,276,0 chrXIII 828178 . G C 2372 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=19.28;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2405,276,0 chrXIII 828228 . A G 2822 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=20.90;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2855,315,0 chrXIII 828274 . T G 1796 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;QD=16.63;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1829,210,0 chrXIII 828282 . A C 1732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.17;MQ0=0;MQRankSum=-1.299;QD=15.46;ReadPosRankSum=1.701;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1765,201,0 chrXIII 828291 . C T 1654 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.10;MQ0=0;QD=15.17;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1687,186,0 chrXIII 828308 . C T 1200 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;QD=12.24;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1233,141,0 chrXIII 828384 . A C 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=4.175;HaplotypeScore=3.1657;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-0.841;QD=17.53;ReadPosRankSum=1.579;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2417,270,0 chrXIII 828518 . A G 4387.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=24.93;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4387,480,0 chrXIII 828679 . G A 4172.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4172,433,0 chrXIII 828775 . G A 4250.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.88;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4250,450,0 chrXIII 828927 . T C 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=152;Dels=0.00;FS=5.733;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-1.775;QD=22.60;ReadPosRankSum=2.901;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:3,149:152:99:3435,387,0 chrXIII 829028 . T C 4914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=225;Dels=0.00;FS=10.322;HaplotypeScore=13.2689;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-0.857;QD=21.84;ReadPosRankSum=2.383;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:2,220:225:99:4914,546,0 chrXIII 829038 . A T 5077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=5.8017;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=1.489;QD=21.98;ReadPosRankSum=2.386;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:2,229:231:99:5077,561,0 chrXIII 829110 . C T 3873.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.78;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3873,420,0 chrXIII 829176 . A G 3975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=161;Dels=0.00;FS=3.590;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.779;QD=24.69;ReadPosRankSum=1.689;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3975,435,0 chrXIII 829545 . G C 3734.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.63;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3734,417,0 chrXIII 830235 . T C 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=85;Dels=0.00;FS=7.678;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.015;QD=21.87;ReadPosRankSum=2.362;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:2,82:85:99:1892,210,0 chrXIII 830715 . C T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.21;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4375,480,0 chrXIII 831156 . A G 4449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=14.8461;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.277;QD=22.13;ReadPosRankSum=2.425;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4449,489,0 chrXIII 831366 . C A 2492 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.25;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2525,270,0 chrXIII 831576 . T C 1413 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=15.03;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1446,159,0 chrXIII 831682 . A G 2714 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.1230;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=19.53;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2747,303,0 chrXIII 831687 . G A 2809 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.2132;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=19.64;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2842,300,0 chrXIII 831723 . T C 2775 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.54;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2808,306,0 chrXIII 831873 . C T 4121.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.96;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4121,430,0 chrXIII 831921 . A G 4425.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=24.45;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4425,483,0 chrXIII 831989 . T C 4686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=3.606;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.554;QD=24.03;ReadPosRankSum=1.679;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4686,510,0 chrXIII 832038 . T C 3977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=181;Dels=0.00;FS=3.492;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.579;QD=21.97;ReadPosRankSum=1.656;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3977,441,0 chrXIII 832077 . A T 4033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.696;DP=170;Dels=0.00;FS=12.205;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.980;QD=23.72;ReadPosRankSum=3.762;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:5,165:170:99:4033,429,0 chrXIII 832278 . G A 3514.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8911;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.57;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3514,369,0 chrXIII 832299 . G A 2939 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=25.12;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2972,312,0 chrXIII 832337 . A G 2217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=107;Dels=0.00;FS=2.816;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.334;QD=20.72;ReadPosRankSum=2.404;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2250,246,0 chrXIII 832356 . T A 1838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=4.102;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.654;QD=20.42;ReadPosRankSum=1.694;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1871,195,0 chrXIII 832782 . A G 4822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=202;Dels=0.00;FS=9.765;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.667;QD=23.87;ReadPosRankSum=2.945;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:3,199:202:99:4822,549,0 chrXIII 832917 . T A 4154.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4154,439,0 chrXIII 833149 . A G 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.472;QD=20.60;ReadPosRankSum=1.646;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2546,285,0 chrXIII 833279 . A T 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=102;Dels=0.00;FS=2.981;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.036;QD=22.17;ReadPosRankSum=2.304;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:2,99:102:99:2294,255,0 chrXIII 833534 . C T 3527.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.37;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3527,372,0 chrXIII 833648 . G A 4210.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.20;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4210,456,0 chrXIII 834292 . T C 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=135;Dels=0.00;FS=6.253;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.268;QD=22.76;ReadPosRankSum=2.394;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:2,131:135:99:3105,342,0 chrXIII 834662 . C T 3592.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=23.32;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3592,375,0 chrXIII 834670 . A G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.500;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-0.831;QD=21.38;ReadPosRankSum=1.709;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3261,351,0 chrXIII 834775 . C G 2512 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2545,282,0 chrXIII 835125 . T G 3359.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.95;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3359,369,0 chrXIII 835147 . A T 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.052;QD=21.94;ReadPosRankSum=1.627;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3620,378,0 chrXIII 835289 . G A 3512.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=22.95;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3512,381,0 chrXIII 835307 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=19.93;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3261,345,0 chrXIII 835312 . T C 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=-1.083;QD=18.84;ReadPosRankSum=2.404;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3048,336,0 chrXIII 835425 . A T 3757.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.23;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3757,411,0 chrXIII 835545 . C T 4319.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=19.9209;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.92;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,192:197:99:4319,465,0 chrXIII 835676 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3528,372,0 chrXIII 835854 . G A 3191 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3224,342,0 chrXIII 836466 . G A 3534.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.88;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3534,375,0 chrXIII 836848 . T C 3585.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.22;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3585,396,0 chrXIII 837140 . G A 3416.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.2698;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.33;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3416,358,0 chrXIII 837145 . C T 3158 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.80;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3191,336,0 chrXIII 837515 . A G 2859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=127;Dels=0.00;FS=2.790;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.462;QD=22.51;ReadPosRankSum=2.353;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2892,318,0 chrXIII 837786 . T C 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=2.861;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=1.044;QD=23.05;ReadPosRankSum=2.411;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2960,327,0 chrXIII 837907 . G A 2412 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.54;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2445,264,0 chrXIII 838133 . G A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.38;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3259,351,0 chrXIII 838192 . C G 3129 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.19;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3162,342,0 chrXIII 838248 . C A 4057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=16.5653;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.670;QD=24.01;ReadPosRankSum=-0.041;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4057,429,0 chrXIII 838336 . G C 3794.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5134;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3794,420,0 chrXIII 838867 . T C 4244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.1388;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.236;QD=24.82;ReadPosRankSum=1.671;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:4244,471,0 chrXIII 839086 . A G 3223.06 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3256,363,0 chrXIII 839230 . A G 3146 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.83;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3179,351,0 chrXIII 839353 . A C 3071 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.42;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3104,348,0 chrXIII 839457 . A G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=122;Dels=0.00;FS=6.507;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.092;QD=23.52;ReadPosRankSum=2.388;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:2,118:122:99:2903,318,0 chrXIII 839871 . T C 1923 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.89;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1956,213,0 chrXIII 840002 . T A 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=-0.091;QD=21.32;ReadPosRankSum=1.611;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2464,261,0 chrXIII 840033 . C A 2342 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=127.7145;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;QD=18.44;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2375,249,0 chrXIII 840081 . C T 1824 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=17.21;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1857,198,0 chrXIII 840464 . G A 2704 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.88;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2737,291,0 chrXIII 840468 . A G 2620 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=19.12;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2653,291,0 chrXIII 840489 . G A 3319.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.55;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3319,348,0 chrXIII 840667 . C T 3882.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.84;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3882,411,0 chrXIII 841022 . T C 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=157;Dels=0.00;FS=4.743;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.168;QD=22.40;ReadPosRankSum=1.665;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3517,399,0 chrXIII 841486 . A G 4173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.269;QD=22.32;ReadPosRankSum=1.695;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4173,456,0 chrXIII 841704 . C T 3802.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=22.77;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3802,399,0 chrXIII 841708 . T G 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=163;Dels=0.00;FS=3.037;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=-1.251;QD=22.23;ReadPosRankSum=2.404;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3624,396,0 chrXIII 841727 . A G 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=-0.197;QD=22.03;ReadPosRankSum=1.644;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3481,387,0 chrXIII 841760 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.1451;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.97;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3800,411,0 chrXIII 841893 . A G 3455.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.758;DP=179;Dels=0.01;FS=17.706;HaplotypeScore=18.5823;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;MQRankSum=-0.552;QD=19.30;ReadPosRankSum=3.633;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:5,172:177:99:3455,372,0 chrXIII 841903 . G T 2863 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=18.59;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2896,315,0 chrXIII 841905 . T C 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;MQRankSum=-0.527;QD=18.48;ReadPosRankSum=1.689;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3009,336,0 chrXIII 842091 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=23.55;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3721,411,0 chrXIII 842364 . G A 1754 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1787,198,0 chrXIII 842762 . T C 3058 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3445;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.32;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3091,342,0 chrXIII 843238 . C T 3899.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.07;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3899,417,0 chrXIII 843319 . C G 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=3.182;HaplotypeScore=5.2062;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=0.163;QD=18.83;ReadPosRankSum=1.617;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3427,378,0 chrXIII 843320 . T C 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=184;Dels=0.00;FS=3.024;HaplotypeScore=6.7836;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=0.248;QD=18.77;ReadPosRankSum=2.369;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:3454,384,0 chrXIII 843332 . C T 3632.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=19.32;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3632,387,0 chrXIII 843360 . G A 3209.99 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=17.26;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3243,354,0 chrXIII 846009 . G A 3535.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3535,372,0 chrXIII 846261 . C A 4255.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4255,453,0 chrXIII 846321 . C T 4387.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.51;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4387,463,0 chrXIII 847112 . T C 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.166;QD=24.34;ReadPosRankSum=1.687;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3772,417,0 chrXIII 847205 . A G 3857.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3857,429,0 chrXIII 848240 . A G 5468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.024;QD=24.74;ReadPosRankSum=1.685;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:1,218:221:99:5468,600,0 chrXIII 848515 . A C 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-1.475;QD=18.70;ReadPosRankSum=1.709;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2819,306,0 chrXIII 848519 . G T 2715 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.47;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2748,291,0 chrXIII 848560 . G A 2647 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=19.75;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2680,285,0 chrXIII 848643 . T C 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=130;Dels=0.00;FS=2.976;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.913;QD=23.71;ReadPosRankSum=2.373;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:2,126:130:99:3115,345,0 chrXIII 850030 . G C 3977.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.86;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3977,432,0 chrXIII 850650 . C T 4111.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.8956;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4111,441,0 chrXIII 850706 . A G 2586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.034;QD=19.89;ReadPosRankSum=1.705;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2619,288,0 chrXIII 851409 . T A 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=135;Dels=0.00;FS=7.101;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.083;QD=24.29;ReadPosRankSum=2.394;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:3279,339,0 chrXIII 851620 . T A 2467 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.95;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2500,267,0 chrXIII 851747 . T A 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.191;DP=85;Dels=0.02;FS=34.360;HaplotypeScore=52.5905;MLEAC=1;MLEAF=0.500;MQ=54.77;MQ0=0;MQRankSum=-4.646;QD=0.46;ReadPosRankSum=-2.570;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,29:83:69:69,0,717 chrXIII 851822 . T C 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-0.772;QD=22.08;ReadPosRankSum=2.405;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2484,273,0 chrXIII 851845 . G A 1910 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=19.69;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,94:97:99:1943,204,0 chrXIII 851869 . C T 1991 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.32;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2024,213,0 chrXIII 851894 . A G 1824 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=17.54;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1857,204,0 chrXIII 851914 . A G 1982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=4.383;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=-1.117;QD=18.35;ReadPosRankSum=1.603;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2015,225,0 chrXIII 851993 . A C 3172 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=24.03;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3205,351,0 chrXIII 852052 . T C 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=3.023;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-1.070;QD=23.64;ReadPosRankSum=2.379;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:3310,363,0 chrXIII 852118 . C T 2627 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.0247;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.85;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2660,279,0 chrXIII 852220 . T C 2221 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9697;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.43;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2254,246,0 chrXIII 852413 . C T 2209 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2242,243,0 chrXIII 853001 . G A 3042 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.87;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3075,324,0 chrXIII 853271 . C T 4432.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.16;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4432,474,0 chrXIII 853278 . G A 4345.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.99;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4345,460,0 chrXIII 853352 . C T 4718.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.7370;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.15;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4718,516,0 chrXIII 853565 . C T 4071.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.87;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4071,438,0 chrXIII 853595 . A G 3886.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=189;Dels=0.00;FS=2.560;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.594;QD=20.56;ReadPosRankSum=2.931;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:3,185:189:99:3886,429,0 chrXIII 853802 . C T 3660.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.4826;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.24;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3660,396,0 chrXIII 853988 . T A 4013.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=17.9979;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.90;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4013,438,0 chrXIII 854030 . C T 4591.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=18.4354;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.54;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4591,495,0 chrXIII 854292 . T A 4295.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.9464;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.75;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4295,465,0 chrXIII 854532 . T G 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.684;DP=99;Dels=0.00;FS=5.478;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.541;QD=20.74;ReadPosRankSum=2.766;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:3,96:99:99:2086,231,0 chrXIII 855008 . A G 2455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=115;Dels=0.00;FS=2.875;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.145;QD=21.35;ReadPosRankSum=2.386;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2488,270,0 chrXIII 855302 . T A 1547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=83;Dels=0.00;FS=5.574;HaplotypeScore=7.1017;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=0.271;QD=18.64;ReadPosRankSum=1.523;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1580,165,0 chrXIII 855311 . T C 1359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=5.075;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-0.421;QD=18.12;ReadPosRankSum=1.685;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1392,159,0 chrXIII 855635 . G T 3392.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.03;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3392,366,0 chrXIII 855825 . A G 2667 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=24.03;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2700,297,0 chrXIII 855975 . T C 3010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.418;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.078;QD=22.46;ReadPosRankSum=1.706;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3043,336,0 chrXIII 856026 . A G 3145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=-0.082;QD=21.39;ReadPosRankSum=1.638;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3178,351,0 chrXIII 856038 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=22.08;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3058,324,0 chrXIII 856042 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=21.66;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2870,306,0 chrXIII 856103 . C T 2954 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=16.0620;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.10;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2987,321,0 chrXIII 856141 . C G 4131.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.59;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4131,459,0 chrXIII 856391 . C T 4147.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.30;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:4147,444,0 chrXIII 856461 . T C 2849 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.10;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2882,315,0 chrXIII 856542 . T C 2824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.8938;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.577;QD=19.21;ReadPosRankSum=1.709;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2857,312,0 chrXIII 856547 . G A 3007 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3001;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.18;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3040,324,0 chrXIII 856578 . G A 2712 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=19.37;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2745,297,0 chrXIII 856673 . T C 2598 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.95;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2631,285,0 chrXIII 856807 . A G 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=169;Dels=0.00;FS=3.388;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-0.928;QD=24.02;ReadPosRankSum=1.711;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:4059,438,0 chrXIII 857240 . A G 4481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=191;Dels=0.00;FS=2.904;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.624;QD=23.46;ReadPosRankSum=2.398;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4481,498,0 chrXIII 857306 . A G 3161 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.58;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3194,345,0 chrXIII 857448 . C G 3517.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.76;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3517,384,0 chrXIII 857478 . T C 3728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.334;QD=23.16;ReadPosRankSum=1.711;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3728,411,0 chrXIII 857518 . C T 3585.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=18.87;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3585,384,0 chrXIII 857520 . A G 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;DP=187;Dels=0.00;FS=11.764;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-0.757;QD=19.13;ReadPosRankSum=2.952;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:3,183:187:99:3577,393,0 chrXIII 857676 . A G 4966.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.22;SB=-2.257e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4966,558,0 chrXIII 857787 . G A 4391.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.1934;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.75;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4391,468,0 chrXIII 857842 . T C 4934.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.7168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4934,543,0 chrXIII 859063 . A G 1965 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1998,216,0 chrXIII 859155 . T G 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=3.908;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.933;QD=22.46;ReadPosRankSum=1.656;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2077,231,0 chrXIII 859205 . C T 1979 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.56;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2012,210,0 chrXIII 859500 . C T 5496.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.11;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,222:228:99:5496,571,0 chrXIII 859521 . C T 4827.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.7978;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.32;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4827,517,0 chrXIII 859920 . G A 5844.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=22.7097;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.80;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,279:281:99:5844,642,0 chrXIII 861520 . T C 5407.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.34;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5407,594,0 chrXIII 862065 . T C 4783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=207;Dels=0.00;FS=6.084;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.611;QD=23.11;ReadPosRankSum=2.331;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4783,519,0 chrXIII 862092 . T C 4483.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=16.5225;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.55;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4483,504,0 chrXIII 862500 . C T 4529.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.99;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4529,486,0 chrXIII 862593 . C T 4219.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4219,450,0 chrXIII 862695 . C T 4715.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.2752;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.69;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4715,504,0 chrXIII 862977 . T C 5265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=257;Dels=0.00;FS=3.929;HaplotypeScore=5.7775;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.031;QD=20.49;ReadPosRankSum=1.719;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:5265,585,0 chrXIII 863208 . C T 4847.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=8.6964;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.54;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4847,519,0 chrXIII 863229 . T C 4726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=234;Dels=0.00;FS=3.220;HaplotypeScore=7.3033;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=1.360;QD=20.20;ReadPosRankSum=1.717;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:1,232:234:99:4726,516,0 chrXIII 863507 . G A 4448.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=22.93;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4448,469,0 chrXIII 863526 . G A 4243.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=21.65;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4243,465,0 chrXIII 863539 . T C 4078.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=22.04;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4078,453,0 chrXIII 864272 . A G 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.954;QD=20.72;ReadPosRankSum=1.707;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2893,315,0 chrXIII 864888 . G T 4151.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.19;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4151,441,0 chrXIII 865402 . A G 1713 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.69;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1746,195,0 chrXIII 866108 . T C 5762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=245;Dels=0.00;FS=6.256;HaplotypeScore=15.4817;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.890;QD=23.52;ReadPosRankSum=2.399;SB=-3.093e+03 GT:AD:DP:GQ:PL 1/1:2,242:245:99:5762,627,0 chrXIII 866213 . A G 4762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=212;Dels=0.00;FS=6.602;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.511;QD=22.46;ReadPosRankSum=2.391;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:2,208:212:99:4762,516,0 chrXIII 866396 . C T 4981.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=17.5045;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.42;SB=-2.551e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4981,529,0 chrXIII 866753 . T C 5611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.544;QD=23.19;ReadPosRankSum=1.689;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:5611,627,0 chrXIII 867473 . C G 2281 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.28;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2314,252,0 chrXIII 868383 . A G 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=142;Dels=0.00;FS=3.529;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-0.146;QD=21.61;ReadPosRankSum=1.683;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3102,345,0 chrXIII 868389 . T C 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=0.233;QD=21.03;ReadPosRankSum=1.706;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2872,312,0 chrXIII 868542 . G A 2703 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.10;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2736,297,0 chrXIII 868833 . T C 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.257;DP=156;Dels=0.00;FS=8.295;HaplotypeScore=13.2886;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.183;QD=22.01;ReadPosRankSum=3.291;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:4,152:156:99:3434,378,0 chrXIII 869058 . C T 4110.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.22;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4110,447,0 chrXIII 869428 . A G 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=121;Dels=0.00;FS=6.507;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.933;QD=20.65;ReadPosRankSum=2.388;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2532,273,0 chrXIII 869439 . G A 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.730;QD=21.56;ReadPosRankSum=0.301;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2642,269,0 chrXIII 869963 . G T 3570.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=23.18;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3570,378,0 chrXIII 870074 . C T 2686 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2719,297,0 chrXIII 870328 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3789,399,0 chrXIII 872036 . C T 4687.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.8863;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.44;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4687,496,0 chrXIII 872837 . T C 3799.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.35;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3799,420,0 chrXIII 873265 . A G 4576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=199;Dels=0.00;FS=3.010;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.961;QD=23.00;ReadPosRankSum=2.387;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:2,194:199:99:4576,498,0 chrXIII 873817 . G A 6447.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=15.0325;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=24.42;SB=-3.405e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:6447,685,0 chrXIII 873896 . C G 5162.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;DP=359;Dels=0.00;FS=230.844;HaplotypeScore=19.0063;MLEAC=1;MLEAF=0.500;MQ=46.62;MQ0=2;MQRankSum=7.165;QD=14.38;ReadPosRankSum=-0.310;SB=-2.546e+03 GT:AD:DP:GQ:PL 0/1:81,269:359:99:5162,0,231 chrXIII 873897 . A G 5133.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.417;DP=357;Dels=0.00;FS=216.256;HaplotypeScore=16.6403;MLEAC=1;MLEAF=0.500;MQ=46.60;MQ0=2;MQRankSum=6.472;QD=14.38;ReadPosRankSum=-0.243;SB=-2.595e+03 GT:AD:DP:GQ:PL 0/1:88,268:357:99:5133,0,304 chrXIII 874140 . A C 5782.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.138;DP=463;Dels=0.00;FS=338.008;HaplotypeScore=19.1798;MLEAC=1;MLEAF=0.500;MQ=51.93;MQ0=2;MQRankSum=12.259;QD=12.49;ReadPosRankSum=-0.928;SB=-3.227e+03 GT:AD:DP:GQ:PL 0/1:144,316:463:99:5782,0,858 chrXIII 874543 . C T 2499 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.0296;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.37;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2532,267,0 chrXIII 874942 . T A 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=3.091;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.577;QD=24.72;ReadPosRankSum=1.700;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2703,282,0 chrXIII 875463 . C G 4682.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.0979;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.65;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4682,525,0 chrXIII 875658 . C T 5069.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=11.5505;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.73;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5069,532,0 chrXIII 875697 . C T 4654.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=24.11;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4654,510,0 chrXIII 875718 . C T 4753.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.65;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4753,519,0 chrXIII 876530 . G A 4979.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.65;SB=-2.819e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4979,523,0 chrXIII 876538 . C G 4700.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=5.0538;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.17;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4700,516,0 chrXIII 876747 . C G 4867.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=14.6107;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.86;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,198:204:99:4867,528,0 chrXIII 877396 . A T 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=174;Dels=0.00;FS=5.924;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.561;QD=23.00;ReadPosRankSum=2.890;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:4002,424,0 chrXIII 877786 . A T 2977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=128;Dels=0.00;FS=5.987;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.516;QD=23.26;ReadPosRankSum=2.945;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:3010,318,0 chrXIII 877913 . A G 3374.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3374,363,0 chrXIII 878043 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.19;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2670,279,0 chrXIII 878152 . C A 3000 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.00;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3033,318,0 chrXIII 878403 . T C 3275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.522;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=24.26;ReadPosRankSum=1.655;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3275,360,0 chrXIII 878432 . A C 3520.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.16;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3520,396,0 chrXIII 878778 . C T 765 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.6652;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=14.71;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:84:798,84,0 chrXIII 878823 . A C 42.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;DP=16;Dels=0.00;FS=9.031;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=31.83;MQ0=0;MQRankSum=-1.032;QD=2.63;ReadPosRankSum=-1.350;SB=-1.875e+00 GT:AD:DP:GQ:PL 0/1:2,14:16:16:72,0,16 chrXIII 878825 . A T 83.22 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;DP=17;Dels=0.00;FS=9.294;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=34.14;MQ0=0;MQRankSum=-2.012;QD=4.90;ReadPosRankSum=0.671;SB=-3.059e+00 GT:AD:DP:GQ:PL 0/1:2,15:17:10:113,0,10 chrXIII 878834 . A G 209.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=24;Dels=0.00;FS=13.424;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;MQRankSum=-1.734;QD=8.71;ReadPosRankSum=1.576;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:1,21:24:27:242,27,0 chrXIII 879414 . A G 4011.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.79;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4011,450,0 chrXIII 879486 . G A 4439.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.4607;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.49;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4439,486,0 chrXIII 880104 . G A 6225.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=10.3339;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:0,275:278:99:6225,664,0 chrXIII 880179 . T A 5691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.4010;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=1.504;QD=24.64;ReadPosRankSum=1.398;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:2,228:231:99:5691,592,0 chrXIII 880236 . G T 3319.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=21.41;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3319,357,0 chrXIII 880244 . G A 2881 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=19.34;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2914,315,0 chrXIII 880373 . C T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.35;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3599,376,0 chrXIII 880430 . C T 2772 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.9011;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=25.67;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2805,291,0 chrXIII 882115 . G A 3442.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.26;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3442,363,0 chrXIII 883039 . A G 3825.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.61;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3825,417,0 chrXIII 886590 . T C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=126.6126;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=0.11;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:6:47,6,0 chrXIII 887633 . A G 4906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=215;Dels=0.00;FS=2.678;HaplotypeScore=11.5494;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.924;QD=22.82;ReadPosRankSum=2.415;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:2,212:215:99:4906,540,0 chrXIII 887821 . T C 4855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.812;QD=25.29;ReadPosRankSum=1.678;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4855,525,0 chrXIII 888457 . C T 5092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.294;DP=243;Dels=0.00;FS=3.835;HaplotypeScore=13.0163;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.914;QD=20.95;ReadPosRankSum=-0.709;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:1,240:243:99:5092,529,0 chrXIII 892535 . T C 1556 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0669;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=19.45;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1589,174,0 chrXIII 892536 . G A 1622 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0669;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=20.53;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1655,174,0 chrXIII 892587 . G A 1195 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=17.32;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1228,132,0 chrXIII 893178 . T C 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=4.270;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.496;QD=21.35;ReadPosRankSum=1.709;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3171,348,0 chrXIII 893651 . A G 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.325;DP=181;Dels=0.00;FS=8.614;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=0.545;QD=21.31;ReadPosRankSum=3.363;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:4,177:181:99:3857,429,0 chrXIII 893659 . G T 3823.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.97;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3823,414,0 chrXIII 893774 . A G 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=148;Dels=0.00;FS=5.715;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.680;QD=23.39;ReadPosRankSum=2.898;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:3461,378,0 chrXIII 894039 . A T 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=3.431;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.080;QD=24.51;ReadPosRankSum=1.705;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3244,348,0 chrXIII 894275 . C T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.61;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3346,363,0 chrXIII 895737 . T G 4944.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=207;Dels=0.00;FS=2.435;HaplotypeScore=10.6644;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.205;QD=23.88;ReadPosRankSum=2.946;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:3,203:207:99:4944,561,0 chrXIII 895914 . G A 6694.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=15.8395;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.17;SB=-3.274e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:6694,709,0 chrXIII 896064 . G C 4025.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.5718;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.64;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:0,191:195:99:4025,441,0 chrXIII 896227 . A G 4217.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=19.4868;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.74;SB=-2.456e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4217,465,0 chrXIII 896445 . A G 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.5315;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.522;QD=20.36;ReadPosRankSum=1.656;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3685,414,0 chrXIII 896918 . G T 4429.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4429,474,0 chrXIII 897430 . C T 3838.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.9543;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.63;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3838,414,0 chrXIII 897605 . A G 4230.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=19.0148;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.86;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4230,468,0 chrXIII 897645 . A G 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.443;QD=22.59;ReadPosRankSum=1.712;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3908,432,0 chrXIII 897927 . T C 2308 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2341,258,0 chrXIII 898146 . C T 2396 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=26.62;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2429,255,0 chrXIII 898282 . C T 2773 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2806,300,0 chrXIII 898408 . G A 4937.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=23.74;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4937,523,0 chrXIII 898425 . A G 4793.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.2753;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.29;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4793,522,0 chrXIII 898462 . G T 4870.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.53;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4870,517,0 chrXIII 898537 . A C 3943.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.1328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3943,432,0 chrXIII 898606 . A G 5266.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.67;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:0,240:243:99:5266,573,0 chrXIII 898692 . A G 4800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=230;Dels=0.00;FS=3.029;HaplotypeScore=23.4252;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.549;QD=20.87;ReadPosRankSum=2.428;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:4800,528,0 chrXIII 898731 . G A 5251.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=16.5145;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.13;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5251,573,0 chrXIII 898776 . A G 4994.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.01;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4994,543,0 chrXIII 899002 . C A 4035.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.46;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4035,438,0 chrXIII 899076 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.29;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3377,369,0 chrXIII 899239 . T C 3401.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.5747;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.14;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3401,369,0 chrXIII 899258 . A G 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=147;Dels=0.00;FS=2.584;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-1.048;QD=22.63;ReadPosRankSum=2.952;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3326,363,0 chrXIII 899353 . T A 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=121;Dels=0.04;FS=3.001;HaplotypeScore=20.0332;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.414;QD=15.87;ReadPosRankSum=2.280;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:1953,207,0 chrXIII 899513 . C T 2511 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.62;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2544,270,0 chrXIII 899812 . A G 2579 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.23;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2612,288,0 chrXIII 900141 . A G 2346 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2379,258,0 chrXIII 901050 . T C 2609 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.77;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2642,291,0 chrXIII 901080 . C T 3377.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.11;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3377,357,0 chrXIII 901376 . T C 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=4.384;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=-1.497;QD=20.53;ReadPosRankSum=1.703;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2476,270,0 chrXIII 901413 . C T 2183 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=104.9931;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=18.19;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2216,246,0 chrXIII 901451 . G A 2124 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;QD=20.42;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2157,234,0 chrXIII 901535 . A T 2547 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.58;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2580,270,0 chrXIII 901855 . G A 4392.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.8772;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4392,480,0 chrXIII 901903 . A G 4731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=199;Dels=0.00;FS=3.007;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.796;QD=23.77;ReadPosRankSum=2.376;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4731,516,0 chrXIII 902329 . T G 2462 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4910;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.02;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2495,276,0 chrXIII 902587 . C A 2241 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.59;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2274,243,0 chrXIII 902696 . T C 3275.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.08;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3275,360,0 chrXIII 902762 . T G 3294.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.823;QD=23.20;ReadPosRankSum=1.708;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3294,366,0 chrXIII 903135 . T C 4407.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.35;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4407,489,0 chrXIII 903270 . T C 3899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=171;Dels=0.00;FS=6.576;HaplotypeScore=11.9110;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.296;QD=22.80;ReadPosRankSum=2.392;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3899,420,0 chrXIII 903471 . G A 3004 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.25;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3037,318,0 chrXIII 903498 . T C 2751 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.55;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2784,312,0 chrXIII 903771 . T C 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.613;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.770;QD=21.59;ReadPosRankSum=1.700;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2386,258,0 chrXIII 903804 . A G 2400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-0.643;QD=19.35;ReadPosRankSum=1.676;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2433,270,0 chrXIII 903826 . T C 2285 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=19.20;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2318,261,0 chrXIII 903875 . T G 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=137;Dels=0.00;FS=4.936;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.491;QD=17.47;ReadPosRankSum=1.499;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,133:137:99:2427,273,0 chrXIII 903884 . A G 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=136;Dels=0.00;FS=2.578;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.207;QD=19.82;ReadPosRankSum=2.919;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2729,297,0 chrXIII 904006 . C T 1868 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.0914;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=24.58;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1901,201,0 chrXIII 904052 . G A 2109 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=21.09;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2142,228,0 chrXIII 904069 . A C 1948 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.29;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1981,216,0 chrXIII 904347 . C T 4696.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.21;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4696,502,0 chrXIII 905531 . T C 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.899;QD=23.55;ReadPosRankSum=1.644;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3744,405,0 chrXIII 905566 . G A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3276,345,0 chrXIII 906187 . G A 3056 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.9189;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.25;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3089,321,0 chrXIII 907425 . C T 4676.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=24.61;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4676,493,0 chrXIII 907887 . C T 5140.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=12.2991;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.69;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5140,558,0 chrXIII 908138 . C T 346.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.862;DP=428;Dels=0.00;FS=9.164;HaplotypeScore=26.3824;MLEAC=1;MLEAF=0.500;MQ=39.72;MQ0=0;MQRankSum=-3.217;QD=0.81;ReadPosRankSum=-11.436;SB=-6.050e+02 GT:AD:DP:GQ:PL 0/1:296,130:428:99:376,0,3636 chrXIII 908149 . A G 150.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.974;DP=523;Dels=0.00;FS=118.315;HaplotypeScore=23.2208;MLEAC=1;MLEAF=0.500;MQ=37.96;MQ0=0;MQRankSum=1.583;QD=0.29;ReadPosRankSum=-8.029;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:477,43:523:99:180,0,4980 chrXIII 908156 . C T 601.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;DP=611;Dels=0.00;FS=80.183;HaplotypeScore=41.1179;MLEAC=1;MLEAF=0.500;MQ=37.70;MQ0=0;MQRankSum=2.284;QD=0.98;ReadPosRankSum=-9.100;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:527,84:611:99:631,0,5531 chrXIII 908174 . G T 761.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=14.605;DP=808;Dels=0.00;FS=72.219;HaplotypeScore=51.9037;MLEAC=1;MLEAF=0.500;MQ=37.17;MQ0=0;MQRankSum=-13.754;QD=0.94;ReadPosRankSum=3.257;SB=-1.188e+03 GT:AD:DP:GQ:PL 0/1:500,307:808:99:791,0,7766 chrXIII 908175 . T C 671.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560;DP=816;Dels=0.00;FS=75.711;HaplotypeScore=51.9342;MLEAC=1;MLEAF=0.500;MQ=37.24;MQ0=0;MQRankSum=-14.133;QD=0.82;ReadPosRankSum=3.820;SB=-1.112e+03 GT:AD:DP:GQ:PL 0/1:513,299:816:99:701,0,8719 chrXIII 908177 . A G 600.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.930;DP=828;Dels=0.00;FS=79.060;HaplotypeScore=40.1152;MLEAC=1;MLEAF=0.500;MQ=36.98;MQ0=0;MQRankSum=-15.847;QD=0.72;ReadPosRankSum=3.684;SB=-9.580e+02 GT:AD:DP:GQ:PL 0/1:533,293:828:99:630,0,9083 chrXIII 908179 . T G 601.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.032;DP=835;Dels=0.00;FS=76.903;HaplotypeScore=40.3054;MLEAC=1;MLEAF=0.500;MQ=36.87;MQ0=0;MQRankSum=-16.035;QD=0.72;ReadPosRankSum=2.951;SB=-8.370e+02 GT:AD:DP:GQ:PL 0/1:546,288:835:99:631,0,9166 chrXIII 908185 . A G 337.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.888;DP=928;Dels=0.00;FS=80.802;HaplotypeScore=35.2317;MLEAC=1;MLEAF=0.500;MQ=36.73;MQ0=0;MQRankSum=-16.854;QD=0.36;ReadPosRankSum=-2.380;SB=-8.620e+02 GT:AD:DP:GQ:PL 0/1:596,330:928:99:367,0,10075 chrXIII 908218 . C T 411.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.373;DP=948;DS;Dels=0.00;FS=116.298;HaplotypeScore=77.6117;MLEAC=1;MLEAF=0.500;MQ=38.78;MQ0=0;MQRankSum=-15.523;QD=0.43;ReadPosRankSum=-8.859;SB=-1.333e+03 GT:AD:DP:GQ:PL 0/1:592,356:948:99:441,0,11287 chrXIII 908275 . G A 880.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.577;DP=628;DS;Dels=0.00;FS=36.672;HaplotypeScore=141.6766;MLEAC=1;MLEAF=0.500;MQ=45.09;MQ0=16;MQRankSum=-9.228;QD=1.40;ReadPosRankSum=-0.790;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:440,181:628:99:910,0,5965 chrXIII 908359 . A G 452.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;DP=996;DS;Dels=0.00;FS=248.160;HaplotypeScore=147.3209;MLEAC=1;MLEAF=0.500;MQ=37.68;MQ0=8;MQRankSum=0.696;QD=0.45;ReadPosRankSum=-4.238;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:836,154:996:99:482,0,10561 chrXIII 908563 . A G 1505.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.443;DP=775;DS;Dels=0.00;FS=141.714;HaplotypeScore=403.8897;MLEAC=1;MLEAF=0.500;MQ=39.80;MQ0=1;MQRankSum=-16.374;QD=1.94;ReadPosRankSum=7.860;SB=-3.540e+02 GT:AD:DP:GQ:PL 0/1:498,277:775:99:1535,0,7768 chrXIII 908575 . G A 551.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.160;DP=729;DS;Dels=0.00;FS=40.245;HaplotypeScore=415.0051;MLEAC=1;MLEAF=0.500;MQ=38.24;MQ0=1;MQRankSum=-4.964;QD=0.76;ReadPosRankSum=2.878;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:541,117:729:99:581,0,7301 chrXIII 908588 . C T 297.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.986;DP=690;DS;Dels=0.00;FS=80.205;HaplotypeScore=445.8437;MLEAC=1;MLEAF=0.500;MQ=35.39;MQ0=0;MQRankSum=-11.130;QD=0.43;ReadPosRankSum=-5.695;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:545,142:690:99:327,0,6788 chrXIII 908594 . T G 1751.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-12.813;DP=628;DS;Dels=0.00;FS=21.855;HaplotypeScore=426.6449;MLEAC=1;MLEAF=0.500;MQ=34.79;MQ0=0;MQRankSum=-7.301;QD=2.79;ReadPosRankSum=-0.968;SB=-1.227e+03 GT:AD:DP:GQ:PL 0/1:325,298:628:99:1781,0,4392 chrXIII 908611 . G A 133.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.661;DP=424;DS;Dels=0.00;FS=6.302;HaplotypeScore=291.7877;MLEAC=1;MLEAF=0.500;MQ=30.98;MQ0=0;MQRankSum=4.372;QD=0.31;ReadPosRankSum=-6.173;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:359,39:424:99:163,0,2377 chrXIII 908617 . G A 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.487;DP=356;DS;Dels=0.00;FS=66.405;HaplotypeScore=257.0806;MLEAC=1;MLEAF=0.500;MQ=29.58;MQ0=0;MQRankSum=-1.423;QD=0.10;ReadPosRankSum=-8.731;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:242,50:356:65:65,0,1462 chrXIII 908621 . A G 752.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.859;DP=308;DS;Dels=0.00;FS=171.901;HaplotypeScore=451.1851;MLEAC=1;MLEAF=0.500;MQ=28.88;MQ0=0;MQRankSum=-3.933;QD=2.44;ReadPosRankSum=4.578;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:198,110:308:99:782,0,597 chrXIII 908622 . T C 633.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.158;DP=296;DS;Dels=0.00;FS=192.764;HaplotypeScore=441.3717;MLEAC=1;MLEAF=0.500;MQ=27.97;MQ0=0;MQRankSum=-4.120;QD=2.14;ReadPosRankSum=5.503;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:189,99:296:99:663,0,600 chrXIII 908626 . G A 559.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.703;DP=287;Dels=0.00;FS=188.913;HaplotypeScore=504.6974;MLEAC=1;MLEAF=0.500;MQ=26.54;MQ0=0;MQRankSum=-2.660;QD=1.95;ReadPosRankSum=6.127;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:196,91:287:99:589,0,586 chrXIII 908629 . A G 860.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.751;DP=283;Dels=0.00;FS=123.271;HaplotypeScore=557.0381;MLEAC=1;MLEAF=0.500;MQ=26.51;MQ0=0;MQRankSum=2.170;QD=3.04;ReadPosRankSum=5.190;SB=-7.550e+02 GT:AD:DP:GQ:PL 0/1:93,190:283:99:890,0,162 chrXIII 908630 . A G 429.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.034;DP=282;Dels=0.00;FS=251.179;HaplotypeScore=551.7389;MLEAC=1;MLEAF=0.500;MQ=26.58;MQ0=0;MQRankSum=-3.816;QD=1.52;ReadPosRankSum=7.399;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:200,82:282:99:459,0,642 chrXIII 908634 . A C 1441 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=289;Dels=0.03;FS=3.695;HaplotypeScore=578.2716;MLEAC=2;MLEAF=1.00;MQ=26.53;MQ0=0;MQRankSum=0.918;QD=4.99;ReadPosRankSum=-0.807;SB=-3.009e+03 GT:AD:DP:GQ:PL 1/1:1,280:281:99:1474,168,0 chrXIII 908635 . A G 414.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.974;DP=295;Dels=0.00;FS=234.541;HaplotypeScore=585.2779;MLEAC=1;MLEAF=0.500;MQ=26.51;MQ0=0;MQRankSum=-2.831;QD=1.40;ReadPosRankSum=5.762;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:213,82:295:99:444,0,752 chrXIII 908638 . T C 339.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482;DP=288;Dels=0.00;FS=622.632;HaplotypeScore=569.2040;MLEAC=1;MLEAF=0.500;MQ=26.44;MQ0=0;MQRankSum=6.461;QD=1.18;ReadPosRankSum=-2.480;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:185,103:288:99:369,0,845 chrXIII 908642 . G T 722.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=10.628;DP=272;Dels=0.00;FS=202.282;HaplotypeScore=381.1950;MLEAC=1;MLEAF=0.500;MQ=26.26;MQ0=0;MQRankSum=4.529;QD=2.65;ReadPosRankSum=-1.113;SB=-1.909e+03 GT:AD:DP:GQ:PL 0/1:82,190:272:99:752,0,443 chrXIII 908643 . T C 706.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;DP=275;Dels=0.00;FS=197.847;HaplotypeScore=387.1924;MLEAC=1;MLEAF=0.500;MQ=26.20;MQ0=0;MQRankSum=5.427;QD=2.57;ReadPosRankSum=-0.720;SB=-1.887e+03 GT:AD:DP:GQ:PL 0/1:82,193:275:99:736,0,466 chrXIII 908645 . A G 807.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.685;DP=281;Dels=0.00;FS=141.676;HaplotypeScore=378.6717;MLEAC=1;MLEAF=0.500;MQ=26.39;MQ0=0;MQRankSum=6.977;QD=2.87;ReadPosRankSum=2.792;SB=-2.400e+03 GT:AD:DP:GQ:PL 0/1:65,216:281:99:837,0,404 chrXIII 908647 . G T 360.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;DP=290;Dels=0.00;FS=144.978;HaplotypeScore=307.6105;MLEAC=1;MLEAF=0.500;MQ=26.54;MQ0=0;MQRankSum=-5.590;QD=1.24;ReadPosRankSum=-2.927;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:225,65:290:99:390,0,898 chrXIII 908658 . T C 146.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.274;DP=278;Dels=0.00;FS=125.223;HaplotypeScore=116.8763;MLEAC=1;MLEAF=0.500;MQ=28.85;MQ0=0;MQRankSum=-3.011;QD=0.53;ReadPosRankSum=-2.919;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:215,63:278:99:176,0,1364 chrXIII 908659 . T C 1265.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.306;DP=277;Dels=0.00;FS=112.533;HaplotypeScore=118.4537;MLEAC=1;MLEAF=0.500;MQ=29.14;MQ0=0;MQRankSum=4.167;QD=4.57;ReadPosRankSum=2.210;SB=-2.282e+03 GT:AD:DP:GQ:PL 0/1:74,203:277:99:1295,0,132 chrXIII 908660 . T C 1369.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.948;DP=282;Dels=0.00;FS=79.819;HaplotypeScore=119.2424;MLEAC=1;MLEAF=0.500;MQ=29.36;MQ0=0;MQRankSum=5.565;QD=4.85;ReadPosRankSum=2.703;SB=-2.263e+03 GT:AD:DP:GQ:PL 0/1:55,227:282:65:1399,0,65 chrXIII 908678 . C T 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.796;DP=223;Dels=0.00;FS=94.163;HaplotypeScore=28.3002;MLEAC=1;MLEAF=0.500;MQ=34.77;MQ0=0;MQRankSum=-3.568;QD=0.07;ReadPosRankSum=-1.954;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,70:223:46:46,0,1803 chrXIII 908906 . A T 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=179;Dels=0.00;FS=7.311;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=1.070;QD=18.29;ReadPosRankSum=2.408;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3274,348,0 chrXIII 908913 . G A 3293.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.1805;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=18.09;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:3293,345,0 chrXIII 909251 . T C 4792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=14.2228;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.678;QD=22.93;ReadPosRankSum=1.699;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:1,206:209:99:4792,519,0 chrXIII 912213 . C G 4923.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-2.493e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:4923,546,0 chrXIII 912378 . C T 4420.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.90;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4420,469,0 chrXIII 912463 . C G 3742.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3742,414,0 chrXIII 913225 . G A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.34;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3597,390,0 chrXIII 913525 . T C 4025.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.23;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4025,438,0 chrXIII 913888 . G A 3716.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.52;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3716,399,0 chrXIII 914056 . C T 2715 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=18.99;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2748,291,0 chrXIII 914068 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=18.57;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2689,282,0 chrXIII 914143 . A G 3817.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.44;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3817,423,0 chrXIII 914220 . G T 2810 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.45;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2843,306,0 chrXIII 914283 . T A 3505.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.06;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3505,366,0 chrXIII 914425 . G A 3031 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.81;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3064,336,0 chrXIII 914575 . T C 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=1.044;QD=24.03;ReadPosRankSum=1.708;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3388,375,0 chrXIII 914619 . T C 2792 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.52;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2825,309,0 chrXIII 914652 . T C 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=4.384;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.174;QD=21.66;ReadPosRankSum=1.615;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2611,288,0 chrXIII 914684 . T C 2010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=102;Dels=0.00;FS=3.144;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.787;QD=19.71;ReadPosRankSum=1.662;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,98:102:99:2043,225,0 chrXIII 914705 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=22.13;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2290,249,0 chrXIII 914744 . T G 1706 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.23;MQ0=0;QD=16.09;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1739,195,0 chrXIII 914745 . G T 1749 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.01;MQ0=0;QD=16.66;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1782,195,0 chrXIII 914757 . G A 1822 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=0;QD=16.41;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1855,195,0 chrXIII 914791 . C T 1197 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=6.1597;MLEAC=2;MLEAF=1.00;MQ=39.03;MQ0=0;QD=12.09;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1230,135,0 chrXIII 914795 . A C 1012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.3710;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;MQRankSum=-1.248;QD=10.65;ReadPosRankSum=1.695;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,92:95:99:1045,117,0 chrXIII 914895 . A T 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=4.311;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-1.708;QD=24.20;ReadPosRankSum=1.659;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3460,372,0 chrXIII 914987 . C T 1949 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8653;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;QD=20.09;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1982,210,0 chrXIII 915009 . T A 1952 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=19.14;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1985,210,0 chrXIII 915087 . A G 2535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.018;QD=15.84;ReadPosRankSum=1.710;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2568,282,0 chrXIII 915168 . G C 2949 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=17.55;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:2982,324,0 chrXIII 915182 . A G 3186 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=16.95;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3219,351,0 chrXIII 915193 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=16.57;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3280,366,0 chrXIII 915242 . C T 3835.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=17.92;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:3835,417,0 chrXIII 915275 . G A 4314.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=15.7696;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.59;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4314,480,0 chrXIII 915378 . G A 6102.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=16.0308;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=24.70;SB=-3.183e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:6102,655,0 chrXIII 915419 . G A 6135.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=23.96;SB=-3.191e+03 GT:AD:DP:GQ:PL 1/1:0,254:256:99:6135,649,0 chrXIII 915455 . T G 5359.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=15.0629;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=23.10;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:5359,588,0 chrXIII 915486 . A G 4696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.2148;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=1.225;QD=22.69;ReadPosRankSum=1.664;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:1,204:207:99:4696,516,0 chrXIII 915672 . C T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=23.26;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3605,381,0 chrXIII 915718 . A G 4042.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=188;Dels=0.00;FS=7.085;HaplotypeScore=5.1436;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-0.322;QD=21.50;ReadPosRankSum=2.423;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:4042,444,0 chrXIII 915719 . C G 4133.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.5662;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=21.98;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4133,450,0 chrXIII 915910 . G A 5369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;MQRankSum=1.716;QD=24.52;ReadPosRankSum=-0.699;SB=-2.891e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:5369,565,0 chrXIII 915971 . A G 4536.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=23.03;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4536,516,0 chrXIII 916085 . T G 30.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.732;DP=175;Dels=0.00;FS=4.384;HaplotypeScore=1.7820;MLEAC=1;MLEAF=0.500;MQ=29.69;MQ0=0;MQRankSum=0.865;QD=0.17;ReadPosRankSum=-4.667;SB=-2.822e+01 GT:AD:DP:GQ:PL 0/1:163,12:175:10:60,0,10 chrXIII 916101 . T G 2126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=3.839;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;MQRankSum=0.135;QD=12.73;ReadPosRankSum=1.691;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:2159,240,0 chrXIII 916128 . G C 1865 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=120.9526;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=11.66;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:1898,213,0 chrXIII 916136 . A G 249 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.211;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=138.7727;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;MQRankSum=0.433;QD=1.55;ReadPosRankSum=-6.973;SB=3.00 GT:AD:DP:GQ:PL 1/1:141,20:161:30:282,30,0 chrXIII 916139 . G A 223.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;QD=1.46;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,13:153:27:256,27,0 chrXIII 916153 . T C 1564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=3.797;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=0;MQRankSum=-1.574;QD=8.94;ReadPosRankSum=1.712;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:1597,180,0 chrXIII 916161 . G A 1743 SnpCluster AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;QD=9.96;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:1776,195,0 chrXIII 916164 . T C 1802 SnpCluster AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.72;MQ0=0;QD=10.48;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:1835,204,0 chrXIII 916168 . T A 1746 SnpCluster AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=0;QD=10.46;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:1779,192,0 chrXIII 916196 . G T 2248 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=40.07;MQ0=0;QD=13.54;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2281,255,0 chrXIII 916272 . T C 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=3.027;HaplotypeScore=5.1015;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;MQRankSum=-0.540;QD=23.07;ReadPosRankSum=2.390;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3830,429,0 chrXIII 916282 . G A 3888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.5666;MLEAC=2;MLEAF=1.00;MQ=39.09;MQ0=0;MQRankSum=0.557;QD=22.74;ReadPosRankSum=1.382;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3888,426,0 chrXIII 916379 . C G 3925.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.7642;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=23.50;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3925,429,0 chrXIII 916458 . T C 2934 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=20.37;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2967,324,0 chrXIII 916492 . G A 2991 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;QD=17.59;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3024,321,0 chrXIII 916500 . T C 2808 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;QD=16.23;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:2841,318,0 chrXIII 916511 . T C 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=3.192;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.30;MQ0=0;MQRankSum=-1.327;QD=16.05;ReadPosRankSum=1.671;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:2777,306,0 chrXIII 916536 . A G 2475 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=0;QD=15.76;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2508,279,0 chrXIII 916550 . C A 2243 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=16.02;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2276,249,0 chrXIII 916551 . A G 2177 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;QD=15.44;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2210,249,0 chrXIII 916598 . T A 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=3.321;HaplotypeScore=3.9377;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-0.717;QD=23.87;ReadPosRankSum=1.702;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2802,297,0 chrXIII 916639 . T G 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.383;QD=24.41;ReadPosRankSum=1.679;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3231,360,0 chrXIII 916782 . G A 2970 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=23.02;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3003,327,0 chrXIII 916813 . C A 2858 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=21.01;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2891,306,0 chrXIII 916816 . G A 2675 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=19.24;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2708,288,0 chrXIII 917560 . A G 269.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.519;DP=203;Dels=0.00;FS=18.618;HaplotypeScore=20.5955;MLEAC=1;MLEAF=0.500;MQ=44.58;MQ0=3;MQRankSum=-4.872;QD=1.33;ReadPosRankSum=-1.810;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:161,39:203:99:299,0,3287 chrXIII 917789 . C T 2890 filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=26.89;MQ0=8;QD=19.66;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2923,315,0 chrXIII 917845 . T C 1801 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.776;DP=143;Dels=0.00;FS=3.370;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=31.24;MQ0=11;MQRankSum=2.452;QD=12.59;ReadPosRankSum=0.698;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:19,122:143:81:1834,81,0 chrXIII 917863 . G A 2227 filter AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.16;MQ0=7;QD=16.14;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2260,237,0 chrXIII 918043 . A G 94.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.673;DP=131;Dels=0.00;FS=19.310;HaplotypeScore=107.1768;MLEAC=1;MLEAF=0.500;MQ=36.71;MQ0=4;MQRankSum=-0.341;QD=0.72;ReadPosRankSum=-2.227;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:104,26:131:99:124,0,667 chrXIII 918046 . G A 105.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;DP=125;Dels=0.00;FS=0.788;HaplotypeScore=83.3325;MLEAC=1;MLEAF=0.500;MQ=37.29;MQ0=2;MQRankSum=0.041;QD=0.84;ReadPosRankSum=-5.237;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:84,41:125:99:135,0,918 chrXIII 918096 . G A 923 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=6;QD=15.64;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:956,102,0 chrXIII 918132 . T A 64.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.424;DP=58;Dels=0.00;FS=18.274;HaplotypeScore=15.5975;MLEAC=1;MLEAF=0.500;MQ=25.02;MQ0=19;MQRankSum=2.331;QD=1.10;ReadPosRankSum=-3.172;SB=-2.751e+00 GT:AD:DP:GQ:PL 0/1:53,5:58:49:94,0,49 chrXIII 918138 . T A 125.77 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.108;DP=68;Dels=0.00;FS=12.745;HaplotypeScore=7.6936;MLEAC=1;MLEAF=0.500;MQ=26.17;MQ0=20;MQRankSum=-2.421;QD=1.85;ReadPosRankSum=3.721;SB=-4.750e+00 GT:AD:DP:GQ:PL 0/1:8,60:68:0:154,0,0 chrXIII 918260 . T C 4069.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.421;DP=242;Dels=0.00;FS=10.080;HaplotypeScore=18.4780;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=40;MQRankSum=-4.455;QD=16.81;ReadPosRankSum=4.402;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:7,234:242:99:4069,450,0 chrXIII 918339 . C A 1629.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.994;DP=330;Dels=0.00;FS=4.062;HaplotypeScore=2.6722;MLEAC=1;MLEAF=0.500;MQ=29.58;MQ0=63;MQRankSum=-1.933;QD=4.94;ReadPosRankSum=0.527;SB=-3.350e+02 GT:AD:DP:GQ:PL 0/1:212,115:330:99:1659,0,3439 chrXIII 918492 . G C 3444.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;DP=373;Dels=0.00;FS=19.454;HaplotypeScore=27.0970;MLEAC=1;MLEAF=0.500;MQ=38.67;MQ0=25;MQRankSum=12.291;QD=9.23;ReadPosRankSum=-0.506;SB=-1.990e+03 GT:AD:DP:GQ:PL 0/1:172,194:373:99:3444,0,1723 chrXIII 918497 . T C 1249.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;DP=366;Dels=0.00;FS=44.130;HaplotypeScore=26.3083;MLEAC=1;MLEAF=0.500;MQ=37.87;MQ0=31;MQRankSum=-12.450;QD=3.41;ReadPosRankSum=3.320;SB=-5.460e+02 GT:AD:DP:GQ:PL 0/1:211,155:366:99:1279,0,3534 chrXIII 918537 . G A 497.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;DP=392;Dels=0.00;FS=94.929;HaplotypeScore=11.5244;MLEAC=1;MLEAF=0.500;MQ=28.14;MQ0=112;MQRankSum=-7.596;QD=1.27;ReadPosRankSum=-2.736;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/1:187,198:392:99:527,0,2204 chrXIII 918675 . G A 437.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;DP=277;Dels=0.00;FS=95.081;HaplotypeScore=21.0076;MLEAC=1;MLEAF=0.500;MQ=38.14;MQ0=35;MQRankSum=-2.326;QD=1.58;ReadPosRankSum=1.517;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:190,86:277:99:467,0,3448 chrXIII 919410 . C T 4616.01 filter AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=12.6996;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=26;QD=16.03;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,285:288:99:4616,507,0 chrXIII 919541 . T G 3036.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.374;DP=410;Dels=0.00;FS=9.697;HaplotypeScore=19.2630;MLEAC=1;MLEAF=0.500;MQ=42.02;MQ0=7;MQRankSum=-6.744;QD=7.40;ReadPosRankSum=0.464;SB=-9.040e+02 GT:AD:DP:GQ:PL 0/1:131,279:410:99:3066,0,2286 chrXIII 919766 . C G 2179.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.431;DP=397;Dels=0.00;FS=26.389;HaplotypeScore=6.9887;MLEAC=1;MLEAF=0.500;MQ=40.88;MQ0=2;MQRankSum=-6.861;QD=5.49;ReadPosRankSum=0.120;SB=-1.005e+03 GT:AD:DP:GQ:PL 0/1:124,272:397:99:2209,0,1926 chrXIII 919767 . G A 2310.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.297;DP=398;Dels=0.00;FS=22.181;HaplotypeScore=8.3557;MLEAC=1;MLEAF=0.500;MQ=40.78;MQ0=2;MQRankSum=-7.045;QD=5.80;ReadPosRankSum=-0.440;SB=-1.028e+03 GT:AD:DP:GQ:PL 0/1:121,275:398:99:2340,0,1966 chrXIII 919796 . A T 2396.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.839;DP=408;Dels=0.00;FS=13.259;HaplotypeScore=9.0111;MLEAC=1;MLEAF=0.500;MQ=31.68;MQ0=12;MQRankSum=-6.959;QD=5.87;ReadPosRankSum=0.282;SB=-2.214e+03 GT:AD:DP:GQ:PL 0/1:118,290:408:99:2426,0,1951 chrXIII 919810 . G A 2481.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.010;DP=376;Dels=0.00;FS=11.324;HaplotypeScore=7.4779;MLEAC=1;MLEAF=0.500;MQ=29.78;MQ0=14;MQRankSum=-5.131;QD=6.60;ReadPosRankSum=1.478;SB=-1.480e+03 GT:AD:DP:GQ:PL 0/1:111,265:376:99:2511,0,1632 chrXIII 919828 . A C 2828.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.136;DP=372;Dels=0.00;FS=28.316;HaplotypeScore=12.9775;MLEAC=1;MLEAF=0.500;MQ=27.12;MQ0=22;MQRankSum=-2.793;QD=7.60;ReadPosRankSum=0.993;SB=-1.110e+03 GT:AD:DP:GQ:PL 0/1:109,260:372:99:2858,0,1499 chrXIII 920279 . G A 1183.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.186;DP=550;Dels=0.00;FS=26.624;HaplotypeScore=28.7937;MLEAC=1;MLEAF=0.500;MQ=25.12;MQ0=147;MQRankSum=4.971;QD=2.15;ReadPosRankSum=2.589;SB=-2.240e+02 GT:AD:DP:GQ:PL 0/1:417,131:550:99:1213,0,5535 chrXIII 920280 . G A 1230.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.223;DP=562;Dels=0.00;FS=31.514;HaplotypeScore=32.6824;MLEAC=1;MLEAF=0.500;MQ=25.47;MQ0=142;MQRankSum=3.884;QD=2.19;ReadPosRankSum=2.388;SB=-1.860e+02 GT:AD:DP:GQ:PL 0/1:423,132:562:99:1260,0,5872 chrXIII 920286 . A T 1556.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;DP=606;Dels=0.00;FS=20.919;HaplotypeScore=33.6147;MLEAC=1;MLEAF=0.500;MQ=26.64;MQ0=127;MQRankSum=1.945;QD=2.57;ReadPosRankSum=1.180;SB=-2.350e+02 GT:AD:DP:GQ:PL 0/1:453,152:606:99:1586,0,6601 chrXIII 921028 . T C 15495.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.107;DP=703;Dels=0.00;FS=10.618;HaplotypeScore=44.8631;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;MQRankSum=2.815;QD=22.04;ReadPosRankSum=4.131;SB=-7.033e+03 GT:AD:DP:GQ:PL 1/1:6,694:703:99:15495,1723,0 chrXIII 921577 . G C 216.01 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.42;MQ0=118;QD=1.67;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,126:129:27:249,27,0 chrXIII 922185 . G A 8455.01 filter AC=2;AF=1.00;AN=2;DP=395;Dels=0.00;FS=0.000;HaplotypeScore=21.4175;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=11;QD=21.41;SB=-4.546e+03 GT:AD:DP:GQ:PL 1/1:0,395:395:99:8455,907,0 chrXIII 922340 . G T 7504.01 filter AC=2;AF=1.00;AN=2;DP=348;Dels=0.00;FS=0.000;HaplotypeScore=27.9378;MLEAC=2;MLEAF=1.00;MQ=38.43;MQ0=6;QD=21.56;SB=-4.022e+03 GT:AD:DP:GQ:PL 1/1:0,344:348:99:7504,814,0 chrXIII 922388 . A G 11195.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.440;DP=508;Dels=0.00;FS=7.174;HaplotypeScore=12.6768;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=13;MQRankSum=0.666;QD=22.04;ReadPosRankSum=2.430;SB=-5.614e+03 GT:AD:DP:GQ:PL 1/1:2,506:508:99:11195,1260,0 chrXIII 922448 . A G 4890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.913;DP=289;Dels=0.00;FS=3.862;HaplotypeScore=16.8075;MLEAC=2;MLEAF=1.00;MQ=41.79;MQ0=2;MQRankSum=1.177;QD=16.92;ReadPosRankSum=0.675;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:14,275:289:99:4890,543,0 chrXIII 922489 . T G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.60;MQ0=0;QD=0.66;SB=-3.698e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:6:53,6,0 chrXIII 922493 . G C 66.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.33;MQ0=4;QD=1.71;SB=-3.465e+02 GT:AD:DP:GQ:PL 1/1:0,35:39:12:99,12,0 chrXIII 922496 . A C 132.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.14;MQ0=5;QD=2.75;SB=-3.351e+02 GT:AD:DP:GQ:PL 1/1:0,44:48:18:165,18,0 chrXIII 922883 . C T 16421.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.147;DP=772;Dels=0.00;FS=2.703;HaplotypeScore=51.0051;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=13;MQRankSum=-0.788;QD=21.27;ReadPosRankSum=1.900;SB=-6.966e+03 GT:AD:DP:GQ:PL 1/1:2,768:772:99:16421,1804,0 chrXIII 923157 . G A 7348.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=11.9924;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=21.05;SB=-3.458e+03 GT:AD:DP:GQ:PL 1/1:0,345:349:99:7348,784,0 chrXIII 923163 . G A 6494.01 PASS AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=3.5605;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.27;SB=-3.366e+03 GT:AD:DP:GQ:PL 1/1:0,336:337:99:6494,711,0 chrXIII 923430 . A G 7193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=320;Dels=0.00;FS=2.887;HaplotypeScore=9.7989;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=1;MQRankSum=-0.573;QD=22.48;ReadPosRankSum=2.403;SB=-3.402e+03 GT:AD:DP:GQ:PL 1/1:2,318:320:99:7193,795,0 chrXIII 923451 . T A 6803.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=313;Dels=0.00;FS=7.019;HaplotypeScore=20.2200;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=1;MQRankSum=-0.075;QD=21.73;ReadPosRankSum=0.917;SB=-3.360e+03 GT:AD:DP:GQ:PL 1/1:2,311:313:99:6803,730,0 chrXIII 923598 . G T 825.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.547;DP=370;Dels=0.00;FS=2.517;HaplotypeScore=21.9556;MLEAC=1;MLEAF=0.500;MQ=51.91;MQ0=0;MQRankSum=-10.517;QD=2.23;ReadPosRankSum=-1.510;SB=-7.220e+02 GT:AD:DP:GQ:PL 0/1:258,109:370:99:855,0,5401 chrXIII 923602 . T G 670.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-10.995;DP=359;Dels=0.00;FS=5.531;HaplotypeScore=17.7528;MLEAC=1;MLEAF=0.500;MQ=51.47;MQ0=0;MQRankSum=-12.461;QD=1.87;ReadPosRankSum=-0.490;SB=-6.310e+02 GT:AD:DP:GQ:PL 0/1:256,100:358:99:700,0,5869 chrXIII 923606 . A T 818.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DP=348;Dels=0.00;FS=0.918;HaplotypeScore=17.8595;MLEAC=1;MLEAF=0.500;MQ=51.18;MQ0=0;MQRankSum=-13.117;QD=2.35;ReadPosRankSum=-0.903;SB=-6.600e+02 GT:AD:DP:GQ:PL 0/1:248,100:348:99:848,0,5429 chrXIII 923613 . G T 840.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.365;DP=365;Dels=0.00;FS=0.000;HaplotypeScore=16.9415;MLEAC=1;MLEAF=0.500;MQ=50.96;MQ0=0;MQRankSum=-13.064;QD=2.30;ReadPosRankSum=-0.485;SB=-6.330e+02 GT:AD:DP:GQ:PL 0/1:259,106:365:99:870,0,5456 chrXIII 923621 . A G 677.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;DP=371;Dels=0.00;FS=1.969;HaplotypeScore=17.8281;MLEAC=1;MLEAF=0.500;MQ=50.55;MQ0=0;MQRankSum=-13.924;QD=1.82;ReadPosRankSum=0.538;SB=-5.290e+02 GT:AD:DP:GQ:PL 0/1:267,104:371:99:707,0,5555 chrXIII 923623 . C A 755.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.539;DP=377;Dels=0.00;FS=0.896;HaplotypeScore=102.4215;MLEAC=1;MLEAF=0.500;MQ=50.35;MQ0=0;MQRankSum=-13.875;QD=2.00;ReadPosRankSum=0.780;SB=-5.430e+02 GT:AD:DP:GQ:PL 0/1:272,105:377:99:785,0,5621 chrXIII 923629 . A T 691.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;DP=395;Dels=0.00;FS=4.460;HaplotypeScore=105.7429;MLEAC=1;MLEAF=0.500;MQ=49.65;MQ0=0;MQRankSum=-14.185;QD=1.75;ReadPosRankSum=0.913;SB=-5.040e+02 GT:AD:DP:GQ:PL 0/1:284,111:395:99:721,0,6104 chrXIII 923636 . C A 571.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.648;DP=395;Dels=0.00;FS=2.452;HaplotypeScore=13.5575;MLEAC=1;MLEAF=0.500;MQ=49.22;MQ0=0;MQRankSum=-14.186;QD=1.45;ReadPosRankSum=0.228;SB=-5.320e+02 GT:AD:DP:GQ:PL 0/1:282,113:395:99:601,0,5542 chrXIII 923652 . T G 4990.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DP=403;Dels=0.00;FS=4.052;HaplotypeScore=8.1325;MLEAC=1;MLEAF=0.500;MQ=46.21;MQ0=1;MQRankSum=11.419;QD=12.38;ReadPosRankSum=2.819;SB=-2.484e+03 GT:AD:DP:GQ:PL 0/1:137,265:403:99:4990,0,841 chrXIII 923654 . T C 5045.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.163;DP=406;Dels=0.00;FS=4.730;HaplotypeScore=9.2313;MLEAC=1;MLEAF=0.500;MQ=46.37;MQ0=1;MQRankSum=11.727;QD=12.43;ReadPosRankSum=2.586;SB=-2.549e+03 GT:AD:DP:GQ:PL 0/1:139,266:406:99:5045,0,869 chrXIII 923655 . G A 831.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.944;DP=400;Dels=0.00;FS=3.512;HaplotypeScore=11.6481;MLEAC=1;MLEAF=0.500;MQ=46.32;MQ0=1;MQRankSum=-12.189;QD=2.08;ReadPosRankSum=-1.326;SB=-7.920e+02 GT:AD:DP:GQ:PL 0/1:271,127:400:99:861,0,4942 chrXIII 923668 . T C 791.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.185;DP=456;Dels=0.00;FS=0.000;HaplotypeScore=67.8737;MLEAC=1;MLEAF=0.500;MQ=44.70;MQ0=2;MQRankSum=-9.715;QD=1.73;ReadPosRankSum=2.448;SB=-7.080e+02 GT:AD:DP:GQ:PL 0/1:337,118:456:99:821,0,5923 chrXIII 923675 . C T 1431.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.086;DP=481;Dels=0.00;FS=2.098;HaplotypeScore=96.2556;MLEAC=1;MLEAF=0.500;MQ=43.08;MQ0=4;MQRankSum=-10.750;QD=2.98;ReadPosRankSum=-0.004;SB=-9.100e+02 GT:AD:DP:GQ:PL 0/1:327,153:481:99:1461,0,5463 chrXIII 923677 . T G 367.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;DP=493;Dels=0.00;FS=5.987;HaplotypeScore=97.2221;MLEAC=1;MLEAF=0.500;MQ=42.73;MQ0=4;MQRankSum=-7.803;QD=0.74;ReadPosRankSum=6.156;SB=-6.520e+02 GT:AD:DP:GQ:PL 0/1:393,100:493:99:397,0,6820 chrXIII 923678 . G A 441.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.789;DP=504;Dels=0.00;FS=6.690;HaplotypeScore=98.0108;MLEAC=1;MLEAF=0.500;MQ=42.70;MQ0=5;MQRankSum=-6.924;QD=0.88;ReadPosRankSum=5.849;SB=-7.630e+02 GT:AD:DP:GQ:PL 0/1:395,102:504:99:471,0,6872 chrXIII 923682 . T C 383.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;DP=528;Dels=0.00;FS=14.564;HaplotypeScore=93.7395;MLEAC=1;MLEAF=0.500;MQ=42.08;MQ0=7;MQRankSum=-7.013;QD=0.73;ReadPosRankSum=4.846;SB=-7.140e+02 GT:AD:DP:GQ:PL 0/1:420,108:528:99:413,0,7416 chrXIII 923707 . G A 7849.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.207;DP=604;Dels=0.00;FS=0.689;HaplotypeScore=216.6598;MLEAC=1;MLEAF=0.500;MQ=40.17;MQ0=17;MQRankSum=6.607;QD=13.00;ReadPosRankSum=-1.617;SB=-3.437e+03 GT:AD:DP:GQ:PL 0/1:191,408:604:99:7849,0,2178 chrXIII 923710 . G A 401.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.617;DP=609;Dels=0.00;FS=60.371;HaplotypeScore=244.2049;MLEAC=1;MLEAF=0.500;MQ=39.87;MQ0=19;MQRankSum=-6.492;QD=0.66;ReadPosRankSum=4.762;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:524,77:609:99:431,0,8858 chrXIII 923711 . C T 244.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.554;DP=603;Dels=0.00;FS=57.067;HaplotypeScore=247.3596;MLEAC=1;MLEAF=0.500;MQ=39.70;MQ0=20;MQRankSum=-0.226;QD=0.40;ReadPosRankSum=-3.322;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:497,105:603:99:274,0,9203 chrXIII 923712 . T C 950.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.526;DP=614;Dels=0.00;FS=38.899;HaplotypeScore=246.5709;MLEAC=1;MLEAF=0.500;MQ=39.59;MQ0=21;MQRankSum=-4.871;QD=1.55;ReadPosRankSum=1.456;SB=-5.230e+02 GT:AD:DP:GQ:PL 0/1:476,138:614:99:980,0,8647 chrXIII 923794 . G A 4174.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;DP=844;Dels=0.00;FS=4.975;HaplotypeScore=74.6253;MLEAC=1;MLEAF=0.500;MQ=35.63;MQ0=17;MQRankSum=-6.250;QD=4.95;ReadPosRankSum=1.072;SB=-1.267e+03 GT:AD:DP:GQ:PL 0/1:543,286:844:99:4174,0,10089 chrXIII 923916 . A G 12968.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.165;DP=831;DS;Dels=0.00;FS=0.000;HaplotypeScore=190.4784;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=42;MQRankSum=5.489;QD=15.61;ReadPosRankSum=-1.836;SB=-6.886e+03 GT:AD:DP:GQ:PL 1/1:75,699:831:99:12968,1133,0 chrXIII 923934 . A G,T 10848.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.168;DP=753;DS;Dels=0.00;FS=2.771;HaplotypeScore=14.1093;MLEAC=1,1;MLEAF=0.500,0.500;MQ=26.76;MQ0=44;MQRankSum=-0.275;QD=14.41;ReadPosRankSum=2.802;SB=-4.310e+03 GT:AD:DP:GQ:PL 1/2:7,448,298:753:99:10848,5412,4787,5389,0,4775 chrXIII 923948 . A T 10576.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=678;DS;Dels=0.00;FS=0.000;HaplotypeScore=293.3567;MLEAC=2;MLEAF=1.00;MQ=25.90;MQ0=44;MQRankSum=-0.896;QD=15.60;ReadPosRankSum=1.727;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:1,677:678:99:10576,1158,0 chrXIII 923983 . G A 1735.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.601;DP=614;Dels=0.00;FS=22.625;HaplotypeScore=103.9175;MLEAC=1;MLEAF=0.500;MQ=25.56;MQ0=31;MQRankSum=10.933;QD=2.83;ReadPosRankSum=0.382;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:461,152:614:99:1765,0,4371 chrXIII 923984 . T C 3886.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;DP=606;Dels=0.00;FS=19.769;HaplotypeScore=103.9038;MLEAC=1;MLEAF=0.500;MQ=25.73;MQ0=30;MQRankSum=0.059;QD=6.41;ReadPosRankSum=1.878;SB=-1.070e+02 GT:AD:DP:GQ:PL 0/1:202,403:606:99:3886,0,1988 chrXIII 923987 . G A 6950.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=7.332;DP=597;Dels=0.00;FS=3.444;HaplotypeScore=99.6599;MLEAC=2;MLEAF=1.00;MQ=25.78;MQ0=28;MQRankSum=0.771;QD=11.64;ReadPosRankSum=3.084;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:37,560:597:99:6950,533,0 chrXIII 924010 . G A 1358.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.996;DP=661;Dels=0.00;FS=0.000;HaplotypeScore=9.9694;MLEAC=1;MLEAF=0.500;MQ=26.73;MQ0=9;MQRankSum=8.701;QD=2.05;ReadPosRankSum=-0.024;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:519,142:661:99:1388,0,6487 chrXIII 924023 . T C 10139.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.087;DP=630;Dels=0.00;FS=0.000;HaplotypeScore=35.9229;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=5;MQRankSum=2.873;QD=16.09;ReadPosRankSum=0.298;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:15,615:630:99:10139,1136,0 chrXIII 924024 . A G 6811.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.017;DP=635;Dels=0.00;FS=0.000;HaplotypeScore=35.9229;MLEAC=1;MLEAF=0.500;MQ=27.33;MQ0=5;MQRankSum=1.391;QD=10.73;ReadPosRankSum=3.923;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:167,468:635:99:6811,0,1439 chrXIII 924029 . A G 10427.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.337;DP=663;Dels=0.01;FS=0.000;HaplotypeScore=33.8652;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=5;MQRankSum=2.295;QD=15.73;ReadPosRankSum=5.422;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:12,644:656:99:10427,1161,0 chrXIII 924037 . G C 11234.01 filter AC=2;AF=1.00;AN=2;DP=694;Dels=0.00;FS=0.000;HaplotypeScore=10.1417;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=4;QD=16.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,692:694:99:11234,1269,0 chrXIII 924046 . G A 1403.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.372;DP=714;Dels=0.00;FS=0.000;HaplotypeScore=7.9312;MLEAC=1;MLEAF=0.500;MQ=27.78;MQ0=5;MQRankSum=4.459;QD=1.96;ReadPosRankSum=2.019;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:572,142:714:99:1433,0,7916 chrXIII 924055 . C G 1469.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.825;DP=701;Dels=0.00;FS=0.000;HaplotypeScore=14.0710;MLEAC=1;MLEAF=0.500;MQ=27.73;MQ0=6;MQRankSum=4.498;QD=2.10;ReadPosRankSum=2.024;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:557,144:701:99:1499,0,8148 chrXIII 924057 . G C 1366.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.229;DP=716;Dels=0.00;FS=0.000;HaplotypeScore=12.1501;MLEAC=1;MLEAF=0.500;MQ=27.73;MQ0=6;MQRankSum=4.395;QD=1.91;ReadPosRankSum=2.569;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:571,144:716:99:1396,0,8794 chrXIII 924060 . G A 1395.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.634;DP=717;Dels=0.00;FS=0.000;HaplotypeScore=12.2781;MLEAC=1;MLEAF=0.500;MQ=27.57;MQ0=7;MQRankSum=7.434;QD=1.95;ReadPosRankSum=2.317;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:572,144:717:99:1425,0,8507 chrXIII 924072 . A G 11152.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.400;DP=633;Dels=0.00;FS=0.000;HaplotypeScore=20.3500;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=8;MQRankSum=4.881;QD=17.62;ReadPosRankSum=5.796;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:15,617:633:99:11152,1253,0 chrXIII 924074 . G T 11269.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=620;Dels=0.00;FS=0.000;HaplotypeScore=9.2852;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=7;QD=18.18;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,620:620:99:11269,1269,0 chrXIII 924078 . A G 11037.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.817;DP=649;Dels=0.00;FS=0.000;HaplotypeScore=6.4529;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=9;MQRankSum=-1.327;QD=17.01;ReadPosRankSum=4.827;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:8,640:649:99:11037,1259,0 chrXIII 924091 . G A 7295.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.693;DP=670;Dels=0.00;FS=41.440;HaplotypeScore=41.0851;MLEAC=1;MLEAF=0.500;MQ=26.79;MQ0=15;MQRankSum=-4.497;QD=10.89;ReadPosRankSum=-0.678;SB=-7.260e+02 GT:AD:DP:GQ:PL 0/1:122,545:670:99:7295,0,681 chrXIII 924093 . A G 561.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.413;DP=678;Dels=0.00;FS=52.731;HaplotypeScore=46.9790;MLEAC=1;MLEAF=0.500;MQ=26.58;MQ0=15;MQRankSum=6.145;QD=0.83;ReadPosRankSum=2.287;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:570,107:678:99:591,0,7190 chrXIII 924098 . A G 380.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.213;DP=633;Dels=0.00;FS=59.840;HaplotypeScore=35.3928;MLEAC=1;MLEAF=0.500;MQ=26.54;MQ0=15;MQRankSum=6.106;QD=0.60;ReadPosRankSum=1.238;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:534,98:633:99:410,0,6676 chrXIII 924102 . G A 436.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.128;DP=597;Dels=0.00;FS=57.937;HaplotypeScore=19.5972;MLEAC=1;MLEAF=0.500;MQ=26.15;MQ0=21;MQRankSum=3.907;QD=0.73;ReadPosRankSum=0.737;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:506,87:597:99:466,0,5945 chrXIII 924114 . T G 107.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.085;DP=510;Dels=0.00;FS=56.960;HaplotypeScore=8.7382;MLEAC=1;MLEAF=0.500;MQ=25.49;MQ0=23;MQRankSum=4.756;QD=0.21;ReadPosRankSum=-2.312;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:444,66:510:99:137,0,5461 chrXIII 924136 . C G 4216.01 filter AC=2;AF=1.00;AN=2;DP=356;Dels=0.00;FS=0.000;HaplotypeScore=38.2142;MLEAC=2;MLEAF=1.00;MQ=24.53;MQ0=21;QD=11.84;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,350:356:99:4216,497,0 chrXIII 924155 . C G 2432 filter AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=94.4205;MLEAC=2;MLEAF=1.00;MQ=22.54;MQ0=22;QD=9.81;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,215:248:99:2465,296,0 chrXIII 924175 . G A 806.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.563;DP=152;Dels=0.00;FS=71.305;HaplotypeScore=43.2285;MLEAC=1;MLEAF=0.500;MQ=21.43;MQ0=13;MQRankSum=-2.213;QD=5.30;ReadPosRankSum=-7.059;SB=-4.820e+02 GT:AD:DP:GQ:PL 0/1:42,109:152:56:836,0,56 chrXIII 924183 . C T 299 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=53.4606;MLEAC=2;MLEAF=1.00;MQ=21.92;MQ0=12;QD=3.56;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,76:84:39:332,39,0 chrXIII 924196 . G T 166.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.880;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=24.1830;MLEAC=2;MLEAF=1.00;MQ=24.00;MQ0=6;MQRankSum=-0.590;QD=2.77;ReadPosRankSum=-1.347;SB=-7.406e+01 GT:AD:DP:GQ:PL 1/1:10,50:60:21:199,21,0 chrXIII 924217 . G T 69.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.239;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=58.3167;MLEAC=2;MLEAF=1.00;MQ=25.79;MQ0=0;MQRankSum=1.315;QD=1.48;ReadPosRankSum=2.025;SB=-2.051e+01 GT:AD:DP:GQ:PL 1/1:14,9:47:12:102,12,0 chrXIII 924218 . A G 55.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.750;DP=48;Dels=0.02;FS=3.904;HaplotypeScore=42.2137;MLEAC=1;MLEAF=0.500;MQ=25.86;MQ0=0;MQRankSum=2.591;QD=1.15;ReadPosRankSum=1.050;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:34,10:47:61:85,0,61 chrXIII 924224 . C G 210.01 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=22.7452;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=0;QD=4.57;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:27:243,27,0 chrXIII 924239 . G A 74.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.615;DP=44;Dels=0.00;FS=8.424;HaplotypeScore=8.0103;MLEAC=1;MLEAF=0.500;MQ=27.07;MQ0=0;MQRankSum=0.193;QD=1.68;ReadPosRankSum=0.940;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:27,17:44:75:104,0,75 chrXIII 924242 . A G 151.50 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.093;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=9.9684;MLEAC=1;MLEAF=0.500;MQ=27.07;MQ0=0;MQRankSum=1.831;QD=3.44;ReadPosRankSum=1.645;SB=-2.651e+01 GT:AD:DP:GQ:PL 1/1:2,38:44:21:183,21,0 chrXIII 924243 . A T 68.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;DP=44;Dels=0.00;FS=8.558;HaplotypeScore=9.9684;MLEAC=1;MLEAF=0.500;MQ=27.07;MQ0=0;MQRankSum=0.842;QD=1.55;ReadPosRankSum=1.541;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:26,16:44:98:98,0,101 chrXIII 924252 . C T 218 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=7.4807;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=0;QD=5.45;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:30:251,30,0 chrXIII 924264 . A T 212 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=12.5483;MLEAC=2;MLEAF=1.00;MQ=24.85;MQ0=0;QD=5.89;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:30:245,30,0 chrXIII 924266 . G A 59.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.322;DP=39;Dels=0.00;FS=18.274;HaplotypeScore=10.5722;MLEAC=1;MLEAF=0.500;MQ=24.33;MQ0=0;MQRankSum=-1.930;QD=1.51;ReadPosRankSum=0.852;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,8:39:89:89,0,114 chrXIII 924277 . G T 218 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=65.5933;MLEAC=2;MLEAF=1.00;MQ=21.88;MQ0=0;QD=6.23;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:33:251,33,0 chrXIII 924391 . G A 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.142;DP=69;Dels=0.03;FS=0.000;HaplotypeScore=76.5816;MLEAC=1;MLEAF=0.500;MQ=20.80;MQ0=7;MQRankSum=-0.750;QD=0.46;ReadPosRankSum=-0.228;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,8:67:62:62,0,233 chrXIII 924409 . G A 83.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.528;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=53.4464;MLEAC=1;MLEAF=0.500;MQ=19.33;MQ0=5;MQRankSum=-0.176;QD=1.57;ReadPosRankSum=2.393;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,10:52:99:113,0,134 chrXIV 6781 . C A 46.31 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=20.7689;MLEAC=1;MLEAF=0.500;MQ=25.59;MQ0=2;QD=0.96;SB=15.68 GT:AD:DP:GQ:PL 1/1:0,17:48:9:78,9,0 chrXIV 6786 . C T 66.34 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.609;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=19.7627;MLEAC=1;MLEAF=0.500;MQ=25.24;MQ0=2;MQRankSum=-1.718;QD=1.30;ReadPosRankSum=2.069;SB=-2.234e+01 GT:AD:DP:GQ:PL 0/1:8,43:51:8:96,0,8 chrXIV 6844 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=5.8335;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=0;QD=2.60;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:52,6,0 chrXIV 6848 . T C 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=12;Dels=0.00;FS=28.987;HaplotypeScore=2.9410;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=0;MQRankSum=0.380;QD=1.90;ReadPosRankSum=2.793;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:5,7:12:6:54,6,0 chrXIV 6875 . A T 132.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.401;DP=13;Dels=0.00;FS=3.358;HaplotypeScore=5.9346;MLEAC=2;MLEAF=1.00;MQ=26.44;MQ0=0;MQRankSum=0.668;QD=10.16;ReadPosRankSum=0.668;SB=-6.588e+01 GT:AD:DP:GQ:PL 1/1:1,12:13:18:165,18,0 chrXIV 6885 . T C 98.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.508;DP=16;Dels=0.00;FS=3.468;HaplotypeScore=24.1548;MLEAC=2;MLEAF=1.00;MQ=22.87;MQ0=0;MQRankSum=-0.079;QD=6.14;ReadPosRankSum=1.350;SB=-3.801e+01 GT:AD:DP:GQ:PL 1/1:2,14:16:15:131,15,0 chrXIV 6906 . G C 100.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=20.55;MQ0=1;MQRankSum=-0.289;QD=3.86;ReadPosRankSum=1.156;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:1,25:26:15:133,15,0 chrXIV 6924 . A G 82.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;DP=36;Dels=0.00;FS=5.515;HaplotypeScore=7.1442;MLEAC=1;MLEAF=0.500;MQ=20.40;MQ0=1;MQRankSum=0.347;QD=2.28;ReadPosRankSum=0.935;SB=-9.749e+01 GT:AD:DP:GQ:PL 0/1:4,32:36:22:112,0,22 chrXIV 6941 . T A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=9.0800;MLEAC=2;MLEAF=1.00;MQ=18.06;MQ0=1;MQRankSum=-1.902;QD=0.31;ReadPosRankSum=3.223;SB=-6.376e+01 GT:AD:DP:GQ:PL 1/1:6,33:39:6:43,6,0 chrXIV 6964 . A G 111.13 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=17.41;MQ0=1;QD=3.18;SB=-2.212e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:18:144,18,0 chrXIV 6982 . T C 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670;DP=29;Dels=0.00;FS=12.357;HaplotypeScore=2.7789;MLEAC=1;MLEAF=0.500;MQ=18.10;MQ0=1;MQRankSum=-0.280;QD=1.79;ReadPosRankSum=2.873;SB=-1.338e-02 GT:AD:DP:GQ:PL 0/1:21,8:29:25:82,0,25 chrXIV 7030 . T A 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.355;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=3.9729;MLEAC=1;MLEAF=0.500;MQ=20.68;MQ0=0;MQRankSum=0.412;QD=3.87;ReadPosRankSum=1.709;SB=0.406 GT:AD:DP:GQ:PL 0/1:9,6:15:38:88,0,38 chrXIV 7037 . G A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;DP=5;Dels=0.00;FS=3.979;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=23.65;MQ0=0;MQRankSum=1.231;QD=4.96;ReadPosRankSum=1.231;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:2,3:5:6:56,6,0 chrXIV 7057 . T C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.20;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:52,6,0 chrXIV 7058 . A C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.45;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:53,6,0 chrXIV 7080 . C T 13.32 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.37;MQ0=0;MQRankSum=0.736;QD=2.22;ReadPosRankSum=0.736;SB=0.674 GT:AD:DP:GQ:PL 0/1:1,5:6:13:43,0,13 chrXIV 7088 . C A 16.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=8.6986;MLEAC=1;MLEAF=0.500;MQ=27.37;MQ0=0;MQRankSum=0.736;QD=2.70;ReadPosRankSum=0.736;SB=0.674 GT:AD:DP:GQ:PL 0/1:1,5:6:13:46,0,13 chrXIV 7144 . A G 63.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.615;DP=40;Dels=0.00;FS=7.309;HaplotypeScore=10.3906;MLEAC=2;MLEAF=1.00;MQ=17.01;MQ0=4;MQRankSum=0.149;QD=1.59;ReadPosRankSum=2.993;SB=2.49 GT:AD:DP:GQ:PL 1/1:9,31:40:12:96,12,0 chrXIV 8892 . G A 58.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=7.25;MQ0=8;MQRankSum=-1.720;QD=0.19;ReadPosRankSum=0.234;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:5,299:304:12:91,12,0 chrXIV 8904 . G C 560 filter AC=2;AF=1.00;AN=2;DP=361;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.86;MQ0=8;QD=1.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,357:361:78:593,78,0 chrXIV 8986 . A G 4173.01 filter AC=2;AF=1.00;AN=2;DP=498;Dels=0.00;FS=0.000;HaplotypeScore=5.4130;MLEAC=2;MLEAF=1.00;MQ=24.73;MQ0=14;QD=8.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,497:498:99:4173,468,0 chrXIV 9010 . T C 1960 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=9.185;DP=518;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=25.67;MQ0=14;MQRankSum=-1.566;QD=3.78;ReadPosRankSum=9.346;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:32,486:518:99:1993,225,0 chrXIV 9014 . T G 1993 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.067;DP=509;Dels=0.00;FS=0.000;HaplotypeScore=16.7000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=17;MQRankSum=-1.154;QD=3.92;ReadPosRankSum=9.591;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:43,466:509:99:2026,231,0 chrXIV 9017 . T C 2160 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.208;DP=470;Dels=0.00;FS=0.000;HaplotypeScore=18.2774;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=8;MQRankSum=1.870;QD=4.60;ReadPosRankSum=9.664;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:38,432:470:99:2193,252,0 chrXIV 9019 . A C 2290 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.336;DP=488;Dels=0.00;FS=0.000;HaplotypeScore=26.1095;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=8;MQRankSum=-0.191;QD=4.69;ReadPosRankSum=8.970;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:37,442:488:99:2323,270,0 chrXIV 9398 . G A 2790.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.780;DP=712;Dels=0.00;FS=60.893;HaplotypeScore=33.3067;MLEAC=1;MLEAF=0.500;MQ=27.81;MQ0=99;MQRankSum=-1.519;QD=3.92;ReadPosRankSum=0.958;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:410,300:712:99:2820,0,6752 chrXIV 9430 . T C 2653.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.534;DP=704;Dels=0.00;FS=111.053;HaplotypeScore=35.8601;MLEAC=1;MLEAF=0.500;MQ=26.96;MQ0=77;MQRankSum=-0.268;QD=3.77;ReadPosRankSum=0.204;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:427,276:704:99:2683,0,6322 chrXIV 9485 . C G 2105.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.879;DP=518;Dels=0.00;FS=233.367;HaplotypeScore=40.3169;MLEAC=1;MLEAF=0.500;MQ=23.27;MQ0=114;MQRankSum=4.170;QD=4.06;ReadPosRankSum=-1.267;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:289,220:518:99:2135,0,2329 chrXIV 9529 . A T 705.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.542;DP=442;Dels=0.00;FS=25.459;HaplotypeScore=48.3041;MLEAC=1;MLEAF=0.500;MQ=20.16;MQ0=208;MQRankSum=-2.286;QD=1.60;ReadPosRankSum=2.251;SB=-1.880e+02 GT:AD:DP:GQ:PL 0/1:266,176:442:99:735,0,1671 chrXIV 9739 . A G 2815 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.781;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=21.34;MQ0=95;MQRankSum=2.724;QD=11.35;ReadPosRankSum=3.689;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:5,243:248:99:2848,318,0 chrXIV 9744 . A G 2455.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.093;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=21.88;MQ0=102;MQRankSum=1.445;QD=8.74;ReadPosRankSum=-3.605;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:42,239:281:66:2485,0,66 chrXIV 9930 . A G 3364.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.112;DP=191;Dels=0.00;FS=65.324;HaplotypeScore=7.8772;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=44;MQRankSum=2.145;QD=17.61;ReadPosRankSum=4.082;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:6,180:191:99:3364,372,0 chrXIV 10172 . G A 1529 filter AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=46;QD=10.77;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1562,177,0 chrXIV 10233 . C T 583 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.17;MQ0=14;QD=9.56;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:72:616,72,0 chrXIV 10272 . G A 1649 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=3;QD=19.17;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1682,186,0 chrXIV 10439 . G A 263 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.39;MQ0=33;QD=5.60;SB=-8.689e-03 GT:AD:DP:GQ:PL 1/1:0,46:47:33:296,33,0 chrXIV 10441 . A G 259 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=15.49;MQ0=34;QD=5.29;SB=-8.689e-03 GT:AD:DP:GQ:PL 1/1:1,48:49:33:292,33,0 chrXIV 10478 . A C 518 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=21.73;MQ0=36;QD=7.85;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:63:551,63,0 chrXIV 10567 . A G 2554 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=149;Dels=0.00;FS=21.192;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=25;MQRankSum=0.172;QD=17.14;ReadPosRankSum=2.910;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:5,144:149:99:2587,294,0 chrXIV 10574 . A C 2235 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=144;Dels=0.03;FS=5.032;HaplotypeScore=9.2082;MLEAC=2;MLEAF=1.00;MQ=41.89;MQ0=23;MQRankSum=0.662;QD=15.52;ReadPosRankSum=0.557;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:4,136:140:99:2268,261,0 chrXIV 10660 . T C 469 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.04;MQ0=15;QD=10.91;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:57:502,57,0 chrXIV 10666 . T G 464 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.91;MQ0=13;QD=10.09;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:57:497,57,0 chrXIV 10683 . T C 733 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=53;Dels=0.00;FS=11.035;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.06;MQ0=8;MQRankSum=1.570;QD=13.83;ReadPosRankSum=2.231;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:90:766,90,0 chrXIV 10694 . T C 872 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=65;Dels=0.00;FS=13.109;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.13;MQ0=8;MQRankSum=1.713;QD=13.42;ReadPosRankSum=2.320;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:2,63:65:99:905,102,0 chrXIV 10708 . A G 1217 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=5;QD=13.09;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,89:93:99:1250,141,0 chrXIV 10744 . G C 4018.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=17.3322;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=1;QD=19.32;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,202:208:99:4018,459,0 chrXIV 10776 . T C 5859.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.765;DP=306;Dels=0.00;FS=4.845;HaplotypeScore=7.4880;MLEAC=2;MLEAF=1.00;MQ=42.07;MQ0=0;MQRankSum=2.582;QD=19.15;ReadPosRankSum=3.832;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:5,297:306:99:5859,669,0 chrXIV 10817 . C A 5211.01 filter AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=36.66;MQ0=5;QD=17.25;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,302:302:99:5211,567,0 chrXIV 10829 . G A 3972.01 filter AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=10;QD=14.34;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:3972,462,0 chrXIV 10846 . C G 2455 filter AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=13;QD=11.31;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,217:217:99:2488,294,0 chrXIV 10855 . T G 1758 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.42;MQ0=13;MQRankSum=0.220;QD=9.88;ReadPosRankSum=1.711;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:1,177:178:99:1791,204,0 chrXIV 10888 . A G 525 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=117;Dels=0.00;FS=16.375;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=18.17;MQ0=51;MQRankSum=-1.509;QD=4.49;ReadPosRankSum=2.372;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:2,112:117:63:558,63,0 chrXIV 10959 . T C 4675.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.976;DP=321;Dels=0.00;FS=10.373;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=32.99;MQ0=34;MQRankSum=0.031;QD=14.56;ReadPosRankSum=2.955;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:3,317:321:99:4675,540,0 chrXIV 10974 . G C 5433.01 filter AC=2;AF=1.00;AN=2;DP=348;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=17;QD=15.61;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,348:348:99:5433,630,0 chrXIV 10986 . G T 5687.01 PASS AC=2;AF=1.00;AN=2;DP=347;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=2;QD=16.39;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,347:347:99:5687,633,0 chrXIV 10993 . A G 5273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=347;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=2;MQRankSum=0.726;QD=15.20;ReadPosRankSum=2.421;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:2,343:347:99:5273,597,0 chrXIV 11112 . G A 5133.01 filter AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=25.15;MQ0=31;QD=20.53;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:5133,567,0 chrXIV 11117 . T C 5264.01 filter AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=25.81;MQ0=26;QD=20.32;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:5264,594,0 chrXIV 11193 . G A 3091 filter AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=19.1774;MLEAC=2;MLEAF=1.00;MQ=24.57;MQ0=27;QD=12.77;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:3124,345,0 chrXIV 11302 . C A 1303 filter AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=7.0040;MLEAC=2;MLEAF=1.00;MQ=15.53;MQ0=82;QD=5.82;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,224:224:99:1336,153,0 chrXIV 11354 . T C 1935 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.679;DP=224;Dels=0.00;FS=15.689;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=18.44;MQ0=82;MQRankSum=-1.422;QD=8.64;ReadPosRankSum=2.807;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:3,220:224:99:1968,228,0 chrXIV 11559 . T C 1056 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=294;Dels=0.00;FS=6.981;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=12.19;MQ0=174;MQRankSum=-0.195;QD=3.59;ReadPosRankSum=2.327;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:2,291:294:99:1089,126,0 chrXIV 11976 . T A 2090 filter AC=2;AF=1.00;AN=2;DP=357;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.90;MQ0=168;QD=5.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,357:357:99:2123,240,0 chrXIV 11985 . C T 2668 filter AC=2;AF=1.00;AN=2;DP=391;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.81;MQ0=157;QD=6.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,391:391:99:2701,306,0 chrXIV 12034 . G A 3911.01 filter AC=2;AF=1.00;AN=2;DP=467;Dels=0.00;FS=0.000;HaplotypeScore=8.6258;MLEAC=2;MLEAF=1.00;MQ=16.43;MQ0=124;QD=8.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,467:467:99:3911,444,0 chrXIV 12337 . T G 452 filter AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=10.38;MQ0=154;QD=2.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,172:172:54:485,54,0 chrXIV 12453 . G A 482 filter AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.13;MQ0=176;QD=2.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,215:215:60:515,60,0 chrXIV 12487 . A G 120.13 filter AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.25;MQ0=159;QD=0.70;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:1,171:172:18:153,18,0 chrXIV 12563 . T G 417 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=142;Dels=0.00;FS=13.010;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.89;MQ0=122;MQRankSum=-1.561;QD=2.94;ReadPosRankSum=1.561;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:1,140:142:51:450,51,0 chrXIV 12576 . A G 1443 filter AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=18.29;MQ0=121;QD=7.25;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,199:199:99:1476,168,0 chrXIV 12750 . C T 1836 filter AC=2;AF=1.00;AN=2;DP=195;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=87;QD=9.42;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,188:191:99:1869,207,0 chrXIV 12751 . C T 1877 filter AC=2;AF=1.00;AN=2;DP=188;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.10;MQ0=86;QD=9.98;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,183:184:99:1910,210,0 chrXIV 12847 . T C 2471 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=244;Dels=0.00;FS=7.839;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=21.33;MQ0=90;MQRankSum=0.410;QD=10.13;ReadPosRankSum=1.618;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:1,240:244:99:2504,285,0 chrXIV 12862 . G A 3594.01 filter AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=14.3107;MLEAC=2;MLEAF=1.00;MQ=23.09;MQ0=72;QD=13.12;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,273:274:99:3594,405,0 chrXIV 12900 . G A 5617.01 filter AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=25.69;MQ0=17;QD=20.35;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:5617,633,0 chrXIV 12930 . G A 4227.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=24.46;MQ0=0;QD=21.35;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4227,480,0 chrXIV 12941 . A G 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.686;DP=176;Dels=0.00;FS=5.333;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.40;MQ0=0;MQRankSum=0.663;QD=19.72;ReadPosRankSum=2.937;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:3470,396,0 chrXIV 12971 . A G 1247 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.110;DP=77;Dels=0.00;FS=5.385;HaplotypeScore=17.7634;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=5;MQRankSum=2.004;QD=16.19;ReadPosRankSum=3.208;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:4,73:77:99:1280,150,0 chrXIV 13008 . G A 159.06 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.00;MQ0=41;QD=3.06;SB=-8.281e+01 GT:AD:DP:GQ:PL 1/1:0,51:52:21:192,21,0 chrXIV 13011 . C T 123.13 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.04;MQ0=50;QD=1.99;SB=-7.963e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:18:156,18,0 chrXIV 13115 . T A,G 732.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.183;DP=158;Dels=0.00;FS=28.987;HaplotypeScore=3.1000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=14.86;MQ0=89;MQRankSum=0.382;QD=4.63;ReadPosRankSum=3.483;SB=0.259 GT:AD:DP:GQ:PL 1/2:5,140,13:158:75:792,156,75,636,0,615 chrXIV 13164 . T C 375 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=13.26;MQ0=60;QD=3.99;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:48:408,48,0 chrXIV 13181 . T C 288 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.83;MQ0=44;QD=4.36;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:36:321,36,0 chrXIV 13209 . G T 183.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.48;MQ0=15;QD=7.32;SB=-1.098e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:27:216,27,0 chrXIV 13213 . C T 101.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.15;MQ0=9;QD=7.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:15:134,15,0 chrXIV 13218 . A G 101.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.11;MQ0=5;QD=10.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,6:10:15:134,15,0 chrXIV 13968 . T C 2089 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=184;Dels=0.00;FS=4.688;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.36;MQ0=81;MQRankSum=0.320;QD=11.35;ReadPosRankSum=1.665;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,183:184:99:2122,240,0 chrXIV 13989 . A G 5595.01 filter AC=2;AF=1.00;AN=2;DP=385;Dels=0.00;FS=0.000;HaplotypeScore=25.3811;MLEAC=2;MLEAF=1.00;MQ=31.50;MQ0=80;QD=14.53;SB=-2.633e+03 GT:AD:DP:GQ:PL 1/1:0,379:385:99:5595,654,0 chrXIV 14062 . A G 13209.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=633;Dels=0.00;FS=0.000;HaplotypeScore=23.9780;MLEAC=2;MLEAF=1.00;MQ=34.26;MQ0=33;MQRankSum=-1.178;QD=20.87;ReadPosRankSum=1.726;SB=-7.654e+03 GT:AD:DP:GQ:PL 1/1:1,632:633:99:13209,1482,0 chrXIV 14353 . A G 125.13 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.29;MQ0=48;QD=2.23;SB=-7.288e+01 GT:AD:DP:GQ:PL 1/1:0,54:56:18:158,18,0 chrXIV 14438 . C G 204.01 filter AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.55;MQ0=217;QD=0.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,239:240:27:237,27,0 chrXIV 15095 . T C 826.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.781;DP=563;Dels=0.00;FS=0.000;HaplotypeScore=15.6536;MLEAC=1;MLEAF=0.500;MQ=12.19;MQ0=384;MQRankSum=4.915;QD=1.47;ReadPosRankSum=-4.396;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:438,125:563:99:856,0,994 chrXIV 15155 . T C 4337.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.039;DP=576;Dels=0.00;FS=0.000;HaplotypeScore=19.8021;MLEAC=2;MLEAF=1.00;MQ=18.21;MQ0=306;MQRankSum=6.346;QD=7.53;ReadPosRankSum=5.777;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:320,251:576:99:4337,148,0 chrXIV 15245 . A T 2552 filter AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=12.3177;MLEAC=2;MLEAF=1.00;MQ=15.14;MQ0=161;QD=8.13;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,182:314:99:2585,306,0 chrXIV 15574 . G A 1355 filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.96;MQ0=35;QD=11.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1388,173,0 chrXIV 15593 . T C 665.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;DP=159;Dels=0.00;FS=49.965;HaplotypeScore=4.0894;MLEAC=1;MLEAF=0.500;MQ=16.95;MQ0=49;MQRankSum=-3.963;QD=4.18;ReadPosRankSum=5.969;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,90:159:99:695,0,550 chrXIV 15919 . G T 562.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.675;DP=261;Dels=0.00;FS=109.963;HaplotypeScore=7.4106;MLEAC=1;MLEAF=0.500;MQ=34.81;MQ0=49;MQRankSum=-3.513;QD=2.15;ReadPosRankSum=1.463;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:213,46:261:99:592,0,3062 chrXIV 17835 . A G 2584 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2617,291,0 chrXIV 18306 . C T 4518.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=16.3217;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.29;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4518,498,0 chrXIV 18562 . A G 4392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=198;Dels=0.00;FS=3.451;HaplotypeScore=14.3985;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.627;QD=22.18;ReadPosRankSum=1.697;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4392,501,0 chrXIV 18787 . C T 4299.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.05;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4299,465,0 chrXIV 18838 . C T 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=126;Dels=0.00;FS=3.575;HaplotypeScore=19.7629;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.619;QD=20.70;ReadPosRankSum=0.577;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2641,294,0 chrXIV 19306 . C A 3713.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3713,405,0 chrXIV 19524 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.77;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2957,327,0 chrXIV 19703 . A G 3562.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.40;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3562,399,0 chrXIV 19742 . T C 3964.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.276;DP=190;Dels=0.00;FS=13.136;HaplotypeScore=7.7819;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-0.225;QD=20.86;ReadPosRankSum=3.083;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:4,186:190:99:3964,447,0 chrXIV 19760 . A G 3597.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=19.87;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3597,417,0 chrXIV 19787 . A G 3529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=176;Dels=0.00;FS=3.032;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-0.835;QD=20.05;ReadPosRankSum=2.422;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3529,411,0 chrXIV 19918 . T C 4415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.637;DP=202;Dels=0.00;FS=16.405;HaplotypeScore=11.7656;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.293;QD=21.86;ReadPosRankSum=4.742;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:8,193:202:99:4415,504,0 chrXIV 20018 . A G 4529.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.59;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4529,534,0 chrXIV 21301 . A G 3974.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.1454;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.10;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3974,453,0 chrXIV 21401 . G A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3520,405,0 chrXIV 21451 . C A 2882 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2915,312,0 chrXIV 21949 . T C 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=145;Dels=0.00;FS=3.293;HaplotypeScore=6.2683;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.223;QD=21.92;ReadPosRankSum=1.684;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3211,360,0 chrXIV 22021 . T C 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=173;Dels=0.00;FS=6.729;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.115;QD=23.50;ReadPosRankSum=2.379;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:4065,453,0 chrXIV 22090 . C T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.1489;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.29;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3633,408,0 chrXIV 22397 . C T 4339.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.8726;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.24;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4339,471,0 chrXIV 22852 . A G 2423 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=18.50;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2456,279,0 chrXIV 22855 . A G 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.388;DP=129;Dels=0.00;FS=8.263;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=-1.480;QD=17.60;ReadPosRankSum=3.332;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:4,121:129:99:2303,270,0 chrXIV 22866 . G A 2591 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.8350;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=18.64;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2624,288,0 chrXIV 23245 . G A 4217.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.52;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:4217,462,0 chrXIV 23459 . G A 3680.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.8551;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.00;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3680,405,0 chrXIV 23540 . A G 3015 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.7537;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.65;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3048,336,0 chrXIV 23618 . A C 3697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=3.358;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.687;QD=21.88;ReadPosRankSum=1.712;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3697,414,0 chrXIV 24221 . T C 4231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=194;Dels=0.00;FS=2.780;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.414;QD=21.81;ReadPosRankSum=2.373;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4231,471,0 chrXIV 24392 . T C 3757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=174;Dels=0.00;FS=9.745;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.659;QD=21.59;ReadPosRankSum=2.379;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3757,432,0 chrXIV 24467 . C T 3985.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.58;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3985,441,0 chrXIV 24590 . C T 3616.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.43;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3616,405,0 chrXIV 24616 . G T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.96;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3306,366,0 chrXIV 24680 . A G 3683.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.41;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3683,417,0 chrXIV 24781 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.7115;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.15;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4010,435,0 chrXIV 24857 . G T 3651.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.7416;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.99;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3651,399,0 chrXIV 25137 . G A 4101.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.5139;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.14;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4101,474,0 chrXIV 25369 . T C 3869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=181;Dels=0.00;FS=5.783;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.279;QD=21.38;ReadPosRankSum=2.905;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:3,177:181:99:3869,432,0 chrXIV 25455 . G C 6600.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=16.6433;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:0,277:281:99:6600,747,0 chrXIV 25631 . A G 4929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=257;Dels=0.00;FS=5.341;HaplotypeScore=15.5377;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.621;QD=19.18;ReadPosRankSum=2.895;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:3,254:257:99:4929,576,0 chrXIV 26738 . T C 63.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=2.5769;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=7.94;SB=-4.175e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:96,12,0 chrXIV 26783 . G A 452 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=12.56;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:54:485,54,0 chrXIV 26795 . T C 948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-0.506;QD=14.58;ReadPosRankSum=1.572;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:981,111,0 chrXIV 27283 . T C 1682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.182;QD=22.13;ReadPosRankSum=1.641;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1715,195,0 chrXIV 27347 . T C 1828 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.0197;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.76;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1861,210,0 chrXIV 29547 . A G 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=13.0120;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.296;QD=22.62;ReadPosRankSum=1.710;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3597,405,0 chrXIV 32285 . A G 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=194;Dels=0.00;FS=2.875;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.248;QD=20.80;ReadPosRankSum=2.399;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4035,474,0 chrXIV 33230 . T A 656 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=16.00;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:78:689,78,0 chrXIV 33540 . A G 9586.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=417;Dels=0.00;FS=5.018;HaplotypeScore=25.6450;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.833;QD=22.99;ReadPosRankSum=1.724;SB=-3.306e+03 GT:AD:DP:GQ:PL 1/1:1,415:417:99:9586,1118,0 chrXIV 34313 . T C 1856 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=18.9844;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.94;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1889,210,0 chrXIV 34396 . T G 2573 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=24.05;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2606,288,0 chrXIV 34412 . G A 2055 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=22.34;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2088,231,0 chrXIV 34432 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=18.13;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1429,162,0 chrXIV 34467 . A G 739 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=15.40;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:87:772,87,0 chrXIV 34477 . G A 444 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=13.06;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:54:477,54,0 chrXIV 34497 . G A 483 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=11.50;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:57:516,57,0 chrXIV 34501 . G C 524 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.89;MQ0=0;QD=11.15;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,45:47:63:557,63,0 chrXIV 34569 . A C 1637 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.5806;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=18.82;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1670,189,0 chrXIV 34590 . G A 1784 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.24;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1817,195,0 chrXIV 34717 . T A 4404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.6124;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=0.396;QD=23.93;ReadPosRankSum=2.423;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4404,504,0 chrXIV 34917 . A G 7701.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=16.9905;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.20;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:0,332:332:99:7701,879,0 chrXIV 37063 . A G 4422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.235;QD=21.89;ReadPosRankSum=1.715;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:4422,495,0 chrXIV 37986 . T C 4314.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4314,486,0 chrXIV 39122 . T C 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=152;Dels=0.00;FS=2.984;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.187;QD=22.21;ReadPosRankSum=2.417;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3376,390,0 chrXIV 39457 . A T 3551.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.16;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3551,393,0 chrXIV 39652 . A G 3440.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=155;Dels=0.00;FS=2.820;HaplotypeScore=19.3053;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.609;QD=22.19;ReadPosRankSum=1.578;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3440,387,0 chrXIV 40306 . T C 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=167;Dels=0.00;FS=4.113;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.409;QD=21.68;ReadPosRankSum=1.711;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3620,402,0 chrXIV 40397 . A G 2878 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.71;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2911,330,0 chrXIV 40430 . T C 3392.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8732;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.94;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3392,384,0 chrXIV 40912 . C T 4800.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.9268;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.53;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4800,540,0 chrXIV 41146 . C T 4318.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.26;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4318,486,0 chrXIV 41188 . G A 4159.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.4443;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.23;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4159,453,0 chrXIV 41218 . C T 3907.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.68;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3907,423,0 chrXIV 41680 . C T 5266.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-2.790e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5266,576,0 chrXIV 42031 . G A 3221.02 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3254,360,0 chrXIV 42185 . G A 2822 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2855,318,0 chrXIV 42516 . A T 5979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=260;Dels=0.00;FS=6.379;HaplotypeScore=15.1790;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.826;QD=23.00;ReadPosRankSum=2.383;SB=-3.255e+03 GT:AD:DP:GQ:PL 1/1:2,258:260:99:5979,663,0 chrXIV 42594 . A T 3599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=176;Dels=0.00;FS=5.942;HaplotypeScore=11.9001;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=2.753;QD=20.45;ReadPosRankSum=2.902;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:3599,390,0 chrXIV 43912 . C T 3582.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.8906;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.45;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3582,402,0 chrXIV 44107 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0027;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.30;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2969,333,0 chrXIV 44757 . T C 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=202;Dels=0.00;FS=11.238;HaplotypeScore=15.1829;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.035;QD=21.17;ReadPosRankSum=2.965;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:3,197:202:99:4277,480,0 chrXIV 45407 . T C 2664 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2697,300,0 chrXIV 46489 . A G 2947 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.39;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2980,333,0 chrXIV 46554 . C T 2541 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.2428;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.49;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2574,282,0 chrXIV 46706 . G C 4073.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.26;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4073,459,0 chrXIV 46739 . A G 3858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=176;Dels=0.00;FS=4.649;HaplotypeScore=15.4433;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.138;QD=21.92;ReadPosRankSum=1.692;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3858,435,0 chrXIV 46813 . A G 4244.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.1858;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.11;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4244,471,0 chrXIV 46872 . A G 3992.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.4888;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.68;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3992,459,0 chrXIV 46932 . T G 4024.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4024,450,0 chrXIV 47117 . G C 2947 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4038;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.67;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2980,342,0 chrXIV 47648 . T C 2486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.888;QD=20.89;ReadPosRankSum=1.674;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2519,294,0 chrXIV 49201 . C T 2480 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.9747;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.34;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2513,273,0 chrXIV 50444 . A G 4308.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.29;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,181:185:99:4308,489,0 chrXIV 50736 . A G 3752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.110;DP=181;Dels=0.00;FS=5.099;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.266;QD=20.73;ReadPosRankSum=3.382;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:4,176:181:99:3752,417,0 chrXIV 51050 . C A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.6185;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3252,357,0 chrXIV 52069 . A G 4255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=203;Dels=0.00;FS=3.811;HaplotypeScore=11.0803;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.069;QD=20.96;ReadPosRankSum=1.663;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4255,495,0 chrXIV 52243 . C T 5218.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5218,570,0 chrXIV 52327 . T C 6359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=277;Dels=0.00;FS=3.007;HaplotypeScore=12.9800;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.273;QD=22.96;ReadPosRankSum=2.423;SB=-3.286e+03 GT:AD:DP:GQ:PL 1/1:2,272:277:99:6359,720,0 chrXIV 52659 . G T 4871.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.4549;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.88;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4871,537,0 chrXIV 52850 . C G 3863.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.99;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:3863,438,0 chrXIV 52925 . A T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=21.51;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3764,417,0 chrXIV 53152 . G A 4161.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.91;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:4161,450,0 chrXIV 53153 . C T 3957.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.30;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3957,441,0 chrXIV 53213 . C T 4494.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.7654;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.10;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4494,492,0 chrXIV 53301 . A T 4781.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.77;SB=-2.774e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4781,519,0 chrXIV 53465 . C T 4729.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.1439;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.85;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4729,519,0 chrXIV 53556 . A G 3599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=231;Dels=0.00;FS=13.589;HaplotypeScore=23.9797;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.802;QD=15.58;ReadPosRankSum=2.969;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:3,225:231:99:3599,423,0 chrXIV 53675 . T C 5548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=254;Dels=0.00;FS=8.841;HaplotypeScore=26.1971;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.548;QD=21.84;ReadPosRankSum=3.399;SB=-2.894e+03 GT:AD:DP:GQ:PL 1/1:4,249:254:99:5548,624,0 chrXIV 53756 . G A 7055.01 PASS AC=2;AF=1.00;AN=2;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.57;SB=-3.378e+03 GT:AD:DP:GQ:PL 1/1:0,327:327:99:7055,816,0 chrXIV 54162 . C T 3026 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.40;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3059,336,0 chrXIV 54428 . G A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.66;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3384,375,0 chrXIV 54509 . T C 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=152;Dels=0.00;FS=3.529;HaplotypeScore=15.7744;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.516;QD=21.02;ReadPosRankSum=1.686;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3228,360,0 chrXIV 54560 . A G 3091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=168;Dels=0.00;FS=2.991;HaplotypeScore=14.3317;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.110;QD=18.40;ReadPosRankSum=2.405;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3124,366,0 chrXIV 54694 . T C 3851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.5408;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.314;QD=22.01;ReadPosRankSum=1.692;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3851,429,0 chrXIV 54722 . A G 3299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=156;Dels=0.00;FS=3.334;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.687;QD=21.15;ReadPosRankSum=1.687;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3299,366,0 chrXIV 54935 . C T 2650 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.2464;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.03;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2683,303,0 chrXIV 54995 . A G 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=122;Dels=0.00;FS=3.039;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.176;QD=22.39;ReadPosRankSum=2.408;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:2,117:122:99:2764,312,0 chrXIV 55037 . A G 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=3.637;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.905;QD=22.35;ReadPosRankSum=1.706;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3050,357,0 chrXIV 55235 . A G 3346.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:3346,387,0 chrXIV 55368 . C T 4422.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4422,483,0 chrXIV 55783 . C T 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=169;Dels=0.00;FS=4.150;HaplotypeScore=17.5029;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-1.199;QD=20.16;ReadPosRankSum=-0.974;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3407,366,0 chrXIV 55822 . T C 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=135;Dels=0.00;FS=16.574;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-1.356;QD=19.16;ReadPosRankSum=2.947;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:3,130:135:99:2620,300,0 chrXIV 55838 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=21.22;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2749,303,0 chrXIV 55899 . G A 3603.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.10;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3603,405,0 chrXIV 55969 . A G 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-0.429;QD=22.19;ReadPosRankSum=1.700;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2452,273,0 chrXIV 56021 . G T 1310 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.47;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1343,147,0 chrXIV 56022 . G T 1335 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.19;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1368,147,0 chrXIV 56281 . A G 788 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=20.21;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:90:821,90,0 chrXIV 56359 . T A 1339 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.25;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1372,150,0 chrXIV 56445 . A G 1430 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1463,165,0 chrXIV 57196 . A G 2488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=6.456;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.230;QD=22.02;ReadPosRankSum=2.232;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2521,288,0 chrXIV 57343 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.70;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2830,303,0 chrXIV 57346 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=18.57;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2689,303,0 chrXIV 57579 . C T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.2879;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.54;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3831,414,0 chrXIV 57838 . A G 6196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=272;Dels=0.00;FS=3.240;HaplotypeScore=9.4895;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.178;QD=22.78;ReadPosRankSum=1.643;SB=-3.398e+03 GT:AD:DP:GQ:PL 1/1:1,271:272:99:6196,681,0 chrXIV 57896 . C T 6507.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=13.2745;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.52;SB=-3.145e+03 GT:AD:DP:GQ:PL 1/1:0,287:289:99:6507,697,0 chrXIV 58009 . G T 5640.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.53;SB=-3.172e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:5640,633,0 chrXIV 58013 . G A 5341.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.54;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5341,600,0 chrXIV 58099 . G A 4015.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.5484;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=21.70;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4015,435,0 chrXIV 58106 . T C 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.340;DP=190;Dels=0.00;FS=13.333;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=0.427;QD=19.94;ReadPosRankSum=3.368;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:4,186:190:99:3788,423,0 chrXIV 58117 . A G 3755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=0.286;QD=19.26;ReadPosRankSum=1.714;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:3755,423,0 chrXIV 58193 . G A 5446.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=17.6698;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.32;SB=-2.949e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5446,600,0 chrXIV 58317 . T C 4932.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-1.052;QD=22.94;ReadPosRankSum=1.716;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4932,546,0 chrXIV 58553 . T C 4457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=204;Dels=0.00;FS=11.190;HaplotypeScore=11.3974;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.079;QD=21.85;ReadPosRankSum=2.887;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:3,201:204:99:4457,510,0 chrXIV 58685 . T C 2883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=132;Dels=0.00;FS=6.888;HaplotypeScore=7.9256;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.903;QD=21.84;ReadPosRankSum=2.357;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2916,339,0 chrXIV 58697 . C T 3025 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=23.45;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3058,333,0 chrXIV 59033 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3011,345,0 chrXIV 59530 . G T 8041.01 PASS AC=2;AF=1.00;AN=2;DP=347;Dels=0.00;FS=0.000;HaplotypeScore=21.7432;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.17;SB=-4.032e+03 GT:AD:DP:GQ:PL 1/1:0,346:347:99:8041,885,0 chrXIV 59727 . C T 4301.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.01;FS=0.000;HaplotypeScore=188.5584;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=21.61;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4301,468,0 chrXIV 59823 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.810;DP=171;Dels=0.00;FS=3.890;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.523;QD=21.33;ReadPosRankSum=0.051;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3648,388,0 chrXIV 59998 . G A 3674.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.3539;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.86;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3674,393,0 chrXIV 60029 . T C 3925.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=22.05;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3925,438,0 chrXIV 60034 . A T 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=179;Dels=0.00;FS=3.778;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=-0.881;QD=21.81;ReadPosRankSum=1.693;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3904,426,0 chrXIV 60096 . A G 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=180;Dels=0.00;FS=3.559;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=-1.497;QD=15.43;ReadPosRankSum=1.184;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,176:180:99:2811,302,0 chrXIV 60098 . G C 2797 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.0745;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=14.88;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:2830,324,0 chrXIV 60233 . T C 6324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.083;DP=282;Dels=0.00;FS=10.019;HaplotypeScore=27.5389;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.089;QD=22.43;ReadPosRankSum=4.416;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:7,275:282:99:6324,702,0 chrXIV 60302 . C T 7141.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=13.5943;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.80;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:0,300:300:99:7141,786,0 chrXIV 60608 . A G 5475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.033;DP=265;Dels=0.00;FS=10.516;HaplotypeScore=17.3290;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.883;QD=20.66;ReadPosRankSum=4.081;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:6,259:265:99:5475,633,0 chrXIV 60667 . C T 5513.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=17.4445;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.45;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,257:257:99:5513,609,0 chrXIV 60881 . T C 4308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=191;Dels=0.00;FS=5.915;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.751;QD=22.56;ReadPosRankSum=2.963;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:3,187:191:99:4308,489,0 chrXIV 60914 . C T 4157.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.35;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4157,459,0 chrXIV 61469 . C T 3680.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.52;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3680,393,0 chrXIV 61544 . C T 3730.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.7025;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.69;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3730,414,0 chrXIV 61714 . G C 1489 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=18.85;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1522,180,0 chrXIV 61741 . T C 1582 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.82;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1615,177,0 chrXIV 62457 . G A 2821 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.04;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2854,315,0 chrXIV 62535 . T A 2726 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=111.8063;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=19.75;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2759,315,0 chrXIV 62564 . G A 2282 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=17.69;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2315,252,0 chrXIV 62649 . A G 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=120;Dels=0.00;FS=6.208;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.740;QD=20.23;ReadPosRankSum=2.366;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:2,116:120:99:2461,282,0 chrXIV 62701 . G A 3053 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.02;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.13;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3086,330,0 chrXIV 62825 . A T 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=125;Dels=0.00;FS=7.176;HaplotypeScore=9.3094;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=0.482;QD=21.59;ReadPosRankSum=2.410;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2732,294,0 chrXIV 62842 . C T 2401 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.68;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2434,276,0 chrXIV 63085 . T A 4336.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=23.31;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4336,483,0 chrXIV 63207 . T G 4363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=193;Dels=0.00;FS=3.597;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.310;QD=22.61;ReadPosRankSum=1.714;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,189:193:99:4363,495,0 chrXIV 63313 . G T 3526.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.9832;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;QD=20.99;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3526,381,0 chrXIV 63358 . A T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=114.8959;MLEAC=1;MLEAF=0.500;MQ=31.15;MQ0=0;MQRankSum=-0.272;QD=0.09;ReadPosRankSum=-3.980;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:132,17:149:43:43,0,1150 chrXIV 63403 . C T 1940 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=0;QD=15.16;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1973,219,0 chrXIV 63669 . A G 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=161;Dels=0.00;FS=3.474;HaplotypeScore=10.4736;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=1;MQRankSum=1.557;QD=21.47;ReadPosRankSum=1.688;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:2,157:161:99:3456,393,0 chrXIV 64081 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1490;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.21;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3268,360,0 chrXIV 64096 . A G 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=157;Dels=0.00;FS=2.899;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=0.717;QD=20.13;ReadPosRankSum=2.371;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3194,360,0 chrXIV 64329 . G A 2590 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.89;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2623,291,0 chrXIV 64357 . T C 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=7.753;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-0.551;QD=20.18;ReadPosRankSum=2.377;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2777,324,0 chrXIV 64664 . A G 1952 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.96;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1985,231,0 chrXIV 64927 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.96;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2787,318,0 chrXIV 64948 . A T 3000 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3038;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=19.23;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3033,330,0 chrXIV 65061 . T C 2170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=100;Dels=0.00;FS=3.053;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=0.554;QD=21.70;ReadPosRankSum=2.277;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2203,249,0 chrXIV 65224 . G C 2968 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.1454;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.79;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3001,342,0 chrXIV 65331 . C T 3590.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.3068;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.31;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3590,408,0 chrXIV 65473 . G A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.65;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3800,417,0 chrXIV 65493 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.89;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3381,384,0 chrXIV 65527 . A T 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=0.607;QD=18.88;ReadPosRankSum=1.666;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3035,339,0 chrXIV 65647 . A T 2517 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.7251;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=20.14;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2550,282,0 chrXIV 65649 . T A 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.404;HaplotypeScore=4.4590;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=0.586;QD=20.25;ReadPosRankSum=1.650;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2625,285,0 chrXIV 65700 . T C 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.4705;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.732;QD=20.64;ReadPosRankSum=1.708;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2964,333,0 chrXIV 65912 . G A 3470.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.6127;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=18.76;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,178:185:99:3470,399,0 chrXIV 65938 . T C 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=223;Dels=0.00;FS=9.090;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-0.154;QD=16.48;ReadPosRankSum=2.968;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:3,219:223:99:3674,414,0 chrXIV 66215 . C T 4294.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4294,462,0 chrXIV 66654 . T C 4758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.046;QD=21.53;ReadPosRankSum=1.716;SB=-2.352e+03 GT:AD:DP:GQ:PL 1/1:1,216:221:99:4758,543,0 chrXIV 66768 . A G 4891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.2338;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.214;QD=22.33;ReadPosRankSum=1.716;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:1,218:219:99:4891,573,0 chrXIV 66837 . T C 5193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=228;Dels=0.00;FS=3.875;HaplotypeScore=16.6509;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.534;QD=22.78;ReadPosRankSum=1.717;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:5193,582,0 chrXIV 67042 . C A 3948.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3948,426,0 chrXIV 67140 . C T 3531.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.3497;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.78;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3531,408,0 chrXIV 68040 . G C 2528 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.98;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2561,291,0 chrXIV 68221 . T A 2928 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.18;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2961,321,0 chrXIV 68234 . T A 2817 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8527;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.67;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2850,309,0 chrXIV 68498 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.65;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2955,324,0 chrXIV 68534 . C G 3046 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.56;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3079,342,0 chrXIV 69145 . A C 4259.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4259,477,0 chrXIV 69824 . C T 4069.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.43;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4069,441,0 chrXIV 69925 . T C 4222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.1757;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.226;QD=22.82;ReadPosRankSum=1.695;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4222,489,0 chrXIV 70114 . C T 5808.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=17.3763;MLEAC=2;MLEAF=1.00;MQ=63.03;MQ0=0;QD=20.82;SB=-3.583e+03 GT:AD:DP:GQ:PL 1/1:0,279:279:99:5808,645,0 chrXIV 70291 . G A 7414.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=19.2645;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.53;SB=-3.864e+03 GT:AD:DP:GQ:PL 1/1:0,328:329:99:7414,819,0 chrXIV 70477 . G A 6036.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=21.3064;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=19.99;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:0,302:302:99:6036,660,0 chrXIV 70533 . C T 5290.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=15.8667;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.16;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:5290,588,0 chrXIV 70597 . C T 5208.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=16.9944;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:5208,556,0 chrXIV 71495 . T C 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=4.157;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;MQRankSum=1.670;QD=19.45;ReadPosRankSum=1.670;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2211,246,0 chrXIV 71660 . C A 2740 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.9517;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2773,303,0 chrXIV 71751 . G C 2837 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.16;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2870,327,0 chrXIV 71784 . G A 3105 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=26.31;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3138,333,0 chrXIV 71817 . C G 2926 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.68;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2959,345,0 chrXIV 72005 . T A 3279.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.84;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3279,354,0 chrXIV 72126 . A G 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=140;Dels=0.00;FS=3.038;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.490;QD=23.54;ReadPosRankSum=2.378;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:3295,369,0 chrXIV 72483 . G A 2516 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8088;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.96;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2549,276,0 chrXIV 72729 . A T 2402 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.66;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2435,267,0 chrXIV 72735 . T C 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.596;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=1.127;QD=21.24;ReadPosRankSum=1.665;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2221,255,0 chrXIV 74437 . T G 3131 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.53;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3164,354,0 chrXIV 74523 . A C 2180 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2213,258,0 chrXIV 74571 . A T 2353 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.39;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2386,261,0 chrXIV 74607 . T A 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=6.570;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.010;QD=21.63;ReadPosRankSum=2.330;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2693,297,0 chrXIV 74669 . T A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.69;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3432,369,0 chrXIV 75290 . A G 2437 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.95;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2470,276,0 chrXIV 75636 . C T 3004 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.23;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3037,333,0 chrXIV 75675 . G A 3917.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3917,423,0 chrXIV 75885 . G A 4276.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.49;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4276,477,0 chrXIV 76793 . G A 4765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.169;DP=210;Dels=0.00;FS=3.470;HaplotypeScore=7.4858;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;MQRankSum=-1.202;QD=22.69;ReadPosRankSum=-0.870;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:4765,499,0 chrXIV 76810 . A G 4630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=207;Dels=0.00;FS=7.591;HaplotypeScore=9.6376;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;MQRankSum=-1.385;QD=22.37;ReadPosRankSum=1.639;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:2,201:207:99:4630,500,0 chrXIV 76856 . A T 5619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=247;Dels=0.00;FS=4.367;HaplotypeScore=9.2449;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-1.521;QD=22.75;ReadPosRankSum=1.619;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:5619,627,0 chrXIV 77006 . G A 4723.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=6.9719;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;QD=18.17;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:4723,534,0 chrXIV 77017 . A T 4716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=43.27;MQ0=0;MQRankSum=-0.531;QD=16.90;ReadPosRankSum=1.720;SB=-3.437e+03 GT:AD:DP:GQ:PL 1/1:1,278:279:99:4716,537,0 chrXIV 77028 . G T 4688.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=17.11;SB=-3.439e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:4688,519,0 chrXIV 77029 . A G 4576.01 PASS AC=2;AF=1.00;AN=2;DP=278;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;QD=16.46;SB=-3.274e+03 GT:AD:DP:GQ:PL 1/1:0,276:278:99:4576,522,0 chrXIV 77065 . G A 4573.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=18.15;SB=-2.662e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:4573,501,0 chrXIV 77179 . T C 4237.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=4.054;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;MQRankSum=-0.370;QD=20.37;ReadPosRankSum=1.715;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:4237,486,0 chrXIV 77182 . G A 4269.01 SnpCluster AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=21.13;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4269,474,0 chrXIV 77185 . T C 4182.01 SnpCluster AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=19.82;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4182,486,0 chrXIV 77273 . T C 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=187;Dels=0.00;FS=3.327;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;MQRankSum=-0.365;QD=20.91;ReadPosRankSum=1.695;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:3911,441,0 chrXIV 77306 . T C 4074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=199;Dels=0.00;FS=6.053;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-1.036;QD=20.47;ReadPosRankSum=2.954;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:3,193:199:99:4074,456,0 chrXIV 77473 . C T 4171.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.11;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4171,468,0 chrXIV 77543 . T C 4240.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.65;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4240,471,0 chrXIV 77910 . A T 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.667;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=-0.243;QD=21.43;ReadPosRankSum=1.641;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2498,276,0 chrXIV 77941 . C T 1822 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=0;QD=16.72;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1855,210,0 chrXIV 77956 . A G 1471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=3.802;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=0;MQRankSum=-1.283;QD=13.62;ReadPosRankSum=1.700;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1504,168,0 chrXIV 77972 . C T 1107 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.44;MQ0=0;QD=11.41;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1140,123,0 chrXIV 77977 . T C 916 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.96;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:949,108,0 chrXIV 77980 . G A 1004 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.48;MQ0=0;QD=10.91;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1037,111,0 chrXIV 78004 . A G 1102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=4.075;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.35;MQ0=0;MQRankSum=-0.828;QD=11.98;ReadPosRankSum=1.619;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1135,129,0 chrXIV 78023 . C T 1294 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;QD=13.91;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1327,144,0 chrXIV 78037 . T C 1509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;MQRankSum=-0.966;QD=14.51;ReadPosRankSum=1.699;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1542,180,0 chrXIV 78115 . A G 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-1.045;QD=21.65;ReadPosRankSum=1.702;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2566,294,0 chrXIV 78245 . T C 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.881;QD=23.04;ReadPosRankSum=1.702;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2660,294,0 chrXIV 78386 . C A 5041.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.5919;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.98;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:5041,541,0 chrXIV 78684 . G A 4546.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.5049;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4546,484,0 chrXIV 79025 . T G 4486.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=21.78;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4486,507,0 chrXIV 79032 . A T 4605.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=23.03;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4605,495,0 chrXIV 79165 . A G 4304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=8.6786;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-1.213;QD=20.79;ReadPosRankSum=1.715;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4304,480,0 chrXIV 79183 . G T 4419.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=19.38;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4419,501,0 chrXIV 79205 . G A 3629.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=17.28;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:3629,399,0 chrXIV 79238 . C T 2862 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.5096;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=15.30;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:2895,315,0 chrXIV 79250 . C T 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=0.674;QD=13.61;ReadPosRankSum=0.866;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:1,182:184:99:2537,291,0 chrXIV 79325 . A G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=171;Dels=0.00;FS=5.618;HaplotypeScore=15.2106;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.030;QD=16.78;ReadPosRankSum=2.923;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:3,166:171:99:2903,336,0 chrXIV 79925 . C A 3860.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.6733;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.32;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3860,438,0 chrXIV 79961 . C T 3654.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.12;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3654,408,0 chrXIV 80375 . C T 4541.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.8668;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.17;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4541,501,0 chrXIV 80433 . C G 3668.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.3647;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.96;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,169:175:99:3668,417,0 chrXIV 80633 . A G 5437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=229;Dels=0.00;FS=5.086;HaplotypeScore=16.1651;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.218;QD=23.74;ReadPosRankSum=1.702;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:5437,621,0 chrXIV 81122 . A G 5760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=260;Dels=0.00;FS=5.836;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.725;QD=22.15;ReadPosRankSum=2.973;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:3,256:260:99:5760,639,0 chrXIV 81155 . C T 5769.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.98;SB=-3.147e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5769,630,0 chrXIV 81740 . C T 3105 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.18;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3138,348,0 chrXIV 81857 . A C 2671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.472;QD=22.26;ReadPosRankSum=1.703;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2704,306,0 chrXIV 82142 . C T 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=4.449;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.459;QD=23.60;ReadPosRankSum=-0.489;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2794,303,0 chrXIV 82229 . C T 2207 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2240,249,0 chrXIV 82505 . G T 2594 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2627,300,0 chrXIV 82637 . G A 2492 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.25;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2525,273,0 chrXIV 82802 . G A 3720.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3720,399,0 chrXIV 83130 . C T 3684.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.9747;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.77;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3684,402,0 chrXIV 83393 . T C 3483.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.2992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3483,396,0 chrXIV 83635 . C T 4300.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=16.2057;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.43;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,171:176:99:4300,468,0 chrXIV 83714 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4351;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.90;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3458,393,0 chrXIV 84166 . C T 3101 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=60.93;MQ0=0;QD=24.42;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3134,345,0 chrXIV 84464 . G C 4299.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=23.75;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,177:181:99:4299,480,0 chrXIV 84727 . G A 3730.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.01;FS=0.000;HaplotypeScore=2.9246;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=20.49;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3730,414,0 chrXIV 84728 . A G 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.796;DP=183;Dels=0.00;FS=12.280;HaplotypeScore=3.7133;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=-1.515;QD=19.80;ReadPosRankSum=3.701;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:5,177:183:99:3623,411,0 chrXIV 84877 . G A 4230.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.69;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4230,471,0 chrXIV 85225 . G A 3198 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=21.46;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3231,351,0 chrXIV 85237 . A G 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=141;Dels=0.00;FS=7.036;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-1.770;QD=19.18;ReadPosRankSum=2.415;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2738,309,0 chrXIV 85261 . G A 2430 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=19.29;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2463,270,0 chrXIV 85300 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.63;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2756,300,0 chrXIV 85381 . G A 3322.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.8652;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.00;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3322,357,0 chrXIV 85405 . A G 3306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.7679;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.500;QD=22.19;ReadPosRankSum=1.709;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3306,381,0 chrXIV 85666 . A T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.53;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3942,438,0 chrXIV 85777 . T C 4540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.1198;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.336;QD=22.59;ReadPosRankSum=1.680;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4540,516,0 chrXIV 85809 . C T 4582.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.38;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4582,487,0 chrXIV 85954 . T C 3100 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.39;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3133,354,0 chrXIV 86042 . G T 2549 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;QD=23.17;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2582,273,0 chrXIV 86180 . T C 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=125;Dels=0.00;FS=2.844;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-1.387;QD=18.56;ReadPosRankSum=2.391;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2353,264,0 chrXIV 86183 . T A 2324 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=17.88;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2357,264,0 chrXIV 86225 . C A 2819 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.28;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2852,303,0 chrXIV 86400 . T C 4271.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.36;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4271,486,0 chrXIV 86442 . C T 4168.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.2038;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.65;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4168,450,0 chrXIV 86703 . G A 4607.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=16.7525;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.53;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4607,507,0 chrXIV 87993 . C T 2699 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.0950;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=18.74;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2732,300,0 chrXIV 88013 . G A 2926 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.38;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2959,336,0 chrXIV 88100 . C A 4372.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.3405;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.64;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4372,504,0 chrXIV 89096 . G C 3511.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.55;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3511,387,0 chrXIV 89169 . A G 2834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=4.014;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.220;QD=22.49;ReadPosRankSum=1.650;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2867,339,0 chrXIV 89438 . C A 3066 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.90;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3099,354,0 chrXIV 89776 . C T 2954 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=24.82;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2987,324,0 chrXIV 89837 . C T 3688.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.7816;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3688,396,0 chrXIV 90332 . C T 5768.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=24.86;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5768,639,0 chrXIV 90408 . C G 4939.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=5.8164;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=19.76;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:0,246:250:99:4939,567,0 chrXIV 90414 . T C 4978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=250;Dels=0.00;FS=2.906;HaplotypeScore=8.8214;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=0.682;QD=19.91;ReadPosRankSum=2.410;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:2,248:250:99:4978,552,0 chrXIV 90493 . G C 4874.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=17.16;SB=-3.122e+03 GT:AD:DP:GQ:PL 1/1:0,282:284:99:4874,546,0 chrXIV 90876 . C A 4580.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=20.8858;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.82;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,217:220:99:4580,501,0 chrXIV 90956 . C T 4228.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.73;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4228,462,0 chrXIV 91169 . G A 5099.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=17.7205;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.18;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:5099,547,0 chrXIV 92138 . C T 3388.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.8336;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.29;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3388,372,0 chrXIV 92329 . C T 4451.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.4135;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.93;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4451,483,0 chrXIV 92407 . A G 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.382;QD=22.28;ReadPosRankSum=1.635;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3988,450,0 chrXIV 92476 . T C 3914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=183;Dels=0.00;FS=11.687;HaplotypeScore=15.7527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.106;QD=21.39;ReadPosRankSum=2.872;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:3,177:183:99:3914,441,0 chrXIV 92908 . A T 2858 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.33;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2891,324,0 chrXIV 93043 . A G 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=155;Dels=0.00;FS=6.107;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.731;QD=22.75;ReadPosRankSum=2.401;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:3,151:155:99:3527,402,0 chrXIV 93082 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3511,399,0 chrXIV 93328 . A G 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=170;Dels=0.00;FS=3.088;HaplotypeScore=12.9594;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.461;QD=21.31;ReadPosRankSum=1.691;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3623,423,0 chrXIV 93790 . T C 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=4.386;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.643;QD=21.68;ReadPosRankSum=1.683;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3090,357,0 chrXIV 93895 . T C 1975 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.8456;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2008,225,0 chrXIV 94390 . G A 4495.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.2623;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4495,486,0 chrXIV 94480 . T A 3888.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.71;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3888,432,0 chrXIV 95173 . G A 2086 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.87;MQ0=0;QD=23.98;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2119,234,0 chrXIV 95269 . A G 2751 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2784,309,0 chrXIV 96181 . C A 5339.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.83;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5339,588,0 chrXIV 96406 . T C 2996 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=20.95;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3029,348,0 chrXIV 96621 . T G 61.09 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.211;DP=42;Dels=0.00;FS=16.675;HaplotypeScore=1.8533;MLEAC=1;MLEAF=0.500;MQ=23.79;MQ0=11;MQRankSum=1.970;QD=1.45;ReadPosRankSum=-2.211;SB=-7.110e+01 GT:AD:DP:GQ:PL 0/1:12,30:42:14:91,0,14 chrXIV 96704 . G A 626 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.65;MQ0=33;QD=10.26;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:32,28:61:72:659,72,0 chrXIV 96833 . C T 52.97 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.03;MQ0=34;QD=1.36;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:23,15:39:9:85,9,0 chrXIV 101054 . T C 54.51 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.29;MQ0=2;QD=3.41;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:1,15:16:12:87,12,0 chrXIV 101087 . G A 75.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.980;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.87;MQ0=2;MQRankSum=-1.734;QD=3.01;ReadPosRankSum=-1.734;SB=-1.029e-01 GT:AD:DP:GQ:PL 1/1:3,22:25:15:108,15,0 chrXIV 101089 . A C 75.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.87;MQ0=2;MQRankSum=-1.734;QD=3.01;ReadPosRankSum=-1.281;SB=-1.029e-01 GT:AD:DP:GQ:PL 1/1:3,22:25:15:108,15,0 chrXIV 101093 . G T 75.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.261;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.82;MQ0=2;MQRankSum=-1.734;QD=3.14;ReadPosRankSum=-0.630;SB=0.243 GT:AD:DP:GQ:PL 1/1:3,21:24:15:108,15,0 chrXIV 101111 . G A 75.26 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.13;MQ0=1;QD=3.42;SB=-2.707e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:15:108,15,0 chrXIV 101123 . G A 75.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.073;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.13;MQ0=1;MQRankSum=-1.734;QD=3.42;ReadPosRankSum=0.908;SB=0.702 GT:AD:DP:GQ:PL 1/1:2,20:22:15:108,15,0 chrXIV 101126 . T A 75.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.08;MQ0=1;MQRankSum=-1.734;QD=3.58;ReadPosRankSum=1.041;SB=1.86 GT:AD:DP:GQ:PL 1/1:2,19:21:15:108,15,0 chrXIV 101133 . T C 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.070;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.88;MQ0=1;MQRankSum=-0.632;QD=2.87;ReadPosRankSum=2.178;SB=3.13 GT:AD:DP:GQ:PL 1/1:3,16:19:12:87,12,0 chrXIV 101236 . G T 55.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.472;DP=19;Dels=0.00;FS=26.454;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.07;MQ0=1;MQRankSum=-3.620;QD=2.90;ReadPosRankSum=3.002;SB=-1.295e+01 GT:AD:DP:GQ:PL 0/1:10,9:19:85:85,0,177 chrXIV 101242 . A C 184 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.22;MQ0=1;QD=11.50;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:3,13:16:30:217,30,0 chrXIV 101248 . G A 160.19 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.979;DP=23;Dels=0.00;FS=16.212;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=16.26;MQ0=1;MQRankSum=-0.553;QD=6.96;ReadPosRankSum=1.405;SB=-4.387e+01 GT:AD:DP:GQ:PL 1/1:5,18:23:8:192,8,0 chrXIV 101268 . T C 139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.458;DP=37;Dels=0.00;FS=17.285;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.27;MQ0=6;MQRankSum=-2.807;QD=3.76;ReadPosRankSum=1.588;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:12,25:37:99:169,0,116 chrXIV 101270 . G A 139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.676;DP=37;Dels=0.00;FS=17.285;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.27;MQ0=6;MQRankSum=-3.112;QD=3.76;ReadPosRankSum=1.588;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:9,28:37:99:169,0,105 chrXIV 101393 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=16;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.34;MQ0=12;MQRankSum=-0.727;QD=0.75;ReadPosRankSum=0.727;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,15:16:6:43,6,0 chrXIV 101412 . G T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.01;MQ0=21;QD=0.50;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:8,16:24:6:43,6,0 chrXIV 101416 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.14;MQ0=20;QD=0.52;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:7,16:23:6:43,6,0 chrXIV 101438 . C T 322 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.62;MQ0=22;QD=8.47;SB=-6.500e+01 GT:AD:DP:GQ:PL 1/1:5,33:38:42:355,42,0 chrXIV 101454 . T C 450 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=18.26;MQ0=25;QD=8.65;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:1,50:52:54:483,54,0 chrXIV 101505 . G A 476 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.99;MQ0=32;QD=8.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:59:57:509,57,0 chrXIV 101618 . T G 94.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.87;MQ0=11;MQRankSum=0.751;QD=4.71;ReadPosRankSum=-0.751;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:7,13:20:15:127,15,0 chrXIV 101623 . C T 136.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.62;MQ0=11;MQRankSum=0.751;QD=6.48;ReadPosRankSum=-0.751;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:7,13:21:18:169,18,0 chrXIV 101632 . T C 286 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.810;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.35;MQ0=7;MQRankSum=1.504;QD=13.00;ReadPosRankSum=-0.116;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:4,18:22:36:319,36,0 chrXIV 101635 . T C 282 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.273;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.35;MQ0=7;MQRankSum=1.504;QD=12.82;ReadPosRankSum=0.579;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:4,18:22:36:315,36,0 chrXIV 101639 . A G 299 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.273;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.49;MQ0=5;MQRankSum=1.504;QD=14.95;ReadPosRankSum=1.504;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:4,16:20:36:332,36,0 chrXIV 101673 . G A 450 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.20;MQ0=0;QD=20.45;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:51:483,51,0 chrXIV 101676 . T A 445 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.20;MQ0=0;QD=20.23;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:51:478,51,0 chrXIV 101689 . G A 417 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=0;QD=19.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:48:450,48,0 chrXIV 101700 . G A 383 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=0;QD=16.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:45:416,45,0 chrXIV 101701 . G A 382 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=0;QD=16.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:45:415,45,0 chrXIV 101708 . T C 310 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.03;MQ0=0;QD=12.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:39:343,39,0 chrXIV 101711 . C G 239 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.90;MQ0=0;QD=10.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:30:272,30,0 chrXIV 101712 . A G 224 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.90;MQ0=0;QD=10.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:30:257,30,0 chrXIV 101715 . G A 230 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.91;MQ0=0;QD=9.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:30:263,30,0 chrXIV 101723 . T C 101.26 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.63;MQ0=0;QD=4.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:15:134,15,0 chrXIV 101727 . A G 101.26 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.63;MQ0=0;QD=4.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:15:134,15,0 chrXIV 101735 . T A 77.51 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.63;MQ0=0;QD=3.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:12:110,12,0 chrXIV 102325 . C T 44.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.02;MQ0=29;MQRankSum=1.537;QD=1.28;ReadPosRankSum=0.406;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:31,4:35:9:77,9,0 chrXIV 102326 . A T 44.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.02;MQ0=29;MQRankSum=1.537;QD=1.28;ReadPosRankSum=0.406;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:32,3:35:9:77,9,0 chrXIV 102792 . T C 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=128;Dels=0.00;FS=4.014;HaplotypeScore=10.1656;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=0.715;QD=20.08;ReadPosRankSum=1.650;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2603,300,0 chrXIV 102960 . A G 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.247;QD=22.12;ReadPosRankSum=1.694;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2068,228,0 chrXIV 103007 . G A 2593 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.36;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2626,291,0 chrXIV 104038 . A T 3180 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.8663;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.38;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3213,351,0 chrXIV 104301 . C T 3455.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.9888;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.99;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3455,366,0 chrXIV 104770 . G A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=23.48;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3310,363,0 chrXIV 104781 . A T 2855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=124;Dels=0.00;FS=6.343;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=-1.379;QD=23.02;ReadPosRankSum=2.331;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2888,318,0 chrXIV 104785 . C T 2588 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=22.12;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2621,288,0 chrXIV 104803 . G C 2434 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=22.13;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2467,282,0 chrXIV 104913 . T G 2722 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.13;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2755,309,0 chrXIV 104993 . C T 1829 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8497;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;QD=15.77;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1862,204,0 chrXIV 105379 . T C 6242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=16.4073;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.809;QD=22.78;ReadPosRankSum=1.719;SB=-2.787e+03 GT:AD:DP:GQ:PL 1/1:1,273:274:99:6242,717,0 chrXIV 105541 . G A 7600.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.722;DP=362;Dels=0.00;FS=3.663;HaplotypeScore=30.0081;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.209;QD=20.99;ReadPosRankSum=-0.222;SB=-3.699e+03 GT:AD:DP:GQ:PL 1/1:1,352:361:99:7600,873,0 chrXIV 105697 . A G 9501.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=421;Dels=0.00;FS=8.579;HaplotypeScore=25.0941;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.065;QD=22.57;ReadPosRankSum=2.397;SB=-3.966e+03 GT:AD:DP:GQ:PL 1/1:2,416:421:99:9501,1086,0 chrXIV 105839 . G A 11008.01 filter AC=2;AF=1.00;AN=2;DP=456;Dels=0.00;FS=0.000;HaplotypeScore=34.6543;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.14;SB=-4.456e+03 GT:AD:DP:GQ:PL 1/1:0,454:456:99:11008,1201,0 chrXIV 105988 . G A 10095.01 filter AC=2;AF=1.00;AN=2;DP=481;Dels=0.00;FS=0.000;HaplotypeScore=12.8122;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.99;SB=-4.316e+03 GT:AD:DP:GQ:PL 1/1:0,481:481:99:10095,1149,0 chrXIV 106801 . G A 3923.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3923,429,0 chrXIV 106872 . G A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.9514;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3310,363,0 chrXIV 107060 . C T 2751 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.12;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2784,303,0 chrXIV 107345 . T C 3209 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=18.77;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3242,372,0 chrXIV 107437 . G A 3351.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;MQRankSum=-1.379;QD=20.07;ReadPosRankSum=0.674;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3351,369,0 chrXIV 107440 . A G 3230.05 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=171;Dels=0.00;FS=2.569;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.45;MQ0=0;MQRankSum=0.232;QD=18.89;ReadPosRankSum=2.959;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:3,166:171:99:3263,366,0 chrXIV 107444 . C T 3225.28 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;QD=18.64;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3258,360,0 chrXIV 107671 . C T 2827 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.4485;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=21.26;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2860,321,0 chrXIV 107683 . T A 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.0811;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=-0.666;QD=21.34;ReadPosRankSum=1.705;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2807,303,0 chrXIV 107833 . C T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.42;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3239,354,0 chrXIV 107852 . A G 3539.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.58;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3539,402,0 chrXIV 108148 . A G 3999.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.804;QD=20.61;ReadPosRankSum=1.714;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:3999,462,0 chrXIV 108312 . A G 3393.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3393,390,0 chrXIV 108405 . A T 3189 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=25.11;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3222,348,0 chrXIV 108436 . T A 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-1.710;QD=19.93;ReadPosRankSum=1.645;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3222,351,0 chrXIV 108442 . A G 3104 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5839;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.16;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3137,348,0 chrXIV 108588 . A G 5381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=230;Dels=0.00;FS=4.298;HaplotypeScore=16.2018;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.322;QD=23.40;ReadPosRankSum=1.701;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,225:230:99:5381,594,0 chrXIV 108679 . G A 4763.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=18.53;SB=-3.041e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:4763,537,0 chrXIV 109033 . C T 3714.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.51;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3714,414,0 chrXIV 109383 . T C 4568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=215;Dels=0.00;FS=10.581;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=1.351;QD=21.25;ReadPosRankSum=2.967;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:3,212:215:99:4568,516,0 chrXIV 109413 . C T 4924.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.2086;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.56;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4924,537,0 chrXIV 109509 . G A 4642.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.81;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4642,498,0 chrXIV 109533 . G A 3866.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.72;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3866,441,0 chrXIV 109626 . T C 4309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.062;DP=201;Dels=0.00;FS=7.565;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.129;QD=21.44;ReadPosRankSum=1.578;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4309,481,0 chrXIV 109881 . A G 4168.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4168,486,0 chrXIV 110476 . C T 2771 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.4982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2804,312,0 chrXIV 110573 . C T 2993 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3026,330,0 chrXIV 110765 . G A 3164 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.7702;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3197,348,0 chrXIV 111039 . A G 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.183;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.9900;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.669;QD=24.18;ReadPosRankSum=0.739;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:4014,444,0 chrXIV 111222 . G C 4412.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=16.2604;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.34;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:4412,501,0 chrXIV 111267 . T A 5123.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.50;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5123,555,0 chrXIV 111323 . T C 5847.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.98;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:5847,651,0 chrXIV 111442 . G C 3718.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.53;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3718,417,0 chrXIV 111795 . T A 5033.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=218;Dels=0.00;FS=2.639;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=2.097;QD=23.09;ReadPosRankSum=2.427;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:5033,552,0 chrXIV 111896 . G A 6904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=19.9729;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.437;QD=23.89;ReadPosRankSum=-1.228;SB=-3.475e+03 GT:AD:DP:GQ:PL 1/1:1,282:289:99:6904,765,0 chrXIV 112077 . C T 5335.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.10;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:5335,576,0 chrXIV 112128 . A T 4708.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=205;Dels=0.00;FS=2.997;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-0.480;QD=22.97;ReadPosRankSum=2.401;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4708,534,0 chrXIV 112194 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=19.55;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3460,405,0 chrXIV 112203 . A G 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.761;DP=168;Dels=0.00;FS=7.970;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.521;QD=18.77;ReadPosRankSum=3.742;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:5,162:168:99:3186,357,0 chrXIV 112611 . T G 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.266;DP=163;Dels=0.00;FS=15.947;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.121;QD=21.09;ReadPosRankSum=3.384;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:4,159:163:99:3438,399,0 chrXIV 112669 . A G 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=179;Dels=0.00;FS=2.968;HaplotypeScore=12.0542;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.083;QD=18.75;ReadPosRankSum=2.367;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3357,381,0 chrXIV 112837 . C G 2825 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.40;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2858,318,0 chrXIV 112944 . T C 3473.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3473,399,0 chrXIV 113198 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=151;Dels=0.00;FS=2.962;HaplotypeScore=10.6671;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.041;QD=22.85;ReadPosRankSum=2.417;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3450,393,0 chrXIV 113311 . T C 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.8189;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.791;QD=19.11;ReadPosRankSum=1.686;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:2937,327,0 chrXIV 113360 . C T 3008 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.6653;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.53;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3041,339,0 chrXIV 113474 . G A 5525.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.19;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,243:249:99:5525,624,0 chrXIV 113529 . G C 4000.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.3504;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.98;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4000,459,0 chrXIV 113721 . C T 5157.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.44;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5157,555,0 chrXIV 113960 . T C 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=146;Dels=0.00;FS=4.055;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-1.708;QD=20.10;ReadPosRankSum=1.637;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2968,333,0 chrXIV 113969 . G A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=20.24;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3252,357,0 chrXIV 114209 . A G 3070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=157;Dels=0.00;FS=3.037;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=-2.164;QD=19.55;ReadPosRankSum=2.418;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:3103,354,0 chrXIV 114221 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=20.25;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3172,354,0 chrXIV 114314 . C T 3377.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.01;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3377,369,0 chrXIV 114419 . T C 3681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.8253;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.811;QD=21.16;ReadPosRankSum=1.712;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:1,172:174:99:3681,408,0 chrXIV 114795 . A G 4928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=216;Dels=0.00;FS=8.300;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.650;QD=22.81;ReadPosRankSum=2.415;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4928,564,0 chrXIV 114824 . T C 4553.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.9468;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.89;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4553,510,0 chrXIV 114893 . G C 3490.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.41;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,167:171:99:3490,399,0 chrXIV 115059 . G A 3542.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.1966;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=20.84;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3542,381,0 chrXIV 115067 . C T 3155 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.32;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,143:148:99:3188,342,0 chrXIV 115150 . G C 2595 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.62;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2628,294,0 chrXIV 115292 . T C 2738 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.26;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2771,312,0 chrXIV 115349 . C T 3369.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.61;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3369,375,0 chrXIV 115483 . G A 4997.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.0200;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.86;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4997,532,0 chrXIV 115637 . C T 6036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.387;DP=262;Dels=0.00;FS=3.522;HaplotypeScore=12.4970;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-1.599;QD=23.04;ReadPosRankSum=1.719;SB=-2.974e+03 GT:AD:DP:GQ:PL 1/1:1,261:262:99:6036,647,0 chrXIV 115655 . G A 6432.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=10.5662;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.33;SB=-3.245e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:6432,694,0 chrXIV 115691 . A G 5973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=279;Dels=0.00;FS=3.218;HaplotypeScore=16.6376;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-1.620;QD=21.41;ReadPosRankSum=1.707;SB=-3.414e+03 GT:AD:DP:GQ:PL 1/1:1,278:279:99:5973,675,0 chrXIV 115793 . A G 4258.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=10.5512;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-1.124;QD=17.31;ReadPosRankSum=1.718;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:1,244:246:99:4258,480,0 chrXIV 115811 . C T 3838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=14.4175;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.970;QD=15.60;ReadPosRankSum=1.703;SB=-2.961e+03 GT:AD:DP:GQ:PL 1/1:3,240:246:99:3838,432,0 chrXIV 116051 . C T 7196.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=22.4829;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.99;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,311:313:99:7196,786,0 chrXIV 116117 . G A 7219.01 filter AC=2;AF=1.00;AN=2;DP=389;Dels=0.00;FS=0.000;HaplotypeScore=13.3593;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=18.56;SB=-3.483e+03 GT:AD:DP:GQ:PL 1/1:0,384:389:99:7219,837,0 chrXIV 116131 . T C 7333.01 filter AC=2;AF=1.00;AN=2;DP=384;Dels=0.00;FS=0.000;HaplotypeScore=8.1811;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=19.10;SB=-3.484e+03 GT:AD:DP:GQ:PL 1/1:0,383:384:99:7333,843,0 chrXIV 116676 . C T 1912 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=21.24;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1945,222,0 chrXIV 116678 . C T 1900 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=21.59;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1933,219,0 chrXIV 116758 . G A 800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.188;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=1.291;QD=9.88;ReadPosRankSum=-2.042;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:5,76:81:90:833,90,0 chrXIV 116796 . A C 1832 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=13.2407;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.51;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,94:99:99:1865,213,0 chrXIV 116881 . T C 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=1.280;QD=22.98;ReadPosRankSum=1.657;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3227,366,0 chrXIV 116976 . T C 2271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=3.449;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=1.299;QD=21.63;ReadPosRankSum=1.632;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2304,258,0 chrXIV 117045 . T A 2996 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.1464;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.24;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3029,327,0 chrXIV 117121 . A G 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.628;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=35.4924;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.329;QD=17.93;ReadPosRankSum=2.837;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:3,65:68:99:1252,147,0 chrXIV 117253 . C T 1649 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=60.41;MQ0=0;QD=23.23;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1682,189,0 chrXIV 117840 . G A 5840.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=15.5385;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.17;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5840,633,0 chrXIV 117954 . T C 5887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=258;Dels=0.00;FS=3.165;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.462;QD=22.82;ReadPosRankSum=1.692;SB=-3.199e+03 GT:AD:DP:GQ:PL 1/1:1,256:258:99:5887,654,0 chrXIV 118050 . T C 6359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=302;Dels=0.00;FS=8.259;HaplotypeScore=22.1932;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.743;QD=21.06;ReadPosRankSum=2.376;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:2,300:302:99:6359,735,0 chrXIV 118227 . C T 4656.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=12.4624;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=18.19;SB=-2.928e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:4656,516,0 chrXIV 118233 . C T 4225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=5.2127;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=-0.129;QD=16.38;ReadPosRankSum=0.088;SB=-2.842e+03 GT:AD:DP:GQ:PL 1/1:1,255:258:99:4225,483,0 chrXIV 118249 . G C 3938.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=11.9446;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=15.50;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:3938,459,0 chrXIV 118743 . T C 3731.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=3.172;HaplotypeScore=9.0654;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=1.690;QD=22.34;ReadPosRankSum=1.711;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:1,163:167:99:3731,429,0 chrXIV 118942 . A T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.358;DP=142;Dels=0.00;FS=14.146;HaplotypeScore=7.7564;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;MQRankSum=-3.134;QD=0.14;ReadPosRankSum=-5.935;SB=1.24 GT:AD:DP:GQ:PL 1/1:129,13:142:6:51,6,0 chrXIV 118969 . A G 2322 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;QD=15.69;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2355,270,0 chrXIV 118999 . A C 202.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.613;DP=118;Dels=0.00;FS=10.180;HaplotypeScore=366.7990;MLEAC=1;MLEAF=0.500;MQ=32.71;MQ0=0;MQRankSum=0.958;QD=1.71;ReadPosRankSum=-6.651;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:95,23:118:29:232,0,29 chrXIV 119007 . G A 127.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.01;FS=8.535;HaplotypeScore=14.3397;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=0;MQRankSum=1.018;QD=1.28;ReadPosRankSum=2.400;SB=-9.681e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:18:160,18,0 chrXIV 119025 . C T 928 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.02;FS=0.000;HaplotypeScore=88.5145;MLEAC=2;MLEAF=1.00;MQ=32.35;MQ0=0;QD=7.86;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:961,105,0 chrXIV 119044 . T C 1174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.614;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;MQRankSum=-1.921;QD=9.17;ReadPosRankSum=2.662;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:3,125:128:99:1207,135,0 chrXIV 119074 . G A 2697 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.0880;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=16.55;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2730,300,0 chrXIV 119126 . T C 4447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=-0.452;QD=20.12;ReadPosRankSum=2.383;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:2,218:221:99:4447,504,0 chrXIV 119141 . T C 4479.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=20.00;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4479,498,0 chrXIV 119174 . T C 4862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=232;Dels=0.00;FS=2.559;HaplotypeScore=16.5510;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;MQRankSum=-1.613;QD=20.96;ReadPosRankSum=2.918;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:3,228:232:99:4862,549,0 chrXIV 119261 . G A 6523.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=7.1091;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=20.64;SB=-2.781e+03 GT:AD:DP:GQ:PL 1/1:0,316:316:99:6523,709,0 chrXIV 119274 . A G 5738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.335;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=11.2926;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;MQRankSum=-1.014;QD=16.25;ReadPosRankSum=3.178;SB=-3.138e+03 GT:AD:DP:GQ:PL 1/1:4,340:353:99:5738,654,0 chrXIV 119276 . T A 5945.01 PASS AC=2;AF=1.00;AN=2;DP=356;Dels=0.01;FS=0.000;HaplotypeScore=10.0928;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=16.70;SB=-3.402e+03 GT:AD:DP:GQ:PL 1/1:0,353:353:99:5945,663,0 chrXIV 119343 . C G 5607.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=18.0442;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=17.74;SB=-3.653e+03 GT:AD:DP:GQ:PL 1/1:0,313:316:99:5607,627,0 chrXIV 119684 . A G 3837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.240;QD=21.68;ReadPosRankSum=1.712;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3837,441,0 chrXIV 119900 . C A 3346.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3346,381,0 chrXIV 120092 . T C 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.898;QD=21.89;ReadPosRankSum=1.647;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3546,408,0 chrXIV 120476 . A G 4662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=199;Dels=0.00;FS=3.099;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.155;QD=23.43;ReadPosRankSum=1.715;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4662,537,0 chrXIV 120549 . C T 4392.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.0776;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.76;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4392,480,0 chrXIV 120620 . C T 3406.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.0052;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.69;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3406,378,0 chrXIV 121001 . G A 2063 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.27;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2096,225,0 chrXIV 121002 . C T 1954 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.94;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1987,222,0 chrXIV 121108 . G A 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.946;QD=25.32;ReadPosRankSum=-0.888;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:1,118:120:99:3071,327,0 chrXIV 121289 . G A 4529.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.59;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4529,489,0 chrXIV 121370 . C T 4421.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.7124;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.33;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4421,495,0 chrXIV 121517 . A C 4054.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.23;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4054,468,0 chrXIV 121736 . G C 4103.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=18.0483;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,184:189:99:4103,468,0 chrXIV 121853 . G A 4593.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.30;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4593,492,0 chrXIV 121874 . C T 4489.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.7940;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.90;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4489,486,0 chrXIV 121988 . T G 3220.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=171;Dels=0.00;FS=5.087;HaplotypeScore=13.3027;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.253;QD=18.83;ReadPosRankSum=1.712;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3253,375,0 chrXIV 122107 . C T 2742 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.11;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2775,303,0 chrXIV 122147 . C T 2452 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.43;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2485,279,0 chrXIV 122279 . T G 3121 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3154,363,0 chrXIV 122496 . G A 4347.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.80;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4347,495,0 chrXIV 122618 . G A 4184.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.57;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4184,453,0 chrXIV 122621 . T C 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=195;Dels=0.00;FS=3.148;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-0.541;QD=19.36;ReadPosRankSum=1.642;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:1,191:195:99:3775,423,0 chrXIV 122678 . C G 3814.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=18.70;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3814,441,0 chrXIV 122827 . T A 4592.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.7477;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.69;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4592,504,0 chrXIV 122859 . C A 4159.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.2233;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.04;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4159,471,0 chrXIV 123158 . G C 5069.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=13.8396;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.94;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5069,570,0 chrXIV 123423 . A C 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-0.577;QD=18.94;ReadPosRankSum=1.714;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:3598,417,0 chrXIV 123426 . T C 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=185;Dels=0.00;FS=3.979;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.534;QD=19.21;ReadPosRankSum=1.713;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3554,396,0 chrXIV 123530 . A G 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=160;Dels=0.00;FS=2.945;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.587;QD=19.55;ReadPosRankSum=2.403;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:2,155:160:99:3161,348,0 chrXIV 123533 . C T 3127 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.54;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3160,351,0 chrXIV 123569 . T C 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=183;Dels=0.00;FS=3.024;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-0.973;QD=19.85;ReadPosRankSum=2.396;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3632,408,0 chrXIV 123848 . C A 3911.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.35;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3911,429,0 chrXIV 123896 . A G 3656.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.02;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3656,420,0 chrXIV 123919 . G A 3217.04 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=6.5666;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.03;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3250,354,0 chrXIV 124046 . G T 3621.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8745;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.97;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3621,393,0 chrXIV 124139 . G A 2967 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.89;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3000,339,0 chrXIV 124154 . T C 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.906;QD=21.06;ReadPosRankSum=1.705;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2813,315,0 chrXIV 124235 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.87;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3231,351,0 chrXIV 124329 . G A 3105 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.84;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3138,348,0 chrXIV 124352 . C T 3343.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.43;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3343,378,0 chrXIV 124400 . A G 3191 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.32;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3224,354,0 chrXIV 124524 . G A 4083.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.5767;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.90;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4083,438,0 chrXIV 124634 . C G 3344.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.7957;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.86;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3344,384,0 chrXIV 124691 . G A 3543.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.8460;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.87;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3543,387,0 chrXIV 124765 . G A 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.637;QD=23.71;ReadPosRankSum=0.127;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3272,351,0 chrXIV 124988 . T C 3381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=149;Dels=0.00;FS=6.412;HaplotypeScore=9.9550;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.673;QD=22.69;ReadPosRankSum=2.333;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3381,375,0 chrXIV 125337 . G A 3367.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3367,378,0 chrXIV 125498 . A G 3653.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6698;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3653,423,0 chrXIV 125734 . A G 5215.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=19.2736;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.60;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5215,579,0 chrXIV 125895 . T C 4271.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=201;Dels=0.00;FS=3.279;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.831;QD=21.25;ReadPosRankSum=1.697;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4271,489,0 chrXIV 125915 . A G 4069.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.2302;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-1.715;QD=20.35;ReadPosRankSum=1.662;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4069,456,0 chrXIV 125981 . C T 4300.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.38;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,207:211:99:4300,474,0 chrXIV 126068 . G A 3791.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.84;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3791,414,0 chrXIV 126226 . G A 2659 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.16;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2692,294,0 chrXIV 126362 . C T 3515.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=12.8799;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.17;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3515,390,0 chrXIV 126492 . T A 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=0.986;QD=18.60;ReadPosRankSum=1.652;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2525,294,0 chrXIV 126503 . G T 2759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=3.363;HaplotypeScore=3.4503;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-1.732;QD=19.57;ReadPosRankSum=1.118;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2792,318,0 chrXIV 126566 . A G 2885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=145;Dels=0.00;FS=2.572;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.629;QD=19.90;ReadPosRankSum=2.867;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:3,141:145:99:2918,327,0 chrXIV 126596 . T A 2749 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.17;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2782,300,0 chrXIV 126688 . A C 2636 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=23.12;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2669,297,0 chrXIV 126733 . T G 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=4.314;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-1.026;QD=20.47;ReadPosRankSum=1.700;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2244,261,0 chrXIV 126744 . G A 2148 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=21.70;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2181,243,0 chrXIV 126875 . C T 2458 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.10;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2491,270,0 chrXIV 126981 . T C 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=1.039;QD=21.56;ReadPosRankSum=1.638;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2405,267,0 chrXIV 127037 . T A 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.859;QD=23.46;ReadPosRankSum=1.704;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2919,318,0 chrXIV 127066 . T C 3119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.742;QD=22.28;ReadPosRankSum=1.707;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3152,342,0 chrXIV 127207 . G A 3879.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.29;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3879,438,0 chrXIV 127238 . C T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=22.21;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3776,402,0 chrXIV 127240 . G A 3511.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.28;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3511,381,0 chrXIV 127270 . T C 2893 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=18.66;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2926,336,0 chrXIV 127345 . A T 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.000;QD=22.47;ReadPosRankSum=1.658;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3201,354,0 chrXIV 127829 . A T 3938.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.76;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3938,432,0 chrXIV 128152 . G A 4882.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.5835;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.60;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4882,555,0 chrXIV 128162 . G A 4735.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=22.13;SB=-2.401e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4735,531,0 chrXIV 128224 . G T 4255.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.3593;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.98;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4255,492,0 chrXIV 128256 . G A 4328.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=17.4697;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.43;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4328,483,0 chrXIV 128407 . A G 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.500;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=1.014;QD=22.34;ReadPosRankSum=1.711;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3686,408,0 chrXIV 128581 . T C 4013.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.06;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4013,459,0 chrXIV 128629 . C T 4063.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.76;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4063,438,0 chrXIV 128650 . A G 3962.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.44;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3962,450,0 chrXIV 128749 . A T 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.291;QD=22.95;ReadPosRankSum=1.710;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3626,396,0 chrXIV 128889 . A G 3108 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.0540;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.72;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3141,354,0 chrXIV 128908 . G A 2717 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.13;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2750,306,0 chrXIV 129103 . C T 3225.28 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=23.37;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3258,369,0 chrXIV 129244 . C T 1961 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=23.07;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1994,219,0 chrXIV 129300 . C T 1513 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=18.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1546,177,0 chrXIV 129427 . T C 208.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.883;DP=48;Dels=0.00;FS=26.658;HaplotypeScore=35.8740;MLEAC=1;MLEAF=0.500;MQ=36.86;MQ0=0;MQRankSum=-0.374;QD=4.33;ReadPosRankSum=1.599;SB=-2.995e+00 GT:AD:DP:GQ:PL 0/1:7,40:48:64:238,0,64 chrXIV 129503 . A G 1407 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=21.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1440,165,0 chrXIV 129702 . A G 2983 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.43;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3016,351,0 chrXIV 129768 . G A 2848 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.74;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2881,333,0 chrXIV 129800 . T C 2742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=133;Dels=0.00;FS=3.282;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.289;QD=20.62;ReadPosRankSum=1.706;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2775,318,0 chrXIV 130095 . T C 2822 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2855,324,0 chrXIV 130662 . T A 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=3.326;HaplotypeScore=7.4365;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-1.511;QD=23.85;ReadPosRankSum=1.644;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3792,420,0 chrXIV 130860 . C T 2851 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=22.10;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2884,312,0 chrXIV 130887 . G A 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.416;DP=129;Dels=0.00;FS=3.253;HaplotypeScore=2.7920;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-0.524;QD=22.68;ReadPosRankSum=-0.685;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2959,321,0 chrXIV 130901 . C T 2853 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.61;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2886,318,0 chrXIV 130982 . A G 1993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.196;DP=98;Dels=0.00;FS=2.922;HaplotypeScore=8.3445;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.495;QD=20.34;ReadPosRankSum=2.374;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2026,228,0 chrXIV 131438 . T A 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=151;Dels=0.00;FS=4.155;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.617;QD=21.12;ReadPosRankSum=1.617;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3222,351,0 chrXIV 131472 . T C 2612 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=18.79;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2645,312,0 chrXIV 131511 . G A 3055 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.1918;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.58;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3088,351,0 chrXIV 131552 . G T 2248 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=16.29;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2281,261,0 chrXIV 131762 . C T 2479 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.01;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2512,273,0 chrXIV 131888 . G A 2851 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.22;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2884,321,0 chrXIV 132051 . T C 2690 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=19.21;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2723,306,0 chrXIV 132054 . A G 2676 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=18.71;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2709,312,0 chrXIV 132063 . C T 2542 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=18.29;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2575,285,0 chrXIV 132066 . T C 2381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=-0.153;QD=17.51;ReadPosRankSum=1.707;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2414,276,0 chrXIV 132228 . A T 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=3.073;HaplotypeScore=5.7867;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-1.039;QD=21.19;ReadPosRankSum=1.707;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3021,339,0 chrXIV 132251 . C T 3155 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=22.22;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3188,345,0 chrXIV 132374 . C T 2939 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.13;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2972,318,0 chrXIV 132585 . T C 2393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=131;Dels=0.00;FS=2.910;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.479;QD=18.27;ReadPosRankSum=2.375;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2426,276,0 chrXIV 132587 . G A 2382 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=18.18;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2415,261,0 chrXIV 132840 . C T 3060 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.72;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3093,336,0 chrXIV 132925 . G C 2392 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=18.83;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2425,270,0 chrXIV 132929 . C T 2405 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=18.94;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2438,261,0 chrXIV 133032 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.85;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2827,315,0 chrXIV 133191 . C T 3281.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.17;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3281,366,0 chrXIV 133504 . A G 3097 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.12;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3130,360,0 chrXIV 133521 . C T 2964 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9237;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.79;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2997,327,0 chrXIV 134391 . T A 2775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.7156;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.305;QD=18.88;ReadPosRankSum=1.707;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,139:147:99:2808,312,0 chrXIV 134430 . A G 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=163;Dels=0.00;FS=3.031;HaplotypeScore=10.2816;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.388;QD=14.96;ReadPosRankSum=2.419;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:2471,285,0 chrXIV 134481 . T C 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=186;Dels=0.00;FS=3.033;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.219;QD=18.31;ReadPosRankSum=2.410;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:3406,390,0 chrXIV 134870 . A G 3986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=10.999;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.417;QD=23.59;ReadPosRankSum=2.391;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3986,453,0 chrXIV 135401 . C T 3293.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.33;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3293,363,0 chrXIV 135598 . T C 3307.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.45;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3307,366,0 chrXIV 135687 . A T 2978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=129;Dels=0.00;FS=3.185;HaplotypeScore=14.5893;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.996;QD=23.09;ReadPosRankSum=1.705;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3011,330,0 chrXIV 135753 . A G 2399 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.04;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2432,267,0 chrXIV 135908 . G A 116.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;DP=162;Dels=0.00;FS=3.978;HaplotypeScore=155.8838;MLEAC=1;MLEAF=0.500;MQ=51.15;MQ0=5;MQRankSum=1.217;QD=0.72;ReadPosRankSum=2.187;SB=-1.358e+03 GT:AD:DP:GQ:PL 0/1:5,155:162:45:146,0,45 chrXIV 135954 . C T 3063 filter AC=2;AF=1.00;AN=2;DP=175;Dels=0.01;FS=0.000;HaplotypeScore=34.3515;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=5;QD=17.50;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3096,336,0 chrXIV 136021 . G A 3965.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.66;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3965,426,0 chrXIV 136113 . T C 4799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=207;Dels=0.00;FS=6.042;HaplotypeScore=15.3941;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-2.044;QD=23.18;ReadPosRankSum=2.354;SB=-2.426e+03 GT:AD:DP:GQ:PL 1/1:2,204:207:99:4799,543,0 chrXIV 136306 . A G 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.7643;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.039;QD=20.99;ReadPosRankSum=1.712;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:2,174:178:99:3736,426,0 chrXIV 136884 . C T 2032 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.09;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2065,231,0 chrXIV 137272 . C T 4083.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.62;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4083,453,0 chrXIV 137285 . A G 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.389;DP=200;Dels=0.00;FS=9.140;HaplotypeScore=13.9347;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=1.018;QD=19.25;ReadPosRankSum=3.328;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:4,195:200:99:3849,438,0 chrXIV 137365 . G T 4248.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.72;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4248,471,0 chrXIV 137407 . C G 2769 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=17.20;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2802,324,0 chrXIV 137413 . G A 2858 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=18.20;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2891,327,0 chrXIV 137715 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.60;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2546,279,0 chrXIV 137806 . C T 2829 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=21.60;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2862,321,0 chrXIV 137823 . G A 2972 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=21.54;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3005,330,0 chrXIV 138022 . T C 3102 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=20.54;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3135,357,0 chrXIV 138025 . T C 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=3.367;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=0.570;QD=19.46;ReadPosRankSum=1.709;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2991,345,0 chrXIV 138082 . G A 3488.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.93;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3488,396,0 chrXIV 138172 . G T 3681.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.90;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3681,417,0 chrXIV 138467 . C T 3026 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.41;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3059,342,0 chrXIV 138817 . A C 6106.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.12;SB=-3.310e+03 GT:AD:DP:GQ:PL 1/1:0,275:276:99:6106,687,0 chrXIV 138826 . A G 5782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=272;Dels=0.00;FS=3.379;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.911;QD=21.26;ReadPosRankSum=1.706;SB=-3.183e+03 GT:AD:DP:GQ:PL 1/1:1,269:272:99:5782,654,0 chrXIV 139125 . C T 3881.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.3319;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.90;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:3881,420,0 chrXIV 139221 . G A 3381.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.40;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3381,375,0 chrXIV 139741 . G A 5863.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=16.9409;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.55;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:5863,636,0 chrXIV 140230 . G A 3350.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=20.43;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3350,375,0 chrXIV 140238 . T C 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=4.665;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=1.625;QD=18.65;ReadPosRankSum=1.646;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3054,360,0 chrXIV 140328 . T C 2387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=113;Dels=0.00;FS=7.597;HaplotypeScore=8.6750;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;MQRankSum=1.022;QD=21.12;ReadPosRankSum=2.406;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2420,276,0 chrXIV 140385 . G A 2186 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=1.5449;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;QD=21.02;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2219,246,0 chrXIV 140391 . G A 2053 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;QD=20.95;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2086,237,0 chrXIV 140393 . A G 2012 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;QD=20.53;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2045,237,0 chrXIV 140432 . T G 977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.242;DP=76;Dels=0.00;FS=14.184;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=36.43;MQ0=0;MQRankSum=1.662;QD=12.86;ReadPosRankSum=3.336;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:4,71:76:99:1010,117,0 chrXIV 140444 . T C 1000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=60.4318;MLEAC=2;MLEAF=1.00;MQ=33.12;MQ0=0;MQRankSum=-1.014;QD=12.20;ReadPosRankSum=1.690;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1033,117,0 chrXIV 140470 . G A 1209 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;QD=11.74;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1242,141,0 chrXIV 140504 . C T 1623 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;QD=13.09;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1656,189,0 chrXIV 140527 . T A 1637 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=0;QD=14.88;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1670,183,0 chrXIV 140549 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.47;MQ0=0;QD=14.91;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1539,183,0 chrXIV 140559 . G A 1334 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.48;MQ0=0;QD=13.61;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1367,153,0 chrXIV 140577 . A T 852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=5.389;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=30.67;MQ0=0;MQRankSum=-1.649;QD=10.27;ReadPosRankSum=1.690;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:885,102,0 chrXIV 140587 . A T 720 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=5.414;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=0;MQRankSum=-1.732;QD=9.00;ReadPosRankSum=1.689;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:87:753,87,0 chrXIV 140590 . T G 633 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.35;MQ0=0;QD=8.22;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:81:666,81,0 chrXIV 140596 . T C 677 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=0;MQRankSum=-0.214;QD=9.27;ReadPosRankSum=1.685;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:87:710,87,0 chrXIV 140603 . C T 766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=81;Dels=0.00;FS=4.771;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=0;MQRankSum=1.433;QD=9.46;ReadPosRankSum=1.518;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:93:799,93,0 chrXIV 140614 . T G 806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=0;MQRankSum=-1.732;QD=10.07;ReadPosRankSum=1.689;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:839,99,0 chrXIV 140615 . G A 911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.48;MQ0=0;MQRankSum=-1.647;QD=11.25;ReadPosRankSum=1.647;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:944,108,0 chrXIV 140787 . G T 2779 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=23.55;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2812,312,0 chrXIV 140864 . T C 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=110;Dels=0.00;FS=5.794;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.679;QD=21.24;ReadPosRankSum=2.845;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:3,107:110:99:2369,264,0 chrXIV 140943 . A G 2952 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.06;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2985,336,0 chrXIV 141053 . C G 3281.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.3676;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,138:143:99:3281,363,0 chrXIV 141630 . C A 3885.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.6146;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.59;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3885,423,0 chrXIV 141816 . T C 4221.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.7253;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.68;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4221,465,0 chrXIV 141890 . A G 4531.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.6207;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.36;SB=-2.274e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4531,507,0 chrXIV 142022 . C T 3463.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.63;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3463,375,0 chrXIV 142126 . G A 3730.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.34;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3730,405,0 chrXIV 142664 . G A 4739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.217;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.1033;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.524;QD=24.18;ReadPosRankSum=0.666;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4739,487,0 chrXIV 142947 . T G 4076.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.40;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4076,474,0 chrXIV 143388 . G A 3735.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.7032;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.64;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3735,414,0 chrXIV 143955 . G A 2240 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.96;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2273,258,0 chrXIV 144084 . A G 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=2.7021;MLEAC=2;MLEAF=1.00;MQ=34.91;MQ0=0;MQRankSum=-1.347;QD=0.63;ReadPosRankSum=1.684;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:9:78,9,0 chrXIV 144087 . A T 27.77 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.550;DP=7;Dels=0.00;FS=8.451;HaplotypeScore=1.9134;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.97;ReadPosRankSum=1.754;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,3:7:6:59,6,0 chrXIV 144250 . G A 2146 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.84;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2179,231,0 chrXIV 144427 . C T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.88;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3589,393,0 chrXIV 144565 . G A 4309.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4309,465,0 chrXIV 144997 . T C 4871.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.09;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4871,549,0 chrXIV 145227 . T C 2870 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.10;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2903,330,0 chrXIV 145293 . G T 2059 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.01;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2092,228,0 chrXIV 145312 . C G 1703 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.71;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1736,198,0 chrXIV 145314 . A G 1647 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=17.71;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1680,192,0 chrXIV 145411 . A G 1599 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.77;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1632,186,0 chrXIV 146019 . G A 4518.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=21.5858;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.48;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4518,510,0 chrXIV 146052 . C T 4785.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=24.05;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4785,528,0 chrXIV 146337 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3269,351,0 chrXIV 146766 . G A 2740 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=23.22;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2773,300,0 chrXIV 146788 . G C 2095 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=16.12;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,124:130:99:2128,243,0 chrXIV 146794 . T G 2139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=-0.102;QD=15.73;ReadPosRankSum=1.707;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2172,252,0 chrXIV 146848 . A C 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=133;Dels=0.00;FS=4.804;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=-0.117;QD=16.52;ReadPosRankSum=1.654;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2230,249,0 chrXIV 146890 . T C 2596 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.39;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2629,297,0 chrXIV 146914 . T C 2357 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.03;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2390,270,0 chrXIV 147716 . C G 4071.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=22.13;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4071,456,0 chrXIV 147866 . T C 4283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=198;Dels=0.00;FS=3.424;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.542;QD=21.63;ReadPosRankSum=1.715;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4283,483,0 chrXIV 147956 . A G 4082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.985;DP=199;Dels=0.00;FS=6.012;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-1.187;QD=20.51;ReadPosRankSum=2.884;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:4082,459,0 chrXIV 147957 . T C 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.407;DP=199;Dels=0.00;FS=4.590;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-0.648;QD=19.62;ReadPosRankSum=3.407;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:4,194:199:99:3904,456,0 chrXIV 147984 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=17.50;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:3553,399,0 chrXIV 148139 . G A 4978.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.73;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4978,549,0 chrXIV 148331 . T C 7047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=296;Dels=0.00;FS=2.562;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.664;QD=23.81;ReadPosRankSum=2.881;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:3,293:296:99:7047,795,0 chrXIV 148408 . C T 5045.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=15.0747;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.13;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:5045,564,0 chrXIV 148787 . A G 4569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=194;Dels=0.00;FS=3.101;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.714;QD=23.55;ReadPosRankSum=1.714;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4569,528,0 chrXIV 148823 . A G 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.613;QD=23.93;ReadPosRankSum=1.648;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3925,438,0 chrXIV 149027 . C T 3132 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3165,354,0 chrXIV 149120 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.93;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2942,327,0 chrXIV 149537 . T C 3917.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.88;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3917,444,0 chrXIV 150779 . G A 2552 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2585,288,0 chrXIV 152252 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.65;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2138,234,0 chrXIV 152333 . C T 2847 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.34;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2880,315,0 chrXIV 152355 . T G 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.223;QD=24.03;ReadPosRankSum=2.411;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:3085,336,0 chrXIV 152505 . A G 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.405;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.703;QD=21.78;ReadPosRankSum=1.707;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3039,357,0 chrXIV 152957 . A G 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=114;Dels=0.00;FS=4.620;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.211;QD=23.48;ReadPosRankSum=1.701;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2710,303,0 chrXIV 153086 . G A 3684.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.17;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3684,414,0 chrXIV 153164 . G A 3759.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.41;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3759,405,0 chrXIV 153222 . A G 3912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.362;QD=21.73;ReadPosRankSum=1.693;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:3912,447,0 chrXIV 153437 . C T 3935.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.4337;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.29;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3935,441,0 chrXIV 153476 . C T 3700.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.57;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3700,417,0 chrXIV 153554 . C T 3140 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.4188;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.59;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3173,348,0 chrXIV 153614 . G A 2752 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.17;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2785,306,0 chrXIV 153630 . T G 2483 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=18.81;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2516,285,0 chrXIV 153647 . G A 2444 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=18.38;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2477,282,0 chrXIV 153686 . G A 2947 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=18.77;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2980,333,0 chrXIV 153810 . C T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=24.68;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3726,408,0 chrXIV 153950 . T C 4303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=179;Dels=0.00;FS=4.091;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.480;QD=24.04;ReadPosRankSum=1.693;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,176:179:99:4303,492,0 chrXIV 154013 . C T 3011 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.34;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3044,336,0 chrXIV 154017 . G T 2777 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=19.98;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2810,303,0 chrXIV 154061 . G A 2814 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=19.96;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2847,309,0 chrXIV 154151 . A G 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.316;QD=23.44;ReadPosRankSum=1.642;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2729,306,0 chrXIV 154179 . C A 2492 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.02;FS=0.000;HaplotypeScore=7.8696;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=19.94;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2525,273,0 chrXIV 154409 . G T 2609 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.69;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2642,294,0 chrXIV 154433 . C T 2542 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.98;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2575,282,0 chrXIV 154484 . A G 2196 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.53;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2229,255,0 chrXIV 154604 . C G 3423.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7950;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=22.97;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3423,387,0 chrXIV 154617 . G T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.4407;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=23.73;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3559,384,0 chrXIV 154799 . A G 2555 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.5169;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=-0.767;QD=20.94;ReadPosRankSum=1.704;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2588,288,0 chrXIV 154805 . A G 2364 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=114;Dels=0.00;FS=2.767;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=-1.143;QD=20.74;ReadPosRankSum=2.319;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2397,270,0 chrXIV 154807 . A C 2330 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=0.062;QD=20.80;ReadPosRankSum=1.670;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2363,261,0 chrXIV 154877 . A T 2195 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=19.25;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2228,243,0 chrXIV 155098 . A C 2266 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.8322;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.22;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2299,264,0 chrXIV 155171 . T A 2557 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=24.12;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2590,285,0 chrXIV 155180 . C T 2382 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=22.90;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2415,267,0 chrXIV 155190 . T C 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=0.536;QD=21.06;ReadPosRankSum=1.671;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2413,270,0 chrXIV 155327 . G A 3015 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.74;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3048,336,0 chrXIV 155361 . C A 2469 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.7545;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.66;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2502,276,0 chrXIV 155553 . C T 2186 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2219,243,0 chrXIV 155840 . T C 4285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=187;Dels=0.00;FS=6.091;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.489;QD=22.91;ReadPosRankSum=2.930;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:3,184:187:99:4285,480,0 chrXIV 156055 . G A 3832.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3832,414,0 chrXIV 156212 . T C 3517.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.12;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3517,402,0 chrXIV 156407 . C T 3132 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.45;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3165,360,0 chrXIV 156693 . T C 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-0.359;QD=21.30;ReadPosRankSum=1.701;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2440,276,0 chrXIV 156752 . C A 1768 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=17.00;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1801,192,0 chrXIV 156754 . C G 1669 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=16.05;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1702,192,0 chrXIV 156755 . C T 1770 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;QD=16.86;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1803,192,0 chrXIV 156760 . T C 1711 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.062;DP=119;Dels=0.00;FS=15.385;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;MQRankSum=-2.350;QD=14.38;ReadPosRankSum=4.087;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:6,113:119:99:1744,201,0 chrXIV 156803 . T G 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;MQRankSum=-1.474;QD=17.62;ReadPosRankSum=1.706;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2394,270,0 chrXIV 157216 . T C 2268 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.00;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2301,261,0 chrXIV 157421 . T A 28.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.207;DP=100;Dels=0.00;FS=11.271;HaplotypeScore=78.9754;MLEAC=1;MLEAF=0.500;MQ=52.45;MQ0=0;MQRankSum=1.271;QD=0.28;ReadPosRankSum=-5.012;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:87,13:100:30:58,0,30 chrXIV 157516 . A G 1411 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=17.42;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1444,162,0 chrXIV 157526 . C G 1184 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.7648;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=14.80;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1217,141,0 chrXIV 157537 . T A 951 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=4.6891;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=11.60;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:984,108,0 chrXIV 157553 . T C 1178 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=12.53;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1211,132,0 chrXIV 157659 . A G 1798 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=20.67;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1831,213,0 chrXIV 157663 . C T 1854 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=22.07;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1887,207,0 chrXIV 157674 . T C 1836 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=20.18;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1869,210,0 chrXIV 157776 . T C 3046 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.4047;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.40;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3079,342,0 chrXIV 157896 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=22.71;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3076,327,0 chrXIV 157910 . C T 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=3.5538;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;MQRankSum=-0.423;QD=20.44;ReadPosRankSum=0.232;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:1,126:130:99:2711,297,0 chrXIV 157917 . T G 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.271;DP=131;Dels=0.00;FS=5.288;HaplotypeScore=5.4886;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=-0.261;QD=19.49;ReadPosRankSum=3.311;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:4,127:131:99:2586,297,0 chrXIV 158123 . C T 3048 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.88;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3081,348,0 chrXIV 158130 . T C 2985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=3.193;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-1.566;QD=20.45;ReadPosRankSum=1.685;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3018,336,0 chrXIV 158538 . A G 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=141;Dels=0.00;FS=6.629;HaplotypeScore=7.8442;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.375;QD=22.09;ReadPosRankSum=2.380;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3147,360,0 chrXIV 159120 . C G 3337.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=18.96;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3337,390,0 chrXIV 159157 . G A 2746 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=18.94;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2779,303,0 chrXIV 159166 . A T 2608 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=18.90;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2641,294,0 chrXIV 159540 . G A 2679 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.90;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2712,300,0 chrXIV 159674 . C T 2748 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.36;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2781,312,0 chrXIV 159685 . T G 2546 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.29;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2579,297,0 chrXIV 159750 . C G 3155 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.17;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3188,357,0 chrXIV 160012 . C G 3218.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.17;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3251,369,0 chrXIV 160488 . G A 2902 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2935,318,0 chrXIV 161070 . T C 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=173;Dels=0.00;FS=3.605;HaplotypeScore=13.4961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.060;QD=21.11;ReadPosRankSum=1.692;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3652,411,0 chrXIV 161277 . A G 3768.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.12;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3768,441,0 chrXIV 161474 . G A 3503.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.5633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3503,378,0 chrXIV 161874 . C T 2808 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.46;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2841,309,0 chrXIV 162100 . C T 2511 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2544,276,0 chrXIV 162171 . G A 2417 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.48;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2450,264,0 chrXIV 162358 . C A 2911 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.10;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2944,336,0 chrXIV 162494 . C A 3003 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.02;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3036,330,0 chrXIV 163754 . G A 3524.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3524,372,0 chrXIV 163817 . G A 2598 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.47;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2631,300,0 chrXIV 163940 . C T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3335,366,0 chrXIV 164500 . C T 3621.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3621,393,0 chrXIV 165144 . T G 3478.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.74;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3478,405,0 chrXIV 165259 . C T 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=145;Dels=0.01;FS=8.130;HaplotypeScore=6.3455;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=-0.095;QD=18.16;ReadPosRankSum=2.207;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:2666,291,0 chrXIV 165261 . T A 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.219;DP=140;Dels=0.00;FS=8.318;HaplotypeScore=4.6148;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=1.367;QD=17.84;ReadPosRankSum=2.929;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:4,136:140:99:2530,288,0 chrXIV 165505 . A G 3775.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.30;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3775,420,0 chrXIV 165522 . G A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.28;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3520,384,0 chrXIV 165732 . T C 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-1.153;QD=22.06;ReadPosRankSum=2.384;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:2,110:115:99:2570,291,0 chrXIV 166043 . G T 4405.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.7345;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.20;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4405,480,0 chrXIV 166504 . G A 4331.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.80;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4331,483,0 chrXIV 166576 . A G 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.315;QD=20.89;ReadPosRankSum=1.706;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2811,318,0 chrXIV 166692 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=146;Dels=0.00;FS=6.490;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.077;QD=22.12;ReadPosRankSum=2.415;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:2,141:146:99:3264,378,0 chrXIV 167208 . G A 2503 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2536,276,0 chrXIV 167488 . G A 5281.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.9109;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.38;SB=-3.130e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5281,565,0 chrXIV 167536 . C T 4992.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=22.7906;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.99;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4992,555,0 chrXIV 167835 . C T 3388.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=23.05;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3388,360,0 chrXIV 167850 . A C 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=161;Dels=0.00;FS=2.994;HaplotypeScore=12.1376;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-1.805;QD=21.56;ReadPosRankSum=2.419;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3471,387,0 chrXIV 167984 . T G 4211.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-0.503;QD=21.93;ReadPosRankSum=2.964;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:4211,492,0 chrXIV 168178 . T C 4215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=5.409;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=1.107;QD=20.56;ReadPosRankSum=1.698;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4215,471,0 chrXIV 168578 . A G 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.281;DP=158;Dels=0.00;FS=13.499;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.599;QD=22.77;ReadPosRankSum=3.325;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:4,153:158:99:3597,408,0 chrXIV 168712 . T C 3218.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.35;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3251,363,0 chrXIV 168745 . T C 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=132;Dels=0.00;FS=4.013;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.912;QD=21.17;ReadPosRankSum=1.706;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2828,312,0 chrXIV 169024 . G A 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.669;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.304;QD=21.13;ReadPosRankSum=-1.398;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2547,274,0 chrXIV 169220 . C T 2867 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=23.12;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2900,318,0 chrXIV 169290 . A G 3612.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.72;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3612,399,0 chrXIV 169444 . C T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=21.09;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3543,390,0 chrXIV 169466 . A C 2969 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.842;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;MQRankSum=-0.436;QD=19.15;ReadPosRankSum=1.665;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3002,351,0 chrXIV 169469 . G T 2884 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=19.23;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2917,324,0 chrXIV 169470 . A T 2762 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=18.41;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2795,321,0 chrXIV 169528 . T G 2081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=122;Dels=0.00;FS=7.144;HaplotypeScore=6.8727;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=0.543;QD=17.06;ReadPosRankSum=2.204;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:2,118:122:99:2114,237,0 chrXIV 169663 . A G 3659.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=21.40;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3659,411,0 chrXIV 169666 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=20.66;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3512,408,0 chrXIV 169711 . C T 2840 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=20.14;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2873,327,0 chrXIV 169784 . A C 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.802;HaplotypeScore=11.4721;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=1.680;QD=22.53;ReadPosRankSum=1.706;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3052,339,0 chrXIV 169822 . G T 2856 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.55;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2889,315,0 chrXIV 169829 . T A 2875 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=20.99;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2908,315,0 chrXIV 169922 . A G 3159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.475;HaplotypeScore=22.5075;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.954;QD=22.89;ReadPosRankSum=1.707;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3192,369,0 chrXIV 169984 . A G 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.398;DP=145;Dels=0.00;FS=12.982;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=0.735;QD=19.10;ReadPosRankSum=3.398;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:4,140:145:99:2803,318,0 chrXIV 169986 . A C 2878 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5983;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=19.85;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2911,321,0 chrXIV 170122 . T C 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.528;QD=23.24;ReadPosRankSum=1.690;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3812,432,0 chrXIV 170338 . C T 3705.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.30;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3705,399,0 chrXIV 170353 . T C 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.236;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-0.153;QD=21.87;ReadPosRankSum=1.710;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3478,396,0 chrXIV 170728 . A T 3766.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3766,414,0 chrXIV 170790 . A G 3773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.093;QD=22.59;ReadPosRankSum=1.691;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3773,414,0 chrXIV 171097 . C T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.92;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3301,369,0 chrXIV 171474 . A G 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=125;Dels=0.00;FS=4.953;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.653;QD=22.17;ReadPosRankSum=1.704;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,121:125:99:2804,318,0 chrXIV 171552 . C A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.3227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3432,375,0 chrXIV 171915 . A G 3131 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.01;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3164,354,0 chrXIV 171927 . A G 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=147;Dels=0.00;FS=2.570;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=0.637;QD=20.37;ReadPosRankSum=2.939;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3027,342,0 chrXIV 172041 . C G 3137 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=21.63;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3170,354,0 chrXIV 172056 . G A 2895 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=20.98;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2928,324,0 chrXIV 172062 . T A 2778 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=21.21;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2811,312,0 chrXIV 172322 . A C 2042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=103;Dels=0.00;FS=3.188;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=-0.624;QD=19.83;ReadPosRankSum=1.697;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,99:103:99:2075,234,0 chrXIV 172341 . A G 1782 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.7464;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=17.82;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1815,201,0 chrXIV 172376 . T C 1315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.279;DP=107;Dels=0.00;FS=8.975;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=-0.120;QD=12.29;ReadPosRankSum=4.139;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:7,100:107:99:1348,110,0 chrXIV 172441 . G A 2253 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.0246;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.09;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2286,258,0 chrXIV 172603 . T C 5286.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=25.05;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:5286,588,0 chrXIV 173404 . G A 5500.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.8112;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.34;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5500,597,0 chrXIV 174011 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.45;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3268,351,0 chrXIV 174382 . A G 2889 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.30;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2922,330,0 chrXIV 174599 . A G 2888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=143;Dels=0.00;FS=6.113;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-1.659;QD=20.20;ReadPosRankSum=2.381;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2921,327,0 chrXIV 174603 . G T 2936 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.84;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2969,321,0 chrXIV 174821 . A G 3328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=150;Dels=0.00;FS=6.412;HaplotypeScore=10.0227;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.241;QD=22.19;ReadPosRankSum=2.416;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:2,146:150:99:3328,369,0 chrXIV 174891 . T A 2846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1358;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=1.150;QD=22.59;ReadPosRankSum=0.540;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2879,309,0 chrXIV 174916 . A T 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.624;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.873;QD=21.04;ReadPosRankSum=1.678;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2747,297,0 chrXIV 174935 . C T 2899 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.72;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2932,327,0 chrXIV 174982 . G T 3200 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.4329;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.51;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3233,351,0 chrXIV 175088 . T A 2784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=143;Dels=0.00;FS=3.030;HaplotypeScore=5.0773;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-0.473;QD=19.47;ReadPosRankSum=2.381;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2817,315,0 chrXIV 175091 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.4933;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.25;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2920,324,0 chrXIV 175243 . C G 2604 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=13.2194;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=17.48;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2637,303,0 chrXIV 175274 . C T 3327.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.4825;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.19;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3327,363,0 chrXIV 175559 . T A 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.7745;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.030;QD=22.05;ReadPosRankSum=1.666;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3506,390,0 chrXIV 175973 . A G 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.0533;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.631;QD=21.87;ReadPosRankSum=2.364;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2548,288,0 chrXIV 176348 . G A 2784 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.58;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2817,315,0 chrXIV 176366 . G A 2800 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=24.14;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2833,306,0 chrXIV 176676 . T C 2302 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.57;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2335,258,0 chrXIV 176801 . G A 2593 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2626,294,0 chrXIV 177005 . C T 2435 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2468,279,0 chrXIV 177137 . A G 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=3.335;HaplotypeScore=7.1017;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.400;QD=24.36;ReadPosRankSum=1.704;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3078,348,0 chrXIV 177269 . G A 2734 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.85;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2767,300,0 chrXIV 177299 . A G 2217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.494;DP=102;Dels=0.00;FS=3.274;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.698;QD=21.74;ReadPosRankSum=1.664;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2250,255,0 chrXIV 177500 . A G 2331 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.08;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2364,267,0 chrXIV 177682 . A G 3077 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9658;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.22;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3110,348,0 chrXIV 177761 . G A 3192 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3225,351,0 chrXIV 177881 . T C 3711.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3711,429,0 chrXIV 178001 . G A 3288.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.35;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3288,363,0 chrXIV 178272 . A G 2698 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2731,312,0 chrXIV 178431 . G C 3786.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.75;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3786,426,0 chrXIV 178487 . G A 2620 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.60;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2653,291,0 chrXIV 178556 . C T 3045 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3078,339,0 chrXIV 179264 . T C 3171 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.0428;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.65;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3204,366,0 chrXIV 179559 . A T 3086 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.71;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3119,348,0 chrXIV 179985 . G A 2551 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.57;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2584,288,0 chrXIV 180002 . G A 2720 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.85;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2753,303,0 chrXIV 180219 . G A 4409.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.6892;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.96;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4409,483,0 chrXIV 180736 . C T 3990.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.45;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3990,429,0 chrXIV 180742 . C A 3749.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.18;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3749,405,0 chrXIV 180909 . G T 2754 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.95;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2787,312,0 chrXIV 181057 . A T 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=107;Dels=0.00;FS=5.250;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.708;QD=21.53;ReadPosRankSum=2.897;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:3,104:107:99:2337,264,0 chrXIV 181382 . T C 2417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.6292;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.233;QD=18.31;ReadPosRankSum=1.680;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2450,273,0 chrXIV 181532 . T C 3337.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.0294;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.53;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3337,372,0 chrXIV 181565 . G A 3769.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=22.57;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3769,411,0 chrXIV 181925 . T C 4459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=197;Dels=0.00;FS=6.177;HaplotypeScore=15.7031;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.804;QD=22.63;ReadPosRankSum=2.400;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4459,495,0 chrXIV 182084 . C A 3675.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=18.4229;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3675,405,0 chrXIV 182327 . G C 2430 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.71;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2463,285,0 chrXIV 182372 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.01;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3082,333,0 chrXIV 182462 . G A 2813 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2846,315,0 chrXIV 182621 . T G 2934 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.92;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2967,333,0 chrXIV 183060 . T C 2973 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3006,333,0 chrXIV 183225 . C T 2930 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2963,321,0 chrXIV 184035 . C T 3798.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=17.3487;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.99;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:3798,435,0 chrXIV 184065 . C T 4230.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.8344;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.94;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4230,465,0 chrXIV 184146 . G A 3589.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.3620;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.16;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3589,396,0 chrXIV 184212 . A G 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.083;QD=20.96;ReadPosRankSum=1.701;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2401,276,0 chrXIV 184449 . G A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.3158;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.10;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3471,381,0 chrXIV 184629 . G A 4303.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4303,486,0 chrXIV 184882 . T C 5456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=235;Dels=0.00;FS=8.803;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.725;QD=23.22;ReadPosRankSum=3.283;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:4,231:235:99:5456,612,0 chrXIV 184944 . A G 5507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=16.9945;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.397;QD=23.84;ReadPosRankSum=1.687;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5507,624,0 chrXIV 184992 . G A 5081.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=17.9530;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.99;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5081,552,0 chrXIV 185193 . C T 3069 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.24;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3102,339,0 chrXIV 185309 . A G 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=3.826;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.265;QD=23.98;ReadPosRankSum=1.670;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2719,312,0 chrXIV 185402 . A C 3950.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=22.07;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3950,444,0 chrXIV 185417 . C T 3971.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.4964;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.46;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3971,441,0 chrXIV 185512 . C T 4637.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.34;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4637,522,0 chrXIV 185626 . A G 5862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=11.7299;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.433;QD=22.90;ReadPosRankSum=2.382;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:2,254:256:99:5862,657,0 chrXIV 185701 . G A 4245.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.3233;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.46;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4245,456,0 chrXIV 185846 . T C 4086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=181;Dels=0.00;FS=2.891;HaplotypeScore=9.5517;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.047;QD=22.57;ReadPosRankSum=2.314;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4086,465,0 chrXIV 185896 . A G 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=3.010;HaplotypeScore=5.8957;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.217;QD=22.55;ReadPosRankSum=1.689;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3653,411,0 chrXIV 186892 . G T 1778 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=18.14;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1811,198,0 chrXIV 186897 . C T 1813 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=18.13;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1846,201,0 chrXIV 186921 . A G 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=1.072;QD=17.47;ReadPosRankSum=1.666;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:1885,213,0 chrXIV 187217 . A T 2600 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.30;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2633,288,0 chrXIV 187730 . T A 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=2.824;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.305;QD=23.52;ReadPosRankSum=2.314;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2597,282,0 chrXIV 187782 . A G 1837 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1870,210,0 chrXIV 187825 . A G 1177 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=17.83;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1210,141,0 chrXIV 187884 . A C 1889 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.68;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1922,222,0 chrXIV 187910 . A G 2168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=106;Dels=0.00;FS=2.486;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.391;QD=20.45;ReadPosRankSum=2.858;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:3,103:106:99:2201,246,0 chrXIV 187965 . A C 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.121;DP=92;Dels=0.00;FS=6.676;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.671;QD=20.13;ReadPosRankSum=2.395;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:2,88:92:99:1885,216,0 chrXIV 188341 . T G 5411.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=22.2838;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.19;SB=-3.106e+03 GT:AD:DP:GQ:PL 1/1:0,264:268:99:5411,633,0 chrXIV 188387 . C T 4988.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=12.6093;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.78;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4988,549,0 chrXIV 188854 . C A 3122 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=17.4406;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.95;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3155,345,0 chrXIV 188893 . A G 3587.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=18.1447;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.04;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3587,405,0 chrXIV 188962 . G A 5057.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.4949;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.74;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5057,555,0 chrXIV 189004 . G A 5170.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=19.4996;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.61;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5170,573,0 chrXIV 189221 . C T 6948.01 PASS AC=2;AF=1.00;AN=2;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=16.2340;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.01;SB=-3.307e+03 GT:AD:DP:GQ:PL 1/1:0,300:302:99:6948,754,0 chrXIV 189381 . G A 4492.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.1830;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4492,489,0 chrXIV 189445 . T C 4266.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.77;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4266,498,0 chrXIV 189694 . T C 4061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.5477;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.680;QD=24.03;ReadPosRankSum=1.711;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:4061,462,0 chrXIV 189748 . T C 3900.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.0292;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.94;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3900,441,0 chrXIV 189892 . T C 3889.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=188;Dels=0.00;FS=3.013;HaplotypeScore=9.0391;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.598;QD=20.69;ReadPosRankSum=2.371;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:2,185:188:99:3889,447,0 chrXIV 189922 . C G 3308.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=17.78;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3308,387,0 chrXIV 189937 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=16.38;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,192:196:99:3244,369,0 chrXIV 189981 . A G 4074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=219;Dels=0.00;FS=3.029;HaplotypeScore=16.9010;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.585;QD=18.60;ReadPosRankSum=2.359;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:2,214:219:99:4074,471,0 chrXIV 190153 . G A 4254.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.9543;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.63;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4254,468,0 chrXIV 190588 . T C 5619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=261;Dels=0.00;FS=8.625;HaplotypeScore=23.0072;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.585;QD=21.53;ReadPosRankSum=3.381;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:4,257:261:99:5619,660,0 chrXIV 190801 . G A 4837.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.79;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4837,528,0 chrXIV 190876 . G A 4016.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.28;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4016,432,0 chrXIV 190879 . A G 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=201;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.589;QD=20.25;ReadPosRankSum=2.412;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4071,456,0 chrXIV 190964 . A T 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=19.3746;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.199;QD=20.59;ReadPosRankSum=1.710;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3265,357,0 chrXIV 191137 . A G 1349 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.48;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1382,156,0 chrXIV 191241 . A G 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.544;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.5962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.437;QD=22.47;ReadPosRankSum=1.705;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,128:132:99:2999,313,0 chrXIV 191551 . T A 2770 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.16;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2803,309,0 chrXIV 192093 . C T 2852 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.67;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2885,312,0 chrXIV 192737 . T A 3400.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.106;DP=153;Dels=0.00;FS=2.962;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.860;QD=22.22;ReadPosRankSum=2.417;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3400,375,0 chrXIV 192995 . C T 4166.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4166,453,0 chrXIV 193628 . T G 2633 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2666,303,0 chrXIV 193744 . T C 2249 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2282,264,0 chrXIV 193778 . C A 2412 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2445,270,0 chrXIV 194047 . A G 2110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=4.309;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.837;QD=23.44;ReadPosRankSum=1.693;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2143,240,0 chrXIV 195019 . G A 2738 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.15;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2771,312,0 chrXIV 195046 . A C 2750 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.00;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2783,315,0 chrXIV 195091 . G A 2256 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.34;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2289,246,0 chrXIV 195206 . T C 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.039;QD=22.84;ReadPosRankSum=1.701;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2545,288,0 chrXIV 195358 . A C 3390.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7204;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.91;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3390,384,0 chrXIV 195766 . A G 4508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=204;Dels=0.00;FS=6.128;HaplotypeScore=9.5452;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-0.247;QD=22.10;ReadPosRankSum=2.413;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:2,202:204:99:4508,504,0 chrXIV 195974 . A C 2421 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=19.52;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2454,282,0 chrXIV 195994 . G A 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-0.279;QD=18.76;ReadPosRankSum=-0.140;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2416,267,0 chrXIV 196105 . A T 1881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.1131;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=-0.765;QD=16.36;ReadPosRankSum=1.638;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,113:115:99:1914,204,0 chrXIV 196115 . A G 1668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.015;DP=102;Dels=0.00;FS=7.565;HaplotypeScore=1.8519;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;MQRankSum=-1.645;QD=16.35;ReadPosRankSum=4.087;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:6,96:102:99:1701,192,0 chrXIV 196160 . T C 522 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=83;Dels=0.00;FS=6.024;HaplotypeScore=3.6577;MLEAC=2;MLEAF=1.00;MQ=36.02;MQ0=0;MQRankSum=-2.501;QD=6.29;ReadPosRankSum=2.916;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:66:555,66,0 chrXIV 196164 . T C 793 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=36.73;MQ0=0;MQRankSum=-1.440;QD=9.55;ReadPosRankSum=1.690;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:826,99,0 chrXIV 196170 . A C 988 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=3.876;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=37.76;MQ0=0;MQRankSum=0.230;QD=11.76;ReadPosRankSum=1.690;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1021,117,0 chrXIV 196197 . T C 1167 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=14.59;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1200,138,0 chrXIV 196288 . G C 2322 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.22;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2355,264,0 chrXIV 196326 . T G 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=104;Dels=0.00;FS=5.675;HaplotypeScore=3.9342;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=-1.146;QD=20.34;ReadPosRankSum=2.797;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2148,246,0 chrXIV 196345 . G A 1830 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=11.4110;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=18.67;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1863,204,0 chrXIV 196509 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.283;QD=21.67;ReadPosRankSum=1.690;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3576,411,0 chrXIV 196819 . T C 4312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.718;DP=242;Dels=0.00;FS=11.410;HaplotypeScore=2.6559;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=-1.962;QD=17.82;ReadPosRankSum=3.776;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:5,237:242:99:4312,477,0 chrXIV 196822 . G A 4009.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=6.1861;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=15.91;SB=-2.671e+03 GT:AD:DP:GQ:PL 1/1:0,248:252:99:4009,456,0 chrXIV 196834 . G A 4677.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=8.1916;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=17.65;SB=-2.804e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:4677,513,0 chrXIV 197152 . A C 5413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=275;Dels=0.00;FS=2.571;HaplotypeScore=23.3529;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.073;QD=19.68;ReadPosRankSum=2.952;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:3,271:275:99:5413,633,0 chrXIV 197191 . T C 5399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=258;Dels=0.00;FS=4.720;HaplotypeScore=10.3272;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=-0.917;QD=20.93;ReadPosRankSum=1.651;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:1,254:258:99:5399,609,0 chrXIV 197710 . G A 4481.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.3276;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.86;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4481,486,0 chrXIV 197788 . C A 3515.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.01;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=19.97;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3515,387,0 chrXIV 198249 . T C 82.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.670;DP=108;Dels=0.00;FS=2.590;HaplotypeScore=5.4022;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-0.500;QD=0.76;ReadPosRankSum=2.916;SB=-9.463e+02 GT:AD:DP:GQ:PL 1/1:3,104:108:15:115,15,0 chrXIV 198384 . T G 3886.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.33;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3886,441,0 chrXIV 198392 . C T 3902.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.43;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3902,432,0 chrXIV 198443 . A G 4948.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.1858;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.61;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:4948,555,0 chrXIV 198574 . C T 3427.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=19.70;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3427,387,0 chrXIV 198795 . T C 141.06 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;QD=2.88;SB=-3.301e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:21:174,21,0 chrXIV 198796 . G C 148.06 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;QD=3.02;SB=-3.631e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:21:181,21,0 chrXIV 198797 . G A 147.06 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=3.06;SB=-3.321e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:21:180,21,0 chrXIV 198937 . G A 4190.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=22.2615;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.65;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4190,465,0 chrXIV 199012 . T C 4698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=16.7770;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.281;QD=21.85;ReadPosRankSum=1.700;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:4698,531,0 chrXIV 199244 . T C 6802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.783;DP=298;Dels=0.00;FS=17.573;HaplotypeScore=20.8044;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.302;QD=22.83;ReadPosRankSum=3.815;SB=-3.337e+03 GT:AD:DP:GQ:PL 1/1:5,290:298:99:6802,753,0 chrXIV 199403 . A G 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.410;DP=177;Dels=0.00;FS=4.938;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.571;QD=21.03;ReadPosRankSum=3.330;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:4,172:177:99:3722,426,0 chrXIV 199432 . T A 4313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=195;Dels=0.00;FS=5.097;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.804;QD=22.12;ReadPosRankSum=1.696;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4313,471,0 chrXIV 199570 . A G 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=179;Dels=0.00;FS=11.939;HaplotypeScore=20.0952;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.743;QD=22.29;ReadPosRankSum=2.926;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:3,173:179:99:3990,456,0 chrXIV 199813 . G C 5333.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,227:233:99:5333,609,0 chrXIV 199873 . G A 5184.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=14.4499;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.06;SB=-2.876e+03 GT:AD:DP:GQ:PL 1/1:0,232:235:99:5184,579,0 chrXIV 200003 . C T 4681.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.4442;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.52;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4681,510,0 chrXIV 200102 . T C 3608.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0120;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.41;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3608,417,0 chrXIV 200248 . A C 3402.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.38;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3402,396,0 chrXIV 200328 . G A 3560.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.1017;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.68;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3560,390,0 chrXIV 200425 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.69;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2950,330,0 chrXIV 201078 . T G 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=146;Dels=0.00;FS=4.085;HaplotypeScore=4.7316;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.234;QD=21.02;ReadPosRankSum=1.708;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3102,357,0 chrXIV 201148 . G A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.9859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.27;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3283,360,0 chrXIV 201183 . T C 3527.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.99;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3527,402,0 chrXIV 201465 . C T 4307.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.01;FS=0.000;HaplotypeScore=22.1396;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.54;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4307,459,0 chrXIV 201944 . C A 2148 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=20.07;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2181,237,0 chrXIV 201965 . T C 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=98;Dels=0.00;FS=6.990;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=-0.966;QD=19.15;ReadPosRankSum=1.696;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:1,94:98:99:1910,216,0 chrXIV 201973 . C T 1683 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=21.04;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1716,192,0 chrXIV 201993 . C T 1400 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.67;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1433,162,0 chrXIV 202224 . A C 3294.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.40;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3294,366,0 chrXIV 202388 . G A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.56;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3577,411,0 chrXIV 202394 . G A 3732.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=21.57;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3732,408,0 chrXIV 202414 . T A 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=171;Dels=0.00;FS=3.036;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-0.094;QD=19.29;ReadPosRankSum=2.362;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3298,366,0 chrXIV 202510 . T C 3480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=3.257;HaplotypeScore=8.9816;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-0.606;QD=21.22;ReadPosRankSum=1.711;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3480,399,0 chrXIV 202679 . A T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=20.63;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3610,396,0 chrXIV 202690 . G A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.51;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3609,393,0 chrXIV 203039 . T A 4946.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.2524;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.00;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4946,549,0 chrXIV 203351 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.38;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3336,360,0 chrXIV 203363 . T C 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.270;QD=19.30;ReadPosRankSum=1.710;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3025,348,0 chrXIV 203441 . T C 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=182;Dels=0.00;FS=6.015;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.227;QD=21.17;ReadPosRankSum=2.950;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:3,179:182:99:3853,435,0 chrXIV 203744 . T G 4373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=208;Dels=0.00;FS=10.645;HaplotypeScore=17.0834;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.675;QD=21.02;ReadPosRankSum=2.937;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:3,204:208:99:4373,504,0 chrXIV 204260 . G A 2975 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=18.48;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3008,333,0 chrXIV 204270 . G A 2861 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=18.46;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2894,318,0 chrXIV 204288 . G A 2969 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=18.56;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3002,324,0 chrXIV 204319 . T C 1980 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=13.66;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2013,228,0 chrXIV 204325 . T C 2117 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=13.84;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2150,243,0 chrXIV 204368 . G A 2051 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=15.78;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2084,231,0 chrXIV 204375 . A G 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=129;Dels=0.00;FS=3.042;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;MQRankSum=-1.859;QD=14.30;ReadPosRankSum=2.412;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:1878,216,0 chrXIV 204395 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=15.59;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2138,234,0 chrXIV 204437 . T A 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=3.590;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;MQRankSum=-0.996;QD=14.47;ReadPosRankSum=1.689;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2349,273,0 chrXIV 204438 . T A 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=3.590;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;MQRankSum=-1.061;QD=15.07;ReadPosRankSum=1.689;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:2460,273,0 chrXIV 204668 . T C 4308.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.67;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4308,483,0 chrXIV 204752 . C T 3745.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.84;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3745,411,0 chrXIV 205138 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.90;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2968,327,0 chrXIV 205523 . A C 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=168;Dels=0.00;FS=3.021;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.388;QD=20.39;ReadPosRankSum=2.391;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3426,408,0 chrXIV 205561 . T C 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=154;Dels=0.00;FS=3.039;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.044;QD=21.49;ReadPosRankSum=1.709;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,150:154:99:3310,384,0 chrXIV 205874 . C T 5123.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.29;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5123,558,0 chrXIV 207129 . T C 4444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=200;Dels=0.00;FS=6.066;HaplotypeScore=10.4753;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.335;QD=22.22;ReadPosRankSum=2.924;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:3,195:200:99:4444,504,0 chrXIV 207367 . A G 3529.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.711;QD=20.88;ReadPosRankSum=1.691;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3529,387,0 chrXIV 207991 . G A 2857 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.9256;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.28;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2890,315,0 chrXIV 208195 . G A 2680 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8139;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2713,303,0 chrXIV 208275 . C G 2961 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.85;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:2994,333,0 chrXIV 208446 . C T 3303.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3303,363,0 chrXIV 208609 . A G 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.193;QD=23.66;ReadPosRankSum=1.704;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2920,330,0 chrXIV 208820 . C T 2452 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.58;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2485,273,0 chrXIV 208912 . T C 2143 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2176,252,0 chrXIV 209853 . G A 3118 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.12;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3151,357,0 chrXIV 210155 . T C 4374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.3630;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.720;QD=22.66;ReadPosRankSum=2.411;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4374,498,0 chrXIV 210240 . G A 3564.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.60;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3564,384,0 chrXIV 210438 . A T 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.572;DP=158;Dels=0.00;FS=16.426;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-2.502;QD=21.85;ReadPosRankSum=4.754;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:8,150:158:99:3453,344,0 chrXIV 210474 . G A 3500.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.15;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3500,378,0 chrXIV 210617 . A G 3097 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.12;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3130,351,0 chrXIV 210763 . C T 3138 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.78;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3171,354,0 chrXIV 210775 . G A 2838 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.42;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2871,312,0 chrXIV 211824 . C T 2968 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3001,339,0 chrXIV 211886 . A G 2878 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.32;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2911,330,0 chrXIV 211934 . A G 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.335;QD=21.22;ReadPosRankSum=1.704;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2622,303,0 chrXIV 212140 . A C 2338 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.45;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2371,270,0 chrXIV 212165 . C G 2764 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.32;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2797,318,0 chrXIV 212352 . G A 3515.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=22.53;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3515,381,0 chrXIV 212353 . G T 3508.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=22.49;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3508,378,0 chrXIV 212538 . G A 4210.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.5584;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=21.59;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4210,459,0 chrXIV 212540 . C T 4187.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.3471;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=21.58;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4187,453,0 chrXIV 212605 . A T 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=0.859;QD=18.38;ReadPosRankSum=1.679;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2459,273,0 chrXIV 212631 . C T 2715 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.05;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2748,315,0 chrXIV 212858 . G A 2787 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.4520;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.42;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2820,318,0 chrXIV 213031 . G A 3000 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.44;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3033,348,0 chrXIV 213061 . G A 3864.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.6447;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.00;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3864,420,0 chrXIV 213334 . C T 4168.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.68;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4168,450,0 chrXIV 213556 . T A 4130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=178;Dels=0.00;FS=3.085;HaplotypeScore=13.1746;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=1.634;QD=23.20;ReadPosRankSum=1.634;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4130,456,0 chrXIV 213823 . A G 3112 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=20.89;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3145,351,0 chrXIV 213829 . T C 3007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;MQRankSum=-0.562;QD=19.91;ReadPosRankSum=1.709;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3040,339,0 chrXIV 213856 . C T 2108 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=17.28;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2141,240,0 chrXIV 213861 . T A 1983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=3.237;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=-0.969;QD=16.81;ReadPosRankSum=1.703;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2016,228,0 chrXIV 214019 . C A 3120 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=18.6962;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.13;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3153,357,0 chrXIV 214071 . G A 2480 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=20.67;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2513,270,0 chrXIV 214122 . G T 2147 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=17.04;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2180,237,0 chrXIV 214140 . C A 2154 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=19.4321;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=16.32;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2187,240,0 chrXIV 214270 . A G 3168 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.1785;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=24.56;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3201,360,0 chrXIV 214366 . A G 3271.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.25;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3271,372,0 chrXIV 214411 . T C 3377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.360;QD=22.36;ReadPosRankSum=1.709;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3377,390,0 chrXIV 214918 . T C 3003 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.46;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3036,342,0 chrXIV 215120 . T C 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.9065;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.077;QD=21.56;ReadPosRankSum=1.709;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3246,381,0 chrXIV 215285 . C T 4942.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=19.9582;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4942,549,0 chrXIV 215804 . T C 2759 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.74;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2792,327,0 chrXIV 215887 . T A 2300 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2333,264,0 chrXIV 215969 . A G 2101 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.35;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2134,240,0 chrXIV 216026 . T A 3164 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.72;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3197,336,0 chrXIV 216068 . A G 2041 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.0695;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.68;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2074,243,0 chrXIV 216241 . G A 4085.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=20.6842;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.08;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4085,447,0 chrXIV 217298 . G C 2179 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2212,249,0 chrXIV 217536 . T C 3991.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.81;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3991,447,0 chrXIV 217787 . C T 4499.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.93;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4499,489,0 chrXIV 217872 . A G 5145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=224;Dels=0.00;FS=7.029;HaplotypeScore=18.1356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.080;QD=22.97;ReadPosRankSum=2.384;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:5145,576,0 chrXIV 218071 . A G 4611.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.4319;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.75;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4611,510,0 chrXIV 218185 . T C 4979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=13.9924;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.165;QD=21.93;ReadPosRankSum=1.717;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4979,558,0 chrXIV 218774 . T G 2524 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.57;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2557,297,0 chrXIV 218831 . G T 2728 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.80;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2761,294,0 chrXIV 218898 . C T 2552 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=22.19;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2585,276,0 chrXIV 218903 . A G 2282 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=19.34;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2315,258,0 chrXIV 220228 . A T 1912 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9589;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.51;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1945,219,0 chrXIV 220272 . G A 1680 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=12.9273;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.53;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1713,186,0 chrXIV 220546 . G A 1335 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=40.42;MQ0=0;QD=11.81;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1368,147,0 chrXIV 220548 . T G 1262 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=40.20;MQ0=0;QD=11.27;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:1295,144,0 chrXIV 220550 . T G 1220 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=39.28;MQ0=0;QD=11.30;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1253,141,0 chrXIV 220551 . T A 1306 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;MQRankSum=-1.228;QD=11.87;ReadPosRankSum=1.638;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:1339,147,0 chrXIV 220629 . T A 2399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=4.621;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-1.537;QD=16.78;ReadPosRankSum=1.708;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2432,276,0 chrXIV 220632 . G A 2375 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=16.84;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2408,273,0 chrXIV 220663 . A T 2568 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=17.23;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2601,282,0 chrXIV 220693 . A G 2723 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=17.57;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,151:155:99:2756,321,0 chrXIV 220950 . C T 5054.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.1581;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.97;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5054,576,0 chrXIV 221010 . C T 4100.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.03;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4100,447,0 chrXIV 221481 . T C 2714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.9047;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.284;QD=22.07;ReadPosRankSum=1.704;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2747,321,0 chrXIV 221642 . C A 3186 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.60;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3219,354,0 chrXIV 221673 . T A 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=137;Dels=0.00;FS=7.510;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.565;QD=21.32;ReadPosRankSum=2.306;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2954,336,0 chrXIV 221709 . T C 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.364;HaplotypeScore=7.1349;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.434;QD=22.92;ReadPosRankSum=1.678;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2967,336,0 chrXIV 222506 . A G 1347 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.10;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1380,153,0 chrXIV 222725 . T C 2556 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.2861;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2589,297,0 chrXIV 222772 . C T 2694 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2727,297,0 chrXIV 223812 . T C 2650 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2683,309,0 chrXIV 224148 . C T 2732 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.86;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2765,309,0 chrXIV 224570 . A G 2343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=110;Dels=0.00;FS=3.050;HaplotypeScore=82.8174;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=-0.369;QD=21.30;ReadPosRankSum=2.315;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2376,267,0 chrXIV 224573 . G A 2394 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=85.1907;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=22.80;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2427,264,0 chrXIV 224628 . A G 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=98;Dels=0.01;FS=2.771;HaplotypeScore=17.8882;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;MQRankSum=-2.044;QD=18.90;ReadPosRankSum=2.399;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1885,210,0 chrXIV 224654 . G A 1762 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=18.74;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1795,198,0 chrXIV 224659 . G T 1663 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.27;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1696,189,0 chrXIV 224708 . A G 1887 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.86;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1920,222,0 chrXIV 224721 . G T 1925 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.48;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1958,216,0 chrXIV 225318 . T A 3333.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.5273;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.98;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3333,363,0 chrXIV 225567 . G A 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=0.674;QD=18.27;ReadPosRankSum=0.601;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2700,306,0 chrXIV 225568 . T A 2823 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.47;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2856,315,0 chrXIV 225611 . C T 2850 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=17.17;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:2883,327,0 chrXIV 225622 . G C 2988 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=16.69;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3021,339,0 chrXIV 226012 . A G 4208.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4208,465,0 chrXIV 226114 . C T 4757.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.0381;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.39;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4757,516,0 chrXIV 226164 . T C 4728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.582;QD=22.73;ReadPosRankSum=1.682;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4728,540,0 chrXIV 226574 . C T 4223.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=6.5827;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=18.20;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:0,228:232:99:4223,474,0 chrXIV 226580 . T C 4296.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.84;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4296,489,0 chrXIV 226950 . A T 4142.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.5130;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.63;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4142,450,0 chrXIV 227151 . T C 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=159;Dels=0.00;FS=6.628;HaplotypeScore=16.6540;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=2.308;QD=21.82;ReadPosRankSum=2.418;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:2,155:159:99:3470,390,0 chrXIV 227377 . G A 3759.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.25;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3759,414,0 chrXIV 227444 . C T 2916 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.68;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2949,324,0 chrXIV 227455 . C T 2858 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.41;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2891,318,0 chrXIV 227510 . C A 3173 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.3295;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.21;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3206,354,0 chrXIV 227572 . A G 2349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=120;Dels=0.00;FS=2.936;HaplotypeScore=30.6894;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.672;QD=19.57;ReadPosRankSum=2.326;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2382,267,0 chrXIV 227933 . T C 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.684;QD=22.03;ReadPosRankSum=1.708;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3250,378,0 chrXIV 228753 . A G 5032.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=224;Dels=0.00;FS=5.588;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.054;QD=22.46;ReadPosRankSum=2.941;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:3,219:224:99:5032,576,0 chrXIV 229048 . A G 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=4.685;HaplotypeScore=8.6754;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.293;QD=24.21;ReadPosRankSum=1.686;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3656,420,0 chrXIV 229790 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.3828;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=20.95;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3456,387,0 chrXIV 229818 . C T 3763.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.23;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3763,402,0 chrXIV 229890 . C T 2677 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=92.2513;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.48;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2710,306,0 chrXIV 230180 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.18;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2741,309,0 chrXIV 230599 . G A 2409 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.10;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2442,264,0 chrXIV 230681 . T A 61.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=120;Dels=0.00;FS=4.884;HaplotypeScore=92.5885;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=0.192;QD=0.51;ReadPosRankSum=1.466;SB=-9.065e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:12:94,12,0 chrXIV 230725 . T C 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=15.5415;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.062;QD=20.79;ReadPosRankSum=1.670;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2361,264,0 chrXIV 230830 . A T 1876 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.08;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1909,216,0 chrXIV 230962 . G T 2827 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.62;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2860,309,0 chrXIV 230979 . G A 2930 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=20.78;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2963,321,0 chrXIV 231034 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.9810;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.92;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3058,327,0 chrXIV 231302 . C T 5185.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=10.6893;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.46;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5185,567,0 chrXIV 231331 . A G 4809.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.7681;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.68;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4809,531,0 chrXIV 231426 . A G 5172.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.1748;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.78;SB=-2.555e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:5172,567,0 chrXIV 231454 . C A 4418.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.98;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4418,486,0 chrXIV 231474 . C T 4222.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.90;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4222,471,0 chrXIV 231746 . G A 2752 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.1428;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.93;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2785,306,0 chrXIV 232094 . C T 4395.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=16.4924;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.65;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4395,480,0 chrXIV 232190 . T C 4530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=3.872;HaplotypeScore=9.3725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.364;QD=22.43;ReadPosRankSum=1.715;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:1,200:202:99:4530,504,0 chrXIV 232241 . G A 4537.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.75;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4537,501,0 chrXIV 232438 . C T 3711.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.96;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3711,405,0 chrXIV 232508 . A G 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=177;Dels=0.00;FS=2.694;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.677;QD=22.67;ReadPosRankSum=2.422;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:4013,450,0 chrXIV 232598 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.69;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3471,402,0 chrXIV 232703 . C G 3063 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3096,363,0 chrXIV 232778 . C G 3441.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.64;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3441,405,0 chrXIV 232914 . A G 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=3.839;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.031;QD=22.82;ReadPosRankSum=1.670;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3811,432,0 chrXIV 233132 . T C 5129.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=228;Dels=0.00;FS=2.922;HaplotypeScore=16.0434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.727;QD=22.50;ReadPosRankSum=2.428;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:2,226:228:99:5129,579,0 chrXIV 233237 . G C 4386.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.9200;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.40;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4386,504,0 chrXIV 233293 . A T 4537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=208;Dels=0.00;FS=3.361;HaplotypeScore=5.6857;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.740;QD=21.81;ReadPosRankSum=1.631;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4537,501,0 chrXIV 233303 . C T 4768.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=13.4686;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=20.55;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:4768,513,0 chrXIV 233498 . T C 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.270;DP=187;Dels=0.00;FS=16.525;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-0.157;QD=20.29;ReadPosRankSum=3.393;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:4,180:187:99:3795,426,0 chrXIV 233507 . A G 3931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.750;DP=197;Dels=0.00;FS=5.496;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.383;QD=19.95;ReadPosRankSum=2.934;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:3,194:197:99:3931,447,0 chrXIV 233560 . T C 3431.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.5129;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=18.85;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3431,381,0 chrXIV 233585 . C T 3400.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.00;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3400,387,0 chrXIV 233609 . A G 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.835;QD=18.78;ReadPosRankSum=1.711;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3170,360,0 chrXIV 233897 . A G 3751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=3.277;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.557;QD=22.06;ReadPosRankSum=1.711;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:1,167:170:99:3751,435,0 chrXIV 234010 . A G 2841 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.04;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2874,321,0 chrXIV 234325 . G A 3595.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=24.46;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3595,390,0 chrXIV 234916 . T C 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.714;DP=188;Dels=0.00;FS=11.637;HaplotypeScore=9.7156;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.507;QD=22.06;ReadPosRankSum=3.790;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:5,182:188:99:4148,486,0 chrXIV 235726 . T G 1789 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.65;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1822,204,0 chrXIV 235925 . G A 1156 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.41;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1189,129,0 chrXIV 235956 . C T 552 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=37.4607;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=7.89;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:69:585,69,0 chrXIV 236070 . G C 2276 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.99;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2309,261,0 chrXIV 236209 . G A 2097 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=19.60;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2130,243,0 chrXIV 236383 . A G 3651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=156;Dels=0.00;FS=10.675;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.638;QD=23.40;ReadPosRankSum=2.418;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3651,432,0 chrXIV 236605 . T C 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=3.779;HaplotypeScore=12.4263;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.404;QD=20.05;ReadPosRankSum=1.685;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3021,348,0 chrXIV 236740 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.4340;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.86;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3338,372,0 chrXIV 236810 . A G 3166 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.68;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3199,363,0 chrXIV 237099 . T C 4043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.736;DP=179;Dels=0.00;FS=5.712;HaplotypeScore=15.1472;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.230;QD=22.59;ReadPosRankSum=2.938;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:4043,462,0 chrXIV 237838 . T G 5059.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.32;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5059,576,0 chrXIV 238041 . A G 4078.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.1949;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.261;QD=22.66;ReadPosRankSum=1.693;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4078,462,0 chrXIV 238258 . T C 3144 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.82;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3177,366,0 chrXIV 238429 . A G 4182.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4182,471,0 chrXIV 238666 . A G 5156.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.7870;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5156,585,0 chrXIV 239987 . T G 2325 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.93;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2358,264,0 chrXIV 240005 . A C 1866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=96;Dels=0.00;FS=3.052;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-1.465;QD=19.44;ReadPosRankSum=2.398;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:2,93:96:99:1899,222,0 chrXIV 240009 . T C 1846 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=19.43;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1879,213,0 chrXIV 240106 . C T 3846.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.49;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3846,420,0 chrXIV 240441 . G A 3614.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.04;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3614,408,0 chrXIV 240602 . T C 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=145;Dels=0.00;FS=3.133;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-1.155;QD=20.99;ReadPosRankSum=1.684;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3076,351,0 chrXIV 240618 . G C 3133 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=20.75;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3166,366,0 chrXIV 241439 . A G 2502 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2535,279,0 chrXIV 242111 . C T 7739.01 PASS AC=2;AF=1.00;AN=2;DP=333;Dels=0.00;FS=0.000;HaplotypeScore=24.8432;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.24;SB=-4.337e+03 GT:AD:DP:GQ:PL 1/1:0,330:333:99:7739,835,0 chrXIV 242246 . A G 5091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=242;Dels=0.00;FS=6.075;HaplotypeScore=20.4546;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.117;QD=21.04;ReadPosRankSum=2.419;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:2,239:242:99:5091,591,0 chrXIV 242307 . T C 6744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=290;Dels=0.00;FS=3.418;HaplotypeScore=15.4707;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.884;QD=23.26;ReadPosRankSum=1.684;SB=-3.259e+03 GT:AD:DP:GQ:PL 1/1:1,289:290:99:6744,747,0 chrXIV 242579 . G A 5127.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.59;SB=-2.818e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5127,555,0 chrXIV 242589 . T C 4912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=252;Dels=0.00;FS=3.466;HaplotypeScore=9.1537;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.794;QD=19.49;ReadPosRankSum=1.691;SB=-2.874e+03 GT:AD:DP:GQ:PL 1/1:1,250:252:99:4912,552,0 chrXIV 242759 . C T 4947.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.38;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4947,534,0 chrXIV 243291 . G A 4320.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.9789;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.13;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4320,468,0 chrXIV 246515 . T C 2985 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.13;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3018,336,0 chrXIV 247168 . G A 4795.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.0208;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=24.10;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4795,519,0 chrXIV 247214 . T C 3909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.276;DP=201;Dels=0.00;FS=16.029;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=-0.548;QD=19.45;ReadPosRankSum=3.381;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:4,195:201:99:3909,435,0 chrXIV 247216 . C A 3940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=203;Dels=0.00;FS=4.056;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=0.457;QD=19.41;ReadPosRankSum=1.542;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:3940,438,0 chrXIV 247691 . T C 4047.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.1159;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.74;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4047,453,0 chrXIV 247726 . A G 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.176;QD=21.95;ReadPosRankSum=1.695;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4104,471,0 chrXIV 248423 . G A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.0504;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.97;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3494,378,0 chrXIV 248451 . A C 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=3.314;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.421;QD=21.55;ReadPosRankSum=1.709;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3223,366,0 chrXIV 249065 . C A 2686 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2719,294,0 chrXIV 249509 . G A 2998 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.79;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3031,333,0 chrXIV 249542 . A G 2597 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.98;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2630,294,0 chrXIV 249569 . T A 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=108;Dels=0.00;FS=3.013;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.812;QD=22.08;ReadPosRankSum=2.313;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2418,264,0 chrXIV 249902 . A G 2371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=119;Dels=0.00;FS=6.086;HaplotypeScore=10.9794;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.250;QD=19.92;ReadPosRankSum=2.906;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:3,114:119:99:2404,276,0 chrXIV 249918 . G A 2190 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.12;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2223,243,0 chrXIV 250008 . G A 1988 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.71;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2021,219,0 chrXIV 250019 . C T 2011 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.73;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2044,222,0 chrXIV 250357 . G A 2243 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.89;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2276,246,0 chrXIV 250419 . T C 1999 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.97;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2032,225,0 chrXIV 250456 . C G 2729 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.32;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2762,324,0 chrXIV 250494 . T C 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.160;QD=20.71;ReadPosRankSum=1.705;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2725,300,0 chrXIV 250504 . G T 2651 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.87;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2684,291,0 chrXIV 250567 . G A 2345 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.5235;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=21.13;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2378,261,0 chrXIV 250619 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.36;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3070,342,0 chrXIV 250834 . T C 2855 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.83;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2888,324,0 chrXIV 250840 . T C 2599 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=18.83;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2632,297,0 chrXIV 250896 . C T 2159 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=18.77;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2192,237,0 chrXIV 251384 . A G 2481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.616;DP=113;Dels=0.00;FS=10.251;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.705;QD=21.96;ReadPosRankSum=2.902;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2514,279,0 chrXIV 251952 . A T 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.283;DP=126;Dels=0.00;FS=2.799;HaplotypeScore=13.3707;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=-0.869;QD=22.46;ReadPosRankSum=0.732;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2863,309,0 chrXIV 252203 . C G 5265.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.50;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5265,588,0 chrXIV 252439 . C G 5708.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.4416;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=1;QD=22.21;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:1,253:257:99:5708,660,0 chrXIV 253087 . T C 2272 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=9;MQRankSum=-2.423;QD=22.50;ReadPosRankSum=2.396;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2305,261,0 chrXIV 254474 . C T 5736.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.41;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5736,630,0 chrXIV 254495 . T C 5640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.196;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=17.0946;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.489;QD=20.43;ReadPosRankSum=3.272;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:4,272:276:99:5640,636,0 chrXIV 254579 . C T 8696.01 PASS AC=2;AF=1.00;AN=2;DP=350;Dels=0.00;FS=0.000;HaplotypeScore=17.9794;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.85;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:0,350:350:99:8696,969,0 chrXIV 254632 . T C 8641.01 filter AC=2;AF=1.00;AN=2;DP=375;Dels=0.00;FS=0.000;HaplotypeScore=22.9173;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.04;SB=-3.926e+03 GT:AD:DP:GQ:PL 1/1:0,372:375:99:8641,999,0 chrXIV 255192 . C T 2510 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2543,282,0 chrXIV 255895 . T C 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.8114;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.313;QD=22.85;ReadPosRankSum=1.710;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3588,408,0 chrXIV 256214 . C T 3522.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.17;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3522,378,0 chrXIV 256252 . C T 3190 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.71;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3223,354,0 chrXIV 256273 . G A 3182 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.4466;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.36;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3215,354,0 chrXIV 256778 . C T 2234 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.28;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2267,249,0 chrXIV 256787 . G C 2196 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.61;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2229,255,0 chrXIV 256857 . A G 3143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=144;Dels=0.00;FS=8.841;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-0.851;QD=21.83;ReadPosRankSum=2.398;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3176,363,0 chrXIV 256917 . A G 3048 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.19;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3081,360,0 chrXIV 256929 . A G 3009 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=18.69;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3042,354,0 chrXIV 257114 . C T 4809.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=18.8077;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.47;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4809,537,0 chrXIV 257192 . C A 6266.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=13.3918;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.46;SB=-3.122e+03 GT:AD:DP:GQ:PL 1/1:0,291:292:99:6266,679,0 chrXIV 257376 . G C 3505.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=18.64;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,183:188:99:3505,411,0 chrXIV 257391 . G A 3186 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.79;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3219,360,0 chrXIV 257643 . A C 2914 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.08;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2947,333,0 chrXIV 257904 . T C 2911 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.36;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2944,339,0 chrXIV 257986 . A T 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=140;Dels=0.00;FS=3.027;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.026;QD=22.17;ReadPosRankSum=2.415;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3137,339,0 chrXIV 258010 . C T 2369 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=18.95;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2402,264,0 chrXIV 258013 . C T 2315 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=18.09;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2348,255,0 chrXIV 258099 . G A 3791.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3791,420,0 chrXIV 258241 . A T 2985 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.96;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3018,327,0 chrXIV 258320 . A T 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.926;DP=113;Dels=0.00;FS=2.633;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.991;QD=16.71;ReadPosRankSum=2.404;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:1921,216,0 chrXIV 258399 . G A 2757 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=24.40;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2790,318,0 chrXIV 258474 . G A 2057 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2090,231,0 chrXIV 258589 . T A 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=3.252;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=-1.545;QD=19.78;ReadPosRankSum=1.709;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2961,327,0 chrXIV 258590 . G C 2841 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=19.20;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2874,324,0 chrXIV 258678 . C G 3441.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.2991;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=20.98;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3441,399,0 chrXIV 258735 . A G 3203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.450;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.2247;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.565;QD=21.35;ReadPosRankSum=-0.795;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3236,339,0 chrXIV 258795 . A G 3790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.074;DP=176;Dels=0.00;FS=6.507;HaplotypeScore=17.1596;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.962;QD=21.53;ReadPosRankSum=1.383;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3790,411,0 chrXIV 258883 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=18.69;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3420,378,0 chrXIV 258894 . A G 3062 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=18.12;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3095,363,0 chrXIV 259283 . A G 3649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=3.716;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-1.386;QD=22.81;ReadPosRankSum=1.689;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3649,426,0 chrXIV 259404 . T C 3672.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.24;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3672,420,0 chrXIV 259493 . A T 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.091;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=0.053;QD=19.23;ReadPosRankSum=1.711;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3167,351,0 chrXIV 259503 . T G 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=0.154;QD=16.25;ReadPosRankSum=1.617;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:2975,342,0 chrXIV 259519 . A G 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=189;Dels=0.00;FS=7.947;HaplotypeScore=10.7178;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=0.407;QD=15.25;ReadPosRankSum=2.410;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:2,183:189:99:2915,336,0 chrXIV 259572 . G A 4515.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.62;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4515,486,0 chrXIV 259615 . C G 4235.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.5988;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.02;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4235,477,0 chrXIV 259694 . A G 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.236;QD=21.29;ReadPosRankSum=1.712;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3768,438,0 chrXIV 259898 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=155;Dels=0.00;FS=7.322;HaplotypeScore=11.2628;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-0.626;QD=21.34;ReadPosRankSum=2.402;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3308,375,0 chrXIV 260057 . C T 3436.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.37;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3436,381,0 chrXIV 260099 . A C 2814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=1.010;QD=23.45;ReadPosRankSum=1.674;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2847,318,0 chrXIV 260108 . C T 2573 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.97;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2606,285,0 chrXIV 260145 . T C 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=112;Dels=0.00;FS=4.655;HaplotypeScore=13.8000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.265;QD=19.31;ReadPosRankSum=1.701;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2196,246,0 chrXIV 260586 . G A 2820 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.56;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2853,315,0 chrXIV 260605 . C T 2040 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=18.38;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2073,225,0 chrXIV 260618 . A G 2206 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4452;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.70;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2239,246,0 chrXIV 260713 . T A 3313.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3313,357,0 chrXIV 262301 . G A 2924 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.3900;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2957,324,0 chrXIV 262513 . T G 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=113;Dels=0.00;FS=3.032;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.432;QD=21.31;ReadPosRankSum=2.405;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:2,109:113:99:2441,276,0 chrXIV 263036 . A G 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=3.093;HaplotypeScore=8.9899;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.577;QD=21.51;ReadPosRankSum=1.710;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3441,393,0 chrXIV 264232 . A G 2911 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=19.5234;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.90;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,150:154:99:2944,339,0 chrXIV 264346 . C T 4053.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4053,432,0 chrXIV 265661 . G A 3987.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.2106;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.40;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3987,453,0 chrXIV 267267 . C T 2417 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2450,279,0 chrXIV 268398 . T G 5809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=14.2469;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.382;QD=22.87;ReadPosRankSum=1.718;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:1,253:254:99:5809,654,0 chrXIV 268760 . C A 4783.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.45;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4783,540,0 chrXIV 269266 . C G 5609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.421;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=9.4367;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.178;QD=23.87;ReadPosRankSum=-1.554;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,233:235:99:5609,600,0 chrXIV 269320 . T G 6484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-1.448;QD=23.16;ReadPosRankSum=1.695;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:1,279:280:99:6484,755,0 chrXIV 270079 . C A 2523 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=22.73;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2556,279,0 chrXIV 270107 . T G 2038 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=20.80;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2071,237,0 chrXIV 270129 . A T 2150 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.11;MQ0=0;QD=20.67;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2183,243,0 chrXIV 270133 . C T 2063 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;QD=20.03;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2096,237,0 chrXIV 270160 . T C 1926 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;QD=16.75;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1959,234,0 chrXIV 270237 . T A 584 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;MQRankSum=0.890;QD=7.89;ReadPosRankSum=1.685;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:78:617,78,0 chrXIV 270238 . A T 605 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=8.18;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:81:638,81,0 chrXIV 270239 . C T 638 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=8.62;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:81:671,81,0 chrXIV 270241 . A T 724 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;QD=9.53;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:84:757,84,0 chrXIV 270320 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=23.53;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3341,369,0 chrXIV 270347 . A G 2920 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=21.16;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2953,348,0 chrXIV 270360 . T C 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.6209;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=-0.697;QD=19.92;ReadPosRankSum=1.710;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3100,360,0 chrXIV 270523 . T G 5606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=255;Dels=0.00;FS=2.822;HaplotypeScore=17.5389;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-2.078;QD=21.98;ReadPosRankSum=2.401;SB=-2.438e+03 GT:AD:DP:GQ:PL 1/1:2,250:255:99:5606,627,0 chrXIV 270998 . A C 1778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=99;Dels=0.00;FS=3.054;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=1.102;QD=17.96;ReadPosRankSum=1.697;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1811,204,0 chrXIV 271001 . T C 1830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-0.555;QD=17.77;ReadPosRankSum=1.698;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1863,213,0 chrXIV 271098 . T G 2386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=1.195;QD=18.50;ReadPosRankSum=1.652;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2419,282,0 chrXIV 271256 . G C 3471.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.99;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3471,393,0 chrXIV 271371 . C G 3291.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.09;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3291,369,0 chrXIV 271404 . A G 4351.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.14;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,184:188:99:4351,483,0 chrXIV 271443 . T A 4901.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.68;SB=-2.723e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4901,528,0 chrXIV 271494 . A G 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=154;Dels=0.00;FS=4.081;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.080;QD=22.92;ReadPosRankSum=1.663;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,150:154:99:3530,405,0 chrXIV 271772 . C T 4482.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.30;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4482,492,0 chrXIV 272027 . C T 5440.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.45;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:0,265:266:99:5440,583,0 chrXIV 272042 . A G 5242.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=4.0898;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.92;SB=-2.773e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:5242,606,0 chrXIV 272165 . C T 4853.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=20.6610;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.19;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4853,537,0 chrXIV 272328 . A G 5800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=15.1003;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.387;QD=23.11;ReadPosRankSum=1.635;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5800,642,0 chrXIV 272416 . A G 4415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=195;Dels=0.00;FS=2.529;HaplotypeScore=10.5158;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.675;QD=22.64;ReadPosRankSum=2.954;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:3,192:195:99:4415,474,0 chrXIV 272546 . T A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.72;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3259,354,0 chrXIV 272669 . C T 3002 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.5522;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.92;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3035,333,0 chrXIV 272693 . A G 209 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=131.8568;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=1.44;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:30:242,30,0 chrXIV 272747 . C T 3306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=5.679;HaplotypeScore=13.0317;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.882;QD=20.79;ReadPosRankSum=1.667;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3306,363,0 chrXIV 272818 . A G 3507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=166;Dels=0.00;FS=3.450;HaplotypeScore=5.1281;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-0.710;QD=21.13;ReadPosRankSum=1.690;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3507,399,0 chrXIV 272830 . A G 3657.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.90;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3657,408,0 chrXIV 272905 . A G 4553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.2492;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.173;QD=22.77;ReadPosRankSum=1.195;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4553,507,0 chrXIV 272956 . G A 5219.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=17.2190;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.62;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:5219,564,0 chrXIV 273091 . C T 4782.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.3874;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.30;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4782,525,0 chrXIV 273300 . C T 3746.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3746,429,0 chrXIV 273490 . A G 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=133;Dels=0.00;FS=6.059;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.841;QD=21.74;ReadPosRankSum=2.887;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2924,327,0 chrXIV 273914 . T C 3396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.5677;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.721;QD=21.09;ReadPosRankSum=1.689;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3396,396,0 chrXIV 274080 . T C 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.817;DP=162;Dels=0.00;FS=11.178;HaplotypeScore=9.2926;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.411;QD=16.06;ReadPosRankSum=2.918;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:3,156:162:99:2635,309,0 chrXIV 274103 . A G 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=152;Dels=0.00;FS=2.936;HaplotypeScore=6.6575;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=1.212;QD=18.14;ReadPosRankSum=2.417;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:2,147:152:99:2791,315,0 chrXIV 274808 . T C 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=146;Dels=0.00;FS=6.089;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.414;QD=21.50;ReadPosRankSum=2.924;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3172,357,0 chrXIV 274838 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.66;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3553,387,0 chrXIV 274853 . C T 3467.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.1500;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=19.37;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3467,378,0 chrXIV 274886 . C A 2870 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=17.4865;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=16.21;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:2903,315,0 chrXIV 275212 . T A 3344.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3344,363,0 chrXIV 275298 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3279,363,0 chrXIV 275457 . G A 3344.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.59;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3344,372,0 chrXIV 275748 . T G 2675 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2708,306,0 chrXIV 275816 . C A 4415.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4415,483,0 chrXIV 275934 . T C 4014.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.6516;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.89;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4014,450,0 chrXIV 276118 . A C 3967.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.54;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3967,450,0 chrXIV 276149 . A G 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=166;Dels=0.00;FS=5.237;HaplotypeScore=14.4997;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.652;QD=20.16;ReadPosRankSum=3.300;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:4,161:166:99:3346,387,0 chrXIV 276550 . A G 3569.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2698;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.31;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3569,396,0 chrXIV 276588 . C T 3678.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.3566;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=22.99;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3678,408,0 chrXIV 276799 . C T 4771.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=21.89;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4771,543,0 chrXIV 276824 . C T 4202.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=18.51;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4202,456,0 chrXIV 276831 . A G 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=220;Dels=0.00;FS=7.009;HaplotypeScore=5.4639;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=-0.443;QD=16.25;ReadPosRankSum=2.360;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:2,217:220:99:3576,405,0 chrXIV 276852 . G C 3200 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=14.68;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:3233,369,0 chrXIV 276870 . G A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.6821;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=15.27;SB=-2.848e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:3389,372,0 chrXIV 277361 . G A 5214.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.6800;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.14;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5214,562,0 chrXIV 277528 . T A 4445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=3.570;HaplotypeScore=14.2300;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.713;QD=24.29;ReadPosRankSum=1.694;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:4445,492,0 chrXIV 277707 . A T 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=192;Dels=0.00;FS=3.889;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.043;QD=23.82;ReadPosRankSum=1.660;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4574,507,0 chrXIV 277752 . A G 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=3.010;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=1.035;QD=22.64;ReadPosRankSum=1.665;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3509,396,0 chrXIV 277797 . T C 2932 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.22;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:2965,330,0 chrXIV 277803 . G A 2692 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.6543;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.37;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2725,303,0 chrXIV 277938 . A G 3554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=157;Dels=0.00;FS=2.965;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.758;QD=22.64;ReadPosRankSum=2.402;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:2,152:157:99:3554,399,0 chrXIV 278286 . C T 3542.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.28;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3542,402,0 chrXIV 278850 . T C 3392.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.540;QD=23.23;ReadPosRankSum=1.684;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3392,387,0 chrXIV 279061 . T C 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.755;DP=160;Dels=0.00;FS=6.029;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-0.843;QD=21.61;ReadPosRankSum=2.931;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3457,390,0 chrXIV 279072 . A G 3405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=3.095;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=1.129;QD=21.69;ReadPosRankSum=1.665;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3405,378,0 chrXIV 279171 . C A 4579.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=23.60;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4579,498,0 chrXIV 279177 . A G 4373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=193;Dels=0.00;FS=2.907;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=-0.159;QD=22.66;ReadPosRankSum=2.360;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4373,483,0 chrXIV 279204 . C T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.7251;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.48;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3458,375,0 chrXIV 279267 . T C 2994 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.54;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3027,336,0 chrXIV 279444 . G A 2861 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.35;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2894,315,0 chrXIV 279537 . A G 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.452;QD=21.34;ReadPosRankSum=1.707;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2999,342,0 chrXIV 279746 . C T 3207 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.11;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3240,366,0 chrXIV 279996 . G A 1797 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.14;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1830,198,0 chrXIV 280016 . C A 1426 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=19.27;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1459,162,0 chrXIV 280112 . C T 1585 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.02;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1618,174,0 chrXIV 280158 . T C 1810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=75;Dels=0.00;FS=3.057;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.283;QD=24.13;ReadPosRankSum=2.383;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:2,72:75:99:1843,204,0 chrXIV 280191 . T C 1886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.352;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.972;QD=23.00;ReadPosRankSum=-0.253;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1919,197,0 chrXIV 280722 . C T 5654.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=13.4974;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.27;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5654,621,0 chrXIV 281055 . G A 5789.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=16.5971;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.53;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:0,243:246:99:5789,630,0 chrXIV 281100 . C T 5339.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=19.1043;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.19;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5339,594,0 chrXIV 281196 . G A 4492.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4492,489,0 chrXIV 281259 . G A 5353.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=20.1860;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.97;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:0,230:233:99:5353,582,0 chrXIV 281634 . C T 3399.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.93;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3399,378,0 chrXIV 281655 . A G 2995 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.94;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3028,339,0 chrXIV 281700 . T C 3119 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.22;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3152,354,0 chrXIV 282032 . C T 2883 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.7850;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.36;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2916,321,0 chrXIV 282640 . C T 6501.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=14.7726;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=20.70;SB=-3.754e+03 GT:AD:DP:GQ:PL 1/1:0,312:314:99:6501,717,0 chrXIV 282778 . T C 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=218;Dels=0.00;FS=7.332;HaplotypeScore=9.0467;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=3;MQRankSum=-1.204;QD=15.91;ReadPosRankSum=2.391;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:5,211:218:99:3469,393,0 chrXIV 282787 . C T 3309.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.9668;MLEAC=2;MLEAF=1.00;MQ=38.76;MQ0=3;QD=15.99;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:3,203:207:99:3309,360,0 chrXIV 282805 . C T 2727 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.1787;MLEAC=2;MLEAF=1.00;MQ=38.18;MQ0=3;QD=13.70;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:2760,303,0 chrXIV 282814 . T C 2496 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=192;Dels=0.00;FS=4.504;HaplotypeScore=4.0101;MLEAC=2;MLEAF=1.00;MQ=38.51;MQ0=3;MQRankSum=-1.384;QD=13.00;ReadPosRankSum=1.714;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:4,188:192:99:2529,288,0 chrXIV 282820 . C T 2565 SnpCluster AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=39.21;MQ0=3;QD=13.57;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:2598,279,0 chrXIV 282824 . A G 2422 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=195;Dels=0.00;FS=2.745;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=3;MQRankSum=-0.352;QD=12.42;ReadPosRankSum=1.030;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:5,190:195:99:2455,279,0 chrXIV 282964 . T C 3546.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.7696;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.86;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3546,417,0 chrXIV 283105 . A G 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.173;DP=153;Dels=0.00;FS=13.046;HaplotypeScore=10.1233;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=1.938;QD=21.85;ReadPosRankSum=3.379;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:4,149:153:99:3343,372,0 chrXIV 283562 . A G 1401 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.23;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1434,159,0 chrXIV 283704 . T C 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.000;QD=21.96;ReadPosRankSum=1.671;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2537,291,0 chrXIV 283828 . T C 3016 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=19.97;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3049,345,0 chrXIV 283830 . A G 3026 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=149;Dels=0.00;FS=13.049;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=-0.857;QD=20.31;ReadPosRankSum=2.912;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:3059,342,0 chrXIV 283835 . A G 2910 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.090;DP=152;Dels=0.00;FS=8.765;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=-2.253;QD=19.14;ReadPosRankSum=2.384;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:2943,310,0 chrXIV 284003 . G T 4174.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.2289;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.19;SB=-2.027e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4174,465,0 chrXIV 284589 . G A 4849.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.65;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4849,528,0 chrXIV 284616 . C T 4719.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.8542;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.91;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4719,528,0 chrXIV 284733 . T C 3863.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=16.5960;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.55;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3863,444,0 chrXIV 284847 . C T 4553.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=13.5290;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.68;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4553,501,0 chrXIV 284916 . A T 3080 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.9616;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.67;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3113,354,0 chrXIV 285069 . C T 3883.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.6219;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.45;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3883,435,0 chrXIV 285483 . C T 2711 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2744,309,0 chrXIV 285543 . G C 2931 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2964,327,0 chrXIV 285930 . A G 2287 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.99;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2320,264,0 chrXIV 285945 . C G 2099 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.2925;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.78;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2132,243,0 chrXIV 286044 . C T 2111 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=22.22;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2144,234,0 chrXIV 286055 . G A 2049 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.34;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2082,225,0 chrXIV 286433 . T C 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=13.2869;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.163;QD=21.99;ReadPosRankSum=1.655;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:3024,348,0 chrXIV 286668 . G A 2841 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9947;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.73;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2874,321,0 chrXIV 286831 . A T 2955 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.8804;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.27;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2988,330,0 chrXIV 286862 . C T 2483 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.99;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2516,282,0 chrXIV 287016 . C G 2852 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.46;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2885,327,0 chrXIV 287246 . G A 3371.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4072;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.20;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3371,378,0 chrXIV 287304 . T C 4611.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=16.6195;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.14;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4611,513,0 chrXIV 287408 . C A 2903 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.68;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2936,324,0 chrXIV 287435 . G A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.31;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3347,378,0 chrXIV 287504 . C T 3592.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.3421;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.64;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3592,402,0 chrXIV 287606 . T C 3712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.443;QD=23.64;ReadPosRankSum=1.665;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3712,411,0 chrXIV 287672 . T G 4065.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.64;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:4065,459,0 chrXIV 287823 . A G 5465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=240;Dels=0.00;FS=7.470;HaplotypeScore=18.1831;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.975;QD=22.77;ReadPosRankSum=2.388;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:2,236:240:99:5465,618,0 chrXIV 288102 . A G 4775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.538;QD=23.52;ReadPosRankSum=1.715;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4775,531,0 chrXIV 288146 . A T 3966.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.47;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3966,447,0 chrXIV 288198 . A T 5091.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.7263;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.90;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5091,558,0 chrXIV 288447 . A G 7921.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.687;DP=362;Dels=0.00;FS=15.984;HaplotypeScore=19.4513;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.631;QD=21.88;ReadPosRankSum=3.700;SB=-4.232e+03 GT:AD:DP:GQ:PL 1/1:5,357:362:99:7921,891,0 chrXIV 289129 . A G 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.043;QD=20.03;ReadPosRankSum=2.415;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2877,327,0 chrXIV 289193 . A G 2328 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.24;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2361,267,0 chrXIV 289681 . G T 4048.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4048,438,0 chrXIV 289819 . G A 4196.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.4962;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=23.18;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4196,477,0 chrXIV 289973 . G T 4293.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.6688;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=20.84;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4293,462,0 chrXIV 290022 . C T 1936 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=16.69;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1969,222,0 chrXIV 290031 . C T 1620 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=41.51;MQ0=0;QD=16.70;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1653,186,0 chrXIV 290050 . G A 389.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.095;DP=129;Dels=0.00;FS=8.330;HaplotypeScore=19.6266;MLEAC=1;MLEAF=0.500;MQ=36.92;MQ0=1;MQRankSum=-3.447;QD=3.02;ReadPosRankSum=-1.498;SB=-2.790e+02 GT:AD:DP:GQ:PL 0/1:78,50:129:99:419,0,345 chrXIV 290053 . A T 170.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;DP=110;Dels=0.00;FS=12.101;HaplotypeScore=9.2843;MLEAC=1;MLEAF=0.500;MQ=40.36;MQ0=1;MQRankSum=-4.066;QD=1.55;ReadPosRankSum=-5.314;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/1:87,23:110:99:200,0,544 chrXIV 290055 . C G 149.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;DP=113;Dels=0.00;FS=12.234;HaplotypeScore=4.8621;MLEAC=1;MLEAF=0.500;MQ=41.30;MQ0=1;MQRankSum=-4.300;QD=1.32;ReadPosRankSum=-6.454;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:90,23:113:99:179,0,580 chrXIV 290167 . A G 4647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=201;Dels=0.00;FS=3.347;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.112;QD=23.12;ReadPosRankSum=1.680;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4647,540,0 chrXIV 290461 . G A 2482 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.36;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2515,273,0 chrXIV 290715 . C T 3984.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3984,444,0 chrXIV 290771 . A C 3581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.979;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.195;QD=22.24;ReadPosRankSum=1.689;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3581,405,0 chrXIV 290802 . T C 3343.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.205;QD=21.71;ReadPosRankSum=1.641;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3343,375,0 chrXIV 291360 . G A 2916 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.2405;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.76;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2949,321,0 chrXIV 291552 . C T 4155.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.46;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4155,453,0 chrXIV 291654 . T A 2130 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.91;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2163,246,0 chrXIV 292005 . A C 1847 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3404;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.75;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1880,210,0 chrXIV 292036 . A G 2212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.751;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.087;QD=21.69;ReadPosRankSum=1.698;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2245,252,0 chrXIV 292265 . T C 3759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.6633;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.011;QD=23.06;ReadPosRankSum=1.668;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3759,429,0 chrXIV 292355 . G C 3551.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3551,411,0 chrXIV 292505 . C T 4474.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.83;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4474,495,0 chrXIV 292695 . G A 3828.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.54;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3828,411,0 chrXIV 292862 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.5538;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=21.43;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2583,291,0 chrXIV 292881 . C T 2175 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=18.43;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2208,249,0 chrXIV 292884 . T G 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=117;Dels=0.00;FS=7.793;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=-1.251;QD=18.18;ReadPosRankSum=2.366;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2160,243,0 chrXIV 293042 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.27;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2290,246,0 chrXIV 293329 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=22.24;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3648,396,0 chrXIV 293332 . C T 3659.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.18;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3659,405,0 chrXIV 293347 . A G 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=173;Dels=0.00;FS=2.914;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-0.916;QD=20.91;ReadPosRankSum=2.421;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3617,408,0 chrXIV 294206 . T A 4406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.093;DP=199;Dels=0.00;FS=2.680;HaplotypeScore=8.0888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.044;QD=22.14;ReadPosRankSum=2.400;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4406,487,0 chrXIV 294334 . G A 5607.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=14.1121;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-2.925e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5607,627,0 chrXIV 294681 . A G 3844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.9968;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.458;QD=21.60;ReadPosRankSum=1.712;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:1,174:178:99:3844,423,0 chrXIV 294859 . G A 3297.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.87;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3297,360,0 chrXIV 294928 . C T 3675.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.04;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3675,402,0 chrXIV 294973 . T C 4336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.137;DP=217;Dels=0.00;FS=8.929;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.602;QD=19.98;ReadPosRankSum=3.412;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:4,212:217:99:4336,469,0 chrXIV 295050 . T C 4280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=189;Dels=0.00;FS=6.006;HaplotypeScore=6.4654;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-1.081;QD=22.65;ReadPosRankSum=2.963;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:3,184:189:99:4280,483,0 chrXIV 295066 . G A 4043.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.17;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4043,462,0 chrXIV 295405 . T C 3934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=198;Dels=0.00;FS=4.333;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.945;QD=19.87;ReadPosRankSum=1.715;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:3934,444,0 chrXIV 295803 . A C 3514.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.38;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3514,396,0 chrXIV 296137 . T C 6276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=289;Dels=0.00;FS=3.259;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.217;QD=21.72;ReadPosRankSum=1.696;SB=-3.438e+03 GT:AD:DP:GQ:PL 1/1:1,287:289:99:6276,723,0 chrXIV 296142 . T C 6384.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.64;SB=-3.416e+03 GT:AD:DP:GQ:PL 1/1:0,293:295:99:6384,738,0 chrXIV 296392 . A C 3081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=165;Dels=0.03;FS=0.000;HaplotypeScore=12.0248;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.209;QD=18.67;ReadPosRankSum=1.645;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3114,357,0 chrXIV 296416 . T C 3322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=165;Dels=0.00;FS=2.989;HaplotypeScore=10.3847;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.389;QD=20.13;ReadPosRankSum=2.389;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:2,159:165:99:3322,366,0 chrXIV 296479 . T C 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.298;QD=21.99;ReadPosRankSum=1.688;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3453,390,0 chrXIV 296824 . A G 4527.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.2869;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.86;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4527,522,0 chrXIV 297016 . A G 3746.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.70;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3746,420,0 chrXIV 297187 . G A 3576.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3576,405,0 chrXIV 297253 . T C 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=133;Dels=0.00;FS=5.855;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.265;QD=23.33;ReadPosRankSum=2.947;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:3136,354,0 chrXIV 297316 . G C 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.611;DP=136;Dels=0.00;FS=3.554;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.764;QD=21.61;ReadPosRankSum=-0.102;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2972,313,0 chrXIV 297334 . G A 2816 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.0942;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=19.42;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,141:145:99:2849,327,0 chrXIV 297366 . C T 3057 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4249;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.47;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3090,345,0 chrXIV 297762 . G A 2792 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.84;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2825,312,0 chrXIV 298059 . G A 4080.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.3343;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=21.47;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4080,459,0 chrXIV 298065 . G A 3731.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=20.06;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:3731,432,0 chrXIV 298073 . C T 3641.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=47.71;MQ0=0;QD=19.90;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3641,414,0 chrXIV 298110 . C A 2983 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.76;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3016,342,0 chrXIV 298403 . C T 3662.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.74;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3662,411,0 chrXIV 298431 . A G 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=7.853;HaplotypeScore=8.9228;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.164;QD=24.03;ReadPosRankSum=1.562;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2989,330,0 chrXIV 298878 . T C 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.324;QD=23.88;ReadPosRankSum=1.665;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3726,414,0 chrXIV 299609 . A G 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=120;Dels=0.00;FS=9.187;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.523;QD=23.51;ReadPosRankSum=2.409;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2854,324,0 chrXIV 299817 . G T 4375.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.5817;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.65;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4375,468,0 chrXIV 300017 . T C 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=3.583;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=1.518;QD=21.39;ReadPosRankSum=1.647;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3465,387,0 chrXIV 300043 . G T 3798.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.01;FS=0.000;HaplotypeScore=9.8480;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.34;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3798,420,0 chrXIV 300185 . G A 2663 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.65;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2696,309,0 chrXIV 300215 . T C 2635 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=21.25;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2668,297,0 chrXIV 300269 . C A 2856 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=21.97;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2889,309,0 chrXIV 300270 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=20.55;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2704,306,0 chrXIV 300432 . G A 2646 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.24;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2679,303,0 chrXIV 300452 . T C 2409 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.0222;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.70;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2442,282,0 chrXIV 300506 . G C 2108 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=11.4201;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.29;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2141,240,0 chrXIV 300720 . T C 2834 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=21.15;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2867,330,0 chrXIV 300738 . G C 2820 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.9812;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=20.74;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2853,327,0 chrXIV 300839 . G A 2199 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=21.56;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2232,249,0 chrXIV 300894 . T C 1673 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.1065;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=16.90;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1706,195,0 chrXIV 300940 . A G 473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.922;DP=122;Dels=0.00;FS=28.455;HaplotypeScore=92.7463;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=-1.135;QD=3.88;ReadPosRankSum=-0.159;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:25,97:122:63:506,63,0 chrXIV 301024 . T C 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=115;Dels=0.00;FS=3.718;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.966;QD=20.72;ReadPosRankSum=1.364;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2416,273,0 chrXIV 301119 . A T 1754 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.70;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1787,195,0 chrXIV 301149 . A G 1443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=-1.469;QD=18.04;ReadPosRankSum=1.688;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1476,165,0 chrXIV 301290 . T C 2089 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.32;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2122,240,0 chrXIV 301386 . C T 1525 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.46;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1558,171,0 chrXIV 301506 . A G 2881 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.42;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2914,333,0 chrXIV 301548 . T A 2008 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.35;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2041,231,0 chrXIV 301618 . A T 1739 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.8745;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.74;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1772,192,0 chrXIV 301709 . T C 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=143;Dels=0.00;FS=6.629;HaplotypeScore=8.4304;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=2.328;QD=20.43;ReadPosRankSum=2.397;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:2954,330,0 chrXIV 301781 . C G 2579 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.99;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2612,297,0 chrXIV 301794 . C T 2615 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=19.66;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2648,288,0 chrXIV 301887 . C G 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=116;Dels=0.00;FS=3.241;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.538;QD=21.07;ReadPosRankSum=0.956;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2477,291,0 chrXIV 301978 . A T 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.969;DP=168;Dels=0.00;FS=17.255;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=0.812;QD=17.70;ReadPosRankSum=3.388;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:5,163:168:99:3007,336,0 chrXIV 301979 . T C 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.689;DP=169;Dels=0.00;FS=21.313;HaplotypeScore=7.9522;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=1.975;QD=17.31;ReadPosRankSum=3.521;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:6,163:169:99:2959,345,0 chrXIV 302118 . A T 3773.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=168;Dels=0.00;FS=3.336;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=-0.438;QD=22.46;ReadPosRankSum=1.690;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3773,429,0 chrXIV 302222 . C T 3476.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=167.4266;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=20.45;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3476,384,0 chrXIV 302243 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=20.74;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3547,384,0 chrXIV 302316 . G A 2093 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;QD=21.36;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2126,234,0 chrXIV 302333 . T A 54.51 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=0;QD=0.69;SB=-3.445e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:12:87,12,0 chrXIV 302384 . T C 2089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=4.393;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.627;QD=21.10;ReadPosRankSum=1.697;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2122,234,0 chrXIV 302463 . G T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.03;FS=0.000;HaplotypeScore=60.4231;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=0.31;SB=-8.398e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:6:55,6,0 chrXIV 302577 . T A 1804 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=22.84;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1837,201,0 chrXIV 302598 . T G 1937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=93;Dels=0.00;FS=3.045;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;MQRankSum=-0.437;QD=20.83;ReadPosRankSum=2.397;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1970,219,0 chrXIV 302623 . T A 2319 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=19.99;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2352,255,0 chrXIV 302635 . C T 2242 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5256;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=17.52;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2275,255,0 chrXIV 302943 . T C 3489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.4170;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.653;QD=20.89;ReadPosRankSum=1.649;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3489,402,0 chrXIV 303090 . T C 3905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=180;Dels=0.00;FS=6.442;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.563;QD=21.69;ReadPosRankSum=0.252;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3905,453,0 chrXIV 303234 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=20.58;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3058,333,0 chrXIV 303243 . T C 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=141;Dels=0.00;FS=14.602;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=1.645;QD=19.45;ReadPosRankSum=2.935;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:3,136:141:99:2776,315,0 chrXIV 303460 . G T 1956 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=20.59;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1989,216,0 chrXIV 303465 . T G 1847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;MQRankSum=-0.557;QD=17.26;ReadPosRankSum=2.538;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:3,104:107:99:1880,216,0 chrXIV 303479 . T C 1993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.356;DP=121;Dels=0.00;FS=8.210;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;MQRankSum=-1.848;QD=16.47;ReadPosRankSum=3.327;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:4,117:121:99:2026,225,0 chrXIV 303486 . T C 2054 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=16.98;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2087,240,0 chrXIV 303633 . C T 66.51 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=117.5674;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=0.51;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:12:99,12,0 chrXIV 303657 . C T 2980 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=19.48;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3013,330,0 chrXIV 303695 . G A 3355.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=19.74;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3355,372,0 chrXIV 303902 . G A 3172 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.87;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3205,351,0 chrXIV 304058 . G A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=22.99;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3379,363,0 chrXIV 304064 . C T 2880 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=20.57;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2913,330,0 chrXIV 304073 . C T 2762 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=21.25;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2795,315,0 chrXIV 304122 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.17;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2468,270,0 chrXIV 304231 . C T 3210.99 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.4741;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.94;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3244,363,0 chrXIV 304313 . C T 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=0.044;QD=20.62;ReadPosRankSum=-1.288;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2445,254,0 chrXIV 304316 . C A 2391 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=20.26;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2424,267,0 chrXIV 304355 . G A 1788 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=17.03;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1821,210,0 chrXIV 304361 . T C 1812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.808;QD=17.26;ReadPosRankSum=1.600;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1845,213,0 chrXIV 304693 . C T 2051 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=99.3917;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=18.99;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,104:108:99:2084,225,0 chrXIV 304761 . A G 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=102;Dels=0.02;FS=2.922;HaplotypeScore=9.5928;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-1.333;QD=19.25;ReadPosRankSum=2.399;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:2,96:100:99:1997,228,0 chrXIV 304794 . C T 2065 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.29;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2098,237,0 chrXIV 304877 . A T 2153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=100;Dels=0.00;FS=6.990;HaplotypeScore=5.6857;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.874;QD=21.53;ReadPosRankSum=2.401;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2186,237,0 chrXIV 305066 . A G 3187 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.29;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3220,381,0 chrXIV 305136 . G A 3519.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.46;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3519,393,0 chrXIV 305299 . A G 4743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=205;Dels=0.00;FS=3.875;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.141;QD=23.14;ReadPosRankSum=1.715;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4743,555,0 chrXIV 305505 . G A 5135.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.52;SB=-2.831e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5135,558,0 chrXIV 305568 . A G 6789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=302;Dels=0.00;FS=3.468;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.062;QD=22.48;ReadPosRankSum=1.721;SB=-3.325e+03 GT:AD:DP:GQ:PL 1/1:1,299:302:99:6789,786,0 chrXIV 305637 . G T 4682.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=21.3683;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.48;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4682,516,0 chrXIV 305670 . A G 3777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=201;Dels=0.00;FS=3.121;HaplotypeScore=14.8854;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.809;QD=18.79;ReadPosRankSum=1.645;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:3777,441,0 chrXIV 305724 . A G 4695.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.87;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4695,531,0 chrXIV 305808 . T C 5043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=253;Dels=0.00;FS=3.761;HaplotypeScore=23.7002;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-1.306;QD=19.93;ReadPosRankSum=1.718;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:1,251:253:99:5043,591,0 chrXIV 305863 . A G 6197.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.95;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:6197,699,0 chrXIV 305916 . A G 6155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=292;Dels=0.00;FS=4.654;HaplotypeScore=10.5082;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-1.732;QD=21.08;ReadPosRankSum=1.649;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:1,291:292:99:6155,696,0 chrXIV 305936 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=195;Dels=0.00;FS=3.034;HaplotypeScore=5.5937;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=1.202;QD=17.80;ReadPosRankSum=2.423;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:2,190:195:99:3471,405,0 chrXIV 306024 . T C 6612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;MQRankSum=0.489;QD=23.04;ReadPosRankSum=1.696;SB=-3.327e+03 GT:AD:DP:GQ:PL 1/1:1,286:287:99:6612,771,0 chrXIV 306047 . G A 7815.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=24.89;SB=-4.085e+03 GT:AD:DP:GQ:PL 1/1:0,311:314:99:7815,835,0 chrXIV 306090 . G A 6621.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=13.1200;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=22.67;SB=-3.034e+03 GT:AD:DP:GQ:PL 1/1:0,292:292:99:6621,738,0 chrXIV 306154 . A G 4577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.767;DP=238;Dels=0.00;FS=5.731;HaplotypeScore=10.3473;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;MQRankSum=-0.267;QD=19.23;ReadPosRankSum=2.886;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:3,234:238:99:4577,519,0 chrXIV 306173 . T C 4401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=218;Dels=0.00;FS=8.030;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;MQRankSum=0.960;QD=20.19;ReadPosRankSum=2.427;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:2,214:218:99:4401,489,0 chrXIV 306244 . T C 3532.01 SnpCluster AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=33.48;MQ0=0;QD=19.41;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3532,393,0 chrXIV 306250 . A G 3337.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=0;MQRankSum=-2.878;QD=19.29;ReadPosRankSum=2.960;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3337,384,0 chrXIV 306252 . C T 3395.01 SnpCluster AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=133.0432;MLEAC=2;MLEAF=1.00;MQ=30.22;MQ0=0;QD=19.97;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3395,375,0 chrXIV 306286 . G A 3538.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=2.6566;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=0;QD=15.38;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,225:230:99:3538,384,0 chrXIV 306300 . A G 3931.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=4.9307;MLEAC=2;MLEAF=1.00;MQ=44.04;MQ0=0;QD=15.72;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:3931,438,0 chrXIV 306326 . C T 6876.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.500;DP=373;Dels=0.00;FS=0.000;HaplotypeScore=19.2373;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=-0.153;QD=18.43;ReadPosRankSum=1.323;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:1,372:373:99:6876,771,0 chrXIV 306527 . A G 12220.01 filter AC=2;AF=1.00;AN=2;DP=581;Dels=0.00;FS=0.000;HaplotypeScore=15.0629;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=21.03;SB=-6.503e+03 GT:AD:DP:GQ:PL 1/1:0,577:581:99:12220,1365,0 chrXIV 306600 . C T 11811.01 filter AC=2;AF=1.00;AN=2;DP=565;Dels=0.00;FS=0.000;HaplotypeScore=26.7255;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=20.90;SB=-4.360e+03 GT:AD:DP:GQ:PL 1/1:0,562:565:99:11811,1314,0 chrXIV 306711 . T A 12263.01 filter AC=2;AF=1.00;AN=2;DP=574;Dels=0.00;FS=0.000;HaplotypeScore=26.9206;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=21.36;SB=-4.143e+03 GT:AD:DP:GQ:PL 1/1:0,574:574:99:12263,1362,0 chrXIV 307339 . G A 3772.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.7228;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3772,423,0 chrXIV 307665 . T C 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=186;Dels=0.00;FS=9.318;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-1.864;QD=21.24;ReadPosRankSum=2.908;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:3,182:186:99:3950,447,0 chrXIV 307749 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.6356;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.30;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3269,357,0 chrXIV 307785 . A G 3541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.00;FS=8.529;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.463;QD=21.72;ReadPosRankSum=2.404;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3541,417,0 chrXIV 307827 . A G 4000.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.35;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4000,462,0 chrXIV 307869 . G A 3806.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.21;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3806,417,0 chrXIV 307902 . C T 3651.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=21.86;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3651,390,0 chrXIV 307920 . G A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.70;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3561,405,0 chrXIV 307944 . C T 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=3.654;HaplotypeScore=7.5347;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.529;QD=20.73;ReadPosRankSum=-1.442;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3482,362,0 chrXIV 308154 . T C 3281.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.4115;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.77;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3281,366,0 chrXIV 308304 . G A 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.407;HaplotypeScore=4.5425;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.872;QD=17.93;ReadPosRankSum=1.639;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:2741,315,0 chrXIV 308305 . A G 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=150;Dels=0.00;FS=6.721;HaplotypeScore=4.5425;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-1.262;QD=18.70;ReadPosRankSum=2.384;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:2838,321,0 chrXIV 308412 . A G 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=3.376;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.420;QD=21.36;ReadPosRankSum=1.711;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3461,402,0 chrXIV 308436 . A G 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.3637;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-1.168;QD=21.92;ReadPosRankSum=1.674;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3902,438,0 chrXIV 308673 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=20.07;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3103,339,0 chrXIV 309212 . T C 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.919;QD=21.15;ReadPosRankSum=1.706;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2846,318,0 chrXIV 309245 . T C 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=140;Dels=0.00;FS=6.082;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.167;QD=21.24;ReadPosRankSum=2.892;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:3,136:140:99:3007,339,0 chrXIV 309362 . T C 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=170;Dels=0.00;FS=2.584;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.525;QD=21.12;ReadPosRankSum=2.406;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3591,411,0 chrXIV 309497 . A G 3148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.882;QD=18.63;ReadPosRankSum=1.711;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3181,372,0 chrXIV 309823 . C T 4233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=15.8959;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.137;QD=20.96;ReadPosRankSum=1.155;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4233,447,0 chrXIV 310003 . T C 2943 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.16;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,143:146:99:2976,336,0 chrXIV 310045 . A G 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.660;QD=22.33;ReadPosRankSum=1.705;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2846,318,0 chrXIV 310181 . A G 2419 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.41;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2452,276,0 chrXIV 310209 . C G 2090 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.4982;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.90;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2123,234,0 chrXIV 310493 . T C 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.906;QD=22.06;ReadPosRankSum=1.672;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,171:175:99:3861,432,0 chrXIV 310616 . A G 4242.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=179;Dels=0.00;FS=9.478;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.129;QD=23.70;ReadPosRankSum=2.893;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:4242,480,0 chrXIV 310715 . A G 3942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=186;Dels=0.00;FS=3.029;HaplotypeScore=10.1554;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.191;QD=21.19;ReadPosRankSum=2.344;SB=-2.315e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:3942,438,0 chrXIV 310729 . A G 3824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.328;DP=186;Dels=0.00;FS=12.474;HaplotypeScore=11.0501;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.599;QD=20.56;ReadPosRankSum=3.365;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:4,182:186:99:3824,429,0 chrXIV 311115 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6632;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.28;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3553,396,0 chrXIV 311133 . G A 3028 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=9.3589;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=19.54;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3061,339,0 chrXIV 311376 . C T 3208 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.12;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3241,354,0 chrXIV 311556 . G A 4026.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.5856;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.24;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4026,432,0 chrXIV 311614 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.18;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3126,357,0 chrXIV 311670 . A T 2014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=1.164;QD=15.73;ReadPosRankSum=1.678;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2047,231,0 chrXIV 311673 . G T 2316 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=17.82;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2349,255,0 chrXIV 312173 . A T 2485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=108;Dels=0.00;FS=3.441;HaplotypeScore=15.0023;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.131;QD=23.01;ReadPosRankSum=1.667;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2518,276,0 chrXIV 312312 . A G 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=153;Dels=0.00;FS=12.780;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.099;QD=20.91;ReadPosRankSum=2.941;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3232,366,0 chrXIV 312686 . T G 3804.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.61;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3804,441,0 chrXIV 312912 . G A 2884 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.52;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2917,324,0 chrXIV 313160 . G A 2820 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.93;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2853,318,0 chrXIV 313182 . C T 2959 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.48;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2992,333,0 chrXIV 313482 . C T 2964 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.12;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2997,336,0 chrXIV 313645 . C T 1816 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.53;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1849,210,0 chrXIV 313792 . C T 3696.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.54;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3696,405,0 chrXIV 313908 . A G 3837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=152;Dels=0.00;FS=4.916;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.641;QD=25.24;ReadPosRankSum=1.709;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3837,420,0 chrXIV 313965 . T C 4005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.404;QD=23.98;ReadPosRankSum=1.649;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4005,441,0 chrXIV 314331 . T C 4150.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.75;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,196:200:99:4150,486,0 chrXIV 314373 . C A 3100 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.53;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3133,345,0 chrXIV 314700 . G A 2538 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.33;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2571,288,0 chrXIV 314885 . C T 4060.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.60;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4060,453,0 chrXIV 314976 . G A 4001.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.86;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4001,447,0 chrXIV 315076 . C T 5044.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.14;SB=-2.770e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5044,549,0 chrXIV 315396 . A G 3778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.8290;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.766;QD=21.22;ReadPosRankSum=2.381;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3778,435,0 chrXIV 315475 . G A 3020 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3053,330,0 chrXIV 315726 . G A 2781 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.25;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2814,324,0 chrXIV 315771 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.8304;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2780,309,0 chrXIV 315912 . T C 3134 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.88;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3167,351,0 chrXIV 316244 . C T 2789 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.96;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2822,303,0 chrXIV 316253 . A G 2439 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=19.51;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2472,285,0 chrXIV 316782 . C T 2726 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.10;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2759,306,0 chrXIV 316808 . A G 2996 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.87;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3029,348,0 chrXIV 316955 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2926,312,0 chrXIV 317015 . G A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.95;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3292,372,0 chrXIV 317078 . T C 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.539;QD=22.26;ReadPosRankSum=1.616;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3985,453,0 chrXIV 317738 . A T 4874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=203;Dels=0.00;FS=3.841;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.698;QD=24.01;ReadPosRankSum=1.715;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4874,546,0 chrXIV 318057 . C T 5833.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=15.0903;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.87;SB=-2.947e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5833,642,0 chrXIV 318127 . C T 7110.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=12.7811;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-3.816e+03 GT:AD:DP:GQ:PL 1/1:0,294:295:99:7110,775,0 chrXIV 318162 . T C 5806.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=20.4961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-2.776e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:5806,672,0 chrXIV 318393 . A T 5151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=223;Dels=0.00;FS=10.391;HaplotypeScore=13.2914;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.716;QD=23.10;ReadPosRankSum=2.915;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:3,220:223:99:5151,567,0 chrXIV 318591 . G T 3772.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.3194;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.43;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3772,417,0 chrXIV 318794 . A G 3364.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=159;Dels=0.00;FS=3.263;HaplotypeScore=5.1526;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-0.599;QD=21.16;ReadPosRankSum=1.689;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3364,378,0 chrXIV 318818 . G C 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=160;Dels=0.00;FS=3.263;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.512;QD=20.49;ReadPosRankSum=1.667;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3278,378,0 chrXIV 318970 . A G 4517.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.90;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4517,513,0 chrXIV 319024 . A T 3936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.625;QD=24.15;ReadPosRankSum=1.711;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3936,429,0 chrXIV 319149 . A G 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.3963;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.422;QD=22.34;ReadPosRankSum=1.655;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3027,345,0 chrXIV 319642 . T C 4409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.614;DP=193;Dels=0.00;FS=7.981;HaplotypeScore=21.1243;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=2.405;QD=22.84;ReadPosRankSum=3.760;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:5,188:193:99:4409,501,0 chrXIV 319911 . G A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.02;FS=0.000;HaplotypeScore=29.5125;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=19.57;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3445,381,0 chrXIV 319940 . C T 3686.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=18.3069;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.07;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3686,393,0 chrXIV 320160 . T C 2872 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.93;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2905,327,0 chrXIV 320891 . C T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.7682;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.63;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3402,372,0 chrXIV 321214 . A G 4312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=178;Dels=0.00;FS=3.992;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.693;QD=24.22;ReadPosRankSum=1.693;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4312,474,0 chrXIV 321647 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2999,339,0 chrXIV 321973 . G T 1642 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.19;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1675,180,0 chrXIV 321987 . T G 1723 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.38;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1756,201,0 chrXIV 322144 . C T 1491 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.05;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1524,165,0 chrXIV 322462 . A G 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=185;Dels=0.00;FS=3.783;HaplotypeScore=15.1341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.734;QD=22.22;ReadPosRankSum=1.713;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4110,483,0 chrXIV 322552 . T C 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=3.044;HaplotypeScore=9.0207;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.516;QD=22.20;ReadPosRankSum=1.626;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2964,333,0 chrXIV 322774 . C T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.47;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3402,366,0 chrXIV 322803 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.14;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3249,363,0 chrXIV 322936 . G A 4309.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.6979;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.17;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:4309,480,0 chrXIV 323011 . T G 3926.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8932;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.18;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3926,459,0 chrXIV 323069 . A G 4248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=205;Dels=0.00;FS=6.571;HaplotypeScore=8.4469;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.138;QD=20.72;ReadPosRankSum=2.389;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:4248,477,0 chrXIV 323136 . A G 4003.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.506;QD=20.12;ReadPosRankSum=1.680;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4003,459,0 chrXIV 323238 . A C 4632.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.1860;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.75;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4632,531,0 chrXIV 323308 . G A 4078.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4078,441,0 chrXIV 323530 . A G 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.073;QD=20.40;ReadPosRankSum=1.683;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2950,330,0 chrXIV 323606 . T C 3903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=176;Dels=0.00;FS=2.472;HaplotypeScore=11.6428;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.240;QD=22.18;ReadPosRankSum=1.909;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:3903,444,0 chrXIV 323787 . A G 4196.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.84;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4196,471,0 chrXIV 323874 . C G 4171.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.0697;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.50;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4171,480,0 chrXIV 324029 . G A 4907.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4907,543,0 chrXIV 324247 . G C 3192 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=13.4329;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.71;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3225,369,0 chrXIV 324447 . C T 2765 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.04;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2798,303,0 chrXIV 324866 . T C 5324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.175;QD=23.05;ReadPosRankSum=1.702;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:1,229:231:99:5324,597,0 chrXIV 325094 . G A 3835.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.17;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3835,414,0 chrXIV 325458 . C T 4314.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.19;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4314,471,0 chrXIV 326003 . G A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.65;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3510,393,0 chrXIV 326012 . G A 3314.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.96;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3314,369,0 chrXIV 326183 . T C 4580.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.61;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4580,510,0 chrXIV 326398 . A G 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=171;Dels=0.00;FS=2.894;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.180;QD=22.71;ReadPosRankSum=2.378;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3884,444,0 chrXIV 326545 . C A 1838 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=13.0519;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.35;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1871,207,0 chrXIV 326625 . C G 2130 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.1252;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.88;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2163,249,0 chrXIV 326711 . G A 2404 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=22.26;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2437,264,0 chrXIV 326722 . A G 2189 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=19.37;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2222,261,0 chrXIV 327095 . A G 4228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.235;DP=194;Dels=0.00;FS=13.112;HaplotypeScore=14.6182;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.643;QD=21.79;ReadPosRankSum=3.397;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:4,190:194:99:4228,480,0 chrXIV 327287 . T C 4187.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.92;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4187,480,0 chrXIV 327569 . T G 4435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=189;Dels=0.00;FS=2.988;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.259;QD=23.47;ReadPosRankSum=2.383;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:2,184:189:99:4435,492,0 chrXIV 327681 . T G 3074 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.4649;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.28;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3107,351,0 chrXIV 327916 . G A 4642.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=18.8777;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.93;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4642,501,0 chrXIV 328022 . C T 3770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.789;QD=21.54;ReadPosRankSum=0.748;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,168:175:99:3770,426,0 chrXIV 328226 . T C 4488.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.0191;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.44;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4488,498,0 chrXIV 328483 . G A 3034 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.99;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3067,336,0 chrXIV 328646 . T C 4469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.7922;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.624;QD=22.57;ReadPosRankSum=1.697;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:1,196:198:99:4469,501,0 chrXIV 328673 . A G 4377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=197;Dels=0.00;FS=13.981;HaplotypeScore=5.9167;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.948;QD=22.22;ReadPosRankSum=2.933;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:3,191:197:99:4377,495,0 chrXIV 328880 . C T 5426.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=23.1422;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.15;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5426,591,0 chrXIV 330284 . A T 2557 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.67;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2590,288,0 chrXIV 330285 . T G 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=0.506;QD=19.26;ReadPosRankSum=1.705;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2556,291,0 chrXIV 330365 . A G 2829 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.76;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2862,315,0 chrXIV 330395 . G A 3521.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.32;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3521,378,0 chrXIV 330808 . A G 3460.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.2922;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.03;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3460,387,0 chrXIV 331401 . C T 3107 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3140,351,0 chrXIV 331514 . G A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=22.30;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3880,426,0 chrXIV 331522 . C T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.93;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3537,396,0 chrXIV 331587 . T A 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=149;Dels=0.00;FS=3.820;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=1.072;QD=21.26;ReadPosRankSum=1.661;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3201,351,0 chrXIV 332278 . G A 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=5.239;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=0.594;QD=22.90;ReadPosRankSum=0.013;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,136:139:99:3216,354,0 chrXIV 332293 . T C 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-0.137;QD=21.23;ReadPosRankSum=1.705;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2729,309,0 chrXIV 332613 . C G 5407.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=12.6097;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.51;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5407,600,0 chrXIV 332884 . A G 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=198;Dels=0.00;FS=2.925;HaplotypeScore=15.0707;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.280;QD=16.87;ReadPosRankSum=2.425;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:3341,390,0 chrXIV 334339 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.2303;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.36;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3598,396,0 chrXIV 334965 . T C 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.183;QD=22.71;ReadPosRankSum=1.651;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3906,453,0 chrXIV 335000 . T A 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.185;QD=23.70;ReadPosRankSum=1.686;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3555,390,0 chrXIV 335033 . A G 3185 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.82;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3218,375,0 chrXIV 335091 . A G 2895 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.83;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2928,336,0 chrXIV 335092 . T A 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=3.950;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.105;QD=20.86;ReadPosRankSum=1.639;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3162,345,0 chrXIV 335197 . G A 3189 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.11;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3222,348,0 chrXIV 335243 . C A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.13;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3318,366,0 chrXIV 335276 . A G 3382.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.10;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3382,378,0 chrXIV 335341 . A T 2717 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.06;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2750,300,0 chrXIV 335376 . A G 2467 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=18.27;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2500,282,0 chrXIV 335395 . G A 2623 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=19.72;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2656,288,0 chrXIV 335707 . T G 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=3.131;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.498;QD=19.21;ReadPosRankSum=1.613;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2838,330,0 chrXIV 335910 . T C 2579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=133;Dels=0.00;FS=3.013;HaplotypeScore=11.8784;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.835;QD=19.39;ReadPosRankSum=2.412;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:2,129:133:99:2612,300,0 chrXIV 336052 . C G 3279.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:3279,366,0 chrXIV 336158 . T C 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=114;Dels=0.00;FS=7.385;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.788;QD=22.58;ReadPosRankSum=2.363;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2607,297,0 chrXIV 336315 . C G 2387 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2420,279,0 chrXIV 336437 . G A 3019 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.95;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3052,327,0 chrXIV 336465 . A G 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=135;Dels=0.00;FS=3.680;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.273;QD=22.07;ReadPosRankSum=1.706;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:3013,342,0 chrXIV 336508 . A T 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=132;Dels=0.00;FS=7.909;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.854;QD=22.70;ReadPosRankSum=2.412;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3030,336,0 chrXIV 336617 . C T 4831.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4831,528,0 chrXIV 336941 . G A 4485.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=7.5702;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=17.59;SB=-3.049e+03 GT:AD:DP:GQ:PL 1/1:0,252:255:99:4485,510,0 chrXIV 336952 . A G 4273.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=3.1859;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=16.12;SB=-3.210e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:4273,483,0 chrXIV 336970 . A C 4417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=276;Dels=0.00;FS=6.427;HaplotypeScore=12.3509;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=0.963;QD=16.00;ReadPosRankSum=2.369;SB=-3.452e+03 GT:AD:DP:GQ:PL 1/1:2,272:276:99:4417,498,0 chrXIV 337051 . C T 5650.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.51;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:5650,621,0 chrXIV 337877 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.58;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2933,318,0 chrXIV 337920 . A G 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=4.449;HaplotypeScore=8.3806;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.110;QD=22.92;ReadPosRankSum=1.703;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2760,309,0 chrXIV 337949 . T C 2846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=135;Dels=0.00;FS=2.570;HaplotypeScore=8.1454;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-1.440;QD=21.08;ReadPosRankSum=2.903;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:2879,327,0 chrXIV 338161 . T C 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=3.641;HaplotypeScore=8.6750;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.585;QD=21.32;ReadPosRankSum=1.662;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3210,372,0 chrXIV 338337 . G A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.59;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3467,372,0 chrXIV 338359 . C T 3332.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.21;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3332,372,0 chrXIV 338424 . G A 4362.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.97;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4362,471,0 chrXIV 338522 . G T 4218.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.7579;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.74;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4218,471,0 chrXIV 338586 . G A 3113 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.62;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3146,351,0 chrXIV 338610 . T C 3415.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.1681;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=19.85;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3415,390,0 chrXIV 338751 . G A 3789.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.60;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3789,408,0 chrXIV 339555 . C T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=25.57;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3964,429,0 chrXIV 340266 . A T 3983.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.07;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3983,453,0 chrXIV 340286 . A T 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=180;Dels=0.00;FS=3.583;HaplotypeScore=3.3481;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=0.331;QD=17.94;ReadPosRankSum=1.693;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3264,369,0 chrXIV 340288 . A C 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.353;DP=181;Dels=0.00;FS=14.272;HaplotypeScore=4.1368;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-2.033;QD=18.59;ReadPosRankSum=3.372;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:4,176:181:99:3365,378,0 chrXIV 340618 . A G 5214.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.6053;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5214,591,0 chrXIV 340804 . G T 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.2525;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.824;QD=20.57;ReadPosRankSum=0.509;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:3908,432,0 chrXIV 340840 . T C 3359.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.30;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3359,393,0 chrXIV 340939 . G A 2777 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=24.36;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2810,312,0 chrXIV 340970 . C T 2301 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.78;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2334,252,0 chrXIV 340976 . T C 2172 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.50;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2205,249,0 chrXIV 341067 . C A 2433 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.88;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2466,267,0 chrXIV 341465 . G A 4318.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.53;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4318,471,0 chrXIV 341642 . A G 4068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.680;DP=196;Dels=0.00;FS=8.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-1.178;QD=20.76;ReadPosRankSum=3.744;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:5,189:196:99:4068,456,0 chrXIV 341663 . G C 3698.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.78;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,174:178:99:3698,429,0 chrXIV 341705 . A T 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.734;DP=175;Dels=0.00;FS=6.052;HaplotypeScore=20.2639;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-0.521;QD=18.86;ReadPosRankSum=2.947;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:3301,372,0 chrXIV 341764 . G C 3273.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.84;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3273,378,0 chrXIV 341773 . A G 3224.03 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.15;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3257,369,0 chrXIV 342273 . C G 3661.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.1296;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.79;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3661,426,0 chrXIV 342387 . A T 3786.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.58;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3786,405,0 chrXIV 342435 . T C 4164.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.79;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4164,471,0 chrXIV 342494 . C A 2919 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=21.00;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2952,315,0 chrXIV 342499 . T A 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.109;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-1.159;QD=18.84;ReadPosRankSum=1.680;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2557,285,0 chrXIV 342707 . A G 3557.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.2041;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.36;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3557,399,0 chrXIV 342782 . C T 3188 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.94;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3221,363,0 chrXIV 342811 . C A 2791 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.47;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2824,309,0 chrXIV 342839 . T C 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=4.304;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.233;QD=20.55;ReadPosRankSum=1.680;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2766,327,0 chrXIV 342917 . G T 4305.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4305,480,0 chrXIV 343049 . G C 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=3.704;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.477;QD=22.45;ReadPosRankSum=1.107;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2794,318,0 chrXIV 343922 . G T 5394.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=14.5556;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.20;SB=-3.146e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:5394,594,0 chrXIV 343991 . G A 5652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=286;Dels=0.01;FS=0.000;HaplotypeScore=43.8833;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.221;QD=19.76;ReadPosRankSum=1.720;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:1,281:283:99:5652,618,0 chrXIV 344176 . A T 4768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=10.5677;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.538;QD=23.49;ReadPosRankSum=1.664;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4768,511,0 chrXIV 344260 . G A 3387.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.58;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3387,378,0 chrXIV 344398 . C T 3392.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.03;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3392,369,0 chrXIV 344746 . T C 3078 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.80;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3111,357,0 chrXIV 344873 . T G 4053.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.7618;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.98;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4053,459,0 chrXIV 344911 . G T 4148.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.84;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4148,447,0 chrXIV 345058 . C T 5996.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=13.7930;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.78;SB=-2.499e+03 GT:AD:DP:GQ:PL 1/1:0,237:242:99:5996,649,0 chrXIV 345099 . A G 4914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.316;DP=230;Dels=0.00;FS=14.543;HaplotypeScore=7.3230;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.194;QD=21.37;ReadPosRankSum=3.400;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:4,225:230:99:4914,555,0 chrXIV 345121 . G A 4794.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.59;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4794,543,0 chrXIV 345280 . T C 3905.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.33;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:3905,459,0 chrXIV 345668 . T C 2952 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.24;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2985,333,0 chrXIV 345712 . A G 3123 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.15;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3156,351,0 chrXIV 345744 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.28;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2933,330,0 chrXIV 345915 . G A 5077.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=21.1737;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.40;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:5077,546,0 chrXIV 346068 . C T 5372.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=16.7939;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.57;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5372,585,0 chrXIV 346103 . T G 4535.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=8.1600;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.29;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:4535,516,0 chrXIV 346115 . A T 4548.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.2140;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.58;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4548,516,0 chrXIV 346414 . A C 3845.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.89;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3845,435,0 chrXIV 346690 . T A 5197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=214;Dels=0.00;FS=2.768;HaplotypeScore=12.7880;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.308;QD=24.29;ReadPosRankSum=2.392;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:2,212:214:99:5197,570,0 chrXIV 346866 . G A 5061.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.1313;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.59;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5061,567,0 chrXIV 347047 . T C 3504.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.90;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3504,393,0 chrXIV 347194 . T C 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.764;DP=166;Dels=0.00;FS=2.584;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.073;QD=22.72;ReadPosRankSum=2.921;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3772,429,0 chrXIV 347234 . G A 3187 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.0128;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.13;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3220,357,0 chrXIV 347308 . T C 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.4814;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.094;QD=21.52;ReadPosRankSum=1.669;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3572,399,0 chrXIV 347517 . A G 2659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.534;QD=19.84;ReadPosRankSum=1.680;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2692,303,0 chrXIV 347615 . T C 1423 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.89;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1456,165,0 chrXIV 347622 . T A 1455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=3.854;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.968;QD=21.40;ReadPosRankSum=1.630;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1488,165,0 chrXIV 347708 . G C 1713 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.47;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1746,198,0 chrXIV 347728 . A G 1791 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.47;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1824,204,0 chrXIV 347745 . T C 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.2771;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=0.951;QD=19.62;ReadPosRankSum=1.698;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2034,231,0 chrXIV 348360 . T C 4423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=192;Dels=0.00;FS=3.033;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.531;QD=23.04;ReadPosRankSum=2.386;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4423,498,0 chrXIV 348462 . G A 3430.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=20.18;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3430,381,0 chrXIV 348465 . T C 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=168;Dels=0.00;FS=10.140;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;MQRankSum=-2.287;QD=19.71;ReadPosRankSum=2.405;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:2,164:168:99:3312,375,0 chrXIV 348486 . C G 2586 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=17.59;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2619,303,0 chrXIV 348533 . G A 2127 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=16.36;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2160,237,0 chrXIV 348537 . A G 1890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=0.595;QD=14.77;ReadPosRankSum=1.651;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:1923,222,0 chrXIV 348669 . G A 2584 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=25.33;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2617,282,0 chrXIV 348734 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8227;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=20.05;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1797,195,0 chrXIV 348745 . A G 1366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=3.493;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;MQRankSum=1.185;QD=17.51;ReadPosRankSum=1.687;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,75:78:99:1399,165,0 chrXIV 348754 . A T 1623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=4.539;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;MQRankSum=-1.085;QD=17.84;ReadPosRankSum=1.694;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1656,183,0 chrXIV 348823 . T C 2875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=-1.126;QD=17.97;ReadPosRankSum=1.710;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2908,330,0 chrXIV 348831 . A C 2965 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.01;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=18.30;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2998,336,0 chrXIV 348874 . T A 2465 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=15.31;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2498,267,0 chrXIV 348895 . A G 1487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.290;DP=137;Dels=0.00;FS=18.703;HaplotypeScore=3.4666;MLEAC=2;MLEAF=1.00;MQ=37.67;MQ0=0;MQRankSum=-2.537;QD=10.85;ReadPosRankSum=3.393;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:4,131:137:99:1520,174,0 chrXIV 348902 . A T 1405 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=11.71;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1438,168,0 chrXIV 348931 . C T 1833 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;QD=14.55;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1866,216,0 chrXIV 348956 . T C 2340 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=0;QD=16.36;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2373,276,0 chrXIV 349001 . T A 4436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;DP=241;Dels=0.00;FS=5.536;HaplotypeScore=7.2483;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=-1.064;QD=18.41;ReadPosRankSum=1.936;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:3,238:241:99:4436,504,0 chrXIV 349014 . G A 5353.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.75;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5353,591,0 chrXIV 349133 . T A 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=20.1642;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;MQRankSum=-0.322;QD=22.11;ReadPosRankSum=1.712;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3825,420,0 chrXIV 349343 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=18.78;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3245,363,0 chrXIV 349351 . T C 3126 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=17.66;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3159,363,0 chrXIV 349357 . C T 3045 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=17.01;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3078,351,0 chrXIV 349397 . A G 3182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=3.923;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=-1.167;QD=16.75;ReadPosRankSum=1.714;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:3215,381,0 chrXIV 349523 . T C 4055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.685;QD=23.44;ReadPosRankSum=1.712;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4055,459,0 chrXIV 349556 . T C 4791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=16.8521;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=1.380;QD=21.20;ReadPosRankSum=1.655;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4791,543,0 chrXIV 349690 . G A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.5096;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.81;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3496,402,0 chrXIV 349827 . A C 124.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.474;DP=173;Dels=0.04;FS=5.265;HaplotypeScore=295.2139;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.773;QD=0.72;ReadPosRankSum=-7.371;SB=2.87 GT:AD:DP:GQ:PL 1/1:129,28:166:18:157,18,0 chrXIV 349972 . T C 4257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.4890;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.071;QD=21.61;ReadPosRankSum=1.661;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:1,195:197:99:4257,489,0 chrXIV 350057 . C T 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=3.089;HaplotypeScore=14.3774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-1.628;QD=19.95;ReadPosRankSum=-0.799;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3372,369,0 chrXIV 350461 . T C 3125 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.16;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3158,369,0 chrXIV 350489 . A C 2558 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.32;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2591,288,0 chrXIV 350601 . C T 3929.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.7028;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.24;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3929,429,0 chrXIV 350657 . G A 2473 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.02;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=17.54;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2506,285,0 chrXIV 350676 . T C 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=144;Dels=0.00;FS=2.971;HaplotypeScore=103.8704;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=0.459;QD=17.49;ReadPosRankSum=2.415;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:2,140:144:99:2552,288,0 chrXIV 350837 . C A 3151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.444;DP=156;Dels=0.00;FS=3.543;HaplotypeScore=8.9492;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;MQRankSum=0.910;QD=20.20;ReadPosRankSum=1.488;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3184,348,0 chrXIV 350848 . A C 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;MQRankSum=0.682;QD=18.75;ReadPosRankSum=2.948;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:3,133:138:99:2620,300,0 chrXIV 350864 . T C 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=3.297;HaplotypeScore=7.8872;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=-0.553;QD=19.65;ReadPosRankSum=1.708;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2803,318,0 chrXIV 350966 . C G 3007 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=17.90;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3040,351,0 chrXIV 350980 . T C 2770 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.79;MQ0=0;QD=16.99;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:2803,312,0 chrXIV 350992 . A G 2558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=157;Dels=0.00;FS=2.579;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=39.34;MQ0=0;MQRankSum=-2.186;QD=16.29;ReadPosRankSum=2.943;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:3,154:157:99:2591,300,0 chrXIV 351006 . C G 2150 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=0;QD=14.33;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2183,252,0 chrXIV 351009 . A T 2098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=145;Dels=0.01;FS=2.993;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=39.36;MQ0=0;MQRankSum=-0.009;QD=14.47;ReadPosRankSum=2.346;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2131,231,0 chrXIV 351050 . T G 2311 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.0121;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=17.25;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2344,273,0 chrXIV 351221 . A G 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=1.055;QD=23.06;ReadPosRankSum=1.654;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:3146,363,0 chrXIV 351465 . A G 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.4588;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-1.509;QD=22.09;ReadPosRankSum=0.619;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3147,344,0 chrXIV 351490 . A G 3007 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.03;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3040,351,0 chrXIV 351603 . C T 2944 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=19.89;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2977,330,0 chrXIV 351607 . T A 2986 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.432;QD=19.91;ReadPosRankSum=1.617;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3019,336,0 chrXIV 351608 . G A 2992 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=20.08;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3025,336,0 chrXIV 351622 . T G 2659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-1.545;QD=17.97;ReadPosRankSum=1.709;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2692,306,0 chrXIV 351777 . A G 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=2.977;HaplotypeScore=10.6071;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.254;QD=21.37;ReadPosRankSum=2.187;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3239,375,0 chrXIV 351850 . C T 2694 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.21;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2727,294,0 chrXIV 351884 . G A 3173 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.86;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3206,342,0 chrXIV 352081 . C A 3503.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3503,387,0 chrXIV 352437 . C T 1600 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.3658;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.20;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1633,186,0 chrXIV 352733 . G C 2141 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.62;MQ0=0;QD=20.39;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2174,246,0 chrXIV 353111 . C T 4658.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.89;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4658,510,0 chrXIV 353151 . T C 5025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.230;QD=24.28;ReadPosRankSum=1.715;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:5025,567,0 chrXIV 353180 . A G 4728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=212;Dels=0.00;FS=9.379;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.832;QD=22.30;ReadPosRankSum=2.194;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:2,209:212:99:4728,531,0 chrXIV 353234 . A G 6272.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=9.7865;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.85;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:6272,726,0 chrXIV 353474 . C A 6556.01 PASS AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=19.1314;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=20.75;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:0,316:316:99:6556,723,0 chrXIV 353528 . A G 5499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.896;QD=21.40;ReadPosRankSum=2.373;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:2,254:257:99:5499,615,0 chrXIV 353690 . C A 3284.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.6382;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.78;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3284,366,0 chrXIV 353786 . A T 2480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=120;Dels=0.00;FS=4.958;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-1.179;QD=20.67;ReadPosRankSum=1.674;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2513,279,0 chrXIV 353792 . A G 2174 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.41;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2207,258,0 chrXIV 353924 . G A 2324 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.92;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2357,258,0 chrXIV 354061 . C T 2891 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.90;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2924,318,0 chrXIV 354131 . G C 2484 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2811;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.38;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2517,291,0 chrXIV 354254 . A G 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=157;Dels=0.00;FS=3.578;HaplotypeScore=8.2396;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=-1.531;QD=23.22;ReadPosRankSum=1.687;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,154:157:99:3646,411,0 chrXIV 354368 . A G 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=133;Dels=0.00;FS=3.315;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.498;QD=20.38;ReadPosRankSum=1.706;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2743,312,0 chrXIV 354641 . A G 5320.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=11.8624;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.33;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5320,618,0 chrXIV 354740 . A G 4017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=178;Dels=0.00;FS=6.095;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.847;QD=22.57;ReadPosRankSum=2.949;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:3,174:178:99:4017,450,0 chrXIV 354924 . G T 4525.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.2227;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.07;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4525,489,0 chrXIV 354992 . A G 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.5009;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.354;QD=20.94;ReadPosRankSum=1.712;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3686,423,0 chrXIV 355079 . C T 3286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.6305;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.478;QD=21.76;ReadPosRankSum=0.947;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3286,360,0 chrXIV 355610 . C T 2252 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.98;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2285,249,0 chrXIV 355643 . G A 1733 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3002;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.40;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1766,201,0 chrXIV 355873 . G A 5169.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.85;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:5169,559,0 chrXIV 355921 . T C 5275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=226;Dels=0.00;FS=5.603;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.440;QD=23.34;ReadPosRankSum=2.916;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:3,223:226:99:5275,603,0 chrXIV 355985 . C T 6372.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.19;SB=-3.118e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:6372,685,0 chrXIV 356010 . C T 6300.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=8.7491;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.77;SB=-3.301e+03 GT:AD:DP:GQ:PL 1/1:0,264:265:99:6300,693,0 chrXIV 356062 . A G 4906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.681;QD=23.03;ReadPosRankSum=1.716;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:1,210:213:99:4906,543,0 chrXIV 356245 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.3082;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.04;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2879,309,0 chrXIV 356343 . G T 2437 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=18.89;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2470,267,0 chrXIV 356361 . G A 2624 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=18.74;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2657,294,0 chrXIV 356370 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=19.31;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2659,285,0 chrXIV 356379 . A C 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=143;Dels=0.00;FS=2.823;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=-1.428;QD=18.89;ReadPosRankSum=2.363;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:2734,306,0 chrXIV 356473 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=19.89;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3136,354,0 chrXIV 356489 . T C 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=1.142;QD=21.13;ReadPosRankSum=1.683;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3033,345,0 chrXIV 356515 . C T 2791 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9603;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.94;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2824,321,0 chrXIV 356568 . T G 3209.99 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.32;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3243,384,0 chrXIV 356615 . A C 3983.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.89;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3983,453,0 chrXIV 356637 . G T 4078.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.91;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4078,462,0 chrXIV 356684 . T C 4513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.280;DP=215;Dels=0.00;FS=8.947;HaplotypeScore=15.9631;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=1.724;QD=20.99;ReadPosRankSum=3.362;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:4,209:215:99:4513,519,0 chrXIV 356726 . T C 5751.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=3.5689;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=23.96;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5751,648,0 chrXIV 356756 . C T 6332.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=13.6981;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=22.70;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,277:279:99:6332,693,0 chrXIV 356876 . A G 1972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;MQRankSum=-0.600;QD=16.30;ReadPosRankSum=2.348;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2005,231,0 chrXIV 356906 . A T 2424 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;QD=16.27;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2457,285,0 chrXIV 356935 . T A 4048.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.8499;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;QD=20.34;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4048,438,0 chrXIV 356959 . T G 3915.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=20.61;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3915,429,0 chrXIV 357088 . A G 2230 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=22.99;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2263,258,0 chrXIV 357348 . T C 3511.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.02;FS=0.000;HaplotypeScore=50.2988;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=18.29;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3511,393,0 chrXIV 357361 . A T 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=202;Dels=0.00;FS=2.829;HaplotypeScore=8.3631;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-0.954;QD=18.52;ReadPosRankSum=2.389;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:3741,408,0 chrXIV 357370 . A G 3690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=197;Dels=0.00;FS=5.465;HaplotypeScore=7.3503;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=0.780;QD=18.73;ReadPosRankSum=2.954;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:3,193:197:99:3690,414,0 chrXIV 357524 . T C 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-0.730;QD=21.83;ReadPosRankSum=1.711;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3668,426,0 chrXIV 357854 . A G 6902.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=5.9098;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.34;SB=-3.270e+03 GT:AD:DP:GQ:PL 1/1:0,309:309:99:6902,798,0 chrXIV 357873 . C T 7715.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=15.0963;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.49;SB=-4.029e+03 GT:AD:DP:GQ:PL 1/1:0,343:343:99:7715,844,0 chrXIV 358013 . T C 7972.01 PASS AC=2;AF=1.00;AN=2;DP=360;Dels=0.00;FS=0.000;HaplotypeScore=27.1978;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.14;SB=-3.847e+03 GT:AD:DP:GQ:PL 1/1:0,360:360:99:7972,921,0 chrXIV 358067 . T C 7972.01 filter AC=2;AF=1.00;AN=2;DP=361;Dels=0.00;FS=0.000;HaplotypeScore=20.9661;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.08;SB=-4.218e+03 GT:AD:DP:GQ:PL 1/1:0,361:361:99:7972,885,0 chrXIV 358109 . G A 7691.01 PASS AC=2;AF=1.00;AN=2;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=21.6177;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.75;SB=-3.943e+03 GT:AD:DP:GQ:PL 1/1:0,337:338:99:7691,829,0 chrXIV 358281 . G T 6388.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=10.5405;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.54;SB=-3.911e+03 GT:AD:DP:GQ:PL 1/1:0,306:311:99:6388,699,0 chrXIV 358300 . G C 5744.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=12.1909;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.15;SB=-3.283e+03 GT:AD:DP:GQ:PL 1/1:0,274:285:99:5744,648,0 chrXIV 358346 . T C 5117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=0.807;QD=20.39;ReadPosRankSum=1.704;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:5117,588,0 chrXIV 358507 . G C 5876.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=14.6082;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.76;SB=-2.867e+03 GT:AD:DP:GQ:PL 1/1:0,277:283:99:5876,654,0 chrXIV 358519 . C G 5875.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.98;SB=-2.855e+03 GT:AD:DP:GQ:PL 1/1:0,277:280:99:5875,675,0 chrXIV 358643 . A G 5096.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.41;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5096,576,0 chrXIV 358757 . C T 5024.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.9055;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.04;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5024,546,0 chrXIV 358910 . T C 2580 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.55;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2613,288,0 chrXIV 359017 . T A 1603 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.1914;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=17.62;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1636,183,0 chrXIV 359040 . T C 1627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.7686;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-1.037;QD=19.84;ReadPosRankSum=2.330;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1660,186,0 chrXIV 359088 . C G 2007 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=96.4188;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.11;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2040,234,0 chrXIV 359147 . G A 1435 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=8.7647;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=19.13;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1468,162,0 chrXIV 359204 . T C 1729 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.89;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1762,201,0 chrXIV 359465 . A T 2127 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.02;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2160,243,0 chrXIV 359506 . T G 2010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.271;QD=24.22;ReadPosRankSum=1.649;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:2043,225,0 chrXIV 360024 . G A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.81;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3467,393,0 chrXIV 360426 . T C 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.270;DP=166;Dels=0.00;FS=13.762;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.143;QD=20.33;ReadPosRankSum=3.407;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:4,162:166:99:3374,393,0 chrXIV 360775 . T C 2837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.679;DP=143;Dels=0.00;FS=9.409;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.464;QD=19.84;ReadPosRankSum=2.650;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:3,138:143:99:2870,330,0 chrXIV 360781 . G A 3072 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.10;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3105,339,0 chrXIV 361119 . C T 3184 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.7902;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=20.41;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3217,348,0 chrXIV 361125 . T C 3083 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.3462;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=18.80;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3116,348,0 chrXIV 361314 . G T 4036.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.8322;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=20.70;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4036,447,0 chrXIV 361325 . C G 3920.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=20.00;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:3920,438,0 chrXIV 361589 . A G 2525 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.3671;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=20.70;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2558,294,0 chrXIV 361599 . C T 2630 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=20.55;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2663,297,0 chrXIV 361770 . C T 3538.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.8807;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.97;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3538,387,0 chrXIV 361812 . G C 2994 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.79;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3027,345,0 chrXIV 361814 . C A 3058 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.38;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3091,339,0 chrXIV 361854 . A G 2563 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.02;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2596,291,0 chrXIV 361915 . C A 3020 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3053,339,0 chrXIV 362075 . G T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.8545;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.70;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3265,360,0 chrXIV 362256 . G C 4414.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.25;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4414,510,0 chrXIV 362483 . G A 2959 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.6264;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.92;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2992,324,0 chrXIV 362538 . T C 2079 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=20.38;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2112,234,0 chrXIV 362544 . C A 1992 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=20.54;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2025,228,0 chrXIV 362586 . T A 1657 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=19.05;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1690,189,0 chrXIV 362791 . C T 2019 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.60;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2052,222,0 chrXIV 362793 . C T 1932 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.12;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1965,219,0 chrXIV 362940 . T C 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=115;Dels=0.00;FS=2.714;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.248;QD=22.42;ReadPosRankSum=2.385;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2611,294,0 chrXIV 362994 . T C 2821 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.93;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2854,318,0 chrXIV 363234 . C T 3422.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3422,369,0 chrXIV 363393 . T A 3484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.192;QD=22.48;ReadPosRankSum=1.710;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3484,384,0 chrXIV 363496 . T C 3123 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.02;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3156,357,0 chrXIV 363549 . G A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.25;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3788,405,0 chrXIV 363624 . C T 4297.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.98;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4297,465,0 chrXIV 363861 . C T 2832 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.62;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2865,315,0 chrXIV 364020 . C T 2418 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2451,273,0 chrXIV 364611 . T C 2621 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.01;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2654,300,0 chrXIV 364966 . G A 3463.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3463,375,0 chrXIV 365449 . G A 3344.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3344,363,0 chrXIV 365596 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.08;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,126:130:99:2774,318,0 chrXIV 365714 . C T 3472.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3472,378,0 chrXIV 365801 . A T 4140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.417;DP=206;Dels=0.00;FS=1.887;HaplotypeScore=9.4004;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=0.511;QD=20.10;ReadPosRankSum=3.366;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:4,202:206:99:4140,456,0 chrXIV 365802 . T G 3987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.375;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.4004;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=0.575;QD=19.17;ReadPosRankSum=3.264;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:4,201:208:99:3987,453,0 chrXIV 365824 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.408;DP=203;Dels=0.00;FS=16.378;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;MQRankSum=-0.047;QD=19.60;ReadPosRankSum=3.374;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:4,199:203:99:3978,435,0 chrXIV 365847 . G A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.79;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3682,405,0 chrXIV 366158 . G T 6640.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=22.9470;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.63;SB=-2.920e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:6640,732,0 chrXIV 366518 . A G 4015.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.3361;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4015,465,0 chrXIV 367502 . A G 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=134;Dels=0.00;FS=8.553;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.248;QD=21.68;ReadPosRankSum=2.339;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2938,342,0 chrXIV 367644 . G A 3593.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.39;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3593,408,0 chrXIV 367843 . G A 3350.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.48;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3350,369,0 chrXIV 368045 . C T 4984.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.6537;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.85;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4984,555,0 chrXIV 368183 . C T 3979.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.2935;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.39;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3979,438,0 chrXIV 368391 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3133,333,0 chrXIV 368877 . A G 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.283;QD=20.77;ReadPosRankSum=1.709;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3232,378,0 chrXIV 368957 . C T 2356 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.85;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2389,267,0 chrXIV 368967 . A G 2440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=3.319;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=0.331;QD=18.48;ReadPosRankSum=1.706;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2473,285,0 chrXIV 369029 . T A 2959 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.29;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2992,327,0 chrXIV 369143 . A G 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.213;QD=21.74;ReadPosRankSum=1.652;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2859,336,0 chrXIV 369343 . C T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=24.13;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3354,357,0 chrXIV 369363 . C T 3031 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.79;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3064,336,0 chrXIV 369447 . A T 3034 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.31;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3067,327,0 chrXIV 369591 . G A 3296.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6875;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.05;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3296,372,0 chrXIV 369651 . T C 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=145;Dels=0.00;FS=7.707;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.517;QD=21.12;ReadPosRankSum=2.094;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3095,357,0 chrXIV 369711 . A T 4063.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.83;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4063,441,0 chrXIV 370196 . T G 4073.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.5527;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.610;QD=22.88;ReadPosRankSum=1.693;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:4073,456,0 chrXIV 370269 . G C 4346.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.75;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4346,492,0 chrXIV 370996 . A T 4040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=163;Dels=0.00;FS=2.957;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.372;QD=24.79;ReadPosRankSum=2.374;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:4040,441,0 chrXIV 371516 . T C 4342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=191;Dels=0.00;FS=3.545;HaplotypeScore=10.5210;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.495;QD=22.73;ReadPosRankSum=1.677;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4342,492,0 chrXIV 371658 . T C 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=167;Dels=0.00;FS=3.839;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.379;QD=18.40;ReadPosRankSum=1.711;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3105,354,0 chrXIV 371753 . A T 2772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=119;Dels=0.00;FS=9.836;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.180;QD=23.29;ReadPosRankSum=2.889;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2805,303,0 chrXIV 372155 . C T 3990.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=14.3879;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.11;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3990,435,0 chrXIV 372259 . C T 3086 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.41;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3119,336,0 chrXIV 372616 . G A 3930.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.4898;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.59;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3930,435,0 chrXIV 372882 . C G 4464.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.7525;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.20;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4464,510,0 chrXIV 372919 . T A 5797.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=9.6264;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.64;SB=-3.261e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5797,636,0 chrXIV 373080 . T C 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.655;DP=174;Dels=0.00;FS=2.285;HaplotypeScore=13.0583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.000;QD=19.01;ReadPosRankSum=2.679;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:3,169:174:99:3308,375,0 chrXIV 373134 . A G 3846.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.2417;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.85;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3846,429,0 chrXIV 373375 . G A 6123.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=8.2617;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.69;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:6123,655,0 chrXIV 373632 . T A 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.777;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=172.7390;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=1.534;QD=0.07;ReadPosRankSum=-5.498;SB=-9.976e+01 GT:AD:DP:GQ:PL 1/1:181,13:194:6:45,6,0 chrXIV 373766 . C A 6609.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=13.9227;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.12;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,271:274:99:6609,718,0 chrXIV 373799 . A G 7101.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.57;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,289:289:99:7101,810,0 chrXIV 373872 . C G 4801.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.9564;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=23.65;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,199:203:99:4801,537,0 chrXIV 373925 . A G 4096.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=0.106;QD=20.79;ReadPosRankSum=2.325;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4096,468,0 chrXIV 373946 . T C 4606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=222;Dels=0.00;FS=5.540;HaplotypeScore=6.8695;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=0.858;QD=20.75;ReadPosRankSum=1.638;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:4606,510,0 chrXIV 374054 . G A 4090.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.8197;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.45;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4090,447,0 chrXIV 374078 . G C 3085 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.99;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3118,345,0 chrXIV 374157 . T G 2880 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.98;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2913,324,0 chrXIV 374262 . C T 2889 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.3470;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.93;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2922,315,0 chrXIV 374306 . A G 3279.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.16;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3279,372,0 chrXIV 374659 . C T 3220.05 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.64;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3253,369,0 chrXIV 374839 . A G 3418.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.77;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3418,396,0 chrXIV 375848 . T C 4115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=3.745;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.078;QD=22.73;ReadPosRankSum=1.694;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:4115,456,0 chrXIV 375878 . A G 3716.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.091;DP=180;Dels=0.00;FS=8.111;HaplotypeScore=7.5893;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.034;QD=20.64;ReadPosRankSum=3.372;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:4,176:180:99:3716,411,0 chrXIV 376070 . G A 2359 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.50;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2392,270,0 chrXIV 376313 . C T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.97;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3376,372,0 chrXIV 376490 . A G 3701.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.85;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3701,429,0 chrXIV 376664 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.67;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3304,360,0 chrXIV 377102 . C T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.01;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3796,426,0 chrXIV 377219 . T C 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.835;QD=21.55;ReadPosRankSum=1.669;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3578,399,0 chrXIV 377513 . A G 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=153;Dels=0.00;FS=3.039;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.891;QD=24.44;ReadPosRankSum=2.417;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3739,417,0 chrXIV 377864 . T C 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.443;QD=21.37;ReadPosRankSum=1.712;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3718,426,0 chrXIV 377887 . G T 4155.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.87;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4155,450,0 chrXIV 377912 . T C 4283.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=0.811;QD=21.10;ReadPosRankSum=1.681;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:1,202:203:99:4283,480,0 chrXIV 377943 . G A 4490.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.69;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4490,486,0 chrXIV 378863 . A G 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.095;QD=20.87;ReadPosRankSum=1.711;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3443,387,0 chrXIV 379352 . A G 2356 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2389,267,0 chrXIV 379436 . A T 1626 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.02;FS=0.000;HaplotypeScore=13.1277;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.26;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1659,183,0 chrXIV 379700 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3488,372,0 chrXIV 380458 . A T 4534.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.6556;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.90;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4534,492,0 chrXIV 380470 . A G 4210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.3628;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-1.404;QD=19.67;ReadPosRankSum=1.716;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:4210,474,0 chrXIV 380699 . G T 3143 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.95;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3176,354,0 chrXIV 380871 . C T 2302 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.37;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2335,261,0 chrXIV 380883 . T C 2190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=110;Dels=0.00;FS=3.014;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-1.107;QD=19.91;ReadPosRankSum=2.405;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2223,249,0 chrXIV 380926 . T C 1679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.727;DP=107;Dels=0.00;FS=5.816;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.896;QD=15.69;ReadPosRankSum=2.897;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:3,104:107:99:1712,192,0 chrXIV 380998 . C T 2363 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=17.9369;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.12;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2396,264,0 chrXIV 381068 . T C 2401 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=15.6613;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.35;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2434,279,0 chrXIV 381101 . G A 2522 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.6877;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.19;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2555,291,0 chrXIV 381181 . A T 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=148;Dels=0.00;FS=2.967;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.446;QD=24.37;ReadPosRankSum=2.416;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3607,390,0 chrXIV 381267 . C A 2545 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.5565;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.13;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,111:115:99:2578,282,0 chrXIV 381758 . A G 2861 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2894,330,0 chrXIV 381889 . G A 2872 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2905,312,0 chrXIV 382139 . C T 2475 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.50;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2508,285,0 chrXIV 382260 . T C 1407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.767;DP=91;Dels=0.00;FS=9.625;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.523;QD=15.46;ReadPosRankSum=2.923;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:3,88:91:99:1440,168,0 chrXIV 382331 . G A 1844 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.04;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=16.92;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1877,210,0 chrXIV 382332 . A T 1864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=110;Dels=0.00;FS=13.289;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.870;QD=16.95;ReadPosRankSum=2.579;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:4,106:110:99:1897,210,0 chrXIV 382352 . G A 1993 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=19.16;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2026,234,0 chrXIV 382693 . T A 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.682;QD=22.50;ReadPosRankSum=1.653;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3025,345,0 chrXIV 382763 . A G 3614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=159;Dels=0.00;FS=3.819;HaplotypeScore=10.5051;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.275;QD=22.73;ReadPosRankSum=1.710;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3614,417,0 chrXIV 382904 . C G 4133.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.22;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4133,477,0 chrXIV 383402 . G A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.2855;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.76;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3321,378,0 chrXIV 383456 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.0428;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.32;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3516,399,0 chrXIV 383575 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3450,375,0 chrXIV 383680 . A G 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.556;QD=20.40;ReadPosRankSum=1.605;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2277,261,0 chrXIV 383709 . A T 2516 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.29;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2549,285,0 chrXIV 383790 . C T 1892 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.75;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1925,210,0 chrXIV 383863 . G C 1883 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.69;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1916,219,0 chrXIV 384020 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.20;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3235,351,0 chrXIV 384102 . C T 4438.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.12;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4438,483,0 chrXIV 384238 . T C 3892.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=184;Dels=0.00;FS=3.029;HaplotypeScore=13.6444;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.662;QD=21.15;ReadPosRankSum=2.410;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:3892,447,0 chrXIV 385111 . A G 3323.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3323,363,0 chrXIV 385472 . C T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3271,357,0 chrXIV 385521 . T A 3418.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3418,366,0 chrXIV 385702 . A T 3327.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3327,372,0 chrXIV 386229 . G T 2800 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.54;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2833,318,0 chrXIV 386247 . C T 2576 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.82;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2609,294,0 chrXIV 386488 . C T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.3884;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.04;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3456,387,0 chrXIV 386641 . G A 3092 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3125,339,0 chrXIV 386898 . A C 2305 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2338,264,0 chrXIV 387050 . C A 1856 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.9847;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.85;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1889,216,0 chrXIV 387197 . G A 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.083;DP=97;Dels=0.00;FS=5.673;HaplotypeScore=7.6709;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.974;QD=23.13;ReadPosRankSum=-0.433;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2277,229,0 chrXIV 387361 . A G 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.2704;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.295;QD=22.91;ReadPosRankSum=1.670;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2622,294,0 chrXIV 387540 . T C 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.439;QD=23.11;ReadPosRankSum=1.683;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3282,366,0 chrXIV 387811 . G A 3544.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.79;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3544,393,0 chrXIV 388136 . C T 2536 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2569,279,0 chrXIV 388819 . T C 2387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.635;QD=23.40;ReadPosRankSum=1.698;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2420,270,0 chrXIV 388979 . C A 2297 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.30;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2330,258,0 chrXIV 389017 . T C 2139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=92;Dels=0.00;FS=3.156;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.542;QD=23.25;ReadPosRankSum=1.694;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2172,246,0 chrXIV 389245 . T G 3426.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.9350;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=24.65;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3426,378,0 chrXIV 389281 . T G 2507 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=17.78;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2540,285,0 chrXIV 389282 . A G 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=138;Dels=0.00;FS=11.892;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-0.365;QD=17.93;ReadPosRankSum=2.876;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:2507,279,0 chrXIV 389356 . C T 3463.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.3441;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.49;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3463,381,0 chrXIV 389778 . C T 1601 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.35;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1634,180,0 chrXIV 389790 . C T 1256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.234;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=0.843;QD=16.75;ReadPosRankSum=1.311;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1289,144,0 chrXIV 389791 . A C 1206 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=16.30;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1239,141,0 chrXIV 389873 . A T 2149 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.62;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2182,240,0 chrXIV 389903 . G A 2760 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.79;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2793,300,0 chrXIV 390425 . G A 3717.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.2139;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.39;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3717,423,0 chrXIV 390446 . C T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.69;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3796,435,0 chrXIV 390845 . G C 5394.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=13.6897;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.84;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5394,627,0 chrXIV 390932 . T C 4927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=223;Dels=0.00;FS=4.345;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.691;QD=22.09;ReadPosRankSum=1.701;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:4927,546,0 chrXIV 391235 . G A 5605.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=7.2449;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.84;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:5605,609,0 chrXIV 391246 . A G 4959.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=258;Dels=0.00;FS=4.509;HaplotypeScore=14.1626;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.991;QD=19.22;ReadPosRankSum=1.705;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:1,256:258:99:4959,561,0 chrXIV 391568 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=17.7400;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=12.02;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:2809,318,0 chrXIV 391590 . T C 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=222;Dels=0.00;FS=9.989;HaplotypeScore=9.9593;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=0.039;QD=13.75;ReadPosRankSum=2.115;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:2,218:222:99:3085,348,0 chrXIV 391752 . A G 3201 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.20;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3234,366,0 chrXIV 393110 . C T 4007.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.2384;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4007,438,0 chrXIV 393151 . A G 4030.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=188;Dels=0.00;FS=2.892;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.856;QD=21.44;ReadPosRankSum=2.358;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4030,453,0 chrXIV 393703 . G A 5721.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=20.9666;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.45;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5721,639,0 chrXIV 394167 . A G 5983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.352;DP=351;Dels=0.00;FS=8.200;HaplotypeScore=13.5380;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;MQRankSum=-0.092;QD=17.05;ReadPosRankSum=3.392;SB=-3.694e+03 GT:AD:DP:GQ:PL 1/1:4,347:351:99:5983,678,0 chrXIV 395338 . T C 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.174;QD=20.49;ReadPosRankSum=1.709;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3086,360,0 chrXIV 395383 . C A 4109.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.75;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4109,441,0 chrXIV 396007 . G A 4079.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.8249;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.70;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4079,468,0 chrXIV 396544 . C T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.8362;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=19.92;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3306,369,0 chrXIV 396569 . T C 3593.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=8.2654;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.64;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3593,396,0 chrXIV 396967 . T C 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.917;QD=21.00;ReadPosRankSum=1.619;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,152:157:99:3297,387,0 chrXIV 397399 . A G 2784 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.20;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2817,321,0 chrXIV 397432 . C T 2769 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.51;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2802,315,0 chrXIV 397475 . C T 2548 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.4974;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.16;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2581,282,0 chrXIV 397657 . C T 2781 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.90;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2814,315,0 chrXIV 397680 . C T 2517 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.80;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2550,276,0 chrXIV 397733 . T G 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=3.010;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=0.330;QD=19.96;ReadPosRankSum=1.650;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2548,300,0 chrXIV 397752 . T C 3030 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.28;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3063,342,0 chrXIV 397790 . T C 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=139;Dels=0.00;FS=3.374;HaplotypeScore=116.7918;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.569;QD=19.66;ReadPosRankSum=1.682;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2766,306,0 chrXIV 397986 . T C 3519.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.86;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3519,396,0 chrXIV 397996 . T G 3203 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.53;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3236,378,0 chrXIV 398211 . A G 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=134;Dels=0.00;FS=5.278;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-0.447;QD=21.34;ReadPosRankSum=2.887;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:3,130:134:99:2893,321,0 chrXIV 398461 . G A 1391 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1424,156,0 chrXIV 398753 . C T 2314 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.71;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2347,249,0 chrXIV 398822 . A G 2343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=108;Dels=0.00;FS=2.997;HaplotypeScore=9.7773;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.194;QD=21.69;ReadPosRankSum=2.404;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2376,270,0 chrXIV 398966 . A G 2314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.274;DP=106;Dels=0.00;FS=12.636;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.141;QD=21.83;ReadPosRankSum=3.374;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:4,102:106:99:2347,267,0 chrXIV 399462 . A G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.3678;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.14;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3349,393,0 chrXIV 400449 . T C 5405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=231;Dels=0.00;FS=2.811;HaplotypeScore=11.2730;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.795;QD=23.40;ReadPosRankSum=2.396;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:2,228:231:99:5405,603,0 chrXIV 400727 . G A 2783 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=17.84;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2816,312,0 chrXIV 400773 . A G 1633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=106;Dels=0.00;FS=3.027;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;MQRankSum=-1.753;QD=15.41;ReadPosRankSum=2.334;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1666,186,0 chrXIV 400777 . G A 1505 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.98;MQ0=0;QD=14.61;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1538,171,0 chrXIV 400788 . G T 1281 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.15;MQ0=0;QD=14.08;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1314,147,0 chrXIV 400794 . C T 1202 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=13.36;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1235,132,0 chrXIV 400797 . T C 1169 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.7409;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;MQRankSum=-1.695;QD=12.57;ReadPosRankSum=1.695;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1202,138,0 chrXIV 400813 . G A 1266 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.9683;MLEAC=2;MLEAF=1.00;MQ=35.16;MQ0=0;QD=12.66;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1299,144,0 chrXIV 400821 . C T 1257 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=0;QD=11.53;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1290,147,0 chrXIV 400849 . T C 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;MQRankSum=-0.411;QD=14.79;ReadPosRankSum=1.703;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1778,198,0 chrXIV 400901 . G A 3314.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.52;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3314,378,0 chrXIV 400998 . T C 1937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;MQRankSum=-1.565;QD=23.06;ReadPosRankSum=1.690;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1970,222,0 chrXIV 401015 . T A 2075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=3.303;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;MQRankSum=-1.582;QD=22.55;ReadPosRankSum=1.657;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2108,237,0 chrXIV 401240 . C T 3613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=1.425;QD=22.72;ReadPosRankSum=1.074;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3613,390,0 chrXIV 401251 . A T 3567.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.88;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3567,384,0 chrXIV 401617 . A G 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=129;Dels=0.00;FS=6.767;HaplotypeScore=11.2280;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.162;QD=23.04;ReadPosRankSum=2.373;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:3005,336,0 chrXIV 403430 . G A 3466.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=22.80;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3466,378,0 chrXIV 403632 . G A 2703 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.3454;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.62;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,120:125:99:2736,300,0 chrXIV 404051 . A G 3651.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.2615;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.82;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3651,420,0 chrXIV 404479 . C T 6138.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=5.8084;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.25;SB=-3.202e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:6138,678,0 chrXIV 404663 . A T 5459.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=12.8427;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.28;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:5459,600,0 chrXIV 405841 . T C 2440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.470;QD=20.68;ReadPosRankSum=1.703;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2473,282,0 chrXIV 406133 . A G 2989 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.66;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3022,342,0 chrXIV 406709 . G A 3182 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.5474;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.10;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3215,369,0 chrXIV 407152 . T G 3462.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.71;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3462,399,0 chrXIV 407251 . A G 4589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=199;Dels=0.00;FS=7.418;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.598;QD=23.06;ReadPosRankSum=2.425;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4589,519,0 chrXIV 407285 . A G 4460.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.35;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4460,495,0 chrXIV 409114 . G A 4222.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=21.1113;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.46;SB=-2.245e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4222,462,0 chrXIV 409622 . A G 4219.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.2222;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.81;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4219,495,0 chrXIV 410443 . A G 5070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.698;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=6.2451;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.368;QD=22.74;ReadPosRankSum=-0.165;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:1,220:223:99:5070,571,0 chrXIV 410616 . T C 5554.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=279;Dels=0.00;FS=11.118;HaplotypeScore=17.7857;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.137;QD=19.91;ReadPosRankSum=2.924;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:3,275:279:99:5554,645,0 chrXIV 410668 . A G 4948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=247;Dels=0.00;FS=2.975;HaplotypeScore=17.9988;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.458;QD=20.03;ReadPosRankSum=2.349;SB=-2.839e+03 GT:AD:DP:GQ:PL 1/1:2,243:247:99:4948,552,0 chrXIV 410737 . A G 6222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.094;DP=297;Dels=0.00;FS=10.730;HaplotypeScore=23.9224;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=0.929;QD=20.95;ReadPosRankSum=4.137;SB=-2.972e+03 GT:AD:DP:GQ:PL 1/1:6,291:297:99:6222,726,0 chrXIV 410941 . A G 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.595;DP=210;Dels=0.00;FS=11.396;HaplotypeScore=20.3329;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.970;QD=20.80;ReadPosRankSum=3.783;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:5,203:210:99:4367,492,0 chrXIV 411007 . G T 4448.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.80;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4448,498,0 chrXIV 411040 . G A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.25;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3651,411,0 chrXIV 411667 . T A 3561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=146;Dels=0.00;FS=9.664;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.416;QD=24.39;ReadPosRankSum=2.365;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3561,390,0 chrXIV 411928 . G A 3738.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.86;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3738,414,0 chrXIV 411943 . G C 3433.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.8163;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=19.07;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3433,393,0 chrXIV 412116 . T C 4585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=219;Dels=0.00;FS=10.822;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=2.207;QD=20.94;ReadPosRankSum=2.904;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:3,216:219:99:4585,522,0 chrXIV 412258 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=19.13;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2903,312,0 chrXIV 412260 . A G 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.844;DP=148;Dels=0.00;FS=2.824;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=0.360;QD=18.60;ReadPosRankSum=2.416;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:2786,288,0 chrXIV 412273 . G A 2898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.322;DP=153;Dels=0.00;FS=3.965;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.661;QD=18.94;ReadPosRankSum=0.957;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2931,293,0 chrXIV 412313 . C T 2809 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.2263;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=18.36;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2842,321,0 chrXIV 412369 . A T 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.7940;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;MQRankSum=-1.786;QD=19.18;ReadPosRankSum=2.407;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2277,261,0 chrXIV 412378 . T A 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=6.274;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=31.66;MQ0=0;MQRankSum=-0.163;QD=20.21;ReadPosRankSum=1.699;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2175,237,0 chrXIV 412400 . C T 1595 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.390;DP=91;Dels=0.00;FS=5.277;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.60;MQ0=0;MQRankSum=1.161;QD=17.53;ReadPosRankSum=1.085;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1628,177,0 chrXIV 412403 . T C 1480 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.987;DP=90;Dels=0.00;FS=11.024;HaplotypeScore=2.9246;MLEAC=2;MLEAF=1.00;MQ=34.68;MQ0=0;MQRankSum=-1.635;QD=16.44;ReadPosRankSum=3.240;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:4,86:90:99:1513,168,0 chrXIV 412406 . C T 1467 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.02;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=35.12;MQ0=0;QD=16.30;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1500,162,0 chrXIV 412417 . G A 1707 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;QD=17.60;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1740,192,0 chrXIV 412526 . A G 1529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=90;Dels=0.02;FS=8.340;HaplotypeScore=24.1887;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;MQRankSum=0.434;QD=16.99;ReadPosRankSum=2.338;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1562,177,0 chrXIV 412555 . T A 966 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;QD=13.80;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:999,111,0 chrXIV 412559 . T C 827 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.54;MQ0=0;QD=11.81;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:860,99,0 chrXIV 412581 . G A 846 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=61.3540;MLEAC=2;MLEAF=1.00;MQ=29.28;MQ0=0;QD=12.63;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:879,105,0 chrXIV 412587 . T A 955 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=63.3195;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=0;QD=14.04;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:988,114,0 chrXIV 412609 . G T 1063 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;QD=12.81;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1096,123,0 chrXIV 412689 . G T 2896 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.2756;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.77;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2929,321,0 chrXIV 412735 . T G 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;MQRankSum=-1.469;QD=18.84;ReadPosRankSum=1.684;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2784,315,0 chrXIV 412736 . C T 2459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=-1.251;QD=16.61;ReadPosRankSum=0.144;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,143:148:99:2492,285,0 chrXIV 412804 . A C 2715 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.0399;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=19.53;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2748,312,0 chrXIV 413068 . C T 3514.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3514,387,0 chrXIV 413305 . C G 1406 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.80;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1439,162,0 chrXIV 413686 . G T 2784 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.86;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2817,306,0 chrXIV 414010 . T C 3692.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.0348;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.51;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3692,411,0 chrXIV 414025 . G A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.2449;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.74;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3336,369,0 chrXIV 415047 . C T 36.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.890;DP=32;Dels=0.00;FS=15.055;HaplotypeScore=17.5014;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=2.335;QD=1.16;ReadPosRankSum=2.261;SB=-8.197e+01 GT:AD:DP:GQ:PL 1/1:4,25:32:9:69,9,0 chrXIV 415086 . T C 36.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.708;DP=24;Dels=0.00;FS=4.310;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=32.59;MQ0=0;MQRankSum=-0.769;QD=1.54;ReadPosRankSum=-0.646;SB=-4.397e+01 GT:AD:DP:GQ:PL 1/1:12,12:24:9:69,9,0 chrXIV 415560 . T C 2726 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.53;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2759,321,0 chrXIV 415595 . G A 2411 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.78;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2444,276,0 chrXIV 415654 . A T 2124 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.34;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2157,231,0 chrXIV 415788 . A G 1770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=4.496;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;MQRankSum=-0.437;QD=16.54;ReadPosRankSum=1.700;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1803,201,0 chrXIV 415793 . A T 1825 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=17.22;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1858,198,0 chrXIV 415844 . A G 1365 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=13.51;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1398,159,0 chrXIV 415849 . G A 1379 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.6475;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;QD=13.39;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,100:103:99:1412,153,0 chrXIV 415877 . G A 1729 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=17.29;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1762,198,0 chrXIV 416104 . C T 4708.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.0893;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=24.27;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4708,522,0 chrXIV 416164 . T C 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=149;Dels=0.00;FS=5.209;HaplotypeScore=6.8184;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.000;QD=21.30;ReadPosRankSum=1.708;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3206,363,0 chrXIV 416179 . T C 2629 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.38;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2662,315,0 chrXIV 416620 . T G 3212.98 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.42;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3246,369,0 chrXIV 416832 . G T 2214 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.13;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2247,246,0 chrXIV 416854 . A G 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=5.673;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.119;QD=22.71;ReadPosRankSum=1.696;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2213,249,0 chrXIV 416991 . G A 2980 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.75;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3013,342,0 chrXIV 417156 . T A 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.01;FS=3.094;HaplotypeScore=6.6664;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.121;QD=22.38;ReadPosRankSum=1.666;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3536,378,0 chrXIV 417400 . T A 1814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=78;Dels=0.00;FS=5.699;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-1.155;QD=23.26;ReadPosRankSum=1.688;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1847,198,0 chrXIV 417421 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=20.49;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1426,156,0 chrXIV 417439 . G A 1443 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.22;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1476,159,0 chrXIV 417499 . C T 2165 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.65;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2198,240,0 chrXIV 417610 . G C 1664 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.49;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1697,192,0 chrXIV 417659 . G A 2556 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.61;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2589,300,0 chrXIV 417758 . C T 2974 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3007,327,0 chrXIV 418066 . A G 2446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.108;DP=135;Dels=0.00;FS=5.274;HaplotypeScore=6.9747;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.253;QD=18.12;ReadPosRankSum=3.393;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:4,131:135:99:2479,285,0 chrXIV 418123 . T C 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=3.933;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.774;QD=19.62;ReadPosRankSum=1.634;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2800,315,0 chrXIV 418195 . C T 3270.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.2919;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.87;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3270,360,0 chrXIV 418291 . A G 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=138;Dels=0.00;FS=13.940;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=0.102;QD=19.51;ReadPosRankSum=2.949;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:2726,309,0 chrXIV 418300 . T C 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=0.037;QD=19.85;ReadPosRankSum=1.708;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2852,324,0 chrXIV 418312 . C A 2945 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=19.90;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2978,318,0 chrXIV 418324 . A G 2532 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=16.99;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2565,288,0 chrXIV 418437 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.05;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3076,333,0 chrXIV 418511 . T C 4765.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=200;Dels=0.00;FS=6.132;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=0.771;QD=23.83;ReadPosRankSum=2.425;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:2,194:200:99:4765,528,0 chrXIV 418576 . T A 3988.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=23.88;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3988,438,0 chrXIV 418723 . T A 2769 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=21.80;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2802,318,0 chrXIV 418738 . G A 2570 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=22.74;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2603,291,0 chrXIV 418767 . G A 1592 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2506;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=18.95;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1625,180,0 chrXIV 418776 . G A 1823 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=18.99;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1856,204,0 chrXIV 419029 . T C 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-0.286;QD=21.53;ReadPosRankSum=1.672;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2531,285,0 chrXIV 419038 . C T 2502 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.03;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2535,279,0 chrXIV 419074 . A G 2467 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.45;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2500,279,0 chrXIV 419161 . C T 2575 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.46;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2608,282,0 chrXIV 419170 . T C 2700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-1.552;QD=19.85;ReadPosRankSum=1.706;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2733,300,0 chrXIV 419205 . G A 2667 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=18.65;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2700,294,0 chrXIV 419224 . A G 2753 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=18.11;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2786,324,0 chrXIV 419323 . G A 3429.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.49;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3429,378,0 chrXIV 419479 . G A 2272 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.42;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2305,261,0 chrXIV 420029 . C T 3062 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.30;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3095,342,0 chrXIV 420063 . T C 2781 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.6989;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.73;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2814,330,0 chrXIV 420094 . C T 2415 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.18;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2448,270,0 chrXIV 420526 . A C 2850 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.98;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2883,333,0 chrXIV 420782 . C T 2604 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.8966;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.52;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2637,297,0 chrXIV 420944 . T C 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=3.495;HaplotypeScore=15.9134;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.169;QD=23.54;ReadPosRankSum=1.704;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2975,330,0 chrXIV 421253 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3153,360,0 chrXIV 421420 . C T 4368.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.95;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,195:199:99:4368,510,0 chrXIV 421511 . G A 5145.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5145,573,0 chrXIV 421631 . C T 4706.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=21.0181;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.29;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:4706,531,0 chrXIV 421772 . A G 4128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.557;QD=20.85;ReadPosRankSum=1.697;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4128,465,0 chrXIV 422123 . C T 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.320;DP=159;Dels=0.00;FS=3.571;HaplotypeScore=13.5010;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.379;QD=21.74;ReadPosRankSum=1.004;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3457,358,0 chrXIV 422665 . T C 3084 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.1666;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.84;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3117,351,0 chrXIV 423011 . G A 4113.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4113,453,0 chrXIV 423143 . A G 3540.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.900;QD=22.84;ReadPosRankSum=1.710;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3540,405,0 chrXIV 423266 . C T 2916 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2949,318,0 chrXIV 423311 . A G 2852 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2885,324,0 chrXIV 423792 . C T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.4376;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.27;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3942,438,0 chrXIV 423923 . A C 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.536;QD=21.00;ReadPosRankSum=1.645;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3360,375,0 chrXIV 424396 . T G 3407.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.12;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3407,390,0 chrXIV 424418 . T C 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=3.515;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.190;QD=21.15;ReadPosRankSum=1.620;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3279,381,0 chrXIV 425075 . C T 5379.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=12.9264;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.60;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5379,582,0 chrXIV 425258 . A C 4412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;DP=232;Dels=0.00;FS=2.649;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.263;QD=19.02;ReadPosRankSum=2.364;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:2,229:232:99:4412,492,0 chrXIV 425369 . A G 5813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=254;Dels=0.00;FS=6.391;HaplotypeScore=17.7155;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.482;QD=22.89;ReadPosRankSum=2.420;SB=-3.108e+03 GT:AD:DP:GQ:PL 1/1:2,250:254:99:5813,651,0 chrXIV 425456 . A G 4278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=183;Dels=0.00;FS=14.784;HaplotypeScore=8.7492;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.663;QD=23.38;ReadPosRankSum=3.336;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:4,179:183:99:4278,477,0 chrXIV 425480 . A G 4093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=196;Dels=0.00;FS=3.869;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.915;QD=20.88;ReadPosRankSum=1.679;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4093,471,0 chrXIV 425507 . C T 4680.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=7.0338;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.62;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4680,510,0 chrXIV 425816 . G A 6225.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:6225,676,0 chrXIV 425890 . A G 6430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=289;Dels=0.00;FS=5.826;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=1.567;QD=22.25;ReadPosRankSum=2.926;SB=-3.245e+03 GT:AD:DP:GQ:PL 1/1:3,283:289:99:6430,717,0 chrXIV 426089 . G A 4729.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.6115;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.41;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:4729,522,0 chrXIV 426155 . A G 3992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=200;Dels=0.00;FS=6.053;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=0.251;QD=19.96;ReadPosRankSum=2.945;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:3992,447,0 chrXIV 426161 . G A 3745.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=18.82;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3745,432,0 chrXIV 426226 . A T 3982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=190;Dels=0.00;FS=6.183;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=0.864;QD=20.96;ReadPosRankSum=2.411;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:3982,447,0 chrXIV 426290 . A G 4377.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.2746;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.28;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4377,486,0 chrXIV 426629 . A G 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-1.590;QD=21.55;ReadPosRankSum=1.704;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2662,300,0 chrXIV 426647 . G A 2662 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=20.80;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2695,300,0 chrXIV 426721 . G T 2760 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=22.08;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2793,303,0 chrXIV 426745 . C G 2261 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=19.16;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2294,258,0 chrXIV 426750 . A G 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=-0.160;QD=19.97;ReadPosRankSum=1.674;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2409,270,0 chrXIV 426977 . C A 859 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=21.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:99:892,99,0 chrXIV 427020 . A T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=1.63;SB=-2.780e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:6:54,6,0 chrXIV 427042 . C G 1465 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.4613;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=20.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1498,171,0 chrXIV 427089 . A T 3147 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=24.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3180,348,0 chrXIV 427117 . T C 3195 filter AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.7698;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=22.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3228,366,0 chrXIV 427278 . A G 3306.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=18.57;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3306,372,0 chrXIV 427279 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.943;QD=18.63;ReadPosRankSum=1.655;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3353,378,0 chrXIV 427333 . A G 3833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=19.2575;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=0.685;QD=17.58;ReadPosRankSum=1.684;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:1,214:218:99:3833,435,0 chrXIV 427380 . G A 4421.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.2330;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.48;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4421,504,0 chrXIV 427388 . C T 4553.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.97;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,238:240:99:4553,501,0 chrXIV 427451 . A G 4642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=246;Dels=0.00;FS=9.797;HaplotypeScore=23.8535;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-1.258;QD=18.87;ReadPosRankSum=2.359;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:2,242:246:99:4642,549,0 chrXIV 427601 . T G 6678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=12.6772;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=0.562;QD=21.75;ReadPosRankSum=1.062;SB=-3.519e+03 GT:AD:DP:GQ:PL 1/1:1,304:307:99:6678,753,0 chrXIV 427654 . C T 6171.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=13.5769;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.28;SB=-3.054e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:6171,661,0 chrXIV 427917 . C T 5765.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.30;SB=-3.249e+03 GT:AD:DP:GQ:PL 1/1:0,284:284:99:5765,666,0 chrXIV 427926 . T C 5739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=292;Dels=0.00;FS=11.220;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.385;QD=19.65;ReadPosRankSum=2.894;SB=-3.100e+03 GT:AD:DP:GQ:PL 1/1:3,289:292:99:5739,660,0 chrXIV 427944 . T C 5757.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=309;Dels=0.00;FS=11.139;HaplotypeScore=12.5902;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=0.380;QD=18.63;ReadPosRankSum=2.958;SB=-3.274e+03 GT:AD:DP:GQ:PL 1/1:3,306:309:99:5757,660,0 chrXIV 428064 . T C 7005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=330;Dels=0.00;FS=6.526;HaplotypeScore=18.7445;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.393;QD=21.23;ReadPosRankSum=2.427;SB=-3.793e+03 GT:AD:DP:GQ:PL 1/1:2,326:330:99:7005,813,0 chrXIV 428264 . A G 5602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=254;Dels=0.00;FS=5.464;HaplotypeScore=10.4539;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=-0.661;QD=22.06;ReadPosRankSum=2.956;SB=-2.588e+03 GT:AD:DP:GQ:PL 1/1:3,249:254:99:5602,624,0 chrXIV 428364 . C T 5608.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5608,615,0 chrXIV 428450 . T G 6258.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=18.7585;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.84;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6258,705,0 chrXIV 428493 . T C 5045.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=19.1483;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=22.03;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5045,564,0 chrXIV 428659 . C T 4881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=266;Dels=0.00;FS=2.561;HaplotypeScore=18.6915;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-0.651;QD=18.35;ReadPosRankSum=2.284;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:3,261:266:99:4881,537,0 chrXIV 428693 . C T 4865.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=19.78;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,243:246:99:4865,552,0 chrXIV 428711 . C T 3996.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=18.94;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:3996,453,0 chrXIV 428712 . G A 4062.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=19.16;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4062,459,0 chrXIV 428763 . C T 2529 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.0621;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=17.44;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2562,294,0 chrXIV 428844 . C T 3154 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.5921;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=21.03;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3187,357,0 chrXIV 428861 . T C 3328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=4.184;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=0.137;QD=21.89;ReadPosRankSum=1.709;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3328,375,0 chrXIV 428883 . T C 3394.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.70;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3394,384,0 chrXIV 428948 . G A 3320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=0.953;QD=20.75;ReadPosRankSum=-0.281;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3320,357,0 chrXIV 428970 . C T 2456 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.4574;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=17.06;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2489,282,0 chrXIV 428978 . A G 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=150;Dels=0.00;FS=8.003;HaplotypeScore=8.9871;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;MQRankSum=1.581;QD=17.21;ReadPosRankSum=2.368;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:2615,297,0 chrXIV 429024 . T C 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=160;Dels=0.00;FS=2.728;HaplotypeScore=7.0367;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=-0.147;QD=16.31;ReadPosRankSum=2.388;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:2642,306,0 chrXIV 429042 . T C 2760 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=18.40;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2793,312,0 chrXIV 429156 . T C 3736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=175;Dels=0.00;FS=3.007;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.713;QD=21.35;ReadPosRankSum=2.323;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:3736,423,0 chrXIV 429408 . C T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=17.5817;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.88;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3424,384,0 chrXIV 429773 . T G 215.01 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:27:248,27,0 chrXIV 429928 . T A 1660 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.604;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.544;QD=24.06;ReadPosRankSum=2.810;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,66:69:99:1693,183,0 chrXIV 429959 . T A 1532 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=23.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1565,171,0 chrXIV 430032 . T C 1996 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=18.48;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2029,228,0 chrXIV 430147 . A G 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=215;Dels=0.00;FS=4.812;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=-1.555;QD=16.87;ReadPosRankSum=1.700;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:3626,420,0 chrXIV 430152 . C T 3861.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=17.01;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:3861,429,0 chrXIV 430159 . G A 3438.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=15.77;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:3438,399,0 chrXIV 430224 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.13;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3076,333,0 chrXIV 430407 . C T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.92;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3461,375,0 chrXIV 430495 . A G 2254 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.49;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2287,270,0 chrXIV 430749 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.35;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3336,372,0 chrXIV 430923 . T A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.29;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3510,399,0 chrXIV 430924 . C T 3687.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.15;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3687,399,0 chrXIV 431004 . G A 4005.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.89;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4005,435,0 chrXIV 431058 . A G 3776.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=1.5650;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=18.97;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3776,420,0 chrXIV 431063 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.736;DP=203;Dels=0.00;FS=7.092;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=-1.579;QD=17.53;ReadPosRankSum=0.575;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:3559,395,0 chrXIV 431072 . A G 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.4776;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.783;QD=18.68;ReadPosRankSum=1.714;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:1,196:199:99:3717,414,0 chrXIV 431281 . G C 3801.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.1809;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.49;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3801,432,0 chrXIV 432225 . T C 4395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=186;Dels=0.00;FS=6.586;HaplotypeScore=11.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.664;QD=23.63;ReadPosRankSum=2.423;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:2,181:186:99:4395,486,0 chrXIV 432400 . A T 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.065;QD=25.37;ReadPosRankSum=1.646;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:4084,441,0 chrXIV 432729 . C T 3615.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.6787;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=22.45;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3615,417,0 chrXIV 432870 . T A 3484.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.70;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3484,384,0 chrXIV 433148 . G A 3149 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3182,351,0 chrXIV 433269 . T C 3148 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=156;Dels=0.00;FS=2.967;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-1.205;QD=20.18;ReadPosRankSum=2.418;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3181,372,0 chrXIV 433271 . G A 3553.01 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=22.78;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3553,378,0 chrXIV 433278 . T C 3205.99 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.0147;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=20.95;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3239,372,0 chrXIV 433374 . T C 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=3.274;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-1.687;QD=22.91;ReadPosRankSum=1.664;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3505,405,0 chrXIV 433506 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.5733;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.60;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3493,378,0 chrXIV 433629 . A G 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=3.001;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.516;QD=19.75;ReadPosRankSum=2.335;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3015,345,0 chrXIV 433631 . C G 3126 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.84;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3159,348,0 chrXIV 433680 . G A 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=150;Dels=0.00;FS=4.202;HaplotypeScore=7.2314;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=1.617;QD=18.07;ReadPosRankSum=-0.277;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2744,306,0 chrXIV 433706 . T A 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=3.195;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=0.409;QD=20.22;ReadPosRankSum=1.660;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2944,327,0 chrXIV 434058 . T C 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.607;DP=161;Dels=0.00;FS=7.516;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=2.147;QD=22.25;ReadPosRankSum=3.726;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:5,154:161:99:3582,402,0 chrXIV 434340 . C T 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.437;DP=141;Dels=0.00;FS=3.297;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.135;QD=18.81;ReadPosRankSum=1.683;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2685,287,0 chrXIV 434346 . A G 2556 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.51;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2589,291,0 chrXIV 434619 . T C 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=168;Dels=0.00;FS=2.991;HaplotypeScore=14.7746;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.861;QD=22.04;ReadPosRankSum=2.420;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3702,417,0 chrXIV 434930 . C A 5118.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.06;SB=-2.746e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5118,561,0 chrXIV 435046 . C T 4593.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.51;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4593,501,0 chrXIV 435082 . T C 3629.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.60;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3629,405,0 chrXIV 435509 . C T 4623.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.4115;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.35;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4623,493,0 chrXIV 435559 . C T 3988.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.7772;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.16;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3988,429,0 chrXIV 435604 . A G 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=163;Dels=0.00;FS=3.037;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.629;QD=20.77;ReadPosRankSum=2.359;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3385,378,0 chrXIV 435739 . A G 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=138;Dels=0.00;FS=6.441;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.078;QD=22.07;ReadPosRankSum=2.361;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3079,345,0 chrXIV 435841 . G A 4368.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4368,489,0 chrXIV 435886 . G T 3654.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.8095;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.88;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3654,414,0 chrXIV 435955 . T C 3356.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.6550;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.68;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3356,378,0 chrXIV 436222 . T C 2806 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2839,327,0 chrXIV 436303 . G T 2775 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2808,315,0 chrXIV 436441 . A G 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.155;QD=21.69;ReadPosRankSum=1.684;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3157,366,0 chrXIV 436534 . A G 3164 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.44;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3197,357,0 chrXIV 436636 . G A 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=3.571;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.443;QD=22.54;ReadPosRankSum=-1.286;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3008,333,0 chrXIV 436888 . A C 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=3.493;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=0.000;QD=22.48;ReadPosRankSum=1.671;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2596,294,0 chrXIV 436906 . A G 2536 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.31;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2569,297,0 chrXIV 436918 . C T 2554 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.2312;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.11;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2587,276,0 chrXIV 437116 . T C 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.000;QD=23.09;ReadPosRankSum=1.710;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3695,414,0 chrXIV 437153 . G A 3441.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=13.1661;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.85;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3441,387,0 chrXIV 437345 . T C 2852 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=20.37;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2885,336,0 chrXIV 437349 . C T 3278.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=22.30;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3278,348,0 chrXIV 437580 . A G 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=4.845;HaplotypeScore=7.4133;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;MQRankSum=0.277;QD=18.39;ReadPosRankSum=1.703;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2221,246,0 chrXIV 437581 . G A 2228 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.9699;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=18.88;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2261,246,0 chrXIV 437599 . A G 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=140;Dels=0.00;FS=4.964;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=-0.126;QD=16.79;ReadPosRankSum=1.707;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2384,264,0 chrXIV 437882 . T C 3716.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.99;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3716,426,0 chrXIV 437918 . G A 3506.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.75;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3506,399,0 chrXIV 437942 . A G 3842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=3.261;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-1.187;QD=21.58;ReadPosRankSum=1.713;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3842,438,0 chrXIV 438050 . G A 4052.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.02;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,171:176:99:4052,456,0 chrXIV 438374 . T C 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.057;DP=116;Dels=0.00;FS=20.542;HaplotypeScore=8.8772;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=0.439;QD=19.09;ReadPosRankSum=3.319;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:4,110:116:99:2248,255,0 chrXIV 438531 . T C 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=99;Dels=0.00;FS=2.939;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;MQRankSum=-0.590;QD=15.16;ReadPosRankSum=2.349;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:2,96:99:99:1534,174,0 chrXIV 438535 . T C 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=100;Dels=0.00;FS=2.908;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;MQRankSum=0.138;QD=14.21;ReadPosRankSum=2.400;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:2,97:100:99:1454,165,0 chrXIV 438565 . C T 1318 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.4930;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=13.18;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1351,147,0 chrXIV 438570 . C T 1403 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=12.09;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1436,156,0 chrXIV 438717 . G A 3970.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.35;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3970,432,0 chrXIV 439125 . A G 3941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=177;Dels=0.00;FS=12.328;HaplotypeScore=9.9627;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.112;QD=22.27;ReadPosRankSum=2.865;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:3,169:177:99:3941,435,0 chrXIV 439449 . A T 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=179;Dels=0.02;FS=0.000;HaplotypeScore=22.1416;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;MQRankSum=-0.098;QD=22.45;ReadPosRankSum=2.960;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:4018,456,0 chrXIV 439485 . C T 2660 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.05;FS=0.000;HaplotypeScore=10.5746;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;QD=20.62;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2693,303,0 chrXIV 439921 . G A 6661.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=16.2649;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.63;SB=-3.636e+03 GT:AD:DP:GQ:PL 1/1:0,307:308:99:6661,715,0 chrXIV 440295 . C T 5990.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.55;SB=-2.973e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5990,660,0 chrXIV 440865 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.72;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3605,405,0 chrXIV 441069 . T G 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=180;Dels=0.00;FS=6.442;HaplotypeScore=10.5010;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-0.976;QD=22.04;ReadPosRankSum=2.422;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3968,453,0 chrXIV 441185 . T G 4092.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.58;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,203:209:99:4092,459,0 chrXIV 441200 . A T 4095.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.68;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4095,444,0 chrXIV 441233 . T G 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=188;Dels=0.00;FS=4.416;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=0.755;QD=19.02;ReadPosRankSum=1.677;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3575,411,0 chrXIV 441408 . A G 4903.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.8132;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.09;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4903,558,0 chrXIV 441435 . C T 5118.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.35;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:5118,576,0 chrXIV 441615 . C T 7724.01 filter AC=2;AF=1.00;AN=2;DP=372;Dels=0.00;FS=0.000;HaplotypeScore=20.5403;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.76;SB=-4.554e+03 GT:AD:DP:GQ:PL 1/1:0,371:372:99:7724,844,0 chrXIV 441969 . T A 5620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=260;Dels=0.00;FS=3.451;HaplotypeScore=16.6363;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.649;QD=21.62;ReadPosRankSum=1.719;SB=-2.985e+03 GT:AD:DP:GQ:PL 1/1:1,259:260:99:5620,636,0 chrXIV 441999 . A G 5051.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=261;Dels=0.00;FS=2.922;HaplotypeScore=6.6985;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=0.829;QD=19.35;ReadPosRankSum=2.402;SB=-2.912e+03 GT:AD:DP:GQ:PL 1/1:2,254:261:99:5051,567,0 chrXIV 442005 . A C 4912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=267;Dels=0.00;FS=2.964;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.558;QD=18.40;ReadPosRankSum=2.403;SB=-3.002e+03 GT:AD:DP:GQ:PL 1/1:2,264:267:99:4912,570,0 chrXIV 442227 . C T 5491.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=16.2001;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.67;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5491,606,0 chrXIV 442296 . G T 3843.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6430;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.71;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3843,435,0 chrXIV 442648 . T A 3636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;MQRankSum=-0.435;QD=20.31;ReadPosRankSum=1.674;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3636,399,0 chrXIV 442653 . A G 3418.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=19.10;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3418,387,0 chrXIV 442660 . G A 3307.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=18.27;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3307,366,0 chrXIV 442716 . C T 3172 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=18.13;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3205,360,0 chrXIV 442805 . T C 4976.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=22.31;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4976,573,0 chrXIV 442838 . C T 3408.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;QD=20.17;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3408,375,0 chrXIV 442846 . C T 2960 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=18.97;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2993,342,0 chrXIV 442868 . T C 3105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=4.098;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;MQRankSum=0.487;QD=18.59;ReadPosRankSum=1.691;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3138,372,0 chrXIV 442912 . A G 4674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;MQRankSum=-0.918;QD=21.54;ReadPosRankSum=1.716;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:4674,531,0 chrXIV 442949 . G T 4838.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=21.70;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,220:223:99:4838,525,0 chrXIV 442970 . T C 4349.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.11;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4349,489,0 chrXIV 443131 . C A 124.13 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=81.9029;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;QD=1.31;SB=-4.301e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:18:157,18,0 chrXIV 443148 . A G 1699 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=20.23;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1732,195,0 chrXIV 443160 . G A 1543 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=18.82;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1576,174,0 chrXIV 443191 . C T 1337 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=20.26;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1370,156,0 chrXIV 443303 . G A 1019 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=21.23;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1052,117,0 chrXIV 443837 . A G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=0.271;QD=21.48;ReadPosRankSum=1.705;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2783,312,0 chrXIV 443882 . T C 2009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=111;Dels=0.00;FS=6.631;HaplotypeScore=6.0542;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=0.321;QD=18.10;ReadPosRankSum=2.405;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2042,231,0 chrXIV 443889 . C A 1798 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.03;FS=0.000;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=17.12;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1831,201,0 chrXIV 443903 . T C 1956 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=19.18;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1989,231,0 chrXIV 444412 . T C 3721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=0.808;QD=22.55;ReadPosRankSum=1.711;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3721,414,0 chrXIV 444421 . C T 3434.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=21.73;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3434,369,0 chrXIV 444424 . C T 3291.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=20.83;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3291,363,0 chrXIV 444614 . A C 3118 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.65;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3151,351,0 chrXIV 444698 . A G 1712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;MQRankSum=-0.577;QD=17.65;ReadPosRankSum=1.660;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1745,198,0 chrXIV 444709 . C T 1943 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=19.05;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1976,222,0 chrXIV 445056 . G A 2647 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=22.43;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2680,312,0 chrXIV 445158 . C T 4556.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.48;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4556,492,0 chrXIV 445368 . A C 4036.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.464;QD=22.05;ReadPosRankSum=1.713;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4036,468,0 chrXIV 445716 . G A 4114.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.63;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4114,444,0 chrXIV 445914 . A G 3934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=180;Dels=0.00;FS=3.395;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.186;QD=21.86;ReadPosRankSum=1.693;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:1,176:180:99:3934,450,0 chrXIV 445998 . C T 4010.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.79;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4010,435,0 chrXIV 446017 . G A 4002.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.40;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4002,438,0 chrXIV 446044 . A G 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=182;Dels=0.00;FS=2.938;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.007;QD=19.05;ReadPosRankSum=2.409;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:2,179:182:99:3468,399,0 chrXIV 446075 . A G 4269.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=0.507;QD=20.14;ReadPosRankSum=1.716;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4269,474,0 chrXIV 446154 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=17.7003;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.06;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3530,387,0 chrXIV 446337 . G A 2745 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.2827;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.61;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2778,312,0 chrXIV 446584 . G C 2992 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.84;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3025,345,0 chrXIV 446677 . G C 3113 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.5049;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=18.75;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3146,360,0 chrXIV 446682 . T C 3202 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.89;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3235,366,0 chrXIV 446766 . T A 3454.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.8747;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3454,381,0 chrXIV 447382 . G T 5131.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.3560;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.22;SB=-2.445e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:5131,553,0 chrXIV 447433 . A G 3894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=176;Dels=0.00;FS=5.745;HaplotypeScore=13.7160;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.948;QD=22.13;ReadPosRankSum=2.914;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:3,172:176:99:3894,441,0 chrXIV 448099 . C T 3200 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.38;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3233,351,0 chrXIV 448393 . C A 3897.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.7569;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.20;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3897,432,0 chrXIV 448975 . C G 6420.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=19.6775;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.45;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,282:286:99:6420,755,0 chrXIV 449362 . G A 3308.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.4661;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=20.05;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3308,357,0 chrXIV 449371 . C T 3037 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=20.38;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3070,333,0 chrXIV 449386 . T C 2583 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=18.58;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2616,291,0 chrXIV 449423 . A C 2301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;MQRankSum=-0.255;QD=16.92;ReadPosRankSum=1.656;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2334,261,0 chrXIV 449443 . T C 2322 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=15.48;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2355,276,0 chrXIV 449451 . T A 2521 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=17.75;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2554,276,0 chrXIV 449452 . T A 2563 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=4.180;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;MQRankSum=-0.890;QD=17.80;ReadPosRankSum=1.708;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2596,276,0 chrXIV 449521 . G A 2806 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=21.92;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2839,309,0 chrXIV 449542 . T A 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=128;Dels=0.00;FS=3.261;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-1.178;QD=21.93;ReadPosRankSum=1.594;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2840,309,0 chrXIV 449640 . A G 2370 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=21.74;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2403,273,0 chrXIV 449850 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.19;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,127:131:99:2940,321,0 chrXIV 450291 . A G 3470.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.03;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3470,390,0 chrXIV 450320 . A C 3373.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.05;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3373,384,0 chrXIV 450515 . G A 3547.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.49;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3547,390,0 chrXIV 450550 . C G 3175 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.5981;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=22.36;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3208,363,0 chrXIV 450577 . G A 3601.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.7565;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.51;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3601,396,0 chrXIV 450785 . C T 2467 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.22;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2500,276,0 chrXIV 450844 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.56;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2836,309,0 chrXIV 450995 . C A 2221 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.56;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2254,243,0 chrXIV 451144 . G T 3902.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.01;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3902,426,0 chrXIV 451256 . T G 3467.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.4071;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3467,399,0 chrXIV 451380 . T C 3471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.243;DP=162;Dels=0.00;FS=13.569;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.765;QD=21.43;ReadPosRankSum=3.081;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:4,158:162:99:3471,378,0 chrXIV 451722 . G C 3294.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,147:151:99:3294,381,0 chrXIV 451981 . T C 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-1.258;QD=22.66;ReadPosRankSum=1.643;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2729,309,0 chrXIV 452222 . T C 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.049;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=0.506;QD=19.44;ReadPosRankSum=1.701;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2230,252,0 chrXIV 452242 . T C 2407 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.02;FS=0.000;HaplotypeScore=17.7898;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.75;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2440,270,0 chrXIV 452274 . G A 2682 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.12;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2715,291,0 chrXIV 452401 . G A 2885 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.8274;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.04;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2918,327,0 chrXIV 452534 . T C 4004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.365;QD=23.42;ReadPosRankSum=1.691;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:4004,447,0 chrXIV 452848 . G A 3588.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3588,411,0 chrXIV 453168 . C G 2913 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.30;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2946,333,0 chrXIV 453313 . T C 4843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=207;Dels=0.00;FS=2.800;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.912;QD=23.40;ReadPosRankSum=2.426;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:2,204:207:99:4843,543,0 chrXIV 453664 . A C 2638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.142;DP=132;Dels=0.00;FS=3.006;HaplotypeScore=14.1566;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.067;QD=19.98;ReadPosRankSum=2.411;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,126:132:99:2671,306,0 chrXIV 453766 . A G 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=185;Dels=0.00;FS=9.638;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.834;QD=21.68;ReadPosRankSum=2.383;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:4011,456,0 chrXIV 453937 . C T 7107.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=14.1737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,294:295:99:7107,766,0 chrXIV 454378 . G A 5097.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=17.4317;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.23;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,197:202:99:5097,552,0 chrXIV 454997 . C T 4599.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.0715;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.33;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4599,495,0 chrXIV 455264 . G A 4180.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:4180,447,0 chrXIV 455941 . T C 3625.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.71;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3625,411,0 chrXIV 456007 . G A 3971.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=18.7048;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.18;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3971,429,0 chrXIV 456086 . A G 4040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=16.5632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.350;QD=19.33;ReadPosRankSum=1.715;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4040,450,0 chrXIV 456563 . C T 4550.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.82;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4550,486,0 chrXIV 456876 . G A 5020.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=7.4928;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.36;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5020,549,0 chrXIV 456885 . A G 4776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.230;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=1.131;QD=20.77;ReadPosRankSum=0.745;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:2,227:230:99:4776,506,0 chrXIV 456993 . A G 3969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=171;Dels=0.00;FS=2.993;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.300;QD=23.21;ReadPosRankSum=2.335;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3969,456,0 chrXIV 457180 . G C 3011 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.3529;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=22.81;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3044,342,0 chrXIV 457263 . T C 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.210;DP=124;Dels=0.00;FS=2.774;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.810;QD=23.14;ReadPosRankSum=2.390;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2902,333,0 chrXIV 457485 . G A 2858 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.01;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2891,318,0 chrXIV 458177 . A G 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=160;Dels=0.00;FS=6.730;HaplotypeScore=10.9092;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.177;QD=22.95;ReadPosRankSum=2.388;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3672,417,0 chrXIV 458514 . G A 2404 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.46;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2437,285,0 chrXIV 459152 . A G 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.318;QD=21.04;ReadPosRankSum=1.703;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2600,294,0 chrXIV 460919 . C G 3317.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.39;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3317,366,0 chrXIV 461091 . C G 3497.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.16;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3497,396,0 chrXIV 461267 . G A 2501 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.3335;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.38;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2534,276,0 chrXIV 461618 . T A 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.732;QD=22.25;ReadPosRankSum=1.702;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2570,282,0 chrXIV 461705 . A G 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=124;Dels=0.00;FS=8.119;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.109;QD=20.66;ReadPosRankSum=2.390;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2595,297,0 chrXIV 461930 . C T 2281 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.55;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2314,264,0 chrXIV 461994 . A T 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.303;QD=23.31;ReadPosRankSum=1.703;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2854,312,0 chrXIV 462339 . G A 3485.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=24.72;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3485,372,0 chrXIV 462377 . G A 3155 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=98.9850;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=22.54;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3188,351,0 chrXIV 462443 . C G 3540.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.11;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3540,396,0 chrXIV 462447 . A G 3398.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=19.09;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3398,384,0 chrXIV 462572 . T C 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=175;Dels=0.00;FS=6.939;HaplotypeScore=4.9675;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-0.779;QD=20.81;ReadPosRankSum=2.365;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3642,405,0 chrXIV 462575 . A C 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=179;Dels=0.00;FS=3.012;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=-1.379;QD=20.07;ReadPosRankSum=2.395;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3592,402,0 chrXIV 463310 . A G 3069 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3102,360,0 chrXIV 463556 . C A 2736 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,126:130:99:2769,312,0 chrXIV 463775 . C T 3503.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.67;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3503,384,0 chrXIV 463992 . C G 2771 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2804,321,0 chrXIV 464043 . G C 3382.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.41;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3382,384,0 chrXIV 464849 . C T 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.204;DP=152;Dels=0.00;FS=3.097;HaplotypeScore=9.9458;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=-1.571;QD=23.66;ReadPosRankSum=-0.883;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3597,383,0 chrXIV 465005 . C T 3736.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.2593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3736,405,0 chrXIV 465764 . C A 4355.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4355,483,0 chrXIV 465884 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3635,402,0 chrXIV 465982 . C T 3132 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.2500;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3165,357,0 chrXIV 466168 . T C 3441.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.1327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3441,384,0 chrXIV 466221 . C T 3043 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.23;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3076,336,0 chrXIV 466265 . A T 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.095;HaplotypeScore=3.2433;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=1.307;QD=21.72;ReadPosRankSum=1.665;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3367,369,0 chrXIV 466279 . A G 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=3.242;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.090;QD=20.76;ReadPosRankSum=1.710;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3230,357,0 chrXIV 466363 . C T 4794.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.9142;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.97;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4794,546,0 chrXIV 466584 . G A 6011.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=15.0602;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.86;SB=-3.262e+03 GT:AD:DP:GQ:PL 1/1:0,272:275:99:6011,669,0 chrXIV 466623 . C T 5644.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=10.0313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-2.880e+03 GT:AD:DP:GQ:PL 1/1:0,255:258:99:5644,615,0 chrXIV 466760 . G A 4210.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.06;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4210,444,0 chrXIV 466878 . A G 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.648;QD=23.52;ReadPosRankSum=1.704;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2949,333,0 chrXIV 467219 . A G 2993 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.2777;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.75;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3026,336,0 chrXIV 467514 . G A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.21;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3487,399,0 chrXIV 468108 . A G 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=163;Dels=0.00;FS=6.544;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-0.912;QD=23.21;ReadPosRankSum=2.389;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3783,438,0 chrXIV 468168 . G A 2949 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=23.22;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2982,327,0 chrXIV 468180 . G A 2577 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=21.47;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2610,285,0 chrXIV 468187 . A G 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.352;HaplotypeScore=3.8813;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=-0.451;QD=19.73;ReadPosRankSum=1.645;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2381,276,0 chrXIV 468438 . A G 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=141;Dels=0.00;FS=6.368;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=1.003;QD=22.30;ReadPosRankSum=2.397;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3177,351,0 chrXIV 468488 . A G 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.5808;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.713;QD=22.48;ReadPosRankSum=1.707;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3090,345,0 chrXIV 468594 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.85;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2983,324,0 chrXIV 468666 . C T 2687 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2720,294,0 chrXIV 469625 . G A 4449.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.14;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4449,489,0 chrXIV 469786 . C T 2447 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.6659;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.08;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2480,270,0 chrXIV 470301 . C T 3504.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.9172;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.98;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3504,384,0 chrXIV 470406 . G A 2480 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.18;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2513,273,0 chrXIV 470580 . T A 2288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.365;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=0.543;QD=22.43;ReadPosRankSum=1.664;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2321,252,0 chrXIV 470587 . C T 2227 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.06;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2260,249,0 chrXIV 471383 . C T 4208.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.3780;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.61;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4208,462,0 chrXIV 472054 . C T 3904.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.8480;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.57;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3904,429,0 chrXIV 472094 . A G 3567.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.02;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3567,411,0 chrXIV 472579 . G T 61.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.087;DP=148;Dels=0.00;FS=7.816;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=2;MQRankSum=1.643;QD=0.42;ReadPosRankSum=-5.493;SB=-9.551e+01 GT:AD:DP:GQ:PL 1/1:133,15:148:12:94,12,0 chrXIV 472584 . G C 29.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.492;DP=149;Dels=0.00;FS=3.195;HaplotypeScore=11.8392;MLEAC=1;MLEAF=0.500;MQ=52.44;MQ0=2;MQRankSum=0.842;QD=0.20;ReadPosRankSum=1.708;SB=-1.778e+03 GT:AD:DP:GQ:PL 0/1:1,145:149:11:59,0,11 chrXIV 472652 . G A 3165 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.4520;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=2;QD=18.62;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3198,360,0 chrXIV 472799 . A T 2868 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.09;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2901,330,0 chrXIV 472832 . A G 3439.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.63;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3439,381,0 chrXIV 473146 . G C 2324 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.21;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2357,270,0 chrXIV 473303 . T C 3180 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.55;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3213,357,0 chrXIV 473321 . A G 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=137;Dels=0.00;FS=3.680;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-1.706;QD=21.07;ReadPosRankSum=1.706;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,132:137:99:2920,330,0 chrXIV 473357 . A G 2405 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.73;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2438,270,0 chrXIV 473375 . G A 1809 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=16.15;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1842,207,0 chrXIV 473389 . G C 1997 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.32;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2030,225,0 chrXIV 473512 . A G 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.798;QD=22.37;ReadPosRankSum=1.708;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3232,360,0 chrXIV 473603 . C T 4412.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=23.59;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4412,483,0 chrXIV 473648 . T C 3548.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.50;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3548,414,0 chrXIV 473723 . G C 3031 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.20;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3064,351,0 chrXIV 473725 . T C 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=145;Dels=0.00;FS=6.298;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.265;QD=20.75;ReadPosRankSum=2.381;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3042,348,0 chrXIV 473855 . C T 3054 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.66;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3087,342,0 chrXIV 473948 . T C 3060 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.67;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3093,348,0 chrXIV 474098 . A G 2526 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.54;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2559,294,0 chrXIV 474101 . T C 2360 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=19.34;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2393,270,0 chrXIV 474329 . T A 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.6224;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=1.486;QD=23.52;ReadPosRankSum=1.708;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3317,369,0 chrXIV 474540 . T G 4641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=0.662;QD=21.19;ReadPosRankSum=1.668;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:1,216:219:99:4641,546,0 chrXIV 474581 . C T 3742.01 SnpCluster AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.0089;MLEAC=2;MLEAF=1.00;MQ=46.71;MQ0=0;QD=19.29;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:3742,402,0 chrXIV 474589 . C G 3407.01 SnpCluster AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.6996;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;QD=18.03;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3407,384,0 chrXIV 474591 . G T 3385.01 SnpCluster AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.6996;MLEAC=2;MLEAF=1.00;MQ=44.08;MQ0=0;QD=18.20;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3385,369,0 chrXIV 474719 . C T 4093.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.54;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4093,450,0 chrXIV 475172 . T C 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=136;Dels=0.00;FS=5.283;HaplotypeScore=13.8777;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.322;QD=20.18;ReadPosRankSum=1.706;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2778,318,0 chrXIV 475211 . A G 3082 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3115,348,0 chrXIV 475364 . A G 2346 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2379,264,0 chrXIV 475693 . A G 3919.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.47;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3919,429,0 chrXIV 475712 . T G 3821.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.61;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3821,450,0 chrXIV 475754 . G A 4703.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=19.8634;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.28;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,215:221:99:4703,531,0 chrXIV 475889 . C T 4388.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.59;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4388,495,0 chrXIV 476599 . A C 3365.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.28;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3365,375,0 chrXIV 476731 . A G 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-1.660;QD=21.80;ReadPosRankSum=1.696;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2126,237,0 chrXIV 476810 . T C 1778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=10.525;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=0.811;QD=22.22;ReadPosRankSum=1.688;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1811,201,0 chrXIV 477090 . G T 2706 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.2753;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=24.16;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2739,303,0 chrXIV 477349 . C T 4232.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.98;SB=-2.829e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4232,459,0 chrXIV 477353 . A G 4289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=0.547;QD=18.98;ReadPosRankSum=1.686;SB=-2.689e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:4289,483,0 chrXIV 477388 . A G 4908.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=12.5039;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=19.55;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:0,251:251:99:4908,549,0 chrXIV 477496 . C T 4246.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.93;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4246,480,0 chrXIV 477505 . G A 3956.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=19.30;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3956,441,0 chrXIV 477523 . G T 3326.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.9716;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=17.88;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3326,372,0 chrXIV 477610 . A G 2757 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=17.67;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2790,312,0 chrXIV 477622 . G A 2934 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.7732;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=17.57;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2967,321,0 chrXIV 477705 . C T 4916.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.6632;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.45;SB=-2.712e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4916,540,0 chrXIV 477742 . G A 4293.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=20.0162;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.79;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4293,486,0 chrXIV 477931 . C A 4051.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.28;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4051,447,0 chrXIV 478035 . G A 3477.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.2559;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.53;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3477,393,0 chrXIV 478041 . T C 3366.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=20.04;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3366,378,0 chrXIV 478186 . A T 4338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.416;DP=197;Dels=0.00;FS=20.668;HaplotypeScore=2.9571;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-2.335;QD=22.02;ReadPosRankSum=3.265;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:4,193:197:99:4338,471,0 chrXIV 478196 . C G 3847.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=21.14;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3847,438,0 chrXIV 478376 . C T 3122 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=171.6420;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=17.34;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,176:180:99:3155,366,0 chrXIV 479345 . T C 2049 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.09;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2082,234,0 chrXIV 479435 . C T 1010 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=10.6656;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=16.03;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1043,117,0 chrXIV 479462 . T C 231.64 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.178;DP=60;Dels=0.00;FS=8.545;HaplotypeScore=34.0033;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;MQRankSum=2.160;QD=3.86;ReadPosRankSum=1.050;SB=-1.006e+02 GT:AD:DP:GQ:PL 1/1:31,29:60:11:264,11,0 chrXIV 479609 . T C 2087 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.68;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2120,240,0 chrXIV 479875 . T C 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=172;Dels=0.00;FS=3.354;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=1;MQRankSum=0.395;QD=18.23;ReadPosRankSum=1.712;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3168,366,0 chrXIV 479932 . G A 3270.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=15.00;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:3270,360,0 chrXIV 480082 . A T 4673.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.48;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4673,516,0 chrXIV 480118 . G T 4535.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=22.90;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4535,513,0 chrXIV 480343 . C T 4525.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=19.7780;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.63;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4525,507,0 chrXIV 480401 . C T 4596.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.8899;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.19;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4596,495,0 chrXIV 480487 . A C 4856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=208;Dels=0.00;FS=3.543;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.266;QD=23.35;ReadPosRankSum=1.682;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4856,552,0 chrXIV 480527 . A C 5032.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=18.4299;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.71;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,241:243:99:5032,582,0 chrXIV 480573 . T C 3610.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=18.14;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3610,420,0 chrXIV 480622 . C A 3334.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.1958;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=17.83;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3334,372,0 chrXIV 480652 . G A 4398.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.6414;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.88;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4398,471,0 chrXIV 480718 . G C 5059.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=15.8005;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.90;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5059,567,0 chrXIV 480883 . T C 3389.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.05;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3389,378,0 chrXIV 481081 . C T 2678 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.89;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2711,294,0 chrXIV 481402 . C T 3905.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.7836;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.66;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3905,444,0 chrXIV 481534 . T C 4281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=192;Dels=0.00;FS=8.109;HaplotypeScore=11.0762;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.583;QD=22.30;ReadPosRankSum=2.398;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:2,188:192:99:4281,480,0 chrXIV 481576 . T C 3552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=159;Dels=0.00;FS=3.267;HaplotypeScore=10.3647;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.688;QD=22.34;ReadPosRankSum=1.666;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3552,396,0 chrXIV 481663 . G A 2869 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.16;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2902,318,0 chrXIV 481825 . C T 3899.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.41;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3899,429,0 chrXIV 481845 . G A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.0785;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.09;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4065,438,0 chrXIV 482960 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.5184;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3153,360,0 chrXIV 483093 . C T 2725 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=18.41;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2758,300,0 chrXIV 483098 . G A 2619 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=17.94;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2652,303,0 chrXIV 483386 . G T 2543 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.11;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2576,279,0 chrXIV 483741 . G A 3814.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.61;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3814,429,0 chrXIV 483894 . G A 3110 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.68;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,154:158:99:3143,366,0 chrXIV 483951 . C T 3705.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.3353;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.45;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3705,411,0 chrXIV 483985 . C G 3865.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.0034;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.84;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:3865,435,0 chrXIV 484017 . C A 4214.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.22;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4214,462,0 chrXIV 484452 . C T 4596.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.69;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4596,510,0 chrXIV 484786 . C A 3427.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.28;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3427,396,0 chrXIV 484851 . A G 4059.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=206;Dels=0.00;FS=9.161;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-0.550;QD=19.70;ReadPosRankSum=2.965;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:3,200:206:99:4059,474,0 chrXIV 484869 . A G 4203.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=204;Dels=0.00;FS=3.344;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.282;QD=20.60;ReadPosRankSum=1.715;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:4203,480,0 chrXIV 484904 . A G 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=222;Dels=0.00;FS=3.029;HaplotypeScore=11.4341;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-0.503;QD=20.39;ReadPosRankSum=2.427;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:4527,507,0 chrXIV 485289 . G A 4813.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4813,525,0 chrXIV 485525 . A G 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=3.530;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.289;QD=24.26;ReadPosRankSum=1.706;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3260,357,0 chrXIV 485799 . A G 3688.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.1898;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.22;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3688,411,0 chrXIV 485870 . C T 4555.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.89;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4555,516,0 chrXIV 485972 . T C 4602.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.328;QD=22.23;ReadPosRankSum=1.715;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:1,205:207:99:4602,534,0 chrXIV 486092 . T C 3562.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.12;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3562,411,0 chrXIV 486859 . T A 3655.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=22.70;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3655,390,0 chrXIV 486864 . A G 3514.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.2981;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.79;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3514,387,0 chrXIV 487176 . T G 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.152;DP=193;Dels=0.00;FS=4.571;HaplotypeScore=5.8565;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.900;QD=19.51;ReadPosRankSum=3.297;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:4,189:193:99:3766,426,0 chrXIV 487177 . T G 3847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=199;Dels=0.00;FS=9.574;HaplotypeScore=8.2225;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-1.526;QD=19.33;ReadPosRankSum=2.903;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:3,194:199:99:3847,426,0 chrXIV 487214 . T C 4063.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=202;Dels=0.00;FS=6.078;HaplotypeScore=12.1139;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.945;QD=20.11;ReadPosRankSum=2.965;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:3,198:202:99:4063,471,0 chrXIV 487250 . G C 4242.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=18.0161;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.90;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,199:203:99:4242,474,0 chrXIV 487393 . C G 3938.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.1745;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.76;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3938,438,0 chrXIV 487663 . T C 7778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.056;DP=346;Dels=0.00;FS=10.322;HaplotypeScore=30.0037;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.343;QD=22.48;ReadPosRankSum=4.164;SB=-3.159e+03 GT:AD:DP:GQ:PL 1/1:6,338:346:99:7778,870,0 chrXIV 487830 . G A 7679.01 PASS AC=2;AF=1.00;AN=2;DP=351;Dels=0.00;FS=0.000;HaplotypeScore=21.2179;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.88;SB=-3.954e+03 GT:AD:DP:GQ:PL 1/1:0,346:351:99:7679,838,0 chrXIV 487880 . T C 6801.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=16.0494;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.49;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:0,348:349:99:6801,756,0 chrXIV 487935 . C T 6930.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=11.0810;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.00;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,327:330:99:6930,768,0 chrXIV 488016 . C T 5474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.364;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.5424;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.629;QD=22.81;ReadPosRankSum=1.658;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,236:240:99:5474,593,0 chrXIV 488208 . T C 3297.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.13;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3297,366,0 chrXIV 488281 . C A 4199.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.72;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4199,462,0 chrXIV 488587 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.77;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3559,390,0 chrXIV 488594 . A G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=0.517;QD=20.13;ReadPosRankSum=1.692;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3462,393,0 chrXIV 488598 . G C 3561.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=19.67;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3561,399,0 chrXIV 488965 . T C 3992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.4434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.850;QD=22.94;ReadPosRankSum=2.421;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:2,170:174:99:3992,456,0 chrXIV 489321 . G C 4428.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4428,483,0 chrXIV 489385 . A G 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=161;Dels=0.00;FS=2.940;HaplotypeScore=7.8772;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.898;QD=23.86;ReadPosRankSum=2.373;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3841,444,0 chrXIV 489468 . G C 3629.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.36;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3629,399,0 chrXIV 489631 . A G 4079.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=181;Dels=0.00;FS=4.351;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.184;QD=22.54;ReadPosRankSum=1.713;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,176:181:99:4079,450,0 chrXIV 489759 . A G 4402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=215;Dels=0.00;FS=7.183;HaplotypeScore=5.9077;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.678;QD=20.47;ReadPosRankSum=2.426;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:2,210:215:99:4402,495,0 chrXIV 489765 . A G 4178.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.7422;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.08;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4178,489,0 chrXIV 490203 . C A 2014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=157;Dels=0.00;FS=6.336;HaplotypeScore=4.1896;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=1.340;QD=12.83;ReadPosRankSum=2.370;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:2047,237,0 chrXIV 490267 . T C 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=149;Dels=0.01;FS=4.901;HaplotypeScore=14.0358;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-0.972;QD=19.70;ReadPosRankSum=3.398;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:4,141:148:99:2969,339,0 chrXIV 490287 . A T 3174 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.2445;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.59;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3207,360,0 chrXIV 490355 . T A 2977 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.63;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3010,327,0 chrXIV 490406 . T G 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=151;Dels=0.00;FS=3.343;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.825;QD=22.06;ReadPosRankSum=1.709;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3331,375,0 chrXIV 490814 . A G 8101.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.783;DP=404;Dels=0.00;FS=7.811;HaplotypeScore=23.7384;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.442;QD=20.05;ReadPosRankSum=3.737;SB=-3.724e+03 GT:AD:DP:GQ:PL 1/1:5,394:404:99:8101,909,0 chrXIV 491097 . A G 4899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=236;Dels=0.00;FS=2.949;HaplotypeScore=9.0508;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-0.390;QD=20.76;ReadPosRankSum=2.387;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:2,234:236:99:4899,546,0 chrXIV 491107 . C T 4902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=-0.810;QD=20.86;ReadPosRankSum=1.643;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:1,232:235:99:4902,537,0 chrXIV 491114 . G A 4927.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=20.11;SB=-2.903e+03 GT:AD:DP:GQ:PL 1/1:0,245:245:99:4927,534,0 chrXIV 491255 . C T 5071.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.95;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:0,228:231:99:5071,570,0 chrXIV 491381 . T C 4305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.301;DP=263;Dels=0.00;FS=9.076;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.316;QD=16.37;ReadPosRankSum=3.255;SB=-3.001e+03 GT:AD:DP:GQ:PL 1/1:4,258:263:99:4305,492,0 chrXIV 491385 . A C 3976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=263;Dels=0.00;FS=6.276;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=-0.194;QD=15.12;ReadPosRankSum=2.421;SB=-3.229e+03 GT:AD:DP:GQ:PL 1/1:2,258:263:99:3976,459,0 chrXIV 491679 . G T 6315.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=18.5328;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.00;SB=-3.335e+03 GT:AD:DP:GQ:PL 1/1:0,284:287:99:6315,685,0 chrXIV 491900 . T C 3868.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=22.10;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3868,438,0 chrXIV 491913 . T G 3647.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3418;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.20;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3647,417,0 chrXIV 492185 . A G 3429.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.1514;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=20.05;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3429,387,0 chrXIV 492190 . G C 2968 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.7229;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=17.77;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3001,345,0 chrXIV 492374 . C A 5754.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=4.5912;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=18.93;SB=-3.805e+03 GT:AD:DP:GQ:PL 1/1:0,299:304:99:5754,645,0 chrXIV 492375 . A G 5705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=307;Dels=0.00;FS=3.320;HaplotypeScore=6.1686;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=0.505;QD=18.58;ReadPosRankSum=1.709;SB=-3.632e+03 GT:AD:DP:GQ:PL 1/1:1,304:307:99:5705,648,0 chrXIV 492521 . G A 6265.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=19.9673;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.70;SB=-2.985e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:6265,682,0 chrXIV 492680 . G A 5457.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.32;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5457,618,0 chrXIV 492836 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.9035;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.43;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2770,300,0 chrXIV 492875 . G A 2307 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.60;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2340,255,0 chrXIV 493333 . T G 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=141;Dels=0.00;FS=10.947;HaplotypeScore=8.9468;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.921;QD=22.90;ReadPosRankSum=2.950;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:3262,363,0 chrXIV 494028 . T C 3034 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.99;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3067,345,0 chrXIV 494033 . T C 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.151;QD=20.67;ReadPosRankSum=1.656;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2886,327,0 chrXIV 494368 . G A 3172 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3205,348,0 chrXIV 494731 . T C 1949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.0330;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-0.557;QD=16.95;ReadPosRankSum=1.431;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1982,222,0 chrXIV 494733 . C T 1981 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.51;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2014,228,0 chrXIV 495101 . A T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=23.62;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3283,360,0 chrXIV 495222 . A G 3335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=139;Dels=0.00;FS=8.262;HaplotypeScore=12.1988;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=-0.982;QD=23.99;ReadPosRankSum=1.813;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3335,375,0 chrXIV 495265 . T C 3151 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;QD=21.44;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3184,363,0 chrXIV 495301 . T C 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=163;Dels=0.00;FS=6.544;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;MQRankSum=-0.626;QD=16.80;ReadPosRankSum=2.314;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:2772,315,0 chrXIV 495319 . C A 2786 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=17.75;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2819,315,0 chrXIV 495393 . A G 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=143;Dels=0.00;FS=2.693;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.627;QD=20.41;ReadPosRankSum=2.415;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2951,342,0 chrXIV 495396 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.59;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2969,321,0 chrXIV 495918 . C T 4227.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.02;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4227,459,0 chrXIV 496505 . G C 5269.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=15.9779;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.68;SB=-2.741e+03 GT:AD:DP:GQ:PL 1/1:0,239:243:99:5269,603,0 chrXIV 496676 . G C 6060.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=15.7210;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.87;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,262:265:99:6060,690,0 chrXIV 496792 . T G 5515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=276;Dels=0.00;FS=3.701;HaplotypeScore=16.4581;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.121;QD=19.98;ReadPosRankSum=1.694;SB=-2.931e+03 GT:AD:DP:GQ:PL 1/1:1,271:276:99:5515,621,0 chrXIV 497090 . C T 2778 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.1014;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=17.81;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2811,306,0 chrXIV 497099 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=18.65;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3017,330,0 chrXIV 497300 . G A 3833.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=20.95;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3833,417,0 chrXIV 497303 . C G 3597.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=19.66;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3597,417,0 chrXIV 497324 . A G 4026.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.8267;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=20.33;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4026,450,0 chrXIV 497369 . G A 4979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=22.9173;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.498;QD=20.75;ReadPosRankSum=-1.390;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:1,237:240:99:4979,549,0 chrXIV 497492 . A G 4854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=230;Dels=0.00;FS=7.194;HaplotypeScore=18.3426;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.570;QD=21.10;ReadPosRankSum=2.406;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:2,224:230:99:4854,555,0 chrXIV 497545 . C T 5581.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.97;SB=-2.956e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5581,630,0 chrXIV 497603 . G A 5265.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.7726;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.40;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5265,579,0 chrXIV 497738 . G A 4861.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=19.2779;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.06;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4861,522,0 chrXIV 497780 . G A 3841.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.33;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3841,426,0 chrXIV 498005 . T C 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=161;Dels=0.00;FS=2.886;HaplotypeScore=5.5112;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.422;QD=22.07;ReadPosRankSum=2.388;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3553,405,0 chrXIV 498032 . A G 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=158;Dels=0.00;FS=8.345;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.087;QD=22.49;ReadPosRankSum=2.418;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3553,402,0 chrXIV 498110 . C A 4308.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.2815;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.56;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4308,495,0 chrXIV 498514 . T C 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=138;Dels=0.00;FS=7.131;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-1.007;QD=20.30;ReadPosRankSum=2.378;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2835,321,0 chrXIV 498539 . T C 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=3.040;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.221;QD=21.08;ReadPosRankSum=2.414;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2984,345,0 chrXIV 498573 . C T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.6999;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.36;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3532,381,0 chrXIV 499006 . T A 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.597;QD=21.60;ReadPosRankSum=1.651;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2819,306,0 chrXIV 499075 . A C 2760 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2793,312,0 chrXIV 499150 . T C 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=121;Dels=0.00;FS=5.999;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=-0.219;QD=20.45;ReadPosRankSum=2.942;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:3,117:121:99:2508,285,0 chrXIV 499164 . C T 2591 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=18.91;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2624,282,0 chrXIV 499188 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=166;Dels=0.00;FS=9.183;HaplotypeScore=8.6112;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=0.437;QD=20.04;ReadPosRankSum=2.420;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3327,381,0 chrXIV 499291 . C T 3183 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=22.74;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3216,357,0 chrXIV 499366 . G A 3081 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=21.25;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3114,342,0 chrXIV 499402 . T C 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=5.063;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=0.832;QD=19.84;ReadPosRankSum=1.687;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3088,339,0 chrXIV 499478 . T A 1003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.837;DP=105;Dels=0.00;FS=6.119;HaplotypeScore=20.9019;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;MQRankSum=1.318;QD=9.55;ReadPosRankSum=-0.202;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:3,102:105:99:1036,123,0 chrXIV 499535 . A T 1456 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=11.6342;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=12.13;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1489,162,0 chrXIV 499539 . A G 1440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=123;Dels=0.00;FS=2.942;HaplotypeScore=3.3969;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;MQRankSum=-1.830;QD=11.71;ReadPosRankSum=1.990;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:1473,171,0 chrXIV 499614 . G A 2583 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.7084;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=16.88;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2616,297,0 chrXIV 499647 . T C 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=0.344;QD=20.30;ReadPosRankSum=2.957;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3330,381,0 chrXIV 499656 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.81;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3559,384,0 chrXIV 499731 . T C 6441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.702;DP=284;Dels=0.00;FS=2.281;HaplotypeScore=17.9643;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=0.240;QD=22.68;ReadPosRankSum=3.807;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:5,278:284:99:6441,726,0 chrXIV 500387 . A G 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=141;Dels=0.00;FS=2.945;HaplotypeScore=9.0313;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.026;QD=21.81;ReadPosRankSum=2.362;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3108,348,0 chrXIV 500627 . T G 2337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.526;QD=20.87;ReadPosRankSum=1.701;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2370,276,0 chrXIV 500652 . T A 2246 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.39;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2279,246,0 chrXIV 500701 . T C 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=1.052;QD=19.54;ReadPosRankSum=1.670;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2241,252,0 chrXIV 500711 . T C 2247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.026;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.3592;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-1.304;QD=19.04;ReadPosRankSum=2.365;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:2,114:118:99:2280,238,0 chrXIV 500767 . A G 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=96.1173;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.031;QD=18.49;ReadPosRankSum=1.669;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2085,243,0 chrXIV 501022 . G A 1986 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.83;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2019,222,0 chrXIV 501040 . G A 2208 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.65;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2241,249,0 chrXIV 501141 . T A 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=98.5962;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.334;QD=0.13;ReadPosRankSum=1.637;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:6:45,6,0 chrXIV 501214 . A G 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=3.997;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.549;QD=23.23;ReadPosRankSum=1.704;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2890,330,0 chrXIV 501247 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=22.11;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2863,315,0 chrXIV 501320 . C T 2336 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.9794;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.63;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2369,258,0 chrXIV 501361 . A G 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.179;QD=20.26;ReadPosRankSum=1.702;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2383,273,0 chrXIV 501363 . G A 2510 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=22.21;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2543,273,0 chrXIV 501440 . A T 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=156;Dels=0.00;FS=3.214;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;MQRankSum=-1.143;QD=18.51;ReadPosRankSum=1.709;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2920,333,0 chrXIV 501452 . T C 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=149;Dels=0.00;FS=2.926;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;MQRankSum=0.274;QD=17.60;ReadPosRankSum=2.416;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:2655,306,0 chrXIV 501463 . C A 2954 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=18.58;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:2987,321,0 chrXIV 501631 . T C 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=165;Dels=0.00;FS=2.979;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=0.990;QD=22.81;ReadPosRankSum=2.360;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3763,420,0 chrXIV 501789 . C T 3888.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=23.5008;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.06;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3888,423,0 chrXIV 501828 . T C 4342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=17.0491;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.070;QD=21.28;ReadPosRankSum=1.681;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4342,495,0 chrXIV 501910 . A T 4136.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.65;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4136,453,0 chrXIV 501935 . G A 4161.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.23;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4161,456,0 chrXIV 502322 . A G 6968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=328;Dels=0.00;FS=5.703;HaplotypeScore=22.5390;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.709;QD=21.24;ReadPosRankSum=2.899;SB=-3.337e+03 GT:AD:DP:GQ:PL 1/1:3,324:328:99:6968,807,0 chrXIV 502885 . A G 1999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.3054;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.693;QD=18.01;ReadPosRankSum=1.701;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2032,234,0 chrXIV 503261 . A G 2473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=116;Dels=0.00;FS=8.951;HaplotypeScore=12.0010;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=1.694;QD=21.32;ReadPosRankSum=2.385;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:2,112:116:99:2506,285,0 chrXIV 503642 . C T 3104 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3137,354,0 chrXIV 505410 . C T 2878 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.16;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2911,327,0 chrXIV 505825 . A G 3864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.175;QD=24.46;ReadPosRankSum=1.688;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3864,432,0 chrXIV 506324 . G A 5070.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.2857;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:5070,558,0 chrXIV 506450 . T C 4994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=231;Dels=0.00;FS=6.066;HaplotypeScore=14.8988;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.233;QD=21.62;ReadPosRankSum=2.926;SB=-2.723e+03 GT:AD:DP:GQ:PL 1/1:3,226:231:99:4994,561,0 chrXIV 506906 . A C 1719 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=11.31;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:1752,195,0 chrXIV 506920 . G A 2050 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=14.24;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2083,225,0 chrXIV 507053 . T G 2568 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=20.06;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2601,297,0 chrXIV 507058 . G A 2577 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.6385;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=19.82;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2610,282,0 chrXIV 507351 . C T 2097 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=19.78;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2130,237,0 chrXIV 507355 . T A 2026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=3.424;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=0.220;QD=18.25;ReadPosRankSum=1.669;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2059,228,0 chrXIV 507430 . G T 2004 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=9.8727;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=16.70;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2037,219,0 chrXIV 507431 . A T 1999 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.561;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.2953;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;MQRankSum=-1.595;QD=16.94;ReadPosRankSum=2.906;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2032,219,0 chrXIV 507432 . A T 2001 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.719;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.7180;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;MQRankSum=-0.386;QD=16.96;ReadPosRankSum=2.366;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2034,219,0 chrXIV 507433 . A C 1932 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.9293;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;QD=16.37;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1965,222,0 chrXIV 507599 . A T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=23.74;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3537,393,0 chrXIV 507677 . T A 4456.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.97;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4456,495,0 chrXIV 508159 . T C 5124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=224;Dels=0.00;FS=7.624;HaplotypeScore=9.3295;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.633;QD=22.88;ReadPosRankSum=2.383;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:2,221:224:99:5124,570,0 chrXIV 508238 . G A 4563.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.8967;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.52;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4563,516,0 chrXIV 508321 . C T 3760.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.73;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3760,420,0 chrXIV 508617 . G A 2127 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=20.26;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2160,237,0 chrXIV 508645 . T C 2081 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=18.58;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2114,246,0 chrXIV 508657 . A G 2123 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=17.55;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2156,243,0 chrXIV 508667 . A G 1989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=0.670;QD=17.76;ReadPosRankSum=2.384;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2022,228,0 chrXIV 508743 . T C 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.732;DP=95;Dels=0.00;FS=5.475;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=1.957;QD=21.54;ReadPosRankSum=2.925;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:3,91:95:99:2079,240,0 chrXIV 508757 . C T 2433 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=25.08;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2466,267,0 chrXIV 509043 . A G 4509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=193;Dels=0.00;FS=6.076;HaplotypeScore=8.2200;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.634;QD=23.36;ReadPosRankSum=2.932;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:3,189:193:99:4509,504,0 chrXIV 509173 . C A 3215 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.17;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3248,357,0 chrXIV 509283 . T C 3591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=3.823;HaplotypeScore=12.0682;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.605;QD=21.90;ReadPosRankSum=1.711;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3591,408,0 chrXIV 509369 . G A 3804.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.78;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,163:167:99:3804,417,0 chrXIV 509478 . C A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=16.7549;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3605,396,0 chrXIV 509526 . C T 4180.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.30;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4180,459,0 chrXIV 509580 . G T 4059.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,174:179:99:4059,459,0 chrXIV 509646 . C T 3797.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3797,414,0 chrXIV 510274 . C A 1996 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;QD=14.36;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2029,225,0 chrXIV 510285 . A G 1560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.4993;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=0;MQRankSum=-1.210;QD=12.38;ReadPosRankSum=1.705;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:1593,183,0 chrXIV 510300 . T C 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=117;Dels=0.00;FS=8.966;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;MQRankSum=-2.260;QD=11.44;ReadPosRankSum=2.408;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:1372,156,0 chrXIV 510362 . T A 1122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=83;Dels=0.00;FS=3.047;HaplotypeScore=7.5610;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=1.232;QD=13.52;ReadPosRankSum=-0.104;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1155,132,0 chrXIV 510459 . C T 2214 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=23.31;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2247,243,0 chrXIV 510479 . A G 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.350;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=0.615;QD=22.20;ReadPosRankSum=1.695;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2098,234,0 chrXIV 510694 . A G 3156 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=15.1080;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.04;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3189,354,0 chrXIV 510728 . G A 3397.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.76;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3397,375,0 chrXIV 510803 . A G 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.735;DP=167;Dels=0.00;FS=10.034;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.747;QD=22.01;ReadPosRankSum=2.957;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:3,160:167:99:3675,417,0 chrXIV 510829 . A T 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=3.647;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-0.354;QD=20.10;ReadPosRankSum=1.712;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3537,396,0 chrXIV 510838 . T C 3370.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=18.62;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3370,393,0 chrXIV 511502 . A G 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=3.234;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.539;QD=22.71;ReadPosRankSum=1.655;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4088,456,0 chrXIV 511580 . G A 4168.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=16.7630;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4168,456,0 chrXIV 511838 . T C 5262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=229;Dels=0.00;FS=3.029;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.005;QD=22.98;ReadPosRankSum=2.428;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:2,226:229:99:5262,591,0 chrXIV 511916 . C T 5397.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.68;SB=-3.034e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:5397,609,0 chrXIV 512000 . T C 6160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=18.7642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.593;QD=21.31;ReadPosRankSum=1.684;SB=-3.300e+03 GT:AD:DP:GQ:PL 1/1:1,288:289:99:6160,714,0 chrXIV 512400 . C T 1502 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1535,162,0 chrXIV 512455 . G A 368 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.9761;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=15.33;SB=-6.725e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:45:401,45,0 chrXIV 512722 . A G 4043.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.11;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,160:161:99:4043,450,0 chrXIV 512905 . C T 5228.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=12.3007;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.34;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5228,594,0 chrXIV 513243 . T C 4278.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.4071;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.50;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4278,480,0 chrXIV 513525 . A G 3352.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=9.5971;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.08;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3352,375,0 chrXIV 513783 . G A 3412.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3412,372,0 chrXIV 513927 . A G 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=3.632;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.416;QD=23.21;ReadPosRankSum=1.709;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3482,390,0 chrXIV 514279 . T A 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.577;QD=23.07;ReadPosRankSum=1.687;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3530,393,0 chrXIV 515028 . C T 3958.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.36;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3958,447,0 chrXIV 515081 . G A 3962.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3962,432,0 chrXIV 515262 . G A 4628.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.1829;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=24.10;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4628,501,0 chrXIV 515393 . C T 3100 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=9.0489;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.13;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3133,351,0 chrXIV 515474 . A T 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=114;Dels=0.00;FS=2.672;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=-0.788;QD=20.90;ReadPosRankSum=2.385;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2416,258,0 chrXIV 515478 . C A 2313 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=21.42;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2346,258,0 chrXIV 515537 . C T 2057 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.65;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2090,237,0 chrXIV 515602 . C T 2186 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.18;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2219,243,0 chrXIV 515604 . T A 2128 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.9348;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=19.17;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2161,246,0 chrXIV 515750 . G A 2699 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=132.0442;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=18.11;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2732,297,0 chrXIV 516034 . A G 4503.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=16.3151;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=1;QD=21.44;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4503,507,0 chrXIV 516367 . C T 3895.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.2581;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.13;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3895,423,0 chrXIV 516484 . G A 4962.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.19;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4962,564,0 chrXIV 516536 . C T 4687.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.3414;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.91;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4687,513,0 chrXIV 516709 . A G 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.0984;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-2.115;QD=20.45;ReadPosRankSum=2.416;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3060,345,0 chrXIV 516731 . T A 2803 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=19.88;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2836,318,0 chrXIV 516754 . G A 2842 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.53;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2875,315,0 chrXIV 516881 . A G 951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=58;Dels=0.00;FS=4.771;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.699;QD=16.40;ReadPosRankSum=1.672;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:99:984,111,0 chrXIV 516960 . C T 1717 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.18;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1750,195,0 chrXIV 517023 . G A 1419 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.18;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1452,165,0 chrXIV 517494 . A G 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=158;Dels=0.00;FS=13.433;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.516;QD=22.09;ReadPosRankSum=2.943;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3490,387,0 chrXIV 517634 . G A 4013.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.54;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4013,453,0 chrXIV 517911 . T C 2480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=134;Dels=0.00;FS=6.188;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-0.605;QD=18.51;ReadPosRankSum=2.412;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2513,279,0 chrXIV 518147 . A G 4655.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.69;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4655,531,0 chrXIV 518162 . A G 4360.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=19.91;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:4360,507,0 chrXIV 518600 . T C 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=214;Dels=0.00;FS=3.009;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.599;QD=18.64;ReadPosRankSum=2.403;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:2,209:214:99:3988,456,0 chrXIV 518602 . G T 4125.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=19.19;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4125,450,0 chrXIV 518686 . G A 5832.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=14.3017;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.46;SB=-3.215e+03 GT:AD:DP:GQ:PL 1/1:0,283:285:99:5832,633,0 chrXIV 518907 . C T 4396.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.5434;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.54;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4396,469,0 chrXIV 519058 . T C 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;MQRankSum=1.237;QD=20.86;ReadPosRankSum=1.685;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3120,366,0 chrXIV 519077 . G A 2670 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=20.70;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2703,300,0 chrXIV 519163 . T A 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=39.15;MQ0=1;MQRankSum=2.219;QD=2.20;ReadPosRankSum=-2.219;SB=-6.536e-03 GT:AD:DP:GQ:PL 0/1:5,5:10:51:52,0,51 chrXIV 519164 . G C 59.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=1;QD=9.92;SB=-2.455e+01 GT:AD:DP:GQ:PL 1/1:1,4:6:12:92,12,0 chrXIV 519165 . T A 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=1;QD=10.25;SB=-2.655e+01 GT:AD:DP:GQ:PL 1/1:1,4:6:12:94,12,0 chrXIV 519166 . T C 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.46;MQ0=1;QD=13.30;SB=-2.455e+01 GT:AD:DP:GQ:PL 1/1:1,4:5:12:99,12,0 chrXIV 523359 . T C 58.51 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.59;MQ0=47;QD=0.86;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:47,21:68:12:91,12,0 chrXIV 523360 . A G 57.51 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.87;MQ0=44;QD=0.88;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:44,21:65:12:90,12,0 chrXIV 523374 . C T 217 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.73;MQ0=34;QD=2.28;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:34,61:95:30:250,30,0 chrXIV 523377 . T G 232 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.09;MQ0=31;MQRankSum=1.098;QD=2.27;ReadPosRankSum=1.683;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:32,70:102:33:265,33,0 chrXIV 523383 . C T 292 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.43;MQ0=21;QD=2.70;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:21,87:108:39:325,39,0 chrXIV 523389 . C T 420 filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=18;QD=3.44;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:18,104:122:54:453,54,0 chrXIV 523401 . T C 510 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.064;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=24.28;MQ0=10;MQRankSum=0.560;QD=2.87;ReadPosRankSum=4.150;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:16,162:178:69:543,69,0 chrXIV 523404 . C T 550 filter AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=24.62;MQ0=7;QD=3.02;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:7,175:182:72:583,72,0 chrXIV 523413 . C T 776 filter AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=25.59;MQ0=4;QD=3.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,218:222:96:809,96,0 chrXIV 523422 . G A 574.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=8.3832;MLEAC=1;MLEAF=0.500;MQ=26.35;MQ0=0;MQRankSum=-1.569;QD=2.22;ReadPosRankSum=0.278;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,172:258:99:604,0,329 chrXIV 523431 . C T 344.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=13.1152;MLEAC=1;MLEAF=0.500;MQ=26.01;MQ0=18;MQRankSum=2.574;QD=1.10;ReadPosRankSum=0.623;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:225,89:314:99:374,0,949 chrXIV 523432 . C T 358.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.970;DP=320;Dels=0.00;FS=0.000;HaplotypeScore=13.8492;MLEAC=1;MLEAF=0.500;MQ=25.97;MQ0=20;MQRankSum=2.626;QD=1.12;ReadPosRankSum=0.600;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:231,89:320:99:388,0,978 chrXIV 523434 . G A 332.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.345;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=11.4832;MLEAC=1;MLEAF=0.500;MQ=25.87;MQ0=24;MQRankSum=2.189;QD=1.01;ReadPosRankSum=1.006;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:242,88:330:99:362,0,984 chrXIV 523450 . A G 879.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.004;DP=372;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=1;MLEAF=0.500;MQ=25.50;MQ0=41;MQRankSum=4.541;QD=2.36;ReadPosRankSum=0.699;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,250:372:99:909,0,806 chrXIV 523453 . A G 926.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;DP=374;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=25.36;MQ0=45;MQRankSum=4.270;QD=2.48;ReadPosRankSum=1.329;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:127,246:374:99:956,0,770 chrXIV 523457 . A C 870.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.565;DP=378;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=1;MLEAF=0.500;MQ=25.19;MQ0=50;MQRankSum=4.104;QD=2.30;ReadPosRankSum=1.853;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,240:378:99:900,0,855 chrXIV 523460 . A T 873.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.381;DP=363;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=1;MLEAF=0.500;MQ=25.21;MQ0=52;MQRankSum=2.675;QD=2.40;ReadPosRankSum=2.884;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,225:363:99:903,0,873 chrXIV 523461 . T C 839.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=1;MLEAF=0.500;MQ=25.31;MQ0=52;MQRankSum=3.146;QD=2.32;ReadPosRankSum=2.619;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:137,225:362:99:869,0,957 chrXIV 523488 . A G 660.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.850;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=5.3281;MLEAC=1;MLEAF=0.500;MQ=23.73;MQ0=88;MQRankSum=-0.589;QD=1.94;ReadPosRankSum=-1.732;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,188:340:99:690,0,1032 chrXIV 523491 . T C 667.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.148;DP=327;Dels=0.00;FS=0.000;HaplotypeScore=5.1611;MLEAC=1;MLEAF=0.500;MQ=23.47;MQ0=91;MQRankSum=2.151;QD=2.04;ReadPosRankSum=-1.902;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:151,176:327:99:697,0,993 chrXIV 523494 . G C 597.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=4.1687;MLEAC=1;MLEAF=0.500;MQ=23.13;MQ0=95;MQRankSum=2.606;QD=1.88;ReadPosRankSum=-1.407;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:153,164:317:99:627,0,958 chrXIV 523500 . A G 491.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.704;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=4.0930;MLEAC=1;MLEAF=0.500;MQ=22.62;MQ0=95;MQRankSum=-0.963;QD=1.70;ReadPosRankSum=-0.794;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,141:288:99:521,0,980 chrXIV 523560 . G A 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.033;DP=63;Dels=0.00;FS=1.690;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.71;MQ0=36;MQRankSum=-0.073;QD=1.08;ReadPosRankSum=-1.092;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:49,14:63:98:98,0,185 chrXIV 523571 . A G 533.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.67;MQ0=20;MQRankSum=2.277;QD=7.30;ReadPosRankSum=-3.129;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:36,37:73:99:563,0,209 chrXIV 523587 . T A 108.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.56;MQ0=0;MQRankSum=-4.105;QD=1.24;ReadPosRankSum=5.219;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,17:87:99:138,0,1289 chrXIV 523602 . T A 763.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.52;MQ0=0;MQRankSum=-4.940;QD=4.51;ReadPosRankSum=-1.668;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,57:169:99:793,0,2101 chrXIV 523604 . C T 2036.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.628;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.93;MQ0=0;MQRankSum=3.646;QD=11.07;ReadPosRankSum=2.351;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:65,119:184:99:2066,0,902 chrXIV 523605 . A G 953.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.476;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.05;MQ0=0;MQRankSum=-4.157;QD=4.99;ReadPosRankSum=-2.677;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,69:191:99:983,0,2245 chrXIV 523612 . T A 2406.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.200;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.43;MQ0=0;MQRankSum=3.386;QD=11.04;ReadPosRankSum=3.711;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,135:218:99:2436,0,1166 chrXIV 523614 . T C 1266.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.831;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.61;MQ0=0;MQRankSum=-2.482;QD=5.53;ReadPosRankSum=-4.304;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,90:229:99:1296,0,2527 chrXIV 523619 . C T 2668.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.02;MQ0=0;MQRankSum=1.381;QD=10.42;ReadPosRankSum=5.487;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,149:256:99:2698,0,1649 chrXIV 523620 . G T 1688.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.16;MQ0=0;MQRankSum=0.122;QD=6.37;ReadPosRankSum=-5.749;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,113:265:99:1718,0,2541 chrXIV 525096 . A G 1154 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.76;MQ0=0;QD=19.23;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1187,138,0 chrXIV 525101 . C T 1209 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.32;MQ0=0;QD=18.60;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1242,150,0 chrXIV 525102 . G A 1332 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.32;MQ0=0;QD=20.49;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1365,150,0 chrXIV 525141 . A G 2959 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1346;MLEAC=2;MLEAF=1.00;MQ=37.36;MQ0=0;QD=21.29;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2992,348,0 chrXIV 525249 . C A 1055 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.85;MQ0=0;QD=14.07;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1088,120,0 chrXIV 525269 . A G 354 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=57;Dels=0.00;FS=34.663;HaplotypeScore=47.5094;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;MQRankSum=0.089;QD=6.21;ReadPosRankSum=2.877;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:3,54:57:45:387,45,0 chrXIV 525271 . G A 355 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=47.6269;MLEAC=2;MLEAF=1.00;MQ=31.08;MQ0=0;QD=6.70;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:45:388,45,0 chrXIV 525274 . A G 277 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=51.5669;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;QD=4.95;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:36:310,36,0 chrXIV 525370 . C T 1522 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.9761;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=0;QD=13.35;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1555,168,0 chrXIV 525379 . A G 1581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=117;Dels=0.00;FS=3.040;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;MQRankSum=0.824;QD=13.51;ReadPosRankSum=2.407;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:3,113:117:99:1614,180,0 chrXIV 525422 . G A 2164 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;QD=17.74;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2197,234,0 chrXIV 525472 . G A 2372 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;QD=18.68;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2405,267,0 chrXIV 525522 . T C 1963 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=16.0570;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=18.01;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1996,225,0 chrXIV 525553 . C T 2027 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=14.1956;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=19.87;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2060,222,0 chrXIV 525575 . T C 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.3939;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;MQRankSum=0.487;QD=19.78;ReadPosRankSum=1.651;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2584,291,0 chrXIV 525857 . T C 3837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.736;DP=182;Dels=0.00;FS=11.976;HaplotypeScore=15.9862;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.612;QD=21.08;ReadPosRankSum=2.905;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:3,176:182:99:3837,438,0 chrXIV 525960 . T C 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=149;Dels=0.00;FS=9.482;HaplotypeScore=8.6417;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.082;QD=21.18;ReadPosRankSum=2.939;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:3189,360,0 chrXIV 526397 . G A 6781.01 PASS AC=2;AF=1.00;AN=2;DP=305;Dels=0.00;FS=0.000;HaplotypeScore=11.2614;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.23;SB=-3.035e+03 GT:AD:DP:GQ:PL 1/1:0,304:305:99:6781,747,0 chrXIV 526433 . C T 6221.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=24.3762;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.75;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,285:286:99:6221,687,0 chrXIV 526658 . G A 5080.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=19.1263;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.88;SB=-2.805e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5080,564,0 chrXIV 526700 . T C 4811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.681;DP=227;Dels=0.00;FS=12.215;HaplotypeScore=16.6194;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.394;QD=21.19;ReadPosRankSum=3.763;SB=-2.781e+03 GT:AD:DP:GQ:PL 1/1:5,222:227:99:4811,543,0 chrXIV 526742 . A T 4595.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=9.3652;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.57;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4595,501,0 chrXIV 526799 . A G 3739.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.321;DP=204;Dels=0.00;FS=13.643;HaplotypeScore=16.5651;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.818;QD=18.33;ReadPosRankSum=4.361;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:7,193:204:99:3739,432,0 chrXIV 526838 . G A 4787.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=23.0452;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.76;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4787,522,0 chrXIV 526877 . T G 4785.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=18.2176;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.46;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,210:213:99:4785,546,0 chrXIV 527003 . T C 4132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-0.858;QD=18.36;ReadPosRankSum=1.701;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:1,221:225:99:4132,480,0 chrXIV 527012 . C T 4439.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=17.0699;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=19.30;SB=-2.468e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4439,492,0 chrXIV 527048 . G T 4300.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.37;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4300,483,0 chrXIV 527087 . T C 5346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=250;Dels=0.00;FS=2.854;HaplotypeScore=12.9116;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-0.846;QD=21.38;ReadPosRankSum=2.430;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:2,246:250:99:5346,609,0 chrXIV 527207 . C A 3753.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.6991;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.07;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3753,414,0 chrXIV 527225 . C T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.7725;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=17.69;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:3431,396,0 chrXIV 527330 . A G 4412.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.11;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4412,510,0 chrXIV 527504 . G A 141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;DP=138;Dels=0.01;FS=4.046;HaplotypeScore=7.0375;MLEAC=1;MLEAF=0.500;MQ=58.48;MQ0=0;MQRankSum=-0.877;QD=1.02;ReadPosRankSum=-5.747;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,14:137:99:171,0,321 chrXIV 527510 . G A 559 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.5434;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=4.02;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:66:592,66,0 chrXIV 527794 . C T 3894.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.82;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3894,435,0 chrXIV 527858 . C T 3905.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.11;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3905,438,0 chrXIV 528074 . C T 3400.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.82;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3400,378,0 chrXIV 528195 . C T 3066 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;QD=23.95;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3099,336,0 chrXIV 528641 . C T 5114.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=16.7056;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-2.502e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5114,547,0 chrXIV 528971 . G A 3702.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.43;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3702,408,0 chrXIV 529097 . C T 4056.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=22.79;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4056,450,0 chrXIV 529112 . A G 3872.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;QD=23.19;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3872,438,0 chrXIV 529133 . A G 3694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.14;MQ0=0;MQRankSum=-1.130;QD=22.94;ReadPosRankSum=1.711;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3694,420,0 chrXIV 529136 . A G 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;MQRankSum=0.000;QD=21.48;ReadPosRankSum=1.711;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3587,417,0 chrXIV 529316 . T C 3684.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.500;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-1.268;QD=18.89;ReadPosRankSum=-0.357;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:3684,394,0 chrXIV 530148 . T C 4213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-1.732;QD=22.06;ReadPosRankSum=1.660;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4213,477,0 chrXIV 530210 . C G 4158.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.1985;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.48;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4158,483,0 chrXIV 530349 . G T 5291.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=22.51;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5291,582,0 chrXIV 530355 . G A 5138.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.77;SB=-3.012e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5138,567,0 chrXIV 530856 . A G 7251.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=307;Dels=0.00;FS=19.383;HaplotypeScore=22.0339;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.186;QD=23.62;ReadPosRankSum=2.964;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:3,299:307:99:7251,825,0 chrXIV 530890 . G A 7465.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=14.9077;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.85;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:0,310:313:99:7465,814,0 chrXIV 531399 . G A 4869.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=17.5344;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,218:221:99:4869,546,0 chrXIV 531505 . G T 5491.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.23;SB=-3.054e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:5491,595,0 chrXIV 531520 . A G 5319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=248;Dels=0.00;FS=10.552;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.482;QD=21.45;ReadPosRankSum=2.914;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:3,243:248:99:5319,609,0 chrXIV 531611 . G A 5424.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=17.5288;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.79;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:5424,588,0 chrXIV 531656 . G A 6860.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=21.8568;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.24;SB=-2.809e+03 GT:AD:DP:GQ:PL 1/1:0,280:283:99:6860,745,0 chrXIV 532165 . T C 3017 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.5974;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.86;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3050,342,0 chrXIV 532531 . C T 1430 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=21.67;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1463,159,0 chrXIV 532649 . A C 2060 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=21.24;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2093,237,0 chrXIV 532670 . G A 2491 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=22.04;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2524,276,0 chrXIV 532716 . G A 2545 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=18.71;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,132:136:99:2578,291,0 chrXIV 532717 . A C 2591 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.3108;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=18.64;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2624,297,0 chrXIV 532790 . T A 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.9102;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.313;QD=21.33;ReadPosRankSum=1.711;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3562,402,0 chrXIV 532945 . G A 3958.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.9960;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.36;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3958,429,0 chrXIV 533183 . A T 3299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.275;QD=24.08;ReadPosRankSum=1.889;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3299,363,0 chrXIV 533288 . T C 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.226;QD=23.28;ReadPosRankSum=1.631;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3223,366,0 chrXIV 533519 . A G 3147 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.12;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3180,357,0 chrXIV 533533 . A G 3141 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.66;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3174,366,0 chrXIV 533705 . T A 3288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=137;Dels=0.00;FS=4.346;HaplotypeScore=6.5780;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-1.172;QD=24.00;ReadPosRankSum=1.681;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3288,357,0 chrXIV 533746 . T C 2669 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.24;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2702,306,0 chrXIV 533821 . G C 2272 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.17;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2305,261,0 chrXIV 533912 . A G 1546 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=20.89;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1579,174,0 chrXIV 533926 . T C 1547 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=21.79;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1580,174,0 chrXIV 533937 . G A 1379 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.70;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1412,156,0 chrXIV 534210 . T C 3512.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3512,396,0 chrXIV 534658 . C T 2583 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.8448;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.52;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2616,285,0 chrXIV 534700 . G C 2193 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.58;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2226,252,0 chrXIV 534750 . C T 2511 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.5058;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.42;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2544,276,0 chrXIV 534766 . T C 2346 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.72;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2379,273,0 chrXIV 535369 . A G 2918 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.16;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2951,336,0 chrXIV 535542 . C A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.58;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3523,378,0 chrXIV 535580 . C T 2844 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.17;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2877,330,0 chrXIV 535584 . A G 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=133;Dels=0.00;FS=6.083;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-2.084;QD=20.83;ReadPosRankSum=2.887;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2803,321,0 chrXIV 535827 . T C 2588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=3.432;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.102;QD=21.75;ReadPosRankSum=1.674;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2621,297,0 chrXIV 536139 . C T 3220.05 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.7451;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.84;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3253,360,0 chrXIV 536361 . A C 2848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=169;Dels=0.00;FS=6.416;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.010;QD=16.85;ReadPosRankSum=2.304;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:2881,324,0 chrXIV 536514 . G T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3249,360,0 chrXIV 536550 . G A 3289.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3289,369,0 chrXIV 536751 . C G 2833 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2866,315,0 chrXIV 536830 . G T 2412 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.3477;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.75;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2445,264,0 chrXIV 536942 . T C 4095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.217;DP=180;Dels=0.00;FS=5.250;HaplotypeScore=9.8639;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.092;QD=22.75;ReadPosRankSum=3.382;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:4,176:180:99:4095,462,0 chrXIV 537042 . A G 2831 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.0285;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.78;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2864,327,0 chrXIV 537237 . A G 3128 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.18;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3161,351,0 chrXIV 537369 . C G 4453.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.07;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4453,507,0 chrXIV 537549 . C T 4983.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=3.5553;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=22.86;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4983,549,0 chrXIV 537552 . T G 4818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.715;DP=228;Dels=0.00;FS=15.541;HaplotypeScore=6.7954;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;MQRankSum=0.775;QD=21.13;ReadPosRankSum=3.791;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:5,222:228:99:4818,558,0 chrXIV 537637 . A G 6207.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=23.7906;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.262;QD=22.01;ReadPosRankSum=1.695;SB=-3.122e+03 GT:AD:DP:GQ:PL 1/1:1,279:282:99:6207,693,0 chrXIV 537754 . G A 4375.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=5.1497;MLEAC=2;MLEAF=1.00;MQ=42.06;MQ0=0;QD=17.71;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:4375,495,0 chrXIV 537756 . A G 4368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=245;Dels=0.00;FS=3.935;HaplotypeScore=4.3382;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;MQRankSum=-1.421;QD=17.83;ReadPosRankSum=1.661;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:4368,504,0 chrXIV 537771 . A G 4097.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=278;Dels=0.00;FS=4.115;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.66;MQ0=0;MQRankSum=-0.728;QD=14.74;ReadPosRankSum=1.720;SB=-2.686e+03 GT:AD:DP:GQ:PL 1/1:1,275:278:99:4097,474,0 chrXIV 537783 . T G 4245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=307;Dels=0.00;FS=5.339;HaplotypeScore=4.6189;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;MQRankSum=-1.539;QD=13.83;ReadPosRankSum=2.833;SB=-3.033e+03 GT:AD:DP:GQ:PL 1/1:3,304:307:99:4245,480,0 chrXIV 537806 . T C 4501.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=11.3317;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=14.61;SB=-3.124e+03 GT:AD:DP:GQ:PL 1/1:0,305:308:99:4501,501,0 chrXIV 537957 . C A 4877.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=18.76;SB=-3.038e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:4877,549,0 chrXIV 537960 . G A 5054.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=19.00;SB=-3.186e+03 GT:AD:DP:GQ:PL 1/1:0,264:266:99:5054,561,0 chrXIV 537981 . A C 5105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;MQRankSum=-0.098;QD=17.07;ReadPosRankSum=1.697;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:1,298:299:99:5105,602,0 chrXIV 538122 . A G 3937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=205;Dels=0.00;FS=2.986;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;MQRankSum=-1.204;QD=19.20;ReadPosRankSum=2.426;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:3937,444,0 chrXIV 538129 . A G 3969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;MQRankSum=-1.053;QD=19.46;ReadPosRankSum=1.715;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:3969,444,0 chrXIV 538142 . G A 3961.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=202.3978;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=18.00;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:3961,447,0 chrXIV 538315 . G A 4473.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=24.18;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4473,486,0 chrXIV 538564 . C T 4108.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.3318;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.16;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:4108,453,0 chrXIV 538640 . A G 3820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=176;Dels=0.00;FS=14.772;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.684;QD=21.70;ReadPosRankSum=2.937;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:3,172:176:99:3820,450,0 chrXIV 539561 . T C 2317 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.84;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2350,273,0 chrXIV 539576 . A T 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.384;DP=120;Dels=0.00;FS=8.791;HaplotypeScore=5.8736;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=0.548;QD=19.06;ReadPosRankSum=3.384;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:4,116:120:99:2320,252,0 chrXIV 539639 . T C 1685 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=18.52;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1718,195,0 chrXIV 539903 . C T 1840 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.22;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1873,204,0 chrXIV 539950 . A T 2748 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.69;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2781,309,0 chrXIV 540578 . G A 3346.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3346,366,0 chrXIV 540826 . T C 1909 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.75;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1942,228,0 chrXIV 540985 . G A 2239 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.95;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2272,255,0 chrXIV 540986 . T C 2262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.085;QD=22.18;ReadPosRankSum=2.401;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:2,99:102:99:2295,255,0 chrXIV 541009 . T C 2072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=0.625;QD=21.36;ReadPosRankSum=1.661;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2105,231,0 chrXIV 541100 . C T 3361.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.8040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3361,366,0 chrXIV 541168 . T C 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=134;Dels=0.00;FS=2.904;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.890;QD=21.30;ReadPosRankSum=2.413;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2887,327,0 chrXIV 541372 . A G 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.201;QD=22.56;ReadPosRankSum=1.640;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3384,381,0 chrXIV 541405 . C G 3143 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3176,363,0 chrXIV 541534 . A G 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.052;DP=170;Dels=0.00;FS=2.754;HaplotypeScore=23.3868;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=0.625;QD=19.25;ReadPosRankSum=2.391;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:2,165:170:99:3272,375,0 chrXIV 541561 . T A 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=160;Dels=0.00;FS=2.702;HaplotypeScore=8.9388;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-0.733;QD=22.43;ReadPosRankSum=-0.039;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3589,390,0 chrXIV 541746 . G A 4237.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=4.7299;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=18.75;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4237,462,0 chrXIV 541750 . T C 4081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=233;Dels=0.00;FS=5.252;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-0.073;QD=17.52;ReadPosRankSum=2.944;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:3,230:233:99:4081,462,0 chrXIV 541938 . G T 5094.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=16.7122;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.06;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:5094,567,0 chrXIV 542443 . C T 4090.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.8747;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.85;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4090,465,0 chrXIV 542524 . A G 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=-0.117;QD=18.84;ReadPosRankSum=1.674;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3373,375,0 chrXIV 542525 . C T 3357.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=18.75;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3357,378,0 chrXIV 542570 . G A 3401.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=5.0622;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=16.20;SB=-2.764e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:3401,366,0 chrXIV 542576 . T C 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=217;Dels=0.00;FS=6.053;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=-1.211;QD=15.16;ReadPosRankSum=2.939;SB=-2.719e+03 GT:AD:DP:GQ:PL 1/1:3,211:217:99:3289,366,0 chrXIV 542870 . T C 3913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=203;Dels=0.00;FS=9.569;HaplotypeScore=23.9625;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.854;QD=19.28;ReadPosRankSum=2.965;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:3,196:203:99:3913,447,0 chrXIV 543016 . G A 4187.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4187,462,0 chrXIV 543145 . A G 3777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=176;Dels=0.00;FS=5.457;HaplotypeScore=7.3243;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.206;QD=21.46;ReadPosRankSum=2.892;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:3777,429,0 chrXIV 543719 . T C 3596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=3.220;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.000;QD=21.15;ReadPosRankSum=1.691;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3596,402,0 chrXIV 543829 . A T 3856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=173;Dels=0.00;FS=3.671;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.467;QD=22.29;ReadPosRankSum=1.671;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3856,426,0 chrXIV 545273 . T C 2578 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.48;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2611,294,0 chrXIV 545721 . C T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6791;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.86;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3301,369,0 chrXIV 546129 . C A 4792.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.38;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4792,546,0 chrXIV 546188 . A G 4154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=175;Dels=0.00;FS=3.163;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.060;QD=23.74;ReadPosRankSum=1.712;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4154,471,0 chrXIV 546553 . C T 3386.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=22.88;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,143:148:99:3386,360,0 chrXIV 546989 . A C 296 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=25;Dels=0.00;FS=13.617;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=18.68;MQ0=2;MQRankSum=-1.734;QD=11.84;ReadPosRankSum=-1.734;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,22:25:39:329,39,0 chrXIV 547068 . T G 95.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;DP=20;Dels=0.00;FS=48.784;HaplotypeScore=9.8912;MLEAC=1;MLEAF=0.500;MQ=24.29;MQ0=1;MQRankSum=-3.674;QD=4.75;ReadPosRankSum=2.601;SB=-2.881e+00 GT:AD:DP:GQ:PL 0/1:12,8:20:99:125,0,101 chrXIV 547069 . A C 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;DP=21;Dels=0.00;FS=28.597;HaplotypeScore=9.8912;MLEAC=1;MLEAF=0.500;MQ=24.33;MQ0=1;MQRankSum=2.355;QD=2.24;ReadPosRankSum=-0.988;SB=-6.476e-03 GT:AD:DP:GQ:PL 0/1:12,9:21:77:77,0,150 chrXIV 547766 . A T 2268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.051;QD=18.74;ReadPosRankSum=1.673;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2301,249,0 chrXIV 548202 . A G 4179.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.84;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4179,471,0 chrXIV 548516 . T C 4100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.969;DP=194;Dels=0.00;FS=15.309;HaplotypeScore=20.4168;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.835;QD=21.13;ReadPosRankSum=4.117;SB=-2.272e+03 GT:AD:DP:GQ:PL 1/1:6,187:194:99:4100,468,0 chrXIV 549318 . C G 3396.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3396,396,0 chrXIV 551430 . C T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.08;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3346,372,0 chrXIV 551646 . C T 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.3371;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.064;QD=21.99;ReadPosRankSum=0.099;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:3177,348,0 chrXIV 552035 . C G 3686.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.6945;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.63;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3686,411,0 chrXIV 552403 . G A 3052 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.12;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3085,345,0 chrXIV 552429 . G A 3413.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.55;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3413,372,0 chrXIV 552569 . A T 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.523;QD=23.71;ReadPosRankSum=1.601;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2546,285,0 chrXIV 552682 . G A 3730.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.3336;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.44;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3730,420,0 chrXIV 552709 . G A 4182.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.98;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,178:182:99:4182,456,0 chrXIV 553142 . A T 3682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.308;QD=22.45;ReadPosRankSum=1.690;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3682,399,0 chrXIV 553624 . A G 5125.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=16.2973;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.88;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5125,576,0 chrXIV 554217 . T C 2111 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=12.5206;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.30;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2144,243,0 chrXIV 554486 . T C 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.054;QD=24.66;ReadPosRankSum=1.651;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3189,360,0 chrXIV 555245 . T C 4742.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=15.0719;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.91;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4742,522,0 chrXIV 555304 . A C 4113.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.37;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4113,465,0 chrXIV 555551 . T C 4049.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.4637;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.14;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4049,459,0 chrXIV 555641 . T C 2709 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.02;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2742,306,0 chrXIV 555698 . T C 3024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=4.163;HaplotypeScore=9.4463;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.315;QD=22.74;ReadPosRankSum=1.680;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3057,339,0 chrXIV 555760 . C T 2522 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.93;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2555,288,0 chrXIV 556301 . C T 4225.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.34;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4225,456,0 chrXIV 556380 . T C 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=180;Dels=0.00;FS=2.579;HaplotypeScore=15.6875;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.151;QD=21.71;ReadPosRankSum=2.961;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:3908,438,0 chrXIV 556914 . A T 3684.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.9783;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;QD=23.32;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3684,399,0 chrXIV 556974 . T C 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=149;Dels=0.02;FS=3.650;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;MQRankSum=-0.119;QD=23.30;ReadPosRankSum=1.685;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3472,387,0 chrXIV 557562 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.18;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3291,366,0 chrXIV 557625 . G A 2675 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.86;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2708,297,0 chrXIV 557698 . G A 2411 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2444,267,0 chrXIV 557959 . G A 3506.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.5115;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.18;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3506,384,0 chrXIV 558019 . T C 4336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.518;DP=185;Dels=0.00;FS=2.323;HaplotypeScore=13.1258;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.868;QD=23.44;ReadPosRankSum=3.755;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:5,180:185:99:4336,486,0 chrXIV 558085 . G A 8152.01 PASS AC=2;AF=1.00;AN=2;DP=342;Dels=0.00;FS=0.000;HaplotypeScore=17.6465;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.84;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,342:342:99:8152,933,0 chrXIV 558565 . C T 4153.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.29;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4153,450,0 chrXIV 558811 . G A 4025.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.74;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4025,453,0 chrXIV 559022 . A G 3475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=163;Dels=0.00;FS=2.606;HaplotypeScore=10.2149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.265;QD=21.32;ReadPosRankSum=2.389;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3475,387,0 chrXIV 559202 . C T 1944 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=23.71;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1977,216,0 chrXIV 559430 . T A 2608 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=13.73;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,184:190:99:2641,306,0 chrXIV 559455 . A G 2196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=192;Dels=0.00;FS=5.843;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;MQRankSum=-0.758;QD=11.44;ReadPosRankSum=1.714;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:2229,255,0 chrXIV 559472 . T C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=188;Dels=0.00;FS=2.579;HaplotypeScore=174.8104;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;MQRankSum=-1.829;QD=0.08;ReadPosRankSum=2.952;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:6:47,6,0 chrXIV 559694 . G T 4493.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=21.92;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4493,483,0 chrXIV 559885 . C T 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.9062;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.711;QD=21.53;ReadPosRankSum=-1.131;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3724,401,0 chrXIV 559921 . G A 3797.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.95;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3797,414,0 chrXIV 560119 . A G 4831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.745;DP=210;Dels=0.00;FS=11.814;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.995;QD=23.00;ReadPosRankSum=2.966;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:3,206:210:99:4831,546,0 chrXIV 560302 . A G 4401.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.57;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4401,492,0 chrXIV 560308 . T A 4474.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.1346;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.04;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4474,495,0 chrXIV 560362 . C T 4254.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.6040;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.39;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4254,465,0 chrXIV 560592 . A G 2160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.424;HaplotypeScore=96.5948;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;MQRankSum=0.930;QD=17.85;ReadPosRankSum=1.675;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2193,258,0 chrXIV 560611 . T C 2145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=121.4800;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;MQRankSum=-1.807;QD=15.21;ReadPosRankSum=1.507;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:2178,249,0 chrXIV 560653 . C T 3299.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=18.03;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3299,357,0 chrXIV 560671 . A G 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=181;Dels=0.00;FS=7.368;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;MQRankSum=0.096;QD=16.22;ReadPosRankSum=1.713;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,179:181:99:2969,336,0 chrXIV 560791 . A G 39.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.066;DP=182;Dels=0.00;FS=3.311;HaplotypeScore=42.0640;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=4.665;QD=0.22;ReadPosRankSum=1.459;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:41,140:182:9:72,9,0 chrXIV 560883 . T C 5329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=241;Dels=0.00;FS=4.845;HaplotypeScore=14.5186;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=-1.630;QD=22.11;ReadPosRankSum=1.703;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:1,237:241:99:5329,612,0 chrXIV 561044 . G A 3134 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.39;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3167,342,0 chrXIV 561323 . G A 2562 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.2207;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2595,291,0 chrXIV 561771 . T C 4249.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=201;Dels=0.00;FS=5.463;HaplotypeScore=14.1292;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=3;MQRankSum=1.697;QD=21.14;ReadPosRankSum=1.679;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4249,474,0 chrXIV 562037 . A G 140.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.668;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8047;MLEAC=2;MLEAF=1.00;MQ=12.87;MQ0=17;MQRankSum=-1.203;QD=2.37;ReadPosRankSum=1.203;SB=-7.243e+01 GT:AD:DP:GQ:PL 1/1:1,28:59:21:173,21,0 chrXIV 562079 . A G 166.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.273;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=4.4482;MLEAC=2;MLEAF=1.00;MQ=7.16;MQ0=179;MQRankSum=0.730;QD=0.63;ReadPosRankSum=-0.104;SB=-7.691e+01 GT:AD:DP:GQ:PL 1/1:3,259:262:24:199,24,0 chrXIV 567792 . T C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.97;MQ0=8;QD=2.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,4:10:6:52,6,0 chrXIV 567994 . A G 162.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.002;DP=81;Dels=0.02;FS=0.000;HaplotypeScore=19.2698;MLEAC=1;MLEAF=0.500;MQ=30.96;MQ0=3;MQRankSum=3.589;QD=2.00;ReadPosRankSum=4.647;SB=-3.377e-02 GT:AD:DP:GQ:PL 0/1:70,9:79:19:192,0,19 chrXIV 568001 . T C 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.348;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=18.4637;MLEAC=1;MLEAF=0.500;MQ=32.99;MQ0=1;MQRankSum=2.544;QD=0.27;ReadPosRankSum=-3.356;SB=-2.985e+00 GT:AD:DP:GQ:PL 0/1:72,4:78:51:51,0,131 chrXIV 568534 . G A 2780 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=19.86;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2813,318,0 chrXIV 568547 . A G 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.8468;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.783;QD=20.34;ReadPosRankSum=1.681;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2799,324,0 chrXIV 568887 . A G 3191 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.13;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3224,381,0 chrXIV 568967 . A G 4398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=203;Dels=0.00;FS=6.265;HaplotypeScore=14.3444;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.278;QD=21.67;ReadPosRankSum=2.425;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:2,197:203:99:4398,504,0 chrXIV 569942 . C T 1006 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=42.81;MQ0=9;QD=14.58;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1039,114,0 chrXIV 569961 . G C 874 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.9849;MLEAC=2;MLEAF=1.00;MQ=41.04;MQ0=5;QD=13.66;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,63:64:99:907,102,0 chrXIV 569965 . C A 900 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.3509;MLEAC=2;MLEAF=1.00;MQ=41.73;MQ0=5;QD=13.04;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:933,105,0 chrXIV 570002 . G A 1999 filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=37.80;MQ0=16;QD=16.80;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2032,222,0 chrXIV 570020 . C T 1678 filter AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.85;MQ0=14;QD=14.98;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1711,189,0 chrXIV 570034 . C A 1615 filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.62;MQ0=17;QD=14.55;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1648,177,0 chrXIV 570167 . T C 146.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.733;DP=28;Dels=0.00;FS=16.532;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.21;MQ0=18;MQRankSum=1.733;QD=5.22;ReadPosRankSum=0.898;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:2,26:28:21:179,21,0 chrXIV 570249 . G A 330.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;DP=84;Dels=0.00;FS=3.096;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=22.76;MQ0=36;MQRankSum=-0.248;QD=3.93;ReadPosRankSum=-0.660;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,37:84:99:360,0,461 chrXIV 570276 . A G 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=22.52;MQ0=20;MQRankSum=-0.439;QD=1.36;ReadPosRankSum=0.673;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,17:44:90:90,0,226 chrXIV 570409 . T C 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.589;DP=53;Dels=0.00;FS=14.472;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=7.96;MQ0=45;MQRankSum=0.572;QD=0.60;ReadPosRankSum=-1.589;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:28,25:53:38:62,0,38 chrXIV 570447 . G A 110.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;DP=67;Dels=0.00;FS=24.031;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.65;MQ0=44;MQRankSum=-1.691;QD=1.64;ReadPosRankSum=-0.927;SB=-2.886e+00 GT:AD:DP:GQ:PL 0/1:26,41:67:27:140,0,27 chrXIV 570461 . G A 102.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;DP=65;Dels=0.00;FS=25.453;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.99;MQ0=37;MQRankSum=-1.435;QD=1.57;ReadPosRankSum=0.417;SB=-2.885e+00 GT:AD:DP:GQ:PL 0/1:23,42:65:28:132,0,28 chrXIV 570509 . T C 295 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.98;MQ0=18;QD=6.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:46:36:328,36,0 chrXIV 570574 . G A 829 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=22.31;MQ0=23;QD=14.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:58:96:862,96,0 chrXIV 570740 . T C 1016 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.168;DP=81;Dels=0.00;FS=7.539;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=15;MQRankSum=-1.216;QD=12.54;ReadPosRankSum=1.739;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:95:1049,95,0 chrXIV 570750 . A G 1196 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.16;MQ0=15;MQRankSum=-0.997;QD=14.59;ReadPosRankSum=1.680;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1229,138,0 chrXIV 570761 . C T 1675 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.16;MQ0=9;QD=17.63;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1708,189,0 chrXIV 570872 . G T 1232 filter AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=22.36;MQ0=54;QD=7.75;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:1265,144,0 chrXIV 570935 . C T 2240 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=25.02;MQ0=7;QD=7.80;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,286:287:99:2273,249,0 chrXIV 570936 . G C 2065 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=6;QD=7.25;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,284:285:99:2098,243,0 chrXIV 570941 . T C 1987 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.193;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=7.1293;MLEAC=2;MLEAF=1.00;MQ=25.48;MQ0=5;MQRankSum=-3.736;QD=6.25;ReadPosRankSum=4.193;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:6,311:318:99:2020,225,0 chrXIV 570951 . A G 494.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-11.206;DP=338;Dels=0.00;FS=111.466;HaplotypeScore=17.5636;MLEAC=1;MLEAF=0.500;MQ=28.19;MQ0=0;MQRankSum=-3.564;QD=1.46;ReadPosRankSum=0.996;SB=-1.590e+02 GT:AD:DP:GQ:PL 0/1:162,174:338:99:524,0,1484 chrXIV 570960 . C T 2690 filter AC=2;AF=1.00;AN=2;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=5.2551;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=5;QD=8.01;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,336:336:99:2723,297,0 chrXIV 570986 . T C 3065 filter AC=2;AF=1.00;AN=2;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=16.2725;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=26;QD=8.88;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,344:345:99:3098,348,0 chrXIV 571049 . G A 2114 filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.32;MQ0=42;QD=15.89;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2147,231,0 chrXIV 571276 . T C 207.01 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=5;QD=9.86;SB=-2.272e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:27:240,27,0 chrXIV 571751 . G A 1336.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.664;DP=207;Dels=0.00;FS=9.642;HaplotypeScore=3.5285;MLEAC=1;MLEAF=0.500;MQ=31.13;MQ0=30;MQRankSum=-2.243;QD=6.45;ReadPosRankSum=1.389;SB=-6.770e+02 GT:AD:DP:GQ:PL 0/1:111,95:207:99:1366,0,1973 chrXIV 571766 . C T 1311.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730;DP=202;Dels=0.00;FS=11.620;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=34.50;MQ0=6;MQRankSum=-3.540;QD=6.49;ReadPosRankSum=1.684;SB=-7.360e+02 GT:AD:DP:GQ:PL 0/1:118,84:202:99:1341,0,2186 chrXIV 571793 . A G 871.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;DP=190;Dels=0.00;FS=33.863;HaplotypeScore=6.5742;MLEAC=1;MLEAF=0.500;MQ=37.62;MQ0=4;MQRankSum=-4.136;QD=4.58;ReadPosRankSum=0.269;SB=-4.210e+02 GT:AD:DP:GQ:PL 0/1:130,60:190:99:901,0,2447 chrXIV 572008 . G A 408 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.89;MQ0=24;QD=10.20;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:48:441,48,0 chrXIV 572086 . C G 147.06 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.98;MQ0=32;QD=3.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:21:180,21,0 chrXIV 572096 . C T 450 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.24;MQ0=38;QD=7.03;SB=-6.534e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:57:483,57,0 chrXIV 572097 . C A 480 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.73;MQ0=38;QD=7.06;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:0,66:68:57:513,57,0 chrXIV 572166 . T C 1588 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=110;Dels=0.00;FS=2.606;HaplotypeScore=7.6998;MLEAC=2;MLEAF=1.00;MQ=40.73;MQ0=13;MQRankSum=1.302;QD=14.44;ReadPosRankSum=2.928;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:3,107:110:99:1621,180,0 chrXIV 572190 . A G 1175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=87;Dels=0.00;FS=19.198;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;MQRankSum=-0.297;QD=13.51;ReadPosRankSum=2.308;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1208,138,0 chrXIV 572195 . C T 1083 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;QD=14.06;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1116,120,0 chrXIV 572219 . G A 335 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.19;MQ0=0;QD=4.65;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:39:368,39,0 chrXIV 572224 . G A 245 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=1;QD=3.40;SB=-5.602e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:30:278,30,0 chrXIV 572237 . G A 269 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.20;MQ0=1;QD=3.24;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,81:83:36:302,36,0 chrXIV 572253 . C T 615 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=35.60;MQ0=6;QD=6.47;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:72:648,72,0 chrXIV 572323 . G A 2179 filter AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=42.35;MQ0=36;QD=15.45;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2212,243,0 chrXIV 572597 . T C 2683 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=153;Dels=0.00;FS=3.222;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=25;MQRankSum=0.247;QD=17.54;ReadPosRankSum=1.650;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:2716,303,0 chrXIV 572600 . A G 2619 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=151;Dels=0.00;FS=3.027;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=25;MQRankSum=-0.744;QD=17.34;ReadPosRankSum=2.410;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:2652,303,0 chrXIV 572643 . A G 1384 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.149;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=23;MQRankSum=-0.736;QD=13.06;ReadPosRankSum=2.360;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1417,159,0 chrXIV 572915 . C T 268 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.04;MQ0=42;QD=4.25;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,63:63:33:301,33,0 chrXIV 572997 . T C 1111 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.97;MQ0=13;QD=15.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1144,129,0 chrXIV 572998 . C T 1083 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.33;MQ0=11;QD=15.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1116,129,0 chrXIV 573070 . T C 200.01 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=12.51;MQ0=75;QD=2.08;SB=-2.272e-02 GT:AD:DP:GQ:PL 1/1:2,93:96:27:233,27,0 chrXIV 573939 . A C 176.03 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=49.9715;MLEAC=2;MLEAF=1.00;MQ=18.02;MQ0=0;QD=2.79;SB=-4.089e-02 GT:AD:DP:GQ:PL 1/1:0,63:63:24:209,24,0 chrXIV 573972 . C T 409 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.73;MQ0=0;QD=5.76;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:48:442,48,0 chrXIV 574001 . A C 613 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=0;QD=9.58;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:72:646,72,0 chrXIV 574012 . C T 900 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.9887;MLEAC=2;MLEAF=1.00;MQ=29.15;MQ0=0;QD=13.24;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:933,102,0 chrXIV 574027 . G A 469 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=29.08;MQ0=0;QD=10.42;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:57:502,57,0 chrXIV 574033 . G A 659 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.65;MQ0=0;QD=12.67;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:75:692,75,0 chrXIV 574042 . G A 755 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=35.52;MQ0=0;QD=11.98;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:87:788,87,0 chrXIV 574150 . T C 2391 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=17.45;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2424,273,0 chrXIV 574466 . C T 2754 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.59;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2787,303,0 chrXIV 574682 . C T 4289.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4289,465,0 chrXIV 574776 . G A 3793.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.44;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3793,426,0 chrXIV 574949 . G A 3581.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3581,384,0 chrXIV 575525 . C T 3765.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.5921;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3765,423,0 chrXIV 576310 . C T 4520.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.73;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4520,498,0 chrXIV 576383 . A G 6097.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=5.1312;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.25;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,274:274:99:6097,696,0 chrXIV 576450 . C T 5138.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.9710;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.54;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5138,561,0 chrXIV 577250 . C G 3685.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.4114;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.47;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3685,435,0 chrXIV 578276 . C T 4815.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.8521;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.08;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4815,525,0 chrXIV 578355 . G T 4848.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=18.5963;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.76;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4848,534,0 chrXIV 579044 . T A 4459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=19.1409;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.624;QD=22.52;ReadPosRankSum=1.662;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4459,486,0 chrXIV 579121 . A G 4090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=192;Dels=0.00;FS=3.126;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.261;QD=21.30;ReadPosRankSum=1.641;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4090,468,0 chrXIV 581872 . C T 2857 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2890,312,0 chrXIV 582070 . T C 4176.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.770;DP=189;Dels=0.00;FS=5.879;HaplotypeScore=13.7159;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.332;QD=22.10;ReadPosRankSum=2.931;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:3,185:189:99:4176,468,0 chrXIV 582237 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=15.2435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.08;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3414,384,0 chrXIV 582726 . A G 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.886;QD=22.29;ReadPosRankSum=1.653;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3923,435,0 chrXIV 582846 . G A 3730.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3730,408,0 chrXIV 583726 . C T 2476 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.53;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2509,276,0 chrXIV 585346 . G T 2428 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2461,267,0 chrXIV 585434 . T G 2468 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.98;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2501,282,0 chrXIV 585525 . C T 2600 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.53;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2633,291,0 chrXIV 585962 . C T 3019 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.22;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3052,327,0 chrXIV 586191 . T C 2724 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.33;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2757,309,0 chrXIV 586230 . A G 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.668;QD=21.74;ReadPosRankSum=1.705;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2816,321,0 chrXIV 586248 . T C 2584 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.01;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2617,291,0 chrXIV 586276 . G A 2621 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.64;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2654,288,0 chrXIV 586472 . C T 3890.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.2262;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.94;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3890,426,0 chrXIV 586543 . G A 3882.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=21.45;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3882,438,0 chrXIV 586546 . C G 4057.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.35;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4057,444,0 chrXIV 586773 . T C 5085.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=20.42;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,244:249:99:5085,576,0 chrXIV 586790 . G A 5161.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=21.15;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5161,556,0 chrXIV 586841 . C T 2967 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=16.67;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3000,333,0 chrXIV 586843 . C G 2850 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=16.29;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2883,321,0 chrXIV 586872 . T C 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=140;Dels=0.00;FS=3.042;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.009;QD=18.44;ReadPosRankSum=2.415;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2614,288,0 chrXIV 587725 . G A 3074 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.0698;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.19;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:3107,342,0 chrXIV 588038 . G C 2761 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.0557;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.22;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2794,312,0 chrXIV 588114 . G A 2550 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.77;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2583,282,0 chrXIV 588128 . T A 2303 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.32;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2336,252,0 chrXIV 588261 . G A 3640.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.7596;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.79;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,148:153:99:3640,393,0 chrXIV 588304 . C T 4475.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=24.59;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4475,486,0 chrXIV 588503 . A G 4916.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=7.1985;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=0.811;QD=20.66;ReadPosRankSum=1.688;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:1,236:238:99:4916,552,0 chrXIV 588509 . T C 4738.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=20.60;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4738,540,0 chrXIV 588548 . T C 4246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.191;DP=222;Dels=0.00;FS=6.969;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-1.335;QD=19.13;ReadPosRankSum=2.371;SB=-2.464e+03 GT:AD:DP:GQ:PL 1/1:2,216:222:99:4246,480,0 chrXIV 588575 . C T 3582.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=19.36;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3582,399,0 chrXIV 588593 . A C 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.027;DP=179;Dels=0.00;FS=14.840;HaplotypeScore=14.9547;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-2.569;QD=17.18;ReadPosRankSum=4.155;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:6,173:179:99:3109,351,0 chrXIV 588683 . T C 3756.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=179;Dels=0.00;FS=9.180;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.597;QD=20.98;ReadPosRankSum=2.938;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:3,174:179:99:3756,429,0 chrXIV 588692 . T C 3928.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=21.23;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3928,444,0 chrXIV 588959 . T C 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=136;Dels=0.00;FS=3.041;HaplotypeScore=14.2809;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=1.157;QD=21.22;ReadPosRankSum=2.377;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2919,330,0 chrXIV 589211 . A G 4301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=213;Dels=0.00;FS=3.728;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.577;QD=20.19;ReadPosRankSum=1.699;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:1,209:213:99:4301,498,0 chrXIV 589219 . T C 3821.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=18.82;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:3821,435,0 chrXIV 589451 . T C 7485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=324;Dels=0.00;FS=2.626;HaplotypeScore=11.7890;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-1.041;QD=23.10;ReadPosRankSum=2.404;SB=-2.878e+03 GT:AD:DP:GQ:PL 1/1:2,322:324:99:7485,837,0 chrXIV 589622 . A T 6596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=19.4934;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.192;QD=22.28;ReadPosRankSum=1.662;SB=-3.126e+03 GT:AD:DP:GQ:PL 1/1:1,295:296:99:6596,729,0 chrXIV 589664 . A T 6751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=21.0132;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.142;QD=21.03;ReadPosRankSum=1.721;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:1,320:321:99:6751,741,0 chrXIV 589772 . G A 7555.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=26.9380;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.68;SB=-3.899e+03 GT:AD:DP:GQ:PL 1/1:0,318:319:99:7555,814,0 chrXIV 589843 . A G 5479.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=20.0622;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.27;SB=-2.680e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5479,612,0 chrXIV 589946 . A T 6821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=292;Dels=0.00;FS=6.590;HaplotypeScore=16.8851;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.634;QD=23.36;ReadPosRankSum=2.399;SB=-3.516e+03 GT:AD:DP:GQ:PL 1/1:2,290:292:99:6821,750,0 chrXIV 590060 . G A 7384.01 PASS AC=2;AF=1.00;AN=2;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=22.1748;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.82;SB=-4.036e+03 GT:AD:DP:GQ:PL 1/1:0,306:310:99:7384,802,0 chrXIV 590158 . G A 5640.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=19.6799;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.89;SB=-3.143e+03 GT:AD:DP:GQ:PL 1/1:0,267:270:99:5640,615,0 chrXIV 591529 . T G 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.039;QD=22.80;ReadPosRankSum=1.270;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3111,357,0 chrXIV 591677 . G C 3898.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.54;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3898,435,0 chrXIV 592909 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.78;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3349,372,0 chrXIV 593099 . T C 3373.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3373,393,0 chrXIV 595549 . A T 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=152;Dels=0.00;FS=8.881;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.542;QD=23.84;ReadPosRankSum=2.417;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3623,396,0 chrXIV 598176 . C T 1705 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=20.30;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1738,189,0 chrXIV 598218 . G A 316 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.3656;MLEAC=2;MLEAF=1.00;MQ=33.23;MQ0=0;QD=4.16;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:39:349,39,0 chrXIV 598229 . T G 227 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=56.5690;MLEAC=2;MLEAF=1.00;MQ=29.79;MQ0=0;QD=3.34;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:30:260,30,0 chrXIV 598258 . G A 972 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=39.26;MQ0=0;QD=12.15;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1005,108,0 chrXIV 598272 . A G 762.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;DP=99;Dels=0.00;FS=119.084;HaplotypeScore=11.8302;MLEAC=1;MLEAF=0.500;MQ=40.78;MQ0=0;MQRankSum=-1.645;QD=7.70;ReadPosRankSum=0.123;SB=-1.780e+02 GT:AD:DP:GQ:PL 0/1:25,71:99:99:792,0,392 chrXIV 598567 . G A 595.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.152;DP=227;Dels=0.00;FS=0.771;HaplotypeScore=9.4095;MLEAC=1;MLEAF=0.500;MQ=17.82;MQ0=132;MQRankSum=-0.548;QD=2.62;ReadPosRankSum=0.170;SB=-2.330e+02 GT:AD:DP:GQ:PL 0/1:117,109:227:99:625,0,574 chrXIV 598648 . G C 3911.01 filter AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=19.90;MQ0=76;QD=15.77;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:1,242:248:99:3911,450,0 chrXIV 598711 . C T 2532.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.696;DP=296;Dels=0.00;FS=4.164;HaplotypeScore=12.7461;MLEAC=1;MLEAF=0.500;MQ=22.77;MQ0=37;MQRankSum=2.644;QD=8.55;ReadPosRankSum=-1.473;SB=-1.238e+03 GT:AD:DP:GQ:PL 0/1:145,149:296:99:2562,0,2132 chrXIV 598922 . A G 303.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=246;Dels=0.00;FS=9.680;HaplotypeScore=9.5076;MLEAC=1;MLEAF=0.500;MQ=14.66;MQ0=130;MQRankSum=-1.307;QD=1.23;ReadPosRankSum=1.648;SB=-7.901e+01 GT:AD:DP:GQ:PL 0/1:124,118:246:99:333,0,472 chrXIV 598955 . A G 297.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;DP=246;Dels=0.00;FS=2.639;HaplotypeScore=25.2265;MLEAC=1;MLEAF=0.500;MQ=15.81;MQ0=146;MQRankSum=-3.020;QD=1.21;ReadPosRankSum=0.526;SB=-2.010e+02 GT:AD:DP:GQ:PL 0/1:126,120:246:99:327,0,651 chrXIV 599099 . C A 1122.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;DP=370;Dels=0.00;FS=0.000;HaplotypeScore=15.2274;MLEAC=1;MLEAF=0.500;MQ=16.26;MQ0=139;MQRankSum=0.573;QD=3.03;ReadPosRankSum=-0.209;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:190,176:370:99:1152,0,1076 chrXIV 599159 . A G 2923 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.914;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=6.7420;MLEAC=2;MLEAF=1.00;MQ=23.87;MQ0=93;MQRankSum=-1.139;QD=11.33;ReadPosRankSum=-0.544;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:4,254:258:99:2956,293,0 chrXIV 599232 . A G 7890.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.335;DP=399;Dels=0.00;FS=0.000;HaplotypeScore=18.1649;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=14;MQRankSum=-0.314;QD=19.77;ReadPosRankSum=3.426;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:4,395:399:99:7890,906,0 chrXIV 599314 . G A 4379.01 filter AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=45;QD=16.65;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:4379,483,0 chrXIV 599441 . T C 386 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=19.07;MQ0=44;MQRankSum=-1.419;QD=4.20;ReadPosRankSum=2.244;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,90:92:48:419,48,0 chrXIV 599455 . G T 208.01 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=13.69;MQ0=36;QD=2.54;SB=-2.899e+01 GT:AD:DP:GQ:PL 1/1:0,80:82:27:241,27,0 chrXIV 600064 . T C 5174.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.948;DP=311;Dels=0.00;FS=4.625;HaplotypeScore=20.2756;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=1;MQRankSum=1.613;QD=16.64;ReadPosRankSum=4.174;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:7,303:311:99:5174,579,0 chrXIV 600101 . C T 99.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.387;DP=328;Dels=0.00;FS=113.083;HaplotypeScore=27.9153;MLEAC=1;MLEAF=0.500;MQ=45.63;MQ0=17;MQRankSum=-8.778;QD=0.30;ReadPosRankSum=-5.439;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:234,92:328:99:129,0,4543 chrXIV 600410 . G A 2826.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;DP=266;Dels=0.00;FS=113.336;HaplotypeScore=10.9029;MLEAC=1;MLEAF=0.500;MQ=29.42;MQ0=28;MQRankSum=-0.062;QD=10.62;ReadPosRankSum=-0.938;SB=-1.503e+03 GT:AD:DP:GQ:PL 0/1:94,171:266:99:2856,0,968 chrXIV 600458 . T C 1482.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;DP=166;Dels=0.00;FS=60.393;HaplotypeScore=21.2747;MLEAC=1;MLEAF=0.500;MQ=25.06;MQ0=33;MQRankSum=-1.543;QD=8.93;ReadPosRankSum=2.443;SB=-3.840e+02 GT:AD:DP:GQ:PL 0/1:48,114:166:99:1512,0,184 chrXIV 600480 . G A 1140 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.21;MQ0=34;QD=10.65;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1173,126,0 chrXIV 600485 . G A 659.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.910;DP=101;Dels=0.00;FS=11.068;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=20.04;MQ0=37;MQRankSum=-1.324;QD=6.52;ReadPosRankSum=1.624;SB=-8.303e+01 GT:AD:DP:GQ:PL 0/1:27,74:101:22:689,0,22 chrXIV 600500 . C T 383.54 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=98;Dels=0.00;FS=6.066;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.82;MQ0=56;MQRankSum=-1.416;QD=3.91;ReadPosRankSum=0.977;SB=-9.055e+01 GT:AD:DP:GQ:PL 1/1:31,67:98:4:414,4,0 chrXIV 600950 . A T 4435.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;DP=486;Dels=0.00;FS=30.041;HaplotypeScore=38.7551;MLEAC=1;MLEAF=0.500;MQ=41.19;MQ0=4;MQRankSum=0.740;QD=9.13;ReadPosRankSum=-0.183;SB=-1.956e+03 GT:AD:DP:GQ:PL 0/1:248,238:486:99:4435,0,4189 chrXIV 601112 . T G 4917.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=240;Dels=0.00;FS=32.292;HaplotypeScore=12.1454;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=12;MQRankSum=-2.439;QD=20.49;ReadPosRankSum=2.363;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:2,236:240:99:4917,552,0 chrXIV 601255 . A G 2226 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=207;Dels=0.00;FS=10.975;HaplotypeScore=12.8808;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=42;MQRankSum=-2.301;QD=10.75;ReadPosRankSum=2.390;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:2,205:207:99:2259,261,0 chrXIV 601265 . A G 2092 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=183;Dels=0.00;FS=6.491;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=26.97;MQ0=27;MQRankSum=0.600;QD=11.43;ReadPosRankSum=1.710;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:1,182:183:99:2125,249,0 chrXIV 601295 . C T 916 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=10;QD=6.45;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,138:142:99:949,114,0 chrXIV 601300 . T C 106.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520;DP=137;Dels=0.00;FS=17.116;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=23.66;MQ0=8;MQRankSum=-4.837;QD=0.77;ReadPosRankSum=0.306;SB=-5.101e+01 GT:AD:DP:GQ:PL 0/1:103,34:137:99:136,0,425 chrXIV 601305 . G C 790 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=6;QD=5.41;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:823,102,0 chrXIV 601315 . C G 1253 filter AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=25.27;MQ0=5;QD=7.33;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,171:171:99:1286,153,0 chrXIV 601316 . G A 1298 filter AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=25.22;MQ0=5;QD=7.55;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,172:172:99:1331,153,0 chrXIV 601364 . A G 2234 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=21.41;MQ0=35;MQRankSum=-1.403;QD=8.15;ReadPosRankSum=2.387;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:2,270:274:99:2267,258,0 chrXIV 601465 . G A 127.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.179;DP=255;Dels=0.00;FS=12.525;HaplotypeScore=13.6576;MLEAC=1;MLEAF=0.500;MQ=41.67;MQ0=24;MQRankSum=-6.879;QD=0.50;ReadPosRankSum=5.536;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:200,54:255:99:157,0,3391 chrXIV 601469 . C T 103.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.024;DP=252;Dels=0.00;FS=15.278;HaplotypeScore=21.5331;MLEAC=1;MLEAF=0.500;MQ=41.99;MQ0=24;MQRankSum=-6.643;QD=0.41;ReadPosRankSum=6.628;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:200,52:252:99:133,0,3312 chrXIV 601474 . T C 76.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.612;DP=257;Dels=0.00;FS=7.219;HaplotypeScore=23.1051;MLEAC=1;MLEAF=0.500;MQ=42.10;MQ0=23;MQRankSum=-4.908;QD=0.30;ReadPosRankSum=4.953;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:200,55:257:99:106,0,3452 chrXIV 601511 . A G 860.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.385;DP=287;Dels=0.00;FS=11.935;HaplotypeScore=22.1196;MLEAC=1;MLEAF=0.500;MQ=41.89;MQ0=19;MQRankSum=-2.626;QD=3.00;ReadPosRankSum=-1.982;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:185,101:287:99:890,0,2929 chrXIV 601544 . T C 588.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.656;DP=260;Dels=0.00;FS=13.450;HaplotypeScore=20.6620;MLEAC=1;MLEAF=0.500;MQ=40.77;MQ0=19;MQRankSum=1.448;QD=2.26;ReadPosRankSum=5.184;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:180,77:260:99:618,0,2993 chrXIV 601790 . C T 979.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.592;DP=269;Dels=0.00;FS=10.901;HaplotypeScore=24.1969;MLEAC=1;MLEAF=0.500;MQ=29.11;MQ0=55;MQRankSum=-2.263;QD=3.64;ReadPosRankSum=0.105;SB=-4.650e+02 GT:AD:DP:GQ:PL 0/1:167,95:269:99:1009,0,2275 chrXIV 601804 . C T 786.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.886;DP=232;Dels=0.00;FS=10.920;HaplotypeScore=19.6511;MLEAC=1;MLEAF=0.500;MQ=25.28;MQ0=61;MQRankSum=-1.320;QD=3.39;ReadPosRankSum=1.011;SB=-2.950e+02 GT:AD:DP:GQ:PL 0/1:146,86:232:99:816,0,1712 chrXIV 601842 . A G 691.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.398;DP=218;Dels=0.00;FS=2.802;HaplotypeScore=4.4135;MLEAC=1;MLEAF=0.500;MQ=22.00;MQ0=59;MQRankSum=-0.149;QD=3.17;ReadPosRankSum=0.448;SB=-3.500e+02 GT:AD:DP:GQ:PL 0/1:116,101:217:99:721,0,1121 chrXIV 601869 . T C 933.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.696;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.0167;MLEAC=1;MLEAF=0.500;MQ=26.70;MQ0=20;MQRankSum=-0.677;QD=4.07;ReadPosRankSum=0.306;SB=-4.710e+02 GT:AD:DP:GQ:PL 0/1:115,113:229:99:963,0,1730 chrXIV 601944 . C T 1942.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.250;DP=271;Dels=0.00;FS=9.781;HaplotypeScore=15.0999;MLEAC=1;MLEAF=0.500;MQ=27.37;MQ0=10;MQRankSum=0.100;QD=7.17;ReadPosRankSum=-0.259;SB=-6.810e+02 GT:AD:DP:GQ:PL 0/1:123,147:270:99:1972,0,1851 chrXIV 601975 . T C 1692.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.640;DP=254;Dels=0.00;FS=14.127;HaplotypeScore=20.7136;MLEAC=1;MLEAF=0.500;MQ=25.51;MQ0=36;MQRankSum=-0.035;QD=6.66;ReadPosRankSum=0.383;SB=-4.680e+02 GT:AD:DP:GQ:PL 0/1:120,129:254:99:1722,0,1517 chrXIV 602002 . C T 1239.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.533;DP=219;Dels=0.00;FS=9.538;HaplotypeScore=16.6951;MLEAC=1;MLEAF=0.500;MQ=24.89;MQ0=52;MQRankSum=0.225;QD=5.66;ReadPosRankSum=1.170;SB=-3.900e+02 GT:AD:DP:GQ:PL 0/1:109,107:218:99:1269,0,885 chrXIV 602249 . T G 1056 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=24.71;MQ0=14;QD=11.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1089,126,0 chrXIV 602250 . C T 1092 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.20;MQ0=14;QD=12.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:91:99:1125,126,0 chrXIV 602260 . T G 1030 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.83;MQ0=15;QD=11.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1063,120,0 chrXIV 602262 . T A 1116 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.05;MQ0=15;QD=11.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1149,126,0 chrXIV 602277 . A G 1326 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.10;MQ0=10;QD=12.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1359,153,0 chrXIV 602287 . G T 1691 filter AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=5;QD=15.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1724,192,0 chrXIV 602296 . A G 1513 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.225;DP=221;Dels=0.00;FS=595.663;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=32.56;MQ0=2;MQRankSum=-0.425;QD=6.85;ReadPosRankSum=12.058;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:115,103:221:99:1546,174,0 chrXIV 602396 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=50.0473;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=2;QD=0.24;SB=-2.118e+02 GT:AD:DP:GQ:PL 1/1:0,65:70:6:48,6,0 chrXIV 602658 . T C 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=15.4458;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.881;QD=20.60;ReadPosRankSum=1.692;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3605,405,0 chrXIV 603698 . T C 8194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=359;Dels=0.00;FS=3.186;HaplotypeScore=15.7157;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.930;QD=22.82;ReadPosRankSum=1.683;SB=-4.379e+03 GT:AD:DP:GQ:PL 1/1:1,354:359:99:8194,918,0 chrXIV 603778 . G C 6526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=289;Dels=0.00;FS=3.182;HaplotypeScore=20.9378;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.116;QD=22.58;ReadPosRankSum=1.646;SB=-3.489e+03 GT:AD:DP:GQ:PL 1/1:1,282:289:99:6526,729,0 chrXIV 604247 . G A 2587 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.90;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2620,288,0 chrXIV 604753 . C T 2923 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.3482;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2956,327,0 chrXIV 605519 . G A 2401 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2434,267,0 chrXIV 605755 . T A 242 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.783;QD=16.13;ReadPosRankSum=2.123;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,13:15:30:275,30,0 chrXIV 605778 . G A 735 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=16.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:44:87:768,87,0 chrXIV 605792 . T C 1171 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1204,135,0 chrXIV 606035 . C T 1416 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1449,156,0 chrXIV 606098 . T C 1167 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=18.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1200,132,0 chrXIV 606111 . C A 1056 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;QD=19.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1089,117,0 chrXIV 606128 . C T 848 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;QD=19.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:96:881,96,0 chrXIV 606159 . C A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=2.41;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:48,6,0 chrXIV 606283 . T C 810 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:96:843,96,0 chrXIV 606438 . C T 2318 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2351,261,0 chrXIV 606699 . A G 5685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=11.2738;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.454;QD=22.83;ReadPosRankSum=1.718;SB=-2.900e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:5685,642,0 chrXIV 606872 . G A 4458.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.63;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4458,480,0 chrXIV 606972 . A G 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=140;Dels=0.00;FS=3.075;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.535;QD=21.96;ReadPosRankSum=1.707;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,135:140:99:3108,360,0 chrXIV 607128 . C T 2668 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.17;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2701,297,0 chrXIV 607149 . T C 2671 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.64;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2704,312,0 chrXIV 607236 . G A 5253.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=13.3840;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.43;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5253,576,0 chrXIV 607386 . A G 4108.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.3472;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.82;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4108,474,0 chrXIV 607416 . C T 4316.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.4620;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.96;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4316,474,0 chrXIV 607581 . C T 6270.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=15.2078;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.88;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:6270,682,0 chrXIV 607860 . C T 5625.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.77;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,245:247:99:5625,624,0 chrXIV 607902 . G A 5748.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=20.5212;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.37;SB=-3.143e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:5748,633,0 chrXIV 607959 . T C 4016.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.90;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4016,450,0 chrXIV 608001 . C T 3111 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.57;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3144,345,0 chrXIV 608586 . T C 5192.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.6820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:5192,579,0 chrXIV 609093 . T C 3728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=3.310;HaplotypeScore=14.1267;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.522;QD=22.46;ReadPosRankSum=1.669;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3728,420,0 chrXIV 609573 . A G 1637 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8813;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1670,180,0 chrXIV 610323 . G A 2262 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.32;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2295,252,0 chrXIV 610512 . A C 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=3.132;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.810;QD=22.94;ReadPosRankSum=1.700;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2533,291,0 chrXIV 611020 . T C 3352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.250;DP=144;Dels=0.00;FS=9.216;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.120;QD=23.28;ReadPosRankSum=3.397;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:4,139:144:99:3352,381,0 chrXIV 611511 . C T 3533.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=24.37;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3533,378,0 chrXIV 611523 . G A 3123 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.39;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3156,345,0 chrXIV 611973 . G A 1915 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=17.73;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1948,213,0 chrXIV 611974 . G A 1922 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=17.96;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1955,213,0 chrXIV 612031 . A T 2290 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.45;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2323,252,0 chrXIV 613268 . G A 3995.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3995,432,0 chrXIV 613373 . C T 3959.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.85;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3959,435,0 chrXIV 613459 . A G 3717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.206;QD=23.53;ReadPosRankSum=1.688;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3717,417,0 chrXIV 614723 . G A 2824 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.24;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2857,324,0 chrXIV 614760 . T A 2818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.765;QD=21.68;ReadPosRankSum=1.678;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2851,321,0 chrXIV 614937 . A G 3117 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.9032;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.92;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3150,354,0 chrXIV 614988 . A T 2861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=135;Dels=0.00;FS=3.044;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.084;QD=21.19;ReadPosRankSum=2.412;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2894,324,0 chrXIV 615001 . T G 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=135;Dels=0.00;FS=3.042;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.229;QD=21.51;ReadPosRankSum=2.340;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2937,330,0 chrXIV 615141 . A T 3714.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.5325;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.51;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3714,405,0 chrXIV 615305 . A C 2958 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.58;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2991,339,0 chrXIV 615417 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=23.17;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3453,390,0 chrXIV 615447 . T C 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=3.643;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=0.481;QD=20.06;ReadPosRankSum=1.643;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3163,360,0 chrXIV 615459 . C T 2575 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=17.76;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2608,300,0 chrXIV 615483 . T C 2545 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.85;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2578,288,0 chrXIV 615762 . A G 3407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=155;Dels=0.00;FS=2.585;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.768;QD=21.98;ReadPosRankSum=2.914;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:3,149:155:99:3407,381,0 chrXIV 616020 . C T 2951 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2984,336,0 chrXIV 616158 . C A 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=3.005;HaplotypeScore=5.3017;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=2.192;QD=18.24;ReadPosRankSum=2.346;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2659,294,0 chrXIV 616166 . A G 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.872;DP=146;Dels=0.00;FS=1.551;HaplotypeScore=5.3017;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=0.161;QD=16.45;ReadPosRankSum=2.034;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:7,139:146:99:2435,276,0 chrXIV 616170 . T A 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0624;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-1.289;QD=17.14;ReadPosRankSum=1.680;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2415,264,0 chrXIV 616445 . G C 4308.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.93;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4308,483,0 chrXIV 616622 . G A 3550.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.5204;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.47;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3550,384,0 chrXIV 617567 . T C 2058 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.66;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2091,237,0 chrXIV 619110 . T A 267.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.694;DP=471;Dels=0.00;FS=82.784;HaplotypeScore=19.8393;MLEAC=1;MLEAF=0.500;MQ=42.30;MQ0=0;MQRankSum=-13.651;QD=0.57;ReadPosRankSum=3.283;SB=-1.375e+03 GT:AD:DP:GQ:PL 0/1:288,179:470:99:297,0,2420 chrXIV 619113 . T A 264.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.325;DP=476;Dels=0.00;FS=79.669;HaplotypeScore=22.4440;MLEAC=1;MLEAF=0.500;MQ=42.46;MQ0=0;MQRankSum=-12.177;QD=0.55;ReadPosRankSum=5.136;SB=-1.431e+03 GT:AD:DP:GQ:PL 0/1:277,190:476:99:294,0,2263 chrXIV 619117 . G T 832.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.874;DP=478;Dels=0.00;FS=79.964;HaplotypeScore=28.7144;MLEAC=1;MLEAF=0.500;MQ=42.41;MQ0=0;MQRankSum=-9.277;QD=1.74;ReadPosRankSum=6.824;SB=-1.930e+03 GT:AD:DP:GQ:PL 0/1:255,223:478:99:862,0,1644 chrXIV 619205 . C T 4693.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=16.41;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,285:286:99:4693,519,0 chrXIV 619778 . G C 2424 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2457,279,0 chrXIV 620041 . T C 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=173;Dels=0.00;FS=6.043;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.194;QD=21.82;ReadPosRankSum=2.888;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:3,169:173:99:3775,426,0 chrXIV 620369 . T G 4597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.4285;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=0.421;QD=21.38;ReadPosRankSum=1.700;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4597,528,0 chrXIV 620381 . T C 4543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=222;Dels=0.00;FS=9.391;HaplotypeScore=6.0625;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=1.750;QD=20.46;ReadPosRankSum=2.959;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:3,218:222:99:4543,510,0 chrXIV 620528 . G A 4667.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.83;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4667,537,0 chrXIV 620819 . G A 6913.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=27.5245;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.09;SB=-3.966e+03 GT:AD:DP:GQ:PL 1/1:0,313:313:99:6913,759,0 chrXIV 621080 . T C 4045.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.75;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4045,459,0 chrXIV 622219 . C T 2975 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3008,324,0 chrXIV 622639 . A G 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=155;Dels=0.00;FS=3.578;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.346;QD=19.64;ReadPosRankSum=1.687;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3077,363,0 chrXIV 622973 . A G 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=158;Dels=0.00;FS=6.503;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.812;QD=22.64;ReadPosRankSum=2.294;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3577,399,0 chrXIV 623097 . G T 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.9593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.496;QD=18.90;ReadPosRankSum=0.807;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3402,375,0 chrXIV 623393 . A G 5454.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=13.4974;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=23.31;SB=-2.446e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5454,609,0 chrXIV 623559 . T A 6040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=248;Dels=0.00;FS=3.064;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.728;QD=24.35;ReadPosRankSum=1.704;SB=-3.240e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:6040,666,0 chrXIV 623970 . A G 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.676;QD=22.32;ReadPosRankSum=1.713;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4151,480,0 chrXIV 624096 . A G 5184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.776;DP=229;Dels=0.00;FS=11.270;HaplotypeScore=16.8113;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.557;QD=22.64;ReadPosRankSum=2.934;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:3,226:229:99:5184,588,0 chrXIV 624244 . G A 5360.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.3828;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.81;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5360,585,0 chrXIV 624685 . G C 2647 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.8766;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.52;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2680,306,0 chrXIV 624862 . T C 3895.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.61;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3895,435,0 chrXIV 624946 . C T 4436.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.98;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4436,472,0 chrXIV 624957 . T C 3978.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=189;Dels=0.00;FS=2.931;HaplotypeScore=6.5927;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.058;QD=21.05;ReadPosRankSum=2.411;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:3978,444,0 chrXIV 625573 . T C 3656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=172;Dels=0.00;FS=3.663;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.926;QD=21.26;ReadPosRankSum=1.712;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3656,423,0 chrXIV 625641 . T G 3817.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.69;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3817,426,0 chrXIV 625849 . A T 2720 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.59;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2753,297,0 chrXIV 625861 . C T 2604 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.52;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2637,291,0 chrXIV 625904 . G T 2986 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.12;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3019,327,0 chrXIV 626052 . T C 2623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=116;Dels=0.00;FS=3.001;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=0.244;QD=22.61;ReadPosRankSum=2.407;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2656,309,0 chrXIV 626392 . T C 4137.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.094;DP=191;Dels=0.00;FS=5.243;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.891;QD=21.66;ReadPosRankSum=3.396;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:4,187:191:99:4137,471,0 chrXIV 626480 . C G 3722.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3722,432,0 chrXIV 626600 . T C 4248.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.90;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4248,474,0 chrXIV 627999 . C T 2545 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.24;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2578,282,0 chrXIV 628446 . C A 3942.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.18;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3942,429,0 chrXIV 628490 . T C 3554.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.21;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3554,414,0 chrXIV 628571 . A C 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=0.133;QD=22.45;ReadPosRankSum=1.708;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3244,369,0 chrXIV 628716 . G A 1833 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.63;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1866,204,0 chrXIV 628775 . A G 960 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=22.86;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:993,111,0 chrXIV 628801 . A T 392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.706;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=15.8827;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;MQRankSum=-2.008;QD=16.33;ReadPosRankSum=2.706;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:3,21:24:48:425,48,0 chrXIV 628807 . A C 96.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;MQRankSum=-0.747;QD=4.01;ReadPosRankSum=0.747;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:1,7:24:15:129,15,0 chrXIV 628827 . T C 372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-0.116;QD=12.40;ReadPosRankSum=1.617;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:48:405,48,0 chrXIV 628889 . T C 1707 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.38;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1740,195,0 chrXIV 629119 . A T 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=8.1877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.421;QD=23.60;ReadPosRankSum=1.068;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2771,306,0 chrXIV 629307 . A G 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=3.218;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.085;QD=23.65;ReadPosRankSum=1.635;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2564,291,0 chrXIV 629383 . A G 1675 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.04;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1708,189,0 chrXIV 629464 . C T 2173 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.3017;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.51;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2206,252,0 chrXIV 630600 . A G 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=119;Dels=0.00;FS=2.897;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.261;QD=22.77;ReadPosRankSum=2.387;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2743,312,0 chrXIV 631199 . G T 2618 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2651,294,0 chrXIV 631510 . T G 2520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.941;QD=19.84;ReadPosRankSum=1.705;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2553,291,0 chrXIV 631514 . T A 2299 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=18.39;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2332,261,0 chrXIV 631593 . A G 2242 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.65;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2275,255,0 chrXIV 631782 . G A 2175 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=23.14;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2208,243,0 chrXIV 631792 . T C 2003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.617;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=-0.565;QD=21.77;ReadPosRankSum=1.619;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2036,225,0 chrXIV 631841 . C T 1360 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.03;FS=0.000;HaplotypeScore=25.5326;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=15.45;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1393,156,0 chrXIV 632045 . A C 1080 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=18.95;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1113,126,0 chrXIV 632159 . A G 52.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=17.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:85,9,0 chrXIV 632161 . A G 42.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=14.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:75,9,0 chrXIV 632192 . T G 37.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.12;MQ0=0;QD=6.33;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:70,9,0 chrXIV 632210 . T C 40.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.81;MQ0=4;MQRankSum=-1.545;QD=2.41;ReadPosRankSum=2.927;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:7,10:17:9:73,9,0 chrXIV 632227 . C T 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.9667;MLEAC=1;MLEAF=0.500;MQ=24.05;MQ0=6;MQRankSum=-0.193;QD=0.77;ReadPosRankSum=-0.193;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:12,14:26:50:50,0,158 chrXIV 632231 . A G 73.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.954;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.7554;MLEAC=1;MLEAF=0.500;MQ=24.20;MQ0=7;MQRankSum=0.258;QD=2.43;ReadPosRankSum=-0.037;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,8:30:99:103,0,103 chrXIV 632235 . A C 65.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.132;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=5.9101;MLEAC=1;MLEAF=0.500;MQ=22.41;MQ0=11;MQRankSum=1.113;QD=1.71;ReadPosRankSum=0.541;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,8:38:95:95,0,121 chrXIV 632251 . G A 161.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.869;DP=54;Dels=0.00;FS=12.127;HaplotypeScore=16.4400;MLEAC=1;MLEAF=0.500;MQ=22.67;MQ0=12;MQRankSum=0.300;QD=2.98;ReadPosRankSum=-1.299;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:33,20:54:99:191,0,165 chrXIV 632262 . A T 146.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;DP=64;Dels=0.00;FS=21.969;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=21.66;MQ0=12;MQRankSum=1.842;QD=2.28;ReadPosRankSum=3.077;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,32:64:99:176,0,266 chrXIV 632493 . C G 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;DP=112;Dels=0.04;FS=7.502;HaplotypeScore=65.0251;MLEAC=1;MLEAF=0.500;MQ=36.19;MQ0=2;MQRankSum=-0.878;QD=0.41;ReadPosRankSum=-4.170;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:92,11:108:76:76,0,294 chrXIV 632558 . T C 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.8291;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.261;QD=23.35;ReadPosRankSum=1.701;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2672,306,0 chrXIV 633286 . G A 4723.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.3656;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.53;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4723,516,0 chrXIV 633299 . T C 4290.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.5349;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.07;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:4290,486,0 chrXIV 633507 . G T 4201.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.43;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4201,462,0 chrXIV 634104 . G A 5259.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=15.0153;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.48;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5259,559,0 chrXIV 634319 . T G 5277.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.08;SB=-2.516e+03 GT:AD:DP:GQ:PL 1/1:1,235:239:99:5277,585,0 chrXIV 634336 . C T 5057.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=7.0323;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.39;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5057,576,0 chrXIV 635061 . C T 2878 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.13;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2911,318,0 chrXIV 635324 . T C 3452.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.17;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3452,387,0 chrXIV 635465 . T G 4273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.7056;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.253;QD=22.49;ReadPosRankSum=1.695;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4273,474,0 chrXIV 635640 . C T 1862 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=15.78;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1895,204,0 chrXIV 635687 . A C 2164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.4418;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.431;QD=15.57;ReadPosRankSum=1.682;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2197,249,0 chrXIV 635788 . C G 1871 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.56;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1904,216,0 chrXIV 635840 . G C 1704 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.29;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1737,192,0 chrXIV 635844 . T C 1690 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.12;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1723,192,0 chrXIV 636749 . T C 2999 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3032,336,0 chrXIV 637234 . T A 2853 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2886,315,0 chrXIV 638321 . G A 4631.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=22.5753;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4631,504,0 chrXIV 638642 . C T 5808.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=12.1934;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.04;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,275:276:99:5808,642,0 chrXIV 638992 . A T 2074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=93;Dels=0.00;FS=9.738;HaplotypeScore=14.1101;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.338;QD=22.30;ReadPosRankSum=2.396;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2107,228,0 chrXIV 639053 . G A 2310 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.32;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2343,258,0 chrXIV 639314 . G A 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.064;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.590;QD=21.33;ReadPosRankSum=1.145;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3668,391,0 chrXIV 639551 . C A 3147 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3180,351,0 chrXIV 640431 . A G 3779.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=16.9942;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.36;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3779,420,0 chrXIV 640932 . T C 3872.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.624;QD=22.13;ReadPosRankSum=1.692;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3872,444,0 chrXIV 641101 . C T 4926.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.4275;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.46;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4926,540,0 chrXIV 641452 . A G 3443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=159;Dels=0.00;FS=6.675;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.502;QD=21.65;ReadPosRankSum=2.388;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3443,408,0 chrXIV 641784 . A G 4115.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=13.3302;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.32;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4115,477,0 chrXIV 641859 . G A 5162.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.3388;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.36;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5162,567,0 chrXIV 641892 . A G 4508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=213;Dels=0.00;FS=6.251;HaplotypeScore=16.5966;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.262;QD=21.16;ReadPosRankSum=2.426;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:2,209:213:99:4508,507,0 chrXIV 642812 . G C 4311.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4311,492,0 chrXIV 643151 . A G 3610.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.5771;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.75;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3610,411,0 chrXIV 643202 . T G 3796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=16.9059;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=1.525;QD=22.46;ReadPosRankSum=1.670;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3796,444,0 chrXIV 643259 . C G 3999.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.4043;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.94;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3999,459,0 chrXIV 643956 . T C 3064 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.04;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3097,348,0 chrXIV 644271 . G A 2419 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.79;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2452,267,0 chrXIV 644875 . A T 3593.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.32;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3593,399,0 chrXIV 645364 . G A 3160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=157;Dels=0.00;FS=5.119;HaplotypeScore=11.5376;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.933;QD=20.13;ReadPosRankSum=1.710;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3193,354,0 chrXIV 646157 . A T 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.5952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.254;QD=22.61;ReadPosRankSum=1.712;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3956,447,0 chrXIV 646476 . G C 3924.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=19.1726;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=16.08;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,239:244:99:3924,462,0 chrXIV 646547 . A C 3509.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=15.6897;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.289;QD=17.46;ReadPosRankSum=2.400;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:3509,396,0 chrXIV 646799 . A G 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=135;Dels=0.00;FS=8.509;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.685;QD=22.83;ReadPosRankSum=2.377;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3115,354,0 chrXIV 646869 . T G 3402.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=166;Dels=0.00;FS=2.973;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.155;QD=20.49;ReadPosRankSum=2.420;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3402,402,0 chrXIV 647017 . C T 3576.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.3079;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.84;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3576,387,0 chrXIV 647060 . T C 4187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=182;Dels=0.00;FS=3.058;HaplotypeScore=9.5801;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-1.561;QD=23.01;ReadPosRankSum=1.675;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4187,474,0 chrXIV 647100 . G A 4463.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=22.54;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4463,504,0 chrXIV 647124 . A G 3857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=183;Dels=0.00;FS=3.015;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=0.385;QD=21.08;ReadPosRankSum=2.382;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:3857,438,0 chrXIV 647126 . A G 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=186;Dels=0.00;FS=3.024;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=-0.591;QD=20.18;ReadPosRankSum=2.423;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:3753,435,0 chrXIV 647174 . G A 2739 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=19.85;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2772,303,0 chrXIV 647812 . T C 2884 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.45;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2917,327,0 chrXIV 647815 . G A 2799 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=19.04;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2832,318,0 chrXIV 647821 . A G 2777 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.388;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-1.227;QD=19.15;ReadPosRankSum=1.708;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:2810,318,0 chrXIV 647950 . C T 3695.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8794;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.69;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3695,402,0 chrXIV 648040 . C T 3338.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.25;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3338,375,0 chrXIV 648085 . T C 3523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=1.044;QD=23.33;ReadPosRankSum=1.709;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3523,399,0 chrXIV 648166 . T A 3751.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.46;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3751,414,0 chrXIV 648289 . A G 3416.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.90;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3416,390,0 chrXIV 648473 . G A 2691 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=19.93;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2724,294,0 chrXIV 648482 . A G 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=133;Dels=0.00;FS=5.906;HaplotypeScore=5.3974;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.129;QD=18.50;ReadPosRankSum=2.947;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2494,285,0 chrXIV 648754 . G A 3125 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.04;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3158,357,0 chrXIV 648908 . T C 3145 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.6599;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.30;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3178,348,0 chrXIV 648982 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.56;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3610,402,0 chrXIV 649012 . C T 3876.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.38;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3876,423,0 chrXIV 649267 . G A 5101.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=18.2748;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.99;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5101,561,0 chrXIV 649568 . G A 3938.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.46;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3938,444,0 chrXIV 650114 . G A 4604.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.0182;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4604,498,0 chrXIV 650269 . G A 4491.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.46;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4491,486,0 chrXIV 650366 . A C 5346.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=14.0847;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.91;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5346,621,0 chrXIV 650441 . C A 4674.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.91;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4674,516,0 chrXIV 650501 . A G 4661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=208;Dels=0.00;FS=3.382;HaplotypeScore=10.5761;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.448;QD=22.41;ReadPosRankSum=1.632;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:4661,528,0 chrXIV 650568 . T C 4076.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=202;Dels=0.00;FS=13.132;HaplotypeScore=12.5415;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=1.975;QD=20.18;ReadPosRankSum=2.915;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:3,198:202:99:4076,456,0 chrXIV 650627 . T C 5618.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=16.4451;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=21.78;SB=-3.148e+03 GT:AD:DP:GQ:PL 1/1:0,257:258:99:5618,636,0 chrXIV 650687 . G A 7802.01 PASS AC=2;AF=1.00;AN=2;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=26.4191;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-3.147e+03 GT:AD:DP:GQ:PL 1/1:0,337:340:99:7802,861,0 chrXIV 650816 . G A 5594.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.12;SB=-3.184e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5594,606,0 chrXIV 650921 . A G 5842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.349;DP=281;Dels=0.00;FS=2.313;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.222;QD=20.79;ReadPosRankSum=3.380;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:4,276:281:99:5842,657,0 chrXIV 651056 . G A 3414.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=18.97;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3414,375,0 chrXIV 651059 . G A 3158 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.6229;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=17.54;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3191,354,0 chrXIV 651080 . C T 2426 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=15.45;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2459,270,0 chrXIV 651098 . T C 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=172;Dels=0.00;FS=2.583;HaplotypeScore=15.5875;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-0.018;QD=16.30;ReadPosRankSum=2.912;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:2836,318,0 chrXIV 651334 . G A 4972.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=11.1223;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.52;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:4972,537,0 chrXIV 651361 . A G 5560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=273;Dels=0.00;FS=5.297;HaplotypeScore=8.9978;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=0.540;QD=20.37;ReadPosRankSum=2.974;SB=-2.688e+03 GT:AD:DP:GQ:PL 1/1:3,270:273:99:5560,627,0 chrXIV 651410 . T C 4949.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=18.82;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,263:263:99:4949,549,0 chrXIV 651420 . T C 4636.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.00;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:4636,510,0 chrXIV 651849 . C T 536 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=22.4601;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;QD=16.24;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:63:569,63,0 chrXIV 651870 . T A 64.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;DP=39;Dels=0.00;FS=6.740;HaplotypeScore=9.9290;MLEAC=1;MLEAF=0.500;MQ=35.37;MQ0=0;MQRankSum=-1.898;QD=1.64;ReadPosRankSum=-0.029;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/1:20,19:39:33:94,0,33 chrXIV 651900 . A T 445 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.65;MQ0=0;QD=12.36;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:54:478,54,0 chrXIV 651906 . A G 400 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.77;MQ0=0;QD=11.43;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:51:433,51,0 chrXIV 651954 . T A 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.236;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.01;MQ0=0;MQRankSum=-1.025;QD=0.30;ReadPosRankSum=-3.305;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:58,6:64:49:49,0,440 chrXIV 651963 . G A 430 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;QD=8.43;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:51:463,51,0 chrXIV 651964 . G A 424 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;QD=8.31;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:51:457,51,0 chrXIV 651982 . C T 410 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=50.2498;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=7.59;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:51:443,51,0 chrXIV 651983 . A T 404 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=50.2498;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=7.48;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:51:437,51,0 chrXIV 652036 . C T 376 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.35;MQ0=0;QD=7.67;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:48:409,48,0 chrXIV 652076 . G A 91.26 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=31.0575;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=0;QD=1.55;SB=-2.533e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:15:124,15,0 chrXIV 652121 . G A 1178 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.60;MQ0=0;QD=15.10;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1211,135,0 chrXIV 652238 . G A 514 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=26.59;MQ0=0;QD=15.58;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:66:547,66,0 chrXIV 652250 . C T 638 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=0;QD=17.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:78:671,78,0 chrXIV 652261 . C T 923 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.46;MQ0=0;QD=17.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:956,111,0 chrXIV 652265 . T G 1077 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=0;QD=17.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1110,132,0 chrXIV 652419 . G A 1554 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1587,180,0 chrXIV 652431 . T G 1874 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.738;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.6256;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=1.063;QD=23.14;ReadPosRankSum=2.663;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1907,207,0 chrXIV 652476 . G A 2266 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2299,258,0 chrXIV 652628 . T C 3168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.925;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.435;QD=17.70;ReadPosRankSum=1.111;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:3201,341,0 chrXIV 652651 . A T 4523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=228;Dels=0.00;FS=3.802;HaplotypeScore=6.6971;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.413;QD=19.84;ReadPosRankSum=1.671;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:4523,489,0 chrXIV 653331 . A T 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=3.133;HaplotypeScore=5.7023;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;MQRankSum=-0.217;QD=18.67;ReadPosRankSum=1.636;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2722,303,0 chrXIV 653362 . C T 2106 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=3.4991;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=13.68;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2139,246,0 chrXIV 653365 . A G 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=3.558;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;MQRankSum=-0.410;QD=14.12;ReadPosRankSum=1.687;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2179,249,0 chrXIV 653385 . T C 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=154;Dels=0.00;FS=2.933;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;MQRankSum=-0.694;QD=13.94;ReadPosRankSum=2.402;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:2180,252,0 chrXIV 653557 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=18.04;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3264,369,0 chrXIV 653560 . C T 3211.99 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=18.25;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3245,351,0 chrXIV 653593 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=17.79;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2969,336,0 chrXIV 653635 . T C 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.4527;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=0.217;QD=18.27;ReadPosRankSum=1.705;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2427,276,0 chrXIV 653665 . C T 3084 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.01;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3117,345,0 chrXIV 654040 . G C 6450.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=27.0737;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.01;SB=-3.633e+03 GT:AD:DP:GQ:PL 1/1:0,291:293:99:6450,726,0 chrXIV 654088 . A G 5729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.031;QD=21.70;ReadPosRankSum=1.706;SB=-2.969e+03 GT:AD:DP:GQ:PL 1/1:1,261:264:99:5729,645,0 chrXIV 654166 . T C 4645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=211;Dels=0.00;FS=9.379;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.751;QD=22.01;ReadPosRankSum=2.426;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:4645,525,0 chrXIV 654448 . C T 1485 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.29;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1518,177,0 chrXIV 654646 . C T 1171 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.89;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1204,132,0 chrXIV 654835 . T C 3445.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.52;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3445,399,0 chrXIV 654949 . C T 4610.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.2081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4610,504,0 chrXIV 655138 . C T 5294.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=16.0910;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.06;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:0,236:240:99:5294,579,0 chrXIV 655174 . T C 5075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.385;QD=23.28;ReadPosRankSum=1.668;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:1,215:218:99:5075,579,0 chrXIV 655315 . A G 4401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=205;Dels=0.00;FS=5.672;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.181;QD=21.47;ReadPosRankSum=2.966;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:3,202:205:99:4401,492,0 chrXIV 655324 . G A 4545.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.2304;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.44;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4545,495,0 chrXIV 655447 . G A 4121.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4121,450,0 chrXIV 655865 . T G 4714.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.93;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4714,525,0 chrXIV 655912 . C T 3887.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=20.14;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3887,441,0 chrXIV 655918 . A T 3760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=181;Dels=0.00;FS=5.672;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.728;QD=20.77;ReadPosRankSum=2.828;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:3760,420,0 chrXIV 656020 . G A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.45;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3861,429,0 chrXIV 656179 . G A 2762 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=15.8441;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.92;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2795,312,0 chrXIV 656308 . G A 3763.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.67;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3763,423,0 chrXIV 656419 . G A 3493.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.11;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3493,387,0 chrXIV 656425 . G C 3387.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.6151;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.71;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3387,378,0 chrXIV 656560 . A G 4356.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.136;QD=22.81;ReadPosRankSum=1.714;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4356,498,0 chrXIV 656734 . G A 4690.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.0114;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.99;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4690,516,0 chrXIV 656773 . A G 3960.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.8033;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.52;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3960,459,0 chrXIV 656793 . C T 3953.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.3495;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.60;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3953,441,0 chrXIV 656980 . A G 4706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=215;Dels=0.00;FS=3.198;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.504;QD=21.89;ReadPosRankSum=1.716;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:1,212:215:99:4706,543,0 chrXIV 657133 . T C 3526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=173;Dels=0.00;FS=5.057;HaplotypeScore=9.9899;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.971;QD=20.38;ReadPosRankSum=1.372;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3526,378,0 chrXIV 657202 . C A 4166.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.52;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4166,459,0 chrXIV 657349 . A G 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=4.063;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.088;QD=23.57;ReadPosRankSum=1.666;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,157:161:99:3795,429,0 chrXIV 657388 . A G 3390.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.7468;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3390,375,0 chrXIV 657477 . G A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.37;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3579,384,0 chrXIV 657496 . C T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.66;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3444,375,0 chrXIV 657606 . A C 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=148;Dels=0.00;FS=3.289;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.015;QD=20.84;ReadPosRankSum=1.684;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,144:148:99:3118,354,0 chrXIV 657861 . A G 4245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=201;Dels=0.00;FS=3.255;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=1.043;QD=21.12;ReadPosRankSum=1.715;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4245,471,0 chrXIV 657871 . C T 4318.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.37;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4318,468,0 chrXIV 657913 . C T 4638.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.5383;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=21.08;SB=-2.806e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4638,507,0 chrXIV 657946 . A G 4352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=-1.141;QD=20.53;ReadPosRankSum=1.716;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:1,211:212:99:4352,477,0 chrXIV 657952 . G A 4126.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=19.10;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4126,474,0 chrXIV 657964 . T A 4043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=215;Dels=0.00;FS=3.030;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=-0.145;QD=18.80;ReadPosRankSum=2.426;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:2,213:215:99:4043,450,0 chrXIV 658252 . A G 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.042;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.008;QD=20.53;ReadPosRankSum=2.209;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:3,118:122:99:2538,273,0 chrXIV 658306 . T A 3663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.986;QD=25.44;ReadPosRankSum=1.684;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3663,390,0 chrXIV 658444 . C A 3131 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.90;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3164,357,0 chrXIV 658624 . C T 3929.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.53;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3929,426,0 chrXIV 658675 . C T 2809 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=18.36;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2842,315,0 chrXIV 658677 . G A 2894 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=19.82;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2927,312,0 chrXIV 658861 . C T 4734.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.6854;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.87;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4734,531,0 chrXIV 658915 . A G 5125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=217;Dels=0.00;FS=3.871;HaplotypeScore=16.0217;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.631;QD=23.62;ReadPosRankSum=1.716;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:1,216:217:99:5125,582,0 chrXIV 659022 . G A 3374.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.59;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3374,372,0 chrXIV 659350 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.53;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3633,405,0 chrXIV 659362 . C T 4292.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.79;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4292,471,0 chrXIV 659467 . T C 3976.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.6648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3976,444,0 chrXIV 659794 . C T 4246.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.1361;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.23;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4246,471,0 chrXIV 659821 . A G 4349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=4.589;HaplotypeScore=6.8402;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.009;QD=23.01;ReadPosRankSum=1.677;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4349,486,0 chrXIV 659878 . G A 4157.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.6489;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.35;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4157,459,0 chrXIV 660538 . G A 3921.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.5855;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.01;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3921,456,0 chrXIV 660562 . G A 4112.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.98;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4112,474,0 chrXIV 660958 . T A 5261.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=15.0254;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.85;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:5261,594,0 chrXIV 661385 . T C 3074 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.6405;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.28;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3107,357,0 chrXIV 661906 . A G 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=175;Dels=0.00;FS=4.577;HaplotypeScore=6.8742;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=0.030;QD=20.25;ReadPosRankSum=1.692;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3543,396,0 chrXIV 661923 . G A 2984 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=17.25;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3017,345,0 chrXIV 661928 . G C 3086 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.14;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3119,351,0 chrXIV 662398 . C A 5494.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=20.8386;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.98;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:5494,606,0 chrXIV 662512 . C A 4492.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.9462;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=21.49;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4492,495,0 chrXIV 662536 . T A 4039.01 SnpCluster AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=20.71;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4039,450,0 chrXIV 662537 . G A 4179.01 SnpCluster AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=21.54;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4179,447,0 chrXIV 662540 . T C 3806.01 SnpCluster AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=19.03;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3806,447,0 chrXIV 662586 . A G 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=145;Dels=0.00;FS=2.507;HaplotypeScore=7.4282;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-0.397;QD=17.86;ReadPosRankSum=2.894;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:3,139:145:99:2622,297,0 chrXIV 662789 . A G 1651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=126;Dels=0.00;FS=9.543;HaplotypeScore=116.6617;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;MQRankSum=-0.718;QD=13.10;ReadPosRankSum=2.391;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:1684,198,0 chrXIV 662883 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.38;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3421,369,0 chrXIV 662978 . T C 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=0.521;QD=16.13;ReadPosRankSum=1.701;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:3662,426,0 chrXIV 662982 . A G 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=223;Dels=0.00;FS=4.359;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=-1.528;QD=15.70;ReadPosRankSum=1.685;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:1,220:223:99:3500,399,0 chrXIV 663098 . T C 5297.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.36;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5297,606,0 chrXIV 663494 . T C 3021 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.4460;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.05;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3054,342,0 chrXIV 663608 . C T 160.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=354.8915;MLEAC=1;MLEAF=0.500;MQ=56.73;MQ0=0;MQRankSum=0.513;QD=1.28;ReadPosRankSum=-5.508;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,19:124:99:190,0,164 chrXIV 663899 . T A 2540 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=20.16;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2573,285,0 chrXIV 663906 . G A 2259 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=18.67;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2292,252,0 chrXIV 664058 . A C 2692 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=150.6897;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=16.93;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2725,324,0 chrXIV 664095 . A G 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.094;DP=151;Dels=0.03;FS=13.807;HaplotypeScore=54.7692;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=1.759;QD=15.93;ReadPosRankSum=4.452;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:7,139:147:99:2439,282,0 chrXIV 664392 . G A 4591.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.79;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4591,495,0 chrXIV 664499 . A G 5965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.222;DP=277;Dels=0.00;FS=14.366;HaplotypeScore=29.8943;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.575;QD=21.53;ReadPosRankSum=3.411;SB=-2.854e+03 GT:AD:DP:GQ:PL 1/1:4,273:277:99:5965,678,0 chrXIV 664572 . T C 5089.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=16.6431;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.22;SB=-2.519e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:5089,576,0 chrXIV 664845 . G A 4150.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=22.31;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4150,468,0 chrXIV 664887 . A G 3523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.309;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.9392;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.423;QD=19.57;ReadPosRankSum=-1.559;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3523,379,0 chrXIV 664923 . C T 2876 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=14.5643;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.30;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,146:149:99:2909,318,0 chrXIV 664998 . A C 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=3.231;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;MQRankSum=-0.497;QD=17.79;ReadPosRankSum=1.698;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1830,207,0 chrXIV 665001 . C T 1712 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=17.12;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1745,189,0 chrXIV 665017 . C G 1554 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.38;MQ0=0;QD=16.71;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1587,180,0 chrXIV 665036 . G T 1196 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=13.59;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1229,138,0 chrXIV 665056 . T C 982 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.21;MQ0=0;QD=11.16;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1015,120,0 chrXIV 665064 . T A 982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.9510;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;MQRankSum=-1.434;QD=10.56;ReadPosRankSum=1.695;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1015,114,0 chrXIV 665097 . T A 1408 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=13.28;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1441,156,0 chrXIV 665108 . T C 1401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;MQRankSum=-1.123;QD=12.97;ReadPosRankSum=1.700;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1434,168,0 chrXIV 665283 . G A 4681.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=22.95;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4681,513,0 chrXIV 665506 . A G 4845.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=17.06;SB=-2.905e+03 GT:AD:DP:GQ:PL 1/1:0,284:284:99:4845,564,0 chrXIV 665577 . G A 6869.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=17.3195;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.88;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,329:329:99:6869,753,0 chrXIV 665889 . G A 3936.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.4427;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.24;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3936,426,0 chrXIV 665953 . C G 3145 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.7800;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=18.07;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3178,366,0 chrXIV 665969 . A C 3086 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.15;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3119,354,0 chrXIV 666127 . C T 3968.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.5563;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.68;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3968,441,0 chrXIV 666410 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=143;Dels=0.00;FS=3.072;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.024;QD=23.54;ReadPosRankSum=1.708;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3366,384,0 chrXIV 667018 . C T 3783.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.34;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3783,426,0 chrXIV 667173 . T C 1663 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.60;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1696,189,0 chrXIV 667174 . C T 1527 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.09;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1560,180,0 chrXIV 667216 . C T 1860 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1893,207,0 chrXIV 667292 . G A 1165 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1198,135,0 chrXIV 667515 . C A 1567 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=21.18;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1600,180,0 chrXIV 667530 . T A 1490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-1.687;QD=19.10;ReadPosRankSum=1.687;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1523,174,0 chrXIV 667575 . T C 2639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=151;Dels=0.00;FS=2.573;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=0.780;QD=17.48;ReadPosRankSum=2.914;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:2672,300,0 chrXIV 667587 . C A 2584 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=16.46;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:2617,291,0 chrXIV 667685 . T C 4564.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=15.8404;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.59;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4564,513,0 chrXIV 667737 . C T 4378.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.4275;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.68;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4378,474,0 chrXIV 667749 . C T 4409.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=9.3810;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=21.83;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4409,471,0 chrXIV 667971 . T A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.6734;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.92;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3494,375,0 chrXIV 668126 . T C 1303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=120;Dels=0.00;FS=4.223;HaplotypeScore=54.0145;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-0.946;QD=10.86;ReadPosRankSum=1.674;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:1336,150,0 chrXIV 668321 . G A 2692 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.61;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2725,300,0 chrXIV 668394 . T C 2771 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.48;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2804,318,0 chrXIV 668876 . G A 2725 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2758,300,0 chrXIV 669030 . T C 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.037;QD=22.70;ReadPosRankSum=1.708;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3234,363,0 chrXIV 669417 . C T 3417.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.1985;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.05;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3417,384,0 chrXIV 669563 . A G 3326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=148;Dels=0.00;FS=7.126;HaplotypeScore=9.0454;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.092;QD=22.47;ReadPosRankSum=2.416;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3326,372,0 chrXIV 669717 . T C 3619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;MQRankSum=-0.814;QD=21.80;ReadPosRankSum=1.711;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3619,408,0 chrXIV 669726 . T C 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=176;Dels=0.00;FS=3.030;HaplotypeScore=6.6898;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=0.593;QD=19.59;ReadPosRankSum=2.366;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3448,399,0 chrXIV 669924 . G A 4170.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.4116;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=21.95;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4170,456,0 chrXIV 669930 . A G 3813.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=19.86;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3813,435,0 chrXIV 669943 . T C 3801.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;QD=19.20;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3801,444,0 chrXIV 669967 . A C 4101.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=5.5678;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=17.83;SB=-2.724e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4101,477,0 chrXIV 670369 . A G 2514 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.05;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2547,282,0 chrXIV 670370 . A G 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=132;Dels=0.00;FS=9.234;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-1.423;QD=18.55;ReadPosRankSum=2.947;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:3,128:132:99:2482,276,0 chrXIV 670593 . T A 3120 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.52;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3153,342,0 chrXIV 670615 . C A 3297.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.83;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3297,360,0 chrXIV 671139 . A T 3844.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.4677;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.44;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3844,423,0 chrXIV 671188 . T C 4408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.7649;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.607;QD=22.72;ReadPosRankSum=1.607;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4408,504,0 chrXIV 671317 . A G 4129.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.8790;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.232;QD=21.17;ReadPosRankSum=1.625;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4129,471,0 chrXIV 671359 . A G 4975.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.258;DP=232;Dels=0.00;FS=7.965;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.018;QD=21.44;ReadPosRankSum=3.355;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:4,228:232:99:4975,573,0 chrXIV 671629 . G A 4176.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=22.45;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4176,465,0 chrXIV 671647 . T C 4107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=196;Dels=0.00;FS=6.314;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=1.572;QD=20.95;ReadPosRankSum=2.399;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4107,465,0 chrXIV 671825 . G A 3481.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=21.62;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3481,387,0 chrXIV 671826 . C T 3650.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=22.67;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3650,390,0 chrXIV 671854 . G A 3530.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=20.89;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3530,387,0 chrXIV 671989 . T C 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.485;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=1.159;QD=21.99;ReadPosRankSum=1.708;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3222,375,0 chrXIV 672200 . C T 2123 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.61;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2156,249,0 chrXIV 672220 . T C 2252 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.05;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2285,255,0 chrXIV 672239 . C T 2236 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.70;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2269,249,0 chrXIV 672281 . T C 1667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.463;DP=91;Dels=0.00;FS=3.208;HaplotypeScore=14.0616;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.500;QD=18.32;ReadPosRankSum=1.694;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1700,192,0 chrXIV 672334 . G T 2691 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.0332;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.42;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2724,303,0 chrXIV 672756 . C T 2912 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.80;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2945,327,0 chrXIV 672773 . G T 2825 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.93;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2858,309,0 chrXIV 673073 . A G 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=134;Dels=0.00;FS=12.490;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-0.120;QD=20.51;ReadPosRankSum=2.918;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:2781,309,0 chrXIV 673093 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.11;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3030,330,0 chrXIV 673124 . A C 3370.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.80;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3370,378,0 chrXIV 673242 . C T 5021.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=11.3371;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.32;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5021,552,0 chrXIV 673326 . C T 4253.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=23.37;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4253,465,0 chrXIV 673486 . C T 4593.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.6265;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=22.51;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4593,498,0 chrXIV 673496 . C T 3952.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=20.91;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3952,438,0 chrXIV 673518 . G A 4101.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.25;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4101,453,0 chrXIV 673667 . G C 3697.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.11;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3697,420,0 chrXIV 673739 . G A 4127.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.32;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4127,450,0 chrXIV 673832 . A G 3200 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.22;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3233,378,0 chrXIV 673922 . T C 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=165;Dels=0.00;FS=7.237;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.112;QD=21.10;ReadPosRankSum=2.390;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3482,399,0 chrXIV 674108 . A G 4485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=196;Dels=0.00;FS=8.220;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.409;QD=22.88;ReadPosRankSum=2.424;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:4485,507,0 chrXIV 674132 . C T 4324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=193;Dels=0.00;FS=4.237;HaplotypeScore=8.7873;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-1.424;QD=22.40;ReadPosRankSum=1.605;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4324,477,0 chrXIV 674165 . T C 3446.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.143;QD=22.23;ReadPosRankSum=1.687;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:3446,387,0 chrXIV 674309 . T C 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=205;Dels=0.00;FS=10.454;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=0.759;QD=21.49;ReadPosRankSum=2.966;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:3,201:205:99:4405,510,0 chrXIV 674338 . G C 4309.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=15.1751;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=20.42;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,206:211:99:4309,504,0 chrXIV 674407 . T C 5287.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=233;Dels=0.00;FS=5.440;HaplotypeScore=15.4765;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.401;QD=22.69;ReadPosRankSum=2.970;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:3,230:233:99:5287,594,0 chrXIV 674483 . G A 5305.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.47;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5305,582,0 chrXIV 674552 . G C 4047.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.34;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4047,453,0 chrXIV 674553 . C T 4062.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.62;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4062,453,0 chrXIV 674892 . T C 6273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=12.1364;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=0.043;QD=24.03;ReadPosRankSum=2.355;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:2,257:261:99:6273,705,0 chrXIV 674949 . A G 4145.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=19.83;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4145,468,0 chrXIV 674958 . C T 3723.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.7700;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.90;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3723,408,0 chrXIV 675270 . A T 4068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=187;Dels=0.01;FS=2.862;HaplotypeScore=11.4233;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.613;QD=21.75;ReadPosRankSum=2.370;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:2,184:186:99:4068,441,0 chrXIV 675306 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.5309;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.87;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3142,345,0 chrXIV 675462 . G A 3568.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=20.9770;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.87;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3568,390,0 chrXIV 675522 . C T 4572.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4572,501,0 chrXIV 675567 . G A 3452.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.2026;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3452,375,0 chrXIV 675672 . A G 4088.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.3840;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.271;QD=21.40;ReadPosRankSum=1.695;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:1,187:191:99:4088,471,0 chrXIV 675859 . A G 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.778;DP=131;Dels=0.00;FS=4.916;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.135;QD=19.79;ReadPosRankSum=3.778;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:5,126:131:99:2625,294,0 chrXIV 675935 . T C 1968 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2001,228,0 chrXIV 676029 . T G 1335 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=17.80;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1368,153,0 chrXIV 676176 . A G 1367 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.17;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1400,168,0 chrXIV 676368 . A G 3363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=4.081;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.067;QD=22.27;ReadPosRankSum=1.663;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3363,375,0 chrXIV 676470 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.61;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3282,360,0 chrXIV 676834 . A G 4232.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.3530;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.38;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4232,477,0 chrXIV 676917 . A C 3856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.834;QD=23.80;ReadPosRankSum=1.711;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3856,429,0 chrXIV 677649 . C G 2476 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.72;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2509,279,0 chrXIV 677799 . A G 4051.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.5008;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4051,477,0 chrXIV 677841 . A G 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=175;Dels=0.00;FS=6.249;HaplotypeScore=13.7799;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.191;QD=22.42;ReadPosRankSum=2.393;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:3923,441,0 chrXIV 677931 . C T 3472.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3472,393,0 chrXIV 678759 . A G 2074 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2107,234,0 chrXIV 678819 . T C 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=2.884;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-0.461;QD=22.38;ReadPosRankSum=2.395;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3077,351,0 chrXIV 678849 . T C 3452.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.58;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3452,390,0 chrXIV 679026 . T C 2631 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.39;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,119:123:99:2664,300,0 chrXIV 679068 . A G 2623 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.74;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2656,297,0 chrXIV 679089 . G A 2708 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=19.34;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2741,300,0 chrXIV 679168 . G A 4161.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.61;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4161,465,0 chrXIV 679220 . C T 3591.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.73;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3591,393,0 chrXIV 679227 . A G 2961 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.1190;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.23;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:2994,351,0 chrXIV 679383 . G A 5471.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.71;SB=-3.043e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5471,624,0 chrXIV 679461 . T A 5550.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=13.1018;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.38;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:0,248:248:99:5550,615,0 chrXIV 679554 . T C 4115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.350;DP=194;Dels=0.00;FS=15.091;HaplotypeScore=13.4253;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.193;QD=21.21;ReadPosRankSum=3.350;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:4,187:194:99:4115,459,0 chrXIV 680022 . T C 3854.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-1.142;QD=20.95;ReadPosRankSum=1.713;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:3854,441,0 chrXIV 680044 . A G 3183 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=16.75;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3216,369,0 chrXIV 680049 . C T 3348.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=17.17;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3348,378,0 chrXIV 680095 . T C 2535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;MQRankSum=-1.732;QD=14.08;ReadPosRankSum=1.713;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:2568,297,0 chrXIV 680099 . G A 2490 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;QD=14.23;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2523,273,0 chrXIV 680127 . T C 2536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-1.085;QD=16.91;ReadPosRankSum=1.709;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2569,297,0 chrXIV 680172 . C T 2636 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=18.18;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2669,291,0 chrXIV 680328 . A G 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.239;DP=128;Dels=0.00;FS=8.367;HaplotypeScore=6.0945;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=-0.185;QD=21.47;ReadPosRankSum=3.307;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:4,124:128:99:2781,318,0 chrXIV 680383 . G A 2457 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.54;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2490,267,0 chrXIV 680403 . C T 2325 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.76;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2358,261,0 chrXIV 680406 . T C 2205 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.23;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2238,261,0 chrXIV 680467 . T C 1876 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.32;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1909,213,0 chrXIV 680684 . C T 2567 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.68;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2600,285,0 chrXIV 681117 . G A 5471.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=19.8058;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.24;SB=-2.916e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:5471,594,0 chrXIV 681312 . C T 4093.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.24;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,180:184:99:4093,462,0 chrXIV 682434 . A G 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0885;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.684;QD=21.94;ReadPosRankSum=1.684;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3171,357,0 chrXIV 682580 . A T 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.00;FS=7.142;HaplotypeScore=13.0376;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.449;QD=23.38;ReadPosRankSum=2.314;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3413,366,0 chrXIV 682695 . A G 3625.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.66;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3625,423,0 chrXIV 682893 . C T 2702 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.50;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2735,297,0 chrXIV 683057 . A G 2599 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.5956;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.30;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2632,294,0 chrXIV 683189 . G A 2264 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.96;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2297,252,0 chrXIV 683193 . G A 2193 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.94;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2226,249,0 chrXIV 683256 . A C 2603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.356;QD=18.86;ReadPosRankSum=1.707;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2636,306,0 chrXIV 683297 . A G 3072 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.42;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3105,351,0 chrXIV 683478 . C T 2416 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.38;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2449,279,0 chrXIV 683709 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.5509;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.16;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2974,333,0 chrXIV 684087 . A G 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=110;Dels=0.00;FS=3.707;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.091;QD=20.95;ReadPosRankSum=1.604;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2338,264,0 chrXIV 684212 . T C 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.689;QD=21.88;ReadPosRankSum=1.689;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3522,393,0 chrXIV 684656 . A G 4021.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.85;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4021,444,0 chrXIV 684669 . A G 3959.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=19.99;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:3959,465,0 chrXIV 684891 . C T 5367.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=15.7244;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.21;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5367,615,0 chrXIV 684966 . A G 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.136;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.3585;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.085;QD=20.56;ReadPosRankSum=2.409;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:3742,423,0 chrXIV 685065 . A T 3051 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.34;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3084,342,0 chrXIV 685071 . A C 2755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.337;QD=17.33;ReadPosRankSum=1.710;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,153:159:99:2788,312,0 chrXIV 685773 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.4470;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.86;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3267,366,0 chrXIV 686126 . T C 5124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=18.5370;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.378;QD=22.57;ReadPosRankSum=1.670;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:1,224:227:99:5124,573,0 chrXIV 686348 . A C 4620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=16.4670;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-2.099;QD=20.63;ReadPosRankSum=0.597;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:2,222:224:99:4620,513,0 chrXIV 686681 . T C 4541.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=202;Dels=0.00;FS=10.325;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.149;QD=22.48;ReadPosRankSum=2.935;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:3,199:202:99:4541,528,0 chrXIV 686786 . T C 3323.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.03;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3323,390,0 chrXIV 686798 . T C 3508.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.65;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3508,399,0 chrXIV 687249 . G A 2341 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=19.19;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2374,258,0 chrXIV 687374 . A G 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=114;Dels=0.00;FS=5.963;HaplotypeScore=15.3088;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.527;QD=21.71;ReadPosRankSum=2.884;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:3,110:114:99:2508,285,0 chrXIV 687406 . G C 2646 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.51;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2679,303,0 chrXIV 687661 . G A 5929.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=18.9606;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.63;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,258:262:99:5929,648,0 chrXIV 687788 . G A 6533.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=16.1190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-3.578e+03 GT:AD:DP:GQ:PL 1/1:0,282:284:99:6533,700,0 chrXIV 687853 . C T 6356.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=17.3172;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.99;SB=-3.007e+03 GT:AD:DP:GQ:PL 1/1:0,288:289:99:6356,705,0 chrXIV 688148 . G T 4174.01 SnpCluster AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=2.5488;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=20.07;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4174,453,0 chrXIV 688149 . A T 4232.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=210;Dels=0.00;FS=5.963;HaplotypeScore=2.5488;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=-1.440;QD=20.15;ReadPosRankSum=2.937;SB=-2.596e+03 GT:AD:DP:GQ:PL 1/1:3,206:210:99:4232,453,0 chrXIV 688150 . A C 3934.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.735;QD=18.91;ReadPosRankSum=1.681;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:3934,450,0 chrXIV 688300 . C T 4044.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.63;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4044,438,0 chrXIV 688306 . C T 3686.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=20.48;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3686,420,0 chrXIV 688466 . G C 3996.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.37;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3996,447,0 chrXIV 688572 . C G 3749.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.4487;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.18;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3749,414,0 chrXIV 688807 . C T 3523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.322;QD=23.18;ReadPosRankSum=-0.524;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3523,366,0 chrXIV 688900 . T C 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.5653;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.195;QD=22.34;ReadPosRankSum=1.689;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3575,411,0 chrXIV 689582 . C G 5637.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=11.8547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.82;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,243:247:99:5637,627,0 chrXIV 689944 . C G 3622.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.12;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3622,408,0 chrXIV 689964 . A C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.02;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3268,369,0 chrXIV 689969 . T C 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=174;Dels=0.00;FS=17.840;HaplotypeScore=5.7251;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-0.936;QD=19.40;ReadPosRankSum=2.925;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3376,375,0 chrXIV 690162 . T G 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.135;DP=86;Dels=0.00;FS=3.040;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.817;QD=21.56;ReadPosRankSum=2.335;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1887,216,0 chrXIV 690208 . T A 2772 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=24.75;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2805,300,0 chrXIV 690239 . A G 2510 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.61;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2543,300,0 chrXIV 690300 . A C 2334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=126;Dels=0.00;FS=12.262;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.407;QD=18.52;ReadPosRankSum=2.895;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:3,121:126:99:2367,267,0 chrXIV 690310 . T C 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.2285;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.190;QD=18.77;ReadPosRankSum=2.413;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2586,294,0 chrXIV 690677 . A G 3896.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=12.9767;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.644;QD=19.78;ReadPosRankSum=1.679;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3896,441,0 chrXIV 691294 . A G 113.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.417;DP=128;Dels=0.00;FS=1.491;HaplotypeScore=114.8490;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-0.192;QD=0.88;ReadPosRankSum=-4.129;SB=-8.013e+01 GT:AD:DP:GQ:PL 1/1:120,8:128:18:146,18,0 chrXIV 691593 . G A 3209 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.0281;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.77;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3242,354,0 chrXIV 691738 . T C 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=157;Dels=0.00;FS=5.231;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.168;QD=19.43;ReadPosRankSum=2.942;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:3083,339,0 chrXIV 691739 . T C 3134 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.96;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3167,348,0 chrXIV 691787 . G A 3952.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=19.86;SB=-2.350e+03 GT:AD:DP:GQ:PL 1/1:0,195:199:99:3952,420,0 chrXIV 691804 . A C 3805.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.79;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3805,417,0 chrXIV 692150 . C T 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=184;Dels=0.00;FS=3.850;HaplotypeScore=9.4518;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.580;QD=23.05;ReadPosRankSum=0.780;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4241,447,0 chrXIV 692612 . C T 5039.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.07;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5039,546,0 chrXIV 692704 . A G 5032.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.74;SB=-2.372e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5032,582,0 chrXIV 692743 . A G 4352.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.20;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4352,486,0 chrXIV 692864 . A G 4157.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4157,468,0 chrXIV 693379 . G T 3018 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.2224;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3051,339,0 chrXIV 693964 . C T 5057.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=7.1480;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.64;SB=-2.936e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5057,579,0 chrXIV 694158 . T A 2757 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.73;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2790,306,0 chrXIV 694273 . T C 704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.893;QD=16.76;ReadPosRankSum=3.573;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:5,37:42:84:737,84,0 chrXIV 694332 . G C 2515 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=19.65;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2548,282,0 chrXIV 694337 . A G 2587 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=18.09;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2620,288,0 chrXIV 694347 . G C 2744 filter AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.4743;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=16.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:2777,312,0 chrXIV 694765 . A G 3170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.7837;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.032;QD=19.69;ReadPosRankSum=1.646;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3203,369,0 chrXIV 694868 . C T 2415 filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2448,270,0 chrXIV 694937 . T C 1276 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1309,144,0 chrXIV 695505 . T A 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.8671;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;MQRankSum=0.391;QD=14.75;ReadPosRankSum=2.308;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:3,167:170:99:2540,288,0 chrXIV 695519 . A T 2255 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;QD=13.83;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2288,252,0 chrXIV 695526 . A G 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=4.311;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;MQRankSum=-0.448;QD=13.72;ReadPosRankSum=1.671;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:2365,270,0 chrXIV 695563 . G A 2534 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=13.92;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:2567,282,0 chrXIV 695572 . A G 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=190;Dels=0.00;FS=4.888;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;MQRankSum=-0.553;QD=12.60;ReadPosRankSum=1.714;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:2427,273,0 chrXIV 695585 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=14.87;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:2873,318,0 chrXIV 695628 . A C 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=191;Dels=0.00;FS=4.014;HaplotypeScore=14.8319;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=-1.127;QD=17.95;ReadPosRankSum=1.640;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:3429,384,0 chrXIV 695662 . T C 3946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=174;Dels=0.00;FS=2.930;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=1.754;QD=22.68;ReadPosRankSum=2.308;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3946,441,0 chrXIV 695861 . T C 3814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=0.774;QD=20.18;ReadPosRankSum=1.658;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3814,423,0 chrXIV 695864 . C T 3684.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.70;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3684,411,0 chrXIV 695927 . T C 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=4.337;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=0.390;QD=17.96;ReadPosRankSum=1.715;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:3753,429,0 chrXIV 695952 . G A 4287.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.03;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4287,474,0 chrXIV 695956 . T C 4239.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=19.81;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4239,477,0 chrXIV 696037 . C G 3507.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.8793;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.63;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,166:170:99:3507,387,0 chrXIV 696194 . C T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.04;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3295,360,0 chrXIV 696302 . C T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3598,399,0 chrXIV 696443 . T A 3731.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4186;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3731,411,0 chrXIV 696683 . A G 3286.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.62;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3286,366,0 chrXIV 696876 . G A 3309.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.70;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3309,381,0 chrXIV 697118 . G A 3102 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.41;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3135,345,0 chrXIV 697132 . A C 3559.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.3252;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=19.66;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3559,393,0 chrXIV 697337 . C T 3782.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.1655;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.49;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3782,420,0 chrXIV 697709 . C T 3846.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.62;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3846,429,0 chrXIV 697791 . T A 4984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=218;Dels=0.00;FS=3.279;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.136;QD=22.86;ReadPosRankSum=1.700;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:4984,558,0 chrXIV 697917 . C T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.57;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3796,414,0 chrXIV 698351 . G A 4118.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.67;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4118,459,0 chrXIV 698660 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.51;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3331,360,0 chrXIV 698753 . A G 2737 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=15.1888;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.72;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2770,312,0 chrXIV 698784 . A G 2751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.996;QD=21.66;ReadPosRankSum=1.705;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2784,315,0 chrXIV 699152 . C T 4116.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.66;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4116,459,0 chrXIV 699673 . C G 6165.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.71;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,257:260:99:6165,702,0 chrXIV 700166 . C T 3474.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=21.8200;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=1.435;QD=20.80;ReadPosRankSum=-0.606;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3474,393,0 chrXIV 700262 . A G 4703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.175;DP=210;Dels=0.00;FS=13.398;HaplotypeScore=18.2064;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.598;QD=22.40;ReadPosRankSum=3.326;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:4,204:210:99:4703,522,0 chrXIV 700319 . C G 4027.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.7775;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.55;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:4027,450,0 chrXIV 700395 . G A 3817.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.6584;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.21;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3817,432,0 chrXIV 700405 . T A 3827.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.53;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3827,420,0 chrXIV 700427 . A G 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=203;Dels=0.00;FS=6.074;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=1.522;QD=18.72;ReadPosRankSum=2.876;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:3,200:203:99:3800,429,0 chrXIV 700775 . C T 5914.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=12.1237;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.97;SB=-2.537e+03 GT:AD:DP:GQ:PL 1/1:0,280:282:99:5914,637,0 chrXIV 700796 . A G 5843.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=13.7158;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.61;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,295:298:99:5843,660,0 chrXIV 701168 . A G 4632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.792;DP=213;Dels=0.00;FS=7.985;HaplotypeScore=8.5924;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.553;QD=21.75;ReadPosRankSum=3.733;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:5,207:213:99:4632,528,0 chrXIV 701450 . T C 3943.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.50;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:3943,447,0 chrXIV 701567 . T A 3969.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.245;DP=212;Dels=0.00;FS=4.871;HaplotypeScore=12.7750;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.096;QD=18.72;ReadPosRankSum=2.509;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:4,207:212:99:3969,453,0 chrXIV 701618 . G T 3523.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.0763;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.15;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:3523,390,0 chrXIV 701689 . T C 3854.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.15;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3854,441,0 chrXIV 702035 . G A 8305.01 filter AC=2;AF=1.00;AN=2;DP=383;Dels=0.00;FS=0.000;HaplotypeScore=19.1293;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.68;SB=-4.254e+03 GT:AD:DP:GQ:PL 1/1:0,381:383:99:8305,965,0 chrXIV 702206 . C T 6276.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=25.3039;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.57;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,289:291:99:6276,679,0 chrXIV 702383 . A G 4394.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=206;Dels=0.00;FS=6.571;HaplotypeScore=12.4318;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-2.293;QD=21.33;ReadPosRankSum=2.401;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4394,492,0 chrXIV 702483 . C T 4929.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.03;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4929,543,0 chrXIV 702719 . T C 4716.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.9344;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.15;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4716,549,0 chrXIV 702818 . G A 5360.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=20.2572;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.62;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5360,603,0 chrXIV 702909 . A G 4496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.394;QD=21.93;ReadPosRankSum=1.698;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:1,201:205:99:4496,504,0 chrXIV 702947 . A T 4315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.240;QD=22.59;ReadPosRankSum=1.714;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4315,471,0 chrXIV 702991 . A G 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.4576;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.645;QD=23.93;ReadPosRankSum=1.687;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3685,408,0 chrXIV 703043 . C T 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.227;DP=152;Dels=0.00;FS=4.714;HaplotypeScore=10.2894;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=1.227;QD=22.61;ReadPosRankSum=0.241;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3437,356,0 chrXIV 703080 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=22.69;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3404,366,0 chrXIV 703250 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.678;DP=139;Dels=0.00;FS=4.156;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-1.305;QD=23.24;ReadPosRankSum=-1.431;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3264,333,0 chrXIV 703315 . A G 2152 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=3.691;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;MQRankSum=-0.559;QD=17.35;ReadPosRankSum=1.620;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2185,249,0 chrXIV 703322 . C T 2015 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.91;MQ0=0;QD=17.37;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2048,225,0 chrXIV 703323 . C A 1977 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;QD=16.61;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2010,228,0 chrXIV 703330 . C T 1848 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;QD=16.07;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1881,213,0 chrXIV 703355 . C G 1757 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=40.99;MQ0=0;QD=14.52;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:1790,201,0 chrXIV 703361 . G A 1740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;MQRankSum=-0.231;QD=14.50;ReadPosRankSum=-0.606;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1773,195,0 chrXIV 703536 . G A 3086 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=23.56;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3119,345,0 chrXIV 703585 . C T 2856 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=22.67;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2889,321,0 chrXIV 703603 . C T 2464 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=21.06;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2497,282,0 chrXIV 703642 . A G 2883 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.51;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2916,342,0 chrXIV 703674 . A G 3300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=138;Dels=0.00;FS=10.882;HaplotypeScore=9.0934;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=0.022;QD=23.91;ReadPosRankSum=2.949;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:3,134:138:99:3300,375,0 chrXIV 703883 . G A 8779.01 PASS AC=2;AF=1.00;AN=2;DP=359;Dels=0.00;FS=0.000;HaplotypeScore=16.7540;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=24.45;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,358:359:99:8779,943,0 chrXIV 703938 . T C 7380.01 PASS AC=2;AF=1.00;AN=2;DP=360;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.50;SB=-4.525e+03 GT:AD:DP:GQ:PL 1/1:0,360:360:99:7380,843,0 chrXIV 703949 . G C 7437.01 filter AC=2;AF=1.00;AN=2;DP=385;Dels=0.00;FS=0.000;HaplotypeScore=21.1882;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=19.32;SB=-4.766e+03 GT:AD:DP:GQ:PL 1/1:0,380:385:99:7437,837,0 chrXIV 704094 . T C 9545.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=443;Dels=0.00;FS=6.924;HaplotypeScore=18.1172;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;MQRankSum=0.804;QD=21.55;ReadPosRankSum=2.411;SB=-5.011e+03 GT:AD:DP:GQ:PL 1/1:2,439:443:99:9545,1065,0 chrXIV 704114 . C G 8754.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=406;Dels=0.00;FS=3.409;HaplotypeScore=11.7663;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;MQRankSum=1.229;QD=21.56;ReadPosRankSum=1.706;SB=-4.729e+03 GT:AD:DP:GQ:PL 1/1:1,398:406:99:8754,981,0 chrXIV 704292 . A C 2095.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.292;DP=214;Dels=0.00;FS=28.196;HaplotypeScore=15.8193;MLEAC=1;MLEAF=0.500;MQ=29.66;MQ0=0;MQRankSum=-0.962;QD=9.79;ReadPosRankSum=5.097;SB=-9.350e+02 GT:AD:DP:GQ:PL 0/1:53,161:214:99:2125,0,212 chrXIV 704295 . T A 1892.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;DP=196;Dels=0.00;FS=24.611;HaplotypeScore=7.7430;MLEAC=1;MLEAF=0.500;MQ=28.51;MQ0=0;MQRankSum=0.510;QD=9.65;ReadPosRankSum=3.643;SB=-7.750e+02 GT:AD:DP:GQ:PL 0/1:55,141:196:99:1922,0,282 chrXIV 704296 . C T 1916.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;DP=199;Dels=0.00;FS=26.997;HaplotypeScore=14.6863;MLEAC=1;MLEAF=0.500;MQ=28.52;MQ0=0;MQRankSum=1.694;QD=9.63;ReadPosRankSum=3.574;SB=-7.340e+02 GT:AD:DP:GQ:PL 0/1:60,139:199:99:1946,0,284 chrXIV 704301 . C T 1639.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.082;DP=186;Dels=0.00;FS=16.574;HaplotypeScore=14.6863;MLEAC=1;MLEAF=0.500;MQ=28.48;MQ0=0;MQRankSum=-0.969;QD=8.81;ReadPosRankSum=-0.249;SB=-4.640e+02 GT:AD:DP:GQ:PL 0/1:59,127:186:99:1669,0,250 chrXIV 704304 . T A 1385.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.953;DP=175;Dels=0.00;FS=13.519;HaplotypeScore=13.8976;MLEAC=1;MLEAF=0.500;MQ=28.67;MQ0=0;MQRankSum=-1.636;QD=7.91;ReadPosRankSum=-2.169;SB=-3.270e+02 GT:AD:DP:GQ:PL 0/1:68,107:175:99:1415,0,411 chrXIV 704313 . C A 619.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;DP=173;Dels=0.00;FS=5.526;HaplotypeScore=16.8161;MLEAC=1;MLEAF=0.500;MQ=28.89;MQ0=0;MQRankSum=0.785;QD=3.58;ReadPosRankSum=-2.497;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,68:173:99:649,0,879 chrXIV 704316 . A T 454.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;DP=169;Dels=0.00;FS=2.526;HaplotypeScore=22.2216;MLEAC=1;MLEAF=0.500;MQ=28.83;MQ0=0;MQRankSum=2.425;QD=2.69;ReadPosRankSum=-1.128;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,48:169:99:484,0,1055 chrXIV 704317 . T C 441.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.886;DP=168;Dels=0.00;FS=2.530;HaplotypeScore=11.5537;MLEAC=1;MLEAF=0.500;MQ=28.83;MQ0=0;MQRankSum=0.655;QD=2.63;ReadPosRankSum=-2.245;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,48:168:99:471,0,1086 chrXIV 704325 . G A,T 1439.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.372;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.83;MQ0=0;MQRankSum=0.101;QD=8.77;ReadPosRankSum=-1.572;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/2:6,135,23:164:86:1499,160,86,1257,0,1318 chrXIV 704327 . C A 50.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.931;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.9105;MLEAC=1;MLEAF=0.500;MQ=28.77;MQ0=0;MQRankSum=-0.772;QD=0.30;ReadPosRankSum=-5.441;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,23:164:80:80,0,1360 chrXIV 704334 . C A 1533 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.790;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.9105;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;MQRankSum=-0.351;QD=9.76;ReadPosRankSum=6.519;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:16,141:157:99:1566,135,0 chrXIV 704337 . A T 1374 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.851;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=34.9669;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;MQRankSum=-0.207;QD=9.10;ReadPosRankSum=5.263;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:10,135:151:99:1407,112,0 chrXIV 704338 . T C 1482 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.011;DP=149;Dels=0.00;FS=7.499;HaplotypeScore=21.0031;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;MQRankSum=-0.406;QD=9.95;ReadPosRankSum=4.453;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:8,141:149:99:1515,131,0 chrXIV 704346 . G T 1640 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.722;DP=209;Dels=0.00;FS=2.267;HaplotypeScore=22.3021;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;MQRankSum=0.960;QD=7.85;ReadPosRankSum=-0.933;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:6,202:209:99:1673,110,0 chrXIV 704348 . C A 1742 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=8.062;DP=217;Dels=0.00;FS=267.012;HaplotypeScore=30.2342;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;MQRankSum=0.093;QD=8.03;ReadPosRankSum=7.675;SB=-4.101e+01 GT:AD:DP:GQ:PL 1/1:40,177:217:76:1775,76,0 chrXIV 704367 . G A 321.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.216;DP=224;Dels=0.00;FS=189.801;HaplotypeScore=25.3003;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.360;QD=1.43;ReadPosRankSum=1.592;SB=-3.470e+02 GT:AD:DP:GQ:PL 0/1:144,73:224:99:351,0,1104 chrXIV 704379 . T C 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.898;DP=192;Dels=0.00;FS=6.384;HaplotypeScore=9.4912;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.565;QD=8.19;ReadPosRankSum=-0.750;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,186:192:99:1606,180,0 chrXIV 704394 . C T 271.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.055;DP=241;Dels=0.00;FS=50.535;HaplotypeScore=34.9476;MLEAC=1;MLEAF=0.500;MQ=28.96;MQ0=0;MQRankSum=0.119;QD=1.12;ReadPosRankSum=-6.511;SB=-3.970e+02 GT:AD:DP:GQ:PL 0/1:166,75:241:99:301,0,1136 chrXIV 704400 . T C 406.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.785;DP=239;Dels=0.00;FS=41.092;HaplotypeScore=8.9243;MLEAC=1;MLEAF=0.500;MQ=28.72;MQ0=0;MQRankSum=1.417;QD=1.70;ReadPosRankSum=-2.607;SB=-7.430e+02 GT:AD:DP:GQ:PL 0/1:154,85:239:99:436,0,889 chrXIV 704401 . T C 407.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;DP=242;Dels=0.00;FS=35.190;HaplotypeScore=12.8677;MLEAC=1;MLEAF=0.500;MQ=28.72;MQ0=0;MQRankSum=-2.551;QD=1.68;ReadPosRankSum=-0.311;SB=-7.310e+02 GT:AD:DP:GQ:PL 0/1:156,86:242:99:437,0,882 chrXIV 704402 . C T 795.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;DP=254;Dels=0.00;FS=32.956;HaplotypeScore=13.8660;MLEAC=1;MLEAF=0.500;MQ=28.74;MQ0=0;MQRankSum=-0.881;QD=3.13;ReadPosRankSum=4.513;SB=-8.430e+02 GT:AD:DP:GQ:PL 0/1:118,135:254:99:825,0,416 chrXIV 704408 . T C 1403 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.143;DP=225;Dels=0.00;FS=12.237;HaplotypeScore=26.1350;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;MQRankSum=0.143;QD=6.24;ReadPosRankSum=1.228;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:4,221:225:99:1436,165,0 chrXIV 704409 . G T 388.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.142;DP=232;Dels=0.00;FS=8.434;HaplotypeScore=26.1350;MLEAC=1;MLEAF=0.500;MQ=28.79;MQ0=0;MQRankSum=-0.262;QD=1.67;ReadPosRankSum=2.089;SB=-8.190e+02 GT:AD:DP:GQ:PL 0/1:138,94:232:99:418,0,620 chrXIV 704415 . C T 182.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692;DP=248;Dels=0.00;FS=4.540;HaplotypeScore=25.0031;MLEAC=1;MLEAF=0.500;MQ=28.73;MQ0=0;MQRankSum=-0.447;QD=0.73;ReadPosRankSum=-3.276;SB=-3.400e+02 GT:AD:DP:GQ:PL 0/1:161,87:248:99:212,0,923 chrXIV 704418 . A C 143.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;DP=259;Dels=0.00;FS=1.057;HaplotypeScore=24.0137;MLEAC=1;MLEAF=0.500;MQ=28.74;MQ0=0;MQRankSum=1.545;QD=0.55;ReadPosRankSum=-5.447;SB=-5.940e+02 GT:AD:DP:GQ:PL 0/1:183,75:259:99:173,0,1182 chrXIV 704421 . T C 193.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;DP=245;Dels=0.00;FS=8.918;HaplotypeScore=23.0111;MLEAC=1;MLEAF=0.500;MQ=28.73;MQ0=0;MQRankSum=0.156;QD=0.79;ReadPosRankSum=-4.411;SB=-3.750e+02 GT:AD:DP:GQ:PL 0/1:189,56:245:99:223,0,1107 chrXIV 704422 . T C 201.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;DP=245;Dels=0.00;FS=6.421;HaplotypeScore=23.7998;MLEAC=1;MLEAF=0.500;MQ=28.73;MQ0=0;MQRankSum=1.235;QD=0.82;ReadPosRankSum=-5.390;SB=-4.330e+02 GT:AD:DP:GQ:PL 0/1:187,58:245:99:231,0,1104 chrXIV 704423 . C T 1633 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.941;DP=245;Dels=0.00;FS=11.705;HaplotypeScore=21.8098;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;MQRankSum=-0.061;QD=6.67;ReadPosRankSum=3.134;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:5,240:245:99:1666,192,0 chrXIV 704439 . A C 1287.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828;DP=256;Dels=0.00;FS=108.482;HaplotypeScore=10.5363;MLEAC=1;MLEAF=0.500;MQ=28.63;MQ0=0;MQRankSum=0.265;QD=5.03;ReadPosRankSum=2.902;SB=-1.877e+03 GT:AD:DP:GQ:PL 0/1:68,188:256:99:1317,0,329 chrXIV 704444 . A T 2173 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=10.5526;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=7.73;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:0,278:281:99:2206,255,0 chrXIV 704459 . C T 1811.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.636;DP=316;Dels=0.00;FS=108.226;HaplotypeScore=2.9827;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=0;MQRankSum=2.269;QD=5.73;ReadPosRankSum=-4.373;SB=-2.939e+03 GT:AD:DP:GQ:PL 0/1:67,249:316:99:1841,0,294 chrXIV 704472 . G A 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.124;DP=302;Dels=0.00;FS=12.985;HaplotypeScore=5.9341;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;MQRankSum=-1.574;QD=9.08;ReadPosRankSum=2.735;SB=-2.723e+03 GT:AD:DP:GQ:PL 1/1:3,296:302:99:2774,312,0 chrXIV 704484 . T C 220.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600;DP=255;Dels=0.00;FS=77.365;HaplotypeScore=8.6587;MLEAC=1;MLEAF=0.500;MQ=28.66;MQ0=0;MQRankSum=0.249;QD=0.86;ReadPosRankSum=-0.939;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:203,52:255:99:250,0,1656 chrXIV 704490 . C T 2336 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.618;DP=234;Dels=0.00;FS=14.258;HaplotypeScore=11.6380;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;MQRankSum=-2.318;QD=9.98;ReadPosRankSum=0.798;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:3,231:234:99:2369,264,0 chrXIV 704493 . T G 227.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.765;DP=227;Dels=0.00;FS=84.195;HaplotypeScore=10.6486;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=0;MQRankSum=0.307;QD=1.00;ReadPosRankSum=-3.334;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:179,48:227:99:257,0,1450 chrXIV 704495 . C A 1402.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.150;DP=215;Dels=0.00;FS=55.115;HaplotypeScore=11.3097;MLEAC=1;MLEAF=0.500;MQ=28.68;MQ0=0;MQRankSum=-0.070;QD=6.52;ReadPosRankSum=4.768;SB=-1.603e+03 GT:AD:DP:GQ:PL 0/1:52,163:215:99:1432,0,285 chrXIV 704499 . T C 267.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.145;DP=207;Dels=0.00;FS=69.348;HaplotypeScore=15.5216;MLEAC=1;MLEAF=0.500;MQ=28.67;MQ0=0;MQRankSum=-1.370;QD=1.29;ReadPosRankSum=-4.490;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:163,44:207:99:297,0,1077 chrXIV 704502 . C A 244.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.385;DP=198;Dels=0.00;FS=64.028;HaplotypeScore=12.5449;MLEAC=1;MLEAF=0.500;MQ=28.65;MQ0=0;MQRankSum=-0.918;QD=1.23;ReadPosRankSum=-4.466;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:157,41:198:99:274,0,1249 chrXIV 704505 . A T 129.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.653;DP=180;Dels=0.00;FS=59.136;HaplotypeScore=172.1279;MLEAC=1;MLEAF=0.500;MQ=28.72;MQ0=0;MQRankSum=-0.133;QD=0.72;ReadPosRankSum=-4.070;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:146,31:180:99:159,0,1190 chrXIV 704507 . C T 110.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;DP=176;Dels=0.00;FS=55.577;HaplotypeScore=135.6582;MLEAC=1;MLEAF=0.500;MQ=28.72;MQ0=0;MQRankSum=0.804;QD=0.63;ReadPosRankSum=-4.163;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:145,31:176:99:140,0,1183 chrXIV 704514 . A T 703.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;DP=151;Dels=0.00;FS=343.601;HaplotypeScore=55.2731;MLEAC=1;MLEAF=0.500;MQ=28.73;MQ0=0;MQRankSum=-0.212;QD=4.66;ReadPosRankSum=2.230;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:55,96:151:99:733,0,384 chrXIV 704526 . T C 137.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=111;Dels=0.01;FS=200.496;HaplotypeScore=29.5658;MLEAC=1;MLEAF=0.500;MQ=28.98;MQ0=0;MQRankSum=-0.316;QD=1.23;ReadPosRankSum=0.007;SB=0.062 GT:AD:DP:GQ:PL 0/1:87,23:110:99:167,0,510 chrXIV 704535 . T G 319.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;DP=78;Dels=0.00;FS=18.527;HaplotypeScore=10.5470;MLEAC=1;MLEAF=0.500;MQ=29.11;MQ0=0;MQRankSum=0.520;QD=4.09;ReadPosRankSum=-0.390;SB=-2.090e+02 GT:AD:DP:GQ:PL 0/1:39,39:78:99:349,0,257 chrXIV 704537 . A C 341.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969;DP=80;Dels=0.00;FS=18.527;HaplotypeScore=3.1507;MLEAC=1;MLEAF=0.500;MQ=29.11;MQ0=0;MQRankSum=0.859;QD=4.26;ReadPosRankSum=-2.768;SB=-2.010e+02 GT:AD:DP:GQ:PL 0/1:41,39:80:99:371,0,303 chrXIV 704541 . T C 205.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;DP=75;Dels=0.00;FS=15.304;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=28.99;MQ0=0;MQRankSum=-0.582;QD=2.73;ReadPosRankSum=-4.629;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:46,29:75:99:235,0,319 chrXIV 704544 . T A,C 596.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.99;MQ0=0;QD=9.03;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/2:0,20,46:66:99:656,407,377,249,0,198 chrXIV 704547 . T A,C 449.02 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=10.414;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=29.00;MQ0=0;MQRankSum=-1.485;QD=8.02;ReadPosRankSum=1.670;SB=-2.020e-02 GT:AD:DP:GQ:PL 1/2:1,45,10:56:52:509,103,52,405,0,393 chrXIV 704548 . G C,T 460.09 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=29.00;MQ0=0;QD=8.37;SB=-9.212e-02 GT:AD:DP:GQ:PL 1/2:0,10,45:55:44:520,425,413,95,0,44 chrXIV 704553 . C T 403 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.61;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:48:436,48,0 chrXIV 704556 . C T 439 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.46;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:51:472,51,0 chrXIV 704559 . T A 489 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.346;QD=6.99;ReadPosRankSum=1.683;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:1,69:70:60:522,60,0 chrXIV 704562 . C T 508 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.51;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:60:541,60,0 chrXIV 704565 . T A 598 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.47;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:72:631,72,0 chrXIV 704569 . T C 628 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=7.66;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,82:82:72:661,72,0 chrXIV 704572 . T A 655 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=9.176;HaplotypeScore=1.9841;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;MQRankSum=0.666;QD=7.20;ReadPosRankSum=1.390;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:75:688,75,0 chrXIV 704573 . A G 676 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.506;DP=92;Dels=0.00;FS=8.846;HaplotypeScore=1.9841;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;MQRankSum=0.565;QD=7.35;ReadPosRankSum=1.393;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:78:709,78,0 chrXIV 704577 . A G 861 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=29.31;MQ0=0;QD=7.12;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:894,108,0 chrXIV 704583 . T C 1421 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.7815;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=0;QD=9.73;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1454,168,0 chrXIV 704786 . T C 5726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.348;DP=310;Dels=0.00;FS=12.241;HaplotypeScore=21.9530;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;MQRankSum=-0.319;QD=18.47;ReadPosRankSum=3.382;SB=-3.746e+03 GT:AD:DP:GQ:PL 1/1:4,304:310:99:5726,660,0 chrXIV 704844 . C T 5946.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=20.1763;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.01;SB=-3.138e+03 GT:AD:DP:GQ:PL 1/1:0,280:283:99:5946,672,0 chrXIV 705005 . C A 6571.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=23.1620;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=22.82;SB=-3.472e+03 GT:AD:DP:GQ:PL 1/1:0,288:288:99:6571,718,0 chrXIV 705188 . G A 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.852;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=6.1241;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=0;MQRankSum=-0.275;QD=16.67;ReadPosRankSum=1.650;SB=-3.328e+03 GT:AD:DP:GQ:PL 1/1:1,251:252:99:4202,456,0 chrXIV 705191 . C T 4026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.239;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=3.7581;MLEAC=2;MLEAF=1.00;MQ=38.50;MQ0=0;MQRankSum=0.620;QD=16.17;ReadPosRankSum=1.366;SB=-3.231e+03 GT:AD:DP:GQ:PL 1/1:1,245:249:99:4026,441,0 chrXIV 705204 . G A 3436.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.95;MQ0=0;QD=14.44;SB=-3.034e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:3436,387,0 chrXIV 705208 . A T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.85;MQ0=0;QD=14.96;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:3530,384,0 chrXIV 705221 . G A 2957 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.05;MQ0=0;QD=12.80;SB=-2.834e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:2990,318,0 chrXIV 705227 . T A 2818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.718;DP=231;Dels=0.00;FS=17.142;HaplotypeScore=4.3343;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=0;MQRankSum=-2.730;QD=12.20;ReadPosRankSum=3.785;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:5,226:231:99:2851,312,0 chrXIV 705401 . T C 4591.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=16.2284;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;MQRankSum=-1.082;QD=19.87;ReadPosRankSum=1.717;SB=-2.868e+03 GT:AD:DP:GQ:PL 1/1:1,228:231:99:4591,510,0 chrXIV 705451 . C T 3905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=6.2755;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;MQRankSum=-0.941;QD=17.75;ReadPosRankSum=1.337;SB=-2.864e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:3905,426,0 chrXIV 705452 . T C 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=224;Dels=0.00;FS=6.048;HaplotypeScore=3.7796;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;MQRankSum=-1.329;QD=17.04;ReadPosRankSum=2.860;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:3,220:223:99:3816,435,0 chrXIV 705531 . A G 4832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=250;Dels=0.00;FS=5.825;HaplotypeScore=10.5492;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;MQRankSum=0.280;QD=19.33;ReadPosRankSum=2.971;SB=-2.714e+03 GT:AD:DP:GQ:PL 1/1:3,241:250:99:4832,546,0 chrXIV 705551 . C T 4918.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=19.29;SB=-3.104e+03 GT:AD:DP:GQ:PL 1/1:0,254:255:99:4918,537,0 chrXIV 705568 . G A 3908.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;QD=16.22;SB=-2.937e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:3908,438,0 chrXIV 705570 . C A 4006.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=16.90;SB=-2.989e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4006,441,0 chrXIV 705599 . T C 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=285;Dels=0.00;FS=5.826;HaplotypeScore=7.5057;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=-1.419;QD=14.61;ReadPosRankSum=2.961;SB=-3.244e+03 GT:AD:DP:GQ:PL 1/1:3,282:285:99:4163,471,0 chrXIV 705627 . G A 3636.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=4.4434;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=13.37;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:3636,399,0 chrXIV 705631 . A G 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=268;Dels=0.00;FS=7.853;HaplotypeScore=6.7098;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;MQRankSum=-0.337;QD=13.96;ReadPosRankSum=2.431;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:2,264:268:99:3742,426,0 chrXIV 705671 . T C 3710.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=15.92;SB=-2.795e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:3710,417,0 chrXIV 705870 . C T 3173 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.47;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3206,360,0 chrXIV 706575 . A T 5484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=245;Dels=0.00;FS=2.596;HaplotypeScore=19.1693;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.583;QD=22.38;ReadPosRankSum=2.419;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:2,243:245:99:5484,597,0 chrXIV 706720 . T C 4071.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.382;QD=21.65;ReadPosRankSum=1.714;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4071,459,0 chrXIV 706775 . A G 4320.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.8528;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=23.10;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4320,480,0 chrXIV 707000 . G A 3974.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.84;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3974,441,0 chrXIV 707011 . G C 3215 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=19.72;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3248,366,0 chrXIV 707029 . T C 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.599;HaplotypeScore=5.0628;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-0.707;QD=20.01;ReadPosRankSum=1.708;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2874,327,0 chrXIV 707187 . G A 4090.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.78;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4090,447,0 chrXIV 707332 . T C 3741.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.3641;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=18.99;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3741,429,0 chrXIV 707352 . G A 4296.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.85;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4296,468,0 chrXIV 707593 . G A 4105.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.19;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4105,447,0 chrXIV 707734 . G A 4453.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.60;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4453,507,0 chrXIV 707760 . T C 3998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.789;QD=17.85;ReadPosRankSum=1.717;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:3998,453,0 chrXIV 707765 . A G 3917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=235;Dels=0.00;FS=5.040;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-0.498;QD=16.67;ReadPosRankSum=1.702;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,232:235:99:3917,456,0 chrXIV 708561 . C G 5010.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.50;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5010,561,0 chrXIV 708768 . C T 4580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=199;Dels=0.00;FS=3.099;HaplotypeScore=14.9828;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.507;QD=23.02;ReadPosRankSum=-1.277;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4580,495,0 chrXIV 708870 . C T 6665.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.47;SB=-2.958e+03 GT:AD:DP:GQ:PL 1/1:0,284:284:99:6665,721,0 chrXIV 708932 . C T 5752.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=17.1990;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.29;SB=-2.452e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5752,630,0 chrXIV 709011 . A G 5968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=268;Dels=0.00;FS=6.371;HaplotypeScore=15.1751;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.217;QD=22.27;ReadPosRankSum=2.413;SB=-3.314e+03 GT:AD:DP:GQ:PL 1/1:2,264:268:99:5968,663,0 chrXIV 709059 . T C 6315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=312;Dels=0.00;FS=6.956;HaplotypeScore=21.4118;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.266;QD=20.24;ReadPosRankSum=2.418;SB=-3.429e+03 GT:AD:DP:GQ:PL 1/1:2,307:312:99:6315,708,0 chrXIV 709119 . G T 5763.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=25.0854;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.88;SB=-3.030e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:5763,630,0 chrXIV 709317 . C T 4140.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.2268;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.79;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4140,459,0 chrXIV 709569 . G A 4148.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4148,456,0 chrXIV 709675 . G A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.38;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3737,417,0 chrXIV 709827 . A G 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=123;Dels=0.00;FS=5.383;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.116;QD=17.82;ReadPosRankSum=2.843;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:3,119:123:99:2225,261,0 chrXIV 709906 . T C 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.691;DP=140;Dels=0.00;FS=12.081;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.086;QD=18.68;ReadPosRankSum=2.950;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:2648,291,0 chrXIV 709917 . T A 2844 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.96;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2877,324,0 chrXIV 710457 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3266,354,0 chrXIV 710643 . C A 2848 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.08;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2881,318,0 chrXIV 710685 . C G 2498 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2531,282,0 chrXIV 710751 . C T 2557 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.63;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2590,291,0 chrXIV 711379 . G T 2753 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=16.4653;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.57;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2786,297,0 chrXIV 711809 . C T 6546.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=8.8671;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.89;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,286:286:99:6546,741,0 chrXIV 711951 . G A 6716.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=11.2124;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.79;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,323:323:99:6716,741,0 chrXIV 711992 . A G 5877.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.289;QD=21.06;ReadPosRankSum=2.975;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:3,276:279:99:5877,663,0 chrXIV 712028 . A T 4141.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.8653;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.10;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4141,468,0 chrXIV 712211 . A G 4885.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=21.1234;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.15;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4885,546,0 chrXIV 712253 . A G 4638.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=221;Dels=0.00;FS=9.190;HaplotypeScore=14.0259;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-1.886;QD=20.99;ReadPosRankSum=2.404;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:2,216:221:99:4638,543,0 chrXIV 712295 . A G 4728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=233;Dels=0.00;FS=3.361;HaplotypeScore=4.4893;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.478;QD=20.29;ReadPosRankSum=1.687;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:4728,540,0 chrXIV 712301 . T C 4649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=0.793;QD=19.62;ReadPosRankSum=1.717;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:1,235:237:99:4649,528,0 chrXIV 712325 . C T 4652.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=7.2125;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=18.91;SB=-3.030e+03 GT:AD:DP:GQ:PL 1/1:0,246:246:99:4652,522,0 chrXIV 712361 . C T 4327.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.9445;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=18.81;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4327,480,0 chrXIV 712646 . T C 4050.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.469;QD=22.13;ReadPosRankSum=1.713;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:1,180:183:99:4050,456,0 chrXIV 712658 . C T 4019.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.71;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4019,438,0 chrXIV 713113 . G A 4289.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.72;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4289,489,0 chrXIV 713149 . G A 4687.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=12.6942;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.94;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,232:235:99:4687,516,0 chrXIV 713401 . A G 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=151;Dels=0.00;FS=3.001;HaplotypeScore=11.5266;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.991;QD=20.32;ReadPosRankSum=2.417;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3101,345,0 chrXIV 713717 . G A 2600 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.31;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2633,300,0 chrXIV 713741 . C T 2306 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.59;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2339,252,0 chrXIV 713775 . C T 2687 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.33;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2720,297,0 chrXIV 713826 . T C 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.742;QD=23.65;ReadPosRankSum=1.706;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3179,363,0 chrXIV 713967 . A G 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=3.174;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=0.706;QD=18.15;ReadPosRankSum=1.706;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2483,279,0 chrXIV 714025 . C A 4265.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.76;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,192:196:99:4265,468,0 chrXIV 714672 . C G 3625.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.7923;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.95;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3625,417,0 chrXIV 715182 . A G 4786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=226;Dels=0.00;FS=2.867;HaplotypeScore=12.9546;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-0.353;QD=21.18;ReadPosRankSum=2.428;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:4786,552,0 chrXIV 715380 . C T 2800 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.04;FS=0.000;HaplotypeScore=12.2417;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=17.61;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2833,312,0 chrXIV 715383 . T C 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.830;DP=155;Dels=0.00;FS=6.201;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-1.598;QD=17.34;ReadPosRankSum=4.192;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:7,148:155:99:2721,306,0 chrXIV 715546 . A T 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.133;QD=23.42;ReadPosRankSum=1.706;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3148,342,0 chrXIV 716055 . G A 2685 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.95;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2718,306,0 chrXIV 716086 . A C 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=6.620;HaplotypeScore=7.2011;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.272;QD=23.07;ReadPosRankSum=2.341;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2663,297,0 chrXIV 716316 . C T 1829 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.66;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1862,204,0 chrXIV 716325 . G A 1935 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1942;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.50;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1968,216,0 chrXIV 716522 . T C 1279 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.97;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1312,144,0 chrXIV 716564 . G A 944 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.48;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:977,108,0 chrXIV 716912 . T C 1912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.046;QD=23.60;ReadPosRankSum=2.389;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1945,216,0 chrXIV 716972 . A G 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.928;QD=21.85;ReadPosRankSum=1.670;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2480,279,0 chrXIV 716990 . C T 2418 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.40;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2451,261,0 chrXIV 717023 . A G 2412 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.44;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,112:118:99:2445,282,0 chrXIV 717065 . G A 2652 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.67;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2685,300,0 chrXIV 717134 . A G 2874 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.13;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2907,342,0 chrXIV 717218 . C T 2728 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.65;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2761,309,0 chrXIV 717379 . T C 3162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=162;Dels=0.00;FS=3.024;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-0.359;QD=19.52;ReadPosRankSum=2.404;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3195,363,0 chrXIV 717380 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.65;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3256,369,0 chrXIV 717528 . T A 5396.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=19.9756;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.67;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5396,582,0 chrXIV 717562 . A C 4833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=216;Dels=0.00;FS=3.898;HaplotypeScore=16.1434;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-1.043;QD=22.38;ReadPosRankSum=1.699;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:1,210:216:99:4833,540,0 chrXIV 717658 . C T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.44;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3770,411,0 chrXIV 717731 . C A 4309.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=19.0569;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.24;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4309,480,0 chrXIV 717904 . A G 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.340;DP=162;Dels=0.00;FS=12.648;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.301;QD=23.06;ReadPosRankSum=3.340;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:4,158:162:99:3735,417,0 chrXIV 718033 . G A 3831.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.80;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3831,417,0 chrXIV 718496 . A G 2181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.140;DP=102;Dels=0.00;FS=5.120;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.202;QD=21.38;ReadPosRankSum=3.368;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:4,96:102:99:2214,246,0 chrXIV 718667 . C T 2298 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=24.19;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2331,255,0 chrXIV 718741 . G A 2614 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.93;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2647,300,0 chrXIV 718839 . G C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=0.17;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:6:50,6,0 chrXIV 719201 . A C 3157 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.86;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3190,357,0 chrXIV 719586 . G A 4166.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.7451;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.04;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4166,468,0 chrXIV 719595 . G A 3679.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.312;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.3831;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.464;QD=19.78;ReadPosRankSum=-1.070;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:3679,371,0 chrXIV 719787 . C T 2571 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=18.63;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2604,282,0 chrXIV 719790 . C T 2442 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=17.32;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2475,273,0 chrXIV 719815 . A G 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=160;Dels=0.00;FS=3.094;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.827;QD=16.72;ReadPosRankSum=1.666;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,156:160:99:2708,309,0 chrXIV 719874 . G A 4423.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.37;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4423,501,0 chrXIV 719946 . G A 4505.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.9311;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.76;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4505,519,0 chrXIV 719952 . G A 4335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.486;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.7907;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=0.243;QD=20.26;ReadPosRankSum=-0.453;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4335,488,0 chrXIV 720135 . T C 6335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=273;Dels=0.00;FS=11.168;HaplotypeScore=16.7242;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=2.037;QD=23.21;ReadPosRankSum=2.937;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:3,269:273:99:6335,705,0 chrXIV 720381 . T C 2873.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-7.449;DP=385;Dels=0.00;FS=23.820;HaplotypeScore=16.2009;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;MQRankSum=4.975;QD=7.46;ReadPosRankSum=13.553;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:181,201:385:27:2906,27,0 chrXIV 720390 . C T 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.972;DP=385;Dels=0.00;FS=31.715;HaplotypeScore=21.8221;MLEAC=1;MLEAF=0.500;MQ=39.41;MQ0=0;MQRankSum=-6.454;QD=0.06;ReadPosRankSum=-9.951;SB=-1.617e+03 GT:AD:DP:GQ:PL 0/1:172,209:385:53:53,0,2312 chrXIV 720393 . T C 149.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.144;DP=390;Dels=0.01;FS=33.548;HaplotypeScore=21.7127;MLEAC=1;MLEAF=0.500;MQ=39.39;MQ0=0;MQRankSum=-5.132;QD=0.38;ReadPosRankSum=9.267;SB=-1.559e+03 GT:AD:DP:GQ:PL 0/1:168,219:388:99:179,0,2163 chrXIV 720527 . T G 4677.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.0735;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=21.16;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,217:221:99:4677,534,0 chrXIV 720829 . A G 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=3.050;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.721;QD=23.79;ReadPosRankSum=2.339;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2674,303,0 chrXIV 720905 . C T 1972 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2005,213,0 chrXIV 721332 . C G 2687 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.67;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2720,306,0 chrXIV 721369 . T C 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=148;Dels=0.00;FS=3.016;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.563;QD=21.09;ReadPosRankSum=2.399;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3154,357,0 chrXIV 721603 . A G 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=3.292;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=0.604;QD=21.79;ReadPosRankSum=1.692;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3813,438,0 chrXIV 721832 . T C 2058 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=17.90;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2091,246,0 chrXIV 721833 . C G 2142 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=18.96;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2175,249,0 chrXIV 721854 . C G 2083 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=20.22;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2116,240,0 chrXIV 721994 . A G 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=0.697;QD=24.61;ReadPosRankSum=-0.100;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2174,240,0 chrXIV 722023 . G A 2069 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=21.55;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2102,234,0 chrXIV 722025 . T C 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;MQRankSum=-0.752;QD=19.43;ReadPosRankSum=1.697;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1957,228,0 chrXIV 722083 . G T 1770 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=18.63;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1803,201,0 chrXIV 722293 . G A 140.06 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.05;FS=0.000;HaplotypeScore=25.3343;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=1.10;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,116:121:21:173,21,0 chrXIV 722345 . A G 2909 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.9803;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.55;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2942,327,0 chrXIV 722690 . A G 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.5740;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.196;QD=20.93;ReadPosRankSum=1.713;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3788,438,0 chrXIV 722746 . C T 3517.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.57;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3517,393,0 chrXIV 723395 . C T 3029 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=25.24;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3062,330,0 chrXIV 723495 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3420,369,0 chrXIV 723580 . G A 3629.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.35;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3629,393,0 chrXIV 723593 . C T 3113 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=19.10;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3146,345,0 chrXIV 723737 . G A 4017.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=14.9686;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.48;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4017,447,0 chrXIV 723962 . C T 2840 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.00;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2873,330,0 chrXIV 724160 . G A 2964 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.3524;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.30;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2997,333,0 chrXIV 724182 . A G 2916 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.70;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2949,333,0 chrXIV 724277 . T C 2567 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.57;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2600,291,0 chrXIV 724322 . T C 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.569;QD=21.32;ReadPosRankSum=1.653;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2869,321,0 chrXIV 724364 . A G 2920 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.2375;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.29;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2953,336,0 chrXIV 724425 . A G 3055 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.50;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3088,348,0 chrXIV 724486 . T C 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=136;Dels=0.00;FS=3.379;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-1.552;QD=21.97;ReadPosRankSum=1.706;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3021,342,0 chrXIV 724531 . T G 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=121;Dels=0.00;FS=3.048;HaplotypeScore=8.7052;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.305;QD=23.10;ReadPosRankSum=2.408;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:2,115:121:99:2828,312,0 chrXIV 724600 . T C 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=2.692;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=0.620;QD=22.95;ReadPosRankSum=2.409;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2810,318,0 chrXIV 724624 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.34;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3116,357,0 chrXIV 724671 . T C 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=138;Dels=0.01;FS=2.996;HaplotypeScore=5.2236;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=-1.184;QD=18.17;ReadPosRankSum=2.413;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2541,291,0 chrXIV 724673 . A T 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=134;Dels=0.00;FS=10.372;HaplotypeScore=4.2110;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;MQRankSum=-0.361;QD=19.62;ReadPosRankSum=2.888;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:2662,288,0 chrXIV 724686 . G T 2756 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=18.75;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2789,312,0 chrXIV 724724 . A G 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=147;Dels=0.00;FS=7.622;HaplotypeScore=10.1780;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.480;QD=18.68;ReadPosRankSum=2.382;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:2779,315,0 chrXIV 724948 . G T 4357.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=15.0095;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.68;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4357,474,0 chrXIV 725093 . C G 3382.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.5617;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=23.49;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3382,372,0 chrXIV 725113 . T A 2295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=7.819;HaplotypeScore=4.3538;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-1.551;QD=19.96;ReadPosRankSum=1.702;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2328,255,0 chrXIV 725142 . T C 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=127;Dels=0.00;FS=13.257;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.416;QD=19.95;ReadPosRankSum=2.411;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2567,285,0 chrXIV 725230 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=22.21;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2809,318,0 chrXIV 725251 . A C 2619 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=21.29;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2652,303,0 chrXIV 725267 . C A 2712 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=21.35;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2745,312,0 chrXIV 725295 . A T 2758 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=21.22;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2791,312,0 chrXIV 725367 . A G 2036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=119;Dels=0.00;FS=8.631;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;MQRankSum=-0.198;QD=17.11;ReadPosRankSum=2.408;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2069,240,0 chrXIV 725420 . T A 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-0.204;QD=20.32;ReadPosRankSum=1.477;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2796,300,0 chrXIV 725511 . A G 2425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;MQRankSum=-0.129;QD=20.04;ReadPosRankSum=1.703;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2458,276,0 chrXIV 725512 . T C 2491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=6.490;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;MQRankSum=0.030;QD=20.09;ReadPosRankSum=2.370;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2524,282,0 chrXIV 725568 . C G 2570 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=17.6290;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=18.23;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2603,303,0 chrXIV 725820 . T C 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=125;Dels=0.00;FS=3.375;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-1.704;QD=23.42;ReadPosRankSum=1.592;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2960,339,0 chrXIV 725856 . G A 2704 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=23.31;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2737,297,0 chrXIV 725867 . A G 2538 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=22.07;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2571,291,0 chrXIV 725883 . A C 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=0.568;QD=21.66;ReadPosRankSum=1.616;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2632,294,0 chrXIV 725988 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=23.39;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2699,294,0 chrXIV 726053 . C T 2128 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.94;MQ0=0;QD=24.18;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2161,240,0 chrXIV 726058 . A C 2138 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=0;QD=23.49;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2171,249,0 chrXIV 726086 . G T 2065 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=23.74;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2098,228,0 chrXIV 726235 . G A 1300 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.57;MQ0=0;QD=22.03;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1333,147,0 chrXIV 726237 . T C 1061 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.67;MQ0=0;QD=19.65;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1094,129,0 chrXIV 726242 . C T 1003 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;QD=21.34;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1036,114,0 chrXIV 726878 . C T 21.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.74;MQ0=20;MQRankSum=1.231;QD=0.84;ReadPosRankSum=1.231;SB=-6.067e-02 GT:AD:DP:GQ:PL 0/1:22,2:25:16:51,0,16 chrXIV 727111 . G A 2632 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=19.79;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2665,303,0 chrXIV 727112 . G A 2792 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;QD=20.84;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2825,306,0 chrXIV 727189 . G A 3498.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=23.32;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3498,372,0 chrXIV 727231 . A C 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=1.241;QD=22.13;ReadPosRankSum=1.655;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2999,333,0 chrXIV 727273 . G A 2027 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=19.87;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2060,234,0 chrXIV 727332 . A G 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-1.068;QD=22.65;ReadPosRankSum=2.933;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2389,267,0 chrXIV 727466 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=24.34;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1445,159,0 chrXIV 727505 . T C 1898 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=18.0673;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;QD=18.98;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1931,222,0 chrXIV 727584 . C T 3574.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=24.31;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3574,396,0 chrXIV 727650 . A T 1990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=4.727;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=0.106;QD=20.31;ReadPosRankSum=1.697;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2023,222,0 chrXIV 727684 . T C 1806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=111;Dels=0.00;FS=3.047;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=40.64;MQ0=0;MQRankSum=0.876;QD=16.27;ReadPosRankSum=2.405;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:1839,207,0 chrXIV 727701 . C A 1730 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.34;MQ0=0;QD=14.54;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1763,198,0 chrXIV 727708 . G A 1718 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.15;MQ0=0;QD=13.97;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1751,189,0 chrXIV 727716 . G A 1799 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=0;QD=13.73;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1832,201,0 chrXIV 727725 . T C 1953 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=35.40;MQ0=0;QD=14.15;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1986,222,0 chrXIV 727758 . G A 2508 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=15.67;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2541,282,0 chrXIV 727765 . T C 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=4.242;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;MQRankSum=-0.406;QD=15.52;ReadPosRankSum=1.711;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:2548,291,0 chrXIV 727778 . A G 2521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;MQRankSum=0.380;QD=15.19;ReadPosRankSum=1.711;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:2554,288,0 chrXIV 727814 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.8659;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.22;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3345,360,0 chrXIV 727862 . C T 3075 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.78;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3108,351,0 chrXIV 728022 . A C 3401.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=23.46;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3401,375,0 chrXIV 728182 . T C 2553 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=19.05;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2586,300,0 chrXIV 728185 . C A 2573 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.64;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2606,288,0 chrXIV 728255 . C T 2543 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.18;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2576,288,0 chrXIV 728276 . T A 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-1.658;QD=22.14;ReadPosRankSum=1.683;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3243,348,0 chrXIV 728729 . A G 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=189;Dels=0.00;FS=3.470;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.412;QD=16.98;ReadPosRankSum=1.714;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3243,381,0 chrXIV 728744 . G A 3364.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=15.79;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:3364,372,0 chrXIV 728762 . A T 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=225;Dels=0.00;FS=3.310;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-1.024;QD=16.62;ReadPosRankSum=1.670;SB=-2.791e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:3740,408,0 chrXIV 728801 . A G 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.3832;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;MQRankSum=-0.216;QD=15.94;ReadPosRankSum=2.188;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:2,186:190:99:3062,342,0 chrXIV 728842 . G A 3685.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.68;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3685,399,0 chrXIV 728858 . T C 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=197;Dels=0.00;FS=2.944;HaplotypeScore=14.4498;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=0.658;QD=19.39;ReadPosRankSum=2.425;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:3819,435,0 chrXIV 729293 . G A 3712.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.6254;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.96;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3712,402,0 chrXIV 729336 . G A 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=176;Dels=0.00;FS=3.010;HaplotypeScore=10.9663;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.458;QD=21.72;ReadPosRankSum=0.717;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3822,420,0 chrXIV 729511 . C T 5681.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=14.3249;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=23.87;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,235:238:99:5681,615,0 chrXIV 729995 . C G 4494.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=21.6656;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=19.97;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,220:225:99:4494,516,0 chrXIV 730427 . G A 2608 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.92;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2641,297,0 chrXIV 730652 . G T 2453 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.2203;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.05;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2486,270,0 chrXIV 730789 . A G 1539 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1572,174,0 chrXIV 730853 . T C 1581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=5.740;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.716;QD=21.08;ReadPosRankSum=1.640;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1614,183,0 chrXIV 730870 . G A 1728 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.15;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1761,189,0 chrXIV 730973 . A G 1320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=56;Dels=0.00;FS=3.522;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.283;QD=23.57;ReadPosRankSum=1.668;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:1,53:56:99:1353,153,0 chrXIV 731057 . C G 1746 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.25;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1779,201,0 chrXIV 731177 . A T 2863 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.0871;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2896,312,0 chrXIV 731231 . A G 3892.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3892,429,0 chrXIV 731735 . T C 4650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.605;DP=205;Dels=0.00;FS=2.807;HaplotypeScore=12.0819;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.647;QD=22.68;ReadPosRankSum=1.719;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:2,203:205:99:4650,516,0 chrXIV 731846 . T C 4026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=195;Dels=0.00;FS=10.314;HaplotypeScore=19.4971;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.339;QD=20.65;ReadPosRankSum=2.901;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:3,190:195:99:4026,456,0 chrXIV 732037 . C T 4473.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.99;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4473,480,0 chrXIV 732102 . C G 4151.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.72;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4151,477,0 chrXIV 732158 . A C 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=15.9616;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.787;QD=22.87;ReadPosRankSum=1.687;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3522,396,0 chrXIV 732220 . A G 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=182;Dels=0.00;FS=3.182;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.986;QD=21.48;ReadPosRankSum=1.713;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3910,456,0 chrXIV 732476 . T C 4183.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=201;Dels=0.00;FS=8.102;HaplotypeScore=15.0629;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.055;QD=20.81;ReadPosRankSum=2.314;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4183,480,0 chrXIV 732854 . G A 3320.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.9458;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=18.34;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,177:181:99:3320,372,0 chrXIV 732856 . A C 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.207;DP=181;Dels=0.00;FS=4.563;HaplotypeScore=10.3118;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=0.674;QD=17.71;ReadPosRankSum=2.926;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:4,176:181:99:3238,369,0 chrXIV 732983 . G A 5016.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.004;DP=216;Dels=0.00;FS=3.810;HaplotypeScore=18.7036;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.117;QD=23.22;ReadPosRankSum=0.405;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:5016,544,0 chrXIV 733142 . C T 5097.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.5274;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.60;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5097,558,0 chrXIV 733231 . G A 4956.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.3913;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.43;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4956,555,0 chrXIV 733258 . A C 230.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=201.3730;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=0.323;QD=1.04;ReadPosRankSum=3.397;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:4,215:222:15:263,15,0 chrXIV 733303 . T A 5218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=231;Dels=0.00;FS=3.184;HaplotypeScore=14.3017;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-0.083;QD=22.59;ReadPosRankSum=1.656;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:5218,576,0 chrXIV 733411 . T G 6344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=287;Dels=0.00;FS=2.510;HaplotypeScore=16.1563;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.481;QD=22.10;ReadPosRankSum=2.961;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:3,283:287:99:6344,743,0 chrXIV 733695 . A G 4980.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=22.5235;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.10;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:4980,573,0 chrXIV 734073 . C T 2568 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.38;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2601,279,0 chrXIV 734085 . G A 2520 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.69;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2553,285,0 chrXIV 734296 . C T 4345.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=23.74;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4345,480,0 chrXIV 734519 . C T 4534.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.5773;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.90;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4534,492,0 chrXIV 734746 . G A 4029.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4029,438,0 chrXIV 734861 . G T 5852.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.08;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,263:265:99:5852,648,0 chrXIV 734887 . C T 6523.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.21;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,281:281:99:6523,709,0 chrXIV 734975 . A G 6818.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=15.5006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-2.725e+03 GT:AD:DP:GQ:PL 1/1:0,285:287:99:6818,774,0 chrXIV 735047 . T C 7245.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=336;Dels=0.00;FS=6.325;HaplotypeScore=18.4999;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.106;QD=21.56;ReadPosRankSum=2.332;SB=-4.135e+03 GT:AD:DP:GQ:PL 1/1:2,333:336:99:7245,807,0 chrXIV 735112 . A G 6988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=342;Dels=0.00;FS=2.999;HaplotypeScore=29.8056;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.308;QD=20.43;ReadPosRankSum=0.213;SB=-3.782e+03 GT:AD:DP:GQ:PL 1/1:2,337:342:99:6988,804,0 chrXIV 735174 . A G 7346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;DP=345;Dels=0.00;FS=9.070;HaplotypeScore=23.7503;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.268;QD=21.29;ReadPosRankSum=3.356;SB=-4.069e+03 GT:AD:DP:GQ:PL 1/1:4,341:345:99:7346,860,0 chrXIV 735440 . A G 4629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=198;Dels=0.00;FS=5.910;HaplotypeScore=16.7177;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.515;QD=23.38;ReadPosRankSum=2.964;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:3,194:198:99:4629,522,0 chrXIV 735817 . A G 2764 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=20.94;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2797,324,0 chrXIV 735827 . A G 2965 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=22.29;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2998,339,0 chrXIV 735834 . A T 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=3.305;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;MQRankSum=-0.266;QD=21.86;ReadPosRankSum=1.707;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3028,327,0 chrXIV 735856 . G A 2887 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=21.87;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2920,327,0 chrXIV 735889 . C T 2427 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=18.96;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2460,270,0 chrXIV 735893 . G A 2293 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=17.37;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2326,258,0 chrXIV 735975 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=22.58;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2946,330,0 chrXIV 736014 . C T 2570 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=21.60;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2603,300,0 chrXIV 736035 . C A 2661 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=22.17;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2694,300,0 chrXIV 736065 . A G 2400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;MQRankSum=1.495;QD=20.51;ReadPosRankSum=1.703;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2433,282,0 chrXIV 736111 . C T 2177 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=16.0905;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=17.70;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2210,243,0 chrXIV 736153 . A C 2033 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=13.83;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2066,231,0 chrXIV 736251 . T C 1832 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=14.66;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1865,210,0 chrXIV 736287 . T C 1477 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.357;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=36.20;MQ0=0;MQRankSum=-1.477;QD=10.55;ReadPosRankSum=1.707;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,135:140:99:1510,146,0 chrXIV 736290 . G C 1398 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.30;MQ0=0;QD=10.36;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1431,165,0 chrXIV 736291 . C G 1393 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.78;MQ0=0;QD=10.17;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:1426,165,0 chrXIV 736308 . T C 1837 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.37;MQ0=0;QD=11.63;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:1870,213,0 chrXIV 736327 . T A 2322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.6503;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;MQRankSum=-1.120;QD=14.07;ReadPosRankSum=1.626;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2355,261,0 chrXIV 736429 . C T 3429.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=22.41;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3429,381,0 chrXIV 736458 . G A 3385.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;QD=19.45;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3385,387,0 chrXIV 736460 . C T 3167 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;QD=18.31;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3200,369,0 chrXIV 736489 . T C 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=191;Dels=0.00;FS=3.516;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=43.34;MQ0=0;MQRankSum=-1.315;QD=17.65;ReadPosRankSum=1.714;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:3372,375,0 chrXIV 736651 . A C 4260.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.4274;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.78;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4260,483,0 chrXIV 736686 . C T 3888.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=22.87;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3888,429,0 chrXIV 736739 . A G 5231.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-1.001;QD=24.00;ReadPosRankSum=1.716;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:1,217:218:99:5231,576,0 chrXIV 736767 . T A 5644.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=235;Dels=0.00;FS=11.077;HaplotypeScore=3.6499;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-0.423;QD=24.02;ReadPosRankSum=2.962;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:3,232:235:99:5644,610,0 chrXIV 736790 . T C 5146.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=22.87;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5146,591,0 chrXIV 736802 . A T 4763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=221;Dels=0.00;FS=2.925;HaplotypeScore=5.7711;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-0.625;QD=21.55;ReadPosRankSum=2.393;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:4763,531,0 chrXIV 736859 . G A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=20.84;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3376,372,0 chrXIV 736950 . G C 3427.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.4583;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.90;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3427,381,0 chrXIV 737054 . G T 2528 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.45;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2561,291,0 chrXIV 737061 . A G 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=0.866;QD=19.95;ReadPosRankSum=1.706;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2686,303,0 chrXIV 737126 . A C 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.224;QD=20.13;ReadPosRankSum=1.709;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3093,351,0 chrXIV 737156 . C T 3088 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.22;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3121,342,0 chrXIV 737202 . A G 2438 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.39;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,110:114:99:2471,288,0 chrXIV 737420 . A T 2582 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.52;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2615,282,0 chrXIV 737636 . C T 2980 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.92;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3013,336,0 chrXIV 737846 . C T 2637 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=18.97;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2670,300,0 chrXIV 737861 . T C 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.672;QD=19.41;ReadPosRankSum=1.685;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2886,336,0 chrXIV 737900 . A G 2940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=150;Dels=0.00;FS=6.536;HaplotypeScore=6.8685;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-1.071;QD=19.60;ReadPosRankSum=2.416;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:2,146:150:99:2973,330,0 chrXIV 737930 . T C 2941 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.86;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2974,345,0 chrXIV 737975 . C G 2192 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.93;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2225,249,0 chrXIV 738000 . C A 2102 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.04;FS=0.000;HaplotypeScore=7.1435;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=16.17;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2135,234,0 chrXIV 738020 . A G 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=132;Dels=0.00;FS=6.401;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=-0.391;QD=17.30;ReadPosRankSum=2.373;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:2,128:132:99:2317,261,0 chrXIV 738023 . A C 2257 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=16.47;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2290,261,0 chrXIV 738132 . A G 2643 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.59;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2676,300,0 chrXIV 738251 . A T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=23.84;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3647,399,0 chrXIV 738340 . G A 4682.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=25.31;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4682,516,0 chrXIV 738436 . G A 2681 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=23.52;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2714,294,0 chrXIV 738443 . C T 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.919;DP=117;Dels=0.00;FS=3.979;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;MQRankSum=-0.015;QD=21.39;ReadPosRankSum=-1.461;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2536,269,0 chrXIV 738473 . A C 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;MQRankSum=-1.730;QD=22.99;ReadPosRankSum=2.403;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2470,276,0 chrXIV 738533 . C T 3014 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=37.22;MQ0=0;QD=20.64;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3047,351,0 chrXIV 738536 . G A 2903 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;QD=20.30;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2936,333,0 chrXIV 738545 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=0;QD=20.06;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3082,342,0 chrXIV 738554 . T G 2826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=149;Dels=0.00;FS=11.074;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.15;MQ0=0;MQRankSum=-1.724;QD=18.97;ReadPosRankSum=2.417;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:2,147:149:99:2859,327,0 chrXIV 738591 . A G 1978 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.84;MQ0=0;QD=15.57;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2011,225,0 chrXIV 738603 . T C 1961 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.23;MQ0=0;QD=15.32;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1994,219,0 chrXIV 738607 . A C 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=3.472;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.20;MQ0=0;MQRankSum=-1.007;QD=15.43;ReadPosRankSum=1.705;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2024,222,0 chrXIV 738645 . C G 1650 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.86;MQ0=0;QD=16.67;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1683,189,0 chrXIV 738646 . G C 1593 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.86;MQ0=0;QD=16.09;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1626,189,0 chrXIV 738651 . C A 1557 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.42;MQ0=0;QD=15.89;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1590,180,0 chrXIV 738674 . T A 1269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.41;MQ0=0;MQRankSum=-1.692;QD=14.59;ReadPosRankSum=1.692;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1302,147,0 chrXIV 738697 . C A 898 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=0;QD=13.40;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:931,108,0 chrXIV 738706 . A G 776 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=4.486;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=0;MQRankSum=-1.674;QD=13.15;ReadPosRankSum=1.674;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:96:809,96,0 chrXIV 738707 . C A 802 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.02;MQ0=0;QD=13.37;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:96:835,96,0 chrXIV 738719 . C G 987 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.15;MQ0=0;QD=12.82;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1020,123,0 chrXIV 738758 . T A 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=108;Dels=0.00;FS=5.784;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=42.38;MQ0=0;MQRankSum=-2.150;QD=17.39;ReadPosRankSum=2.879;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:1911,213,0 chrXIV 738768 . C A 2226 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.9598;MLEAC=2;MLEAF=1.00;MQ=42.06;MQ0=0;QD=19.70;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2259,249,0 chrXIV 738775 . C T 2317 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;QD=18.84;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2350,255,0 chrXIV 738859 . G A 2650 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=23.04;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2683,291,0 chrXIV 738881 . A T 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.775;DP=112;Dels=0.00;FS=11.479;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;MQRankSum=1.081;QD=20.93;ReadPosRankSum=2.937;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2377,255,0 chrXIV 738952 . A G 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=6.657;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=1.594;QD=23.15;ReadPosRankSum=2.413;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3182,351,0 chrXIV 738960 . A G 3003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=141;Dels=0.00;FS=7.446;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=1.419;QD=21.30;ReadPosRankSum=2.413;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:2,134:141:99:3036,342,0 chrXIV 739015 . T C 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=13.0165;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=0.000;QD=21.57;ReadPosRankSum=1.711;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3623,408,0 chrXIV 739084 . A G 4124.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.4300;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.29;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4124,486,0 chrXIV 739126 . T C 3667.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.772;QD=22.09;ReadPosRankSum=1.690;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3667,423,0 chrXIV 739253 . A G 4259.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.3038;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.849;QD=21.30;ReadPosRankSum=1.645;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4259,489,0 chrXIV 739568 . T C 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.479;QD=23.48;ReadPosRankSum=1.687;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3569,408,0 chrXIV 739896 . C T 4026.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.01;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4026,444,0 chrXIV 740385 . A T 4222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-1.388;QD=24.55;ReadPosRankSum=1.712;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4222,459,0 chrXIV 740415 . T C 3777.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.9564;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.35;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3777,420,0 chrXIV 740460 . C T 3736.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.6671;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.64;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3736,435,0 chrXIV 740592 . C T 3649.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.2170;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=19.72;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3649,396,0 chrXIV 740598 . G A 3620.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.67;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3620,396,0 chrXIV 741004 . A G 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=127;Dels=0.00;FS=4.472;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.330;QD=22.66;ReadPosRankSum=1.677;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2911,327,0 chrXIV 741133 . A C 3806.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.5579;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.65;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3806,423,0 chrXIV 741165 . G T 4110.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.22;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4110,453,0 chrXIV 741378 . G C 5538.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=14.1068;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.98;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5538,630,0 chrXIV 741432 . A G 5255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=226;Dels=0.00;FS=6.849;HaplotypeScore=15.0233;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.418;QD=23.25;ReadPosRankSum=2.384;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:2,224:226:99:5255,588,0 chrXIV 741479 . A G 4860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=207;Dels=0.00;FS=6.976;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.741;QD=23.48;ReadPosRankSum=2.402;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4860,543,0 chrXIV 741663 . A G 4784.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.57;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4784,534,0 chrXIV 741976 . C A 3790.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.7572;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.29;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3790,417,0 chrXIV 742180 . G A 3587.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.85;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3587,393,0 chrXIV 742206 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=3.239;HaplotypeScore=3.4666;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-1.399;QD=20.53;ReadPosRankSum=1.710;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3256,360,0 chrXIV 742217 . G C 3027 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.66;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3060,351,0 chrXIV 742235 . T A 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=3.465;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=1.617;QD=19.81;ReadPosRankSum=1.640;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3044,333,0 chrXIV 742451 . A G 2012 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=21.63;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2045,231,0 chrXIV 742485 . T C 2127 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=21.06;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2160,243,0 chrXIV 742517 . C G 2088 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=18.98;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2121,240,0 chrXIV 742540 . G A 2483 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.02;FS=0.000;HaplotypeScore=21.7054;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.69;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2516,279,0 chrXIV 742676 . T G 3586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.370;QD=23.91;ReadPosRankSum=1.663;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3586,399,0 chrXIV 742733 . C A 3382.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=21.14;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3382,366,0 chrXIV 742739 . G A 2926 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=19.00;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2959,321,0 chrXIV 742767 . C T 2946 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=18.41;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:2979,321,0 chrXIV 742847 . C T 5510.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=13.9491;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.87;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5510,621,0 chrXIV 743034 . G A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=20.75;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4067,453,0 chrXIV 743053 . G A 3976.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=18.75;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:3976,432,0 chrXIV 743056 . T C 3894.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.28;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:3894,435,0 chrXIV 743089 . G A 4653.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=17.4545;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=18.39;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:4653,510,0 chrXIV 743137 . T C 4927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=226;Dels=0.00;FS=10.400;HaplotypeScore=14.1144;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.543;QD=21.80;ReadPosRankSum=2.417;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:2,222:226:99:4927,561,0 chrXIV 743177 . C T 4135.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=22.1660;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.10;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4135,453,0 chrXIV 743235 . T C 4221.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=179;Dels=0.00;FS=5.526;HaplotypeScore=14.1566;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-1.051;QD=23.58;ReadPosRankSum=2.915;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:3,175:179:99:4221,477,0 chrXIV 743262 . C A 5104.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=25.14;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5104,555,0 chrXIV 743408 . A G 3884.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.58;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3884,432,0 chrXIV 743430 . A G 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.362;DP=196;Dels=0.00;FS=8.945;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=0.343;QD=19.30;ReadPosRankSum=3.389;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:4,192:196:99:3782,429,0 chrXIV 743434 . T C 3905.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=20.13;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:3905,426,0 chrXIV 743441 . T G 3761.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.29;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3761,429,0 chrXIV 743679 . G C 2587 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6298;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=21.92;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2620,294,0 chrXIV 743709 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=21.26;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2265,255,0 chrXIV 743736 . C A 2301 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=22.12;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2334,261,0 chrXIV 743766 . A C 1993 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.6275;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=21.20;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2026,234,0 chrXIV 743791 . C T 1509 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;QD=21.25;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1542,174,0 chrXIV 743793 . G A 1499 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=21.41;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1532,174,0 chrXIV 743834 . T C 552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.901;DP=50;Dels=0.00;FS=4.949;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;MQRankSum=-1.594;QD=11.04;ReadPosRankSum=-0.346;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:46:585,46,0 chrXIV 743855 . C T 592 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.48;MQ0=0;QD=11.84;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:69:625,69,0 chrXIV 743856 . A G 574 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.48;MQ0=0;QD=11.48;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:69:607,69,0 chrXIV 743863 . A G 536 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.58;MQ0=0;MQRankSum=-0.346;QD=9.75;ReadPosRankSum=1.669;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:66:569,66,0 chrXIV 743877 . A G 602 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.30;MQ0=0;QD=10.56;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:72:635,72,0 chrXIV 743903 . G A 823 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.87;MQ0=0;QD=14.19;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:856,102,0 chrXIV 743905 . C A 841 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.87;MQ0=0;QD=14.50;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:874,102,0 chrXIV 743957 . G T 1239 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;QD=14.75;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1272,144,0 chrXIV 743970 . C A 1166 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.89;MQ0=0;QD=12.96;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1199,141,0 chrXIV 744001 . A C 910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=89;Dels=0.00;FS=4.309;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-1.499;QD=10.22;ReadPosRankSum=1.693;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:943,117,0 chrXIV 744011 . T C 666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=0;MQRankSum=-1.429;QD=8.32;ReadPosRankSum=1.689;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:87:699,87,0 chrXIV 744028 . G C 468 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=0;QD=6.78;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:63:501,63,0 chrXIV 744031 . T G 504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.02;MQ0=0;MQRankSum=-1.630;QD=7.30;ReadPosRankSum=1.681;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:66:537,66,0 chrXIV 744101 . G A 371 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.74;MQ0=0;QD=10.60;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:45:404,45,0 chrXIV 744105 . G A 391 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.70;MQ0=0;QD=10.03;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:51:424,51,0 chrXIV 744115 . G A 683 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.05;MQ0=0;QD=13.66;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:81:716,81,0 chrXIV 744147 . A G 1227 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=18.31;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1260,144,0 chrXIV 744183 . G A 1871 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=20.12;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1904,213,0 chrXIV 744202 . T A 2238 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=45.80;MQ0=0;QD=20.72;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2271,252,0 chrXIV 744238 . A G 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=3.531;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;MQRankSum=1.461;QD=21.77;ReadPosRankSum=1.702;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2537,285,0 chrXIV 744305 . C T 2962 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.0190;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=23.70;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2995,327,0 chrXIV 744345 . T C 2294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=-1.436;QD=19.61;ReadPosRankSum=1.673;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2327,264,0 chrXIV 744347 . T C 2322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=121;Dels=0.00;FS=2.508;HaplotypeScore=2.4370;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.892;QD=19.19;ReadPosRankSum=2.925;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2355,261,0 chrXIV 744471 . T C 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=3.558;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.501;QD=20.61;ReadPosRankSum=1.664;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3165,357,0 chrXIV 744626 . C G 2927 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.34;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2960,336,0 chrXIV 744823 . C T 3287.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.6783;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.15;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3287,360,0 chrXIV 744887 . T C 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.357;DP=156;Dels=0.00;FS=13.405;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.346;QD=18.81;ReadPosRankSum=3.243;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:4,150:156:99:2967,333,0 chrXIV 745002 . C T 3747.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3747,414,0 chrXIV 745289 . C T 3349.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.33;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3349,363,0 chrXIV 745341 . C T 3199 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.51;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3232,351,0 chrXIV 745342 . A G 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=157;Dels=0.00;FS=3.020;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.071;QD=19.74;ReadPosRankSum=2.418;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3132,354,0 chrXIV 745494 . A G 2347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=122;Dels=0.00;FS=2.667;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.461;QD=19.24;ReadPosRankSum=2.409;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:2,118:122:99:2380,267,0 chrXIV 745524 . A G 2360 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.00;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2393,276,0 chrXIV 745595 . T C 1765 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.27;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1798,213,0 chrXIV 745867 . A G 1928 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1961,216,0 chrXIV 745944 . A C 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=105;Dels=0.00;FS=6.849;HaplotypeScore=4.2461;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=1.395;QD=21.59;ReadPosRankSum=2.192;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2300,264,0 chrXIV 746230 . T C 1866 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=0;QD=21.20;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1899,219,0 chrXIV 746238 . A G 1794 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.97;MQ0=0;QD=20.62;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1827,210,0 chrXIV 746245 . T G 1622 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=20.02;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1655,192,0 chrXIV 746254 . T G 1474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;MQRankSum=-0.520;QD=18.42;ReadPosRankSum=1.689;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1507,177,0 chrXIV 746277 . G A 1148 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=52.1914;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;QD=16.40;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1181,129,0 chrXIV 746286 . T G 38.97 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.78;MQ0=0;QD=0.66;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:9:71,9,0 chrXIV 746338 . G T 847 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=36.66;MQ0=0;QD=12.46;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:96:880,96,0 chrXIV 746361 . C T 852 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=12.35;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:885,99,0 chrXIV 746386 . G A 1034 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=14.99;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1067,120,0 chrXIV 746416 . G C 666 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=11.10;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:84:699,84,0 chrXIV 746422 . A G 723 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=10.95;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:93:756,93,0 chrXIV 746431 . A G 710 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=0;QD=11.09;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:90:743,90,0 chrXIV 746539 . G A 1839 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=20.90;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1872,219,0 chrXIV 746557 . A C 1688 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;QD=19.86;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1721,198,0 chrXIV 746569 . C G 1566 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.02;MQ0=0;QD=19.57;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1599,183,0 chrXIV 746594 . C T 1328 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.89;MQ0=0;QD=17.03;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1361,153,0 chrXIV 746613 . C T 1541 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=17.92;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1574,177,0 chrXIV 746653 . G A 1875 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=19.74;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1908,210,0 chrXIV 746722 . A G 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;MQRankSum=-0.686;QD=20.33;ReadPosRankSum=1.667;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2188,246,0 chrXIV 746741 . G A 2060 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;QD=20.00;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2093,228,0 chrXIV 746746 . C T 1954 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=18.79;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1987,222,0 chrXIV 746866 . T C 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-1.496;QD=25.12;ReadPosRankSum=1.709;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3692,414,0 chrXIV 746926 . C T 2571 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=20.57;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2604,288,0 chrXIV 746931 . G T 2479 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=19.67;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2512,276,0 chrXIV 746951 . A G 1973 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=16.31;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2006,222,0 chrXIV 746952 . T C 2014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=122;Dels=0.00;FS=2.787;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;MQRankSum=-1.623;QD=16.51;ReadPosRankSum=2.409;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2047,228,0 chrXIV 747081 . A G 3153 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.90;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3186,357,0 chrXIV 747212 . T C 2310 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=22.00;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2343,264,0 chrXIV 747242 . C T 2332 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=23.32;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2365,258,0 chrXIV 747434 . A C 2539 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=18.67;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2572,288,0 chrXIV 747437 . T A 2647 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=-0.417;QD=19.32;ReadPosRankSum=1.682;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2680,297,0 chrXIV 747443 . T C 2502 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=135;Dels=0.00;FS=2.690;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=-0.938;QD=18.53;ReadPosRankSum=2.413;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2535,285,0 chrXIV 747445 . C T 2536 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=18.51;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2569,285,0 chrXIV 747531 . A G 3612.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.50;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3612,420,0 chrXIV 747641 . A C 4180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.0320;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-0.285;QD=23.22;ReadPosRankSum=2.019;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:2,175:180:99:4180,477,0 chrXIV 747684 . C T 4751.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=23.87;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4751,513,0 chrXIV 747711 . C A 4062.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.38;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4062,465,0 chrXIV 747725 . G A 3826.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.35;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3826,423,0 chrXIV 747791 . T C 4596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.0944;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.979;QD=21.99;ReadPosRankSum=1.715;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:4596,516,0 chrXIV 747936 . A G 3597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=2.709;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=1.548;QD=21.28;ReadPosRankSum=2.406;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3597,414,0 chrXIV 748117 . C T 2480 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=9.0542;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=17.84;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2513,270,0 chrXIV 748118 . T C 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.563;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.5236;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.637;QD=16.80;ReadPosRankSum=2.697;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:3,133:138:99:2351,270,0 chrXIV 748253 . G A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.87;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3318,360,0 chrXIV 748598 . T C 4316.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.3973;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.48;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4316,489,0 chrXIV 748773 . T C 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=3.446;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-1.070;QD=21.58;ReadPosRankSum=1.644;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3432,387,0 chrXIV 748858 . T C 3869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=167;Dels=0.00;FS=10.467;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.614;QD=23.17;ReadPosRankSum=2.920;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:3,161:167:99:3869,438,0 chrXIV 748885 . T G 3676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=160;Dels=0.00;FS=3.094;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.225;QD=22.98;ReadPosRankSum=1.644;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:1,156:160:99:3676,411,0 chrXIV 748937 . A G 2936 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.91;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2969,333,0 chrXIV 749042 . A G 2870 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.95;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2903,336,0 chrXIV 749048 . A G 2883 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.88;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2916,330,0 chrXIV 749073 . T C 2678 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.69;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2711,318,0 chrXIV 749402 . T C 3459.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=19.22;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3459,384,0 chrXIV 749410 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.3586;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=18.40;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3404,369,0 chrXIV 749415 . C T 3367.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.6678;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=0;QD=17.63;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3367,369,0 chrXIV 749467 . G T 2818 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.9348;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=16.29;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2851,309,0 chrXIV 749472 . T C 2410 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9348;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=14.70;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2443,288,0 chrXIV 749513 . C G 2310 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=18.48;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2343,264,0 chrXIV 749541 . T C 2061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=115;Dels=0.00;FS=7.940;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.076;QD=17.92;ReadPosRankSum=2.407;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2094,249,0 chrXIV 749652 . G A 3884.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=22.32;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3884,435,0 chrXIV 749727 . A C 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=143;Dels=0.00;FS=3.722;HaplotypeScore=5.7559;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.312;QD=20.34;ReadPosRankSum=1.682;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,138:143:99:2941,330,0 chrXIV 749744 . A G 3140 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.66;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3173,354,0 chrXIV 750028 . C T 5046.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.69;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5046,546,0 chrXIV 750232 . T G 4086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=188;Dels=0.00;FS=10.531;HaplotypeScore=10.2774;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.332;QD=21.73;ReadPosRankSum=2.940;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:3,182:188:99:4086,456,0 chrXIV 750252 . G T 4673.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.8350;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.37;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4673,510,0 chrXIV 750409 . G A 4966.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=5.8402;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=24.34;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4966,531,0 chrXIV 750427 . T C 4390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=200;Dels=0.00;FS=2.892;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=1.897;QD=21.95;ReadPosRankSum=2.413;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4390,510,0 chrXIV 750473 . T C 2806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=5.046;HaplotypeScore=5.9386;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=0.884;QD=18.83;ReadPosRankSum=1.709;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:2839,321,0 chrXIV 750684 . T C 1768 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.60;MQ0=0;QD=21.05;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1801,201,0 chrXIV 750686 . G A 1677 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.15;MQ0=0;QD=20.70;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1710,192,0 chrXIV 750691 . T C 1601 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=20.53;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1634,183,0 chrXIV 750702 . C T 1301 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=18.32;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1334,153,0 chrXIV 750706 . A T 1289 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;MQRankSum=0.693;QD=17.66;ReadPosRankSum=2.382;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1322,144,0 chrXIV 750714 . C T 1227 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=17.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1260,138,0 chrXIV 750716 . T C 1098 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=15.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1131,129,0 chrXIV 750721 . T C 1080 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1113,126,0 chrXIV 750722 . G A 1111 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1144,126,0 chrXIV 750732 . A G 1043 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.577;QD=12.88;ReadPosRankSum=1.689;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1076,120,0 chrXIV 750743 . C A 1128 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1161,126,0 chrXIV 750744 . C T 1123 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1156,126,0 chrXIV 750761 . C T 1048 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1081,117,0 chrXIV 750775 . A G 812 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.567;DP=85;Dels=0.00;FS=13.274;HaplotypeScore=1.9248;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;MQRankSum=0.259;QD=9.55;ReadPosRankSum=3.123;SB=-6.547e-03 GT:AD:DP:GQ:PL 1/1:4,81:85:55:845,55,0 chrXIV 750776 . T C 831 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.760;DP=84;Dels=0.00;FS=14.472;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;MQRankSum=1.591;QD=9.89;ReadPosRankSum=2.531;SB=-6.547e-03 GT:AD:DP:GQ:PL 1/1:3,81:84:55:864,55,0 chrXIV 750779 . T A 961 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=100;Dels=0.00;FS=39.948;HaplotypeScore=1.9248;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;MQRankSum=-0.275;QD=9.61;ReadPosRankSum=2.959;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,95:100:99:994,111,0 chrXIV 750800 . T C 773.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;DP=95;Dels=0.03;FS=83.862;HaplotypeScore=5.9306;MLEAC=1;MLEAF=0.500;MQ=28.68;MQ0=0;MQRankSum=1.748;QD=8.14;ReadPosRankSum=0.789;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:9,83:92:54:803,0,54 chrXIV 750821 . T C 768.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.039;DP=102;Dels=0.00;FS=211.366;HaplotypeScore=19.5127;MLEAC=1;MLEAF=0.500;MQ=28.25;MQ0=3;MQRankSum=0.866;QD=7.53;ReadPosRankSum=2.443;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:31,71:102:99:798,0,406 chrXIV 750826 . C T 241.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.883;DP=104;Dels=0.00;FS=109.985;HaplotypeScore=19.5828;MLEAC=1;MLEAF=0.500;MQ=28.48;MQ0=4;MQRankSum=1.469;QD=2.32;ReadPosRankSum=-2.908;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,24:104:99:271,0,890 chrXIV 750833 . A G 593.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;DP=97;Dels=0.00;FS=202.649;HaplotypeScore=12.3397;MLEAC=1;MLEAF=0.500;MQ=28.13;MQ0=6;MQRankSum=0.186;QD=6.11;ReadPosRankSum=2.051;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:39,58:97:99:623,0,623 chrXIV 750840 . G A 613.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.476;DP=100;Dels=0.00;FS=217.516;HaplotypeScore=3.1780;MLEAC=1;MLEAF=0.500;MQ=27.76;MQ0=7;MQRankSum=0.806;QD=6.13;ReadPosRankSum=-0.847;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:41,59:100:99:643,0,594 chrXIV 750848 . G A 568.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;DP=98;Dels=0.00;FS=222.537;HaplotypeScore=4.5538;MLEAC=1;MLEAF=0.500;MQ=27.77;MQ0=7;MQRankSum=1.043;QD=5.80;ReadPosRankSum=-2.455;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:43,55:98:99:598,0,661 chrXIV 750850 . A G 538.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.048;DP=98;Dels=0.00;FS=211.626;HaplotypeScore=4.5538;MLEAC=1;MLEAF=0.500;MQ=27.77;MQ0=7;MQRankSum=0.990;QD=5.49;ReadPosRankSum=-2.541;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:44,54:98:99:568,0,690 chrXIV 750867 . G A 403.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.907;DP=84;Dels=0.00;FS=221.338;HaplotypeScore=2.1557;MLEAC=1;MLEAF=0.500;MQ=27.54;MQ0=7;MQRankSum=-0.260;QD=4.80;ReadPosRankSum=-2.695;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:46,38:84:99:433,0,746 chrXIV 750875 . A C 278.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.368;DP=76;Dels=0.00;FS=189.987;HaplotypeScore=2.1557;MLEAC=1;MLEAF=0.500;MQ=27.38;MQ0=7;MQRankSum=0.492;QD=3.66;ReadPosRankSum=-1.003;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:48,28:76:99:308,0,779 chrXIV 750888 . G A 122.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.204;DP=82;Dels=0.00;FS=179.048;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=27.60;MQ0=7;MQRankSum=-0.018;QD=1.49;ReadPosRankSum=1.611;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:62,20:82:99:152,0,805 chrXIV 750902 . A G 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DP=77;Dels=0.00;FS=130.269;HaplotypeScore=1.9411;MLEAC=1;MLEAF=0.500;MQ=28.22;MQ0=7;MQRankSum=-0.709;QD=0.20;ReadPosRankSum=1.005;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:65,12:77:45:45,0,668 chrXIV 750904 . A G 600.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;DP=76;Dels=0.00;FS=127.779;HaplotypeScore=4.2524;MLEAC=1;MLEAF=0.500;MQ=28.52;MQ0=7;MQRankSum=0.744;QD=7.89;ReadPosRankSum=-0.335;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:12,62:76:57:630,0,57 chrXIV 750905 . A G 850 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.0411;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=7;QD=11.18;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:883,99,0 chrXIV 750974 . C T 714.52 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.66;MQ0=3;MQRankSum=0.455;QD=8.71;ReadPosRankSum=-0.285;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:12,70:82:6:744,0,6 chrXIV 751004 . T C 596 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.04;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:72:629,72,0 chrXIV 751013 . A G 410 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=2;QD=8.54;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:51:443,51,0 chrXIV 751264 . C T 347.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;DP=24;Dels=0.00;FS=44.205;HaplotypeScore=7.8955;MLEAC=1;MLEAF=0.500;MQ=34.12;MQ0=2;MQRankSum=3.291;QD=14.46;ReadPosRankSum=-0.157;SB=-3.028e+00 GT:AD:DP:GQ:PL 0/1:7,17:24:23:377,0,23 chrXIV 751286 . G A 483 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.66;MQ0=3;QD=20.12;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:54:516,54,0 chrXIV 751313 . C G 707 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=7;QD=15.71;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:84:740,84,0 chrXIV 751360 . T C 1044 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.389;DP=98;Dels=0.00;FS=48.538;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=24.73;MQ0=27;MQRankSum=4.044;QD=10.65;ReadPosRankSum=2.328;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:33,65:98:39:1077,39,0 chrXIV 751373 . G A 1044 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.326;DP=98;Dels=0.00;FS=6.347;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=28;MQRankSum=0.979;QD=10.65;ReadPosRankSum=-0.778;SB=-1.801e+01 GT:AD:DP:GQ:PL 1/1:24,73:98:99:1077,99,0 chrXIV 751385 . A C 193.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;DP=109;Dels=0.00;FS=73.278;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=23.51;MQ0=31;MQRankSum=-2.562;QD=1.77;ReadPosRankSum=-2.078;SB=-1.300e+02 GT:AD:DP:GQ:PL 0/1:72,35:109:99:223,0,712 chrXIV 751413 . A G 819.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.041;DP=117;Dels=0.00;FS=65.233;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=24.94;MQ0=24;MQRankSum=-0.867;QD=7.00;ReadPosRankSum=2.921;SB=-4.320e+02 GT:AD:DP:GQ:PL 0/1:43,72:117:99:849,0,264 chrXIV 751529 . A G 609.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.314;DP=118;Dels=0.00;FS=72.666;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.23;MQ0=42;MQRankSum=-2.011;QD=5.17;ReadPosRankSum=-2.326;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:28,90:118:12:642,12,0 chrXIV 751540 . C T 424.46 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.367;DP=121;Dels=0.00;FS=71.459;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.02;MQ0=49;MQRankSum=-2.392;QD=3.51;ReadPosRankSum=-0.997;SB=-4.469e+00 GT:AD:DP:GQ:PL 0/1:35,86:121:1:453,0,1 chrXIV 751553 . C T 325.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;DP=132;Dels=0.00;FS=86.381;HaplotypeScore=7.5554;MLEAC=1;MLEAF=0.500;MQ=18.15;MQ0=51;MQRankSum=-2.143;QD=2.46;ReadPosRankSum=1.370;SB=-4.017e+00 GT:AD:DP:GQ:PL 0/1:41,91:132:62:355,0,62 chrXIV 751721 . G A 2377 filter AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=24;QD=15.24;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2410,282,0 chrXIV 751807 . G A 3927.01 filter AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.4567;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=4;QD=21.82;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3927,426,0 chrXIV 751913 . T G 2253 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=153;Dels=0.00;FS=9.085;HaplotypeScore=8.1225;MLEAC=2;MLEAF=1.00;MQ=32.75;MQ0=11;MQRankSum=-3.333;QD=14.73;ReadPosRankSum=3.371;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:4,147:153:99:2286,267,0 chrXIV 751925 . C G 1892 filter AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=11;QD=14.33;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:1925,228,0 chrXIV 751944 . G A 2198 filter AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=9;QD=15.93;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2231,237,0 chrXIV 752030 . A G 4241.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.937;DP=212;Dels=0.00;FS=10.622;HaplotypeScore=14.7411;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=5;MQRankSum=1.997;QD=20.00;ReadPosRankSum=1.744;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:11,198:212:99:4241,412,0 chrXIV 752069 . A G 4228.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.0517;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=1;QD=21.03;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4228,495,0 chrXIV 752169 . C T 3458.01 SnpCluster AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=22.03;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3458,372,0 chrXIV 752173 . A G 3036 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=6.344;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=1.001;QD=20.11;ReadPosRankSum=2.417;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3069,348,0 chrXIV 752175 . G A 3148 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=20.85;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3181,351,0 chrXIV 752223 . C G 3436.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.694;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.4654;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=1.694;QD=18.78;ReadPosRankSum=-0.152;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:1,181:183:99:3436,399,0 chrXIV 752316 . C T 3477.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.03;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3477,372,0 chrXIV 752591 . A G 4222.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.1017;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=22.70;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4222,480,0 chrXIV 752756 . T C 2508 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.516;DP=174;Dels=0.00;FS=82.179;HaplotypeScore=23.6492;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=5;MQRankSum=4.819;QD=14.41;ReadPosRankSum=0.305;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:25,146:174:89:2541,89,0 chrXIV 752863 . C T 264.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;DP=143;Dels=0.00;FS=20.980;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=53.03;MQ0=0;MQRankSum=-9.030;QD=1.85;ReadPosRankSum=-1.571;SB=-1.220e+02 GT:AD:DP:GQ:PL 0/1:105,38:143:99:294,0,2062 chrXIV 752936 . A T 2890 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.66;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2923,330,0 chrXIV 752968 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.01;FS=0.000;HaplotypeScore=13.0026;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=19.76;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3754,429,0 chrXIV 753001 . A G 146.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.805;DP=190;Dels=0.00;FS=44.811;HaplotypeScore=11.0303;MLEAC=1;MLEAF=0.500;MQ=50.21;MQ0=0;MQRankSum=-9.077;QD=0.77;ReadPosRankSum=-1.382;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:149,41:190:99:176,0,2971 chrXIV 753269 . C T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.8121;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=20.96;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3311,366,0 chrXIV 753290 . G A 2949 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;QD=19.93;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2982,333,0 chrXIV 753318 . T G 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=133;Dels=0.00;FS=6.527;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.42;MQ0=0;MQRankSum=1.137;QD=16.14;ReadPosRankSum=2.413;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2179,252,0 chrXIV 753325 . C T 1974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=131;Dels=0.00;FS=6.028;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.29;MQ0=0;MQRankSum=-2.485;QD=15.07;ReadPosRankSum=2.423;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2007,222,0 chrXIV 753336 . G A 1819 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.49;MQ0=0;QD=15.03;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1852,201,0 chrXIV 753372 . G C 1380 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=13.94;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1413,159,0 chrXIV 753373 . T A 1468 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=14.83;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1501,162,0 chrXIV 753377 . T G 1388 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=14.02;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1421,162,0 chrXIV 753378 . T C 1428 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=0;MQRankSum=-1.732;QD=14.28;ReadPosRankSum=1.697;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1461,162,0 chrXIV 753380 . A G 1440 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.16;MQ0=0;QD=14.12;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1473,165,0 chrXIV 753430 . A G 1971 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;MQRankSum=-0.125;QD=15.77;ReadPosRankSum=1.704;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2004,228,0 chrXIV 753431 . G A 2020 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=16.29;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2053,228,0 chrXIV 753436 . G C 1858 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=14.29;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:1891,219,0 chrXIV 753470 . A T 2727 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=20.66;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2760,303,0 chrXIV 753530 . C A 2415 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=18.72;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2448,276,0 chrXIV 753532 . C T 2467 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;QD=19.58;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2500,276,0 chrXIV 753567 . A T 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=136;Dels=0.00;FS=3.418;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;MQRankSum=-0.078;QD=18.82;ReadPosRankSum=1.706;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2593,285,0 chrXIV 753659 . A T 2599 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.4110;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.84;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2632,285,0 chrXIV 753727 . A C 2784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=137;Dels=0.00;FS=2.975;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=1.947;QD=20.32;ReadPosRankSum=2.324;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2817,327,0 chrXIV 754067 . G T 2180 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.24;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2213,243,0 chrXIV 754144 . G C 3298.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.23;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3298,375,0 chrXIV 754288 . A G 3102 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.41;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3135,354,0 chrXIV 754294 . T C 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.281;DP=158;Dels=0.00;FS=5.268;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.719;QD=21.35;ReadPosRankSum=3.403;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:4,153:158:99:3373,381,0 chrXIV 754488 . A G 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-1.014;QD=22.12;ReadPosRankSum=1.648;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3628,408,0 chrXIV 754560 . G A 4356.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.9669;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.45;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4356,474,0 chrXIV 754593 . T G 3650.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=165;Dels=0.00;FS=3.993;HaplotypeScore=8.9282;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.181;QD=22.12;ReadPosRankSum=1.711;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3650,411,0 chrXIV 754667 . C T 2633 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.94;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2666,303,0 chrXIV 754752 . T A 2031 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=17.66;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2064,225,0 chrXIV 754753 . G A 2061 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=18.24;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2094,231,0 chrXIV 754756 . T C 2120 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=18.28;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2153,237,0 chrXIV 754761 . A G 1998 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=1.417;QD=16.51;ReadPosRankSum=1.703;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2031,228,0 chrXIV 754857 . G A 2553 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=20.10;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2586,279,0 chrXIV 754862 . T C 2399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=124;Dels=0.00;FS=3.039;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;MQRankSum=-0.970;QD=19.35;ReadPosRankSum=2.390;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2432,279,0 chrXIV 754875 . T C 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;MQRankSum=-0.937;QD=17.11;ReadPosRankSum=1.675;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2121,237,0 chrXIV 754876 . G T 2103 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=17.24;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2136,237,0 chrXIV 754942 . G A 2292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=118;Dels=0.00;FS=13.885;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=4.238;QD=19.42;ReadPosRankSum=3.566;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:7,111:118:99:2325,255,0 chrXIV 755218 . T C 1832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=107;Dels=0.00;FS=5.481;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=3;MQRankSum=0.563;QD=17.12;ReadPosRankSum=2.894;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:3,104:107:99:1865,213,0 chrXIV 755323 . A C 2434 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=21.73;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2467,276,0 chrXIV 755359 . G A 1187 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=2;QD=12.24;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1220,138,0 chrXIV 755402 . T C 935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=119;Dels=0.00;FS=3.321;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=29.38;MQ0=3;MQRankSum=-0.119;QD=7.86;ReadPosRankSum=1.702;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:968,114,0 chrXIV 755412 . G C 859 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=86.5727;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=3;QD=7.28;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:892,102,0 chrXIV 755437 . C T 1378 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=3;QD=9.84;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1411,150,0 chrXIV 755451 . T C 1510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.684;DP=142;Dels=0.00;FS=15.851;HaplotypeScore=1.9411;MLEAC=2;MLEAF=1.00;MQ=39.61;MQ0=1;MQRankSum=-1.433;QD=10.63;ReadPosRankSum=3.785;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:5,137:142:99:1543,174,0 chrXIV 755457 . A T 1860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.082;DP=147;Dels=0.00;FS=6.110;HaplotypeScore=8.5979;MLEAC=2;MLEAF=1.00;MQ=42.15;MQ0=0;MQRankSum=2.366;QD=12.65;ReadPosRankSum=1.931;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:1893,210,0 chrXIV 755545 . T C 1597 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.720;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3821;MLEAC=2;MLEAF=1.00;MQ=42.96;MQ0=0;MQRankSum=2.408;QD=13.53;ReadPosRankSum=2.408;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:1630,186,0 chrXIV 755548 . T C 1427 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=13.99;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1460,171,0 chrXIV 755549 . A G 1424 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=5.936;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;MQRankSum=-1.562;QD=13.96;ReadPosRankSum=1.630;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1457,171,0 chrXIV 755567 . C A 1345 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.59;MQ0=0;QD=12.01;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1378,150,0 chrXIV 755572 . T G 1248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.74;MQ0=0;MQRankSum=-1.889;QD=10.95;ReadPosRankSum=2.385;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:1281,147,0 chrXIV 755640 . G A 2516 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=17.59;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2549,291,0 chrXIV 755706 . G A 3888.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=154;Dels=0.00;FS=6.165;HaplotypeScore=21.2625;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=2.417;QD=25.25;ReadPosRankSum=0.865;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3888,423,0 chrXIV 755761 . G T 4438.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=19.1755;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=24.12;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4438,486,0 chrXIV 755812 . C T 3700.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=23.27;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3700,411,0 chrXIV 755864 . A T 2971 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=14.0070;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.39;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3004,327,0 chrXIV 756613 . C G 4355.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.88;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4355,489,0 chrXIV 756837 . T C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.0708;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.174;QD=20.98;ReadPosRankSum=1.686;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3180,360,0 chrXIV 756903 . G A 4184.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=23.77;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4184,456,0 chrXIV 756985 . G A 3924.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.36;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3924,423,0 chrXIV 757123 . C T 3102 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.7075;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.54;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3135,342,0 chrXIV 757138 . G A 3089 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.32;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3122,339,0 chrXIV 757207 . G A 2751 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=17.41;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2784,312,0 chrXIV 757219 . A G 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=152;Dels=0.00;FS=3.038;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=-1.625;QD=16.12;ReadPosRankSum=2.385;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2483,285,0 chrXIV 757236 . T C 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=0.540;QD=15.64;ReadPosRankSum=1.665;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:2442,279,0 chrXIV 757288 . G A 3004 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.03;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3037,336,0 chrXIV 757477 . T A 4864.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=17.2805;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.20;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4864,520,0 chrXIV 757822 . A G 5475.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=260;Dels=0.00;FS=3.736;HaplotypeScore=16.5618;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.079;QD=21.06;ReadPosRankSum=1.705;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:1,259:260:99:5475,641,0 chrXIV 757885 . A T 5843.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=262;Dels=0.00;FS=3.324;HaplotypeScore=10.5378;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=0.752;QD=22.30;ReadPosRankSum=1.692;SB=-3.131e+03 GT:AD:DP:GQ:PL 1/1:1,261:262:99:5843,654,0 chrXIV 757912 . T C 4649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=225;Dels=0.00;FS=3.030;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=0.540;QD=20.66;ReadPosRankSum=2.384;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:4649,543,0 chrXIV 757924 . C T 5080.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=1.9532;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=21.71;SB=-2.834e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5080,558,0 chrXIV 757948 . G A 4904.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=20.10;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:4904,558,0 chrXIV 758102 . A G 5057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.155;DP=245;Dels=0.00;FS=18.667;HaplotypeScore=8.7567;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-1.097;QD=20.64;ReadPosRankSum=4.131;SB=-2.916e+03 GT:AD:DP:GQ:PL 1/1:6,237:245:99:5057,588,0 chrXIV 758123 . C T 5527.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=22.02;SB=-2.923e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5527,603,0 chrXIV 758159 . G A 4433.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=18.78;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:4433,513,0 chrXIV 758169 . G A 4499.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=5.1436;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=19.39;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:4499,492,0 chrXIV 758211 . T C 4598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=216;Dels=0.00;FS=3.019;HaplotypeScore=13.3940;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=0.588;QD=21.29;ReadPosRankSum=2.404;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4598,522,0 chrXIV 758263 . A G 4812.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.59;SB=-2.692e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4812,543,0 chrXIV 758397 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.55;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3440,393,0 chrXIV 758408 . A T 3645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.708;DP=180;Dels=0.00;FS=8.011;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.505;QD=20.25;ReadPosRankSum=3.630;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:5,175:180:99:3645,393,0 chrXIV 758547 . A G 3626.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3626,402,0 chrXIV 758691 . G C 3509.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.7987;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.53;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3509,396,0 chrXIV 758804 . A G 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=9.8358;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.343;QD=20.50;ReadPosRankSum=1.697;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4038,468,0 chrXIV 759022 . T A 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=152;Dels=0.00;FS=3.825;HaplotypeScore=10.0673;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=1.481;QD=21.02;ReadPosRankSum=1.709;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3228,357,0 chrXIV 759078 . G T 2293 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.04;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2326,261,0 chrXIV 759107 . G T 1763 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=7.1118;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=18.76;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1796,195,0 chrXIV 759188 . A G 2502 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.03;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2535,291,0 chrXIV 759584 . A T 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=3.670;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=-1.686;QD=21.97;ReadPosRankSum=1.709;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3317,375,0 chrXIV 759591 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.86;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2933,321,0 chrXIV 759712 . G C 2841 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.6601;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.55;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2874,327,0 chrXIV 759743 . A G 3309.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6134;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.14;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3309,366,0 chrXIV 759922 . G T 2182 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=22.04;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2215,243,0 chrXIV 759935 . C T 2423 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3048;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.63;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2456,267,0 chrXIV 759988 . T C 2665 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=22.21;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2698,315,0 chrXIV 760061 . C A 2266 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.63;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2299,255,0 chrXIV 760229 . C T 1782 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=19.37;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1815,204,0 chrXIV 760237 . G A 1808 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.7803;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.44;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1841,204,0 chrXIV 760326 . G A 2676 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.68;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2709,294,0 chrXIV 760406 . C T 2461 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.58;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2494,267,0 chrXIV 761002 . G T 2595 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.81;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2628,297,0 chrXIV 761005 . C T 2482 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.34;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2515,279,0 chrXIV 761123 . C G 3050 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7458;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.11;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3083,342,0 chrXIV 761147 . G A 3142 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.44;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3175,354,0 chrXIV 761193 . A G 3047 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7078;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=20.59;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3080,348,0 chrXIV 761636 . A G 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.693;QD=23.43;ReadPosRankSum=1.652;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3079,345,0 chrXIV 761851 . C T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.68;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3311,360,0 chrXIV 761972 . G A 2506 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.42;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2539,279,0 chrXIV 762120 . C T 3087 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.12;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3120,336,0 chrXIV 762153 . T A 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=139;Dels=0.00;FS=2.968;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.561;QD=22.82;ReadPosRankSum=2.343;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3205,357,0 chrXIV 762280 . G C 3423.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.80;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3423,393,0 chrXIV 762368 . T C 3103 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.9164;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.25;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3136,351,0 chrXIV 762433 . A C 2675 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.84;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2708,312,0 chrXIV 762511 . T C 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.1863;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.803;QD=21.58;ReadPosRankSum=2.006;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2903,321,0 chrXIV 762827 . G A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.0956;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.97;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3405,387,0 chrXIV 762860 . T G 3582.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=154;Dels=0.00;FS=3.214;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.283;QD=23.26;ReadPosRankSum=1.687;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:1,152:154:99:3582,399,0 chrXIV 762967 . T C 3168 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3201,363,0 chrXIV 763243 . G A 2794 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.8982;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;QD=21.66;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2827,312,0 chrXIV 763381 . A C 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=149;Dels=0.00;FS=7.517;HaplotypeScore=10.1208;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.553;QD=22.16;ReadPosRankSum=2.400;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3302,381,0 chrXIV 763402 . C G 3301.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.01;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3301,369,0 chrXIV 763497 . T A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.47;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3348,363,0 chrXIV 763540 . C G 2937 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2970,336,0 chrXIV 763583 . C T 3828.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=13.0183;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.48;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3828,411,0 chrXIV 763742 . T C 2998 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.71;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3031,339,0 chrXIV 763906 . C T 2637 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0307;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.97;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2670,294,0 chrXIV 763922 . C T 2672 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=21.38;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2705,303,0 chrXIV 764011 . C T 2876 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.5417;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.83;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2909,318,0 chrXIV 764145 . A T 3024 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.62;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3057,339,0 chrXIV 764357 . G A 2169 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.13;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2202,249,0 chrXIV 764395 . T C 1673 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.45;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1706,198,0 chrXIV 764481 . G A 2675 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.10;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2708,291,0 chrXIV 764538 . T G 1959 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.26;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1992,225,0 chrXIV 764587 . T C 1762 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.23;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1795,207,0 chrXIV 764608 . C T 1634 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.68;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1667,186,0 chrXIV 764643 . G A 1862 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.8218;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.65;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1895,204,0 chrXIV 764688 . A G 1614 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.11;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1647,183,0 chrXIV 764938 . T C 2790 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.05;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2823,318,0 chrXIV 764974 . A G 2672 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.44;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2705,315,0 chrXIV 765005 . A C 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=3.522;HaplotypeScore=9.7056;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.245;QD=20.98;ReadPosRankSum=1.706;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2886,324,0 chrXIV 765218 . A T 4006.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.56;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4006,441,0 chrXIV 765330 . T G 4150.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=195;Dels=0.00;FS=5.999;HaplotypeScore=12.7078;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.705;QD=21.28;ReadPosRankSum=2.964;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:3,191:195:99:4150,465,0 chrXIV 765537 . T C 5065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=215;Dels=0.00;FS=5.918;HaplotypeScore=16.7640;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.099;QD=23.56;ReadPosRankSum=2.855;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:3,211:215:99:5065,579,0 chrXIV 766008 . T G 2878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=137;Dels=0.00;FS=6.862;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.045;QD=21.01;ReadPosRankSum=2.377;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2911,336,0 chrXIV 766253 . T C 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=164;Dels=0.00;FS=2.852;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=0.472;QD=22.62;ReadPosRankSum=2.420;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3709,417,0 chrXIV 766266 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.80;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3511,390,0 chrXIV 766366 . G A 3215 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3248,354,0 chrXIV 766895 . A T 3712.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=4.380;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.882;QD=22.91;ReadPosRankSum=1.689;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3712,408,0 chrXIV 767389 . C T 4453.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=9.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4453,489,0 chrXIV 768575 . C T 5599.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.43;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5599,630,0 chrXIV 768623 . T C 4688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.654;DP=214;Dels=0.00;FS=17.662;HaplotypeScore=13.3833;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-1.345;QD=21.91;ReadPosRankSum=2.748;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:5,209:214:99:4688,528,0 chrXIV 768845 . A C 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.3877;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-1.425;QD=20.69;ReadPosRankSum=1.710;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3311,378,0 chrXIV 768862 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.74;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3754,420,0 chrXIV 768903 . A G 3839.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.69;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3839,426,0 chrXIV 769375 . A G 2855 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.54;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2888,327,0 chrXIV 769392 . A G 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.685;QD=18.29;ReadPosRankSum=1.657;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2576,300,0 chrXIV 769532 . G A 3512.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=25.82;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3512,378,0 chrXIV 770068 . A G 1980 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.29;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2013,219,0 chrXIV 770112 . T A 2094 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.80;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2127,243,0 chrXIV 770149 . A G 1659 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.27;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1692,192,0 chrXIV 770174 . A G 1428 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=20.11;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1461,165,0 chrXIV 770189 . T C 1455 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=19.40;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1488,171,0 chrXIV 770292 . T C 2094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.601;QD=21.37;ReadPosRankSum=1.697;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2127,243,0 chrXIV 770313 . A G 2083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=100;Dels=0.01;FS=14.429;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.382;QD=20.83;ReadPosRankSum=3.279;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:4,95:99:99:2116,234,0 chrXIV 770350 . T C 2395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.696;QD=22.38;ReadPosRankSum=1.635;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2428,270,0 chrXIV 770491 . C T 3996.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=15.4160;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.93;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3996,450,0 chrXIV 770724 . T C 5727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.908;DP=258;Dels=0.00;FS=14.560;HaplotypeScore=17.4782;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.750;QD=22.20;ReadPosRankSum=4.065;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:6,250:258:99:5727,651,0 chrXIV 770920 . T C 5819.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.63;SB=-3.319e+03 GT:AD:DP:GQ:PL 1/1:0,267:269:99:5819,642,0 chrXIV 770932 . A G 5570.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=20.48;SB=-3.260e+03 GT:AD:DP:GQ:PL 1/1:0,271:272:99:5570,633,0 chrXIV 771017 . G A 5638.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.68;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5638,633,0 chrXIV 771471 . C T 5439.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.01;FS=0.000;HaplotypeScore=23.5057;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.22;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,263:265:99:5439,597,0 chrXIV 771701 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.7556;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.49;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3654,411,0 chrXIV 771905 . G A 2720 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2753,303,0 chrXIV 772118 . T G 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=148;Dels=0.00;FS=2.679;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.781;QD=22.25;ReadPosRankSum=2.399;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3293,387,0 chrXIV 772160 . A G 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.6184;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.247;QD=20.92;ReadPosRankSum=1.680;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2816,315,0 chrXIV 772254 . G C 2471 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=22.67;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2504,273,0 chrXIV 772272 . A G 2759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-1.394;QD=22.43;ReadPosRankSum=1.704;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2792,306,0 chrXIV 772448 . G C 1915 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=22.53;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1948,222,0 chrXIV 772480 . G A 1569 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=22.74;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1602,180,0 chrXIV 772489 . C T 1328 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;QD=22.51;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1361,150,0 chrXIV 772495 . C T 1145 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=0;QD=17.62;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1178,144,0 chrXIV 772540 . G A 1381 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=18.41;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1414,156,0 chrXIV 772541 . C A 1424 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=19.51;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1457,156,0 chrXIV 772544 . T G 1295 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=12.613;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;MQRankSum=-0.119;QD=17.74;ReadPosRankSum=1.685;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1328,153,0 chrXIV 772697 . G C 936 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.51;MQ0=0;QD=16.14;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:969,114,0 chrXIV 772703 . A G 882 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.44;MQ0=0;QD=15.47;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:915,108,0 chrXIV 772716 . C T 766 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.04;MQ0=0;QD=13.68;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:93:799,93,0 chrXIV 772728 . C T 641 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.39;MQ0=4;QD=13.93;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:78:674,78,0 chrXIV 772737 . A G 325 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.09;MQ0=9;QD=9.85;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:45:358,45,0 chrXIV 772753 . T C 139.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.29;MQ0=11;MQRankSum=-0.248;QD=4.35;ReadPosRankSum=1.569;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:5,27:32:21:172,21,0 chrXIV 772770 . C T 226 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.03;MQ0=12;QD=6.46;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:30:259,30,0 chrXIV 772834 . T C 72.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=81;Dels=0.00;FS=12.818;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.54;MQ0=39;MQRankSum=-2.156;QD=0.90;ReadPosRankSum=2.333;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:3,77:81:12:105,12,0 chrXIV 772854 . C T 1227 filter AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=18.94;MQ0=41;QD=9.30;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1260,141,0 chrXIV 773025 . T C 578.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DP=277;Dels=0.00;FS=17.537;HaplotypeScore=16.1033;MLEAC=1;MLEAF=0.500;MQ=37.84;MQ0=30;MQRankSum=-2.659;QD=2.09;ReadPosRankSum=0.222;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:231,44:277:99:608,0,2962 chrXIV 773034 . T C 2805.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.997;DP=257;Dels=0.00;FS=19.982;HaplotypeScore=9.0599;MLEAC=1;MLEAF=0.500;MQ=37.66;MQ0=32;MQRankSum=3.154;QD=10.91;ReadPosRankSum=3.527;SB=-5.010e+02 GT:AD:DP:GQ:PL 0/1:44,212:257:99:2835,0,561 chrXIV 773059 . A G 3158.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;DP=285;Dels=0.00;FS=0.709;HaplotypeScore=10.0567;MLEAC=1;MLEAF=0.500;MQ=38.46;MQ0=50;MQRankSum=5.604;QD=11.08;ReadPosRankSum=5.839;SB=-8.320e+02 GT:AD:DP:GQ:PL 0/1:63,222:285:99:3188,0,482 chrXIV 773076 . A G 787.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.655;DP=346;Dels=0.00;FS=12.824;HaplotypeScore=14.9191;MLEAC=1;MLEAF=0.500;MQ=38.55;MQ0=66;MQRankSum=-4.007;QD=2.27;ReadPosRankSum=-2.807;SB=-3.240e+02 GT:AD:DP:GQ:PL 0/1:240,102:346:99:817,0,3551 chrXIV 773172 . T C 1636.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.021;DP=410;Dels=0.00;FS=27.222;HaplotypeScore=34.5316;MLEAC=1;MLEAF=0.500;MQ=31.19;MQ0=34;MQRankSum=1.283;QD=3.99;ReadPosRankSum=-1.605;SB=-1.370e+02 GT:AD:DP:GQ:PL 0/1:189,218:410:99:1666,0,1486 chrXIV 773217 . A G 3087 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.280;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=11.8857;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=34;MQRankSum=-1.251;QD=11.61;ReadPosRankSum=2.251;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:4,262:266:99:3120,357,0 chrXIV 773226 . T C 3212.98 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=246;Dels=0.00;FS=8.219;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=34.13;MQ0=26;MQRankSum=-0.830;QD=13.06;ReadPosRankSum=1.716;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:1,244:246:99:3246,369,0 chrXIV 773244 . A T 4815.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.415;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=3.6433;MLEAC=2;MLEAF=1.00;MQ=39.96;MQ0=12;MQRankSum=-1.586;QD=17.51;ReadPosRankSum=3.415;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:5,270:275:99:4815,519,0 chrXIV 773265 . T G 4896.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=286;Dels=0.00;FS=19.549;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=40.32;MQ0=12;MQRankSum=-0.870;QD=17.12;ReadPosRankSum=2.974;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:3,279:286:99:4896,555,0 chrXIV 773307 . T C 1113.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.527;DP=286;Dels=0.00;FS=25.471;HaplotypeScore=10.1981;MLEAC=1;MLEAF=0.500;MQ=33.31;MQ0=37;MQRankSum=-1.496;QD=3.89;ReadPosRankSum=1.128;SB=-5.460e+02 GT:AD:DP:GQ:PL 0/1:156,127:286:99:1143,0,1348 chrXIV 773346 . C G 313 filter AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=7.7633;MLEAC=2;MLEAF=1.00;MQ=14.73;MQ0=63;QD=1.48;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:1,204:211:39:346,39,0 chrXIV 773349 . A C 314 filter AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=13.16;MQ0=63;QD=1.57;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:1,199:200:39:347,39,0 chrXIV 773424 . T G 744 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=95;Dels=0.00;FS=8.953;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.69;MQ0=40;MQRankSum=0.409;QD=7.83;ReadPosRankSum=1.669;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:90:777,90,0 chrXIV 773456 . C T 277.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.791;DP=102;Dels=0.00;FS=1.236;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=21.75;MQ0=39;MQRankSum=-1.238;QD=2.72;ReadPosRankSum=-0.021;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:54,48:102:99:307,0,622 chrXIV 773511 . G A 368.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;DP=98;Dels=0.00;FS=35.173;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=20.98;MQ0=41;MQRankSum=-1.748;QD=3.76;ReadPosRankSum=1.445;SB=-2.150e+02 GT:AD:DP:GQ:PL 0/1:46,52:98:99:398,0,356 chrXIV 773664 . T C 116.13 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.55;MQ0=23;QD=3.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:18:149,18,0 chrXIV 773805 . T G 434 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.398;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.51;MQ0=26;MQRankSum=-1.509;QD=7.61;ReadPosRankSum=1.509;SB=-1.191e-02 GT:AD:DP:GQ:PL 1/1:2,55:57:32:467,32,0 chrXIV 773901 . A G 94.26 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.14;MQ0=13;QD=3.93;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:15:127,15,0 chrXIV 774280 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=0;QD=11.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:54,6,0 chrXIV 774504 . T C 46.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.89;MQ0=4;MQRankSum=-1.495;QD=4.27;ReadPosRankSum=1.495;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:2,9:11:9:79,9,0 chrXIV 774589 . C A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=1;QD=4.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:6:55,6,0 chrXIV 774736 . A G 1572 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=17;QD=17.66;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,85:89:99:1605,183,0 chrXIV 774840 . A G 947 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.40;MQ0=28;QD=11.27;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,83:84:99:980,114,0 chrXIV 774888 . G A 924 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.05;MQ0=47;QD=9.83;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:957,108,0 chrXIV 774924 . G A 866 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.44;MQ0=39;QD=8.93;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:899,102,0 chrXIV 774977 . G C 1478 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=22;QD=11.73;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,123:126:99:1511,171,0 chrXIV 775031 . G A 2327 filter AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=24.80;MQ0=36;QD=14.54;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2360,261,0 chrXIV 775082 . C T 1798 filter AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=23.25;MQ0=70;QD=11.53;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,155:156:99:1831,201,0 chrXIV 775095 . T C 942 filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.35;MQ0=71;QD=8.26;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:975,111,0 chrXIV 775104 . A G 979 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.61;MQ0=66;QD=9.06;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1012,111,0 chrXIV 775176 . A T 131.13 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.93;MQ0=30;QD=3.36;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:2,37:39:18:164,18,0 chrXIV 775230 . A G 641 filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=13.59;MQ0=81;QD=4.68;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:78:674,78,0 chrXIV 775764 . C T 47.97 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.19;MQ0=8;QD=3.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:15:9:80,9,0 chrXIV 775905 . T C 233 filter AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.83;MQ0=128;QD=1.47;SB=-5.500e+01 GT:AD:DP:GQ:PL 1/1:0,154:158:30:266,30,0 chrXIV 775974 . A G 46.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;DP=57;Dels=0.00;FS=10.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=10.02;MQ0=50;MQRankSum=1.231;QD=0.82;ReadPosRankSum=1.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,53:57:9:79,9,0 chrXIV 776073 . T C 1088 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.61;MQ0=100;MQRankSum=-1.732;QD=6.84;ReadPosRankSum=1.674;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:1121,126,0 chrXIV 776172 . G T 1090 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=25.79;MQ0=8;QD=14.16;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1123,135,0 chrXIV 776214 . A G 1688 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=101;Dels=0.00;FS=2.592;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=6;MQRankSum=-0.245;QD=16.71;ReadPosRankSum=2.905;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:3,98:101:99:1721,195,0 chrXIV 776259 . G A 890.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;DP=160;Dels=0.00;FS=201.474;HaplotypeScore=12.7476;MLEAC=1;MLEAF=0.500;MQ=35.74;MQ0=0;MQRankSum=5.199;QD=5.56;ReadPosRankSum=-1.797;SB=-1.490e+02 GT:AD:DP:GQ:PL 0/1:95,64:160:99:920,0,1201 chrXIV 776395 . G A 1343 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=0;QD=14.29;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1376,153,0 chrXIV 776401 . G A 1420 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.26;MQ0=0;QD=13.79;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1453,156,0 chrXIV 776430 . C G 1898 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=14.71;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1931,222,0 chrXIV 776452 . A G 1667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.262;DP=141;Dels=0.00;FS=30.007;HaplotypeScore=6.0282;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;MQRankSum=3.318;QD=11.82;ReadPosRankSum=2.526;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:6,134:141:99:1700,195,0 chrXIV 776456 . A G 1702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.160;DP=135;Dels=0.00;FS=23.701;HaplotypeScore=6.0282;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;MQRankSum=2.916;QD=12.61;ReadPosRankSum=3.046;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:5,128:135:99:1735,198,0 chrXIV 776784 . C T 3097 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.61;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3130,339,0 chrXIV 776871 . A T 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=123;Dels=0.00;FS=2.766;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=-1.555;QD=17.13;ReadPosRankSum=2.409;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2140,243,0 chrXIV 776872 . G A 2142 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=17.56;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2175,243,0 chrXIV 776900 . G A 1818 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=14.31;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1851,198,0 chrXIV 776904 . T G 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.01;FS=3.547;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;MQRankSum=-1.490;QD=12.79;ReadPosRankSum=1.705;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:1696,192,0 chrXIV 777128 . C T 3224.03 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=23.88;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3257,357,0 chrXIV 777188 . A G 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=3.808;HaplotypeScore=7.0745;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.625;QD=21.99;ReadPosRankSum=1.668;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3584,417,0 chrXIV 777259 . T C 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.556;QD=21.62;ReadPosRankSum=1.700;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2411,273,0 chrXIV 777296 . A G 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=124;Dels=0.00;FS=3.017;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.268;QD=20.48;ReadPosRankSum=2.370;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2573,294,0 chrXIV 777337 . A G 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.831;QD=21.54;ReadPosRankSum=1.676;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2682,309,0 chrXIV 777389 . A G 2067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.246;QD=21.76;ReadPosRankSum=2.398;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2100,237,0 chrXIV 777435 . G A 1580 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1613,177,0 chrXIV 777773 . A G 1760 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.47;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1793,201,0 chrXIV 777816 . C G 2254 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2287,249,0 chrXIV 777944 . T C 2622 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.0222;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.17;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2655,294,0 chrXIV 777993 . A G 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.402;QD=23.79;ReadPosRankSum=1.639;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2698,303,0 chrXIV 778085 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2870,315,0 chrXIV 778223 . G A 2500 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.7028;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.93;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2533,288,0 chrXIV 778256 . C T 2593 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.08;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2626,300,0 chrXIV 778411 . C A 3150 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.05;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3183,345,0 chrXIV 778589 . G C 3010 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.93;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,146:151:99:3043,351,0 chrXIV 778731 . A G 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=162;Dels=0.00;FS=2.574;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-1.433;QD=20.46;ReadPosRankSum=2.343;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3314,369,0 chrXIV 778746 . G C 3127 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=20.17;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3160,354,0 chrXIV 778777 . C T 3105 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=20.98;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3138,342,0 chrXIV 778804 . G A 3108 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=20.18;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3141,339,0 chrXIV 778831 . A G 2728 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=42.54;MQ0=0;QD=18.56;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2761,315,0 chrXIV 778885 . T C 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;MQRankSum=-1.322;QD=17.55;ReadPosRankSum=1.681;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2402,267,0 chrXIV 778893 . C T 2468 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=18.28;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2501,267,0 chrXIV 779009 . T A 4424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=206;Dels=0.00;FS=2.578;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.82;MQ0=0;MQRankSum=0.840;QD=21.48;ReadPosRankSum=2.426;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4424,486,0 chrXIV 779010 . A C 4181.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=204;Dels=0.00;FS=4.708;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=39.91;MQ0=0;MQRankSum=-1.019;QD=20.50;ReadPosRankSum=1.681;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4181,486,0 chrXIV 779046 . C T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.40;MQ0=0;QD=19.82;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3509,396,0 chrXIV 779067 . G A 3287.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=18.89;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3287,375,0 chrXIV 779096 . C A 3694.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;QD=21.35;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3694,420,0 chrXIV 779134 . G A 3382.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.2280;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;QD=21.68;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3382,381,0 chrXIV 779143 . T C 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=3.489;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;MQRankSum=1.222;QD=19.29;ReadPosRankSum=1.711;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3196,366,0 chrXIV 779157 . A C 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.800;DP=180;Dels=0.00;FS=1.865;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.33;MQ0=0;MQRankSum=-0.694;QD=18.56;ReadPosRankSum=2.324;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:4,176:180:99:3340,380,0 chrXIV 779192 . T G 3025 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;QD=17.59;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3058,351,0 chrXIV 779202 . T A 2755 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.61;MQ0=0;MQRankSum=-1.169;QD=17.22;ReadPosRankSum=1.689;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2788,312,0 chrXIV 779203 . G A 2731 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.20;MQ0=0;QD=17.28;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2764,312,0 chrXIV 779204 . T C 2673 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=161;Dels=0.00;FS=11.749;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.82;MQ0=0;MQRankSum=-2.068;QD=16.60;ReadPosRankSum=2.389;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:2,159:161:99:2706,315,0 chrXIV 779247 . A G 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.267;DP=155;Dels=0.00;FS=2.394;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;MQRankSum=0.186;QD=16.57;ReadPosRankSum=3.402;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:4,151:155:99:2601,294,0 chrXIV 779265 . T C 2134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=4.898;HaplotypeScore=5.8114;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;MQRankSum=-1.283;QD=15.35;ReadPosRankSum=1.707;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2167,246,0 chrXIV 779288 . T A 2059 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;QD=15.14;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2092,237,0 chrXIV 779363 . T C 1808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=128;Dels=0.00;FS=6.111;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;MQRankSum=-2.032;QD=14.12;ReadPosRankSum=2.945;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:1841,213,0 chrXIV 779605 . A G 4005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=3.541;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=1.334;QD=23.02;ReadPosRankSum=1.712;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4005,444,0 chrXIV 779737 . T C 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=154;Dels=0.00;FS=8.087;HaplotypeScore=13.4869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.678;QD=20.78;ReadPosRankSum=2.242;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3233,360,0 chrXIV 779789 . C T 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.890;DP=162;Dels=0.00;FS=8.028;HaplotypeScore=16.3840;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.070;QD=20.52;ReadPosRankSum=0.163;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:2,157:162:99:3325,363,0 chrXIV 779825 . G T 3550.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.6562;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.83;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3550,381,0 chrXIV 779864 . G C 3501.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.34;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3501,393,0 chrXIV 780402 . G C 4377.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=23.66;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4377,495,0 chrXIV 780587 . C T 3745.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.1329;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=21.40;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3745,402,0 chrXIV 780598 . G T 3682.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=21.04;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3682,402,0 chrXIV 780630 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=16.69;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:3070,345,0 chrXIV 780633 . A C 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=176;Dels=0.00;FS=2.979;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=0.440;QD=17.26;ReadPosRankSum=2.422;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3071,339,0 chrXIV 780720 . G A 2998 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.88;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3031,336,0 chrXIV 780896 . G A 2916 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.5444;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=22.43;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2949,321,0 chrXIV 781018 . G C 1586 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.60;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1619,180,0 chrXIV 781101 . C G 1438 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=19.17;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1471,171,0 chrXIV 781147 . T C 954 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.89;MQ0=0;QD=17.35;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:987,114,0 chrXIV 781149 . G A 936 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.21;MQ0=0;QD=17.33;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:969,111,0 chrXIV 781212 . A G 95.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.733;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.898;QD=9.53;ReadPosRankSum=1.733;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:2,8:10:15:128,15,0 chrXIV 781216 . T C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.93;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:52,6,0 chrXIV 781274 . T A 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;DP=59;Dels=0.00;FS=131.238;HaplotypeScore=20.7461;MLEAC=1;MLEAF=0.500;MQ=25.24;MQ0=0;MQRankSum=-1.702;QD=0.46;ReadPosRankSum=0.757;SB=-3.008e+00 GT:AD:DP:GQ:PL 0/1:45,14:59:57:57,0,251 chrXIV 781298 . A T 507 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.67;MQ0=0;QD=8.31;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:60:540,60,0 chrXIV 781372 . G C 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.095;DP=67;Dels=0.00;FS=77.141;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=36.10;MQ0=1;MQRankSum=-2.934;QD=0.51;ReadPosRankSum=0.951;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:54,13:67:64:64,0,809 chrXIV 781374 . C T 1138 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=36.92;MQ0=1;QD=17.24;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1171,132,0 chrXIV 781391 . C T 913.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.753;DP=83;Dels=0.00;FS=113.409;HaplotypeScore=5.5642;MLEAC=1;MLEAF=0.500;MQ=39.36;MQ0=1;MQRankSum=4.662;QD=11.00;ReadPosRankSum=1.187;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:29,54:83:99:943,0,280 chrXIV 781400 . T C 312.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;DP=99;Dels=0.00;FS=152.857;HaplotypeScore=11.3394;MLEAC=1;MLEAF=0.500;MQ=37.96;MQ0=1;MQRankSum=-3.890;QD=3.15;ReadPosRankSum=0.465;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:65,34:99:99:342,0,1168 chrXIV 781404 . A C 410.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.477;DP=107;Dels=0.01;FS=146.355;HaplotypeScore=15.2828;MLEAC=1;MLEAF=0.500;MQ=38.08;MQ0=0;MQRankSum=-4.223;QD=3.83;ReadPosRankSum=-1.053;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:61,43:106:99:440,0,1250 chrXIV 781495 . A T 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.125;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.5105;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=0;MQRankSum=1.764;QD=0.22;ReadPosRankSum=-4.829;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,22:152:63:63,0,2502 chrXIV 781570 . T C 2136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.185;DP=140;Dels=0.00;FS=1.058;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=33.18;MQ0=1;MQRankSum=1.762;QD=15.26;ReadPosRankSum=-1.354;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:15,125:140:82:2169,82,0 chrXIV 781582 . T C 2262 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.83;MQ0=2;QD=17.81;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2295,281,0 chrXIV 781583 . C T 1665.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.936;DP=125;Dels=0.00;FS=3.693;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=33.84;MQ0=2;MQRankSum=1.289;QD=13.32;ReadPosRankSum=0.357;SB=-9.078e+02 GT:AD:DP:GQ:PL 0/1:17,108:125:29:1695,0,29 chrXIV 781584 . G A 1670.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;DP=123;Dels=0.00;FS=2.314;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=33.91;MQ0=2;MQRankSum=1.741;QD=13.58;ReadPosRankSum=0.463;SB=-9.586e+02 GT:AD:DP:GQ:PL 0/1:17,106:123:24:1700,0,24 chrXIV 781598 . T A 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DP=173;Dels=0.00;FS=18.376;HaplotypeScore=43.9520;MLEAC=1;MLEAF=0.500;MQ=31.74;MQ0=2;MQRankSum=-0.607;QD=0.25;ReadPosRankSum=1.056;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:148,25:173:73:73,0,2206 chrXIV 781606 . T C 435.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.411;DP=162;Dels=0.00;FS=14.899;HaplotypeScore=30.6539;MLEAC=1;MLEAF=0.500;MQ=32.12;MQ0=5;MQRankSum=-3.062;QD=2.69;ReadPosRankSum=0.014;SB=-1.240e+02 GT:AD:DP:GQ:PL 0/1:115,47:162:99:465,0,1572 chrXIV 781622 . C T 84.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.915;DP=158;Dels=0.00;FS=40.956;HaplotypeScore=27.3159;MLEAC=1;MLEAF=0.500;MQ=30.37;MQ0=12;MQRankSum=1.693;QD=0.53;ReadPosRankSum=2.280;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,19:158:99:114,0,1379 chrXIV 781629 . A G 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.135;DP=155;Dels=0.00;FS=116.666;HaplotypeScore=55.0246;MLEAC=1;MLEAF=0.500;MQ=29.82;MQ0=12;MQRankSum=-4.616;QD=0.51;ReadPosRankSum=3.505;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,35:155:99:109,0,1383 chrXIV 781664 . G A 1119.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.926;DP=153;Dels=0.00;FS=181.282;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=24.34;MQ0=14;MQRankSum=5.528;QD=7.31;ReadPosRankSum=-0.379;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,76:153:99:1149,0,476 chrXIV 781665 . T C 1110.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.982;DP=152;Dels=0.00;FS=187.198;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=24.41;MQ0=14;MQRankSum=5.957;QD=7.30;ReadPosRankSum=0.080;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,76:152:99:1140,0,496 chrXIV 781670 . C G 1102.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.126;DP=151;Dels=0.00;FS=187.198;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=24.30;MQ0=14;MQRankSum=4.952;QD=7.30;ReadPosRankSum=1.644;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,76:151:99:1132,0,458 chrXIV 781677 . G T 1193.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.187;DP=152;Dels=0.00;FS=195.839;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=24.14;MQ0=14;MQRankSum=5.523;QD=7.85;ReadPosRankSum=2.784;SB=-6.516e-03 GT:AD:DP:GQ:PL 0/1:72,80:152:99:1223,0,417 chrXIV 781691 . A G 1633 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=16.6013;MLEAC=2;MLEAF=1.00;MQ=23.80;MQ0=14;MQRankSum=1.494;QD=13.96;ReadPosRankSum=2.402;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:2,115:117:99:1666,192,0 chrXIV 781699 . A G 1445 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.400;DP=105;Dels=0.00;FS=17.325;HaplotypeScore=19.7565;MLEAC=2;MLEAF=1.00;MQ=23.95;MQ0=12;MQRankSum=1.831;QD=13.76;ReadPosRankSum=3.603;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:17,88:105:99:1478,174,0 chrXIV 781700 . A T 1336 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.884;DP=102;Dels=0.00;FS=122.166;HaplotypeScore=17.3124;MLEAC=2;MLEAF=1.00;MQ=23.94;MQ0=12;MQRankSum=3.993;QD=13.10;ReadPosRankSum=4.008;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:10,70:102:99:1369,111,0 chrXIV 781706 . T C 1342 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.392;DP=96;Dels=0.00;FS=76.430;HaplotypeScore=9.4537;MLEAC=2;MLEAF=1.00;MQ=25.61;MQ0=6;MQRankSum=1.392;QD=13.98;ReadPosRankSum=2.466;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,91:96:99:1375,117,0 chrXIV 781725 . G C 1167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.085;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=25.75;MQ0=3;MQRankSum=2.348;QD=12.03;ReadPosRankSum=1.147;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:12,84:97:63:1200,63,0 chrXIV 781730 . A G 1057 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.922;DP=97;Dels=0.00;FS=8.545;HaplotypeScore=5.0037;MLEAC=2;MLEAF=1.00;MQ=25.20;MQ0=4;MQRankSum=2.388;QD=10.90;ReadPosRankSum=2.033;SB=-6.530e-03 GT:AD:DP:GQ:PL 1/1:16,81:97:57:1090,57,0 chrXIV 781770 . A G 711.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.102;DP=117;Dels=0.00;FS=131.586;HaplotypeScore=20.4931;MLEAC=1;MLEAF=0.500;MQ=22.12;MQ0=12;MQRankSum=1.613;QD=6.08;ReadPosRankSum=3.673;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,68:117:99:741,0,388 chrXIV 781771 . T C 184.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.129;DP=117;Dels=0.00;FS=95.567;HaplotypeScore=20.4931;MLEAC=1;MLEAF=0.500;MQ=22.02;MQ0=12;MQRankSum=0.143;QD=1.57;ReadPosRankSum=-4.949;SB=-2.931e+00 GT:AD:DP:GQ:PL 0/1:90,27:117:99:214,0,960 chrXIV 781799 . A G 1218 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.175;DP=110;Dels=0.00;FS=2.362;HaplotypeScore=44.3088;MLEAC=2;MLEAF=1.00;MQ=19.88;MQ0=15;MQRankSum=3.092;QD=11.07;ReadPosRankSum=1.292;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:5,105:110:99:1251,156,0 chrXIV 781802 . A T 370.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.887;DP=111;Dels=0.00;FS=52.708;HaplotypeScore=40.6453;MLEAC=1;MLEAF=0.500;MQ=19.82;MQ0=15;MQRankSum=0.207;QD=3.33;ReadPosRankSum=4.320;SB=-1.139e+02 GT:AD:DP:GQ:PL 0/1:62,43:111:99:400,0,493 chrXIV 781858 . G A 214 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=11.02;MQ0=40;QD=3.15;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,66:68:33:247,33,0 chrXIV 781877 . T C 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.789;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=9.60;MQ0=37;MQRankSum=1.491;QD=0.22;ReadPosRankSum=0.060;SB=-6.508e-03 GT:AD:DP:GQ:PL 0/1:52,9:61:43:43,0,53 chrXIV 781880 . T C 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=8.95;MQ0=37;MQRankSum=2.127;QD=0.23;ReadPosRankSum=-0.228;SB=-5.437e-03 GT:AD:DP:GQ:PL 0/1:49,9:58:33:43,0,33 chrXIV 781885 . A C 66.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.68;MQ0=37;QD=1.21;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,55:55:12:99,12,0 chrXIV 781889 . C T 64.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.84;MQ0=35;QD=1.22;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,53:53:12:97,12,0 chrXIV 783108 . A G 75.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.52;MQ0=1;QD=12.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:15:108,15,0 chrXIV 783111 . G A 75.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.52;MQ0=1;QD=12.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:15:108,15,0 chrXIV 783116 . G A 75.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.52;MQ0=1;QD=12.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:15:108,15,0 chrXIV 783119 . T G 75.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.37;MQ0=2;QD=10.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,6:7:15:108,15,0 chrXIV 783131 . T A 75.26 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.96;MQ0=13;QD=3.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:15:108,15,0 chrXIV 783447 . C T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.009;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=9.8510;MLEAC=1;MLEAF=0.500;MQ=17.99;MQ0=17;MQRankSum=2.083;QD=0.37;ReadPosRankSum=-0.417;SB=-7.065e-03 GT:AD:DP:GQ:PL 0/1:24,12:36:36:43,0,36 chrXIV 783485 . G A 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.946;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=22.9776;MLEAC=1;MLEAF=0.500;MQ=20.10;MQ0=16;MQRankSum=-3.453;QD=0.34;ReadPosRankSum=-0.006;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,68:91:61:61,0,165 chrXIV 783490 . A C 225.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.824;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=24.8094;MLEAC=2;MLEAF=1.00;MQ=19.75;MQ0=18;MQRankSum=2.100;QD=2.37;ReadPosRankSum=1.728;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:20,75:95:12:258,12,0 chrXIV 783491 . G T 229.33 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.500;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=24.8094;MLEAC=2;MLEAF=1.00;MQ=19.75;MQ0=18;MQRankSum=0.490;QD=2.41;ReadPosRankSum=-1.140;SB=2.67 GT:AD:DP:GQ:PL 1/1:23,72:95:14:262,14,0 chrXIV 783507 . T A 375 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=16.1460;MLEAC=2;MLEAF=1.00;MQ=20.07;MQ0=17;MQRankSum=-1.892;QD=2.91;ReadPosRankSum=2.937;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:3,126:129:48:408,48,0 chrXIV 783551 . G A 607 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.154;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=64.4009;MLEAC=2;MLEAF=1.00;MQ=22.37;MQ0=27;MQRankSum=2.020;QD=3.08;ReadPosRankSum=2.103;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:5,192:197:72:640,72,0 chrXIV 783558 . T C 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=67.1574;MLEAC=1;MLEAF=0.500;MQ=22.65;MQ0=27;MQRankSum=4.111;QD=0.64;ReadPosRankSum=3.758;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,94:196:99:156,0,251 chrXIV 783584 . T C 357 filter AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=21.9878;MLEAC=2;MLEAF=1.00;MQ=23.78;MQ0=16;QD=2.40;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,149:149:45:390,45,0 chrXIV 783585 . C A 83.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.887;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=106.5803;MLEAC=1;MLEAF=0.500;MQ=23.78;MQ0=16;MQRankSum=2.286;QD=0.56;ReadPosRankSum=0.721;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,33:149:99:113,0,189 chrXIV 783626 . G A,T 38.62 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.275;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=40.6204;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.09;MQ0=3;MQRankSum=6.117;QD=0.52;ReadPosRankSum=-3.560;SB=-3.617e+00 GT:AD:DP:GQ:PL 1/2:23,35,16:74:31:95,31,59,33,0,61 chrXIV 783658 . C A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.079;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=24.3148;MLEAC=2;MLEAF=1.00;MQ=18.57;MQ0=0;MQRankSum=-0.315;QD=0.71;ReadPosRankSum=0.567;SB=1.24 GT:AD:DP:GQ:PL 1/1:3,14:17:6:43,6,0 chrXIV 783659 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=29.9827;MLEAC=2;MLEAF=1.00;MQ=18.00;MQ0=0;QD=0.45;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,24:27:6:43,6,0 chrXIV 783704 . G A 2188.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;DP=261;Dels=0.00;FS=105.851;HaplotypeScore=49.2932;MLEAC=1;MLEAF=0.500;MQ=20.59;MQ0=12;MQRankSum=-0.315;QD=8.38;ReadPosRankSum=9.115;SB=-1.910e+02 GT:AD:DP:GQ:PL 0/1:126,135:261:99:2218,0,1111 chrXIV 783712 . G C 2088.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.873;DP=313;Dels=0.02;FS=107.961;HaplotypeScore=104.4668;MLEAC=1;MLEAF=0.500;MQ=21.72;MQ0=16;MQRankSum=-2.556;QD=6.67;ReadPosRankSum=11.517;SB=-1.190e+02 GT:AD:DP:GQ:PL 0/1:173,135:308:99:2118,0,1553 chrXIV 783714 . G A 71.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.229;DP=356;Dels=0.00;FS=26.701;HaplotypeScore=186.1217;MLEAC=1;MLEAF=0.500;MQ=22.26;MQ0=17;MQRankSum=4.139;QD=0.20;ReadPosRankSum=0.413;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:303,44:356:99:101,0,4059 chrXIV 783722 . A G 2008.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.623;DP=451;Dels=0.00;FS=79.634;HaplotypeScore=281.8989;MLEAC=1;MLEAF=0.500;MQ=23.48;MQ0=23;MQRankSum=-6.375;QD=4.45;ReadPosRankSum=9.073;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:300,150:451:99:2038,0,3622 chrXIV 783724 . G A 3233.06 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.749;DP=464;Dels=0.04;FS=54.727;HaplotypeScore=262.9143;MLEAC=1;MLEAF=0.500;MQ=23.52;MQ0=25;MQRankSum=6.371;QD=6.97;ReadPosRankSum=-12.190;SB=-1.741e+03 GT:AD:DP:GQ:PL 0/1:207,239:447:99:3263,0,2814 chrXIV 783745 . G A 1392.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;DP=591;Dels=0.01;FS=104.536;HaplotypeScore=108.3194;MLEAC=1;MLEAF=0.500;MQ=24.43;MQ0=32;MQRankSum=-8.297;QD=2.36;ReadPosRankSum=-10.264;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:447,141:588:99:1422,0,6956 chrXIV 783798 . G C 7816.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.815;DP=445;Dels=0.00;FS=10.653;HaplotypeScore=88.5192;MLEAC=2;MLEAF=1.00;MQ=25.89;MQ0=24;MQRankSum=7.545;QD=17.56;ReadPosRankSum=-2.593;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:43,402:445:99:7816,438,0 chrXIV 783818 . G A 1042.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.251;DP=207;Dels=0.00;FS=1.324;HaplotypeScore=43.5849;MLEAC=1;MLEAF=0.500;MQ=24.33;MQ0=11;MQRankSum=6.874;QD=5.03;ReadPosRankSum=-7.962;SB=-3.510e+02 GT:AD:DP:GQ:PL 0/1:61,146:207:99:1072,0,439 chrXIV 783825 . G A 280.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.409;DP=129;Dels=0.00;FS=12.377;HaplotypeScore=34.1065;MLEAC=1;MLEAF=0.500;MQ=23.20;MQ0=6;MQRankSum=-6.510;QD=2.17;ReadPosRankSum=7.178;SB=-1.510e+02 GT:AD:DP:GQ:PL 0/1:90,39:129:99:310,0,1277 chrXIV 783827 . A G 677.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.978;DP=114;Dels=0.00;FS=48.387;HaplotypeScore=30.9771;MLEAC=1;MLEAF=0.500;MQ=22.54;MQ0=6;MQRankSum=4.055;QD=5.94;ReadPosRankSum=-3.354;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:68,46:114:99:707,0,494 chrXIV 783832 . G A 814 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.147;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=22.1304;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=4;MQRankSum=-1.488;QD=10.57;ReadPosRankSum=1.683;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:3,73:77:97:847,97,0 chrXIV 783845 . T C 159.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.177;DP=102;Dels=0.00;FS=50.380;HaplotypeScore=3.6516;MLEAC=1;MLEAF=0.500;MQ=20.54;MQ0=4;MQRankSum=2.366;QD=1.56;ReadPosRankSum=0.726;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:62,40:102:99:189,0,691 chrXIV 783871 . G A 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=181;Dels=0.00;FS=50.006;HaplotypeScore=361.4139;MLEAC=2;MLEAF=1.00;MQ=22.90;MQ0=1;MQRankSum=1.369;QD=8.69;ReadPosRankSum=8.988;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:37,144:181:99:1606,179,0 chrXIV 783880 . A G 403.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.581;DP=197;Dels=0.00;FS=150.804;HaplotypeScore=467.9729;MLEAC=1;MLEAF=0.500;MQ=22.93;MQ0=1;MQRankSum=3.402;QD=2.05;ReadPosRankSum=0.198;SB=-2.370e+02 GT:AD:DP:GQ:PL 0/1:96,101:197:99:433,0,105 chrXIV 783883 . G A 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973;DP=225;Dels=0.00;FS=23.053;HaplotypeScore=510.1934;MLEAC=1;MLEAF=0.500;MQ=22.89;MQ0=1;MQRankSum=2.825;QD=0.17;ReadPosRankSum=-2.903;SB=-1.940e+02 GT:AD:DP:GQ:PL 0/1:167,58:225:69:69,0,438 chrXIV 783886 . A C 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;DP=259;Dels=0.05;FS=3.387;HaplotypeScore=634.3113;MLEAC=1;MLEAF=0.500;MQ=23.46;MQ0=0;MQRankSum=1.988;QD=0.08;ReadPosRankSum=1.306;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:239,8:247:51:51,0,421 chrXIV 783894 . A T 162.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;DP=285;Dels=0.00;FS=179.855;HaplotypeScore=225.1901;MLEAC=1;MLEAF=0.500;MQ=23.38;MQ0=0;MQRankSum=-2.682;QD=0.57;ReadPosRankSum=2.141;SB=-6.201e+01 GT:AD:DP:GQ:PL 0/1:98,112:285:99:192,0,547 chrXIV 783911 . A G 50.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;DP=408;Dels=0.00;FS=67.421;HaplotypeScore=451.1856;MLEAC=1;MLEAF=0.500;MQ=24.62;MQ0=0;MQRankSum=3.054;QD=0.12;ReadPosRankSum=1.255;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:369,38:407:80:80,0,1716 chrXIV 783914 . T G 2260 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.723;DP=406;Dels=0.00;FS=0.000;HaplotypeScore=555.3695;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;MQRankSum=0.935;QD=5.57;ReadPosRankSum=-0.480;SB=-3.295e+03 GT:AD:DP:GQ:PL 1/1:1,403:404:99:2293,270,0 chrXIV 783920 . A G 1458 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.923;DP=387;Dels=0.00;FS=50.498;HaplotypeScore=421.9943;MLEAC=2;MLEAF=1.00;MQ=24.66;MQ0=0;MQRankSum=1.123;QD=3.77;ReadPosRankSum=-1.600;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:42,345:387:99:1491,183,0 chrXIV 783922 . G T 1118.09 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.400;DP=383;Dels=0.00;FS=39.356;HaplotypeScore=381.6951;MLEAC=1;MLEAF=0.500;MQ=24.72;MQ0=0;MQRankSum=6.172;QD=2.92;ReadPosRankSum=9.593;SB=-2.309e+03 GT:AD:DP:GQ:PL 0/1:115,268:383:14:1148,0,14 chrXIV 783929 . A G 2413 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=511;Dels=0.00;FS=0.000;HaplotypeScore=354.7330;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;MQRankSum=1.088;QD=4.72;ReadPosRankSum=1.725;SB=-5.096e+03 GT:AD:DP:GQ:PL 1/1:1,510:511:99:2446,285,0 chrXIV 783940 . G A 80.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.023;DP=499;Dels=0.00;FS=9.634;HaplotypeScore=658.1445;MLEAC=1;MLEAF=0.500;MQ=26.79;MQ0=0;MQRankSum=2.433;QD=0.16;ReadPosRankSum=-2.497;SB=-1.790e+02 GT:AD:DP:GQ:PL 0/1:421,78:499:99:110,0,1970 chrXIV 783947 . G T 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.037;DP=479;Dels=0.00;FS=87.217;HaplotypeScore=621.6219;MLEAC=1;MLEAF=0.500;MQ=26.83;MQ0=0;MQRankSum=3.848;QD=0.06;ReadPosRankSum=1.535;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:140,70:479:60:60,0,194 chrXIV 783968 . C A 2933 filter AC=2;AF=1.00;AN=2;DP=468;Dels=0.00;FS=0.000;HaplotypeScore=165.0151;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=0;QD=6.27;SB=-4.670e+03 GT:AD:DP:GQ:PL 1/1:0,468:468:99:2966,339,0 chrXIV 783972 . A G,T 2468.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=4.023;DP=458;Dels=0.00;FS=46.441;HaplotypeScore=71.1873;MLEAC=1,1;MLEAF=0.500,0.500;MQ=26.76;MQ0=0;MQRankSum=1.575;QD=5.39;ReadPosRankSum=1.090;SB=-3.072e+03 GT:AD:DP:GQ:PL 1/2:27,341,90:458:99:2528,358,162,2099,0,2125 chrXIV 784001 . A G 800.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.426;DP=262;Dels=0.03;FS=38.452;HaplotypeScore=713.2170;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;MQRankSum=0.840;QD=3.06;ReadPosRankSum=-6.443;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:92,161:253:9:833,9,0 chrXIV 784012 . G A 610.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;DP=245;Dels=0.02;FS=12.504;HaplotypeScore=700.6616;MLEAC=1;MLEAF=0.500;MQ=25.95;MQ0=1;MQRankSum=2.784;QD=2.49;ReadPosRankSum=-2.905;SB=-3.370e+02 GT:AD:DP:GQ:PL 0/1:159,81:240:99:640,0,245 chrXIV 784023 . G A 157.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.189;DP=207;Dels=0.00;FS=3.378;HaplotypeScore=295.4830;MLEAC=1;MLEAF=0.500;MQ=25.13;MQ0=1;MQRankSum=3.186;QD=0.76;ReadPosRankSum=7.078;SB=-4.810e+02 GT:AD:DP:GQ:PL 0/1:137,68:207:99:187,0,527 chrXV 48 . A C 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.178;DP=98;Dels=0.03;FS=0.000;HaplotypeScore=132.4499;MLEAC=1;MLEAF=0.500;MQ=24.68;MQ0=1;MQRankSum=0.182;QD=1.29;ReadPosRankSum=0.597;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,27:95:99:156,0,456 chrXV 138 . C T 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.726;DP=44;Dels=0.00;FS=2.623;HaplotypeScore=18.3174;MLEAC=1;MLEAF=0.500;MQ=22.22;MQ0=0;MQRankSum=-0.117;QD=0.55;ReadPosRankSum=1.950;SB=-7.901e+01 GT:AD:DP:GQ:PL 0/1:21,23:44:34:54,0,34 chrXV 139 . C T 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.598;DP=44;Dels=0.00;FS=2.623;HaplotypeScore=13.4303;MLEAC=1;MLEAF=0.500;MQ=22.22;MQ0=0;MQRankSum=-0.305;QD=0.55;ReadPosRankSum=1.621;SB=-7.901e+01 GT:AD:DP:GQ:PL 0/1:21,23:44:34:54,0,34 chrXV 150 . C T 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.384;DP=77;Dels=0.00;FS=8.400;HaplotypeScore=29.4204;MLEAC=1;MLEAF=0.500;MQ=20.90;MQ0=0;MQRankSum=1.284;QD=0.45;ReadPosRankSum=-0.630;SB=-1.930e+02 GT:AD:DP:GQ:PL 0/1:6,27:77:51:65,0,51 chrXV 151 . A C 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.293;DP=77;Dels=0.00;FS=19.766;HaplotypeScore=29.4204;MLEAC=1;MLEAF=0.500;MQ=20.90;MQ0=0;MQRankSum=-0.656;QD=0.53;ReadPosRankSum=-0.452;SB=-3.620e+02 GT:AD:DP:GQ:PL 0/1:10,59:77:71:71,0,75 chrXV 170 . T C 284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=60.0249;MLEAC=2;MLEAF=1.00;MQ=19.50;MQ0=0;MQRankSum=0.137;QD=2.41;ReadPosRankSum=2.408;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:2,115:117:42:317,42,0 chrXV 175 . T C 142.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.775;DP=129;Dels=0.02;FS=95.815;HaplotypeScore=64.6158;MLEAC=1;MLEAF=0.500;MQ=19.26;MQ0=0;MQRankSum=-2.486;QD=1.10;ReadPosRankSum=0.241;SB=-9.055e+01 GT:AD:DP:GQ:PL 0/1:37,90:127:78:172,0,78 chrXV 193 . C T 479 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.7110;MLEAC=2;MLEAF=1.00;MQ=19.46;MQ0=0;QD=3.45;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,134:139:66:512,66,0 chrXV 200 . T C 397.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.209;DP=137;Dels=0.00;FS=65.078;HaplotypeScore=17.0214;MLEAC=1;MLEAF=0.500;MQ=19.39;MQ0=0;MQRankSum=-0.376;QD=2.90;ReadPosRankSum=3.064;SB=-3.847e+02 GT:AD:DP:GQ:PL 0/1:15,122:137:5:427,0,5 chrXV 213 . G C 91.26 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=25.8298;MLEAC=2;MLEAF=1.00;MQ=19.36;MQ0=0;QD=0.78;SB=-2.763e+02 GT:AD:DP:GQ:PL 1/1:0,43:117:15:124,15,0 chrXV 215 . G C 110.13 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=25.8298;MLEAC=2;MLEAF=1.00;MQ=19.36;MQ0=0;QD=0.94;SB=-5.371e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:18:143,18,0 chrXV 219 . C T 179.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.237;DP=121;Dels=0.00;FS=177.726;HaplotypeScore=39.2951;MLEAC=1;MLEAF=0.500;MQ=19.51;MQ0=0;MQRankSum=-3.354;QD=1.48;ReadPosRankSum=2.834;SB=-1.068e-03 GT:AD:DP:GQ:PL 0/1:45,76:121:99:209,0,113 chrXV 222 . G C 402 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=52.8482;MLEAC=2;MLEAF=1.00;MQ=19.53;MQ0=0;QD=3.35;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:57:435,57,0 chrXV 228 . C T 351 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.288;DP=107;Dels=0.00;FS=2.231;HaplotypeScore=68.3557;MLEAC=2;MLEAF=1.00;MQ=19.05;MQ0=0;MQRankSum=-1.395;QD=3.28;ReadPosRankSum=2.531;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:5,102:107:51:384,51,0 chrXV 229 . A C 346 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.996;DP=107;Dels=0.00;FS=2.231;HaplotypeScore=76.0814;MLEAC=2;MLEAF=1.00;MQ=19.05;MQ0=0;MQRankSum=-1.395;QD=3.23;ReadPosRankSum=2.531;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:5,102:107:51:379,51,0 chrXV 236 . C T 166.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.790;DP=133;Dels=0.00;FS=19.679;HaplotypeScore=95.1776;MLEAC=1;MLEAF=0.500;MQ=21.00;MQ0=1;MQRankSum=4.707;QD=1.25;ReadPosRankSum=-4.419;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,43:133:99:196,0,275 chrXV 239 . C A 561.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;DP=146;Dels=0.00;FS=56.599;HaplotypeScore=100.4845;MLEAC=1;MLEAF=0.500;MQ=22.27;MQ0=2;MQRankSum=4.316;QD=3.84;ReadPosRankSum=-2.113;SB=-3.980e+02 GT:AD:DP:GQ:PL 0/1:60,68:146:99:591,0,162 chrXV 281 . C T 1633 filter AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.6628;MLEAC=2;MLEAF=1.00;MQ=25.29;MQ0=6;QD=10.40;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:1666,189,0 chrXV 321 . C A 1432 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.652;DP=175;Dels=0.00;FS=20.916;HaplotypeScore=33.8817;MLEAC=2;MLEAF=1.00;MQ=26.72;MQ0=4;MQRankSum=0.392;QD=8.18;ReadPosRankSum=-4.768;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:61,114:175:67:1465,67,0 chrXV 333 . T C 636 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=26.06;MQ0=3;MQRankSum=2.589;QD=4.85;ReadPosRankSum=2.702;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:3,125:131:78:669,78,0 chrXV 337 . C G 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.189;DP=104;Dels=0.00;FS=3.500;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=25.63;MQ0=2;MQRankSum=0.480;QD=0.34;ReadPosRankSum=-0.687;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:78,26:104:65:65,0,276 chrXV 340 . G C 333 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.4147;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=3;QD=3.40;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,98:98:42:366,42,0 chrXV 348 . T C 344.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.003;DP=118;Dels=0.00;FS=3.944;HaplotypeScore=6.1781;MLEAC=2;MLEAF=1.00;MQ=25.65;MQ0=4;MQRankSum=-1.253;QD=2.92;ReadPosRankSum=1.476;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:23,95:118:3:374,3,0 chrXV 370 . T C 1024 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.574;DP=202;Dels=0.00;FS=6.031;HaplotypeScore=14.6029;MLEAC=2;MLEAF=1.00;MQ=22.08;MQ0=8;MQRankSum=0.057;QD=5.07;ReadPosRankSum=2.262;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:39,163:202:78:1057,78,0 chrXV 371 . A G 1057 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.202;DP=203;Dels=0.00;FS=3.685;HaplotypeScore=15.3916;MLEAC=2;MLEAF=1.00;MQ=21.94;MQ0=9;MQRankSum=-0.724;QD=5.21;ReadPosRankSum=1.897;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:37,164:203:99:1090,106,0 chrXV 380 . C T 1264 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.537;DP=222;Dels=0.00;FS=19.714;HaplotypeScore=28.5157;MLEAC=2;MLEAF=1.00;MQ=21.57;MQ0=11;MQRankSum=0.626;QD=5.69;ReadPosRankSum=4.926;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:36,186:222:89:1297,89,0 chrXV 410 . A G 989.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639;DP=191;Dels=0.00;FS=5.706;HaplotypeScore=23.4344;MLEAC=1;MLEAF=0.500;MQ=19.94;MQ0=10;MQRankSum=-1.695;QD=5.18;ReadPosRankSum=2.249;SB=-8.780e+02 GT:AD:DP:GQ:PL 0/1:45,145:191:99:1019,0,326 chrXV 426 . C T 205.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;DP=167;Dels=0.01;FS=15.688;HaplotypeScore=42.7933;MLEAC=1;MLEAF=0.500;MQ=19.47;MQ0=9;MQRankSum=2.351;QD=1.23;ReadPosRankSum=6.105;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:129,36:165:99:235,0,860 chrXV 455 . T C 94.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.969;DP=88;Dels=0.00;FS=63.913;HaplotypeScore=14.3476;MLEAC=1;MLEAF=0.500;MQ=22.35;MQ0=7;MQRankSum=-2.493;QD=1.07;ReadPosRankSum=0.330;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,13:88:99:124,0,504 chrXV 467 . T C 650 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.214;DP=83;Dels=0.00;FS=3.728;HaplotypeScore=6.4560;MLEAC=2;MLEAF=1.00;MQ=22.77;MQ0=4;MQRankSum=1.773;QD=7.83;ReadPosRankSum=2.715;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:14,69:83:49:683,49,0 chrXV 475 . C G 541 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9135;MLEAC=2;MLEAF=1.00;MQ=24.51;MQ0=2;QD=8.87;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:66:574,66,0 chrXV 480 . C A 905 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.076;DP=82;Dels=0.00;FS=35.105;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=1;MQRankSum=1.659;QD=11.04;ReadPosRankSum=2.389;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:2,80:82:68:938,68,0 chrXV 483 . C A 948 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=1;MQRankSum=-0.084;QD=11.42;ReadPosRankSum=1.690;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:981,105,0 chrXV 495 . T C 333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.384;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=168.2354;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=3;MQRankSum=2.001;QD=2.62;ReadPosRankSum=-4.576;SB=-4.200e+01 GT:AD:DP:GQ:PL 1/1:106,21:127:42:366,42,0 chrXV 525 . T C 2853 filter AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.6120;MLEAC=2;MLEAF=1.00;MQ=27.00;MQ0=4;QD=16.30;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2886,318,0 chrXV 529 . C T 1270.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.599;DP=179;Dels=0.00;FS=7.273;HaplotypeScore=1.4972;MLEAC=1;MLEAF=0.500;MQ=27.09;MQ0=4;MQRankSum=2.867;QD=7.10;ReadPosRankSum=-3.041;SB=-9.301e+01 GT:AD:DP:GQ:PL 0/1:87,92:179:99:1300,0,895 chrXV 575 . C T 271.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.451;DP=160;Dels=0.00;FS=25.591;HaplotypeScore=3.7796;MLEAC=1;MLEAF=0.500;MQ=26.33;MQ0=4;MQRankSum=-0.010;QD=1.69;ReadPosRankSum=-4.759;SB=-2.340e+02 GT:AD:DP:GQ:PL 0/1:118,42:160:99:301,0,1737 chrXV 594 . G A 1457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.3881;MLEAC=2;MLEAF=1.00;MQ=25.24;MQ0=2;MQRankSum=1.438;QD=13.49;ReadPosRankSum=0.948;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1490,162,0 chrXV 612 . T C 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.281;DP=87;Dels=0.00;FS=21.044;HaplotypeScore=27.6215;MLEAC=1;MLEAF=0.500;MQ=24.81;MQ0=1;MQRankSum=0.177;QD=0.12;ReadPosRankSum=4.095;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,15:87:40:40,0,541 chrXV 618 . T G 564 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=12.7461;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=1;QD=9.89;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,48:57:69:597,69,0 chrXV 628 . C A 174.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.947;DP=38;Dels=0.00;FS=16.385;HaplotypeScore=1.4105;MLEAC=1;MLEAF=0.500;MQ=21.59;MQ0=1;MQRankSum=0.935;QD=4.58;ReadPosRankSum=-2.069;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:16,22:38:44:204,0,44 chrXV 635 . A C 75.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.689;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=19.03;MQ0=1;MQRankSum=0.028;QD=2.88;ReadPosRankSum=1.137;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:15,11:26:56:105,0,56 chrXV 636 . T G 155.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=18.52;MQ0=1;QD=6.20;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:24:188,24,0 chrXV 637 . T C 158.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=18.52;MQ0=1;QD=6.32;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:24:191,24,0 chrXV 648 . C A 75.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.92;MQ0=1;MQRankSum=0.454;QD=3.76;ReadPosRankSum=1.197;SB=2.74 GT:AD:DP:GQ:PL 1/1:11,9:20:15:108,15,0 chrXV 649 . T C 75.26 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.03;MQ0=1;QD=3.96;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:15:108,15,0 chrXV 674 . T C 173.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=9.7340;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=0;QD=15.73;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:24:206,24,0 chrXV 676 . G A 61.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.663;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=9.7340;MLEAC=1;MLEAF=0.500;MQ=25.93;MQ0=0;MQRankSum=0.000;QD=5.55;ReadPosRankSum=-0.896;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:4,7:11:77:91,0,77 chrXV 683 . A C 219 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=10.6281;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=0;QD=13.69;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:30:252,30,0 chrXV 701 . C T 244 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=7.8935;MLEAC=2;MLEAF=1.00;MQ=26.60;MQ0=1;QD=12.20;SB=-1.506e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:30:277,30,0 chrXV 705 . A G 142.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.315;DP=23;Dels=0.00;FS=7.659;HaplotypeScore=6.9295;MLEAC=1;MLEAF=0.500;MQ=25.79;MQ0=1;MQRankSum=-0.249;QD=6.17;ReadPosRankSum=1.244;SB=-8.690e-03 GT:AD:DP:GQ:PL 0/1:11,12:23:30:172,0,30 chrXV 709 . C T 133.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.856;DP=26;Dels=0.00;FS=6.576;HaplotypeScore=14.2638;MLEAC=1;MLEAF=0.500;MQ=26.08;MQ0=1;MQRankSum=0.952;QD=5.12;ReadPosRankSum=2.312;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,12:26:99:163,0,99 chrXV 710 . A C 125.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;DP=26;Dels=0.00;FS=6.576;HaplotypeScore=14.2638;MLEAC=1;MLEAF=0.500;MQ=26.08;MQ0=1;MQRankSum=1.061;QD=4.81;ReadPosRankSum=2.312;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,12:26:99:155,0,105 chrXV 714 . G A 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;DP=27;Dels=0.00;FS=2.679;HaplotypeScore=16.2470;MLEAC=1;MLEAF=0.500;MQ=26.19;MQ0=1;MQRankSum=0.347;QD=0.93;ReadPosRankSum=-2.833;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,7:27:55:55,0,235 chrXV 719 . A G 147.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.443;DP=27;Dels=0.00;FS=2.366;HaplotypeScore=17.1798;MLEAC=1;MLEAF=0.500;MQ=26.19;MQ0=1;MQRankSum=-0.952;QD=5.44;ReadPosRankSum=2.495;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,14:27:99:177,0,103 chrXV 721 . T C 257 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=13.4062;MLEAC=2;MLEAF=1.00;MQ=25.72;MQ0=2;QD=9.18;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,25:28:33:290,33,0 chrXV 731 . C T 143.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;DP=40;Dels=0.00;FS=2.045;HaplotypeScore=14.2590;MLEAC=1;MLEAF=0.500;MQ=25.48;MQ0=2;MQRankSum=0.222;QD=3.58;ReadPosRankSum=2.498;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,16:40:99:173,0,156 chrXV 732 . G A 308.64 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.164;DP=41;Dels=0.00;FS=4.298;HaplotypeScore=12.2758;MLEAC=1;MLEAF=0.500;MQ=25.16;MQ0=3;MQRankSum=-0.214;QD=7.53;ReadPosRankSum=-1.260;SB=-2.745e+01 GT:AD:DP:GQ:PL 0/1:6,34:41:5:338,0,5 chrXV 739 . A G 103.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;DP=47;Dels=0.00;FS=11.932;HaplotypeScore=13.2705;MLEAC=1;MLEAF=0.500;MQ=24.53;MQ0=4;MQRankSum=1.465;QD=2.19;ReadPosRankSum=-1.071;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,18:47:99:133,0,223 chrXV 752 . A T 141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.124;DP=51;Dels=0.00;FS=14.936;HaplotypeScore=9.4929;MLEAC=1;MLEAF=0.500;MQ=23.70;MQ0=5;MQRankSum=1.957;QD=2.76;ReadPosRankSum=2.942;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,18:51:99:171,0,167 chrXV 764 . G T 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;DP=43;Dels=0.00;FS=5.184;HaplotypeScore=2.8663;MLEAC=1;MLEAF=0.500;MQ=22.55;MQ0=5;MQRankSum=0.172;QD=0.98;ReadPosRankSum=-0.961;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,9:43:72:72,0,182 chrXV 770 . G A 239 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.77;MQ0=5;QD=6.46;SB=-5.502e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:30:272,30,0 chrXV 815 . C T 96.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.660;DP=17;Dels=0.00;FS=7.160;HaplotypeScore=1.8991;MLEAC=2;MLEAF=1.00;MQ=19.06;MQ0=4;MQRankSum=2.281;QD=5.66;ReadPosRankSum=-1.200;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:11,6:17:15:129,15,0 chrXV 818 . T C 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.361;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=2.9712;MLEAC=2;MLEAF=1.00;MQ=17.16;MQ0=3;MQRankSum=2.219;QD=1.57;ReadPosRankSum=-1.159;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:7,5:12:6:50,6,0 chrXV 819 . T C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.881;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=2.9712;MLEAC=2;MLEAF=1.00;MQ=17.16;MQ0=3;MQRankSum=2.219;QD=1.32;ReadPosRankSum=-1.159;SB=-2.680e+01 GT:AD:DP:GQ:PL 1/1:7,5:12:6:47,6,0 chrXV 820 . C T 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.876;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=2.9712;MLEAC=2;MLEAF=1.00;MQ=17.16;MQ0=3;MQRankSum=2.219;QD=1.32;ReadPosRankSum=-1.159;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:7,5:12:6:47,6,0 chrXV 900 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.79;MQ0=7;QD=1.78;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:0,9:10:6:49,6,0 chrXV 902 . C A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.64;MQ0=7;QD=1.37;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:6:49,6,0 chrXV 976 . T C 220 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.92;MQ0=8;QD=11.00;SB=-7.695e+01 GT:AD:DP:GQ:PL 1/1:0,19:20:30:253,30,0 chrXV 989 . T C 209.01 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.01;MQ0=3;QD=16.08;SB=-7.589e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:27:242,27,0 chrXV 11298 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.96;MQ0=23;QD=0.64;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:6,31:37:6:55,6,0 chrXV 11319 . G A 49.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.000;DP=58;Dels=0.00;FS=47.023;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.87;MQ0=39;MQRankSum=3.507;QD=0.86;ReadPosRankSum=-0.296;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:50,7:58:9:82,9,0 chrXV 11321 . T C 51.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=58;Dels=0.00;FS=47.023;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.87;MQ0=39;MQRankSum=3.507;QD=0.90;ReadPosRankSum=-0.549;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:51,7:58:9:84,9,0 chrXV 11340 . G T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.201;DP=77;Dels=0.00;FS=40.264;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.05;MQ0=53;MQRankSum=3.060;QD=0.31;ReadPosRankSum=-0.194;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:73,4:77:6:55,6,0 chrXV 11343 . T C 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.173;DP=81;Dels=0.00;FS=41.746;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.97;MQ0=55;MQRankSum=3.091;QD=0.32;ReadPosRankSum=-0.178;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:77,4:81:6:57,6,0 chrXV 11349 . A G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.900;DP=84;Dels=0.00;FS=49.925;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.10;MQ0=56;MQRankSum=3.419;QD=0.28;ReadPosRankSum=-1.380;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:79,5:84:6:55,6,0 chrXV 11350 . C G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=86;Dels=0.00;FS=50.747;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.07;MQ0=57;MQRankSum=3.435;QD=0.28;ReadPosRankSum=-1.184;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:81,5:86:6:55,6,0 chrXV 11352 . A G 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.126;DP=86;Dels=0.00;FS=50.747;HaplotypeScore=2.9628;MLEAC=2;MLEAF=1.00;MQ=8.07;MQ0=57;MQRankSum=3.435;QD=0.24;ReadPosRankSum=-1.299;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:81,5:86:6:52,6,0 chrXV 11377 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.375;DP=80;Dels=0.00;FS=42.443;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=7.02;MQ0=52;MQRankSum=1.536;QD=0.27;ReadPosRankSum=-1.809;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:75,4:80:6:53,6,0 chrXV 11381 . A G 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.990;DP=78;Dels=0.00;FS=42.443;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=7.03;MQ0=51;MQRankSum=1.536;QD=0.29;ReadPosRankSum=-1.467;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:74,4:78:6:54,6,0 chrXV 11455 . A T 124.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=1;QD=11.28;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:157,18,0 chrXV 11541 . A G 29.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=7;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.05;MQ0=2;MQRankSum=-1.231;QD=4.15;ReadPosRankSum=1.231;SB=-2.096e+00 GT:AD:DP:GQ:PL 0/1:2,5:7:16:59,0,16 chrXV 11543 . C T 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.54;MQ0=2;MQRankSum=-0.736;QD=4.87;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,7:8:9:71,9,0 chrXV 11544 . A T 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.54;MQ0=2;MQRankSum=-0.736;QD=4.87;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,7:8:9:71,9,0 chrXV 11613 . G C 35.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.23;MQ0=3;QD=4.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:9:68,9,0 chrXV 11633 . G A 121.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.45;MQ0=1;MQRankSum=1.589;QD=13.46;ReadPosRankSum=1.589;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,6:9:18:154,18,0 chrXV 11636 . G A 121.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.48;MQ0=1;MQRankSum=0.742;QD=15.14;ReadPosRankSum=0.742;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,6:8:18:154,18,0 chrXV 11662 . A C 117.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.73;MQ0=1;QD=16.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:7:18:150,18,0 chrXV 11669 . A G 113.13 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.85;MQ0=4;QD=11.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,6:10:18:146,18,0 chrXV 22918 . A G 313.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.142;DP=128;Dels=0.00;FS=24.629;HaplotypeScore=14.5180;MLEAC=1;MLEAF=0.500;MQ=14.70;MQ0=88;MQRankSum=4.645;QD=2.45;ReadPosRankSum=3.265;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,40:128:99:343,0,289 chrXV 23443 . T C 1639.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.573;DP=645;Dels=0.00;FS=28.809;HaplotypeScore=43.6069;MLEAC=1;MLEAF=0.500;MQ=36.66;MQ0=32;MQRankSum=-13.888;QD=2.54;ReadPosRankSum=1.289;SB=-6.940e+02 GT:AD:DP:GQ:PL 0/1:447,198:645:99:1669,0,9108 chrXV 23719 . A G 518.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;DP=90;Dels=0.00;FS=110.475;HaplotypeScore=15.1294;MLEAC=1;MLEAF=0.500;MQ=30.34;MQ0=4;MQRankSum=3.006;QD=5.76;ReadPosRankSum=-2.073;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:43,47:90:99:548,0,311 chrXV 23725 . C T 691 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=24.89;MQ0=1;QD=12.34;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:78:724,78,0 chrXV 23728 . A G 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.581;DP=50;Dels=0.00;FS=73.042;HaplotypeScore=7.0585;MLEAC=1;MLEAF=0.500;MQ=24.06;MQ0=1;MQRankSum=3.314;QD=0.58;ReadPosRankSum=-3.114;SB=-2.982e+00 GT:AD:DP:GQ:PL 0/1:34,15:50:59:59,0,385 chrXV 23872 . C T 182.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.165;DP=201;Dels=0.00;FS=85.072;HaplotypeScore=13.3529;MLEAC=1;MLEAF=0.500;MQ=10.89;MQ0=137;MQRankSum=4.877;QD=0.91;ReadPosRankSum=-1.115;SB=-1.390e+02 GT:AD:DP:GQ:PL 0/1:176,24:201:99:212,0,134 chrXV 23902 . T C 776 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=150;Dels=0.00;FS=18.831;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=18.34;MQ0=64;MQRankSum=1.717;QD=5.17;ReadPosRankSum=3.843;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:68,81:150:45:809,45,0 chrXV 23914 . T C 938 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=138;Dels=0.00;FS=3.610;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=21.44;MQ0=45;MQRankSum=-0.225;QD=6.80;ReadPosRankSum=2.317;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:45,93:138:99:971,114,0 chrXV 23917 . T C 1008 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.449;DP=143;Dels=0.00;FS=2.312;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=21.72;MQ0=38;MQRankSum=1.854;QD=7.05;ReadPosRankSum=3.753;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:41,101:143:99:1041,123,0 chrXV 23924 . C T 334.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;DP=142;Dels=0.00;FS=4.112;HaplotypeScore=14.2397;MLEAC=1;MLEAF=0.500;MQ=23.55;MQ0=18;MQRankSum=-1.107;QD=2.35;ReadPosRankSum=-0.453;SB=-3.070e+02 GT:AD:DP:GQ:PL 0/1:71,70:142:99:364,0,512 chrXV 23971 . T C 1097 filter AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.67;MQ0=39;QD=6.23;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:36,139:176:99:1130,132,0 chrXV 23998 . C T 730 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.293;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=17.33;MQ0=89;MQRankSum=-1.957;QD=3.86;ReadPosRankSum=1.268;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:75,114:189:46:763,46,0 chrXV 24109 . G A 1572.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.482;DP=162;Dels=0.00;FS=132.828;HaplotypeScore=38.4267;MLEAC=1;MLEAF=0.500;MQ=28.11;MQ0=8;MQRankSum=-0.719;QD=9.70;ReadPosRankSum=0.229;SB=-6.320e+02 GT:AD:DP:GQ:PL 0/1:41,121:162:99:1602,0,315 chrXV 24115 . T C 335.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.506;DP=165;Dels=0.00;FS=209.388;HaplotypeScore=37.4479;MLEAC=1;MLEAF=0.500;MQ=27.07;MQ0=8;MQRankSum=4.497;QD=2.03;ReadPosRankSum=-0.577;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,44:165:99:365,0,1406 chrXV 24134 . G A 1652.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;DP=188;Dels=0.00;FS=215.285;HaplotypeScore=18.3681;MLEAC=1;MLEAF=0.500;MQ=25.51;MQ0=9;MQRankSum=-4.115;QD=8.79;ReadPosRankSum=2.820;SB=-2.590e+02 GT:AD:DP:GQ:PL 0/1:38,150:188:99:1682,0,278 chrXV 24145 . T C 1764.12 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.876;DP=188;Dels=0.00;FS=108.649;HaplotypeScore=27.0550;MLEAC=2;MLEAF=1.00;MQ=25.35;MQ0=6;MQRankSum=-2.799;QD=9.38;ReadPosRankSum=2.614;SB=-5.741e+02 GT:AD:DP:GQ:PL 1/1:18,169:188:5:1795,5,0 chrXV 24168 . C A 1086.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.058;DP=162;Dels=0.00;FS=238.895;HaplotypeScore=5.5642;MLEAC=1;MLEAF=0.500;MQ=25.18;MQ0=4;MQRankSum=-3.537;QD=6.70;ReadPosRankSum=2.919;SB=-9.902e+01 GT:AD:DP:GQ:PL 0/1:29,130:162:99:1116,0,163 chrXV 24190 . C G 962.05 SnpCluster AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=26.9432;MLEAC=1;MLEAF=0.500;MQ=22.58;MQ0=2;QD=7.29;SB=-4.871e+02 GT:AD:DP:GQ:PL 1/1:0,109:132:99:995,111,0 chrXV 24198 . T C 235.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.230;DP=118;Dels=0.00;FS=337.214;HaplotypeScore=27.1536;MLEAC=1;MLEAF=0.500;MQ=23.32;MQ0=2;MQRankSum=-5.590;QD=1.99;ReadPosRankSum=2.256;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:62,56:118:99:265,0,922 chrXV 24199 . G A 231.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.704;DP=118;Dels=0.00;FS=337.214;HaplotypeScore=27.1536;MLEAC=1;MLEAF=0.500;MQ=23.32;MQ0=2;MQRankSum=-5.667;QD=1.96;ReadPosRankSum=1.708;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:62,56:118:99:261,0,933 chrXV 24202 . G A 220.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.830;DP=118;Dels=0.00;FS=337.214;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=23.38;MQ0=2;MQRankSum=-5.839;QD=1.86;ReadPosRankSum=-0.149;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:62,56:118:99:250,0,1012 chrXV 24235 . G A 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.905;DP=133;Dels=0.00;FS=84.545;HaplotypeScore=31.5561;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;MQRankSum=2.569;QD=17.05;ReadPosRankSum=2.821;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:14,115:133:99:2300,110,0 chrXV 24239 . G A 412.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;DP=144;Dels=0.00;FS=2.402;HaplotypeScore=29.7244;MLEAC=1;MLEAF=0.500;MQ=32.43;MQ0=0;MQRankSum=2.832;QD=2.86;ReadPosRankSum=-1.147;SB=-2.970e+02 GT:AD:DP:GQ:PL 0/1:90,54:144:99:442,0,1725 chrXV 24299 . C T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=35.52;MQ0=0;QD=18.49;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4179,459,0 chrXV 24303 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=225;Dels=0.00;FS=10.529;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=35.67;MQ0=0;MQRankSum=0.016;QD=17.82;ReadPosRankSum=-0.521;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:2,222:225:99:4010,438,0 chrXV 24335 . T A 3141 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=12.3349;MLEAC=2;MLEAF=1.00;MQ=33.27;MQ0=0;QD=13.66;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,230:230:99:3174,357,0 chrXV 24352 . C T 2116 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.9198;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;QD=11.44;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,185:185:99:2149,237,0 chrXV 24362 . G A 1755 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=29.42;MQ0=0;QD=9.39;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,187:187:99:1788,192,0 chrXV 24376 . G C 1952 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.96;MQ0=2;QD=10.01;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,195:195:99:1985,225,0 chrXV 24394 . G C 2281 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.24;MQ0=2;QD=11.94;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:2314,258,0 chrXV 24403 . T C 2521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.771;DP=200;Dels=0.00;FS=7.591;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=2;MQRankSum=0.972;QD=12.60;ReadPosRankSum=3.786;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:5,195:200:99:2554,279,0 chrXV 24407 . T C 2491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=204;Dels=0.00;FS=2.577;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=30.58;MQ0=2;MQRankSum=-0.328;QD=12.21;ReadPosRankSum=2.965;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:3,201:204:99:2524,276,0 chrXV 24486 . G C 4567.01 filter AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=18;QD=15.53;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,291:294:99:4567,507,0 chrXV 24643 . C T 3644.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=16.7652;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=2;QD=21.82;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3644,387,0 chrXV 24654 . A G 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=128;Dels=0.00;FS=2.439;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=2;MQRankSum=-0.240;QD=18.63;ReadPosRankSum=2.832;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:3,125:128:99:2418,267,0 chrXV 24655 . T C 2375 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.27;MQ0=2;QD=19.47;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2408,261,0 chrXV 24669 . A G 1437 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.85;MQ0=0;QD=15.13;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1470,165,0 chrXV 24671 . T C 1398 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=0;QD=15.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1431,162,0 chrXV 24674 . C T 1390 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=0;MQRankSum=0.242;QD=14.95;ReadPosRankSum=1.695;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1423,162,0 chrXV 24675 . A G 1418 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=0;MQRankSum=-0.689;QD=15.25;ReadPosRankSum=1.695;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1451,165,0 chrXV 24676 . C A 1464 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.97;MQ0=0;QD=15.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1497,165,0 chrXV 24683 . G A 1430 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.48;MQ0=0;QD=11.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1463,159,0 chrXV 24688 . A G 1246 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.16;MQ0=0;MQRankSum=0.486;QD=10.93;ReadPosRankSum=1.702;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1279,138,0 chrXV 24700 . A C 981 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=0;MQRankSum=0.471;QD=9.62;ReadPosRankSum=2.401;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1014,111,0 chrXV 24703 . T C 904 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=24.23;MQ0=0;QD=9.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:937,102,0 chrXV 24710 . G T 225.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.026;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.11;MQ0=0;MQRankSum=-0.261;QD=2.39;ReadPosRankSum=0.828;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,46:94:99:255,0,333 chrXV 24711 . T A 287.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.94;MQ0=0;MQRankSum=-0.067;QD=3.15;ReadPosRankSum=-0.052;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,45:91:99:317,0,258 chrXV 24714 . C T 173.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.937;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.97;MQ0=0;MQRankSum=0.135;QD=1.94;ReadPosRankSum=-0.365;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,43:89:99:203,0,321 chrXV 24717 . A G 565 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.89;MQ0=0;QD=7.06;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:66:598,66,0 chrXV 24718 . C G 114.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.954;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.92;MQ0=0;MQRankSum=0.878;QD=1.37;ReadPosRankSum=0.859;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,36:83:99:144,0,331 chrXV 24719 . A G 127.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.005;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.99;MQ0=0;MQRankSum=0.917;QD=1.51;ReadPosRankSum=0.899;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,36:84:99:157,0,348 chrXV 24722 . A T 526 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.99;MQ0=0;QD=6.26;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:63:559,63,0 chrXV 24727 . C A 296.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.826;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.21;MQ0=0;MQRankSum=1.014;QD=3.61;ReadPosRankSum=1.070;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,46:82:99:326,0,122 chrXV 24732 . C T 571 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=0;QD=6.96;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:63:604,63,0 chrXV 24761 . T A 581.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.116;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.4673;MLEAC=1;MLEAF=0.500;MQ=27.51;MQ0=0;MQRankSum=1.085;QD=4.69;ReadPosRankSum=1.595;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,54:124:99:611,0,347 chrXV 24767 . C G 631.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.097;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4673;MLEAC=1;MLEAF=0.500;MQ=28.03;MQ0=0;MQRankSum=0.742;QD=5.58;ReadPosRankSum=-1.615;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,56:113:99:661,0,297 chrXV 24811 . T C 2066 filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=109.4228;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;QD=15.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2099,228,0 chrXV 24814 . C T 2127 filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=109.4228;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=0;QD=15.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2160,231,0 chrXV 24824 . T C 1708 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=109.7303;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=14.12;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1741,198,0 chrXV 24827 . G A 1821 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=109.7303;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=14.69;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1854,198,0 chrXV 24859 . C G 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=66.5416;MLEAC=2;MLEAF=1.00;MQ=24.97;MQ0=0;QD=0.85;SB=-5.115e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:12:102,12,0 chrXV 24862 . T C 914 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=84;Dels=0.00;FS=6.111;HaplotypeScore=67.3303;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=0;MQRankSum=0.169;QD=10.88;ReadPosRankSum=1.350;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:3,81:84:99:947,105,0 chrXV 24864 . T C 915 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=68.1189;MLEAC=2;MLEAF=1.00;MQ=25.12;MQ0=0;MQRankSum=0.428;QD=10.76;ReadPosRankSum=1.691;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:948,105,0 chrXV 24878 . A G 581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.346;DP=81;Dels=0.00;FS=20.464;HaplotypeScore=4.9470;MLEAC=2;MLEAF=1.00;MQ=25.05;MQ0=0;MQRankSum=-1.471;QD=7.17;ReadPosRankSum=3.346;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:4,77:81:72:614,72,0 chrXV 24895 . G A 137.13 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=20.4979;MLEAC=2;MLEAF=1.00;MQ=24.84;MQ0=0;QD=1.93;SB=-2.851e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:18:170,18,0 chrXV 24943 . T C 78.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.172;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=69.2113;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;MQRankSum=-0.609;QD=0.99;ReadPosRankSum=-0.016;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:2,77:79:12:111,12,0 chrXV 24945 . T C 167.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.425;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.4867;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;MQRankSum=0.855;QD=2.11;ReadPosRankSum=-1.732;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:1,78:79:24:200,24,0 chrXV 24949 . T C 180.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.342;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.1781;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;MQRankSum=-0.045;QD=2.14;ReadPosRankSum=-0.134;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:2,82:84:24:213,24,0 chrXV 24972 . G A 283 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.647;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.856;QD=3.41;ReadPosRankSum=-1.106;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:1,82:83:36:316,36,0 chrXV 24977 . T C 308 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.262;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.877;QD=3.80;ReadPosRankSum=-1.304;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:1,80:81:36:341,36,0 chrXV 24978 . G A 364 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.706;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.150;QD=4.49;ReadPosRankSum=-0.663;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:1,80:81:45:397,45,0 chrXV 24981 . A T 375 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.46;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:45:408,45,0 chrXV 24991 . C T 393 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.202;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=73.4319;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.202;QD=4.97;ReadPosRankSum=0.733;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:2,77:79:45:426,45,0 chrXV 24992 . C T 393 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.858;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=73.4319;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.172;QD=4.97;ReadPosRankSum=0.921;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:2,77:79:45:426,45,0 chrXV 25001 . T C 399 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.426;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.623;QD=4.48;ReadPosRankSum=0.291;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:2,87:89:48:432,48,0 chrXV 25012 . C T 332 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.613;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=2;MQRankSum=-1.306;QD=4.96;ReadPosRankSum=-0.453;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,66:67:39:365,39,0 chrXV 25013 . G A 317 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=2;MQRankSum=0.560;QD=4.73;ReadPosRankSum=-0.613;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,66:67:39:350,39,0 chrXV 25015 . A G 320 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7563;MLEAC=2;MLEAF=1.00;MQ=29.18;MQ0=2;QD=4.71;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,67:68:39:353,39,0 chrXV 25024 . A G 397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.693;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.6695;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=2;MQRankSum=1.213;QD=4.78;ReadPosRankSum=-1.516;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,81:83:48:430,48,0 chrXV 25128 . A G 3309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.930;DP=158;Dels=0.00;FS=5.350;HaplotypeScore=7.4541;MLEAC=2;MLEAF=1.00;MQ=41.01;MQ0=0;MQRankSum=1.866;QD=20.94;ReadPosRankSum=1.455;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:3,154:158:99:3309,341,0 chrXV 25176 . T C 3681.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.0756;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=0;QD=21.91;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3681,405,0 chrXV 25224 . T C 3747.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.3992;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;MQRankSum=0.138;QD=22.99;ReadPosRankSum=1.690;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3747,411,0 chrXV 25298 . C T 3334.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.0610;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=24.34;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3334,360,0 chrXV 25318 . A G 2731 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=21.50;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2764,312,0 chrXV 25319 . T A 2881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=3.044;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;MQRankSum=1.357;QD=22.51;ReadPosRankSum=2.391;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2914,312,0 chrXV 25733 . T A 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.799;DP=99;Dels=0.00;FS=72.475;HaplotypeScore=8.1996;MLEAC=1;MLEAF=0.500;MQ=10.31;MQ0=66;MQRankSum=-3.577;QD=0.23;ReadPosRankSum=-0.178;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:74,25:99:53:53,0,62 chrXV 25746 . T C 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264;DP=129;Dels=0.00;FS=70.112;HaplotypeScore=20.3389;MLEAC=1;MLEAF=0.500;MQ=10.25;MQ0=78;MQRankSum=-2.690;QD=0.36;ReadPosRankSum=1.307;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:70,59:129:35:76,0,35 chrXV 25809 . C A 1469 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.7040;MLEAC=2;MLEAF=1.00;MQ=15.17;MQ0=55;MQRankSum=0.078;QD=7.77;ReadPosRankSum=-0.931;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:21,168:189:99:1502,168,0 chrXV 25863 . A G 204.01 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.46;MQ0=43;QD=3.29;SB=-2.368e-02 GT:AD:DP:GQ:PL 1/1:0,62:62:27:237,27,0 chrXV 25917 . A T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.64;MQ0=22;QD=0.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,18:24:6:55,6,0 chrXV 26128 . C T 536 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.40;MQ0=14;QD=9.57;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:0,53:56:63:569,63,0 chrXV 26132 . T C 183.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.37;MQ0=11;QD=4.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:38:24:216,24,0 chrXV 26133 . T A 187.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.73;MQ0=8;QD=6.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:24:220,24,0 chrXV 26238 . C T 3315.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.871;DP=324;Dels=0.00;FS=83.160;HaplotypeScore=2.6812;MLEAC=2;MLEAF=1.00;MQ=20.14;MQ0=57;MQRankSum=-1.497;QD=10.23;ReadPosRankSum=2.091;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:37,287:324:99:3315,290,0 chrXV 26343 . G A 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;DP=117;Dels=0.00;FS=102.854;HaplotypeScore=4.8465;MLEAC=1;MLEAF=0.500;MQ=14.64;MQ0=68;MQRankSum=1.081;QD=0.32;ReadPosRankSum=-5.465;SB=-1.366e-03 GT:AD:DP:GQ:PL 0/1:81,36:117:68:68,0,618 chrXV 26392 . G A 172.03 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.82;MQ0=120;QD=1.33;SB=-5.291e+01 GT:AD:DP:GQ:PL 1/1:39,90:129:24:205,24,0 chrXV 27515 . A G 4370.01 filter AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.04;MQ0=7;QD=24.83;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4370,483,0 chrXV 27705 . T C 1292.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;DP=167;Dels=0.00;FS=288.907;HaplotypeScore=14.1850;MLEAC=1;MLEAF=0.500;MQ=21.81;MQ0=17;MQRankSum=-2.768;QD=7.74;ReadPosRankSum=1.253;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:37,129:167:99:1322,0,336 chrXV 28168 . T C 1255 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=4;QD=14.94;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1288,147,0 chrXV 28171 . T G 199.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=85;Dels=0.00;FS=2.433;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=26.70;MQ0=4;MQRankSum=3.707;QD=2.34;ReadPosRankSum=-0.871;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,23:85:99:229,0,784 chrXV 28251 . T C 1471 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=29;QD=15.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1504,165,0 chrXV 28642 . C T 2808 filter AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=10;QD=25.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2841,306,0 chrXV 29079 . G A 2337.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.495;DP=297;Dels=0.00;FS=8.947;HaplotypeScore=20.8850;MLEAC=1;MLEAF=0.500;MQ=42.87;MQ0=19;MQRankSum=-0.256;QD=7.87;ReadPosRankSum=-0.618;SB=-7.580e+02 GT:AD:DP:GQ:PL 0/1:159,138:297:99:2367,0,2520 chrXV 29144 . A G 4371.01 filter AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.3089;MLEAC=2;MLEAF=1.00;MQ=28.96;MQ0=0;QD=21.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4371,486,0 chrXV 30683 . T C 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.734;QD=1.23;ReadPosRankSum=1.569;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,20:21:6:57,6,0 chrXV 30688 . T A 57.97 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.76;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:9:90,9,0 chrXV 30690 . C T 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.38;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:9:82,9,0 chrXV 30691 . C T 53.97 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.57;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:9:86,9,0 chrXV 30695 . G A 53.97 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.93;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:9:86,9,0 chrXV 30699 . A G 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.82;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:9:83,9,0 chrXV 30700 . T C 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.255;QD=1.65;ReadPosRankSum=1.614;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,28:29:9:80,9,0 chrXV 30707 . A G 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=2.24;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,31:31:12:102,12,0 chrXV 30716 . G A 78.51 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;QD=2.01;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,38:39:12:111,12,0 chrXV 30722 . C G 194.01 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=3.88;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,47:50:27:227,27,0 chrXV 30958 . A T 482.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;DP=210;Dels=0.00;FS=123.799;HaplotypeScore=12.2795;MLEAC=1;MLEAF=0.500;MQ=41.51;MQ0=1;MQRankSum=6.556;QD=2.30;ReadPosRankSum=-6.331;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:160,50:210:99:512,0,3159 chrXV 30969 . A G 2230.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.798;DP=192;Dels=0.00;FS=138.335;HaplotypeScore=7.4246;MLEAC=1;MLEAF=0.500;MQ=42.97;MQ0=1;MQRankSum=-5.692;QD=11.61;ReadPosRankSum=5.346;SB=-8.420e+02 GT:AD:DP:GQ:PL 0/1:69,122:192:99:2260,0,944 chrXV 30971 . T G 2108.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.866;DP=192;Dels=0.00;FS=124.440;HaplotypeScore=9.9753;MLEAC=1;MLEAF=0.500;MQ=43.12;MQ0=1;MQRankSum=-5.941;QD=10.98;ReadPosRankSum=4.334;SB=-8.270e+02 GT:AD:DP:GQ:PL 0/1:72,120:192:99:2138,0,993 chrXV 30986 . T A 1505.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.635;DP=189;Dels=0.00;FS=56.859;HaplotypeScore=5.6899;MLEAC=1;MLEAF=0.500;MQ=43.77;MQ0=1;MQRankSum=-6.219;QD=7.96;ReadPosRankSum=-2.134;SB=-8.120e+02 GT:AD:DP:GQ:PL 0/1:95,94:189:99:1535,0,1411 chrXV 30997 . A T 3151 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=1;QD=19.33;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3184,354,0 chrXV 31025 . T A 1668.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;DP=125;Dels=0.00;FS=2.495;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=49.17;MQ0=4;MQRankSum=0.747;QD=13.34;ReadPosRankSum=6.287;SB=-4.630e+02 GT:AD:DP:GQ:PL 0/1:28,97:125:99:1698,0,155 chrXV 31049 . G T 85.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.579;DP=120;Dels=0.00;FS=16.444;HaplotypeScore=25.9107;MLEAC=1;MLEAF=0.500;MQ=50.49;MQ0=2;MQRankSum=3.919;QD=0.71;ReadPosRankSum=-2.566;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,31:120:99:115,0,1361 chrXV 31064 . A T 141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.948;DP=138;Dels=0.00;FS=80.965;HaplotypeScore=10.4992;MLEAC=1;MLEAF=0.500;MQ=50.94;MQ0=2;MQRankSum=-4.261;QD=1.02;ReadPosRankSum=-4.282;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,32:138:99:171,0,1757 chrXV 31075 . A T 579.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.868;DP=136;Dels=0.00;FS=7.379;HaplotypeScore=4.0662;MLEAC=1;MLEAF=0.500;MQ=51.50;MQ0=2;MQRankSum=-1.802;QD=4.26;ReadPosRankSum=4.523;SB=-1.460e+02 GT:AD:DP:GQ:PL 0/1:91,45:136:99:609,0,1188 chrXV 31086 . G A 525.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.850;DP=149;Dels=0.00;FS=4.412;HaplotypeScore=1.6545;MLEAC=1;MLEAF=0.500;MQ=49.51;MQ0=1;MQRankSum=-0.324;QD=3.52;ReadPosRankSum=5.960;SB=-7.501e+01 GT:AD:DP:GQ:PL 0/1:112,37:149:99:555,0,1485 chrXV 31088 . G T 493.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.522;DP=152;Dels=0.00;FS=4.527;HaplotypeScore=1.6545;MLEAC=1;MLEAF=0.500;MQ=49.15;MQ0=1;MQRankSum=-0.980;QD=3.24;ReadPosRankSum=5.173;SB=-7.501e+01 GT:AD:DP:GQ:PL 0/1:115,37:152:99:523,0,1506 chrXV 31103 . A T 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.168;DP=172;Dels=0.00;FS=77.584;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=1;MQRankSum=4.460;QD=15.41;ReadPosRankSum=-2.867;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:10,162:172:99:2684,188,0 chrXV 31160 . T C 1313 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.251;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.1137;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;MQRankSum=1.700;QD=11.94;ReadPosRankSum=1.059;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,107:110:99:1346,170,0 chrXV 31163 . T C 1312 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.528;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.1998;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;MQRankSum=1.698;QD=12.74;ReadPosRankSum=0.883;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:1345,170,0 chrXV 31169 . G T 1229 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.119;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.1587;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;MQRankSum=2.397;QD=13.22;ReadPosRankSum=-0.013;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1262,156,0 chrXV 31171 . A C 1220 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.2429;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;MQRankSum=-1.033;QD=13.12;ReadPosRankSum=2.925;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,90:93:99:1253,155,0 chrXV 31178 . T C 921 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.231;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.17;MQ0=0;MQRankSum=2.388;QD=11.66;ReadPosRankSum=-2.419;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,77:79:99:954,122,0 chrXV 31386 . G A 4858.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=25.04;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4858,508,0 chrXV 31473 . G T 5225.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=16.5962;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=23.54;SB=-2.794e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5225,567,0 chrXV 31580 . T A 4626.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.03;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4626,501,0 chrXV 31790 . T A 3479.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=25.96;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3479,363,0 chrXV 31863 . G T 2930 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2963,312,0 chrXV 31939 . C G 4017.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=23.49;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,166:171:99:4017,450,0 chrXV 32216 . T C 3163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=3.701;HaplotypeScore=5.4235;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=0.408;QD=23.26;ReadPosRankSum=1.656;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3196,345,0 chrXV 32330 . G A 3850.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;QD=21.88;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3850,403,0 chrXV 32359 . C T 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=148;Dels=0.00;FS=7.051;HaplotypeScore=131.3107;MLEAC=2;MLEAF=1.00;MQ=36.56;MQ0=0;MQRankSum=-1.735;QD=18.80;ReadPosRankSum=2.416;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2815,297,0 chrXV 32374 . A G 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=131;Dels=0.00;FS=2.978;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=33.39;MQ0=0;MQRankSum=-2.279;QD=14.99;ReadPosRankSum=2.412;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:1997,225,0 chrXV 32379 . C T 1928 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=32.24;MQ0=0;QD=15.42;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1961,210,0 chrXV 32395 . A G 1620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=34.21;MQ0=0;MQRankSum=1.192;QD=14.86;ReadPosRankSum=1.700;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1653,183,0 chrXV 32406 . G C 1730 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=38.73;MQ0=0;QD=14.54;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:1763,195,0 chrXV 32552 . T C 4090.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;MQRankSum=1.108;QD=25.40;ReadPosRankSum=1.668;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:4090,450,0 chrXV 32639 . T C 2845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=126;Dels=0.00;FS=7.501;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=-1.702;QD=22.58;ReadPosRankSum=2.391;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2878,321,0 chrXV 32791 . A G 1828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=116;Dels=0.00;FS=7.903;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;MQRankSum=-2.365;QD=15.76;ReadPosRankSum=2.407;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:1861,204,0 chrXV 32803 . T C 1664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.76;MQ0=0;MQRankSum=1.092;QD=13.87;ReadPosRankSum=1.674;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:1697,192,0 chrXV 32809 . C T 1693 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=102.0960;MLEAC=2;MLEAF=1.00;MQ=34.10;MQ0=0;QD=14.11;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1726,186,0 chrXV 32865 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=21.77;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2863,303,0 chrXV 35166 . C T 6702.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=26.8876;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.57;SB=-3.267e+03 GT:AD:DP:GQ:PL 1/1:0,294:297:99:6702,726,0 chrXV 35297 . A G 4339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.379;DP=194;Dels=0.00;FS=5.250;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=1.480;QD=22.37;ReadPosRankSum=3.379;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:4,190:194:99:4339,486,0 chrXV 35482 . T G 3172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=143;Dels=0.00;FS=4.137;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-1.633;QD=22.18;ReadPosRankSum=1.707;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:1,139:143:99:3205,354,0 chrXV 35486 . A T 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.262;QD=23.18;ReadPosRankSum=1.706;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3093,333,0 chrXV 35855 . T C 1681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.962;QD=23.35;ReadPosRankSum=1.636;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1714,192,0 chrXV 36295 . A T 1883 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.92;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1916,204,0 chrXV 36328 . A G 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=108;Dels=0.00;FS=6.914;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-1.721;QD=21.88;ReadPosRankSum=2.313;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2396,273,0 chrXV 36550 . C G 2620 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.13;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2653,291,0 chrXV 36551 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.03;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2787,297,0 chrXV 36648 . G C 3679.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3679,414,0 chrXV 37205 . T C 4724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=204;Dels=0.00;FS=5.707;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.985;QD=23.16;ReadPosRankSum=2.847;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:3,200:204:99:4724,513,0 chrXV 37274 . A C 6487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.273;DP=281;Dels=0.00;FS=17.931;HaplotypeScore=15.6404;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.266;QD=23.09;ReadPosRankSum=3.286;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:4,274:281:99:6487,706,0 chrXV 37969 . A G 3696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=0.972;QD=22.27;ReadPosRankSum=1.711;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3696,405,0 chrXV 38001 . C G 3750.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.1239;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=22.06;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3750,411,0 chrXV 38175 . T C 2935 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.02;FS=0.000;HaplotypeScore=3.7936;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.58;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2968,324,0 chrXV 38177 . A C 2863 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.03;FS=0.000;HaplotypeScore=4.6877;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=18.35;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2896,327,0 chrXV 38741 . A C 2519 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2552,279,0 chrXV 38791 . A C 2865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=116;Dels=0.00;FS=3.655;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.299;QD=24.70;ReadPosRankSum=1.702;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2898,321,0 chrXV 38868 . C G 2033 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.34;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2066,231,0 chrXV 39686 . A G 3743.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=158;Dels=0.00;FS=3.038;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.399;QD=23.69;ReadPosRankSum=2.387;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3743,411,0 chrXV 40513 . G A 3539.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=24.58;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3539,384,0 chrXV 40570 . A G 2836 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.4116;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.55;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2869,318,0 chrXV 40589 . T C 2467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=4.472;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.074;QD=17.62;ReadPosRankSum=1.633;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2500,273,0 chrXV 40593 . A G 2536 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.38;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2569,279,0 chrXV 40697 . A G 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.064;QD=22.68;ReadPosRankSum=1.671;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2618,288,0 chrXV 41086 . T C 3527.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.83;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3527,387,0 chrXV 42926 . C T 3756.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=23.92;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3756,399,0 chrXV 43092 . A G 1144 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=11.44;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1177,129,0 chrXV 43143 . A G 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;MQRankSum=-1.693;QD=20.52;ReadPosRankSum=1.693;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1859,207,0 chrXV 43170 . T C 1862 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.08;MQ0=0;QD=20.24;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1895,210,0 chrXV 43176 . A C 1793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;MQRankSum=-1.453;QD=20.61;ReadPosRankSum=1.692;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1826,198,0 chrXV 43187 . A G 1635 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.91;MQ0=0;QD=17.77;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1668,189,0 chrXV 43188 . A G 1683 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=0;QD=17.53;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1716,195,0 chrXV 43223 . G A 2484 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;QD=21.79;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2517,273,0 chrXV 43303 . T C 1012 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.55;MQ0=0;MQRankSum=-1.393;QD=10.88;ReadPosRankSum=1.694;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1045,120,0 chrXV 43309 . C T 901 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.26;MQ0=0;QD=10.60;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:934,105,0 chrXV 43312 . G A 762 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=0;QD=9.77;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:93:795,93,0 chrXV 43313 . A G 764 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=0;QD=9.79;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:93:797,93,0 chrXV 43318 . A G 776 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.28;MQ0=0;QD=9.70;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:93:809,93,0 chrXV 43337 . C T 562 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;QD=7.49;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:66:595,66,0 chrXV 43346 . T C 523 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.85;MQ0=0;QD=6.88;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:63:556,63,0 chrXV 43351 . C T 506 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=7.03;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:63:539,63,0 chrXV 43360 . A G 481 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=0;QD=7.18;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:60:514,60,0 chrXV 43366 . A G 337 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=5.721;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;MQRankSum=-0.990;QD=6.02;ReadPosRankSum=1.670;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:45:370,45,0 chrXV 43369 . G C 353 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.16;MQ0=0;QD=6.09;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:45:386,45,0 chrXV 43376 . T C 379 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=29.16;MQ0=0;QD=6.42;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:48:412,48,0 chrXV 43415 . A G 1224 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=35.97;MQ0=0;QD=16.11;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,72:76:99:1257,141,0 chrXV 43444 . T C 1566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=3.178;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.22;MQ0=0;MQRankSum=0.022;QD=19.82;ReadPosRankSum=1.644;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1599,177,0 chrXV 43479 . A T 1982 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.64;MQ0=0;QD=20.65;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2015,216,0 chrXV 43495 . G T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=0;QD=0.25;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:6:57,6,0 chrXV 43511 . A G 2226 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;QD=18.40;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2259,252,0 chrXV 43599 . C T 2055 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=41.30;MQ0=0;QD=18.19;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2088,228,0 chrXV 43623 . T C 1436 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.17;MQ0=0;QD=13.55;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1469,171,0 chrXV 43625 . T C 1440 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.374;DP=106;Dels=0.00;FS=2.347;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.02;MQ0=0;MQRankSum=1.484;QD=13.58;ReadPosRankSum=3.357;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:4,102:106:99:1473,168,0 chrXV 43628 . C G 1306 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.54;MQ0=0;QD=11.98;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1339,153,0 chrXV 43648 . G A 1044 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;QD=10.44;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1077,123,0 chrXV 43650 . A T 1095 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;QD=10.95;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1128,123,0 chrXV 43663 . A G 1175 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=9.79;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1208,141,0 chrXV 43666 . C A 1228 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.75;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:1261,141,0 chrXV 43688 . G T 1872 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.22;MQ0=0;QD=12.32;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:1905,210,0 chrXV 43705 . C T 2233 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;QD=13.14;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2266,249,0 chrXV 43753 . G A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=20.09;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3496,384,0 chrXV 43786 . C T 3400.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=22.97;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3400,378,0 chrXV 43834 . C T 2782 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=38.17;MQ0=0;QD=21.57;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2815,315,0 chrXV 43840 . A C 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=0;MQRankSum=-1.380;QD=20.37;ReadPosRankSum=1.705;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:2681,309,0 chrXV 43853 . G A 2829 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.89;MQ0=0;QD=20.50;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2862,318,0 chrXV 43915 . T G 3075 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=20.64;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3108,345,0 chrXV 44078 . G A 2130 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8177;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=21.52;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2163,243,0 chrXV 44092 . T C 1950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=3.150;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;MQRankSum=-1.586;QD=20.53;ReadPosRankSum=-0.383;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1983,222,0 chrXV 44093 . A C 1948 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=44.63;MQ0=0;QD=20.72;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1981,225,0 chrXV 44113 . G A 1775 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=15.99;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1808,198,0 chrXV 44149 . T A 1896 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=15.67;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1929,207,0 chrXV 44164 . C T 2000 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;QD=15.87;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2033,210,0 chrXV 44176 . A G 1914 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=15.07;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:1947,213,0 chrXV 44181 . A G 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;MQRankSum=1.512;QD=14.70;ReadPosRankSum=1.705;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:1885,207,0 chrXV 44249 . T G 2565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=126;Dels=0.00;FS=2.581;HaplotypeScore=15.1857;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.322;QD=20.36;ReadPosRankSum=2.372;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2598,297,0 chrXV 44353 . C T 3455.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=19.63;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3455,378,0 chrXV 44358 . G A 3535.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=19.64;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3535,375,0 chrXV 44491 . G A 4989.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.4514;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=25.45;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4989,537,0 chrXV 44546 . G A 3741.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=23.24;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3741,405,0 chrXV 44548 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=22.45;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3547,387,0 chrXV 44801 . C T 1674 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.3613;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.25;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1707,186,0 chrXV 45976 . C T 2523 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=22.73;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2556,273,0 chrXV 46201 . T A 4559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.407;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=9.4048;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-0.918;QD=18.16;ReadPosRankSum=0.628;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:1,250:251:99:4559,492,0 chrXV 46204 . C T 4408.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=7.1673;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=16.76;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:4408,474,0 chrXV 46903 . G A 4249.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.22;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4249,471,0 chrXV 47230 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=147;Dels=0.00;FS=2.587;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.706;QD=22.26;ReadPosRankSum=2.774;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3272,360,0 chrXV 47329 . C T 5388.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.60;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5388,571,0 chrXV 47652 . A C 5330.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=16.4611;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.39;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:0,235:238:99:5330,585,0 chrXV 47740 . G A 3713.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.35;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3713,396,0 chrXV 47769 . T G 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=4.287;HaplotypeScore=4.2952;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.312;QD=21.27;ReadPosRankSum=1.689;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:3488,381,0 chrXV 47785 . C T 3789.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.53;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3789,408,0 chrXV 48217 . G A 5973.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=14.3864;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.88;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:5973,646,0 chrXV 48311 . C T 4009.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.32;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4009,435,0 chrXV 48326 . A G 3982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=187;Dels=0.00;FS=2.719;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-0.401;QD=21.29;ReadPosRankSum=2.410;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3982,438,0 chrXV 48997 . G A 2544 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=29.0181;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.17;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,106:140:99:2577,276,0 chrXV 49843 . T C 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=181;Dels=0.00;FS=6.704;HaplotypeScore=19.0744;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.967;QD=21.54;ReadPosRankSum=2.340;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:3898,426,0 chrXV 50002 . C T 2566 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=18.07;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2599,276,0 chrXV 50010 . A T 2381 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=133;Dels=0.00;FS=3.013;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;MQRankSum=-0.564;QD=17.90;ReadPosRankSum=2.339;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2414,255,0 chrXV 50012 . C T 2469 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=18.15;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2502,264,0 chrXV 52536 . C A 3524.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3524,372,0 chrXV 53357 . G C 3798.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.74;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3798,414,0 chrXV 53664 . C T 4153.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.1332;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.60;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4153,439,0 chrXV 54185 . A T 4974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=218;Dels=0.00;FS=2.795;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.866;QD=22.82;ReadPosRankSum=2.382;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4974,543,0 chrXV 54318 . T C 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=170;Dels=0.00;FS=6.798;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=-1.452;QD=17.84;ReadPosRankSum=2.247;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3065,339,0 chrXV 54321 . A G 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=0.204;QD=17.53;ReadPosRankSum=1.712;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3013,333,0 chrXV 54339 . T C 2960 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=18.85;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2993,327,0 chrXV 54673 . G A 4487.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=25.64;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4487,475,0 chrXV 54757 . T C 3215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-1.178;QD=21.43;ReadPosRankSum=1.709;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3248,363,0 chrXV 54787 . G A 4574.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.98;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4574,507,0 chrXV 54952 . A C 4713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.786;DP=212;Dels=0.00;FS=10.612;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;MQRankSum=-0.529;QD=22.23;ReadPosRankSum=2.900;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:3,208:212:99:4713,510,0 chrXV 54974 . G A 4686.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=22.75;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4686,496,0 chrXV 54997 . C T 4128.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=19.94;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4128,450,0 chrXV 55182 . G A 3731.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=21.57;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3731,399,0 chrXV 55283 . T A 1602 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=19.07;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1635,174,0 chrXV 55310 . C T 801 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.19;MQ0=0;QD=11.12;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:87:834,87,0 chrXV 55311 . C T 796 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.66;MQ0=0;QD=11.21;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:87:829,87,0 chrXV 55323 . T C 660 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;QD=7.67;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:78:693,78,0 chrXV 55328 . C T 664 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.84;MQ0=0;QD=7.63;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:75:697,75,0 chrXV 55330 . T C 723 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=93;Dels=0.00;FS=2.748;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=35.61;MQ0=0;MQRankSum=-2.158;QD=7.77;ReadPosRankSum=2.370;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:84:756,84,0 chrXV 55369 . A C 1892 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=12.61;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:1925,213,0 chrXV 55373 . G C 1967 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;QD=12.22;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2000,222,0 chrXV 55488 . T C 3201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-0.773;QD=21.20;ReadPosRankSum=2.417;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3234,357,0 chrXV 55506 . G A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.8534;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=21.90;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3372,357,0 chrXV 55548 . A C 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;MQRankSum=0.329;QD=19.74;ReadPosRankSum=1.891;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:2,196:198:99:3908,438,0 chrXV 55563 . T C 4081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;MQRankSum=-0.617;QD=19.91;ReadPosRankSum=1.715;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4081,447,0 chrXV 55709 . G A 5035.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=15.9309;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.98;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:5035,543,0 chrXV 55851 . G A 3574.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.67;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3574,387,0 chrXV 56311 . C T 2124 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2157,234,0 chrXV 56429 . C A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.37;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3425,363,0 chrXV 56604 . G A 3809.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.96;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3809,414,0 chrXV 56637 . A C 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=143;Dels=0.00;FS=5.511;HaplotypeScore=18.3103;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.264;QD=22.07;ReadPosRankSum=2.950;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:3,138:143:99:3189,351,0 chrXV 57629 . T C 3858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.7767;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.072;QD=22.96;ReadPosRankSum=1.670;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3858,426,0 chrXV 57959 . T C 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=196;Dels=0.00;FS=3.433;HaplotypeScore=13.7638;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.554;QD=21.62;ReadPosRankSum=1.696;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:4237,462,0 chrXV 58408 . C T 5925.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=14.3462;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.18;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:0,243:245:99:5925,631,0 chrXV 58673 . A G 2993 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.78;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3026,333,0 chrXV 58758 . C A 3630.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=17.8123;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3630,399,0 chrXV 59127 . T G 4033.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.53;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4033,450,0 chrXV 59265 . T C 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=142;Dels=0.00;FS=7.238;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-0.407;QD=24.19;ReadPosRankSum=2.415;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3435,375,0 chrXV 59289 . G A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.94;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3376,357,0 chrXV 59664 . C T 3466.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3466,372,0 chrXV 59776 . C A 2879 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.81;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2912,309,0 chrXV 59823 . G A 3420.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=24.08;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3420,360,0 chrXV 60030 . A G 2847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=-1.261;QD=22.60;ReadPosRankSum=1.649;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2880,318,0 chrXV 60110 . T C 1662 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.31;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1695,186,0 chrXV 60143 . T C 1890 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7198;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.72;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1923,213,0 chrXV 60195 . C G 794 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:93:827,93,0 chrXV 60240 . C T 371 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=9.76;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:42:404,42,0 chrXV 61079 . C A 3797.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.44;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3797,414,0 chrXV 61694 . A G 4772.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.51;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4772,537,0 chrXV 61748 . C T 5856.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.10;SB=-3.236e+03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:5856,625,0 chrXV 61766 . T C 5378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=256;Dels=0.00;FS=6.176;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.140;QD=21.01;ReadPosRankSum=2.430;SB=-3.278e+03 GT:AD:DP:GQ:PL 1/1:2,252:256:99:5378,600,0 chrXV 62062 . G A 6583.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.52;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:0,255:258:99:6583,697,0 chrXV 62108 . A G 6378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=285;Dels=0.00;FS=4.095;HaplotypeScore=16.7675;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.343;QD=22.38;ReadPosRankSum=1.720;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:1,284:285:99:6378,708,0 chrXV 62685 . G A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=24.39;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3853,405,0 chrXV 62744 . G A 4247.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=24.69;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4247,451,0 chrXV 62855 . G C 3325.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.47;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3325,369,0 chrXV 62914 . T C 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=3.450;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-0.372;QD=20.67;ReadPosRankSum=1.706;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2844,318,0 chrXV 62936 . C T 2597 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=20.29;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2630,276,0 chrXV 62939 . C A 2343 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=18.60;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2376,261,0 chrXV 63109 . T C 3044 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.85;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3077,345,0 chrXV 63239 . C G 3661.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.41;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3661,408,0 chrXV 63524 . C T 3862.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.84;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3862,400,0 chrXV 63551 . A G 3366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=162;Dels=0.00;FS=6.030;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.845;QD=20.78;ReadPosRankSum=2.919;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:3366,375,0 chrXV 63965 . T A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=14.3864;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.03;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3408,363,0 chrXV 63998 . A G 2945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=140;Dels=0.00;FS=9.669;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.335;QD=21.04;ReadPosRankSum=2.379;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:2,137:140:99:2978,342,0 chrXV 64043 . T G 2818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=2.702;HaplotypeScore=8.8881;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.028;QD=21.03;ReadPosRankSum=2.303;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2851,321,0 chrXV 64300 . G A 3000 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=23.81;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3033,324,0 chrXV 64397 . A G 2954 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2987,327,0 chrXV 64481 . G A 3746.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.17;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3746,411,0 chrXV 64577 . A G 4829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=5.084;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.732;QD=25.82;ReadPosRankSum=1.714;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4829,531,0 chrXV 65800 . G A 4351.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.7681;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.17;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4351,463,0 chrXV 66022 . A T 6306.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.35;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,259:259:99:6306,679,0 chrXV 66542 . T C 3713.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.95;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3713,405,0 chrXV 66616 . A G 4150.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.58;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4150,459,0 chrXV 67051 . G C 3650.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.62;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3650,405,0 chrXV 67090 . A T 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.9151;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=-0.693;QD=20.31;ReadPosRankSum=1.712;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3513,390,0 chrXV 67130 . C G 3015 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=0;QD=19.84;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3048,339,0 chrXV 67143 . T G 2726 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.21;MQ0=0;QD=20.19;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2759,309,0 chrXV 67145 . G A 2753 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.23;MQ0=0;QD=21.02;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2786,300,0 chrXV 67149 . C T 2496 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.84;MQ0=0;QD=19.65;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2529,267,0 chrXV 67175 . C G 2047 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;QD=17.50;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2080,231,0 chrXV 67209 . G A 1740 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=17.06;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1773,192,0 chrXV 67210 . G A 1760 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=16.92;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1793,192,0 chrXV 67223 . A G 2012 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=17.96;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2045,228,0 chrXV 67278 . G A 2397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.834;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5151;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=-0.064;QD=21.99;ReadPosRankSum=0.064;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2430,237,0 chrXV 67526 . T C 1752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=84;Dels=0.00;FS=7.678;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-1.130;QD=20.86;ReadPosRankSum=2.362;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1785,201,0 chrXV 67702 . A G 3175 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.69;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3208,366,0 chrXV 67774 . G A 2668 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=22.42;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2701,291,0 chrXV 67780 . T C 2317 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.69;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2350,267,0 chrXV 67831 . A G 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=135;Dels=0.00;FS=3.209;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=1.086;QD=19.94;ReadPosRankSum=1.655;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2725,303,0 chrXV 68407 . T C 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=155;Dels=0.00;FS=6.101;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.006;QD=23.81;ReadPosRankSum=2.955;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3691,405,0 chrXV 68535 . A G 4093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.294;QD=23.52;ReadPosRankSum=1.692;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4093,450,0 chrXV 68602 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.84;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2819,300,0 chrXV 68866 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.65;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2955,324,0 chrXV 68877 . A T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=24.89;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3311,351,0 chrXV 69357 . A G 4616.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.5005;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.74;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4616,504,0 chrXV 69484 . C G 4935.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.8273;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-2.617e+03 GT:AD:DP:GQ:PL 1/1:0,220:224:99:4935,549,0 chrXV 70221 . T A 4116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.3196;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.128;QD=25.41;ReadPosRankSum=1.689;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4116,441,0 chrXV 70322 . A G 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.960;QD=22.01;ReadPosRankSum=1.694;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4072,459,0 chrXV 70812 . T C 3795.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=170;Dels=0.00;FS=6.859;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;MQRankSum=0.298;QD=22.32;ReadPosRankSum=2.421;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3795,420,0 chrXV 71024 . T C 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=149;Dels=0.00;FS=3.442;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.304;QD=22.99;ReadPosRankSum=1.709;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3425,372,0 chrXV 71578 . C T 3565.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.5432;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.76;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3565,378,0 chrXV 71821 . C T 4392.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.7270;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.24;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4392,468,0 chrXV 71930 . C T 4101.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.63;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:4101,432,0 chrXV 72013 . T C 3895.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.8578;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.26;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3895,435,0 chrXV 72741 . A C 3329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=148;Dels=0.00;FS=3.037;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.324;QD=22.49;ReadPosRankSum=2.383;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3329,372,0 chrXV 73173 . A G 5103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=218;Dels=0.00;FS=8.702;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.413;QD=23.41;ReadPosRankSum=2.336;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:2,215:218:99:5103,555,0 chrXV 73327 . T C 4895.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=7.3714;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.83;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,231:235:99:4895,555,0 chrXV 73340 . G A 4559.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.63;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4559,478,0 chrXV 73503 . T A 5396.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.85;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5396,562,0 chrXV 74126 . C T 2796 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.11;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2829,303,0 chrXV 74181 . A G 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=137;Dels=0.00;FS=2.929;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.063;QD=23.43;ReadPosRankSum=2.395;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3243,363,0 chrXV 74338 . G T 5154.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=20.6997;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.31;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,207:212:99:5154,555,0 chrXV 74413 . C T 6659.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=15.3954;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.75;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,268:269:99:6659,718,0 chrXV 74576 . T C 6645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=315;Dels=0.00;FS=11.440;HaplotypeScore=24.5783;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.244;QD=21.10;ReadPosRankSum=2.925;SB=-3.323e+03 GT:AD:DP:GQ:PL 1/1:3,307:315:99:6645,744,0 chrXV 74698 . G A 7258.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=16.5309;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.11;SB=-3.877e+03 GT:AD:DP:GQ:PL 1/1:0,301:301:99:7258,766,0 chrXV 74777 . C T 6491.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=18.3330;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.52;SB=-3.589e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:6491,688,0 chrXV 74821 . T C 6232.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=18.0737;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.79;SB=-3.349e+03 GT:AD:DP:GQ:PL 1/1:0,284:286:99:6232,699,0 chrXV 75126 . T C 5118.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=229;Dels=0.00;FS=3.013;HaplotypeScore=12.2884;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.494;QD=22.35;ReadPosRankSum=2.406;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:2,224:229:99:5118,564,0 chrXV 75161 . T C 4633.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.40;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4633,510,0 chrXV 75243 . T C 5517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=243;Dels=0.00;FS=6.332;HaplotypeScore=17.4384;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.725;QD=22.70;ReadPosRankSum=2.409;SB=-3.048e+03 GT:AD:DP:GQ:PL 1/1:2,240:243:99:5517,606,0 chrXV 75413 . A C 3988.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.99;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3988,438,0 chrXV 75434 . A G 4105.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-1.173;QD=21.95;ReadPosRankSum=1.695;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:4105,450,0 chrXV 75605 . G A 3435.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.90;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3435,372,0 chrXV 75674 . T G 4734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-0.820;QD=22.98;ReadPosRankSum=1.715;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:4734,540,0 chrXV 75941 . G A 5093.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=22.34;SB=-2.978e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5093,546,0 chrXV 75953 . A G 4413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=210;Dels=0.00;FS=3.424;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=0.157;QD=21.01;ReadPosRankSum=1.699;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:4413,480,0 chrXV 75968 . C T 4239.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=4.4324;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=19.53;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4239,462,0 chrXV 76001 . C T 5235.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=17.5216;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.13;SB=-2.664e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5235,553,0 chrXV 76115 . T A 5973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=8.7147;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=1.053;QD=23.42;ReadPosRankSum=1.691;SB=-3.149e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:5973,640,0 chrXV 76139 . A G 5567.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=22.72;SB=-3.099e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5567,615,0 chrXV 76208 . A C 5581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=8.5924;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=1.187;QD=22.41;ReadPosRankSum=1.704;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:1,247:249:99:5581,621,0 chrXV 76371 . G A 2947 SnpCluster AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=18.77;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2980,315,0 chrXV 76376 . G A 2862 SnpCluster AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;QD=17.89;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2895,303,0 chrXV 76379 . G A 2620 SnpCluster AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=15.98;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2653,282,0 chrXV 76391 . T C 2274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=3.485;HaplotypeScore=9.0034;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;MQRankSum=-1.115;QD=13.07;ReadPosRankSum=1.692;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:2307,249,0 chrXV 76748 . G T 2431 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2464,261,0 chrXV 77265 . A G 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=10.4236;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.794;QD=21.85;ReadPosRankSum=1.706;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:3027,333,0 chrXV 77289 . T C 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=3.431;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.373;QD=20.97;ReadPosRankSum=1.705;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2780,312,0 chrXV 77377 . A G 1955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=117;Dels=0.00;FS=3.869;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;MQRankSum=-0.518;QD=16.71;ReadPosRankSum=1.703;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1988,216,0 chrXV 77399 . A G 1843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=3.668;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;MQRankSum=-0.215;QD=15.23;ReadPosRankSum=1.703;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1876,207,0 chrXV 77404 . G A 1998 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=15.73;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2031,216,0 chrXV 77925 . A G 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=192;Dels=0.00;FS=3.339;HaplotypeScore=13.6518;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.570;QD=20.56;ReadPosRankSum=1.696;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:3948,438,0 chrXV 78123 . G C 4210.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.79;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4210,468,0 chrXV 78272 . T G 3063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=3.041;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.513;QD=24.12;ReadPosRankSum=2.333;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:3096,339,0 chrXV 78342 . G T 2833 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.22;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2866,312,0 chrXV 78367 . C T 2357 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.66;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2390,264,0 chrXV 78413 . C T 2258 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.36;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2291,246,0 chrXV 78910 . C T 3555.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.2320;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.54;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3555,390,0 chrXV 79026 . G A 4334.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.94;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4334,465,0 chrXV 79146 . T C 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8137;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=-1.544;QD=21.04;ReadPosRankSum=1.669;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3493,387,0 chrXV 79159 . G A 3759.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.3592;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=22.78;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3759,391,0 chrXV 79199 . C T 3774.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.08;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3774,402,0 chrXV 79278 . G A 3040 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=2.1330;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=14.83;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:3073,330,0 chrXV 79286 . A G 2671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=202;Dels=0.00;FS=12.194;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.15;MQ0=0;MQRankSum=-1.574;QD=13.22;ReadPosRankSum=2.413;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:2704,294,0 chrXV 79297 . C G 2038 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=163.9087;MLEAC=2;MLEAF=1.00;MQ=38.66;MQ0=0;QD=10.45;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:2071,231,0 chrXV 79585 . C T 3357.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.23;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3357,363,0 chrXV 79627 . G A 2764 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.66;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2797,297,0 chrXV 79804 . G A 2728 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.5181;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.73;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2761,294,0 chrXV 79906 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=23.28;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2920,306,0 chrXV 79930 . C T 2438 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=18.90;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2471,276,0 chrXV 79941 . T G 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=142;Dels=0.00;FS=5.553;HaplotypeScore=7.6512;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=-1.291;QD=17.55;ReadPosRankSum=2.880;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:2525,279,0 chrXV 79976 . T C 2626 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=16.41;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2659,291,0 chrXV 79987 . T C 2558 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=15.99;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2591,285,0 chrXV 80008 . A G 2930 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.7180;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=16.94;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:2963,333,0 chrXV 80409 . G A 2657 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=20.76;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2690,285,0 chrXV 80423 . G C 2383 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=19.86;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2416,270,0 chrXV 80449 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=14.98;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1875,201,0 chrXV 80451 . A G 1765 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=14.47;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:1798,201,0 chrXV 80578 . G A 3369.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.9745;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=21.74;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3369,354,0 chrXV 80586 . T C 3036 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;QD=19.97;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3069,339,0 chrXV 80641 . T C 2487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;MQRankSum=-1.401;QD=18.29;ReadPosRankSum=1.707;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2520,288,0 chrXV 80664 . C T 3363.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=21.84;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3363,351,0 chrXV 80741 . G A 4392.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.61;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4392,468,0 chrXV 80920 . T C 5125.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=219;Dels=0.00;FS=3.024;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.627;QD=23.40;ReadPosRankSum=2.427;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:5125,564,0 chrXV 81306 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=21.35;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2189,234,0 chrXV 81355 . T C 820 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;QD=9.43;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:93:853,93,0 chrXV 81364 . G T 611 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.78;MQ0=0;QD=7.64;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:69:644,69,0 chrXV 81387 . T A 322 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=45.4259;MLEAC=2;MLEAF=1.00;MQ=30.57;MQ0=0;QD=5.46;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:39:355,39,0 chrXV 81404 . T C 599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.65;MQ0=0;MQRankSum=-0.028;QD=8.32;ReadPosRankSum=2.903;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:3,69:72:69:632,69,0 chrXV 81409 . T G 750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;MQRankSum=-1.640;QD=10.00;ReadPosRankSum=1.640;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:87:783,87,0 chrXV 81416 . G A 804 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=10.72;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:87:837,87,0 chrXV 81436 . C T 1641 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7247;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=17.09;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1674,177,0 chrXV 81481 . C T 3411.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=22.01;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3411,378,0 chrXV 81733 . C T 4581.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=16.4894;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=22.35;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4581,492,0 chrXV 81796 . T A 7138.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=26.24;SB=-3.018e+03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:7138,748,0 chrXV 81822 . A G 6860.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=288;Dels=0.00;FS=3.751;HaplotypeScore=14.4023;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.308;QD=23.82;ReadPosRankSum=1.708;SB=-3.266e+03 GT:AD:DP:GQ:PL 1/1:1,286:288:99:6860,753,0 chrXV 81934 . T C 5622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.764;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=15.9233;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.500;QD=22.31;ReadPosRankSum=2.292;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:3,249:252:99:5622,609,0 chrXV 82066 . A G 5548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=264;Dels=0.00;FS=5.226;HaplotypeScore=27.6636;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-2.047;QD=21.02;ReadPosRankSum=2.941;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:3,253:264:99:5548,618,0 chrXV 82183 . T C 4873.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=15.5308;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.82;SB=-2.917e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4873,531,0 chrXV 82213 . A G 4899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=232;Dels=0.00;FS=3.489;HaplotypeScore=13.3695;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.708;QD=21.12;ReadPosRankSum=1.717;SB=-2.766e+03 GT:AD:DP:GQ:PL 1/1:1,229:232:99:4899,534,0 chrXV 82279 . C T 5909.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=13.9161;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.62;SB=-2.994e+03 GT:AD:DP:GQ:PL 1/1:0,236:240:99:5909,619,0 chrXV 82378 . G A 4922.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.89;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4922,529,0 chrXV 82666 . T C 4941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.1490;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.493;QD=21.12;ReadPosRankSum=1.613;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:1,231:234:99:4941,558,0 chrXV 82759 . A G 5072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=258;Dels=0.00;FS=2.866;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-0.414;QD=19.66;ReadPosRankSum=2.402;SB=-2.792e+03 GT:AD:DP:GQ:PL 1/1:2,256:258:99:5072,555,0 chrXV 82762 . C G 4666.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=19.28;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,240:242:99:4666,519,0 chrXV 82988 . C T 3936.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.9953;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=24.60;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3936,423,0 chrXV 83069 . T C 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.144;QD=23.67;ReadPosRankSum=1.674;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2873,315,0 chrXV 83321 . G A 2211 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=439.1216;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=19.92;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2244,243,0 chrXV 83622 . T C 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=3.579;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-0.091;QD=21.08;ReadPosRankSum=1.641;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2457,273,0 chrXV 83646 . T A 2763 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=20.47;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2796,306,0 chrXV 83647 . T C 2775 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=20.71;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2808,303,0 chrXV 83714 . A C 2510 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=16.51;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2543,288,0 chrXV 83725 . G A 2478 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.1463;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=16.97;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2511,276,0 chrXV 83863 . T C 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=132;Dels=0.00;FS=5.901;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.962;QD=23.05;ReadPosRankSum=2.900;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:3076,342,0 chrXV 84178 . C T 4773.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=24.11;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4773,502,0 chrXV 84190 . A G 4198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=196;Dels=0.00;FS=3.023;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-2.233;QD=21.42;ReadPosRankSum=2.348;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:2,192:196:99:4198,456,0 chrXV 84226 . G A 3690.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.96;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3690,399,0 chrXV 84370 . A G 4772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=221;Dels=0.00;FS=3.468;HaplotypeScore=7.4593;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=1.134;QD=21.59;ReadPosRankSum=1.716;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:1,219:221:99:4772,531,0 chrXV 84388 . C T 4943.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=22.67;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4943,529,0 chrXV 84463 . C T 3218.91 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.67;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:3252,357,0 chrXV 84490 . C T 3372.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.8836;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.18;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3372,360,0 chrXV 84537 . A G 3601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=0.928;QD=19.79;ReadPosRankSum=1.694;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3601,393,0 chrXV 84553 . G A 3832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.639;DP=189;Dels=0.00;FS=4.026;HaplotypeScore=5.8106;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=1.158;QD=20.28;ReadPosRankSum=-0.195;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3832,403,0 chrXV 84702 . C T 6577.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.54;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:6577,709,0 chrXV 84910 . C T 8099.01 PASS AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=17.9297;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.61;SB=-3.477e+03 GT:AD:DP:GQ:PL 1/1:0,342:343:99:8099,838,0 chrXV 85011 . G C 5844.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.28;SB=-2.767e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5844,645,0 chrXV 85038 . C A 5685.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.09;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5685,595,0 chrXV 85150 . G A 2932 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.2896;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.05;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2965,315,0 chrXV 85161 . T C 2719 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.93;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2752,306,0 chrXV 85305 . C T 1694 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.59;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1727,186,0 chrXV 85524 . A G 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=124;Dels=0.00;FS=16.011;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.130;QD=23.87;ReadPosRankSum=2.878;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:3,121:124:99:2993,327,0 chrXV 85645 . A G 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=165;Dels=0.00;FS=4.851;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.913;QD=23.04;ReadPosRankSum=1.711;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3802,420,0 chrXV 85809 . T C 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=180;Dels=0.00;FS=6.293;HaplotypeScore=11.2426;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.364;QD=24.22;ReadPosRankSum=2.422;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:4359,480,0 chrXV 85960 . G A 4089.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4089,430,0 chrXV 86056 . C A 3189 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.5462;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.44;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3222,354,0 chrXV 87055 . T C 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.209;QD=24.29;ReadPosRankSum=1.702;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2875,312,0 chrXV 87163 . T A 1842 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.74;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1875,198,0 chrXV 87202 . G A 2123 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=24.40;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2156,228,0 chrXV 87286 . A T 1821 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=18.21;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1854,204,0 chrXV 87288 . T G 1745 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.63;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1778,198,0 chrXV 87344 . T C 1948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.407;QD=20.29;ReadPosRankSum=1.696;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1981,222,0 chrXV 88299 . G A 5411.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=20.8737;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.39;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5411,591,0 chrXV 88825 . T C 5147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=227;Dels=0.00;FS=2.565;HaplotypeScore=14.7548;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.169;QD=22.67;ReadPosRankSum=2.898;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:3,223:227:99:5147,567,0 chrXV 89229 . A C 4961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=248;Dels=0.00;FS=3.414;HaplotypeScore=12.5866;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=0.740;QD=20.00;ReadPosRankSum=1.662;SB=-2.999e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:4961,543,0 chrXV 90174 . A C 2262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=140;Dels=0.00;FS=4.106;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.461;QD=16.16;ReadPosRankSum=1.707;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2295,255,0 chrXV 90505 . T A 4106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.887;QD=25.04;ReadPosRankSum=2.419;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:4106,447,0 chrXV 90637 . G A 5125.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:5125,567,0 chrXV 90949 . A G 5042.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.6017;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.61;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5042,552,0 chrXV 90982 . A G 5829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.344;QD=22.68;ReadPosRankSum=1.719;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:5829,639,0 chrXV 91050 . A G 5476.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=235;Dels=0.00;FS=2.605;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-2.016;QD=23.30;ReadPosRankSum=2.407;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:2,230:235:99:5476,594,0 chrXV 91324 . A G 2389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.538;QD=20.42;ReadPosRankSum=1.702;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2422,270,0 chrXV 91909 . G C 1840 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.22;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1873,204,0 chrXV 91952 . T G 1412 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.17;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1445,162,0 chrXV 92161 . G A 2903 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.99;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2936,327,0 chrXV 92621 . C T 2975 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3008,327,0 chrXV 93254 . C A 2922 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=25.19;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2955,312,0 chrXV 93606 . G A 5317.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=13.6128;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.06;SB=-2.793e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5317,562,0 chrXV 93698 . A G 3114 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.90;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3147,354,0 chrXV 93727 . C A 3303.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.47;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3303,348,0 chrXV 94140 . A G 3351.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=22.34;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3351,372,0 chrXV 94445 . A T 3340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.6722;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-0.983;QD=22.12;ReadPosRankSum=1.615;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3340,369,0 chrXV 94540 . C T 3420.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=22.35;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3420,375,0 chrXV 94574 . C A 2359 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9998;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=20.51;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2392,258,0 chrXV 94578 . A G 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.2657;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;MQRankSum=-0.770;QD=19.82;ReadPosRankSum=1.700;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2174,240,0 chrXV 94646 . T A 1003 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.55;MQ0=0;QD=10.56;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1036,111,0 chrXV 94686 . T A 1330 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.9091;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=0;MQRankSum=0.064;QD=12.31;ReadPosRankSum=-0.738;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1363,144,0 chrXV 94688 . A T 1290 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=107;Dels=0.01;FS=9.410;HaplotypeScore=4.9228;MLEAC=2;MLEAF=1.00;MQ=36.41;MQ0=0;MQRankSum=-2.477;QD=12.06;ReadPosRankSum=2.934;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:3,103:106:99:1323,144,0 chrXV 94694 . G A 1294 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9197;MLEAC=2;MLEAF=1.00;MQ=35.77;MQ0=0;QD=11.55;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1327,141,0 chrXV 94697 . G A 1256 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=36.28;MQ0=0;QD=11.52;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1289,138,0 chrXV 94761 . T C 1955 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=18.44;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1988,225,0 chrXV 94782 . T C 2291 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=21.41;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2324,255,0 chrXV 94810 . G A 1606 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=315.0817;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=17.84;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1639,177,0 chrXV 95075 . A G 2804 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=17.42;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2837,315,0 chrXV 95080 . T C 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.775;DP=167;Dels=0.00;FS=2.529;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=-1.140;QD=17.09;ReadPosRankSum=2.958;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:3,162:167:99:2887,315,0 chrXV 96853 . T C 2890 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.89;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2923,324,0 chrXV 96983 . T A 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=-0.500;QD=24.37;ReadPosRankSum=1.706;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3338,351,0 chrXV 97910 . A G 2200 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.78;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2233,252,0 chrXV 98012 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.4558;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.65;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2138,234,0 chrXV 98162 . T G 2187 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.30;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2220,243,0 chrXV 98544 . T A 3104 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.52;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3137,333,0 chrXV 98735 . C T 4088.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.0032;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.08;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4088,438,0 chrXV 98780 . C T 3758.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.50;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3758,408,0 chrXV 98981 . G A 3733.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.19;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3733,408,0 chrXV 99057 . A C 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.784;QD=22.21;ReadPosRankSum=1.670;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3754,417,0 chrXV 99115 . G A 3218.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.15;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3251,345,0 chrXV 99374 . A G 3376.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3376,375,0 chrXV 99663 . G A 4032.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.6209;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4032,441,0 chrXV 100099 . G A 4076.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.1550;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4076,438,0 chrXV 100508 . C A 5062.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5062,558,0 chrXV 100933 . T C 3211.99 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.11;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3245,351,0 chrXV 101400 . A G 2771 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.4287;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.10;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2804,306,0 chrXV 101577 . C A 4019.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.9029;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.51;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4019,426,0 chrXV 102386 . A T 2905 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2938,318,0 chrXV 102500 . T C 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=159;Dels=0.00;FS=3.123;HaplotypeScore=17.8766;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.822;QD=22.05;ReadPosRankSum=1.688;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:1,155:159:99:3506,393,0 chrXV 102671 . A T 3308.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.13;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3308,354,0 chrXV 103578 . C T 4512.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4512,483,0 chrXV 103717 . A G 4342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=189;Dels=0.00;FS=6.091;HaplotypeScore=13.5575;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.990;QD=22.97;ReadPosRankSum=2.344;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:2,185:189:99:4342,477,0 chrXV 103869 . A G 4922.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.66;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4922,537,0 chrXV 103968 . A C 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=3.501;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.294;QD=21.29;ReadPosRankSum=1.710;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3385,381,0 chrXV 104048 . T C 3437.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.9757;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=19.64;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3437,378,0 chrXV 104098 . G A 3557.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.30;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3557,390,0 chrXV 104119 . A G 3826.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=176;Dels=0.00;FS=6.145;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-0.635;QD=21.74;ReadPosRankSum=2.380;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3826,423,0 chrXV 104197 . A T 4099.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=13.5220;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.83;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4099,438,0 chrXV 104229 . G A 4254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.182;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=16.2007;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=-1.440;QD=22.39;ReadPosRankSum=1.422;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4254,438,0 chrXV 104808 . G C 4102.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.42;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4102,450,0 chrXV 105936 . C T 4359.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=20.1238;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.137;QD=22.35;ReadPosRankSum=-0.235;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4359,457,0 chrXV 106156 . C G 3215.99 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.62;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,152:156:99:3249,354,0 chrXV 106251 . A G 3553.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.21;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3553,396,0 chrXV 107138 . T C 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=142;Dels=0.00;FS=2.859;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.201;QD=23.79;ReadPosRankSum=2.275;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:3378,375,0 chrXV 107448 . C T 3898.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.83;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3898,412,0 chrXV 107546 . C T 5671.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5671,610,0 chrXV 107690 . A G 4636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=200;Dels=0.00;FS=2.860;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.350;QD=23.18;ReadPosRankSum=2.351;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:2,198:200:99:4636,510,0 chrXV 108008 . G A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.40;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3276,366,0 chrXV 108303 . C A 4015.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.41;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4015,420,0 chrXV 108534 . C T 4380.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.1835;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.90;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4380,477,0 chrXV 108917 . A G 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=151;Dels=0.00;FS=2.889;HaplotypeScore=10.5115;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.172;QD=21.96;ReadPosRankSum=2.417;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3316,366,0 chrXV 108950 . T A 3767.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3767,405,0 chrXV 109002 . C T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.1897;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.49;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3310,354,0 chrXV 109088 . T C 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.594;DP=120;Dels=0.00;FS=11.635;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-1.189;QD=21.42;ReadPosRankSum=3.767;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:5,113:120:99:2604,288,0 chrXV 109106 . G A 2746 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.27;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2779,294,0 chrXV 109153 . A G 3015 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.8708;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.84;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3048,330,0 chrXV 109424 . C T 5714.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=13.4583;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.04;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5714,627,0 chrXV 110254 . C T 3723.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.42;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3723,402,0 chrXV 110864 . T A 249 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.64;MQ0=0;QD=14.65;SB=-1.492e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:30:282,30,0 chrXV 111054 . G T 104.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;DP=90;Dels=0.00;FS=73.620;HaplotypeScore=4.8766;MLEAC=1;MLEAF=0.500;MQ=33.73;MQ0=0;MQRankSum=0.729;QD=1.16;ReadPosRankSum=-5.628;SB=-6.492e-03 GT:AD:DP:GQ:PL 0/1:76,14:90:99:134,0,99 chrXV 111281 . G A 4137.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.3780;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=25.07;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4137,438,0 chrXV 111418 . C T 3103 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.15;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3136,336,0 chrXV 112291 . A T 3006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=4.604;HaplotypeScore=7.6652;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.750;QD=23.30;ReadPosRankSum=1.596;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3039,318,0 chrXV 113253 . A G 2036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.5675;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.341;QD=16.03;ReadPosRankSum=1.705;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2069,225,0 chrXV 113345 . G C 3100 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.03;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3133,354,0 chrXV 113440 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=16.1817;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.78;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3256,354,0 chrXV 113551 . A T 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.490;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-1.344;QD=24.10;ReadPosRankSum=1.655;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3264,348,0 chrXV 113612 . G A 2730 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=22.38;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2763,285,0 chrXV 113614 . T A 2663 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.83;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2696,294,0 chrXV 113653 . C T 3517.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.2042;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.14;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3517,369,0 chrXV 113780 . G T 2076 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.86;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2109,231,0 chrXV 114130 . C T 3280.01 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=26.67;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3280,351,0 chrXV 114525 . A C 5023.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=14.3462;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.94;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5023,552,0 chrXV 114813 . G A 9640.01 filter AC=2;AF=1.00;AN=2;DP=406;Dels=0.00;FS=0.000;HaplotypeScore=31.1518;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=23.74;SB=-3.091e+03 GT:AD:DP:GQ:PL 1/1:0,400:406:99:9640,1039,0 chrXV 115004 . T C 11568.01 filter AC=2;AF=1.00;AN=2;DP=519;Dels=0.00;FS=0.000;HaplotypeScore=9.7084;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=22.29;SB=-6.619e+03 GT:AD:DP:GQ:PL 1/1:0,516:519:99:11568,1270,0 chrXV 115023 . C G 11076.01 filter AC=2;AF=1.00;AN=2;DP=523;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=21.18;SB=-6.031e+03 GT:AD:DP:GQ:PL 1/1:0,520:523:99:11076,1230,0 chrXV 115059 . A G 658.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.105;DP=880;Dels=0.00;FS=12.430;HaplotypeScore=99.7587;MLEAC=1;MLEAF=0.500;MQ=36.52;MQ0=0;MQRankSum=-7.887;QD=0.75;ReadPosRankSum=-6.915;SB=-3.460e+02 GT:AD:DP:GQ:PL 0/1:705,174:880:99:688,0,9232 chrXV 115062 . G A 787.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.872;DP=870;Dels=0.00;FS=16.966;HaplotypeScore=169.3699;MLEAC=1;MLEAF=0.500;MQ=36.20;MQ0=0;MQRankSum=-6.035;QD=0.90;ReadPosRankSum=-6.419;SB=-4.090e+02 GT:AD:DP:GQ:PL 0/1:690,180:870:99:817,0,8878 chrXV 115071 . A G 1312.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.693;DP=848;Dels=0.00;FS=0.306;HaplotypeScore=201.3006;MLEAC=1;MLEAF=0.500;MQ=35.56;MQ0=0;MQRankSum=-10.693;QD=1.55;ReadPosRankSum=-1.560;SB=-9.280e+02 GT:AD:DP:GQ:PL 0/1:630,218:848:99:1342,0,7781 chrXV 115074 . A G 7240.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.551;DP=842;Dels=0.00;FS=6.502;HaplotypeScore=166.7049;MLEAC=1;MLEAF=0.500;MQ=35.23;MQ0=0;MQRankSum=-0.008;QD=8.60;ReadPosRankSum=-2.253;SB=-3.668e+03 GT:AD:DP:GQ:PL 0/1:259,583:842:99:7240,0,1690 chrXV 115083 . A G 1566.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.860;DP=798;Dels=0.00;FS=5.902;HaplotypeScore=280.0427;MLEAC=1;MLEAF=0.500;MQ=33.70;MQ0=0;MQRankSum=-3.254;QD=1.96;ReadPosRankSum=6.808;SB=-1.145e+03 GT:AD:DP:GQ:PL 0/1:575,223:798:99:1596,0,6584 chrXV 115086 . A G 4442.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-16.176;DP=778;Dels=0.00;FS=6.352;HaplotypeScore=283.3512;MLEAC=1;MLEAF=0.500;MQ=33.55;MQ0=0;MQRankSum=-3.527;QD=5.71;ReadPosRankSum=-5.702;SB=-2.369e+03 GT:AD:DP:GQ:PL 0/1:357,421:778:99:4442,0,3439 chrXV 115092 . G A 8919.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.376;DP=728;Dels=0.00;FS=29.456;HaplotypeScore=562.5717;MLEAC=2;MLEAF=1.00;MQ=33.29;MQ0=0;MQRankSum=-4.035;QD=12.25;ReadPosRankSum=0.724;SB=-3.910e+03 GT:AD:DP:GQ:PL 1/1:39,689:728:99:8919,771,0 chrXV 115095 . A G 1555.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.775;DP=728;Dels=0.00;FS=3.796;HaplotypeScore=462.7916;MLEAC=1;MLEAF=0.500;MQ=33.29;MQ0=0;MQRankSum=-1.878;QD=2.14;ReadPosRankSum=9.405;SB=-1.129e+03 GT:AD:DP:GQ:PL 0/1:507,221:728:99:1585,0,5618 chrXV 115098 . A G 2975.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-14.858;DP=704;Dels=0.00;FS=2.590;HaplotypeScore=435.1402;MLEAC=1;MLEAF=0.500;MQ=33.43;MQ0=0;MQRankSum=-3.536;QD=4.23;ReadPosRankSum=-9.944;SB=-1.533e+03 GT:AD:DP:GQ:PL 0/1:404,300:704:99:3005,0,3899 chrXV 115104 . G A 5627.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.485;DP=639;Dels=0.00;FS=3.570;HaplotypeScore=709.1436;MLEAC=1;MLEAF=0.500;MQ=33.73;MQ0=0;MQRankSum=-7.619;QD=8.81;ReadPosRankSum=-5.220;SB=-2.450e+03 GT:AD:DP:GQ:PL 0/1:134,505:639:99:5627,0,699 chrXV 115107 . A G 1813.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.871;DP=637;Dels=0.00;FS=1.930;HaplotypeScore=658.5443;MLEAC=1;MLEAF=0.500;MQ=33.68;MQ0=0;MQRankSum=-3.715;QD=2.85;ReadPosRankSum=2.249;SB=-1.040e+03 GT:AD:DP:GQ:PL 0/1:399,238:637:99:1843,0,4260 chrXV 115110 . A G 1230.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-14.846;DP=621;Dels=0.00;FS=8.764;HaplotypeScore=553.7224;MLEAC=1;MLEAF=0.500;MQ=33.73;MQ0=0;MQRankSum=-1.998;QD=1.98;ReadPosRankSum=-8.745;SB=-7.310e+02 GT:AD:DP:GQ:PL 0/1:473,148:621:99:1260,0,4815 chrXV 115116 . G A 4320.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.092;DP=552;Dels=0.00;FS=4.244;HaplotypeScore=419.3062;MLEAC=1;MLEAF=0.500;MQ=34.20;MQ0=0;MQRankSum=-6.733;QD=7.83;ReadPosRankSum=-5.438;SB=-1.288e+03 GT:AD:DP:GQ:PL 0/1:173,379:552:99:4320,0,1240 chrXV 115119 . A G 2021.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-12.141;DP=550;Dels=0.00;FS=3.357;HaplotypeScore=350.5443;MLEAC=1;MLEAF=0.500;MQ=34.22;MQ0=0;MQRankSum=-2.669;QD=3.67;ReadPosRankSum=-8.347;SB=-7.490e+02 GT:AD:DP:GQ:PL 0/1:324,226:550:99:2051,0,3417 chrXV 115122 . A G 206.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.400;DP=528;Dels=0.00;FS=1.237;HaplotypeScore=353.9246;MLEAC=1;MLEAF=0.500;MQ=34.44;MQ0=0;MQRankSum=-0.570;QD=0.39;ReadPosRankSum=3.780;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:457,71:528:99:236,0,5123 chrXV 115128 . G A 2912.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.890;DP=384;Dels=0.00;FS=2.844;HaplotypeScore=210.6997;MLEAC=1;MLEAF=0.500;MQ=36.17;MQ0=0;MQRankSum=-5.146;QD=7.58;ReadPosRankSum=-3.288;SB=-2.960e+02 GT:AD:DP:GQ:PL 0/1:171,213:384:99:2942,0,1642 chrXV 115131 . A G 591.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.470;DP=355;Dels=0.00;FS=7.195;HaplotypeScore=210.7475;MLEAC=1;MLEAF=0.500;MQ=36.45;MQ0=0;MQRankSum=-1.792;QD=1.66;ReadPosRankSum=-1.623;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:279,76:355:99:621,0,2989 chrXV 115149 . A G 98.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=19.5439;MLEAC=1;MLEAF=0.500;MQ=47.43;MQ0=0;MQRankSum=-5.203;QD=1.01;ReadPosRankSum=3.069;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:69,28:97:99:128,0,732 chrXV 115152 . C A 102.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.900;DP=85;Dels=0.00;FS=5.400;HaplotypeScore=19.5729;MLEAC=1;MLEAF=0.500;MQ=46.80;MQ0=0;MQRankSum=-4.433;QD=1.20;ReadPosRankSum=0.517;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:47,38:85:99:132,0,630 chrXV 115154 . A T 99.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;DP=84;Dels=0.00;FS=3.599;HaplotypeScore=21.0723;MLEAC=1;MLEAF=0.500;MQ=47.40;MQ0=0;MQRankSum=-3.462;QD=1.18;ReadPosRankSum=1.554;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:44,40:84:99:129,0,620 chrXV 115155 . G A 90.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.465;DP=87;Dels=0.00;FS=3.629;HaplotypeScore=22.8442;MLEAC=1;MLEAF=0.500;MQ=47.22;MQ0=0;MQRankSum=-3.960;QD=1.03;ReadPosRankSum=1.541;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:44,43:87:99:120,0,529 chrXV 115336 . G T 4624.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.2551;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=23.47;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4624,501,0 chrXV 115446 . T C 3595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.148;QD=22.47;ReadPosRankSum=1.710;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3595,390,0 chrXV 116289 . C T 1814 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1847,198,0 chrXV 116676 . T A 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.341;DP=134;Dels=0.00;FS=3.109;HaplotypeScore=11.2508;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-0.899;QD=21.60;ReadPosRankSum=0.820;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2927,315,0 chrXV 116712 . C T 2513 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.30;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2546,273,0 chrXV 116735 . G A 2025 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=19.29;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2058,222,0 chrXV 116885 . T C 3446.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.10;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3446,378,0 chrXV 117014 . T C 3747.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.66;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3747,405,0 chrXV 117048 . C T 3490.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0534;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=25.11;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3490,369,0 chrXV 117260 . A G 3398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.590;QD=23.27;ReadPosRankSum=1.566;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3398,375,0 chrXV 117367 . A G 3900.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.205;QD=22.81;ReadPosRankSum=1.712;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3900,432,0 chrXV 117689 . C A 1176 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=36.36;MQ0=0;QD=18.09;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1209,132,0 chrXV 117698 . C T 853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=55;Dels=0.00;FS=21.392;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;MQRankSum=2.357;QD=15.51;ReadPosRankSum=2.217;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:2,51:55:93:886,93,0 chrXV 123636 . C G 216.01 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.9760;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=0;QD=3.48;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:27:249,27,0 chrXV 123914 . A G 3907.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.12;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3907,426,0 chrXV 124126 . A G 4009.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.9573;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.91;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4009,444,0 chrXV 124618 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.2059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3365,357,0 chrXV 125209 . A T 3567.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.2107;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=24.43;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3567,381,0 chrXV 125231 . T C 3793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=-0.054;QD=23.86;ReadPosRankSum=1.689;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3793,420,0 chrXV 125570 . T C 3604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=175;Dels=0.00;FS=10.433;HaplotypeScore=11.6610;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.330;QD=20.59;ReadPosRankSum=2.422;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3604,393,0 chrXV 125599 . G A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.7634;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.31;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3665,393,0 chrXV 125641 . C A 4223.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.08;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4223,450,0 chrXV 125838 . C T 2019 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.19;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2052,231,0 chrXV 125892 . G A 1757 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.74;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1790,192,0 chrXV 126243 . G A 4114.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4114,438,0 chrXV 126617 . T C 5197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=216;Dels=0.00;FS=3.009;HaplotypeScore=9.8048;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.679;QD=24.06;ReadPosRankSum=2.415;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:5197,567,0 chrXV 126866 . C G 2375 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.2313;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.27;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2408,261,0 chrXV 126868 . T G 2363 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=18.61;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2396,264,0 chrXV 127096 . A G 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=110;Dels=0.00;FS=4.142;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=0.397;QD=23.30;ReadPosRankSum=1.700;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2596,285,0 chrXV 127240 . G A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.06;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3238,342,0 chrXV 127810 . T G 2653 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.57;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2686,306,0 chrXV 128405 . G A 4602.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=12.8548;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.48;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4602,490,0 chrXV 128605 . A T 4390.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.31;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4390,468,0 chrXV 128710 . G T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3703,408,0 chrXV 130049 . A G 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=125;Dels=0.00;FS=7.942;HaplotypeScore=13.2323;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=0.050;QD=22.90;ReadPosRankSum=2.370;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2895,318,0 chrXV 131288 . A G 5008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=225;Dels=0.00;FS=2.992;HaplotypeScore=14.8681;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-2.188;QD=22.26;ReadPosRankSum=2.319;SB=-2.462e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5008,561,0 chrXV 131471 . T G 4646.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4646,516,0 chrXV 131694 . A G 3077 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.31;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3110,345,0 chrXV 132210 . T C 2879 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.3814;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2912,315,0 chrXV 132449 . C A 1747 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.30;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1780,192,0 chrXV 132501 . G A 2090 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.02;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2123,231,0 chrXV 134063 . G A 2611 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2644,282,0 chrXV 134265 . T C 2585 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.6117;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2618,285,0 chrXV 134516 . G A 2587 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.4806;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.92;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2620,288,0 chrXV 134974 . G C 4319.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.9324;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4319,477,0 chrXV 135614 . G A 3911.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.74;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3911,426,0 chrXV 135655 . A G 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.146;DP=178;Dels=0.00;FS=2.912;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.760;QD=22.44;ReadPosRankSum=2.408;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3994,438,0 chrXV 135770 . G A 3410.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3410,360,0 chrXV 137851 . A C 1909 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=12.1842;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=16.32;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1942,213,0 chrXV 138182 . G A 1957 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.4637;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1990,207,0 chrXV 138302 . G A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.22;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3354,357,0 chrXV 138497 . C T 3654.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.04;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3654,399,0 chrXV 138539 . G A 3856.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.23;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3856,408,0 chrXV 138847 . T C 3414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.331;QD=23.07;ReadPosRankSum=1.685;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3414,378,0 chrXV 139351 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=3.720;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-1.091;QD=22.66;ReadPosRankSum=1.708;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3353,369,0 chrXV 139359 . T G 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=0.889;QD=22.41;ReadPosRankSum=1.685;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3317,360,0 chrXV 141336 . T G 1665 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.91;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1698,192,0 chrXV 142835 . C T 3987.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3987,426,0 chrXV 143222 . G A 3476.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.2211;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.14;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3476,375,0 chrXV 143597 . C T 4734.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.03;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4734,493,0 chrXV 143784 . A G 4453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=193;Dels=0.00;FS=2.976;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.889;QD=23.07;ReadPosRankSum=2.347;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4453,489,0 chrXV 143811 . G A 3830.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.07;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3830,414,0 chrXV 143904 . T C 3423.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3423,381,0 chrXV 144040 . C A 2798 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.12;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2831,312,0 chrXV 144655 . C T 5231.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=12.0135;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.53;SB=-2.879e+03 GT:AD:DP:GQ:PL 1/1:0,240:243:99:5231,553,0 chrXV 144671 . C G 4612.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.77;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4612,513,0 chrXV 145519 . T C 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.4090;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.000;QD=22.42;ReadPosRankSum=1.676;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2813,309,0 chrXV 145551 . G A 3890.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.01;FS=0.000;HaplotypeScore=12.9400;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.01;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3890,412,0 chrXV 145654 . C T 3449.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.15;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3449,375,0 chrXV 146188 . G A 3418.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.41;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3418,360,0 chrXV 146225 . G A 2914 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.75;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2947,306,0 chrXV 146231 . T C 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=126;Dels=0.00;FS=3.410;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-0.125;QD=20.52;ReadPosRankSum=1.677;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2618,288,0 chrXV 147891 . A C 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.106;QD=23.56;ReadPosRankSum=1.711;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3911,432,0 chrXV 147981 . G A 4625.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.7337;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.24;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4625,504,0 chrXV 148131 . A G 3779.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.928;QD=22.49;ReadPosRankSum=1.711;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3779,429,0 chrXV 148159 . T C 4093.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.8794;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.32;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4093,450,0 chrXV 148695 . C T 3178 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.5953;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=24.26;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3211,345,0 chrXV 148719 . C G 2723 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=20.02;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2756,303,0 chrXV 148734 . C T 2954 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.96;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2987,321,0 chrXV 148894 . A G 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.325;DP=169;Dels=0.00;FS=17.693;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=0.481;QD=21.46;ReadPosRankSum=3.366;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:4,165:169:99:3626,408,0 chrXV 148914 . T C 3032 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=18.05;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3065,336,0 chrXV 148926 . T A 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=-1.570;QD=17.59;ReadPosRankSum=1.692;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3041,336,0 chrXV 148966 . C T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=18.51;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3665,393,0 chrXV 149046 . G A 4079.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=17.0485;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.31;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:4079,430,0 chrXV 149214 . A G 4587.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.8643;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.17;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,194:198:99:4587,501,0 chrXV 149247 . G C 5265.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.40;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5265,582,0 chrXV 149394 . T C 5422.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=9.4216;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.07;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5422,606,0 chrXV 149706 . A T 4813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=201;Dels=0.00;FS=4.001;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.439;QD=23.95;ReadPosRankSum=1.680;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:1,200:201:99:4813,514,0 chrXV 150111 . G A 3396.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.58;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3396,369,0 chrXV 150501 . C G 2250 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.64;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2283,252,0 chrXV 150504 . C T 2236 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.70;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2269,240,0 chrXV 150543 . C T 2374 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.78;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2407,255,0 chrXV 150653 . T C 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=105;Dels=0.00;FS=3.794;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.059;QD=22.70;ReadPosRankSum=1.698;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2417,273,0 chrXV 150756 . T A 2825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=127;Dels=0.00;FS=2.991;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-0.264;QD=22.24;ReadPosRankSum=2.411;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2858,309,0 chrXV 150844 . A C 3117 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3150,357,0 chrXV 150962 . A G 5087.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.46;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5087,567,0 chrXV 151148 . C A 4467.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.0179;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.79;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4467,492,0 chrXV 151183 . T C 5151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=216;Dels=0.00;FS=3.762;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.178;QD=23.85;ReadPosRankSum=1.700;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:5151,567,0 chrXV 151304 . C T 3159 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.40;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3192,342,0 chrXV 151369 . T C 3432.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.51;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3432,372,0 chrXV 151443 . C T 2971 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.0089;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.77;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3004,318,0 chrXV 151709 . A T 2771 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.52;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2804,312,0 chrXV 151910 . T A 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9174;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.192;QD=24.49;ReadPosRankSum=1.681;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3355,375,0 chrXV 151997 . G A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3325,357,0 chrXV 152141 . G A 2969 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=13.7267;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.99;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3002,324,0 chrXV 152301 . C T 2302 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.57;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2335,249,0 chrXV 152359 . A G 2536 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.44;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2569,285,0 chrXV 152407 . T G 2541 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.0755;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.91;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2574,288,0 chrXV 152892 . C T 3453.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.49;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3453,366,0 chrXV 153180 . T G 5524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.9064;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.109;QD=24.88;ReadPosRankSum=1.716;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:5524,609,0 chrXV 153242 . C T 3167 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.74;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3200,348,0 chrXV 153262 . T C 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=156;Dels=0.00;FS=6.163;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=0.471;QD=17.30;ReadPosRankSum=2.322;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:2732,297,0 chrXV 153279 . A T 2865 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.5678;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=18.37;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2898,312,0 chrXV 153317 . T C 4034.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.58;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4034,456,0 chrXV 153362 . G A 5211.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=14.8643;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.76;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5211,553,0 chrXV 153516 . G A 3797.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=24.98;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3797,400,0 chrXV 153615 . T C 3648.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.00;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3648,399,0 chrXV 153733 . C A 3624.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.65;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3624,387,0 chrXV 153740 . A G 3553.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.90;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3553,399,0 chrXV 153928 . C T 4726.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.24;SB=-2.687e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4726,502,0 chrXV 154165 . T C 4400.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.91;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:4400,486,0 chrXV 154799 . T G 2435 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2468,276,0 chrXV 155997 . C A 4647.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.24;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4647,495,0 chrXV 156059 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=164;Dels=0.00;FS=6.004;HaplotypeScore=8.1130;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.248;QD=21.80;ReadPosRankSum=2.845;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:3,159:164:99:3576,396,0 chrXV 156082 . A G 3278.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.1951;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.57;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3278,363,0 chrXV 156178 . G A 4036.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.82;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4036,441,0 chrXV 156337 . T C 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.4924;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.512;QD=20.69;ReadPosRankSum=1.667;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3311,375,0 chrXV 156508 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=163;Dels=0.00;FS=3.029;HaplotypeScore=11.4303;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.252;QD=20.90;ReadPosRankSum=2.389;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:2,159:163:99:3406,387,0 chrXV 156746 . A G 2917 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.79;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2950,324,0 chrXV 156784 . A G 2872 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.27;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2905,324,0 chrXV 156847 . T C 2604 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.67;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2637,300,0 chrXV 156898 . C T 2720 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2753,297,0 chrXV 157101 . C T 2492 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.51;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2525,270,0 chrXV 157207 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.34;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3671,408,0 chrXV 157219 . T C 3815.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.1889;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.96;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3815,432,0 chrXV 157396 . G A 4091.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.60;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4091,435,0 chrXV 158048 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3687,399,0 chrXV 158170 . A G 5682.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.1998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5682,621,0 chrXV 158239 . A G 5690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=245;Dels=0.00;FS=3.598;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.898;QD=23.22;ReadPosRankSum=1.718;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:5690,627,0 chrXV 158453 . T C 4321.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4321,471,0 chrXV 158905 . G T 4058.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.5662;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.17;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4058,430,0 chrXV 159066 . G A 2767 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.96;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2800,303,0 chrXV 159092 . G A 2617 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=19.68;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2650,291,0 chrXV 159144 . G A 4377.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8863;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.53;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4377,474,0 chrXV 159369 . G A 2885 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.37;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2918,312,0 chrXV 160139 . G A 2925 SnpCluster AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=27.00;MQ0=0;QD=15.08;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,194:194:99:2958,344,0 chrXV 160141 . T C 2289 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.398;DP=187;Dels=0.00;FS=6.651;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=25.87;MQ0=0;MQRankSum=-2.232;QD=12.24;ReadPosRankSum=5.135;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:11,174:187:99:2322,278,0 chrXV 160142 . G T 2291 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=5.489;DP=185;Dels=0.00;FS=6.651;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=0;MQRankSum=-1.687;QD=12.38;ReadPosRankSum=5.141;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:11,174:185:99:2324,278,0 chrXV 160153 . G C 2072 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.002;DP=172;Dels=0.00;FS=20.238;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.04;MQ0=2;MQRankSum=-2.146;QD=12.05;ReadPosRankSum=2.074;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:4,168:172:99:2105,215,0 chrXV 160154 . G A 2049 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.314;DP=170;Dels=0.00;FS=21.258;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.00;MQ0=2;MQRankSum=-2.113;QD=12.05;ReadPosRankSum=2.040;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:4,166:170:99:2082,206,0 chrXV 160163 . G A 1625 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.6823;MLEAC=2;MLEAF=1.00;MQ=19.04;MQ0=2;MQRankSum=0.543;QD=9.50;ReadPosRankSum=1.445;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:1,170:171:99:1658,203,0 chrXV 160213 . G C 2804 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.5479;MLEAC=2;MLEAF=1.00;MQ=23.39;MQ0=2;QD=12.92;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,216:217:99:2837,309,0 chrXV 160403 . G A 1047 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=20.01;MQ0=2;QD=5.29;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,198:198:99:1080,117,0 chrXV 160414 . G A 926 SnpCluster AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=19.3302;MLEAC=2;MLEAF=1.00;MQ=22.60;MQ0=1;QD=4.27;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:959,105,0 chrXV 160419 . A G 1326 SnpCluster AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=23.90;MQ0=1;QD=5.84;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:1359,150,0 chrXV 160420 . C T 1363 SnpCluster AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=24.25;MQ0=1;QD=5.95;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:1396,150,0 chrXV 160439 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=15.4674;MLEAC=2;MLEAF=1.00;MQ=32.92;MQ0=0;QD=10.77;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:2974,324,0 chrXV 161509 . T C 4992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=208;Dels=0.00;FS=5.026;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.573;QD=24.00;ReadPosRankSum=3.360;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:4,204:208:99:4992,555,0 chrXV 161986 . C T 4794.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.79;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:4794,519,0 chrXV 162093 . T C 4312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=3.288;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.482;QD=22.11;ReadPosRankSum=1.679;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4312,477,0 chrXV 162209 . C G 4012.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.54;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4012,441,0 chrXV 162265 . C T 4079.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=15.8681;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.29;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4079,435,0 chrXV 162766 . C T 5869.01 PASS AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=33.3606;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.15;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,262:265:99:5869,645,0 chrXV 163253 . T C 5095.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=21.2831;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.59;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,231:236:99:5095,564,0 chrXV 163669 . G A 8768.01 filter AC=2;AF=1.00;AN=2;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.96;SB=-3.762e+03 GT:AD:DP:GQ:PL 1/1:0,366:366:99:8768,952,0 chrXV 163857 . A G 7235.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=367;Dels=0.00;FS=0.000;HaplotypeScore=18.2554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.060;QD=19.71;ReadPosRankSum=1.723;SB=-3.685e+03 GT:AD:DP:GQ:PL 1/1:1,365:367:99:7235,793,0 chrXV 164187 . T G 4826.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4826,531,0 chrXV 164683 . C T 5208.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=6.6731;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.78;SB=-2.800e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5208,553,0 chrXV 164708 . A G 4472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.4702;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.866;QD=21.81;ReadPosRankSum=1.698;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4472,492,0 chrXV 165618 . G A 2264 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2297,243,0 chrXV 165659 . T C 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=13.1990;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.866;QD=24.11;ReadPosRankSum=1.700;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2661,291,0 chrXV 166077 . G C 2454 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.34;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2487,276,0 chrXV 166088 . G A 2034 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=20.55;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2067,225,0 chrXV 166324 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.3760;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.45;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3245,339,0 chrXV 167021 . A T 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=127;Dels=0.00;FS=7.806;HaplotypeScore=3.9178;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.017;QD=22.54;ReadPosRankSum=2.353;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2895,309,0 chrXV 167933 . C T 2955 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.02;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2988,318,0 chrXV 167995 . G T 2840 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.19;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2873,312,0 chrXV 168043 . G C 2677 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.69;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2710,300,0 chrXV 168119 . A G 2831 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.61;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2864,327,0 chrXV 168449 . A G 4231.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=25.04;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4231,465,0 chrXV 170671 . T C 3556.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.3876;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.04;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3556,399,0 chrXV 171278 . G A 4824.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=21.25;SB=-2.957e+03 GT:AD:DP:GQ:PL 1/1:0,223:227:99:4824,519,0 chrXV 171288 . T C 4931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=15.0881;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.315;QD=20.38;ReadPosRankSum=1.675;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:4931,555,0 chrXV 172515 . T C 6004.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=291;Dels=0.00;FS=9.969;HaplotypeScore=17.7652;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.906;QD=20.63;ReadPosRankSum=2.906;SB=-3.549e+03 GT:AD:DP:GQ:PL 1/1:3,286:291:99:6004,669,0 chrXV 173080 . G A 2792 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.52;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2825,309,0 chrXV 173668 . T C 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=17.4102;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=0.771;QD=22.50;ReadPosRankSum=1.710;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3510,387,0 chrXV 173776 . T C 3425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=160;Dels=0.00;FS=7.676;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.136;QD=21.41;ReadPosRankSum=2.357;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3425,384,0 chrXV 173907 . G A 5122.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=24.39;SB=-2.270e+03 GT:AD:DP:GQ:PL 1/1:0,208:210:99:5122,550,0 chrXV 173911 . C A 4767.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.70;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4767,522,0 chrXV 174294 . C T 3319.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.93;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3319,354,0 chrXV 175032 . G A 3009 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.88;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3042,327,0 chrXV 175992 . C G 4945.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.98;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:0,222:225:99:4945,552,0 chrXV 177738 . G A 4256.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.9747;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.78;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4256,450,0 chrXV 178021 . C T 3754.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.4840;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.91;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3754,399,0 chrXV 178128 . T C 4482.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4482,498,0 chrXV 178180 . G T 4472.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.0219;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.60;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4472,483,0 chrXV 178620 . T C 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=171;Dels=0.00;FS=6.576;HaplotypeScore=14.0033;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.123;QD=23.43;ReadPosRankSum=2.363;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:4007,444,0 chrXV 178876 . A G 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.739;QD=21.56;ReadPosRankSum=1.711;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3558,390,0 chrXV 178888 . C T 3920.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=23.20;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3920,420,0 chrXV 179942 . G A 4428.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=15.0082;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.31;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:4428,472,0 chrXV 180210 . C T 3531.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.0878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3531,381,0 chrXV 180459 . G A 2884 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.65;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2917,315,0 chrXV 180534 . A G 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.920;QD=18.71;ReadPosRankSum=1.565;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2765,306,0 chrXV 180627 . A G 2463 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.24;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,102:106:99:2496,279,0 chrXV 180685 . C T 2654 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.04;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2687,288,0 chrXV 180906 . A G 3608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=155;Dels=0.00;FS=11.040;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.591;QD=23.28;ReadPosRankSum=2.955;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:3,152:155:99:3608,399,0 chrXV 181044 . A G 2621 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.5309;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.16;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2654,300,0 chrXV 181215 . A G 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=175;Dels=0.00;FS=10.454;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.155;QD=20.01;ReadPosRankSum=2.960;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:3502,387,0 chrXV 181216 . C T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.80;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,169:173:99:3599,381,0 chrXV 181290 . G A 3711.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.33;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3711,393,0 chrXV 181573 . C T 2186 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=25.42;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2219,237,0 chrXV 181602 . C A 1922 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.09;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1955,216,0 chrXV 182491 . T C 3642.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=167;Dels=0.00;FS=10.467;HaplotypeScore=14.9439;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=1.914;QD=21.81;ReadPosRankSum=2.920;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:3,161:167:99:3642,405,0 chrXV 182727 . A G 3489.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=21.02;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3489,387,0 chrXV 182737 . A G 3192 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=18.67;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3225,363,0 chrXV 182738 . C A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=19.25;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3407,369,0 chrXV 182884 . C T 4275.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.74;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4275,471,0 chrXV 182917 . T C 4031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;MQRankSum=0.028;QD=21.56;ReadPosRankSum=1.713;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4031,459,0 chrXV 182944 . C T 3519.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=19.02;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3519,405,0 chrXV 182946 . T C 3396.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;QD=18.76;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3396,396,0 chrXV 182971 . C T 3276.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=18.61;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3276,369,0 chrXV 183010 . A T 4165.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.2916;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.58;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4165,453,0 chrXV 183184 . C T 5256.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=22.95;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:5256,567,0 chrXV 183196 . C T 5073.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=6.0080;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=22.75;SB=-2.901e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5073,546,0 chrXV 183244 . T C 5669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=262;Dels=0.00;FS=3.955;HaplotypeScore=15.4484;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=0.484;QD=21.64;ReadPosRankSum=1.706;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:1,260:262:99:5669,627,0 chrXV 183281 . A G 5372.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.57;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5372,600,0 chrXV 183523 . T C 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=5.133;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-1.270;QD=21.80;ReadPosRankSum=1.686;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3314,366,0 chrXV 183528 . G A 3285.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.61;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3285,351,0 chrXV 183991 . C T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.47;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3239,348,0 chrXV 184072 . G A 3448.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.12;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3448,363,0 chrXV 184100 . G T 3674.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.99;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3674,387,0 chrXV 184291 . A C 3316.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.03;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3316,366,0 chrXV 184609 . T A 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=19.9612;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.420;QD=20.98;ReadPosRankSum=1.640;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:4070,453,0 chrXV 185240 . A T 2859 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.63;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2892,312,0 chrXV 185513 . G A 3081 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.5239;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=24.65;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3114,330,0 chrXV 185836 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2735,294,0 chrXV 185951 . T G 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.064;QD=22.44;ReadPosRankSum=1.668;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2456,273,0 chrXV 186751 . C T 3552.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.62;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3552,378,0 chrXV 186759 . T C 3786.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=7.169;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.451;QD=22.81;ReadPosRankSum=2.361;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3786,414,0 chrXV 186810 . T C 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.3451;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.290;QD=22.40;ReadPosRankSum=1.711;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3606,402,0 chrXV 186970 . T G 3937.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.3322;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.12;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3937,429,0 chrXV 187008 . A G 4991.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=214;Dels=0.00;FS=3.714;HaplotypeScore=10.5875;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=0.583;QD=23.32;ReadPosRankSum=1.700;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4991,549,0 chrXV 187179 . T C 4595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=0.582;QD=20.33;ReadPosRankSum=1.686;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:4595,507,0 chrXV 187188 . T C 4394.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=19.79;SB=-2.944e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4394,480,0 chrXV 187197 . A G 4251.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=18.32;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:4251,471,0 chrXV 187293 . A G 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.1435;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.220;QD=21.79;ReadPosRankSum=1.694;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3965,435,0 chrXV 187423 . C T 5003.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=25.14;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5003,538,0 chrXV 187590 . T C 2795 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2828,306,0 chrXV 188321 . C T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.29;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3328,354,0 chrXV 188616 . A C 2597 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.82;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2630,294,0 chrXV 188662 . A T 3016 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.5909;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.93;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3049,321,0 chrXV 188862 . G T 1964 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.66;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1997,219,0 chrXV 189241 . A G 2003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-1.181;QD=22.76;ReadPosRankSum=1.693;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2036,219,0 chrXV 189256 . G A 1801 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.19;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1834,204,0 chrXV 189304 . A C 2113 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.22;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2146,240,0 chrXV 189446 . G A 1385 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.51;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1418,156,0 chrXV 189546 . C T 1785 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=1.8997;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.40;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1818,198,0 chrXV 189547 . T C 1674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=91;Dels=0.00;FS=3.793;HaplotypeScore=2.5671;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.971;QD=18.40;ReadPosRankSum=1.656;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1707,195,0 chrXV 189652 . T C 2154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.638;QD=22.67;ReadPosRankSum=1.623;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2187,237,0 chrXV 189653 . T C 2153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=96;Dels=0.00;FS=2.743;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-1.270;QD=22.43;ReadPosRankSum=2.398;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2186,234,0 chrXV 189700 . T A 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=13.4253;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.624;QD=20.21;ReadPosRankSum=1.677;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2580,273,0 chrXV 189822 . A G 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=159;Dels=0.00;FS=11.775;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=1.044;QD=23.07;ReadPosRankSum=2.918;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:3,156:159:99:3668,399,0 chrXV 189928 . T C 5478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=228;Dels=0.00;FS=5.603;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.836;QD=24.03;ReadPosRankSum=2.871;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:3,223:228:99:5478,603,0 chrXV 190009 . G A 5036.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.4743;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5036,541,0 chrXV 191548 . T C 2021 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.62;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2054,228,0 chrXV 191767 . T A 3677.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=146;Dels=0.00;FS=2.939;HaplotypeScore=13.6384;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.060;QD=25.18;ReadPosRankSum=2.398;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3677,402,0 chrXV 192333 . T G 4427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=195;Dels=0.00;FS=3.771;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.601;QD=22.70;ReadPosRankSum=1.660;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,192:195:99:4427,483,0 chrXV 192748 . C A 3039 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.31;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3072,330,0 chrXV 192783 . A G 2568 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.95;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2601,285,0 chrXV 192793 . T A 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.633;DP=138;Dels=0.00;FS=17.614;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=0.591;QD=20.25;ReadPosRankSum=3.782;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:5,133:138:99:2828,300,0 chrXV 193147 . G A 5949.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=14.1703;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-2.389e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5949,637,0 chrXV 193217 . T C 5982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=13.4820;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.518;QD=23.01;ReadPosRankSum=1.692;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:1,258:260:99:5982,657,0 chrXV 193609 . G A 4454.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=24.6193;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.73;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4454,486,0 chrXV 193743 . G A 4502.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.01;FS=0.000;HaplotypeScore=26.0676;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=19.49;SB=-3.036e+03 GT:AD:DP:GQ:PL 1/1:0,228:229:99:4502,486,0 chrXV 193761 . A G 4839.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=236;Dels=0.00;FS=3.342;HaplotypeScore=16.8659;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.162;QD=20.50;ReadPosRankSum=1.717;SB=-2.830e+03 GT:AD:DP:GQ:PL 1/1:1,230:236:99:4839,534,0 chrXV 193911 . C T 5768.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=12.5644;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.60;SB=-3.370e+03 GT:AD:DP:GQ:PL 1/1:0,264:267:99:5768,607,0 chrXV 193928 . G T 5415.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=9.6528;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=21.07;SB=-3.366e+03 GT:AD:DP:GQ:PL 1/1:0,255:257:99:5415,585,0 chrXV 194054 . C T 4425.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.68;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4425,480,0 chrXV 194141 . C A 3751.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.3242;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.87;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3751,399,0 chrXV 194198 . T C 2813 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.87;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2846,321,0 chrXV 194959 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=18.5982;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.67;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3133,333,0 chrXV 195051 . A C 2368 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.7834;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.53;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2401,267,0 chrXV 195072 . A C 3107 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.68;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3140,345,0 chrXV 195130 . C T 3503.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.9772;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.31;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3503,372,0 chrXV 195170 . C A 3218.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.4925;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.60;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3251,351,0 chrXV 195188 . A G 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=143;Dels=0.00;FS=6.237;HaplotypeScore=7.1792;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.662;QD=20.42;ReadPosRankSum=2.381;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2953,318,0 chrXV 195644 . A C 4960.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.55;SB=-2.574e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4960,540,0 chrXV 195929 . A G 5835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=5.3506;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-0.705;QD=22.19;ReadPosRankSum=1.679;SB=-3.298e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:5835,651,0 chrXV 195938 . T C 5714.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=267;Dels=0.00;FS=10.156;HaplotypeScore=13.7660;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-2.079;QD=21.40;ReadPosRankSum=2.951;SB=-3.121e+03 GT:AD:DP:GQ:PL 1/1:3,264:267:99:5714,621,0 chrXV 196055 . A G 4702.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=16.9729;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.39;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4702,516,0 chrXV 196088 . G A 5181.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.44;SB=-2.769e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5181,556,0 chrXV 196465 . C T 2531 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=27.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2564,273,0 chrXV 196695 . T C 2275 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=13.07;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2308,255,0 chrXV 196803 . G A 3394.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.4318;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.73;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3394,363,0 chrXV 197127 . G T 293 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=13.95;SB=-1.359e+02 GT:AD:DP:GQ:PL 1/1:0,20:21:36:326,36,0 chrXV 197146 . A T 569 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=14.97;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:66:602,66,0 chrXV 197164 . T A 837 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.781;QD=16.41;ReadPosRankSum=1.664;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,50:51:93:870,93,0 chrXV 197183 . C T 1295 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.3755;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=17.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1328,147,0 chrXV 197943 . T C 4226.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.5911;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.13;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4226,471,0 chrXV 197955 . G C 4117.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.1049;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.11;SB=-2.431e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4117,468,0 chrXV 198003 . G A 4029.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.1994;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.95;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4029,435,0 chrXV 198093 . C T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.4686;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.75;SB=-2.646e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4461,483,0 chrXV 198105 . T A 4521.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.03;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4521,481,0 chrXV 198213 . A C 4756.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.65;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4756,525,0 chrXV 198587 . T G 4819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=215;Dels=0.00;FS=2.755;HaplotypeScore=11.3589;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.747;QD=22.41;ReadPosRankSum=2.392;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:2,210:215:99:4819,522,0 chrXV 198700 . C T 4511.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4511,472,0 chrXV 198772 . A G 3964.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.66;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3964,435,0 chrXV 199130 . T C 5267.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=218;Dels=0.00;FS=3.802;HaplotypeScore=8.1655;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.075;QD=24.16;ReadPosRankSum=1.668;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:1,215:218:99:5267,579,0 chrXV 199186 . T C 4405.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=17.0491;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.36;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,192:196:99:4405,495,0 chrXV 199433 . T C 3673.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.96;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3673,399,0 chrXV 200443 . C T 2793 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2826,303,0 chrXV 201256 . G A 3202 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3235,354,0 chrXV 202129 . T C 6966.01 PASS AC=2;AF=1.00;AN=2;DP=335;Dels=0.00;FS=0.000;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.79;SB=-3.664e+03 GT:AD:DP:GQ:PL 1/1:0,335:335:99:6966,768,0 chrXV 202185 . C T 7305.01 PASS AC=2;AF=1.00;AN=2;DP=349;Dels=0.00;FS=0.000;HaplotypeScore=27.8447;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.93;SB=-3.328e+03 GT:AD:DP:GQ:PL 1/1:0,346:349:99:7305,778,0 chrXV 202640 . G A 3580.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.81;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3580,387,0 chrXV 202662 . G T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.57;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3743,402,0 chrXV 203056 . T G 6117.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.08;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:6117,678,0 chrXV 203132 . C T 5842.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=21.2397;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:5842,610,0 chrXV 203233 . A G 4960.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=16.6904;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.07;SB=-2.759e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4960,546,0 chrXV 203284 . A G 4879.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4879,549,0 chrXV 203344 . G A 4205.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=19.2766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4205,450,0 chrXV 203386 . A C 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=204;Dels=0.00;FS=7.800;HaplotypeScore=19.7605;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.708;QD=22.47;ReadPosRankSum=2.425;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4583,495,0 chrXV 203632 . T C 6332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=273;Dels=0.00;FS=2.563;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.966;QD=23.19;ReadPosRankSum=2.974;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:3,266:273:99:6332,690,0 chrXV 203725 . G A 5303.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=15.1331;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.10;SB=-2.707e+03 GT:AD:DP:GQ:PL 1/1:0,235:240:99:5303,582,0 chrXV 203890 . T C 6647.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=19.6076;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.24;SB=-3.619e+03 GT:AD:DP:GQ:PL 1/1:0,284:286:99:6647,732,0 chrXV 203923 . T C 5293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=242;Dels=0.00;FS=3.010;HaplotypeScore=10.1055;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.888;QD=21.87;ReadPosRankSum=1.689;SB=-2.932e+03 GT:AD:DP:GQ:PL 1/1:1,241:242:99:5293,594,0 chrXV 203947 . T C 5399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=241;Dels=0.00;FS=9.876;HaplotypeScore=7.9692;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.301;QD=22.40;ReadPosRankSum=2.954;SB=-2.944e+03 GT:AD:DP:GQ:PL 1/1:3,237:241:99:5399,594,0 chrXV 204156 . C G 3732.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.20;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3732,408,0 chrXV 204409 . C T 1931 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.27;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1964,207,0 chrXV 204475 . G A 1292 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=17.70;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1325,144,0 chrXV 204502 . G A 1181 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=17.89;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1214,129,0 chrXV 204531 . C T 1012 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.8196;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=15.81;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1045,111,0 chrXV 204904 . T C 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=149;Dels=0.00;FS=5.795;HaplotypeScore=13.2713;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=1.349;QD=22.90;ReadPosRankSum=2.952;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:3412,375,0 chrXV 205095 . T A 3851.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=21.16;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3851,414,0 chrXV 205106 . T A 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=180;Dels=0.00;FS=3.108;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-0.751;QD=20.32;ReadPosRankSum=1.694;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3657,387,0 chrXV 205126 . T C 3750.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=199;Dels=0.00;FS=3.019;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-0.821;QD=18.84;ReadPosRankSum=2.376;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:3750,408,0 chrXV 205145 . G A 4278.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.0089;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.53;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4278,468,0 chrXV 205234 . T C 3357.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=153;Dels=0.00;FS=3.216;HaplotypeScore=12.2444;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.503;QD=21.94;ReadPosRankSum=1.709;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3357,381,0 chrXV 205723 . C G 4175.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=23.99;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4175,453,0 chrXV 205739 . C T 3859.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=22.83;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3859,420,0 chrXV 205844 . A G 3894.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.6549;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.376;QD=22.00;ReadPosRankSum=1.712;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3894,423,0 chrXV 205904 . T A 3093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=4.039;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=-0.460;QD=21.04;ReadPosRankSum=1.661;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3126,330,0 chrXV 205934 . A G 2338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;MQRankSum=-0.472;QD=17.71;ReadPosRankSum=1.706;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2371,264,0 chrXV 205945 . A T 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=111.5702;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;MQRankSum=-0.541;QD=16.47;ReadPosRankSum=1.651;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2141,225,0 chrXV 205985 . T C 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=138;Dels=0.00;FS=3.036;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;MQRankSum=0.332;QD=16.70;ReadPosRankSum=2.091;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:2337,252,0 chrXV 205996 . C T 2975 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=18.59;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3008,333,0 chrXV 206268 . A G 4216.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=18.99;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4216,471,0 chrXV 206274 . A G 4084.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.648;DP=230;Dels=0.00;FS=7.847;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.870;QD=17.76;ReadPosRankSum=3.785;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:5,224:230:99:4084,453,0 chrXV 206349 . T A 6898.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.62;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,319:319:99:6898,745,0 chrXV 206373 . G A 6396.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=5.5567;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.29;SB=-2.256e+03 GT:AD:DP:GQ:PL 1/1:0,287:287:99:6396,694,0 chrXV 206718 . A G 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.961;DP=180;Dels=0.00;FS=5.684;HaplotypeScore=13.5348;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.475;QD=20.38;ReadPosRankSum=2.938;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:3,175:180:99:3668,411,0 chrXV 206970 . T C 4218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=193;Dels=0.00;FS=2.801;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-1.164;QD=21.85;ReadPosRankSum=2.399;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4218,471,0 chrXV 206985 . A G 3977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=191;Dels=0.00;FS=8.300;HaplotypeScore=7.3790;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.747;QD=20.82;ReadPosRankSum=2.164;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:2,187:191:99:3977,432,0 chrXV 207058 . T C 3442.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.50;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3442,378,0 chrXV 207114 . A G 3208 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.5303;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.97;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3241,357,0 chrXV 207219 . C T 3829.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.01;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3829,408,0 chrXV 207397 . G A 4434.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.43;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4434,483,0 chrXV 207408 . C T 4503.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=20.38;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4503,475,0 chrXV 207452 . T G 5450.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.12;SB=-2.584e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:5450,606,0 chrXV 208002 . G A 3193 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.17;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3226,351,0 chrXV 208010 . T C 2967 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.18;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3000,333,0 chrXV 208100 . A G 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=145;Dels=0.00;FS=2.578;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.853;QD=20.83;ReadPosRankSum=2.811;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:3,141:145:99:3053,336,0 chrXV 208106 . T C 2728 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.91;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2761,300,0 chrXV 208220 . C T 2960 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=22.60;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2993,318,0 chrXV 208234 . T G 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645;DP=119;Dels=0.00;FS=3.274;HaplotypeScore=3.9402;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.160;QD=21.87;ReadPosRankSum=1.121;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2635,268,0 chrXV 208309 . T A 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=3.054;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=0.978;QD=22.48;ReadPosRankSum=1.664;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2303,246,0 chrXV 208421 . A G 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.5503;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.517;QD=22.02;ReadPosRankSum=1.702;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2543,279,0 chrXV 208452 . G A 2621 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.4848;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.03;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2654,285,0 chrXV 208486 . G C 3077 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.2961;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.98;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3110,339,0 chrXV 208517 . A C 3573.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.35;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3573,405,0 chrXV 208556 . T C 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.2320;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.134;QD=24.35;ReadPosRankSum=2.421;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:4163,462,0 chrXV 208643 . G A 3520.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.4568;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.95;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3520,372,0 chrXV 208678 . A G 4366.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=3.570;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.362;QD=23.99;ReadPosRankSum=1.713;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4366,480,0 chrXV 208904 . C T 4997.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=11.4155;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.99;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4997,532,0 chrXV 208980 . A G 4184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=181;Dels=0.00;FS=3.035;HaplotypeScore=8.2396;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.689;QD=23.12;ReadPosRankSum=2.409;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4184,471,0 chrXV 209070 . C G 3726.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=16.1524;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.51;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3726,405,0 chrXV 209102 . T C 3882.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.67;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3882,423,0 chrXV 209157 . A G 4095.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=176;Dels=0.00;FS=3.429;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.438;QD=23.27;ReadPosRankSum=1.712;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:4095,447,0 chrXV 209483 . G A 2957 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.10;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2990,324,0 chrXV 209501 . A T 3068 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.07;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3101,330,0 chrXV 209582 . T C 3372.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.42;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3372,381,0 chrXV 209698 . T C 3790.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.7148;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.97;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3790,420,0 chrXV 209762 . G A 4062.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.75;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4062,435,0 chrXV 209867 . T G 3485.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.1078;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.78;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3485,384,0 chrXV 209903 . T C 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.468;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-0.718;QD=22.79;ReadPosRankSum=1.683;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3223,363,0 chrXV 209963 . C T 2470 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=19.76;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2503,267,0 chrXV 209967 . A G 2441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.818;QD=19.07;ReadPosRankSum=1.704;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2474,267,0 chrXV 210056 . A G 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.735;QD=23.40;ReadPosRankSum=1.706;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3145,342,0 chrXV 210115 . T C 2605 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;MQRankSum=0.411;QD=18.74;ReadPosRankSum=1.682;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2638,291,0 chrXV 210116 . T C 2573 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=-1.657;QD=18.38;ReadPosRankSum=1.707;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2606,291,0 chrXV 210122 . A G 2399 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=139;Dels=0.00;FS=9.480;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;MQRankSum=-0.999;QD=17.26;ReadPosRankSum=2.414;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2432,279,0 chrXV 210327 . C A 3417.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=23.09;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3417,366,0 chrXV 210877 . T C 5255.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=16.9620;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.08;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5255,576,0 chrXV 210938 . T C 5191.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.2722;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=23.60;SB=-2.830e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:5191,561,0 chrXV 211015 . C T 5422.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.89;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5422,580,0 chrXV 211081 . A G 4401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.730;DP=196;Dels=0.00;FS=17.168;HaplotypeScore=17.4783;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.118;QD=22.45;ReadPosRankSum=3.770;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:5,191:196:99:4401,495,0 chrXV 211160 . C T 5290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=5.8568;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=0.065;QD=22.04;ReadPosRankSum=0.602;SB=-3.115e+03 GT:AD:DP:GQ:PL 1/1:1,238:240:99:5290,559,0 chrXV 211164 . C G 4804.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=2.7021;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=20.71;SB=-2.961e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:4804,534,0 chrXV 211180 . C T 4469.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.0506;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=19.69;SB=-2.858e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4469,475,0 chrXV 211399 . A T 4631.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=199;Dels=0.00;FS=2.933;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=0.019;QD=23.27;ReadPosRankSum=2.375;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4631,501,0 chrXV 213672 . G A 2685 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.83;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2718,294,0 chrXV 213775 . G A 2120 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2153,228,0 chrXV 213862 . T A 1139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=37.7790;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.538;QD=18.98;ReadPosRankSum=1.613;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1172,135,0 chrXV 214609 . T A 5148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.695;DP=234;Dels=0.00;FS=10.510;HaplotypeScore=19.6076;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.052;QD=22.00;ReadPosRankSum=2.858;SB=-2.666e+03 GT:AD:DP:GQ:PL 1/1:3,231:234:99:5148,544,0 chrXV 214699 . A G 5827.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=263;Dels=0.00;FS=3.746;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.151;QD=22.16;ReadPosRankSum=1.719;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:5827,645,0 chrXV 214734 . G A 4574.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.232;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.2144;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.081;QD=20.98;ReadPosRankSum=1.194;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4574,485,0 chrXV 214878 . G A 5779.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=13.9183;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-2.734e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5779,616,0 chrXV 214929 . C T 5661.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=22.5895;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.40;SB=-3.105e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5661,595,0 chrXV 215043 . A G 4549.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=201;Dels=0.00;FS=2.984;HaplotypeScore=14.1375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.593;QD=22.63;ReadPosRankSum=2.388;SB=-2.367e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4549,498,0 chrXV 215265 . C T 3838.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.69;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3838,411,0 chrXV 215310 . A G 4303.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.7644;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.13;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4303,474,0 chrXV 215484 . T C 4564.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.73;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4564,498,0 chrXV 215496 . C G 4490.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.8444;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.23;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4490,495,0 chrXV 215550 . G A 4559.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=14.9180;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.08;SB=-2.943e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4559,487,0 chrXV 215808 . C T 6779.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=18.8198;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.65;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,274:275:99:6779,727,0 chrXV 215865 . G A 6198.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.96;SB=-3.177e+03 GT:AD:DP:GQ:PL 1/1:0,270:270:99:6198,661,0 chrXV 215885 . A G 6068.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=282;Dels=0.00;FS=12.105;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.728;QD=21.52;ReadPosRankSum=2.967;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:3,274:282:99:6068,669,0 chrXV 216005 . A G 8489.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=364;Dels=0.00;FS=9.434;HaplotypeScore=17.1256;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;MQRankSum=-2.083;QD=23.32;ReadPosRankSum=2.920;SB=-4.582e+03 GT:AD:DP:GQ:PL 1/1:3,359:363:99:8489,922,0 chrXV 216039 . T C 6805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=314;Dels=0.00;FS=3.237;HaplotypeScore=14.0033;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;MQRankSum=-0.110;QD=21.67;ReadPosRankSum=1.721;SB=-3.909e+03 GT:AD:DP:GQ:PL 1/1:1,313:314:99:6805,765,0 chrXV 216176 . C T 4409.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=15.0030;MLEAC=2;MLEAF=1.00;MQ=35.24;MQ0=0;QD=20.13;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,211:219:99:4409,483,0 chrXV 216208 . C G 1285 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=36.36;MQ0=0;QD=7.84;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:1318,141,0 chrXV 216247 . G A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.3338;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=20.04;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3259,342,0 chrXV 216415 . A G 5232.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.4865;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=23.36;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,220:224:99:5232,597,0 chrXV 216757 . T C 3934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=196;Dels=0.00;FS=9.322;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.946;QD=20.07;ReadPosRankSum=2.387;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:3934,426,0 chrXV 217749 . G A 7555.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=24.3255;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.06;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:1,312:314:99:7555,808,0 chrXV 218142 . G A 4889.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4889,520,0 chrXV 218547 . C T 1324 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.98;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1357,141,0 chrXV 218875 . T C 4590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=26.1217;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.069;QD=22.50;ReadPosRankSum=1.715;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:1,201:204:99:4590,504,0 chrXV 219146 . A G 5377.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=16.8710;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.308;QD=21.25;ReadPosRankSum=1.718;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:5377,606,0 chrXV 219832 . T C 5111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=235;Dels=0.00;FS=3.016;HaplotypeScore=17.0531;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.883;QD=21.75;ReadPosRankSum=2.376;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:2,233:235:99:5111,561,0 chrXV 220335 . C T 3877.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=22.81;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3877,417,0 chrXV 220341 . G A 3705.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=22.32;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3705,390,0 chrXV 220371 . T A 2904 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=19.23;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2937,318,0 chrXV 220591 . T C 3524.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=151;Dels=0.00;FS=5.641;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.407;QD=23.34;ReadPosRankSum=2.927;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:3524,384,0 chrXV 220716 . A T 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.395;DP=139;Dels=0.00;FS=13.699;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-1.367;QD=22.04;ReadPosRankSum=3.194;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:4,135:139:99:3097,327,0 chrXV 220730 . A G 2656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=133;Dels=0.00;FS=7.119;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.835;QD=19.97;ReadPosRankSum=2.393;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:2,129:133:99:2689,297,0 chrXV 220880 . G A 4277.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.1525;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=23.89;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4277,453,0 chrXV 220974 . A G 3745.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.443;QD=24.01;ReadPosRankSum=1.621;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3745,411,0 chrXV 221003 . G A 3601.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=25.54;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3601,384,0 chrXV 221075 . G C 3903.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=23.23;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3903,432,0 chrXV 221105 . T C 3780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.289;DP=184;Dels=0.00;FS=9.096;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-0.289;QD=20.54;ReadPosRankSum=3.412;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:4,180:184:99:3780,420,0 chrXV 221112 . A G 3538.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=180;Dels=0.00;FS=3.261;HaplotypeScore=5.8497;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-0.448;QD=19.66;ReadPosRankSum=1.713;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:1,177:180:99:3538,390,0 chrXV 221465 . C T 4151.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.9549;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.71;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4151,441,0 chrXV 221858 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.20;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2567,270,0 chrXV 221862 . C T 2622 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.02;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2655,285,0 chrXV 221900 . T C 2237 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.3785;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=18.96;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2270,249,0 chrXV 221990 . G A 2538 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.17;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2571,270,0 chrXV 222129 . G A 2593 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.91;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2626,279,0 chrXV 222143 . C T 2643 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.49;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2676,285,0 chrXV 222461 . A G 3342.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.57;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3342,369,0 chrXV 222860 . C T 4674.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.2753;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.80;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:1,203:205:99:4674,498,0 chrXV 222869 . T C 4450.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.6723;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=21.60;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4450,492,0 chrXV 222935 . C T 3620.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=15.8224;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.68;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3620,384,0 chrXV 223192 . A G 2687 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.33;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2720,297,0 chrXV 223207 . T A 3058 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.00;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3091,327,0 chrXV 223438 . C T 3833.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.3322;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.72;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3833,408,0 chrXV 223565 . G A 3651.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=16.2173;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3651,382,0 chrXV 223663 . A G 3653.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.7482;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.83;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3653,414,0 chrXV 223864 . A G 3041 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3919;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.53;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3074,333,0 chrXV 223951 . A G 3567.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=24.43;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3567,393,0 chrXV 224038 . C T 2780 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=25.05;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2813,303,0 chrXV 224206 . G A 1022 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=41.7115;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=21.74;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1055,114,0 chrXV 224217 . C T 878 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=18.29;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:911,102,0 chrXV 224972 . C T 3722.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=15.8123;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.41;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3722,396,0 chrXV 225137 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.49;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3085,333,0 chrXV 225905 . A G 4305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=191;Dels=0.00;FS=2.994;HaplotypeScore=17.0774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.415;QD=22.54;ReadPosRankSum=2.424;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4305,474,0 chrXV 226333 . T G 3451.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.5236;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.83;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3451,375,0 chrXV 226585 . A G 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=3.054;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=0.052;QD=23.20;ReadPosRankSum=1.627;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2330,252,0 chrXV 226701 . A G 920 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=0.077;QD=19.17;ReadPosRankSum=2.348;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,46:48:99:953,105,0 chrXV 226710 . G A 990 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=22.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1023,108,0 chrXV 226751 . C T 1382 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=22.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1415,150,0 chrXV 226773 . C T 919 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.008;DP=85;Dels=0.00;FS=177.996;HaplotypeScore=57.5931;MLEAC=2;MLEAF=1.00;MQ=34.99;MQ0=0;MQRankSum=2.819;QD=10.81;ReadPosRankSum=-6.948;SB=-6.547e-03 GT:AD:DP:GQ:PL 1/1:30,51:85:55:952,55,0 chrXV 226802 . A G 321 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.20;MQ0=0;QD=5.94;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:39:354,39,0 chrXV 226812 . C G 343 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=0;QD=5.81;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:45:376,45,0 chrXV 226817 . G C 377 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.19;MQ0=0;QD=6.18;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,59:61:45:410,45,0 chrXV 226881 . T C 741 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=17.23;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:87:774,87,0 chrXV 226884 . T C 719 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=16.72;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:87:752,87,0 chrXV 226910 . T C 723 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.72;MQ0=0;QD=19.54;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:87:756,87,0 chrXV 226932 . C T 446 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.69;MQ0=0;QD=16.52;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:60:479,60,0 chrXV 226958 . T C 576 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=17.45;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:75:609,75,0 chrXV 226961 . G A 605 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.93;MQ0=0;QD=16.35;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:78:638,78,0 chrXV 226965 . C A 695 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=0;QD=17.37;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:87:728,87,0 chrXV 227003 . T G 1163 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.72;MQ0=0;QD=18.76;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1196,138,0 chrXV 227066 . A T 872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;MQRankSum=1.275;QD=16.15;ReadPosRankSum=1.667;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:905,99,0 chrXV 227158 . C G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.05;MQ0=0;QD=0.80;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,26:26:6:52,6,0 chrXV 227250 . C T 1221 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.35;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1254,135,0 chrXV 227264 . G A 1103 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=17.79;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1136,120,0 chrXV 227372 . A T 1329 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;QD=14.93;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1362,150,0 chrXV 227373 . C G 1336 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;QD=14.84;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1369,153,0 chrXV 227388 . G C 1582 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.6794;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=15.36;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1615,186,0 chrXV 227478 . T C 2592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=128;Dels=0.01;FS=7.156;HaplotypeScore=9.2319;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-0.048;QD=20.25;ReadPosRankSum=2.275;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2625,288,0 chrXV 227824 . G A 3133 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.38;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3166,333,0 chrXV 227937 . A G 2167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=4.480;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.086;QD=21.04;ReadPosRankSum=1.664;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,100:103:99:2200,243,0 chrXV 227940 . T C 2229 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.85;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2262,249,0 chrXV 228001 . A C 2229 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.23;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2262,246,0 chrXV 228811 . G C 3418.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.8598;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.94;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3418,381,0 chrXV 229235 . A G 7164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.721;DP=309;Dels=0.00;FS=15.850;HaplotypeScore=24.0164;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.063;QD=23.18;ReadPosRankSum=3.822;SB=-3.617e+03 GT:AD:DP:GQ:PL 1/1:5,302:309:99:7164,772,0 chrXV 229291 . C A 5775.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=21.6853;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.01;SB=-3.032e+03 GT:AD:DP:GQ:PL 1/1:0,248:251:99:5775,619,0 chrXV 229462 . T C 6186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.947;DP=286;Dels=0.00;FS=15.285;HaplotypeScore=29.0616;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.495;QD=21.63;ReadPosRankSum=4.168;SB=-3.389e+03 GT:AD:DP:GQ:PL 1/1:6,278:286:99:6186,702,0 chrXV 229649 . G A 5695.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.87;SB=-2.589e+03 GT:AD:DP:GQ:PL 1/1:0,248:249:99:5695,616,0 chrXV 229674 . G A 5228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-1.132;QD=22.44;ReadPosRankSum=-1.597;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:1,230:233:99:5228,562,0 chrXV 229744 . C T 4756.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=9.8275;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.33;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4756,519,0 chrXV 229828 . T G 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=170;Dels=0.01;FS=5.203;HaplotypeScore=19.4997;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.523;QD=19.46;ReadPosRankSum=1.650;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3308,372,0 chrXV 229900 . T C 2590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=4.631;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-1.619;QD=21.23;ReadPosRankSum=1.647;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2623,285,0 chrXV 230045 . C T 555 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=26.5180;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=6.17;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:66:588,66,0 chrXV 230047 . A T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.723;DP=95;Dels=0.00;FS=69.723;HaplotypeScore=27.3067;MLEAC=1;MLEAF=0.500;MQ=51.11;MQ0=0;MQRankSum=-3.385;QD=0.23;ReadPosRankSum=-1.119;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,20:95:52:52,0,413 chrXV 230066 . C T 1383 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=15.03;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1416,153,0 chrXV 230105 . G T 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=4.571;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-0.294;QD=21.96;ReadPosRankSum=1.307;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2361,249,0 chrXV 230282 . C T 4408.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.2357;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=24.63;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4408,468,0 chrXV 230379 . A G 4260.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=3.680;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.386;QD=24.34;ReadPosRankSum=1.692;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4260,462,0 chrXV 230491 . G A 3862.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.2816;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.72;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,165:170:99:3862,403,0 chrXV 230592 . T A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.12;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3527,378,0 chrXV 230614 . G A 3621.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.05;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3621,387,0 chrXV 230706 . G A 4361.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.0748;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.21;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4361,468,0 chrXV 230792 . A T 5549.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.8896;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=26.17;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:5549,592,0 chrXV 230836 . G A 5254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-1.205;QD=22.84;ReadPosRankSum=-1.627;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5254,533,0 chrXV 230852 . T C 4718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=222;Dels=0.00;FS=5.914;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.232;QD=21.25;ReadPosRankSum=2.914;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:3,218:222:99:4718,510,0 chrXV 231024 . T C 4510.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.78;SB=-2.383e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4510,501,0 chrXV 231041 . G A 4619.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=22.21;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4619,493,0 chrXV 231231 . A G 3620.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.3766;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.35;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3620,399,0 chrXV 231541 . C T 4343.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.01;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4343,471,0 chrXV 232193 . A G 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.7880;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.465;QD=22.09;ReadPosRankSum=1.704;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,122:127:99:2838,315,0 chrXV 232456 . T C 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=2.584;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.586;QD=23.95;ReadPosRankSum=2.407;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2763,303,0 chrXV 232710 . A G 4637.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=25.06;SB=-2.265e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4637,510,0 chrXV 232797 . C T 4890.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.7059;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=23.74;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4890,523,0 chrXV 233009 . C G,T 122.81 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=1,1;MLEAF=0.500,0.500;MQ=54.32;MQ0=0;QD=0.64;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/2:0,188,3:192:30:181,48,30,133,0,127 chrXV 233370 . G T 4058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=16.6723;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.298;QD=21.47;ReadPosRankSum=0.559;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4058,447,0 chrXV 233424 . A G 4729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=213;Dels=0.00;FS=6.078;HaplotypeScore=9.4627;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-0.066;QD=22.20;ReadPosRankSum=2.948;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:3,209:213:99:4729,516,0 chrXV 233436 . C A 4593.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=4.9879;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.78;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:4593,507,0 chrXV 233724 . G A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.3743;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.67;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3405,357,0 chrXV 234020 . T C 2357 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.4666;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=23.34;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2390,264,0 chrXV 234072 . G C 2349 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=20.43;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2382,267,0 chrXV 234087 . T C 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=7.697;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.510;QD=20.35;ReadPosRankSum=2.370;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2536,282,0 chrXV 234731 . A G 2891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.629;QD=21.41;ReadPosRankSum=1.655;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2924,330,0 chrXV 234932 . A T 3891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=165;Dels=0.00;FS=5.916;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.605;QD=23.58;ReadPosRankSum=1.605;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3891,417,0 chrXV 235143 . C T 5712.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=20.9655;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=23.13;SB=-2.938e+03 GT:AD:DP:GQ:PL 1/1:0,244:247:99:5712,627,0 chrXV 235233 . A C 4224.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=14.3194;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=19.83;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4224,459,0 chrXV 235374 . A G 4153.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.920;DP=241;Dels=0.01;FS=45.875;HaplotypeScore=30.0614;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;MQRankSum=-2.428;QD=17.23;ReadPosRankSum=5.668;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:13,226:239:99:4153,431,0 chrXV 235401 . G A 1943.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.554;DP=373;Dels=0.00;FS=8.563;HaplotypeScore=27.5103;MLEAC=1;MLEAF=0.500;MQ=43.53;MQ0=0;MQRankSum=-4.920;QD=5.21;ReadPosRankSum=-10.814;SB=-1.241e+03 GT:AD:DP:GQ:PL 0/1:217,153:373:99:1973,0,1561 chrXV 235404 . G A 1649.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.281;DP=369;Dels=0.00;FS=7.884;HaplotypeScore=22.6269;MLEAC=1;MLEAF=0.500;MQ=43.48;MQ0=0;MQRankSum=-6.290;QD=4.47;ReadPosRankSum=-12.446;SB=-1.136e+03 GT:AD:DP:GQ:PL 0/1:228,140:369:99:1679,0,1805 chrXV 235407 . G A 1343.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.162;DP=374;Dels=0.00;FS=6.293;HaplotypeScore=24.5459;MLEAC=1;MLEAF=0.500;MQ=44.00;MQ0=0;MQRankSum=-6.732;QD=3.59;ReadPosRankSum=-13.669;SB=-1.006e+03 GT:AD:DP:GQ:PL 0/1:238,134:374:99:1373,0,1982 chrXV 235617 . G A 5570.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=18.0737;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=22.28;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,247:250:99:5570,609,0 chrXV 235775 . C T 4887.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=20.3348;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.42;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4887,520,0 chrXV 235950 . T C 3438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=164;Dels=0.00;FS=7.131;HaplotypeScore=5.5888;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=1.440;QD=20.96;ReadPosRankSum=2.404;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3438,378,0 chrXV 235959 . C T 3542.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.60;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3542,381,0 chrXV 236904 . G A 4503.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.8273;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=25.44;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4503,478,0 chrXV 236979 . G A 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.972;DP=236;Dels=0.00;FS=14.934;HaplotypeScore=6.3069;MLEAC=1;MLEAF=0.500;MQ=42.44;MQ0=0;MQRankSum=-5.260;QD=0.09;ReadPosRankSum=-7.421;SB=-1.094e+03 GT:AD:DP:GQ:PL 0/1:129,107:236:51:51,0,1862 chrXV 236982 . A G 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.554;DP=235;Dels=0.00;FS=13.341;HaplotypeScore=17.7569;MLEAC=1;MLEAF=0.500;MQ=42.21;MQ0=0;MQRankSum=-3.172;QD=0.09;ReadPosRankSum=-6.111;SB=-1.098e+03 GT:AD:DP:GQ:PL 0/1:125,109:235:51:51,0,1908 chrXV 236985 . A G 1733.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.448;DP=244;Dels=0.00;FS=11.691;HaplotypeScore=27.4764;MLEAC=1;MLEAF=0.500;MQ=43.13;MQ0=0;MQRankSum=2.165;QD=7.10;ReadPosRankSum=5.197;SB=-8.340e+02 GT:AD:DP:GQ:PL 0/1:123,121:244:59:1763,0,59 chrXV 236994 . G A 1553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=242;Dels=0.00;FS=1.337;HaplotypeScore=31.4590;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;MQRankSum=0.437;QD=6.42;ReadPosRankSum=-3.329;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:9,233:242:99:1586,154,0 chrXV 236997 . A G 864.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.951;DP=238;Dels=0.00;FS=18.163;HaplotypeScore=28.7132;MLEAC=1;MLEAF=0.500;MQ=42.93;MQ0=0;MQRankSum=-1.100;QD=3.63;ReadPosRankSum=-3.862;SB=-4.780e+02 GT:AD:DP:GQ:PL 0/1:152,86:238:99:894,0,216 chrXV 237009 . G A 577.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.894;DP=236;Dels=0.00;FS=9.647;HaplotypeScore=15.4964;MLEAC=1;MLEAF=0.500;MQ=43.48;MQ0=0;MQRankSum=-4.629;QD=2.44;ReadPosRankSum=-8.037;SB=-3.480e+02 GT:AD:DP:GQ:PL 0/1:172,64:236:99:607,0,298 chrXV 237099 . C T 3418.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=17.71;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3418,363,0 chrXV 237118 . A T 3299.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=17.83;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3299,363,0 chrXV 237471 . A C 3979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=171;Dels=0.00;FS=2.987;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.048;QD=23.27;ReadPosRankSum=2.363;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3979,441,0 chrXV 237769 . G C 3689.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.1445;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=23.06;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3689,408,0 chrXV 238432 . C T 1770 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=25.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1803,192,0 chrXV 238504 . C A 1623 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1656,174,0 chrXV 238554 . T C 2993 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.7123;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.57;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3026,336,0 chrXV 238753 . A G 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=176;Dels=0.00;FS=5.625;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.411;QD=21.82;ReadPosRankSum=2.937;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:3840,426,0 chrXV 238924 . A C 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=3.489;HaplotypeScore=14.3012;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.605;QD=23.68;ReadPosRankSum=1.668;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3884,432,0 chrXV 238980 . A C 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=3.661;HaplotypeScore=14.1520;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.562;QD=22.50;ReadPosRankSum=1.709;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3397,375,0 chrXV 239101 . T C 4719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.0082;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.153;QD=24.32;ReadPosRankSum=1.678;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:1,192:194:99:4719,534,0 chrXV 239265 . G T 4731.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4731,502,0 chrXV 239353 . C T 3182 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3215,348,0 chrXV 239479 . T G 3664.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=157;Dels=0.00;FS=3.267;HaplotypeScore=11.9268;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.585;QD=23.34;ReadPosRankSum=1.688;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3664,396,0 chrXV 240089 . T C 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=190;Dels=0.00;FS=9.454;HaplotypeScore=5.8902;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-0.271;QD=16.36;ReadPosRankSum=2.952;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:3,186:190:99:3142,354,0 chrXV 240094 . G A 3597.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.83;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3597,393,0 chrXV 240194 . T A 5044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=209;Dels=0.00;FS=2.987;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.595;QD=24.13;ReadPosRankSum=2.402;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:5044,549,0 chrXV 240239 . T A 4673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.415;DP=195;Dels=0.00;FS=8.408;HaplotypeScore=12.6511;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.445;QD=23.96;ReadPosRankSum=3.280;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:4,191:195:99:4673,496,0 chrXV 240393 . T C 3799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=169;Dels=0.00;FS=4.875;HaplotypeScore=10.8687;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.830;QD=22.48;ReadPosRankSum=1.671;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3799,417,0 chrXV 240538 . C T 2609 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2642,279,0 chrXV 240750 . A G 3935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=165;Dels=0.00;FS=7.431;HaplotypeScore=14.3864;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.037;QD=23.85;ReadPosRankSum=2.420;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3935,438,0 chrXV 240880 . G A 3715.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.51;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3715,396,0 chrXV 241147 . A C 3393.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=23.40;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3393,366,0 chrXV 241190 . A C 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=0.352;QD=21.01;ReadPosRankSum=1.680;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,132:138:99:2932,327,0 chrXV 241207 . T G 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=3.222;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=1.025;QD=21.09;ReadPosRankSum=1.661;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3155,351,0 chrXV 241259 . A G 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=147;Dels=0.00;FS=6.477;HaplotypeScore=9.8555;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-1.229;QD=21.63;ReadPosRankSum=2.416;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3212,354,0 chrXV 241442 . C G 1501 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1534,168,0 chrXV 241632 . A G 1932 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9672;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1965,210,0 chrXV 241704 . A G 1148 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1181,126,0 chrXV 241848 . A G 2919 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=13.7023;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.13;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,141:145:99:2952,333,0 chrXV 241911 . A G 2979 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.28;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3012,330,0 chrXV 242133 . C T 6740.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=19.1117;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:6740,721,0 chrXV 242259 . A G 4855.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=6.5354;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.659;QD=21.39;ReadPosRankSum=1.671;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:1,225:227:99:4855,540,0 chrXV 242267 . T C 4982.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=239;Dels=0.00;FS=3.828;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=0.819;QD=20.85;ReadPosRankSum=1.718;SB=-2.510e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:4982,546,0 chrXV 242641 . C G 2483 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.41;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2516,279,0 chrXV 242786 . C T 1887 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.0311;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=18.87;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,96:100:99:1920,204,0 chrXV 243006 . C T 2033 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.41;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2066,225,0 chrXV 243095 . T C 2870 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.15;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2903,327,0 chrXV 243211 . A G 2440 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.18;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2473,273,0 chrXV 243303 . T C 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.357;QD=23.66;ReadPosRankSum=1.646;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2872,315,0 chrXV 243335 . C G 2869 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=23.14;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2902,315,0 chrXV 243517 . A G 4175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=4.795;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.010;QD=22.94;ReadPosRankSum=1.713;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4175,474,0 chrXV 244677 . A G 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.030;QD=21.53;ReadPosRankSum=1.712;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3703,405,0 chrXV 245491 . G C 3886.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.33;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3886,426,0 chrXV 245550 . G A 4200.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.8024;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.14;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4200,447,0 chrXV 245875 . G C 3152 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.68;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:3185,354,0 chrXV 245956 . G A 2587 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2620,279,0 chrXV 246022 . T C 2767 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.25;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2800,309,0 chrXV 246067 . A G 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.727;DP=108;Dels=0.00;FS=6.116;HaplotypeScore=5.0172;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.368;QD=22.06;ReadPosRankSum=2.897;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:3,104:108:99:2415,267,0 chrXV 246081 . G A 2388 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.88;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2421,258,0 chrXV 246679 . G A 3463.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.72;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3463,369,0 chrXV 246993 . T C 4677.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.7441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4677,522,0 chrXV 247083 . G A 4128.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.9463;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.28;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4128,441,0 chrXV 247438 . A T 2940 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.30;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2973,312,0 chrXV 248309 . T C 2456 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.9254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2489,276,0 chrXV 248365 . C G 2649 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.08;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2682,294,0 chrXV 249830 . T C 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=136;Dels=0.00;FS=2.736;HaplotypeScore=8.2750;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.165;QD=22.39;ReadPosRankSum=2.395;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:2,132:136:99:3078,342,0 chrXV 250259 . G A 3716.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.5752;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.13;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3716,405,0 chrXV 250527 . C T 4177.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4177,444,0 chrXV 251045 . T C 2389 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.75;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2422,264,0 chrXV 251243 . G A 1909 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1942,213,0 chrXV 251838 . G A 2918 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2951,312,0 chrXV 252485 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.7742;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.36;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3524,396,0 chrXV 252563 . G T 2994 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0414;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.68;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3027,324,0 chrXV 253651 . T C 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.088;DP=164;Dels=0.00;FS=2.965;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=2.208;QD=22.85;ReadPosRankSum=2.404;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3748,414,0 chrXV 253916 . A G 3524.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.36;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3524,390,0 chrXV 253929 . C A 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=0.445;QD=19.52;ReadPosRankSum=1.656;SB=-2.390e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3573,396,0 chrXV 253930 . A C 3570.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=19.62;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3570,396,0 chrXV 254016 . C T 2385 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.56;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2418,261,0 chrXV 254203 . T A 2391 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=21.74;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2424,264,0 chrXV 254649 . C T 1788 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.55;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1821,204,0 chrXV 254857 . C G 1032 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.9633;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=22.93;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,42:45:99:1065,120,0 chrXV 254962 . T C 1828 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=21.76;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1861,207,0 chrXV 254966 . C T 1819 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=21.15;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1852,198,0 chrXV 254975 . A T 1700 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=20.00;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1733,186,0 chrXV 255018 . T C 1617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;MQRankSum=-0.990;QD=15.55;ReadPosRankSum=2.913;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:3,101:104:99:1650,180,0 chrXV 255031 . T C 2025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;MQRankSum=-0.189;QD=18.41;ReadPosRankSum=1.669;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2058,225,0 chrXV 255070 . A G 2273 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=16.96;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2306,255,0 chrXV 255071 . T C 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=134;Dels=0.00;FS=2.946;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=0.211;QD=16.40;ReadPosRankSum=2.413;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2230,249,0 chrXV 255163 . G A 3763.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=23.09;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3763,405,0 chrXV 255181 . A G 3669.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=3.314;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=0.627;QD=22.51;ReadPosRankSum=1.690;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3669,411,0 chrXV 255268 . G A 4101.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.3336;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=23.30;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4101,462,0 chrXV 256322 . A C 2474 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=19.03;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2507,285,0 chrXV 256343 . T C 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=152;Dels=0.00;FS=3.038;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;MQRankSum=-0.428;QD=17.05;ReadPosRankSum=2.401;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2624,291,0 chrXV 256353 . C T 2678 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=17.17;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2711,300,0 chrXV 256359 . G A 2673 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=17.03;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2706,291,0 chrXV 256395 . C T 2628 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=17.06;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2661,285,0 chrXV 256446 . C T 2003 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=19.64;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2036,222,0 chrXV 256457 . A G 1931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=101;Dels=0.00;FS=6.423;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=-0.283;QD=19.12;ReadPosRankSum=2.351;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:2,98:101:99:1964,216,0 chrXV 256963 . G A 5304.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=4.3365;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=20.96;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:5304,565,0 chrXV 256969 . C A 5630.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=7.6466;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.93;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,268:269:99:5630,595,0 chrXV 257252 . A G 4384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.364;QD=21.70;ReadPosRankSum=1.628;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4384,483,0 chrXV 257356 . C T 3605.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=19.28;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:3605,393,0 chrXV 257374 . T C 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=185;Dels=0.00;FS=9.977;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-0.498;QD=18.49;ReadPosRankSum=2.423;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3420,372,0 chrXV 257554 . C T 3284.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.65;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3284,351,0 chrXV 257615 . A G 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=137;Dels=0.00;FS=3.075;HaplotypeScore=14.4299;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.229;QD=21.28;ReadPosRankSum=1.681;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2948,324,0 chrXV 257954 . T C 4484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=208;Dels=0.00;FS=3.543;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.733;QD=21.56;ReadPosRankSum=1.715;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4484,492,0 chrXV 257968 . C T 4508.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=21.36;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4508,475,0 chrXV 257986 . A G 4107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.723;DP=215;Dels=0.00;FS=5.944;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.573;QD=19.10;ReadPosRankSum=2.948;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:3,211:215:99:4107,450,0 chrXV 258043 . C T 4701.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=17.0860;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.60;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4701,519,0 chrXV 258539 . G C 3822.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3822,423,0 chrXV 258788 . T C 5215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=225;Dels=0.00;FS=2.967;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.420;QD=23.18;ReadPosRankSum=2.373;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:2,223:225:99:5215,573,0 chrXV 258913 . A G 5232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=15.0702;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.562;QD=23.15;ReadPosRankSum=1.686;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:5232,585,0 chrXV 259315 . C T 4190.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.1138;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.39;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4190,453,0 chrXV 259411 . G A 3617.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.80;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3617,387,0 chrXV 259644 . T G 4466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.299;DP=185;Dels=0.00;FS=2.636;HaplotypeScore=12.6178;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.617;QD=24.14;ReadPosRankSum=2.051;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4466,471,0 chrXV 259706 . A G 4121.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=187;Dels=0.00;FS=8.828;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-0.808;QD=22.04;ReadPosRankSum=2.384;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4121,456,0 chrXV 259721 . C T 3769.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=19.84;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,187:190:99:3769,397,0 chrXV 259741 . A G 3755.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=19.66;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3755,417,0 chrXV 259779 . G A 3164 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=16.48;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3197,351,0 chrXV 259780 . G A 3270.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=17.21;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3270,354,0 chrXV 259797 . G A 3491.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.0601;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=17.81;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3491,384,0 chrXV 259967 . T C 4235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=187;Dels=0.00;FS=3.695;HaplotypeScore=16.7652;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-1.002;QD=22.65;ReadPosRankSum=1.657;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4235,465,0 chrXV 260018 . T C 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=3.289;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.206;QD=23.29;ReadPosRankSum=1.713;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4122,462,0 chrXV 260138 . A G 2775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=1.097;QD=21.02;ReadPosRankSum=1.653;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2808,303,0 chrXV 260153 . T C 2761 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.45;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2794,306,0 chrXV 260285 . T C 3180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=149;Dels=0.00;FS=3.035;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.008;QD=21.34;ReadPosRankSum=2.334;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3213,366,0 chrXV 260340 . A G 3343.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1793;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=24.05;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3343,360,0 chrXV 260366 . G A 3184 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=24.68;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3217,351,0 chrXV 260399 . G A 2901 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=25.23;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2934,312,0 chrXV 260576 . A G 3941.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.33;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3941,432,0 chrXV 260613 . T G 3646.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.93;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3646,405,0 chrXV 260759 . A G 3492.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.28;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3492,384,0 chrXV 260837 . A G 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.415;QD=22.76;ReadPosRankSum=1.703;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2810,312,0 chrXV 260864 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.1402;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-1.541;QD=23.05;ReadPosRankSum=1.708;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:3389,372,0 chrXV 260906 . T C 3073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=136;Dels=0.00;FS=7.149;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.895;QD=22.60;ReadPosRankSum=2.413;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3106,354,0 chrXV 261263 . T C 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.7485;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.187;QD=22.05;ReadPosRankSum=1.645;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3506,387,0 chrXV 261556 . C A 4326.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=25.30;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4326,460,0 chrXV 261583 . G A 4359.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.8726;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.19;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4359,462,0 chrXV 261665 . A G 4697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=192;Dels=0.00;FS=2.976;HaplotypeScore=10.1639;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.554;QD=24.46;ReadPosRankSum=2.398;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4697,516,0 chrXV 261696 . T C 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=3.362;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.462;QD=24.62;ReadPosRankSum=1.691;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:4160,453,0 chrXV 262076 . A G 3386.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3386,369,0 chrXV 263223 . T A 2283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=105;Dels=0.00;FS=3.938;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.433;QD=21.74;ReadPosRankSum=1.699;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2316,249,0 chrXV 263259 . C T 2362 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2395,255,0 chrXV 263312 . C T 3400.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3400,360,0 chrXV 263564 . G A 3799.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.74;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3799,414,0 chrXV 263881 . A T 4453.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.8595;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.30;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4453,483,0 chrXV 264596 . A G 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=3.838;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.644;QD=22.87;ReadPosRankSum=1.646;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2823,309,0 chrXV 264888 . G A 2135 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.4637;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.95;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2168,231,0 chrXV 264924 . A C 1967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.742;QD=20.07;ReadPosRankSum=1.697;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2000,222,0 chrXV 264971 . T G 2664 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2697,297,0 chrXV 265232 . T A 2039 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2072,219,0 chrXV 265602 . C T 4334.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.18;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4334,465,0 chrXV 265983 . A G 3733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.283;QD=22.90;ReadPosRankSum=1.711;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3733,414,0 chrXV 266654 . T C 3123 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.31;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3156,345,0 chrXV 266897 . G A 2256 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.02;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2289,246,0 chrXV 266963 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.41;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2646,285,0 chrXV 266966 . C T 2644 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.50;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2677,285,0 chrXV 267104 . A G 3375.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.50;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3375,366,0 chrXV 267165 . C T 4198.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.2375;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.19;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4198,444,0 chrXV 267577 . G A 4624.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.7702;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.71;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4624,490,0 chrXV 267691 . C A 4464.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.01;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4464,495,0 chrXV 267756 . G A 4428.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.82;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4428,477,0 chrXV 267906 . G C 2932 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=19.95;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2965,333,0 chrXV 267912 . T C 2886 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=18.99;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,150:152:99:2919,321,0 chrXV 267950 . T C 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=6.081;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.305;QD=18.72;ReadPosRankSum=1.637;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,145:148:99:2803,306,0 chrXV 268222 . A G 3932.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.13;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3932,435,0 chrXV 268330 . C T 4041.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.1671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4041,426,0 chrXV 269458 . A C 1686 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=7.81;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:1719,189,0 chrXV 269468 . A G 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=-0.196;QD=9.01;ReadPosRankSum=1.703;SB=-2.377e+03 GT:AD:DP:GQ:PL 1/1:1,239:240:99:2196,240,0 chrXV 269591 . A G 2117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;MQRankSum=0.454;QD=19.42;ReadPosRankSum=2.936;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2150,240,0 chrXV 269647 . C T 1763 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=87.1356;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=0;QD=18.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1796,210,0 chrXV 269686 . T C 1758 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;QD=19.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1791,201,0 chrXV 269696 . T A 1729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=16.335;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;MQRankSum=-0.121;QD=20.10;ReadPosRankSum=1.611;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1762,192,0 chrXV 269873 . A G 3183 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6091;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=25.67;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3216,357,0 chrXV 269941 . C T 2855 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=26.19;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2888,303,0 chrXV 269991 . G A 3096 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.80;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3129,336,0 chrXV 270070 . A G 4044.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.4599;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.95;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,188:193:99:4044,447,0 chrXV 270435 . T C 4503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.871;QD=23.83;ReadPosRankSum=1.659;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4503,498,0 chrXV 270526 . C G 3491.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.5430;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3491,384,0 chrXV 270687 . A G 3709.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.03;FS=0.000;HaplotypeScore=11.1282;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.08;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3709,408,0 chrXV 270735 . T C 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.1988;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;MQRankSum=1.197;QD=22.22;ReadPosRankSum=1.681;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3077,351,0 chrXV 270906 . C T 5219.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.8999;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.71;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5219,556,0 chrXV 271041 . C T 3688.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.924;DP=226;Dels=0.00;FS=14.390;HaplotypeScore=14.5020;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=0.940;QD=16.32;ReadPosRankSum=4.384;SB=-2.971e+03 GT:AD:DP:GQ:PL 1/1:9,217:226:99:3688,385,0 chrXV 271045 . T C 3603.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=220;Dels=0.04;FS=3.200;HaplotypeScore=12.7200;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.878;QD=16.38;ReadPosRankSum=1.634;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:1,210:212:99:3603,405,0 chrXV 271047 . A G 3975.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=219;Dels=0.00;FS=3.028;HaplotypeScore=15.2707;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=0.096;QD=18.15;ReadPosRankSum=2.427;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:2,215:219:99:3975,447,0 chrXV 271365 . T A 4466.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=202;Dels=0.00;FS=11.850;HaplotypeScore=5.5696;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.006;QD=22.11;ReadPosRankSum=2.425;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4466,469,0 chrXV 271388 . C T 4490.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.3064;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.01;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,199:204:99:4490,486,0 chrXV 271450 . C G 2969 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.16;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3002,333,0 chrXV 271727 . G A 2268 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=24.13;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2301,246,0 chrXV 271758 . T C 1841 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=21.66;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1874,213,0 chrXV 271822 . C T 1131 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=16.88;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,62:67:99:1164,132,0 chrXV 271895 . G C 1709 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=21.36;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1742,195,0 chrXV 271898 . G T 1753 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=22.77;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1786,189,0 chrXV 271903 . C T 1653 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=20.41;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1686,180,0 chrXV 271964 . T C 114.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.856;DP=103;Dels=0.00;FS=14.487;HaplotypeScore=93.9352;MLEAC=2;MLEAF=1.00;MQ=34.09;MQ0=0;MQRankSum=-0.610;QD=1.11;ReadPosRankSum=-7.137;SB=-1.151e+02 GT:AD:DP:GQ:PL 1/1:64,37:103:18:147,18,0 chrXV 271974 . T C 960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=32.2369;MLEAC=2;MLEAF=1.00;MQ=35.32;MQ0=0;MQRankSum=-1.487;QD=8.42;ReadPosRankSum=1.701;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:993,117,0 chrXV 271988 . G A 1550 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;QD=12.70;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:1583,168,0 chrXV 272022 . A G 3052 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=19.07;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3085,339,0 chrXV 272201 . G A 4874.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=12.1959;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=22.99;SB=-2.605e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4874,525,0 chrXV 272231 . T C 4649.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=21.42;SB=-2.904e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4649,510,0 chrXV 272255 . G C 4301.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=19.03;SB=-2.751e+03 GT:AD:DP:GQ:PL 1/1:0,222:226:99:4301,477,0 chrXV 272275 . T C 3996.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.41;SB=-2.731e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:3996,438,0 chrXV 272573 . A G 3820.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=16.1225;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.553;QD=20.21;ReadPosRankSum=1.658;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3820,429,0 chrXV 272726 . A G 4564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.700;DP=200;Dels=0.00;FS=17.890;HaplotypeScore=11.7988;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.522;QD=22.82;ReadPosRankSum=3.779;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:5,193:200:99:4564,498,0 chrXV 273885 . C G 4597.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.99;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,195:200:99:4597,525,0 chrXV 274354 . A C 5533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=-0.613;QD=21.45;ReadPosRankSum=1.651;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:1,256:258:99:5533,603,0 chrXV 274546 . G T 4142.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=5.5329;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=0;QD=20.40;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4142,433,0 chrXV 274550 . T G 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=196;Dels=0.00;FS=4.035;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=0;MQRankSum=1.697;QD=19.00;ReadPosRankSum=1.679;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:3724,414,0 chrXV 274565 . A G 3057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=182;Dels=0.00;FS=2.582;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.57;MQ0=0;MQRankSum=-1.991;QD=16.80;ReadPosRankSum=2.423;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:3090,348,0 chrXV 274586 . A G 2386 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=0;QD=16.69;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2419,267,0 chrXV 274592 . T C 1927 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=5.161;HaplotypeScore=3.5043;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;MQRankSum=-1.732;QD=15.05;ReadPosRankSum=1.705;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:1960,225,0 chrXV 274593 . A G 1989 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.2930;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=15.54;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2022,228,0 chrXV 274608 . C T 2294 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.8743;MLEAC=2;MLEAF=1.00;MQ=37.24;MQ0=0;QD=15.93;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2327,261,0 chrXV 274651 . G C 3096 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=18.99;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3129,336,0 chrXV 274657 . C T 3350.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=20.18;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3350,366,0 chrXV 274788 . G A 191.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=118.9768;MLEAC=2;MLEAF=1.00;MQ=37.98;MQ0=0;QD=1.37;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:27:224,27,0 chrXV 274793 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=130.1111;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;QD=14.67;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2234,237,0 chrXV 274962 . C T 4234.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=21.49;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4234,453,0 chrXV 275073 . T C 5202.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.77;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5202,567,0 chrXV 275863 . A T 6253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=258;Dels=0.00;FS=11.502;HaplotypeScore=18.2885;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.014;QD=24.24;ReadPosRankSum=2.392;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:2,256:258:99:6253,670,0 chrXV 276114 . G C 6431.01 PASS AC=2;AF=1.00;AN=2;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.29;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,316:317:99:6431,738,0 chrXV 276153 . T C 5088.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=16.3375;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.35;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:5088,582,0 chrXV 276436 . T C 2893 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.14;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2926,318,0 chrXV 276471 . A G 3365.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.6978;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.87;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3365,372,0 chrXV 276679 . T C 3814.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.61;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3814,420,0 chrXV 276746 . A G 2888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=130;Dels=0.00;FS=3.431;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.826;QD=22.22;ReadPosRankSum=1.679;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2921,321,0 chrXV 276774 . C G 3156 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.38;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3189,354,0 chrXV 277027 . T C 2297 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.15;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2330,258,0 chrXV 277036 . C T 2318 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=19.98;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2351,249,0 chrXV 277085 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.98;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2782,294,0 chrXV 277189 . T C 3030 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.96;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3063,342,0 chrXV 277382 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.19;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3400,360,0 chrXV 277422 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8065;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.98;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3150,333,0 chrXV 277467 . C G 2455 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=23.38;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2488,276,0 chrXV 277667 . C T 1609 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;QD=21.17;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1642,174,0 chrXV 277668 . A T 1650 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=21.43;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1683,180,0 chrXV 277673 . A G 1520 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.403;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;MQRankSum=-0.535;QD=18.77;ReadPosRankSum=1.689;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1553,174,0 chrXV 277699 . C A 1065 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=14.01;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1098,120,0 chrXV 277705 . T C 1176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;MQRankSum=-0.716;QD=15.68;ReadPosRankSum=1.686;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1209,135,0 chrXV 277781 . T C 1714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=3.183;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-0.067;QD=22.26;ReadPosRankSum=1.687;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1747,189,0 chrXV 277802 . C T 1807 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=22.59;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1840,195,0 chrXV 277803 . C T 1825 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=23.10;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1858,195,0 chrXV 277819 . T A 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.227;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=-1.098;QD=19.73;ReadPosRankSum=1.690;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1651,183,0 chrXV 277905 . T C 1840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;MQRankSum=-0.466;QD=19.78;ReadPosRankSum=1.546;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1873,207,0 chrXV 277941 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=21.83;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2915,312,0 chrXV 278142 . G A 3555.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.52;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3555,384,0 chrXV 278259 . G A 2208 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.65;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2241,243,0 chrXV 278268 . G A 2211 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=22.79;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2244,243,0 chrXV 278358 . A G 2306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.536;QD=20.23;ReadPosRankSum=1.671;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2339,261,0 chrXV 279264 . T C 3902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.674;QD=23.37;ReadPosRankSum=0.259;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3902,435,0 chrXV 279324 . T C 3660.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=169;Dels=0.00;FS=6.694;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.651;QD=21.66;ReadPosRankSum=2.362;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3660,399,0 chrXV 279344 . A C 3630.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.63;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3630,396,0 chrXV 279396 . A C 4606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=210;Dels=0.00;FS=10.503;HaplotypeScore=13.4847;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.587;QD=21.93;ReadPosRankSum=2.918;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:3,205:210:99:4606,504,0 chrXV 279465 . T G 5080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=214;Dels=0.00;FS=5.699;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.826;QD=23.74;ReadPosRankSum=2.911;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:3,210:214:99:5080,561,0 chrXV 279501 . A G 4443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=193;Dels=0.00;FS=7.152;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.210;QD=23.02;ReadPosRankSum=2.424;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4443,501,0 chrXV 279807 . T C 3650.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.39;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3650,405,0 chrXV 279819 . G A 3491.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=23.43;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3491,369,0 chrXV 279839 . G A 2895 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.60;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2928,309,0 chrXV 279879 . G A 2808 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.5861;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.91;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2841,300,0 chrXV 279942 . T A 3703.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=16.2749;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.726;QD=24.69;ReadPosRankSum=1.709;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3703,399,0 chrXV 280005 . T C 3663.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.504;QD=24.10;ReadPosRankSum=1.709;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3663,405,0 chrXV 280108 . C T 3741.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.54;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3741,399,0 chrXV 280147 . G A 4143.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.8976;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.95;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4143,444,0 chrXV 280789 . C T 3121 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.0341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3154,345,0 chrXV 280902 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.6818;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3245,360,0 chrXV 281034 . G A 3783.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.0815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3783,399,0 chrXV 281328 . G A 4305.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.19;SB=-2.432e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4305,462,0 chrXV 281493 . G A 3615.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.88;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3615,396,0 chrXV 281524 . C T 4348.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.8407;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.28;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4348,454,0 chrXV 281671 . C G 3077 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.85;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3110,351,0 chrXV 281680 . C T 3410.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.45;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3410,366,0 chrXV 281784 . G C 3356.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.14;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3356,363,0 chrXV 281820 . G C 2915 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.75;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2948,324,0 chrXV 281854 . C T 3440.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.4972;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=24.40;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3440,360,0 chrXV 281915 . C T 2709 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.3082;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=21.50;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2742,294,0 chrXV 281945 . A C 2480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=124;Dels=0.00;FS=2.589;HaplotypeScore=5.4223;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=-1.517;QD=20.00;ReadPosRankSum=2.943;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:3,120:124:99:2513,279,0 chrXV 281955 . G T 2660 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=21.28;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2693,285,0 chrXV 282038 . A G 2535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.819;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.294;QD=23.69;ReadPosRankSum=1.699;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2568,291,0 chrXV 282101 . A G 2822 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=25.20;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2855,315,0 chrXV 282364 . T G 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.906;QD=23.39;ReadPosRankSum=1.692;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:4047,438,0 chrXV 282703 . C T 4647.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=13.5784;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.71;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4647,490,0 chrXV 283315 . A G 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=151;Dels=0.00;FS=6.978;HaplotypeScore=9.5887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.965;QD=22.42;ReadPosRankSum=2.318;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3386,375,0 chrXV 283744 . G A 6116.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=12.8989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:6116,652,0 chrXV 284515 . C T 3293.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.20;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3293,348,0 chrXV 284521 . A T 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.693;QD=20.04;ReadPosRankSum=1.710;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3240,357,0 chrXV 284983 . A G 5559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=240;Dels=0.00;FS=3.619;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=1.352;QD=23.16;ReadPosRankSum=1.703;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:1,236:240:99:5559,606,0 chrXV 285010 . A G 5410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=243;Dels=0.00;FS=3.668;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-1.474;QD=22.26;ReadPosRankSum=1.675;SB=-2.747e+03 GT:AD:DP:GQ:PL 1/1:1,241:243:99:5410,606,0 chrXV 285417 . G A 4505.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.3579;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.75;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4505,475,0 chrXV 285657 . A G 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=123;Dels=0.00;FS=8.532;HaplotypeScore=6.7495;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=1.179;QD=20.31;ReadPosRankSum=2.046;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:2531,282,0 chrXV 285666 . A G 2510 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6398;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.31;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2543,282,0 chrXV 285839 . A G 3328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.7333;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.403;QD=22.79;ReadPosRankSum=1.685;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3328,366,0 chrXV 286005 . C G 3510.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,152:158:99:3510,390,0 chrXV 286104 . T A 3093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=1.356;QD=23.98;ReadPosRankSum=1.678;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3126,324,0 chrXV 286143 . G A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=25.05;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3432,360,0 chrXV 286242 . G A 4269.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=15.5275;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.83;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4269,451,0 chrXV 286319 . A C 5138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=17.6318;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.943;QD=21.59;ReadPosRankSum=1.659;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,236:238:99:5138,582,0 chrXV 286370 . T C 4685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.371;DP=215;Dels=0.00;FS=5.240;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-0.742;QD=21.79;ReadPosRankSum=3.403;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:4,211:215:99:4685,513,0 chrXV 286377 . T C 4586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=218;Dels=0.00;FS=5.434;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.912;QD=21.04;ReadPosRankSum=2.903;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:3,215:218:99:4586,507,0 chrXV 286414 . T C 4575.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.0373;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.00;SB=-2.654e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4575,501,0 chrXV 286504 . T A 4835.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=210;Dels=0.00;FS=4.393;HaplotypeScore=18.4457;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.649;QD=23.02;ReadPosRankSum=1.715;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4835,511,0 chrXV 286630 . G A 4406.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=21.3694;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.37;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4406,468,0 chrXV 286759 . A G 3499.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=16.1782;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.88;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3499,393,0 chrXV 286903 . C T 3998.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3998,426,0 chrXV 286975 . C T 2804 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=16.2973;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.34;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2837,300,0 chrXV 287386 . A G 7244.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=346;Dels=0.00;FS=2.770;HaplotypeScore=29.4913;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.702;QD=20.94;ReadPosRankSum=2.435;SB=-3.405e+03 GT:AD:DP:GQ:PL 1/1:2,342:346:99:7244,804,0 chrXV 287557 . T A 4630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=218;Dels=0.00;FS=10.614;HaplotypeScore=17.5283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.301;QD=21.24;ReadPosRankSum=2.404;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:4630,501,0 chrXV 287624 . G A 4183.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.3197;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4183,447,0 chrXV 288023 . A T 1501 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.87;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1534,162,0 chrXV 288113 . G A 1394 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.81;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1427,156,0 chrXV 288164 . C T 1143 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.86;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1176,126,0 chrXV 288298 . A G 2297 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.4510;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.74;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2330,261,0 chrXV 288339 . T C 2390 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.98;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2423,267,0 chrXV 288455 . G A 4080.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.6387;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.03;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4080,430,0 chrXV 288781 . G A 3118 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.36;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3151,330,0 chrXV 288813 . A T 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.4863;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.317;QD=23.66;ReadPosRankSum=2.401;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3572,387,0 chrXV 288918 . A G 2315 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3020;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2348,267,0 chrXV 289140 . C T 3653.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3653,390,0 chrXV 289218 . C T 3199 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.22;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3232,348,0 chrXV 289275 . T C 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=3.446;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.357;QD=21.24;ReadPosRankSum=1.688;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3334,372,0 chrXV 289536 . G A 4095.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.5783;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4095,438,0 chrXV 289728 . T C 3290.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3290,363,0 chrXV 289797 . C A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.52;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3654,390,0 chrXV 290259 . A G 3500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.388;DP=217;Dels=0.00;FS=5.220;HaplotypeScore=3.9067;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=1.102;QD=16.13;ReadPosRankSum=3.420;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:4,212:217:99:3500,396,0 chrXV 290268 . G A 3557.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.4687;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=16.78;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:3557,381,0 chrXV 290681 . T C 2156 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=22.69;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2189,240,0 chrXV 290723 . T A 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.997;QD=23.98;ReadPosRankSum=1.697;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2407,264,0 chrXV 290790 . C T 2315 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;QD=16.42;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2348,252,0 chrXV 290808 . A G 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=5.088;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;MQRankSum=-0.829;QD=13.99;ReadPosRankSum=1.708;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2034,222,0 chrXV 290809 . C T 2070 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=41.60;MQ0=0;QD=14.58;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2103,225,0 chrXV 290822 . T G 2225 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=0;QD=13.40;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2258,252,0 chrXV 290826 . C T 2051 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=12.43;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2084,225,0 chrXV 290902 . A T 4247.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.9247;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=23.21;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4247,450,0 chrXV 290908 . C T 4100.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=22.16;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4100,435,0 chrXV 290923 . T C 3957.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=21.27;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3957,435,0 chrXV 291010 . A G 4374.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=21.98;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4374,489,0 chrXV 291280 . G A 4504.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=10.6529;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.98;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,192:196:99:4504,501,0 chrXV 291394 . A G 3632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.9111;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.304;QD=22.01;ReadPosRankSum=1.711;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3632,396,0 chrXV 291478 . G A 4053.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=14.1498;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.89;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4053,438,0 chrXV 291517 . G A 3711.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.5962;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.09;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,172:176:99:3711,399,0 chrXV 291873 . A G 4229.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.49;SB=-2.361e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4229,471,0 chrXV 291910 . A G 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=173;Dels=0.01;FS=3.018;HaplotypeScore=10.0981;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.668;QD=19.31;ReadPosRankSum=2.335;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3341,375,0 chrXV 291912 . C T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.83;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3430,369,0 chrXV 292175 . G A 3072 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.27;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3105,336,0 chrXV 292302 . A G 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=3.407;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.267;QD=22.75;ReadPosRankSum=1.709;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3413,372,0 chrXV 292356 . T C 2985 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.69;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3018,333,0 chrXV 292448 . A C 2971 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.96;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3004,324,0 chrXV 292493 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.04;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3341,369,0 chrXV 292642 . C G 2618 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.57;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2651,300,0 chrXV 292744 . A T 3913.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.62;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3913,432,0 chrXV 292769 . T C 3883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=175;Dels=0.00;FS=10.547;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.000;QD=22.19;ReadPosRankSum=2.913;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:3883,444,0 chrXV 292883 . A G 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=3.680;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=0.675;QD=21.92;ReadPosRankSum=1.665;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,153:157:99:3441,384,0 chrXV 292903 . G A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5134;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.36;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3318,366,0 chrXV 292957 . G C 3565.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=20.85;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3565,396,0 chrXV 292966 . T C 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=180;Dels=0.00;FS=3.008;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-0.269;QD=19.93;ReadPosRankSum=2.408;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:2,176:180:99:3587,399,0 chrXV 293132 . A G 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.332;QD=20.92;ReadPosRankSum=1.661;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3088,339,0 chrXV 293200 . T C 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.906;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-0.998;QD=22.84;ReadPosRankSum=1.673;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2728,300,0 chrXV 293263 . G A 2546 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.72;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2579,276,0 chrXV 293407 . G A 2632 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.07;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2665,291,0 chrXV 294178 . C T 3286.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3286,360,0 chrXV 294323 . C G 3603.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.02;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3603,408,0 chrXV 294330 . G A 3716.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.3481;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=20.99;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3716,390,0 chrXV 294382 . G A 2908 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.7442;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=17.41;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:2941,333,0 chrXV 294448 . T G 4315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=196;Dels=0.00;FS=7.816;HaplotypeScore=12.4152;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.357;QD=22.02;ReadPosRankSum=2.399;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4315,477,0 chrXV 294529 . T C 3434.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.8088;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=18.97;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3434,387,0 chrXV 294547 . C T 3146 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;QD=18.62;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3179,348,0 chrXV 294553 . C T 3173 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.6432;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=18.78;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3206,348,0 chrXV 294636 . A G 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.564;QD=22.97;ReadPosRankSum=1.711;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3813,414,0 chrXV 294723 . T C 3168 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.00;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3201,354,0 chrXV 294776 . T C 4133.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.6224;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=22.71;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4133,459,0 chrXV 294840 . A G 3737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.790;DP=182;Dels=0.00;FS=5.181;HaplotypeScore=13.4140;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.568;QD=20.53;ReadPosRankSum=2.994;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:4,176:182:99:3737,404,0 chrXV 294882 . A G 3797.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.82;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3797,429,0 chrXV 295275 . A G 4146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.353;DP=213;Dels=0.00;FS=16.402;HaplotypeScore=4.8858;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.037;QD=19.46;ReadPosRankSum=3.344;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:4,207:213:99:4146,462,0 chrXV 295276 . A G 4177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=210;Dels=0.00;FS=8.225;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.836;QD=19.89;ReadPosRankSum=2.391;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:2,206:210:99:4177,456,0 chrXV 295611 . C T 4455.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.03;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4455,475,0 chrXV 296459 . G T 3879.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=23.65;SB=-2.147e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3879,409,0 chrXV 296509 . T C 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=3.248;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-1.455;QD=18.82;ReadPosRankSum=1.663;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2856,321,0 chrXV 296577 . A C 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.252;QD=22.27;ReadPosRankSum=1.701;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2483,273,0 chrXV 296690 . G A 4153.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.0490;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=23.87;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:4153,441,0 chrXV 296918 . A C 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0510;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=-1.318;QD=20.99;ReadPosRankSum=1.710;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3338,369,0 chrXV 296955 . C T 2956 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=21.42;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2989,315,0 chrXV 296969 . C T 2722 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.80;MQ0=0;QD=19.87;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2755,291,0 chrXV 296973 . C T 2718 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.73;MQ0=0;QD=19.28;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2751,300,0 chrXV 296990 . A G 2977 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=18.38;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3010,333,0 chrXV 297031 . T C 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;MQRankSum=-1.616;QD=17.69;ReadPosRankSum=1.674;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3199,354,0 chrXV 297046 . G A 3589.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=20.87;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3589,372,0 chrXV 297073 . C T 2926 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=18.64;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2959,321,0 chrXV 297107 . C T 2604 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.19;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2637,276,0 chrXV 297302 . C T 3117 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.59;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3150,345,0 chrXV 297422 . A G 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.207;DP=132;Dels=0.00;FS=2.693;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.158;QD=21.52;ReadPosRankSum=2.375;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2873,318,0 chrXV 297608 . G A 2466 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2499,273,0 chrXV 297818 . A G 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=100;Dels=0.00;FS=6.106;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-2.000;QD=22.33;ReadPosRankSum=2.846;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:3,95:100:99:2266,252,0 chrXV 298223 . A G 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=4.007;HaplotypeScore=4.9255;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.289;QD=21.03;ReadPosRankSum=1.643;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3301,375,0 chrXV 298234 . A G 3493.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.25;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3493,378,0 chrXV 298373 . A G 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.287;QD=22.29;ReadPosRankSum=1.711;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3633,411,0 chrXV 298630 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.37;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2689,282,0 chrXV 298844 . G T 2273 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=22.50;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2306,246,0 chrXV 298850 . T A 2098 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=21.85;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2131,234,0 chrXV 298882 . A G 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=3.033;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.316;QD=21.12;ReadPosRankSum=2.403;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:2,103:106:99:2272,252,0 chrXV 299064 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=16.07;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1592,174,0 chrXV 299136 . A G 2919 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=23.17;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2952,324,0 chrXV 299161 . T G 3014 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=24.11;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3047,336,0 chrXV 299502 . G A 2198 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=24.42;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2231,237,0 chrXV 299731 . G T 2387 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.20;MQ0=0;QD=15.70;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2420,270,0 chrXV 299739 . C T 1855 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;QD=13.95;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1888,207,0 chrXV 299741 . G A 1744 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=13.42;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1777,192,0 chrXV 299751 . G A 1744 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=0;QD=12.55;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1777,195,0 chrXV 299757 . A G 1131 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=11.42;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1164,132,0 chrXV 299759 . A T 1171 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=11.83;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1204,129,0 chrXV 299762 . G C 1135 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=11.46;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1168,132,0 chrXV 299764 . A T 1160 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=11.72;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1193,132,0 chrXV 299765 . G T 1165 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=11.77;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1198,129,0 chrXV 299766 . A T 1202 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=12.14;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1235,132,0 chrXV 299771 . C G 1170 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;MQRankSum=0.696;QD=9.21;ReadPosRankSum=0.805;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:1203,132,0 chrXV 299774 . G A 1148 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=14.5540;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=9.04;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1181,132,0 chrXV 299775 . C A 1201 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=14.5540;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=9.46;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1234,132,0 chrXV 299778 . A G 1125 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.7518;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=0;QD=8.15;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:1158,132,0 chrXV 299793 . G C 1405 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=9.62;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1438,162,0 chrXV 299796 . C A 1632 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=0;QD=10.74;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:1665,180,0 chrXV 299808 . C A 1792 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.24;MQ0=0;QD=11.20;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:1825,198,0 chrXV 299839 . A G 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.5507;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=0;MQRankSum=-0.498;QD=15.08;ReadPosRankSum=1.677;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:2883,321,0 chrXV 299855 . G A 3282.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;QD=17.93;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3282,357,0 chrXV 299876 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;QD=16.06;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3021,336,0 chrXV 299879 . G A 2903 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=16.40;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:2936,327,0 chrXV 299931 . G A 1784 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=5.6212;MLEAC=2;MLEAF=1.00;MQ=37.20;MQ0=0;QD=11.97;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:1817,201,0 chrXV 299935 . G A 1867 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=12.5646;MLEAC=2;MLEAF=1.00;MQ=36.28;MQ0=0;QD=13.43;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1900,216,0 chrXV 299976 . A G 2404 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.0897;MLEAC=2;MLEAF=1.00;MQ=38.08;MQ0=0;QD=17.94;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2437,273,0 chrXV 300004 . G A 2102 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=0;QD=18.12;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2135,240,0 chrXV 300055 . C T 2188 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=21.66;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2221,243,0 chrXV 300097 . A G 2590 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=22.92;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2623,288,0 chrXV 300301 . G T 2753 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2786,297,0 chrXV 300653 . A G 1393 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.62;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1426,162,0 chrXV 300670 . A G 1227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=-1.470;QD=18.59;ReadPosRankSum=1.680;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1260,138,0 chrXV 300865 . T C 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.14;MQ0=0;MQRankSum=1.611;QD=23.41;ReadPosRankSum=2.412;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:2,130:133:99:3146,348,0 chrXV 300887 . C T 2996 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;QD=21.87;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3029,330,0 chrXV 300895 . T A 2672 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=20.71;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2705,291,0 chrXV 300918 . A T 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=154;Dels=0.00;FS=5.035;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=-1.574;QD=20.25;ReadPosRankSum=1.709;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3151,345,0 chrXV 300985 . C T 4589.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.1683;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=23.90;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4589,504,0 chrXV 301024 . A G 3879.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=-1.430;QD=22.42;ReadPosRankSum=1.712;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3879,432,0 chrXV 301075 . T G 2332 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;QD=20.10;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2365,267,0 chrXV 301083 . T C 2314 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=19.45;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2347,258,0 chrXV 301133 . C G 1619 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=17.41;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1652,186,0 chrXV 301153 . G A 1967 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=19.48;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2000,213,0 chrXV 301621 . C G 5084.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=5.8946;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.10;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,226:230:99:5084,576,0 chrXV 301631 . T C 4961.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.2606;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.25;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:4961,540,0 chrXV 301679 . A G 4354.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.73;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4354,474,0 chrXV 302184 . T C 4202.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=15.4170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4202,474,0 chrXV 302844 . T C 3467.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=23.11;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3467,381,0 chrXV 302883 . C T 2562 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=20.50;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2595,282,0 chrXV 303000 . A C 3226.07 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.2908;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.65;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3259,360,0 chrXV 303066 . A T 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=-0.286;QD=19.85;ReadPosRankSum=1.698;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2078,219,0 chrXV 303067 . C T 1980 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=19.04;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2013,222,0 chrXV 303118 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.70;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2186,237,0 chrXV 303222 . A G 1660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.7103;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=1.365;QD=19.53;ReadPosRankSum=1.691;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1693,189,0 chrXV 303785 . A G 4147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=175;Dels=0.00;FS=3.028;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.218;QD=23.70;ReadPosRankSum=2.422;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4147,453,0 chrXV 303924 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.83;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3493,384,0 chrXV 303991 . A T 3734.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.7977;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.77;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3734,405,0 chrXV 304268 . T C 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=155;Dels=0.00;FS=4.022;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.112;QD=22.57;ReadPosRankSum=1.687;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3498,396,0 chrXV 304553 . G A 5613.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=14.4244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-2.748e+03 GT:AD:DP:GQ:PL 1/1:0,251:254:99:5613,598,0 chrXV 304796 . T C 5099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=228;Dels=0.00;FS=8.167;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.359;QD=22.36;ReadPosRankSum=2.427;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:2,220:228:99:5099,555,0 chrXV 304912 . T A 4847.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=267;Dels=0.00;FS=5.498;HaplotypeScore=11.1415;MLEAC=2;MLEAF=1.00;MQ=60.44;MQ0=0;MQRankSum=-0.690;QD=18.15;ReadPosRankSum=1.680;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:1,265:267:99:4847,517,0 chrXV 305296 . G A 5291.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.0141;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.61;SB=-2.627e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5291,565,0 chrXV 305375 . T C 3695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=154;Dels=0.00;FS=3.372;HaplotypeScore=17.2761;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.624;QD=23.99;ReadPosRankSum=1.709;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,149:154:99:3695,405,0 chrXV 305531 . G A 3157 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.63;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3190,348,0 chrXV 305540 . G A 3053 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=20.22;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3086,327,0 chrXV 305852 . A G 3382.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.983;DP=171;Dels=0.00;FS=7.289;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.583;QD=19.78;ReadPosRankSum=4.092;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:6,165:171:99:3382,378,0 chrXV 306086 . C T 2905 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=22.70;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2938,315,0 chrXV 306087 . C T 2891 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=22.24;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2924,315,0 chrXV 306089 . G A 2779 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=21.21;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2812,309,0 chrXV 306427 . C T 3762.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3762,411,0 chrXV 307049 . A G 4131.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.4655;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=23.88;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4131,456,0 chrXV 307849 . A T 2363 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.63;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2396,258,0 chrXV 308195 . A G 2426 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.66;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2459,276,0 chrXV 308212 . G A 2651 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=20.71;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2684,288,0 chrXV 308234 . C T 2229 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=19.22;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2262,243,0 chrXV 308387 . C T 3965.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.9105;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=25.42;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3965,420,0 chrXV 308420 . A C 3177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=141;Dels=0.00;FS=9.904;HaplotypeScore=18.6364;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.863;QD=22.53;ReadPosRankSum=2.892;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:3,137:141:99:3210,357,0 chrXV 308513 . C T 5505.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.1363;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.80;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5505,583,0 chrXV 308552 . G A 5116.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:5116,555,0 chrXV 308645 . G A 3695.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.63;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3695,390,0 chrXV 308792 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.4992;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.45;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3497,369,0 chrXV 308876 . T C 1932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=6.021;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.536;QD=23.00;ReadPosRankSum=1.650;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1965,219,0 chrXV 308969 . G A 2192 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.14;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2225,234,0 chrXV 309104 . A T 807 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.21;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:840,93,0 chrXV 309144 . A G 1763 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.19;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1796,198,0 chrXV 309237 . A G 1302 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.45;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1335,147,0 chrXV 309247 . A C 1264 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.57;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1297,141,0 chrXV 309334 . C T 2923 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.56;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2956,321,0 chrXV 309615 . T C 4079.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=16.5202;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.66;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4079,453,0 chrXV 309869 . T C 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=147;Dels=0.00;FS=3.193;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.736;QD=20.50;ReadPosRankSum=1.708;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3046,336,0 chrXV 310070 . A G 2899 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.7008;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.42;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2932,324,0 chrXV 310224 . A G 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=1.241;QD=23.20;ReadPosRankSum=1.662;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3434,378,0 chrXV 310257 . A G 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=148;Dels=0.00;FS=2.951;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=0.293;QD=19.97;ReadPosRankSum=2.349;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2988,324,0 chrXV 310258 . A G 2904 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.89;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2937,318,0 chrXV 310926 . C T 3488.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.7771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3488,372,0 chrXV 311312 . T C 4941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=209;Dels=0.00;FS=3.010;HaplotypeScore=14.5853;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.874;QD=23.64;ReadPosRankSum=1.698;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:1,205:209:99:4941,549,0 chrXV 311429 . A C 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=229;Dels=0.00;FS=5.898;HaplotypeScore=9.8378;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;MQRankSum=-0.118;QD=18.68;ReadPosRankSum=2.943;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:3,226:229:99:4277,480,0 chrXV 311436 . C T 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=222;Dels=0.00;FS=3.385;HaplotypeScore=3.7290;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;MQRankSum=-1.049;QD=18.74;ReadPosRankSum=-1.176;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:1,217:222:99:4160,434,0 chrXV 311450 . G A 3877.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=18.91;SB=-2.670e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:3877,420,0 chrXV 311489 . G A 3940.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.7880;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.13;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:3940,429,0 chrXV 312454 . A G 4927.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=215;Dels=0.00;FS=2.934;HaplotypeScore=13.1032;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.224;QD=22.92;ReadPosRankSum=2.404;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:2,212:215:99:4927,537,0 chrXV 312534 . T C 4259.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=186;Dels=0.00;FS=3.280;HaplotypeScore=21.8777;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.505;QD=22.90;ReadPosRankSum=1.713;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4259,468,0 chrXV 312575 . C A 4293.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.40;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4293,451,0 chrXV 312666 . A C 4557.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.67;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4557,516,0 chrXV 312832 . C T 2762 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=16.74;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:2795,294,0 chrXV 312919 . A G 3591.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.6892;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.32;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3591,396,0 chrXV 313126 . T C 1875 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.53;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,93:96:99:1908,207,0 chrXV 313924 . T G 3058 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.34;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:3091,339,0 chrXV 313945 . T C 2270 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=19.40;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2303,258,0 chrXV 314041 . A G 2235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=3.918;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=0.621;QD=21.08;ReadPosRankSum=1.699;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2268,255,0 chrXV 314050 . T C 2285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=111;Dels=0.00;FS=2.595;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;MQRankSum=-0.009;QD=20.59;ReadPosRankSum=2.936;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:3,106:111:99:2318,252,0 chrXV 314073 . G T 2679 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.3527;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.26;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2712,288,0 chrXV 314395 . G A 3868.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.25;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3868,426,0 chrXV 314514 . G A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.2302;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.39;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3487,369,0 chrXV 315191 . G C 3694.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=18.4047;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.99;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3694,402,0 chrXV 315627 . T A 1031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.263;DP=72;Dels=0.00;FS=8.146;HaplotypeScore=115.8176;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=0.687;QD=14.32;ReadPosRankSum=1.063;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:5,67:72:99:1064,123,0 chrXV 315691 . A G 1410 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.05;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1443,165,0 chrXV 315748 . T C 2517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=13.7940;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.079;QD=22.68;ReadPosRankSum=2.405;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:2,107:111:99:2550,282,0 chrXV 315837 . A G 3613.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=23.93;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3613,396,0 chrXV 315972 . G A 4734.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.8516;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.82;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:4734,505,0 chrXV 316312 . C A 3620.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.7115;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=20.80;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3620,387,0 chrXV 316327 . A C 2718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=157;Dels=0.00;FS=2.848;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;MQRankSum=-1.667;QD=17.31;ReadPosRankSum=2.418;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:2751,306,0 chrXV 316342 . T C 2623 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.89;MQ0=0;QD=17.60;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2656,294,0 chrXV 316361 . T A 2015 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=0;QD=15.04;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2048,228,0 chrXV 316380 . G A 1938 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=0;QD=14.36;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1971,210,0 chrXV 316412 . C T 747 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.40;MQ0=0;QD=6.73;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:90:780,90,0 chrXV 316425 . C T 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.825;DP=118;Dels=0.00;FS=12.536;HaplotypeScore=252.8695;MLEAC=1;MLEAF=0.500;MQ=32.43;MQ0=0;MQRankSum=-0.696;QD=0.26;ReadPosRankSum=-5.367;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:99,19:118:61:61,0,307 chrXV 316591 . A T 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=132;Dels=0.00;FS=4.607;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=-1.119;QD=20.34;ReadPosRankSum=1.652;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2718,288,0 chrXV 316611 . A G 2144 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=9.0032;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=18.32;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2177,237,0 chrXV 317034 . T A 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=139;Dels=0.00;FS=3.368;HaplotypeScore=13.9859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.308;QD=22.04;ReadPosRankSum=1.657;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3097,336,0 chrXV 317483 . T C 2981 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.40;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3014,333,0 chrXV 317789 . A T 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=121;Dels=0.00;FS=9.114;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.734;QD=20.60;ReadPosRankSum=2.326;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2525,267,0 chrXV 317798 . C T 2732 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6895;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.34;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2765,294,0 chrXV 317899 . G A 4868.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.03;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4868,511,0 chrXV 318136 . C T 4184.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.7530;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.91;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,186:191:99:4184,447,0 chrXV 318341 . G A 3690.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=17.6844;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.50;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,159:164:99:3690,390,0 chrXV 318443 . A G 5930.01 PASS AC=2;AF=1.00;AN=2;DP=296;Dels=0.00;FS=0.000;HaplotypeScore=9.9686;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.03;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,295:295:99:5930,651,0 chrXV 318446 . T A 5844.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=294;Dels=0.00;FS=2.530;HaplotypeScore=5.4859;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-1.645;QD=19.88;ReadPosRankSum=2.969;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:3,290:293:99:5844,631,0 chrXV 318581 . G A 7283.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=20.2757;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.14;SB=-3.374e+03 GT:AD:DP:GQ:PL 1/1:0,324:329:99:7283,807,0 chrXV 318668 . C G 6628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=339;Dels=0.00;FS=3.416;HaplotypeScore=18.0854;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-0.381;QD=19.55;ReadPosRankSum=1.196;SB=-4.022e+03 GT:AD:DP:GQ:PL 1/1:1,335:339:99:6628,732,0 chrXV 318818 . T C 5407.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,247:250:99:5407,603,0 chrXV 319346 . T C 2896 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.70;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:2929,336,0 chrXV 319505 . C T 3913.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3913,414,0 chrXV 319628 . G A 3573.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3573,378,0 chrXV 320015 . C G 2547 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2580,285,0 chrXV 320174 . T G 3031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=135;Dels=0.00;FS=6.013;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-2.301;QD=22.45;ReadPosRankSum=2.873;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:3,131:135:99:3064,333,0 chrXV 320437 . G A 4090.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.49;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4090,432,0 chrXV 320715 . G A 4163.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.87;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4163,447,0 chrXV 320726 . G A 4387.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.97;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4387,468,0 chrXV 321352 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.37;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3512,384,0 chrXV 321368 . A C 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=163;Dels=0.00;FS=10.386;HaplotypeScore=7.5430;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-0.722;QD=21.90;ReadPosRankSum=2.932;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:3,160:163:99:3569,393,0 chrXV 321655 . C G 3441.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=15.1121;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.34;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,148:154:99:3441,384,0 chrXV 321766 . C T 4464.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.78;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,194:196:99:4464,492,0 chrXV 321972 . T C 4131.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.2693;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.18;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4131,453,0 chrXV 321989 . G A 4157.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=4.9564;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.58;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4157,444,0 chrXV 322108 . C T 3574.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.76;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3574,375,0 chrXV 322138 . G T 3458.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.5383;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.03;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3458,372,0 chrXV 322263 . G A 3212.98 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.71;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3246,345,0 chrXV 322341 . A G 2526 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.73;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2559,282,0 chrXV 322691 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.88;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2955,312,0 chrXV 322692 . G A 2888 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.65;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2921,312,0 chrXV 322741 . C T 2657 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=19.39;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2690,288,0 chrXV 322819 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.01;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3520,390,0 chrXV 323130 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.0250;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.548;QD=21.51;ReadPosRankSum=1.687;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3355,366,0 chrXV 323552 . G A 2512 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2545,270,0 chrXV 323813 . C G 3624.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.00;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3624,399,0 chrXV 323974 . A G 3063 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.52;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3096,339,0 chrXV 324302 . T G 1790 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.67;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1823,204,0 chrXV 324679 . T C 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=123;Dels=0.00;FS=3.388;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.837;QD=19.77;ReadPosRankSum=1.674;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,119:123:99:2465,273,0 chrXV 325269 . A C 3137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.624;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.551;QD=24.32;ReadPosRankSum=1.705;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3170,348,0 chrXV 325359 . G A 3124 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3157,348,0 chrXV 325987 . C T 1638 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.75;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1671,174,0 chrXV 326008 . G A 1339 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.95;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1372,147,0 chrXV 326267 . T C 1830 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=40.71;MQ0=0;QD=25.77;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1863,204,0 chrXV 326369 . A G 944 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=0;QD=26.22;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:977,108,0 chrXV 326393 . A G 652 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.83;MQ0=0;QD=22.48;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:78:685,78,0 chrXV 326413 . A G 662 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=22.83;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:78:695,78,0 chrXV 326418 . T C 622 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=21.45;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:75:655,75,0 chrXV 326558 . G A 1044 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.16;MQ0=0;QD=17.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1077,117,0 chrXV 326567 . A C 684 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.19;MQ0=0;MQRankSum=-1.025;QD=13.96;ReadPosRankSum=1.662;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,48:49:81:717,81,0 chrXV 326583 . T A 473 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=0;QD=13.14;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:57:506,57,0 chrXV 326614 . T C 315 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=30.04;MQ0=0;QD=17.50;SB=-7.544e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:39:348,39,0 chrXV 326619 . A T 269 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=0;MQRankSum=-0.714;QD=15.82;ReadPosRankSum=1.531;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:1,16:17:36:302,36,0 chrXV 326653 . T A 72.51 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.58;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:105,12,0 chrXV 326670 . C T 110.13 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;QD=5.01;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:18:143,18,0 chrXV 326691 . A G 482 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;QD=11.48;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:57:515,57,0 chrXV 326879 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=22.79;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2540,285,0 chrXV 326915 . A G 2131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=116;Dels=0.00;FS=3.569;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;MQRankSum=0.567;QD=18.37;ReadPosRankSum=1.672;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2164,243,0 chrXV 326918 . C G 2334 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=20.12;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2367,261,0 chrXV 327002 . C T 2552 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.42;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2585,273,0 chrXV 327020 . T C 2785 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.63;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2818,315,0 chrXV 327197 . T C 2682 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.12;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2715,303,0 chrXV 327845 . T C 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=118;Dels=0.00;FS=12.053;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.785;QD=23.14;ReadPosRankSum=2.906;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:3,114:118:99:2763,303,0 chrXV 327917 . T C 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=4.314;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.911;QD=22.09;ReadPosRankSum=1.706;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3037,330,0 chrXV 328029 . A C 2654 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.93;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2687,297,0 chrXV 328049 . C T 2850 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.09;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2883,312,0 chrXV 328373 . C T 5771.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=9.0809;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.75;SB=-2.856e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5771,642,0 chrXV 328457 . C T 3899.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.20;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3899,412,0 chrXV 328464 . G A 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=187;Dels=0.00;FS=4.794;HaplotypeScore=3.8913;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=1.213;QD=19.13;ReadPosRankSum=0.232;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3577,399,0 chrXV 328719 . C G 2808 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.29;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2841,309,0 chrXV 328747 . C T 3153 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.25;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3186,339,0 chrXV 328791 . C A 2950 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.69;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2983,327,0 chrXV 329046 . A T 2093 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2126,228,0 chrXV 329207 . A G 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=3.643;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.585;QD=24.01;ReadPosRankSum=1.703;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2890,318,0 chrXV 329561 . C G 5592.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,219:223:99:5592,609,0 chrXV 330217 . T C 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=161;Dels=0.00;FS=3.260;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.957;QD=22.68;ReadPosRankSum=0.613;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3652,405,0 chrXV 330566 . A G 4656.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=201;Dels=0.00;FS=6.308;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.485;QD=23.16;ReadPosRankSum=2.413;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4656,522,0 chrXV 330716 . C T 3498.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.8553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3498,372,0 chrXV 331119 . A T 2697 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.05;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2730,300,0 chrXV 331262 . T C 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=3.241;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-1.613;QD=21.64;ReadPosRankSum=1.672;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2543,282,0 chrXV 331265 . C T 2654 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.12;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2687,285,0 chrXV 331409 . G A 3198 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.84;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3231,360,0 chrXV 331520 . T A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4503;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.59;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3762,402,0 chrXV 331655 . T A 4202.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4202,456,0 chrXV 331767 . A G 4430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.335;DP=195;Dels=0.00;FS=8.865;HaplotypeScore=12.5999;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.329;QD=22.72;ReadPosRankSum=3.361;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:4,191:195:99:4430,483,0 chrXV 331895 . T C 3502.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.04;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3502,387,0 chrXV 332096 . A T 3676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=4.063;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.658;QD=23.12;ReadPosRankSum=1.644;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3676,393,0 chrXV 332111 . G A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.91;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3437,366,0 chrXV 332378 . G A 4282.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.75;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4282,459,0 chrXV 332899 . T C 2360 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.26;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2393,258,0 chrXV 332916 . C T 2088 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=21.09;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2121,225,0 chrXV 332923 . A G 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=96;Dels=0.00;FS=5.384;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-0.737;QD=18.72;ReadPosRankSum=2.843;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:3,93:96:99:1830,201,0 chrXV 333273 . C T 2774 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.37;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2807,306,0 chrXV 333311 . A G 2216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=111;Dels=0.01;FS=8.268;HaplotypeScore=14.4512;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.308;QD=19.96;ReadPosRankSum=2.404;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:2,106:110:99:2249,246,0 chrXV 333364 . C G 1725 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.83;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1758,195,0 chrXV 333391 . G C 1567 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=16.67;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1600,177,0 chrXV 333403 . T G 1283 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=13.51;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1316,147,0 chrXV 333897 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=13.5658;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3742,408,0 chrXV 334299 . G A 2355 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.2869;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.61;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2388,252,0 chrXV 334345 . G A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.6214;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.09;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3437,363,0 chrXV 334449 . T C 2868 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6343;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.76;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2901,321,0 chrXV 334869 . C G 3370.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.24;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3370,375,0 chrXV 334998 . G A 2852 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.82;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2885,309,0 chrXV 335001 . A G 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-1.299;QD=19.67;ReadPosRankSum=1.684;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2865,315,0 chrXV 335217 . T A 3886.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.84;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3886,417,0 chrXV 335413 . A G 3850.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=163;Dels=0.00;FS=3.009;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.415;QD=23.62;ReadPosRankSum=2.359;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3850,423,0 chrXV 335493 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=152;Dels=0.00;FS=3.099;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.221;QD=21.25;ReadPosRankSum=1.686;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,148:152:99:3264,369,0 chrXV 335759 . T C 2382 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.53;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2415,267,0 chrXV 336192 . C A 2800 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2833,300,0 chrXV 336579 . G C 3031 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3064,339,0 chrXV 336629 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.64;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3212,342,0 chrXV 336821 . T C 4327.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.14;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4327,480,0 chrXV 337296 . A G 2029 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.05;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2062,228,0 chrXV 337464 . T C 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.965;QD=21.64;ReadPosRankSum=1.679;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2890,321,0 chrXV 337465 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.14;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2933,318,0 chrXV 337546 . A G 4266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=168;Dels=0.00;FS=7.456;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.027;QD=25.39;ReadPosRankSum=1.691;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:1,166:168:99:4266,468,0 chrXV 337635 . C T 3577.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5134;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.01;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3577,390,0 chrXV 337723 . C T 5315.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.6493;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.16;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5315,556,0 chrXV 337772 . C T 5143.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=12.9693;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.48;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5143,547,0 chrXV 338127 . T C 4310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=21.5732;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.589;QD=24.35;ReadPosRankSum=2.394;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4310,471,0 chrXV 338175 . C T 4644.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=9.8506;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.03;SB=-2.821e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:4644,504,0 chrXV 338259 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.7026;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.09;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3247,348,0 chrXV 338412 . G A 3490.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.9337;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.58;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3490,369,0 chrXV 338443 . C T 3405.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.1763;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.98;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3405,360,0 chrXV 338843 . A T 2939 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.29;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2972,327,0 chrXV 339097 . A G 4166.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.2340;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.28;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4166,462,0 chrXV 339568 . A G 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=156;Dels=0.00;FS=2.844;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.039;QD=21.99;ReadPosRankSum=2.418;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3431,372,0 chrXV 339637 . G A 3495.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3495,381,0 chrXV 339946 . A C 2888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=127;Dels=0.00;FS=10.567;HaplotypeScore=7.0697;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.564;QD=22.74;ReadPosRankSum=2.945;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2921,321,0 chrXV 340206 . G T 3095 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=23.81;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3128,339,0 chrXV 340281 . T C 1687 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=53.6873;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.57;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1720,189,0 chrXV 340388 . T C 2326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=4.543;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;MQRankSum=-0.047;QD=20.58;ReadPosRankSum=1.701;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2359,261,0 chrXV 340390 . G A 2411 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=21.34;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2444,261,0 chrXV 340419 . C T 2082 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=17.95;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2115,231,0 chrXV 340430 . G C 2007 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=17.45;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2040,225,0 chrXV 340587 . T G 2033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.698;DP=104;Dels=0.01;FS=3.274;HaplotypeScore=12.3897;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=-0.136;QD=19.55;ReadPosRankSum=1.664;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2066,210,0 chrXV 340588 . T G 2100 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=10.6116;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=20.39;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2133,231,0 chrXV 340625 . T C 2176 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=19.96;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2209,240,0 chrXV 340736 . A G 2045 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2078,228,0 chrXV 340969 . G A 2251 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2284,243,0 chrXV 341165 . G A 2432 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2465,270,0 chrXV 341624 . G C 3183 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.95;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3216,354,0 chrXV 341821 . C A 5991.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.86;SB=-2.507e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5991,660,0 chrXV 342106 . G A 7415.01 PASS AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=28.3759;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-4.044e+03 GT:AD:DP:GQ:PL 1/1:0,336:337:99:7415,796,0 chrXV 343279 . C T 3974.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.4821;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.65;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3974,432,0 chrXV 343319 . T C 4167.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.68;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4167,453,0 chrXV 343337 . A G 4003.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=23.01;SB=-2.282e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4003,441,0 chrXV 343384 . G A 3661.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.17;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3661,396,0 chrXV 343550 . A G 3158 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=19.86;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3191,351,0 chrXV 343697 . G T 4400.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.5398;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4400,480,0 chrXV 343770 . G A 4444.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4444,477,0 chrXV 344263 . G T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.44;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3324,357,0 chrXV 344470 . T A 5645.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=235;Dels=0.00;FS=2.575;HaplotypeScore=12.7476;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.009;QD=24.02;ReadPosRankSum=2.883;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:3,232:235:99:5645,615,0 chrXV 344523 . T C 5213.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=21.63;SB=-2.834e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:5213,582,0 chrXV 344531 . C G 5083.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=4.0748;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.00;SB=-3.042e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:5083,555,0 chrXV 344777 . T C 5789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.217;DP=310;Dels=0.00;FS=3.558;HaplotypeScore=38.5852;MLEAC=2;MLEAF=1.00;MQ=34.43;MQ0=1;MQRankSum=1.573;QD=18.67;ReadPosRankSum=-0.273;SB=-3.444e+03 GT:AD:DP:GQ:PL 1/1:1,304:310:99:5789,626,0 chrXV 344810 . T C 1802.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.080;DP=191;Dels=0.00;FS=107.471;HaplotypeScore=22.0302;MLEAC=1;MLEAF=0.500;MQ=28.22;MQ0=1;MQRankSum=-0.453;QD=9.43;ReadPosRankSum=-1.140;SB=-1.203e+03 GT:AD:DP:GQ:PL 0/1:67,124:191:99:1832,0,507 chrXV 344813 . T C 2741 SnpCluster AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=43.2339;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=1;QD=15.14;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:2774,321,0 chrXV 344820 . T C 1386.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;DP=158;Dels=0.00;FS=10.943;HaplotypeScore=59.4402;MLEAC=1;MLEAF=0.500;MQ=27.67;MQ0=1;MQRankSum=-2.029;QD=8.77;ReadPosRankSum=5.396;SB=-4.870e+02 GT:AD:DP:GQ:PL 0/1:30,128:158:99:1416,0,233 chrXV 344823 . C T 1358.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.011;DP=164;Dels=0.00;FS=20.817;HaplotypeScore=6.4254;MLEAC=1;MLEAF=0.500;MQ=27.75;MQ0=1;MQRankSum=0.696;QD=8.28;ReadPosRankSum=2.777;SB=-3.900e+02 GT:AD:DP:GQ:PL 0/1:33,131:164:99:1388,0,307 chrXV 344846 . T C 451.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;DP=102;Dels=0.00;FS=7.597;HaplotypeScore=11.4271;MLEAC=1;MLEAF=0.500;MQ=28.47;MQ0=2;MQRankSum=0.850;QD=4.42;ReadPosRankSum=7.653;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,33:102:99:481,0,346 chrXV 344849 . T C 912 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=17.3014;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=1;QD=10.73;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:945,102,0 chrXV 344856 . T C 644 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.771;DP=72;Dels=0.00;FS=2.213;HaplotypeScore=31.1868;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=1;MQRankSum=-0.135;QD=8.94;ReadPosRankSum=3.997;SB=-1.537e+02 GT:AD:DP:GQ:PL 1/1:12,60:72:31:677,31,0 chrXV 344859 . C T 674 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.358;DP=75;Dels=0.04;FS=0.000;HaplotypeScore=21.1357;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=1;MQRankSum=1.586;QD=8.99;ReadPosRankSum=0.272;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:4,68:72:37:707,37,0 chrXV 344865 . T A 959 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=24.7636;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=1;MQRankSum=1.582;QD=11.42;ReadPosRankSum=-0.721;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:4,79:84:99:992,105,0 chrXV 344866 . T C 972 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.103;DP=85;Dels=0.00;FS=2.800;HaplotypeScore=25.5523;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=1;MQRankSum=-0.704;QD=11.44;ReadPosRankSum=0.641;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:4,81:85:99:1005,111,0 chrXV 344882 . T C 142.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;DP=196;Dels=0.00;FS=30.282;HaplotypeScore=8.4330;MLEAC=1;MLEAF=0.500;MQ=28.36;MQ0=1;MQRankSum=0.347;QD=0.72;ReadPosRankSum=-1.115;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:162,34:196:99:172,0,1688 chrXV 344901 . G A 2798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=8.4549;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=1;MQRankSum=1.252;QD=10.60;ReadPosRankSum=0.946;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:1,260:264:99:2831,315,0 chrXV 344917 . G A 400.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.972;DP=240;Dels=0.00;FS=72.393;HaplotypeScore=7.4797;MLEAC=1;MLEAF=0.500;MQ=28.30;MQ0=1;MQRankSum=-0.787;QD=1.67;ReadPosRankSum=-3.003;SB=-5.620e+02 GT:AD:DP:GQ:PL 0/1:149,91:240:99:430,0,1810 chrXV 344921 . T C 2840 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=84.1753;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=12.03;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:2873,315,0 chrXV 344928 . T C 1740.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.771;DP=235;Dels=0.00;FS=76.083;HaplotypeScore=245.8618;MLEAC=1;MLEAF=0.500;MQ=28.43;MQ0=0;MQRankSum=0.435;QD=7.40;ReadPosRankSum=6.081;SB=-5.420e+02 GT:AD:DP:GQ:PL 0/1:90,145:235:99:1770,0,413 chrXV 344937 . T A 2119 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.119;DP=233;Dels=0.00;FS=81.613;HaplotypeScore=10.2179;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;MQRankSum=0.680;QD=9.09;ReadPosRankSum=4.378;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:84,145:233:99:2152,231,0 chrXV 344938 . T C 1812.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.180;DP=240;Dels=0.00;FS=104.434;HaplotypeScore=15.7387;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=0;MQRankSum=1.841;QD=7.55;ReadPosRankSum=4.249;SB=-5.860e+02 GT:AD:DP:GQ:PL 0/1:90,150:240:99:1842,0,390 chrXV 344944 . T A 307.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;DP=338;Dels=0.00;FS=89.018;HaplotypeScore=12.3111;MLEAC=1;MLEAF=0.500;MQ=28.46;MQ0=0;MQRankSum=-0.745;QD=0.91;ReadPosRankSum=4.381;SB=-1.370e+02 GT:AD:DP:GQ:PL 0/1:256,82:338:99:337,0,2412 chrXV 344954 . T C 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.564;DP=367;Dels=0.00;FS=91.698;HaplotypeScore=5.2444;MLEAC=1;MLEAF=0.500;MQ=28.48;MQ0=0;MQRankSum=1.568;QD=0.19;ReadPosRankSum=3.385;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:296,71:367:99:101,0,2815 chrXV 344956 . G A 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.225;DP=377;Dels=0.00;FS=95.260;HaplotypeScore=5.2444;MLEAC=1;MLEAF=0.500;MQ=28.47;MQ0=0;MQRankSum=-1.768;QD=0.14;ReadPosRankSum=2.484;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:309,68:377:81:81,0,2778 chrXV 344973 . G A 2604 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=7.6112;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=8.27;SB=-3.422e+03 GT:AD:DP:GQ:PL 1/1:0,309:315:99:2637,297,0 chrXV 344993 . T C 1592 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=235;Dels=0.00;FS=8.175;HaplotypeScore=12.3107;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;MQRankSum=1.071;QD=6.77;ReadPosRankSum=2.429;SB=-2.283e+03 GT:AD:DP:GQ:PL 1/1:2,233:235:99:1625,186,0 chrXV 345000 . T C 1492 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.136;DP=237;Dels=0.00;FS=1.659;HaplotypeScore=14.8449;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;MQRankSum=-1.251;QD=6.30;ReadPosRankSum=1.142;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:7,230:237:99:1525,114,0 chrXV 345003 . C T 1709 SnpCluster AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=10.9600;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=7.30;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:1742,198,0 chrXV 345025 . G A 1136.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.295;DP=216;Dels=0.00;FS=51.019;HaplotypeScore=6.7780;MLEAC=1;MLEAF=0.500;MQ=28.24;MQ0=0;MQRankSum=-0.421;QD=5.26;ReadPosRankSum=8.118;SB=-1.124e+03 GT:AD:DP:GQ:PL 0/1:68,148:216:99:1166,0,269 chrXV 345029 . T C 1648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=182;Dels=0.00;FS=3.004;HaplotypeScore=76.5704;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=0;MQRankSum=0.305;QD=9.05;ReadPosRankSum=2.422;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:1681,192,0 chrXV 345044 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=8.989;HaplotypeScore=89.8853;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;MQRankSum=1.295;QD=0.12;ReadPosRankSum=1.329;SB=-2.958e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:6:43,6,0 chrXV 345052 . T A 940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.089;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;MQRankSum=1.339;QD=9.69;ReadPosRankSum=0.768;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:973,108,0 chrXV 345062 . T C 731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.262;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8466;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;MQRankSum=-0.321;QD=9.02;ReadPosRankSum=0.877;SB=-6.601e+01 GT:AD:DP:GQ:PL 1/1:1,80:81:87:764,87,0 chrXV 345064 . G A 720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.087;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.8533;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;MQRankSum=-0.217;QD=8.89;ReadPosRankSum=0.823;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:1,79:81:84:753,84,0 chrXV 345081 . G A 752 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=7.45;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:84:785,84,0 chrXV 345087 . C T 775 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.134;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;MQRankSum=0.031;QD=7.05;ReadPosRankSum=-1.354;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:1,109:110:87:808,87,0 chrXV 345090 . A G 730 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.543;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;MQRankSum=-1.228;QD=6.64;ReadPosRankSum=-1.606;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:1,109:110:90:763,90,0 chrXV 345097 . G A 727 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=6.92;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:81:760,81,0 chrXV 345100 . G T 615 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.997;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;MQRankSum=1.487;QD=6.21;ReadPosRankSum=-1.207;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:69:648,69,0 chrXV 345101 . T C 627 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.732;QD=6.27;ReadPosRankSum=1.697;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:75:660,75,0 chrXV 345108 . T C 688 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.151;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.2489;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=0;MQRankSum=-1.724;QD=5.64;ReadPosRankSum=0.776;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:2,120:122:81:721,81,0 chrXV 345111 . C T 799 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=9.8223;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=6.15;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:93:832,93,0 chrXV 345165 . C T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=0;QD=14.70;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,230:231:99:3396,372,0 chrXV 345183 . C T 4145.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=44.07;MQ0=0;QD=15.82;SB=-3.203e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:4145,444,0 chrXV 345678 . C T 4417.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=18.72;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:4417,474,0 chrXV 345689 . T C 4503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.635;DP=236;Dels=0.00;FS=11.175;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.341;QD=19.08;ReadPosRankSum=1.568;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:2,232:236:99:4503,465,0 chrXV 345834 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=17.4671;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.52;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3572,390,0 chrXV 345954 . C T 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.006;DP=127;Dels=0.00;FS=4.213;HaplotypeScore=8.2106;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.643;QD=21.25;ReadPosRankSum=0.978;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,123:127:99:2732,277,0 chrXV 345964 . T C 2382 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.27;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2415,267,0 chrXV 346309 . A G 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=154;Dels=0.00;FS=6.465;HaplotypeScore=15.9828;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.236;QD=20.40;ReadPosRankSum=2.385;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:2,149:154:99:3174,363,0 chrXV 346416 . T C 5420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=272;Dels=0.00;FS=13.796;HaplotypeScore=5.1116;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-0.059;QD=19.93;ReadPosRankSum=2.945;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:3,269:272:99:5420,594,0 chrXV 346417 . G A 5527.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=5.8568;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=20.17;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,272:274:99:5527,595,0 chrXV 346438 . A G 6055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=11.3330;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.605;QD=20.88;ReadPosRankSum=1.720;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:1,288:290:99:6055,672,0 chrXV 347064 . A G 5109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=213;Dels=0.00;FS=3.014;HaplotypeScore=14.6801;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.192;QD=23.99;ReadPosRankSum=2.415;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:2,209:213:99:5109,561,0 chrXV 347117 . T A 5258.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=220;Dels=0.00;FS=2.960;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.222;QD=23.90;ReadPosRankSum=2.293;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:2,218:220:99:5258,562,0 chrXV 347325 . A G 4011.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.8421;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.00;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4011,444,0 chrXV 347552 . C G 2982 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.61;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3015,327,0 chrXV 347788 . T C 2588 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=19.31;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2621,288,0 chrXV 347793 . A G 2495 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.90;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2528,279,0 chrXV 347863 . G T 2682 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=20.17;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2715,288,0 chrXV 347921 . A G 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=137;Dels=0.03;FS=2.913;HaplotypeScore=8.5436;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=0.712;QD=20.53;ReadPosRankSum=2.413;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2845,312,0 chrXV 347922 . C T 2945 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.02;FS=0.000;HaplotypeScore=9.4945;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=21.81;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2978,315,0 chrXV 348030 . A G 2031 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.02;FS=0.000;HaplotypeScore=26.3101;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.16;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2064,231,0 chrXV 348075 . G A 2382 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=23.58;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2415,261,0 chrXV 348098 . T C 2671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=119;Dels=0.00;FS=3.237;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.382;QD=22.45;ReadPosRankSum=1.703;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2704,300,0 chrXV 348149 . C T 2511 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=21.65;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2544,276,0 chrXV 348172 . C T 2185 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=20.42;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2218,234,0 chrXV 348182 . A G 1804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=99;Dels=0.00;FS=3.635;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=0.589;QD=18.22;ReadPosRankSum=1.696;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1837,201,0 chrXV 348210 . G A 1808 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=18.26;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1841,198,0 chrXV 348325 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=25.24;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3458,372,0 chrXV 348346 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=23.26;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3196,351,0 chrXV 348389 . A G 2360 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=22.26;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2393,270,0 chrXV 348459 . T C 2806 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.81;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2839,318,0 chrXV 348524 . T C 2932 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.05;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2965,327,0 chrXV 348559 . C T 2117 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.1527;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.42;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2150,234,0 chrXV 348597 . T A 1085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.050;DP=114;Dels=0.00;FS=2.341;HaplotypeScore=18.2704;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=1.743;QD=9.52;ReadPosRankSum=4.707;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:16,98:114:99:1118,129,0 chrXV 348744 . A G 4552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=200;Dels=0.00;FS=5.999;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.374;QD=22.76;ReadPosRankSum=1.715;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4552,516,0 chrXV 349311 . A T 4768.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.2088;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=22.60;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4768,508,0 chrXV 351721 . A G 4870.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=214;Dels=0.00;FS=9.729;HaplotypeScore=17.4017;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.588;QD=22.76;ReadPosRankSum=2.957;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:3,209:214:99:4870,540,0 chrXV 351780 . T C 4002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=188;Dels=0.00;FS=2.820;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.647;QD=21.29;ReadPosRankSum=2.410;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4002,441,0 chrXV 351787 . C T 4080.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=22.54;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4080,430,0 chrXV 351845 . A G 4465.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=11.3534;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.58;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,214:217:99:4465,483,0 chrXV 351979 . T C 4966.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=212;Dels=0.00;FS=9.667;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.510;QD=23.42;ReadPosRankSum=2.919;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:3,208:212:99:4966,552,0 chrXV 352012 . C T 4900.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=24.14;SB=-2.703e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4900,528,0 chrXV 352075 . T C 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=184;Dels=0.00;FS=3.967;HaplotypeScore=14.1451;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.571;QD=20.94;ReadPosRankSum=1.675;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:3853,435,0 chrXV 352138 . G A 3726.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.66;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3726,399,0 chrXV 352379 . C T 3129 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.58;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3162,336,0 chrXV 352660 . A G 3573.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=19.96;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3573,393,0 chrXV 352665 . A G 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-1.024;QD=19.91;ReadPosRankSum=1.639;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3723,408,0 chrXV 352775 . A G 4433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=205;Dels=0.00;FS=3.164;HaplotypeScore=11.8206;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.336;QD=21.62;ReadPosRankSum=1.680;SB=-2.495e+03 GT:AD:DP:GQ:PL 1/1:1,201:205:99:4433,492,0 chrXV 352864 . G A 5238.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.5536;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.25;SB=-2.918e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5238,556,0 chrXV 353226 . C G 5133.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.03;SB=-2.846e+03 GT:AD:DP:GQ:PL 1/1:0,229:233:99:5133,567,0 chrXV 353257 . C T 4628.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=16.8087;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.25;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4628,498,0 chrXV 353942 . T C 3129 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3162,357,0 chrXV 354233 . A G 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=15.4170;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.881;QD=21.56;ReadPosRankSum=2.358;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2944,324,0 chrXV 354577 . G A 3636.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.08;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3636,384,0 chrXV 354783 . C T 2311 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.07;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2344,249,0 chrXV 354906 . C T 999 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1032,108,0 chrXV 355770 . G A 3194 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.35;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3227,342,0 chrXV 356119 . T G 2319 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.3912;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2352,255,0 chrXV 356505 . C T 3443.01 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.90;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3443,360,0 chrXV 356783 . G A 4067.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.51;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4067,447,0 chrXV 357029 . C T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.9411;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.61;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3424,369,0 chrXV 357164 . A G 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.131;QD=22.41;ReadPosRankSum=1.703;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2745,297,0 chrXV 357276 . A G 2799 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.3395;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;QD=19.71;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2832,324,0 chrXV 357367 . C T 1843 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.02;FS=0.000;HaplotypeScore=24.0838;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=18.81;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1876,204,0 chrXV 357900 . G A 4392.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=15.2794;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.95;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4392,466,0 chrXV 358252 . T A 4550.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.4285;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.36;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4550,484,0 chrXV 358365 . C G 4156.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.0761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4156,471,0 chrXV 358900 . T C 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=150;Dels=0.00;FS=14.404;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-2.480;QD=22.23;ReadPosRankSum=2.953;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:3,146:150:99:3334,363,0 chrXV 359068 . G A 3092 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.90;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3125,330,0 chrXV 360406 . A C 3174 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3207,357,0 chrXV 360797 . C T 4214.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.8200;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.94;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4214,450,0 chrXV 360995 . T A 2879 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.85;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2912,309,0 chrXV 361461 . C G 3008 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3041,342,0 chrXV 363346 . T C 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.941;QD=22.05;ReadPosRankSum=1.711;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3572,402,0 chrXV 363397 . A G 3137 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.09;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3170,348,0 chrXV 363529 . T C 3172 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.03;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3205,360,0 chrXV 363553 . A G 3429.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=155;Dels=0.00;FS=2.950;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.072;QD=22.12;ReadPosRankSum=2.418;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3429,381,0 chrXV 363824 . G A 4094.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=24.08;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4094,438,0 chrXV 363851 . G A 3733.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.76;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3733,396,0 chrXV 363974 . C A 3482.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.76;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3482,372,0 chrXV 364095 . A G 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.7925;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.197;QD=24.89;ReadPosRankSum=1.669;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2771,306,0 chrXV 364251 . G T 2464 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.25;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2497,270,0 chrXV 364287 . C A 2795 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.50;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2828,297,0 chrXV 364302 . T A 2833 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.99;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2866,303,0 chrXV 365463 . G A 3809.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.26;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3809,402,0 chrXV 365792 . T C 5197.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=235;Dels=0.00;FS=2.619;HaplotypeScore=16.5688;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.133;QD=22.11;ReadPosRankSum=2.428;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:2,232:235:99:5197,570,0 chrXV 365841 . C G 5906.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=14.6457;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.12;SB=-3.380e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:5906,640,0 chrXV 366186 . A G 3840.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.27;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3840,432,0 chrXV 366618 . C T 5442.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.40;SB=-2.765e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5442,591,0 chrXV 366757 . G A 4297.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.62;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4297,459,0 chrXV 366780 . C T 4092.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.00;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4092,433,0 chrXV 367292 . T C 3194 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.31;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3227,360,0 chrXV 367576 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2472,267,0 chrXV 367673 . A G 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.324;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.276;QD=22.82;ReadPosRankSum=1.705;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2999,333,0 chrXV 367948 . G A 2801 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2834,303,0 chrXV 368025 . A G 2835 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=21.64;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2868,309,0 chrXV 368066 . C T 71.51 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=89.3466;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=0.69;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:12:104,12,0 chrXV 368094 . C G 1690 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=17.98;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1723,192,0 chrXV 368705 . A T 2724 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.1312;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.51;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2757,297,0 chrXV 369228 . T C 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.901;QD=23.62;ReadPosRankSum=1.704;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2986,330,0 chrXV 369905 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.0830;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.46;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3800,420,0 chrXV 370043 . T A 3791.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.1402;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3791,423,0 chrXV 370308 . G A 2570 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.35;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2603,282,0 chrXV 370719 . C T 3169 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.1303;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.32;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3202,339,0 chrXV 371126 . T C 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=3.073;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.025;QD=24.86;ReadPosRankSum=1.658;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3481,387,0 chrXV 371156 . C A 3390.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=10.1416;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=20.80;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3390,369,0 chrXV 371158 . A G 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=165;Dels=0.01;FS=3.260;HaplotypeScore=5.3570;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-0.850;QD=20.77;ReadPosRankSum=1.689;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:3427,378,0 chrXV 371317 . A G 2250 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.07;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2283,252,0 chrXV 371324 . T G 2351 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.76;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2384,264,0 chrXV 371400 . T A 3659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=3.651;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=0.328;QD=23.92;ReadPosRankSum=1.664;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3659,399,0 chrXV 371543 . G C 2732 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.03;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2765,309,0 chrXV 372007 . G T 2661 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=22.74;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2694,294,0 chrXV 372056 . C T 3435.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=24.19;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3435,360,0 chrXV 372211 . T C 2699 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=19.01;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2732,297,0 chrXV 372226 . G A 2844 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;QD=19.48;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2877,300,0 chrXV 372255 . T G 2241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=127;Dels=0.00;FS=7.475;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=41.51;MQ0=0;MQRankSum=-0.339;QD=17.65;ReadPosRankSum=2.372;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2274,249,0 chrXV 372259 . T C 1828 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.77;MQ0=0;QD=16.04;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1861,210,0 chrXV 372266 . C T 1803 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=17.85;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1836,195,0 chrXV 372279 . A G 1664 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;QD=18.49;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1697,183,0 chrXV 372353 . C T 1642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=1.347;QD=20.02;ReadPosRankSum=0.920;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1675,177,0 chrXV 372375 . G T 2459 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=20.49;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2492,261,0 chrXV 372460 . T C 1947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=88;Dels=0.00;FS=3.115;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=-1.443;QD=22.12;ReadPosRankSum=1.691;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:1,83:88:99:1980,219,0 chrXV 372609 . G T 3119 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=25.15;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3152,336,0 chrXV 372748 . C T 3765.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.98;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3765,405,0 chrXV 373454 . T C 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=176;Dels=0.00;FS=3.028;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.032;QD=21.72;ReadPosRankSum=2.407;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3823,423,0 chrXV 373468 . G T 4057.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.6039;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.17;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4057,433,0 chrXV 373970 . A C 2878 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2911,318,0 chrXV 374373 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.30;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2689,282,0 chrXV 374385 . A G 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=4.517;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=1.135;QD=20.82;ReadPosRankSum=1.702;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2448,276,0 chrXV 374613 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.83;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3561,378,0 chrXV 374669 . G A 3929.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.7076;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.98;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3929,417,0 chrXV 374709 . G T 3671.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.52;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3671,405,0 chrXV 374751 . G A 4061.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.21;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4061,432,0 chrXV 374763 . T C 4118.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.26;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4118,450,0 chrXV 374802 . G A 3805.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.25;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3805,405,0 chrXV 374879 . C T 3151 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.8366;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.35;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3184,339,0 chrXV 375648 . C T 6108.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=266;Dels=0.00;FS=3.763;HaplotypeScore=16.9148;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.289;QD=22.96;ReadPosRankSum=-0.328;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:1,263:266:99:6108,646,0 chrXV 375744 . G A 4558.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.37;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4558,501,0 chrXV 376710 . G A 4531.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.10;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4531,480,0 chrXV 376957 . G A 4577.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.00;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4577,490,0 chrXV 377656 . G A 6838.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.42;SB=-3.305e+03 GT:AD:DP:GQ:PL 1/1:0,280:280:99:6838,721,0 chrXV 377730 . C T 6421.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=12.7102;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.26;SB=-3.120e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:6421,699,0 chrXV 377802 . G A 6560.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.02;SB=-3.567e+03 GT:AD:DP:GQ:PL 1/1:0,284:285:99:6560,700,0 chrXV 378043 . T A 6058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=261;Dels=0.00;FS=4.705;HaplotypeScore=19.4110;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.279;QD=23.21;ReadPosRankSum=1.692;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:1,260:261:99:6058,643,0 chrXV 378653 . G T 4701.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=25.14;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4701,496,0 chrXV 378890 . A G 3790.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.69;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3790,417,0 chrXV 378911 . G C 3710.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.48;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3710,411,0 chrXV 380532 . C T 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.9864;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.392;QD=23.04;ReadPosRankSum=-1.506;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3641,390,0 chrXV 380935 . G C 3026 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3059,339,0 chrXV 382531 . A G 5100.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=20.3709;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.39;SB=-2.722e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5100,564,0 chrXV 383003 . C T 2327 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2360,252,0 chrXV 383458 . T C 2151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=5.306;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.586;QD=22.41;ReadPosRankSum=1.659;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2184,237,0 chrXV 383991 . A G 4519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=202;Dels=0.00;FS=5.676;HaplotypeScore=16.3779;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.085;QD=22.37;ReadPosRankSum=2.945;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:3,197:202:99:4519,495,0 chrXV 384077 . G C 3997.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:3997,447,0 chrXV 384240 . C T 3790.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.3281;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.03;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3790,405,0 chrXV 384665 . A G 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=161;Dels=0.00;FS=4.510;HaplotypeScore=10.8770;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.409;QD=23.75;ReadPosRankSum=1.711;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3823,426,0 chrXV 384747 . A G 2971 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.0746;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=22.17;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3004,330,0 chrXV 384880 . G A 2743 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.0793;MLEAC=2;MLEAF=1.00;MQ=60.44;MQ0=0;QD=18.53;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2776,303,0 chrXV 385047 . T C 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6445;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;MQRankSum=-0.451;QD=23.57;ReadPosRankSum=1.645;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2861,309,0 chrXV 385189 . C T 2286 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=36.35;MQ0=0;QD=17.32;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2319,258,0 chrXV 385213 . G A 1583.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.573;DP=257;Dels=0.00;FS=45.146;HaplotypeScore=9.8930;MLEAC=1;MLEAF=0.500;MQ=32.95;MQ0=1;MQRankSum=-1.344;QD=6.16;ReadPosRankSum=10.133;SB=-7.450e+02 GT:AD:DP:GQ:PL 0/1:137,120:257:99:1613,0,119 chrXV 385979 . T G 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=113;Dels=0.00;FS=3.541;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.180;QD=24.62;ReadPosRankSum=1.701;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2815,309,0 chrXV 386205 . T C 3292.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.24;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3292,363,0 chrXV 387059 . C A 4549.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.46;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4549,486,0 chrXV 388772 . A T 4334.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.1330;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4334,468,0 chrXV 388921 . C T 3207 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3240,339,0 chrXV 389237 . T G 5154.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=213;Dels=0.00;FS=2.564;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.259;QD=24.20;ReadPosRankSum=2.948;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:3,210:213:99:5154,570,0 chrXV 390692 . A G 5263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=222;Dels=0.00;FS=10.536;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.295;QD=23.71;ReadPosRankSum=2.914;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:3,218:222:99:5263,582,0 chrXV 391279 . A G 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.505;QD=23.13;ReadPosRankSum=1.568;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2971,333,0 chrXV 391475 . A G 3929.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.40;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,156:161:99:3929,435,0 chrXV 391647 . C G 4540.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.6718;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.36;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4540,498,0 chrXV 392258 . G A 2881 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.87;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2914,312,0 chrXV 392304 . A G 3478.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.32;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3478,384,0 chrXV 392644 . T C 4211.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=188;Dels=0.00;FS=12.548;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.005;QD=22.40;ReadPosRankSum=2.963;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:3,184:188:99:4211,459,0 chrXV 392800 . G A 3800.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.5470;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.17;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3800,417,0 chrXV 392896 . A G 3110 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3143,351,0 chrXV 393061 . A G 3489.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3489,387,0 chrXV 393187 . T C 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.1748;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.388;QD=21.92;ReadPosRankSum=1.702;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2620,291,0 chrXV 393319 . A T 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=162;Dels=0.00;FS=3.495;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.087;QD=24.31;ReadPosRankSum=1.711;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3939,420,0 chrXV 393430 . T C 3514.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.40;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3514,384,0 chrXV 393724 . G A 3045 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.07;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3078,342,0 chrXV 393958 . A G 3784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=162;Dels=0.00;FS=3.808;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.721;QD=23.36;ReadPosRankSum=1.711;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3784,423,0 chrXV 394567 . A G 3016 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.68;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3049,333,0 chrXV 395268 . C T 3431.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.34;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3431,375,0 chrXV 395321 . T C 3413.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3413,381,0 chrXV 396447 . A C 4265.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.10;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4265,474,0 chrXV 396750 . C T 2713 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=18.84;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2746,291,0 chrXV 396774 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=19.22;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2974,315,0 chrXV 396793 . A G 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=149;Dels=0.00;FS=5.772;HaplotypeScore=2.7134;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;MQRankSum=-0.177;QD=15.63;ReadPosRankSum=2.558;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:3,145:149:99:2362,264,0 chrXV 396805 . G A 2769 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.2802;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=16.88;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2802,303,0 chrXV 396909 . C T 3108 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.9176;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.14;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3141,330,0 chrXV 397231 . A T 3713.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.2159;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=24.27;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3713,402,0 chrXV 397493 . G A 329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.946;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=16.7794;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.030;QD=2.61;ReadPosRankSum=2.409;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:39:362,39,0 chrXV 397607 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.9092;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.82;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2540,270,0 chrXV 398023 . G A 3777.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=22.35;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3777,408,0 chrXV 398242 . C T 4341.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.09;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4341,463,0 chrXV 398404 . C T 4723.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.97;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:4723,496,0 chrXV 398467 . A G 3738.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=169;Dels=0.00;FS=6.042;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.681;QD=22.12;ReadPosRankSum=2.934;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:3,164:169:99:3738,411,0 chrXV 398939 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2969,318,0 chrXV 399358 . T A 2939 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6985;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.10;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2972,321,0 chrXV 399526 . T C 4094.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.2301;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.53;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4094,450,0 chrXV 399654 . T C 4341.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=8.2637;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.72;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4341,480,0 chrXV 399994 . A C 3054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=142;Dels=0.00;FS=3.262;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.610;QD=21.51;ReadPosRankSum=1.708;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3087,336,0 chrXV 400021 . T A 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.103;QD=19.10;ReadPosRankSum=1.706;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2592,273,0 chrXV 400022 . T G 2477 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.49;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2510,273,0 chrXV 400039 . T C 2497 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=17.58;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2530,285,0 chrXV 400072 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=17.66;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2770,297,0 chrXV 400099 . T C 2657 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=18.84;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2690,306,0 chrXV 400107 . T C 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=145;Dels=0.00;FS=6.873;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=0.246;QD=20.08;ReadPosRankSum=2.382;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2945,324,0 chrXV 400253 . G A 3515.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5386;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=23.75;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3515,372,0 chrXV 400317 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=156;Dels=0.00;FS=2.998;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.468;QD=22.15;ReadPosRankSum=2.418;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3456,384,0 chrXV 401076 . G C 4529.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.9967;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.09;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4529,498,0 chrXV 402136 . C T 2978 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.02;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3011,324,0 chrXV 402170 . G A 2753 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.02;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2786,297,0 chrXV 402179 . G A 2693 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=22.07;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2726,288,0 chrXV 402256 . G A 3175 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.45;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3208,348,0 chrXV 402863 . A G 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=134;Dels=0.00;FS=4.195;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.207;QD=25.21;ReadPosRankSum=1.655;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3378,375,0 chrXV 402926 . A G 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=121;Dels=0.01;FS=10.539;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.689;QD=22.69;ReadPosRankSum=2.942;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2779,297,0 chrXV 403168 . A G 4260.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.90;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4260,486,0 chrXV 403351 . T C 4871.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=213;Dels=0.00;FS=6.248;HaplotypeScore=9.8560;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.029;QD=22.87;ReadPosRankSum=2.380;SB=-2.661e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:4871,531,0 chrXV 404137 . G T 2180 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.15;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2213,240,0 chrXV 404477 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.37;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3668,402,0 chrXV 404516 . A G 3847.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.63;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3847,423,0 chrXV 404582 . A G 3324.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=145;Dels=0.00;FS=7.420;HaplotypeScore=10.2498;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.043;QD=22.92;ReadPosRankSum=2.382;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3324,363,0 chrXV 405484 . A G 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=-0.757;QD=18.99;ReadPosRankSum=2.396;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2673,294,0 chrXV 405487 . T G 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=136;Dels=0.00;FS=4.904;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=0.612;QD=19.60;ReadPosRankSum=1.680;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,132:136:99:2698,297,0 chrXV 405535 . T C 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=4.122;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-1.704;QD=21.38;ReadPosRankSum=1.704;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2684,297,0 chrXV 405782 . G A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.86;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3853,417,0 chrXV 405935 . T C 4014.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4014,450,0 chrXV 406046 . T C 4500.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.46;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4500,498,0 chrXV 406547 . A G 2492 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.92;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2525,279,0 chrXV 406655 . T C 2764 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=23.23;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2797,312,0 chrXV 406687 . A G 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-0.146;QD=23.67;ReadPosRankSum=1.700;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2589,288,0 chrXV 406857 . T C 2062 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=104;Dels=0.00;FS=2.815;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;MQRankSum=0.036;QD=19.83;ReadPosRankSum=2.353;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:2,100:104:99:2095,231,0 chrXV 406862 . T C 1993 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;QD=19.73;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2026,225,0 chrXV 406864 . G C 2083 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;QD=20.62;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2116,231,0 chrXV 406895 . G A 1656 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=17.25;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1689,183,0 chrXV 406909 . C A 1822 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=17.69;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1855,201,0 chrXV 407036 . T C 3404.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=23.48;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3404,378,0 chrXV 407061 . G A 3220.05 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=23.17;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3253,354,0 chrXV 407249 . T C 3142 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=15.8896;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.28;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3175,360,0 chrXV 407671 . G A 5869.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=18.9219;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.97;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5869,616,0 chrXV 408140 . T C 3158 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3191,357,0 chrXV 408312 . G A 2775 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2808,297,0 chrXV 408953 . C A 7128.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=12.6472;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.37;SB=-2.717e+03 GT:AD:DP:GQ:PL 1/1:0,279:281:99:7128,760,0 chrXV 409147 . C T 6555.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=21.4670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-3.050e+03 GT:AD:DP:GQ:PL 1/1:0,290:291:99:6555,709,0 chrXV 409592 . G T 4107.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.08;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4107,435,0 chrXV 410103 . C T 3189 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=23.62;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3222,336,0 chrXV 410118 . A T 2803 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.88;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2836,303,0 chrXV 410132 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.08;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2666,291,0 chrXV 410754 . G C 2699 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=19.99;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2732,312,0 chrXV 411250 . A G 2895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.903;QD=24.53;ReadPosRankSum=1.703;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2928,318,0 chrXV 411283 . A G 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=122;Dels=0.00;FS=5.782;HaplotypeScore=10.6767;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.827;QD=23.14;ReadPosRankSum=2.943;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2856,312,0 chrXV 411868 . T C 4214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=17.9920;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.964;QD=21.61;ReadPosRankSum=2.839;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:3,190:195:99:4214,468,0 chrXV 412174 . C T 3685.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.8532;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.89;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3685,393,0 chrXV 412579 . C T 2059 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2092,216,0 chrXV 413171 . T C 3653.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.048;QD=23.12;ReadPosRankSum=1.710;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3653,402,0 chrXV 413641 . T G 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=128;Dels=0.00;FS=7.475;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.339;QD=22.73;ReadPosRankSum=2.392;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2942,324,0 chrXV 414123 . G A 2453 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.03;FS=0.000;HaplotypeScore=16.9312;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;QD=22.93;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2486,270,0 chrXV 414403 . G C 3525.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.04;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3525,399,0 chrXV 415806 . C T 2654 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2687,288,0 chrXV 416506 . A G 2848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=125;Dels=0.00;FS=5.763;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.460;QD=22.78;ReadPosRankSum=2.912;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2881,318,0 chrXV 417236 . G A 3634.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.41;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3634,384,0 chrXV 417371 . G C 4323.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=15.5081;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.63;SB=-2.479e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4323,474,0 chrXV 418252 . C A 2859 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=106.8325;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.16;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2892,306,0 chrXV 418324 . A G 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=129;Dels=0.02;FS=0.000;HaplotypeScore=32.4248;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.220;QD=20.57;ReadPosRankSum=1.650;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2686,303,0 chrXV 419902 . G A 3539.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.24;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3539,381,0 chrXV 419928 . G A 3710.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.90;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3710,390,0 chrXV 420114 . T G 5122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=217;Dels=0.00;FS=5.864;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.177;QD=23.60;ReadPosRankSum=2.940;SB=-2.481e+03 GT:AD:DP:GQ:PL 1/1:3,213:217:99:5122,558,0 chrXV 421530 . A G 4361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=194;Dels=0.00;FS=2.995;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.082;QD=22.48;ReadPosRankSum=2.399;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4361,477,0 chrXV 423361 . G A 3959.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.1193;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=17.83;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:3959,426,0 chrXV 423370 . T C 3919.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=223;Dels=0.00;FS=4.871;HaplotypeScore=8.9417;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.980;QD=17.57;ReadPosRankSum=1.685;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:1,220:223:99:3919,426,0 chrXV 423406 . A G 3955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=10.5484;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=1.753;QD=17.82;ReadPosRankSum=2.361;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:3955,435,0 chrXV 423598 . A C 4293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=3.910;HaplotypeScore=13.3054;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=1.010;QD=22.71;ReadPosRankSum=1.714;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4293,474,0 chrXV 423658 . C T 4152.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.2349;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.00;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4152,441,0 chrXV 423752 . C T 4363.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.60;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4363,460,0 chrXV 424102 . A G 2643 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.60;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2676,297,0 chrXV 424341 . T C 3149 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.3196;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3182,363,0 chrXV 424779 . G C 3108 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=13.8765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3141,345,0 chrXV 425266 . G A 3499.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.48;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3499,366,0 chrXV 425287 . C G 3723.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.29;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3723,411,0 chrXV 425468 . G A 3714.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.4508;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.21;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3714,396,0 chrXV 426193 . T C 2287 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2320,252,0 chrXV 426621 . G C 1253 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=26.5736;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=9.42;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,122:131:99:1286,150,0 chrXV 426698 . A G 4122.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.55;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4122,465,0 chrXV 426767 . G C 3789.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=15.8404;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.25;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3789,423,0 chrXV 426891 . G A 4387.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.97;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4387,480,0 chrXV 427304 . A T 4989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=207;Dels=0.00;FS=3.053;HaplotypeScore=22.8942;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.832;QD=24.10;ReadPosRankSum=1.664;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4989,537,0 chrXV 427406 . T C 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=158;Dels=0.00;FS=3.419;HaplotypeScore=14.2630;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.643;QD=22.26;ReadPosRankSum=1.665;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3517,387,0 chrXV 427853 . C A 6731.01 filter AC=2;AF=1.00;AN=2;DP=369;Dels=0.00;FS=0.000;HaplotypeScore=6.6401;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=18.24;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,364:369:99:6731,735,0 chrXV 427857 . A G 6526.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;DP=376;Dels=0.00;FS=13.342;HaplotypeScore=9.9345;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=-0.579;QD=17.36;ReadPosRankSum=2.949;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:3,371:376:99:6526,723,0 chrXV 428615 . C T 5020.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=7.3746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5020,564,0 chrXV 429219 . G A 3851.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.5037;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3851,432,0 chrXV 429969 . A G 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.452;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-1.173;QD=23.86;ReadPosRankSum=1.704;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:3015,330,0 chrXV 430188 . G A 148.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;DP=143;Dels=0.02;FS=108.064;HaplotypeScore=49.1870;MLEAC=1;MLEAF=0.500;MQ=53.02;MQ0=0;MQRankSum=-0.095;QD=1.04;ReadPosRankSum=-4.224;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,39:140:99:178,0,645 chrXV 430298 . G A 3829.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.2150;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.08;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3829,405,0 chrXV 431558 . G T 3318.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=24.76;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3318,357,0 chrXV 431730 . G T 2572 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=20.91;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2605,285,0 chrXV 431735 . T C 2485 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=21.42;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2518,282,0 chrXV 431766 . A G 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=120;Dels=0.00;FS=6.981;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=0.646;QD=19.42;ReadPosRankSum=2.368;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2363,264,0 chrXV 431789 . A C 2040 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=17.74;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2073,231,0 chrXV 431849 . G C 3876.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.3922;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.21;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3876,426,0 chrXV 433066 . C T 2336 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2770;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.13;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2369,249,0 chrXV 434340 . G A 4101.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.71;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4101,433,0 chrXV 434364 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.05;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4034,435,0 chrXV 436490 . C G 2767 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2800,312,0 chrXV 436610 . G C 1861 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.42;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1894,207,0 chrXV 436723 . A G 1952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.223;QD=23.52;ReadPosRankSum=2.331;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1985,219,0 chrXV 436826 . T C 2023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=95;Dels=0.01;FS=5.587;HaplotypeScore=11.2651;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.602;QD=21.29;ReadPosRankSum=2.882;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:3,91:94:99:2056,228,0 chrXV 436950 . A G 2654 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.77;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2687,297,0 chrXV 437266 . A T 2879 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.98;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2912,309,0 chrXV 437324 . A G 2877 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.65;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2910,321,0 chrXV 437342 . A G 2537 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.65;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2570,285,0 chrXV 437430 . C G 3375.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.94;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3375,369,0 chrXV 437948 . T G 4148.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=185;Dels=0.00;FS=2.811;HaplotypeScore=10.3226;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.434;QD=22.42;ReadPosRankSum=2.423;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4148,465,0 chrXV 438160 . C T 4041.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.64;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:4041,424,0 chrXV 438605 . C T 2503 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.30;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2536,270,0 chrXV 438975 . A T 3851.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3851,408,0 chrXV 440058 . A G 3743.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.45;SB=-1.981e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3743,420,0 chrXV 440656 . C T 4430.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=10.9828;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.37;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4430,466,0 chrXV 441140 . T C 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.101;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.490;QD=23.51;ReadPosRankSum=1.708;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3409,375,0 chrXV 441487 . C T 3517.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.60;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3517,384,0 chrXV 441632 . C T 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.197;QD=23.07;ReadPosRankSum=-1.134;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2571,257,0 chrXV 442148 . G C 4976.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=213;Dels=0.00;FS=3.113;HaplotypeScore=12.7230;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.716;QD=23.36;ReadPosRankSum=-1.374;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4976,540,0 chrXV 442740 . A T 3847.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.8707;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.46;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3847,414,0 chrXV 442786 . T C 5581.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=15.3157;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.428;QD=24.59;ReadPosRankSum=2.384;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:2,224:227:99:5581,621,0 chrXV 442914 . G A 3750.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=23.15;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3750,394,0 chrXV 442941 . A G 3994.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=209;Dels=0.00;FS=3.031;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-0.314;QD=19.11;ReadPosRankSum=2.426;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:2,205:209:99:3994,444,0 chrXV 442944 . T C 4123.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=227;Dels=0.00;FS=3.107;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.053;QD=18.16;ReadPosRankSum=1.702;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:1,226:227:99:4123,462,0 chrXV 443051 . C T 3501.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=16.6888;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.59;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3501,372,0 chrXV 443071 . G C 3130 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.20;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3163,351,0 chrXV 443252 . C T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.49;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3289,351,0 chrXV 443357 . T G 2304 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=18.43;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2337,258,0 chrXV 443358 . T C 2285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.417;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.324;QD=18.43;ReadPosRankSum=1.704;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2318,255,0 chrXV 443438 . G T 2297 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.07;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2330,255,0 chrXV 443464 . T A 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=116;Dels=0.00;FS=7.718;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-0.498;QD=21.22;ReadPosRankSum=2.365;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2495,270,0 chrXV 443686 . C G 2936 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.02;FS=0.000;HaplotypeScore=14.5863;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.76;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2969,324,0 chrXV 443793 . C A 2112 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=10.6175;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.00;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2145,237,0 chrXV 443794 . T C 2057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=11.4062;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-1.437;QD=21.65;ReadPosRankSum=1.695;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2090,237,0 chrXV 444865 . G A 5372.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.67;SB=-3.025e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5372,585,0 chrXV 446582 . C T 4112.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.36;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4112,433,0 chrXV 447546 . C A 4383.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4383,489,0 chrXV 447606 . C A 3860.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3860,411,0 chrXV 447942 . C T 6682.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=17.2866;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.95;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:0,279:279:99:6682,726,0 chrXV 449459 . A C 2030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=94;Dels=0.00;FS=13.476;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.589;QD=21.60;ReadPosRankSum=2.923;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:3,88:94:99:2063,228,0 chrXV 450301 . T C 3922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=200;Dels=0.00;FS=3.011;HaplotypeScore=15.1170;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.329;QD=19.61;ReadPosRankSum=2.363;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:2,197:200:99:3922,435,0 chrXV 450461 . G A 3834.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=10.5435;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.66;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3834,411,0 chrXV 451185 . G A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3321,369,0 chrXV 451367 . C A 4099.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.40;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:4099,435,0 chrXV 451912 . A C 2665 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.4585;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2698,297,0 chrXV 451996 . G A 4387.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=26.11;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4387,471,0 chrXV 452290 . G A 5046.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.33;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5046,535,0 chrXV 452446 . T C 3655.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.121;DP=157;Dels=0.00;FS=6.217;HaplotypeScore=11.3592;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.243;QD=23.28;ReadPosRankSum=2.387;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:2,155:157:99:3655,382,0 chrXV 453067 . C T 3596.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=22.62;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3596,387,0 chrXV 453073 . G A 3490.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.54;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3490,372,0 chrXV 453123 . T C 3203 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.21;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3236,354,0 chrXV 453707 . T C 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=3.083;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.144;QD=23.11;ReadPosRankSum=1.617;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2829,309,0 chrXV 453762 . C T 2811 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.42;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2844,312,0 chrXV 453881 . A G 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=137;Dels=0.00;FS=6.319;HaplotypeScore=8.4371;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.523;QD=22.39;ReadPosRankSum=2.413;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:2,132:137:99:3100,348,0 chrXV 454031 . C T 2923 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.0092;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2956,315,0 chrXV 456378 . G A 4195.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.44;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4195,456,0 chrXV 457531 . T C 4936.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=228;Dels=0.00;FS=4.657;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.501;QD=21.65;ReadPosRankSum=1.717;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,224:228:99:4936,540,0 chrXV 458320 . C T 3567.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.47;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3567,390,0 chrXV 460037 . T C 6821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=281;Dels=0.00;FS=2.915;HaplotypeScore=13.0900;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.205;QD=24.27;ReadPosRankSum=2.415;SB=-3.169e+03 GT:AD:DP:GQ:PL 1/1:2,279:281:99:6821,756,0 chrXV 460421 . G T 3408.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;QD=18.62;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3408,366,0 chrXV 460439 . C T 2517 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.76;MQ0=0;QD=16.34;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2550,276,0 chrXV 460441 . C G 2370 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.31;MQ0=0;QD=15.59;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2403,267,0 chrXV 460448 . T C 2087 SnpCluster AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;QD=14.70;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2120,231,0 chrXV 460459 . A C 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;MQRankSum=-1.135;QD=12.87;ReadPosRankSum=1.702;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1526,171,0 chrXV 460473 . G A 986 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=0;QD=11.08;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1019,111,0 chrXV 460479 . T C 765 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;QD=9.68;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:93:798,93,0 chrXV 460482 . A G 796 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=0;QD=10.61;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:93:829,93,0 chrXV 460485 . G A 816 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.99;MQ0=0;QD=10.20;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:93:849,93,0 chrXV 460514 . T C 922 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.65;MQ0=0;QD=11.82;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:955,108,0 chrXV 460530 . T C 1253 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.210;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=0;MQRankSum=-0.484;QD=11.29;ReadPosRankSum=1.701;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1286,144,0 chrXV 460533 . A G 1334 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.89;MQ0=0;QD=11.81;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1367,150,0 chrXV 460539 . G A 1498 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.27;MQ0=0;QD=11.61;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1531,165,0 chrXV 460554 . T A 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=14.0067;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;MQRankSum=-0.822;QD=14.99;ReadPosRankSum=1.712;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:2687,288,0 chrXV 461014 . G A 4074.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.82;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4074,432,0 chrXV 461253 . A T 2744 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.87;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2777,297,0 chrXV 461290 . C T 2665 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.78;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2698,279,0 chrXV 461423 . G A 1751 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.45;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1784,195,0 chrXV 461625 . T C 1498 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=19.45;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1531,171,0 chrXV 461643 . G T 1467 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=18.57;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1500,159,0 chrXV 461644 . T C 1413 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.661;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-0.680;QD=17.89;ReadPosRankSum=1.688;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1446,159,0 chrXV 461648 . C T 1512 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=18.44;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1545,165,0 chrXV 462858 . C A 47.97 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.70;MQ0=0;QD=1.17;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:9:80,9,0 chrXV 462861 . G A 148.06 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=0;QD=3.22;SB=-2.511e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:21:181,21,0 chrXV 463112 . A C 1958 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=19.01;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1991,219,0 chrXV 463115 . C T 2105 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=20.24;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2138,225,0 chrXV 463185 . G A 2910 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.24;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2943,312,0 chrXV 463240 . T C 2613 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.53;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2646,291,0 chrXV 463343 . T A 2889 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=5.8499;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=25.12;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2922,309,0 chrXV 463392 . A T 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=111;Dels=0.00;FS=3.014;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=0.168;QD=21.12;ReadPosRankSum=2.293;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2377,252,0 chrXV 463444 . C A 2209 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.01;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2242,240,0 chrXV 463462 . G A 2150 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.48;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2183,240,0 chrXV 463642 . G C 3404.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.0773;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=23.48;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3404,375,0 chrXV 463766 . G T 2866 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=21.88;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2899,309,0 chrXV 463787 . A C 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=128;Dels=0.00;FS=2.866;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=-0.586;QD=20.21;ReadPosRankSum=2.373;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2620,288,0 chrXV 463823 . C G 2786 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=19.35;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2819,312,0 chrXV 463828 . A G 2656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=-0.479;QD=18.84;ReadPosRankSum=2.415;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2689,297,0 chrXV 463865 . G A 2725 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.96;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2758,294,0 chrXV 463933 . G T 2311 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.60;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2344,255,0 chrXV 464006 . C T 2092 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=23.51;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2125,225,0 chrXV 464022 . T G 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;MQRankSum=0.022;QD=23.32;ReadPosRankSum=1.688;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1875,207,0 chrXV 464060 . A G 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=87;Dels=0.00;FS=3.496;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;MQRankSum=-1.202;QD=23.32;ReadPosRankSum=1.651;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,84:87:99:2062,225,0 chrXV 464146 . C A 1786 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=22.90;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1819,198,0 chrXV 464158 . C T 1459 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;QD=23.16;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1492,165,0 chrXV 464215 . A C 935 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=34.7943;MLEAC=2;MLEAF=1.00;MQ=32.55;MQ0=0;QD=19.48;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:968,108,0 chrXV 464238 . A G 1072 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;QD=16.49;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1105,120,0 chrXV 464244 . G T 1056 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;QD=16.00;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1089,117,0 chrXV 464274 . G A 1361 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=10.0434;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=16.20;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1394,153,0 chrXV 464339 . A T 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=5.260;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=0.332;QD=22.01;ReadPosRankSum=1.695;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2124,228,0 chrXV 464414 . A G 277 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.07;MQ0=0;QD=4.69;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:36:310,36,0 chrXV 464415 . C G 288 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.07;MQ0=0;QD=4.88;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:36:321,36,0 chrXV 464863 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.03;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2700,285,0 chrXV 465313 . T C 4449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=201;Dels=0.00;FS=2.870;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=1.277;QD=22.13;ReadPosRankSum=2.388;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4449,483,0 chrXV 465319 . G A 4440.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.13;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4440,472,0 chrXV 465410 . C G 3644.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.06;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3644,399,0 chrXV 465458 . T A 4292.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.45;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4292,448,0 chrXV 465622 . A G 4412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=198;Dels=0.00;FS=4.365;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.214;QD=22.28;ReadPosRankSum=1.714;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,193:198:99:4412,501,0 chrXV 465655 . G A 4211.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=20.95;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4211,462,0 chrXV 465661 . G A 4085.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.1703;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.12;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4085,462,0 chrXV 465693 . C G 3421.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=18.29;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3421,378,0 chrXV 465910 . G A 3637.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.1233;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.31;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3637,399,0 chrXV 465934 . G A 3658.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.30;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3658,385,0 chrXV 466090 . G A 3166 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.80;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3199,339,0 chrXV 466148 . C T 2993 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.50;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3026,330,0 chrXV 466231 . G A 2964 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.64;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2997,327,0 chrXV 466267 . G A 2851 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2884,303,0 chrXV 467140 . T A 3079 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.7221;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.95;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3112,339,0 chrXV 467149 . T A 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=150;Dels=0.00;FS=3.285;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.695;QD=21.89;ReadPosRankSum=1.638;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3284,345,0 chrXV 467239 . G A 3716.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.61;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3716,396,0 chrXV 467407 . A G 4753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=202;Dels=0.00;FS=3.424;HaplotypeScore=17.2781;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.277;QD=23.53;ReadPosRankSum=1.697;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:1,197:202:99:4753,531,0 chrXV 468169 . G A 4963.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.59;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:4963,546,0 chrXV 468172 . G C 4904.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=19.77;SB=-3.081e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:4904,552,0 chrXV 468284 . G A 4666.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=15.0564;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.11;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4666,516,0 chrXV 468336 . A G 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-0.598;QD=21.80;ReadPosRankSum=1.711;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3685,405,0 chrXV 468364 . T C 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=168;Dels=0.00;FS=11.607;HaplotypeScore=5.4883;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=0.259;QD=21.09;ReadPosRankSum=2.390;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:3,164:168:99:3543,390,0 chrXV 468561 . A G 2552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=117;Dels=0.00;FS=7.537;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.520;QD=21.81;ReadPosRankSum=2.386;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2585,285,0 chrXV 468674 . T C 3908.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=169;Dels=0.00;FS=7.767;HaplotypeScore=9.3424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.475;QD=23.12;ReadPosRankSum=2.420;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:2,166:169:99:3908,432,0 chrXV 471040 . T C 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=3.495;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.324;QD=22.55;ReadPosRankSum=1.704;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2807,306,0 chrXV 471091 . A G 2932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-0.754;QD=22.05;ReadPosRankSum=1.706;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2965,339,0 chrXV 471285 . C T 3473.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.31;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3473,366,0 chrXV 471315 . G T 3210.99 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.12;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3244,348,0 chrXV 471329 . A G 3275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=156;Dels=0.00;FS=7.510;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-0.244;QD=20.99;ReadPosRankSum=2.402;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3275,357,0 chrXV 471799 . A G 3720.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.884;QD=25.14;ReadPosRankSum=1.709;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3720,408,0 chrXV 471859 . G A 5013.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=16.7122;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.69;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,198:203:99:5013,529,0 chrXV 472668 . C T 6654.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=15.0188;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.64;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:6654,727,0 chrXV 472765 . A C 7456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=306;Dels=0.00;FS=4.147;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.185;QD=24.37;ReadPosRankSum=1.721;SB=-3.075e+03 GT:AD:DP:GQ:PL 1/1:1,303:306:99:7456,825,0 chrXV 473069 . A G 4407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.139;DP=190;Dels=0.00;FS=2.994;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.394;QD=23.19;ReadPosRankSum=2.398;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4407,486,0 chrXV 473222 . A G 3194 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.2567;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3227,354,0 chrXV 474069 . A G 4891.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=206;Dels=0.00;FS=7.575;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.186;QD=23.74;ReadPosRankSum=2.378;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4891,543,0 chrXV 474686 . T C 2139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.992;DP=122;Dels=0.00;FS=7.570;HaplotypeScore=4.1978;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=0.138;QD=17.53;ReadPosRankSum=3.931;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:6,114:122:99:2172,240,0 chrXV 474687 . T C 2085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.509;DP=122;Dels=0.00;FS=2.597;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.275;QD=17.09;ReadPosRankSum=2.859;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:3,118:122:99:2118,234,0 chrXV 475809 . T C 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=3.475;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.628;QD=22.47;ReadPosRankSum=1.707;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3156,339,0 chrXV 476018 . A G 2418 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2451,270,0 chrXV 476972 . A G 2280 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.27;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2313,252,0 chrXV 477077 . T C 2091 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.3442;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2124,240,0 chrXV 477610 . A G 2831 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=21.61;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2864,318,0 chrXV 477611 . G A 2906 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.02;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2939,318,0 chrXV 477629 . G A 3309.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=22.66;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3309,354,0 chrXV 477659 . A G 2481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=0.463;QD=18.80;ReadPosRankSum=1.679;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2514,276,0 chrXV 477680 . A G 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=0.609;QD=18.53;ReadPosRankSum=1.700;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2034,225,0 chrXV 477707 . T C 2254 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.26;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2287,258,0 chrXV 477773 . A G 2998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7289;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.715;QD=23.79;ReadPosRankSum=1.650;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3031,345,0 chrXV 478097 . T C 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.1827;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.467;QD=23.13;ReadPosRankSum=1.702;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,114:118:99:2762,303,0 chrXV 478184 . T A 4072.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.0934;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4072,432,0 chrXV 478274 . G A 3205.99 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5029;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.09;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3239,357,0 chrXV 478679 . A G 7480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=342;Dels=0.00;FS=3.259;HaplotypeScore=16.6971;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.330;QD=21.87;ReadPosRankSum=1.722;SB=-4.138e+03 GT:AD:DP:GQ:PL 1/1:1,340:342:99:7480,822,0 chrXV 478865 . G A 7324.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=22.0831;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-3.509e+03 GT:AD:DP:GQ:PL 1/1:0,309:311:99:7324,775,0 chrXV 479299 . T C 1380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.994;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.095;QD=20.91;ReadPosRankSum=2.374;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1413,159,0 chrXV 479565 . T C 7143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.249;DP=305;Dels=0.00;FS=5.206;HaplotypeScore=23.8866;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.991;QD=23.42;ReadPosRankSum=3.421;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:4,299:305:99:7143,795,0 chrXV 480144 . G A 7615.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=380;Dels=0.00;FS=0.000;HaplotypeScore=26.8615;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.430;QD=20.04;ReadPosRankSum=1.372;SB=-3.933e+03 GT:AD:DP:GQ:PL 1/1:1,375:379:99:7615,826,0 chrXV 480460 . G A 5001.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=14.2560;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.33;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5001,532,0 chrXV 481156 . G C 2680 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=17.52;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2713,294,0 chrXV 481843 . T C 5005.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.077;QD=24.41;ReadPosRankSum=1.715;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:5005,549,0 chrXV 482179 . C T 3153 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.85;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3186,348,0 chrXV 482608 . G A 4704.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.78;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4704,504,0 chrXV 482929 . T C 3951.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3951,432,0 chrXV 483042 . C T 2818 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.8899;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=21.19;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2851,306,0 chrXV 483363 . A G 5225.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=208;Dels=0.00;FS=6.258;HaplotypeScore=10.5117;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.042;QD=25.12;ReadPosRankSum=1.682;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,206:208:99:5225,579,0 chrXV 483466 . T C 6321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=19.0891;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.462;QD=23.32;ReadPosRankSum=1.719;SB=-3.369e+03 GT:AD:DP:GQ:PL 1/1:1,269:271:99:6321,682,0 chrXV 483624 . G A 5438.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=12.1646;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.11;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5438,574,0 chrXV 483971 . C T 4529.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=16.9537;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.99;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4529,489,0 chrXV 484266 . G A 3469.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3469,384,0 chrXV 484571 . G C 5103.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5103,561,0 chrXV 485031 . A G 4245.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4245,477,0 chrXV 485252 . A G 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.620;QD=22.75;ReadPosRankSum=1.643;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3527,387,0 chrXV 485322 . C T 3349.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3349,363,0 chrXV 485571 . C T 4022.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.0791;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4022,432,0 chrXV 485749 . G T 3454.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3454,363,0 chrXV 485898 . A G 3727.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=24.05;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3727,417,0 chrXV 485952 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=16.5112;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.41;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3742,405,0 chrXV 486108 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.78;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3668,402,0 chrXV 486135 . A G 2902 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=18.84;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2935,321,0 chrXV 486141 . G A 2863 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=19.34;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2896,315,0 chrXV 486192 . T C 3118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=160;Dels=0.00;FS=3.590;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=0.325;QD=19.49;ReadPosRankSum=1.710;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3151,351,0 chrXV 486808 . C T 3178 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.01;FS=0.000;HaplotypeScore=12.0659;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.38;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3211,348,0 chrXV 487374 . C T 2287 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=27.23;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2320,243,0 chrXV 487809 . A G 3647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.048;QD=23.08;ReadPosRankSum=1.710;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3647,396,0 chrXV 489971 . T C 916 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:949,102,0 chrXV 491190 . A G 3462.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=24.73;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3462,375,0 chrXV 491411 . C T 3447.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.1899;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.28;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3447,366,0 chrXV 491483 . C T 3162 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.8860;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.01;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3195,342,0 chrXV 491493 . G A 2986 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=19.77;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3019,333,0 chrXV 491810 . T C 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=164;Dels=0.00;FS=2.646;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.697;QD=23.27;ReadPosRankSum=2.405;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3816,423,0 chrXV 492191 . C G 3541.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.2935;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.93;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3541,390,0 chrXV 494047 . G A 4350.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.02;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4350,460,0 chrXV 494421 . G C 5406.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=12.1051;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.87;SB=-3.055e+03 GT:AD:DP:GQ:PL 1/1:0,253:259:99:5406,600,0 chrXV 494979 . T C 3981.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.182;DP=166;Dels=0.00;FS=2.884;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.363;QD=23.98;ReadPosRankSum=2.405;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:2,163:166:99:3981,418,0 chrXV 495292 . T C 6279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=270;Dels=0.00;FS=3.059;HaplotypeScore=10.0491;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.470;QD=23.26;ReadPosRankSum=1.693;SB=-3.494e+03 GT:AD:DP:GQ:PL 1/1:1,268:270:99:6279,682,0 chrXV 495525 . A C 5247.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=267;Dels=0.00;FS=5.592;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.823;QD=19.65;ReadPosRankSum=2.951;SB=-2.782e+03 GT:AD:DP:GQ:PL 1/1:3,263:267:99:5247,567,0 chrXV 495528 . T C 5189.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.81;SB=-2.835e+03 GT:AD:DP:GQ:PL 1/1:0,260:262:99:5189,570,0 chrXV 495565 . A G 6035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=20.6069;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-1.649;QD=20.53;ReadPosRankSum=1.685;SB=-2.985e+03 GT:AD:DP:GQ:PL 1/1:1,291:293:99:6035,669,0 chrXV 495973 . A G 4604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=206;Dels=0.00;FS=6.523;HaplotypeScore=15.2062;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.096;QD=22.35;ReadPosRankSum=2.378;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4604,510,0 chrXV 496087 . G A 5715.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=15.5029;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.09;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:5715,619,0 chrXV 496218 . T C 2947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=4.978;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.873;QD=22.67;ReadPosRankSum=1.678;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2980,330,0 chrXV 496287 . A G 2681 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.8429;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.11;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2714,297,0 chrXV 496393 . C T 2272 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2371;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2305,246,0 chrXV 496482 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.74;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2903,315,0 chrXV 496760 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=165;Dels=0.00;FS=3.489;HaplotypeScore=15.1829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.456;QD=23.70;ReadPosRankSum=1.711;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:3911,429,0 chrXV 497076 . G C 1540 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=17.30;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1573,180,0 chrXV 497456 . C G 1732 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=25.10;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1765,192,0 chrXV 497811 . A G 3983.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.29;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3983,444,0 chrXV 498444 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.386;QD=24.88;ReadPosRankSum=-1.410;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3508,375,0 chrXV 498889 . G A 4942.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.6503;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.698;QD=24.34;ReadPosRankSum=-0.267;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:1,200:203:99:4942,537,0 chrXV 499606 . G A 3179 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=15.9645;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.48;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3212,345,0 chrXV 500448 . A G 3882.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.485;QD=22.18;ReadPosRankSum=1.692;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3882,426,0 chrXV 500665 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.56;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2831,312,0 chrXV 500968 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.2295;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.45;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:3082,330,0 chrXV 501561 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.7499;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3032,324,0 chrXV 501598 . C T 3087 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3120,339,0 chrXV 502826 . A G 3413.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.74;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3413,372,0 chrXV 503508 . A G 3859.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.4339;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.90;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3859,420,0 chrXV 503561 . G C 4037.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:4037,456,0 chrXV 503975 . T C 4015.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.9816;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.81;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4015,441,0 chrXV 504742 . C A 2868 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=144.9437;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=17.38;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2901,315,0 chrXV 504794 . A T 2719 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.76;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2752,291,0 chrXV 504928 . T G 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.138;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=-0.251;QD=24.18;ReadPosRankSum=1.682;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3361,363,0 chrXV 504988 . A G 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=1.428;QD=19.37;ReadPosRankSum=1.671;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2241,246,0 chrXV 504994 . T A 2110 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=18.84;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2143,228,0 chrXV 505483 . G A 2100 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.58;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2133,222,0 chrXV 505528 . G A 1864 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.26;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1897,201,0 chrXV 505541 . C G 1877 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=18.77;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1910,213,0 chrXV 507308 . A G 2808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.244;DP=132;Dels=0.00;FS=16.710;HaplotypeScore=17.4052;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.943;QD=21.27;ReadPosRankSum=3.364;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:4,127:132:99:2841,321,0 chrXV 508274 . G A 4093.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.3697;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.43;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4093,435,0 chrXV 508352 . C A 2870 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=13.8396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2903,309,0 chrXV 508404 . A C 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.311;QD=24.26;ReadPosRankSum=1.710;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3785,417,0 chrXV 508729 . G A 5084.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=16.0178;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=22.60;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:5084,558,0 chrXV 508868 . A G 5308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.178;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=17.1468;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.373;QD=21.58;ReadPosRankSum=2.409;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:2,242:246:99:5308,573,0 chrXV 508918 . G T 4228.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=19.1123;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.25;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:0,184:190:99:4228,465,0 chrXV 509034 . T G 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.9214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.936;QD=20.72;ReadPosRankSum=2.417;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3183,354,0 chrXV 509230 . G A 4015.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4015,429,0 chrXV 509633 . C T 4232.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.51;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4232,462,0 chrXV 509814 . C T 3625.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.9932;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.10;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3625,384,0 chrXV 510458 . T A 3311.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.36;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3311,357,0 chrXV 510666 . C T 4038.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.1168;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.48;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4038,426,0 chrXV 510683 . C G 3816.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.44;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3816,417,0 chrXV 511004 . T C 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=150;Dels=0.00;FS=2.995;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.794;QD=21.09;ReadPosRankSum=2.349;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:2,145:150:99:3197,357,0 chrXV 511376 . C T 2850 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.92;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2883,312,0 chrXV 511443 . T C 3326.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.8678;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.42;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3326,369,0 chrXV 511738 . A T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=0.22;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:6:57,6,0 chrXV 511893 . C T 3408.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.9356;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.00;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3408,363,0 chrXV 513454 . A G 3560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=154;Dels=0.00;FS=4.184;HaplotypeScore=15.9041;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.208;QD=23.12;ReadPosRankSum=1.709;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:3560,390,0 chrXV 513597 . G C 3550.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.13;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3550,396,0 chrXV 514184 . A G 2960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=3.552;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.705;QD=20.27;ReadPosRankSum=1.708;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2993,333,0 chrXV 514359 . C T 3292.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.7687;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.97;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3292,363,0 chrXV 514366 . C T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.7055;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.90;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3283,354,0 chrXV 514405 . G T 3730.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.0480;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.38;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3730,396,0 chrXV 514625 . C T 6005.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=25.77;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:6005,631,0 chrXV 514715 . T C 4700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.708;DP=218;Dels=0.00;FS=10.297;HaplotypeScore=15.8659;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.412;QD=21.56;ReadPosRankSum=2.903;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:3,214:218:99:4700,531,0 chrXV 514957 . T C 2319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=121;Dels=0.00;FS=3.869;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.081;QD=19.17;ReadPosRankSum=1.643;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,116:121:99:2352,267,0 chrXV 515214 . G A 4156.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.9223;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.65;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4156,430,0 chrXV 515356 . A G 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=207;Dels=0.00;FS=2.919;HaplotypeScore=11.0354;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.072;QD=21.28;ReadPosRankSum=2.342;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:2,203:207:99:4405,477,0 chrXV 515426 . C T 3948.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.56;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3948,435,0 chrXV 515498 . C T 4250.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.15;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4250,448,0 chrXV 515808 . A G 4790.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.101;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.8066;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.684;QD=22.18;ReadPosRankSum=1.101;SB=-2.763e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4790,519,0 chrXV 516270 . C T 3196 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=21.59;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3229,342,0 chrXV 516273 . T G 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=-0.146;QD=20.14;ReadPosRankSum=1.610;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,141:146:99:2974,330,0 chrXV 516309 . A C 2473 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.63;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2506,273,0 chrXV 516323 . G A 2369 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=19.10;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2402,264,0 chrXV 516797 . C A 3537.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7469;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=24.91;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3537,372,0 chrXV 516821 . T C 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=3.468;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-1.138;QD=20.29;ReadPosRankSum=1.683;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2874,324,0 chrXV 516832 . C T 3074 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6334;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=20.63;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3107,327,0 chrXV 517216 . T C 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=4.554;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.814;QD=22.74;ReadPosRankSum=1.703;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2694,294,0 chrXV 517639 . G A 2709 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=21.33;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2742,288,0 chrXV 517647 . C T 2318 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=17.97;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2351,252,0 chrXV 517848 . A G 4347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=218;Dels=0.00;FS=7.481;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-1.035;QD=19.94;ReadPosRankSum=2.427;SB=-2.433e+03 GT:AD:DP:GQ:PL 1/1:2,215:218:99:4347,468,0 chrXV 517857 . A G 4272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=224;Dels=0.00;FS=3.274;HaplotypeScore=6.2291;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-0.478;QD=19.07;ReadPosRankSum=1.685;SB=-2.701e+03 GT:AD:DP:GQ:PL 1/1:1,220:224:99:4272,477,0 chrXV 519085 . T C 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.448;QD=23.54;ReadPosRankSum=1.672;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2764,303,0 chrXV 519111 . A C 3141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=147;Dels=0.00;FS=3.590;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.419;QD=21.37;ReadPosRankSum=1.636;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,143:147:99:3174,354,0 chrXV 520009 . G A 4916.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4916,531,0 chrXV 520650 . T C 4784.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.45;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4784,528,0 chrXV 520674 . C A 4293.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.9544;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.44;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4293,474,0 chrXV 520701 . A T 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=191;Dels=0.00;FS=3.979;HaplotypeScore=5.1654;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-0.328;QD=17.82;ReadPosRankSum=1.677;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:3404,375,0 chrXV 520709 . C T 3317.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.1213;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=18.63;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3317,357,0 chrXV 520782 . G A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.84;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3494,375,0 chrXV 520821 . A C 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=158;Dels=0.00;FS=5.526;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.892;QD=21.80;ReadPosRankSum=2.956;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3444,387,0 chrXV 521300 . C T 3123 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.4726;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.63;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3156,336,0 chrXV 521659 . G A 3890.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.76;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3890,409,0 chrXV 521727 . T C 4434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=192;Dels=0.00;FS=5.710;HaplotypeScore=12.0362;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.753;QD=23.09;ReadPosRankSum=2.963;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:3,188:192:99:4434,495,0 chrXV 522806 . A G 1345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.847;DP=91;Dels=0.00;FS=8.173;HaplotypeScore=10.4996;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=1;MQRankSum=1.280;QD=14.78;ReadPosRankSum=0.973;SB=-8.279e+02 GT:AD:DP:GQ:PL 1/1:8,83:91:99:1378,150,0 chrXV 523145 . C A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.93;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3268,348,0 chrXV 523213 . C T 4127.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.9624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4127,433,0 chrXV 523506 . C T 3806.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.64;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3806,414,0 chrXV 524085 . C T 4392.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.0354;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.68;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4392,466,0 chrXV 524541 . G A 4302.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.6078;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.38;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4302,456,0 chrXV 524664 . T C 3051 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.49;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3084,348,0 chrXV 524711 . T A 2693 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.07;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2726,288,0 chrXV 524727 . T C 2748 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.64;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2781,306,0 chrXV 524945 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.3884;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=25.36;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2468,258,0 chrXV 525016 . T C 2014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-0.253;QD=17.98;ReadPosRankSum=2.186;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2047,225,0 chrXV 525568 . T C 1811 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.12;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1844,204,0 chrXV 526708 . C A 3217.04 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.48;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3250,348,0 chrXV 526910 . G C 3419.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.95;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3419,369,0 chrXV 527323 . T C 3851.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=164;Dels=0.00;FS=2.686;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.822;QD=23.48;ReadPosRankSum=2.374;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3851,429,0 chrXV 528073 . T A 3033 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.06;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3066,330,0 chrXV 528085 . G T 2986 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.74;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3019,321,0 chrXV 528477 . C T 3063 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.31;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3096,339,0 chrXV 529675 . G A 4531.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.76;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4531,484,0 chrXV 529807 . G C 3860.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3860,432,0 chrXV 530451 . C T 3299.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.7109;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=22.44;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3299,375,0 chrXV 530491 . C A 3678.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.99;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3678,399,0 chrXV 530533 . C T 3730.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.1785;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.91;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3730,405,0 chrXV 530757 . G C 3477.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3477,381,0 chrXV 530989 . G A 3508.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3508,384,0 chrXV 531055 . T C 3604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=162;Dels=0.00;FS=5.853;HaplotypeScore=12.1772;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.631;QD=22.25;ReadPosRankSum=2.892;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:3,155:162:99:3604,399,0 chrXV 531232 . T C 2577 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.01;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2610,291,0 chrXV 531295 . A G 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.5157;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.322;QD=20.37;ReadPosRankSum=2.327;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:2,118:123:99:2539,285,0 chrXV 531643 . G A 2777 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2810,300,0 chrXV 532110 . C T 3313.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3313,351,0 chrXV 532281 . C T 2588 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.19;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2621,279,0 chrXV 532438 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.93;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2570,285,0 chrXV 532911 . G A 3759.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3759,396,0 chrXV 533064 . A G 2939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.782;QD=23.33;ReadPosRankSum=1.704;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2972,330,0 chrXV 533224 . A G 2991 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3024,342,0 chrXV 533375 . G A 2476 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.72;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2509,264,0 chrXV 533398 . A C 2743 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.10;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2776,303,0 chrXV 533423 . G A 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.5187;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.719;QD=21.43;ReadPosRankSum=-1.332;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2840,300,0 chrXV 533487 . T C 3210.99 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.27;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3244,363,0 chrXV 533520 . A G 3769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=174;Dels=0.00;FS=4.355;HaplotypeScore=22.8717;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.379;QD=21.66;ReadPosRankSum=1.712;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:1,168:174:99:3769,423,0 chrXV 533636 . T C 3480.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=150.7105;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=21.09;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3480,378,0 chrXV 533658 . C A 3136 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.9857;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=18.78;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3169,345,0 chrXV 533847 . C A 2920 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.47;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2953,321,0 chrXV 533983 . T C 3624.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=155;Dels=0.00;FS=6.105;HaplotypeScore=9.5285;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.024;QD=23.38;ReadPosRankSum=2.418;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3624,402,0 chrXV 534242 . A G 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.1601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.720;QD=22.04;ReadPosRankSum=1.713;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:3990,438,0 chrXV 536415 . G C 4131.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0735;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.19;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4131,447,0 chrXV 537057 . T C 75.51 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=7.55;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:108,12,0 chrXV 538230 . G A 3836.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.59;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3836,400,0 chrXV 541437 . C T 3703.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3703,399,0 chrXV 541647 . C T 3284.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3284,351,0 chrXV 541939 . T C 4780.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=206;Dels=0.00;FS=3.182;HaplotypeScore=7.8500;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.202;QD=23.20;ReadPosRankSum=1.665;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:4780,537,0 chrXV 542199 . G A 3438.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.47;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3438,369,0 chrXV 542472 . T G 3348.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3348,372,0 chrXV 542952 . A G 4426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=190;Dels=0.00;FS=4.841;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.302;QD=23.29;ReadPosRankSum=1.714;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,188:190:99:4426,507,0 chrXV 543276 . C T 4388.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.51;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4388,468,0 chrXV 544353 . A G 4464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=197;Dels=0.00;FS=11.196;HaplotypeScore=13.3874;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-1.311;QD=22.66;ReadPosRankSum=2.934;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:3,194:197:99:4464,495,0 chrXV 544389 . A G 4319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.287;DP=182;Dels=0.00;FS=13.602;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.206;QD=23.73;ReadPosRankSum=3.412;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:4,178:182:99:4319,477,0 chrXV 544647 . A G 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=0.707;QD=24.18;ReadPosRankSum=1.704;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:3080,339,0 chrXV 544675 . A T 2294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9987;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=0.429;QD=22.27;ReadPosRankSum=1.664;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2327,258,0 chrXV 544718 . C A 2393 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=20.11;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2426,261,0 chrXV 544722 . A G 2275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;MQRankSum=-0.144;QD=18.96;ReadPosRankSum=1.703;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2308,255,0 chrXV 544789 . T C 1778 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=16.16;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1811,204,0 chrXV 544812 . C T 1731 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=18.82;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1764,198,0 chrXV 544813 . G A 1751 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=19.03;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1784,195,0 chrXV 544845 . T C 1760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=101;Dels=0.00;FS=6.695;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;MQRankSum=-1.377;QD=17.43;ReadPosRankSum=2.401;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1793,198,0 chrXV 544857 . C T 1699 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=17.16;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1732,192,0 chrXV 544924 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=21.95;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2667,285,0 chrXV 544940 . C T 2612 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=19.64;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2645,288,0 chrXV 544949 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=19.01;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2694,294,0 chrXV 545061 . T C 3130 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=23.36;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3163,351,0 chrXV 545109 . G A 3887.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=24.29;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3887,417,0 chrXV 545170 . T C 5586.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.283;DP=228;Dels=0.00;FS=8.447;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.907;QD=24.50;ReadPosRankSum=3.422;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:4,222:228:99:5586,615,0 chrXV 545340 . T C 4001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=4.170;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.712;QD=22.73;ReadPosRankSum=1.692;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4001,441,0 chrXV 545406 . T C 4909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=223;Dels=0.00;FS=9.822;HaplotypeScore=17.9432;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.653;QD=22.01;ReadPosRankSum=2.394;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:2,220:223:99:4909,558,0 chrXV 545494 . T C 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=184;Dels=0.00;FS=8.166;HaplotypeScore=12.6982;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.522;QD=21.68;ReadPosRankSum=2.409;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:2,179:184:99:3990,438,0 chrXV 545901 . T C 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.280;QD=22.44;ReadPosRankSum=1.656;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3107,348,0 chrXV 546123 . A C 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.457;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.430;QD=22.07;ReadPosRankSum=1.680;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2991,330,0 chrXV 546623 . G T 2309 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.76;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2342,252,0 chrXV 546624 . C T 2327 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=18.04;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2360,252,0 chrXV 547315 . A T 3797.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.1259;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3797,414,0 chrXV 547477 . T C 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=143;Dels=0.00;FS=6.368;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.229;QD=22.43;ReadPosRankSum=2.415;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:3241,360,0 chrXV 547969 . A G 3117 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.79;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3150,345,0 chrXV 548086 . G A 4113.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.64;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4113,450,0 chrXV 548158 . C T 2842 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=21.21;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2875,312,0 chrXV 548170 . T C 2416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=2.849;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=-2.001;QD=17.38;ReadPosRankSum=2.414;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:2,135:139:99:2449,276,0 chrXV 548173 . C T 2414 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.5583;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=17.24;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2447,267,0 chrXV 548302 . T G 3912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=169;Dels=0.00;FS=7.222;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.199;QD=23.15;ReadPosRankSum=2.405;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:2,165:169:99:3912,429,0 chrXV 548428 . C T 3904.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8139;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=23.80;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3904,429,0 chrXV 548602 . C T 2967 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6087;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=23.00;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3000,330,0 chrXV 548673 . C A 2743 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.12;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2776,300,0 chrXV 549039 . G C 3488.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.40;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3488,384,0 chrXV 549059 . G A 3935.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.23;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3935,423,0 chrXV 549127 . G A 2874 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.83;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2907,312,0 chrXV 549281 . G A 2908 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.03;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2941,312,0 chrXV 549308 . A G 2301 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.17;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2334,255,0 chrXV 549314 . C T 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.449;DP=110;Dels=0.00;FS=3.338;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=0.693;QD=19.16;ReadPosRankSum=0.724;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2141,225,0 chrXV 549638 . T C 3608.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.8731;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.98;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3608,390,0 chrXV 549932 . C T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3295,354,0 chrXV 550085 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2870,315,0 chrXV 550196 . C T 3221.92 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.98;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3255,351,0 chrXV 550382 . C T 2567 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=22.92;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2600,276,0 chrXV 550436 . A G 2653 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.75;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2686,294,0 chrXV 550487 . G A 1587 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=18.45;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1620,174,0 chrXV 550493 . G C 1421 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=16.52;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1454,162,0 chrXV 550544 . G A 605 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1390;MLEAC=2;MLEAF=1.00;MQ=33.34;MQ0=0;QD=7.03;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:69:638,69,0 chrXV 550557 . T C 739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=90;Dels=0.00;FS=7.328;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=30.26;MQ0=0;MQRankSum=-0.424;QD=8.21;ReadPosRankSum=2.395;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:87:772,87,0 chrXV 550566 . T A 791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=90;Dels=0.00;FS=3.059;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;MQRankSum=-2.422;QD=8.79;ReadPosRankSum=2.395;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:90:824,90,0 chrXV 550568 . T A 753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.745;DP=92;Dels=0.00;FS=6.166;HaplotypeScore=80.3704;MLEAC=2;MLEAF=1.00;MQ=32.57;MQ0=0;MQRankSum=-2.723;QD=8.18;ReadPosRankSum=1.589;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:3,89:92:87:786,87,0 chrXV 550608 . C T 1995 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=16.62;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2028,216,0 chrXV 550611 . G C 2077 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=15.39;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2110,231,0 chrXV 550623 . T C 2494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-1.342;QD=16.52;ReadPosRankSum=1.663;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2527,282,0 chrXV 550695 . A C 3043 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=23.05;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3076,336,0 chrXV 550804 . A G 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=144;Dels=0.00;FS=2.964;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;MQRankSum=1.195;QD=20.21;ReadPosRankSum=2.346;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:2943,324,0 chrXV 550812 . C T 3102 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=20.54;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3135,348,0 chrXV 550922 . C G 2801 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.45;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2834,312,0 chrXV 551128 . A G 4101.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=4.277;HaplotypeScore=13.6562;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.814;QD=24.56;ReadPosRankSum=1.690;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:4101,453,0 chrXV 551234 . A G 5302.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.5041;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=24.66;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5302,579,0 chrXV 551392 . G A 5061.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=7.4155;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=21.91;SB=-2.388e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5061,541,0 chrXV 551410 . G A 4558.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=20.26;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4558,484,0 chrXV 551437 . A G 4381.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.407;DP=230;Dels=0.00;FS=5.219;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-0.550;QD=19.05;ReadPosRankSum=3.415;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:4,226:230:99:4381,489,0 chrXV 551881 . A G 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.282;QD=23.69;ReadPosRankSum=1.665;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3672,405,0 chrXV 551947 . T C 3661.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3661,408,0 chrXV 552113 . A G 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=150;Dels=0.00;FS=6.779;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.040;QD=20.33;ReadPosRankSum=2.417;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3083,348,0 chrXV 552938 . C G 3370.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.30;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3370,369,0 chrXV 553024 . G T 2476 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2509,267,0 chrXV 553076 . C T 2566 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.3337;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.91;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2599,276,0 chrXV 553641 . C A 3907.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=22.07;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3907,429,0 chrXV 553642 . C A 3965.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=22.40;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3965,426,0 chrXV 554353 . T A 5360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=229;Dels=0.00;FS=2.904;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.241;QD=23.41;ReadPosRankSum=2.417;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:2,227:229:99:5360,565,0 chrXV 554402 . C A 5889.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=15.1080;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.56;SB=-2.713e+03 GT:AD:DP:GQ:PL 1/1:0,247:250:99:5889,622,0 chrXV 554618 . A G 4828.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=10.5807;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.46;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:4828,537,0 chrXV 554893 . T C 4924.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=16.6767;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.14;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4924,546,0 chrXV 554987 . C T 4122.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.6705;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,180:186:99:4122,441,0 chrXV 555037 . G A 4794.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4794,511,0 chrXV 555166 . G A 4140.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.3521;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.87;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4140,450,0 chrXV 555261 . A G 3484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=155;Dels=0.00;FS=9.464;HaplotypeScore=9.7943;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.314;QD=22.48;ReadPosRankSum=2.928;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:3,151:155:99:3484,381,0 chrXV 557021 . T A 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.6731;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.701;QD=22.35;ReadPosRankSum=0.701;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3375,343,0 chrXV 557056 . T C 3315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.376;DP=149;Dels=0.00;FS=3.193;HaplotypeScore=12.2771;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.451;QD=22.25;ReadPosRankSum=-0.332;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:1,145:149:99:3315,338,0 chrXV 557623 . T C 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=3.629;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.466;QD=21.72;ReadPosRankSum=1.708;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3139,351,0 chrXV 557722 . T C 2321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=104;Dels=0.00;FS=7.854;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.944;QD=22.32;ReadPosRankSum=2.354;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:2,101:104:99:2354,261,0 chrXV 557798 . C T 3120 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3153,330,0 chrXV 557867 . C A 2979 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.27;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3012,318,0 chrXV 558497 . G A 2924 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.9944;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.77;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2957,306,0 chrXV 559459 . T C 4887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=224;Dels=0.00;FS=3.732;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.187;QD=21.82;ReadPosRankSum=1.716;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:1,221:224:99:4887,543,0 chrXV 559483 . G A 4862.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.72;SB=-2.358e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4862,525,0 chrXV 560186 . A G 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=0.319;QD=18.52;ReadPosRankSum=1.674;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3334,360,0 chrXV 560189 . T A 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=179;Dels=0.00;FS=8.069;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=-0.981;QD=18.63;ReadPosRankSum=2.395;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3334,357,0 chrXV 560585 . A G 4829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;DP=203;Dels=0.00;FS=13.931;HaplotypeScore=5.5545;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=1.254;QD=23.79;ReadPosRankSum=2.926;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:3,199:203:99:4829,525,0 chrXV 560610 . A G 4257.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=183;Dels=0.00;FS=13.679;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.906;QD=23.26;ReadPosRankSum=2.961;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:3,178:183:99:4257,462,0 chrXV 560807 . A G 2032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.998;DP=151;Dels=0.00;FS=15.102;HaplotypeScore=35.3498;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.730;QD=13.46;ReadPosRankSum=3.908;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:11,138:151:99:2065,231,0 chrXV 562162 . C T 3746.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.32;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3746,399,0 chrXV 562357 . G A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.62;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4204,450,0 chrXV 562468 . A G 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=141;Dels=0.00;FS=2.859;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.595;QD=22.65;ReadPosRankSum=2.345;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3226,354,0 chrXV 562581 . C A 2738 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=20.90;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2771,294,0 chrXV 562603 . A G 2602 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.17;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2635,294,0 chrXV 562655 . A G 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=133;Dels=0.00;FS=11.308;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-0.397;QD=20.14;ReadPosRankSum=2.947;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:3,129:133:99:2711,300,0 chrXV 562672 . G C 2923 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.73;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2956,330,0 chrXV 563008 . G A 3200 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.53;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3233,345,0 chrXV 563031 . A G 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.282;DP=120;Dels=0.00;FS=8.791;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.914;QD=21.50;ReadPosRankSum=3.355;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:4,116:120:99:2613,285,0 chrXV 563080 . G A 2515 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.73;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2548,273,0 chrXV 563355 . G A 3204 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3237,345,0 chrXV 563766 . T C 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.779;QD=23.45;ReadPosRankSum=1.709;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3517,384,0 chrXV 563794 . A G 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.552;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=1.183;QD=20.10;ReadPosRankSum=1.684;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2948,324,0 chrXV 564195 . G A 3579.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=23.55;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3579,384,0 chrXV 564207 . T G 3460.01 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=21.23;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3460,384,0 chrXV 564208 . C A 3676.01 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=22.55;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3676,382,0 chrXV 564213 . T C 3590.01 SnpCluster AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=21.63;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3590,387,0 chrXV 564299 . G C 2663 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.01;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2696,303,0 chrXV 564451 . A G 2682 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.35;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2715,300,0 chrXV 564554 . T C 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.225;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-0.313;QD=22.87;ReadPosRankSum=2.385;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3522,387,0 chrXV 564575 . C T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.57;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3771,402,0 chrXV 565748 . C T 2909 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.08;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2942,315,0 chrXV 565891 . T C 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.770;DP=122;Dels=0.00;FS=11.573;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=2.325;QD=20.68;ReadPosRankSum=3.770;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:5,116:122:99:2556,288,0 chrXV 566430 . G T 2971 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.3693;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.85;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:3004,318,0 chrXV 566502 . A G 2569 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.23;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2602,291,0 chrXV 566564 . A C 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.060;QD=22.25;ReadPosRankSum=1.697;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2236,255,0 chrXV 566680 . A G 2922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=3.909;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.127;QD=23.76;ReadPosRankSum=1.704;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2955,324,0 chrXV 568462 . A T 2625 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.67;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2658,279,0 chrXV 568494 . A G 2283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=114;Dels=0.00;FS=2.645;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.492;QD=20.03;ReadPosRankSum=2.406;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2316,255,0 chrXV 569770 . C T 3002 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.7220;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.74;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3035,333,0 chrXV 569815 . A T 2890 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.69;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2923,321,0 chrXV 570373 . A T 4254.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4254,454,0 chrXV 570534 . T G 3871.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3871,438,0 chrXV 571256 . A C 3769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;DP=174;Dels=0.00;FS=2.581;HaplotypeScore=18.2776;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-1.413;QD=21.66;ReadPosRankSum=2.913;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:3,170:174:99:3769,411,0 chrXV 571327 . A C 4208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=182;Dels=0.00;FS=6.544;HaplotypeScore=13.0180;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.184;QD=23.12;ReadPosRankSum=2.409;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:4208,468,0 chrXV 571484 . C T 2861 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.19;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2894,312,0 chrXV 571487 . G A 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.396;DP=136;Dels=0.00;FS=3.076;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=1.163;QD=19.87;ReadPosRankSum=1.603;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2735,297,0 chrXV 571568 . A T 4235.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.3779;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.27;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4235,453,0 chrXV 571716 . G A 2491 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.09;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2524,279,0 chrXV 571717 . C T 2436 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.80;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2469,267,0 chrXV 571805 . T C 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.606;QD=22.64;ReadPosRankSum=1.669;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2523,282,0 chrXV 571837 . T C 2723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=3.340;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.422;QD=21.96;ReadPosRankSum=1.591;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2756,300,0 chrXV 571916 . A G 2870 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.72;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2903,318,0 chrXV 571945 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=24.49;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2580,270,0 chrXV 572271 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.36;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2774,291,0 chrXV 572718 . A C 4906.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.6818;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=25.03;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4906,543,0 chrXV 572815 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3603,387,0 chrXV 572949 . A G 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.000;DP=160;Dels=0.00;FS=4.930;HaplotypeScore=9.5677;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.098;QD=18.71;ReadPosRankSum=3.404;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:4,156:160:99:3026,336,0 chrXV 573210 . T C 5380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=-0.688;QD=22.42;ReadPosRankSum=1.689;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:1,238:240:99:5380,594,0 chrXV 573228 . T C 5011.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=19.81;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5011,552,0 chrXV 573248 . A G 4394.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=9.6903;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=19.10;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:4394,480,0 chrXV 573324 . A T 5639.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=23.79;SB=-2.915e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5639,607,0 chrXV 573358 . A G 5124.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=241;Dels=0.00;FS=2.561;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-0.079;QD=21.26;ReadPosRankSum=2.963;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:3,238:241:99:5124,570,0 chrXV 573377 . A G 4632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.971;DP=238;Dels=0.00;FS=2.574;HaplotypeScore=4.7644;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=-0.363;QD=19.46;ReadPosRankSum=2.810;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:3,235:238:99:4632,510,0 chrXV 573378 . A G 4598.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=3.7910;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=19.65;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:4598,510,0 chrXV 573534 . T C 3617.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.2564;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.28;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3617,408,0 chrXV 573819 . A G 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.787;QD=23.14;ReadPosRankSum=1.708;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3332,366,0 chrXV 574049 . A G 3712.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3712,405,0 chrXV 574266 . A T 5175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.806;QD=25.37;ReadPosRankSum=1.698;SB=-2.471e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:5175,541,0 chrXV 574378 . G A 5084.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.09;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5084,541,0 chrXV 574716 . C T 3862.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.13;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3862,414,0 chrXV 574823 . C T 3280.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.8919;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.25;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3280,351,0 chrXV 574857 . C G 2905 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.52;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,129:135:99:2938,321,0 chrXV 575856 . G A 272.34 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.896;DP=273;Dels=0.00;FS=41.222;HaplotypeScore=2.5540;MLEAC=1;MLEAF=0.500;MQ=6.86;MQ0=239;MQRankSum=-1.702;QD=1.00;ReadPosRankSum=0.000;SB=-1.835e+01 GT:AD:DP:GQ:PL 0/1:135,137:273:8:302,0,8 chrXV 577503 . C T 149.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;DP=175;Dels=0.00;FS=124.039;HaplotypeScore=15.0826;MLEAC=1;MLEAF=0.500;MQ=36.80;MQ0=40;MQRankSum=-4.899;QD=0.85;ReadPosRankSum=1.296;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:117,57:175:99:179,0,1996 chrXV 577509 . A G 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.941;DP=167;Dels=0.00;FS=118.200;HaplotypeScore=12.7855;MLEAC=1;MLEAF=0.500;MQ=34.47;MQ0=46;MQRankSum=-5.207;QD=0.47;ReadPosRankSum=1.843;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,52:167:99:109,0,1740 chrXV 577827 . C T 2716 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.04;FS=0.000;HaplotypeScore=13.7791;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.82;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2749,291,0 chrXV 577890 . C T 2185 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=16.8186;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.07;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2218,234,0 chrXV 577919 . C T 2107 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.46;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2140,231,0 chrXV 577985 . G T 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.1847;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.687;QD=24.34;ReadPosRankSum=1.551;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3772,402,0 chrXV 578255 . A G 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=154;Dels=0.00;FS=3.125;HaplotypeScore=11.2426;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.517;QD=23.95;ReadPosRankSum=1.710;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3689,399,0 chrXV 578839 . C T 4377.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3550;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.73;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4377,477,0 chrXV 578881 . T G 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=164;Dels=0.00;FS=3.064;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.000;QD=22.57;ReadPosRankSum=1.689;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3702,414,0 chrXV 578986 . T C 2582 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2615,288,0 chrXV 579079 . A G 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.6450;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.610;QD=23.97;ReadPosRankSum=1.708;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3404,372,0 chrXV 579185 . G A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.8366;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.00;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3312,363,0 chrXV 579277 . G A 4674.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=18.2829;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.73;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4674,496,0 chrXV 579592 . G A 5018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.7921;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=1.205;QD=22.81;ReadPosRankSum=-0.024;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:5018,538,0 chrXV 580206 . A G 1428 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.96;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1461,159,0 chrXV 581014 . T A 4610.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.1073;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.01;SB=-2.403e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4610,493,0 chrXV 581340 . C A 2632 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.69;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2665,282,0 chrXV 581450 . T C 2115 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.50;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2148,237,0 chrXV 581771 . T C 3082 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.08;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3115,345,0 chrXV 581790 . C A 2832 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.66;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2865,303,0 chrXV 581954 . C T 4693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.498;QD=24.44;ReadPosRankSum=0.235;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4693,501,0 chrXV 582005 . C T 4509.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.10;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4509,475,0 chrXV 582404 . T C 2632 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.29;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2665,294,0 chrXV 582530 . G A 2539 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3291;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.73;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2572,276,0 chrXV 582590 . G A 2713 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2746,294,0 chrXV 582656 . T C 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=4.019;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.607;QD=21.69;ReadPosRankSum=1.638;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2441,276,0 chrXV 583109 . G A 4391.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.2511;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.86;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4391,486,0 chrXV 583279 . G A 4298.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.86;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4298,465,0 chrXV 583875 . T C 2108 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8009;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.96;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2141,243,0 chrXV 584081 . T C 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.256;DP=105;Dels=0.00;FS=8.615;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.276;QD=21.58;ReadPosRankSum=3.323;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:4,101:105:99:2299,249,0 chrXV 584102 . T C 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=90;Dels=0.00;FS=2.723;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-1.536;QD=21.94;ReadPosRankSum=2.394;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:2,87:90:99:2008,222,0 chrXV 584552 . G A 4383.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4383,471,0 chrXV 584993 . C T 4734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.293;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.9866;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.465;QD=22.87;ReadPosRankSum=-0.279;SB=-2.667e+03 GT:AD:DP:GQ:PL 1/1:1,204:207:99:4734,496,0 chrXV 585683 . T C 6193.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.79;SB=-3.786e+03 GT:AD:DP:GQ:PL 1/1:0,313:313:99:6193,678,0 chrXV 585698 . T C 5727.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.59;SB=-3.787e+03 GT:AD:DP:GQ:PL 1/1:0,306:308:99:5727,636,0 chrXV 585808 . T C 7293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=313;Dels=0.00;FS=3.421;HaplotypeScore=13.5923;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;MQRankSum=1.564;QD=23.30;ReadPosRankSum=1.687;SB=-3.782e+03 GT:AD:DP:GQ:PL 1/1:1,309:313:99:7293,813,0 chrXV 586304 . T C 4381.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,203:207:99:4381,483,0 chrXV 586418 . A G 4107.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4107,450,0 chrXV 586655 . A T 3870.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.1532;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.31;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3870,426,0 chrXV 586731 . G A 3002 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.91;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3035,324,0 chrXV 586872 . T C 3599.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.92;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3599,393,0 chrXV 587058 . T C 5248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.4230;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.239;QD=23.32;ReadPosRankSum=1.701;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:1,224:225:99:5248,579,0 chrXV 587316 . C T 4964.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=11.9835;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:4964,543,0 chrXV 587394 . T C 4599.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.80;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4599,516,0 chrXV 587428 . A G 4184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=186;Dels=0.00;FS=2.609;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.029;QD=22.49;ReadPosRankSum=2.410;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,183:186:99:4184,462,0 chrXV 587565 . C T 3567.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.4442;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.01;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,152:155:99:3567,396,0 chrXV 588202 . T C 5360.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=21.6411;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=18.61;SB=-3.755e+03 GT:AD:DP:GQ:PL 1/1:0,287:288:99:5360,588,0 chrXV 588756 . G A 3911.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.01;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3911,426,0 chrXV 589105 . C T 4574.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.95;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4574,481,0 chrXV 589146 . T C 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=3.326;HaplotypeScore=3.1424;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=0.055;QD=18.63;ReadPosRankSum=1.622;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:2976,336,0 chrXV 589149 . C G 2849 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=18.62;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2882,315,0 chrXV 589189 . T C 3380.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=19.54;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3380,369,0 chrXV 589303 . G A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.0942;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.41;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3306,357,0 chrXV 589370 . T C 3008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=139;Dels=0.00;FS=3.796;HaplotypeScore=13.3633;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.187;QD=21.64;ReadPosRankSum=1.707;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3041,336,0 chrXV 589545 . C T 2658 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2691,297,0 chrXV 589621 . A G 2740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=126;Dels=0.00;FS=7.337;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-0.403;QD=21.75;ReadPosRankSum=2.391;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2773,303,0 chrXV 589839 . C T 2131 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.5981;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.67;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2164,228,0 chrXV 589882 . C T 1860 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.37;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1893,201,0 chrXV 589883 . G T 1856 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.54;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1889,198,0 chrXV 590236 . G A 4049.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.82;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4049,430,0 chrXV 590260 . A T 4147.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=168;Dels=0.00;FS=3.222;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-0.268;QD=24.68;ReadPosRankSum=1.691;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4147,436,0 chrXV 590504 . G A 2700 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.48;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2733,294,0 chrXV 590578 . C T 2787 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.62;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2820,300,0 chrXV 591118 . G A 3679.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.30;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3679,390,0 chrXV 591121 . A G 3582.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=20.95;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3582,396,0 chrXV 591751 . C T 2465 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.37;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2498,264,0 chrXV 591769 . A G 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=124;Dels=0.00;FS=2.883;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.982;QD=19.87;ReadPosRankSum=2.390;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2497,279,0 chrXV 592863 . T G 4017.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.2352;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.05;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4017,435,0 chrXV 592893 . C T 3690.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.4007;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.78;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3690,396,0 chrXV 592988 . T C 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=3.658;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.426;QD=21.32;ReadPosRankSum=1.652;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2804,312,0 chrXV 593004 . G T 2716 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.73;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2749,297,0 chrXV 593104 . C A 4135.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.52;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:4135,441,0 chrXV 593326 . G A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.0028;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.70;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3645,387,0 chrXV 593587 . A G 2500 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.52;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2533,279,0 chrXV 594122 . G A 2524 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=23.81;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2557,270,0 chrXV 594267 . C T 2112 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=0;QD=21.77;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2145,234,0 chrXV 594303 . A G 109.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.005;DP=81;Dels=0.00;FS=9.508;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.11;MQ0=0;MQRankSum=0.034;QD=1.35;ReadPosRankSum=-5.301;SB=2.87 GT:AD:DP:GQ:PL 1/1:70,11:81:18:142,18,0 chrXV 594439 . T A 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;MQRankSum=1.009;QD=19.18;ReadPosRankSum=1.580;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1778,207,0 chrXV 594452 . C G 1471 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.36;MQ0=0;QD=17.31;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1504,174,0 chrXV 594454 . C G 1372 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.15;MQ0=0;QD=17.37;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1405,165,0 chrXV 594455 . G C 1380 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.81;MQ0=0;QD=17.69;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1413,165,0 chrXV 594499 . G C 2063 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3955;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=19.84;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2096,231,0 chrXV 594548 . G A 3411.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=24.19;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3411,363,0 chrXV 594586 . G A 2933 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=24.24;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2966,315,0 chrXV 594667 . A G 1202 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.48;MQ0=0;QD=19.39;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1235,144,0 chrXV 594673 . T C 1118 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.06;MQ0=0;QD=18.63;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1151,135,0 chrXV 594677 . G A 1092 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.28;MQ0=0;QD=17.33;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:99:1125,129,0 chrXV 594684 . A G 1147 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=35.82;MQ0=0;QD=18.50;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1180,135,0 chrXV 594720 . A C 1418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;MQRankSum=-1.732;QD=20.55;ReadPosRankSum=1.682;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1451,165,0 chrXV 594737 . C T 1797 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=23.96;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1830,192,0 chrXV 594821 . T C 597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=3;MQRankSum=-1.459;QD=14.21;ReadPosRankSum=-1.733;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:4,37:42:54:630,54,0 chrXV 600564 . T C 69.51 filter AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.45;MQ0=129;QD=0.47;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:127,20:149:12:102,12,0 chrXV 600572 . G A 69.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.06;MQ0=113;QD=0.52;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:110,23:133:12:102,12,0 chrXV 600575 . A G 69.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.36;MQ0=106;QD=0.55;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:105,21:126:12:102,12,0 chrXV 600576 . T G 71.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.45;MQ0=104;QD=0.58;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:102,20:124:12:104,12,0 chrXV 600580 . G A 73.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.79;MQ0=97;QD=0.63;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:96,21:117:12:106,12,0 chrXV 600588 . G A 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.40;MQ0=85;QD=0.46;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:83,21:104:9:80,9,0 chrXV 600591 . A G 53.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.64;MQ0=81;QD=0.54;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:81,19:100:9:86,9,0 chrXV 600597 . G T 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.40;MQ0=70;QD=0.56;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:67,19:89:9:82,9,0 chrXV 600611 . A C 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.00;MQ0=48;MQRankSum=1.073;QD=0.33;ReadPosRankSum=-1.239;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:49,20:69:6:54,6,0 chrXV 600618 . A T 49.97 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.80;MQ0=45;QD=0.78;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:45,19:64:9:82,9,0 chrXV 600757 . C A 373 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.39;MQ0=0;QD=13.81;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:45:406,45,0 chrXV 600843 . G A 1405 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;QD=21.62;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1438,159,0 chrXV 600945 . A G 2214 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=25.45;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2247,246,0 chrXV 601015 . G A 1957 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.76;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1990,222,0 chrXV 601255 . C T 1784 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3257;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.51;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1817,201,0 chrXV 601307 . C T 2191 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.31;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,90:94:99:2224,231,0 chrXV 601325 . C G 2245 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.2069;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.23;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2278,255,0 chrXV 601382 . T A 2368 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.92;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2401,258,0 chrXV 601569 . C T 2717 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.83;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2750,291,0 chrXV 601702 . C G 3698.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.83;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,157:162:99:3698,405,0 chrXV 601746 . C T 3681.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.86;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3681,399,0 chrXV 601761 . A G 3307.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.97;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3307,366,0 chrXV 602229 . G A 3041 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.34;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3074,327,0 chrXV 602449 . G C 2777 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.8210;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2810,309,0 chrXV 602578 . A G 3187 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.96;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3220,357,0 chrXV 602664 . T C 4158.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=25.35;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4158,456,0 chrXV 602865 . C T 2988 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.9472;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.30;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3021,321,0 chrXV 603549 . T C 3395.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=153;Dels=0.00;FS=6.702;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=0.924;QD=22.19;ReadPosRankSum=2.417;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3395,369,0 chrXV 603564 . C G 3469.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.1451;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=20.90;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,162:166:99:3469,381,0 chrXV 603992 . A G 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.296;DP=141;Dels=0.00;FS=12.488;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.445;QD=22.70;ReadPosRankSum=3.308;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:4,136:141:99:3233,357,0 chrXV 604072 . T C 3982.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.43;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3982,435,0 chrXV 604413 . A G 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=179;Dels=0.00;FS=10.185;HaplotypeScore=5.5028;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-0.870;QD=21.59;ReadPosRankSum=2.938;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:3,175:179:99:3865,423,0 chrXV 604415 . C G 3758.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.47;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3758,423,0 chrXV 604572 . A T 3453.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.49;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3453,375,0 chrXV 604762 . G C 3608.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3608,399,0 chrXV 605294 . C T 3559.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.0190;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.06;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3559,373,0 chrXV 605644 . C T 2877 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.4220;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.80;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2910,306,0 chrXV 606043 . C T 3558.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.5544;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3558,390,0 chrXV 606232 . G A 3279.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8811;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.11;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3279,357,0 chrXV 606404 . A T 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=139;Dels=0.02;FS=0.000;HaplotypeScore=13.7004;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=-1.116;QD=22.91;ReadPosRankSum=1.706;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3217,342,0 chrXV 606572 . A G 4218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=180;Dels=0.00;FS=4.228;HaplotypeScore=18.0663;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.270;QD=23.43;ReadPosRankSum=1.713;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4218,468,0 chrXV 606625 . C T 3978.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.40;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3978,426,0 chrXV 606849 . G T 3392.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.07;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3392,369,0 chrXV 606886 . C T 3304.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.6021;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.94;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3304,351,0 chrXV 606945 . T C 2894 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=20.38;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2927,321,0 chrXV 606968 . T C 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.072;HaplotypeScore=3.5767;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=-0.439;QD=18.30;ReadPosRankSum=1.708;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2632,291,0 chrXV 606969 . G A 2691 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.7180;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=18.82;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2724,291,0 chrXV 607357 . G A 2268 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.3886;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2301,252,0 chrXV 608199 . C T 3339.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.2060;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.87;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3339,369,0 chrXV 608418 . A G 2708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;DP=115;Dels=0.00;FS=5.486;HaplotypeScore=10.2593;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=1.221;QD=23.55;ReadPosRankSum=2.850;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:3,111:115:99:2741,300,0 chrXV 608505 . T C 2208 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.03;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2241,240,0 chrXV 608673 . A G 2016 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=18.33;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2049,228,0 chrXV 608682 . T C 2031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=-0.399;QD=17.82;ReadPosRankSum=2.407;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2064,234,0 chrXV 608850 . T C 3027 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.93;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3060,333,0 chrXV 608958 . A G 2657 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.78;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2690,303,0 chrXV 609135 . C T 1177 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.04;FS=0.000;HaplotypeScore=14.2580;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=11.00;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1210,132,0 chrXV 609344 . G T 4189.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=21.37;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4189,453,0 chrXV 609454 . T C 4072.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=3.410;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=0.799;QD=22.37;ReadPosRankSum=1.428;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4072,453,0 chrXV 609542 . C G 4281.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=22.18;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:4281,465,0 chrXV 609550 . G A 4382.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=22.59;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4382,466,0 chrXV 609743 . A G 3310.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.211;QD=24.89;ReadPosRankSum=1.706;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3310,360,0 chrXV 609836 . T C 4411.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.35;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4411,486,0 chrXV 610300 . T C 4182.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.6386;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.98;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4182,474,0 chrXV 610420 . C A 4567.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.82;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4567,484,0 chrXV 610549 . G A 2903 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=21.83;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2936,309,0 chrXV 610554 . C G 2759 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.22;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2792,306,0 chrXV 610660 . G A 2395 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.59;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2428,267,0 chrXV 610864 . A G 2149 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.49;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2182,243,0 chrXV 610882 . A C 2218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=107;Dels=0.00;FS=11.757;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=0.085;QD=20.73;ReadPosRankSum=2.934;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:3,104:107:99:2251,246,0 chrXV 610939 . T C 2684 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.14;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2717,294,0 chrXV 611053 . T A 2700 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.32;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2733,297,0 chrXV 611138 . T C 3283.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.14;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3283,360,0 chrXV 611332 . G A 4298.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.2030;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.99;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4298,453,0 chrXV 612004 . G A 5893.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=14.4914;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.35;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,238:242:99:5893,640,0 chrXV 612123 . G A 4213.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.9216;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.61;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4213,450,0 chrXV 612133 . G A 4363.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.82;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4363,471,0 chrXV 612466 . A G 2200 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2233,249,0 chrXV 612840 . G A 1960 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1993,219,0 chrXV 614209 . T C 4329.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.571;QD=23.15;ReadPosRankSum=1.713;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4329,471,0 chrXV 614674 . A G 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;DP=194;Dels=0.00;FS=5.606;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.021;QD=20.72;ReadPosRankSum=2.860;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:3,191:194:99:4020,444,0 chrXV 614917 . A C 5798.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=12.7087;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=23.86;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5798,648,0 chrXV 614998 . C T 3938.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5518;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.50;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3938,429,0 chrXV 615019 . C T 4322.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=23.88;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4322,460,0 chrXV 615172 . G A 5334.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=2.3604;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=22.41;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5334,571,0 chrXV 615175 . A G 4799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=0.198;QD=21.05;ReadPosRankSum=1.717;SB=-2.277e+03 GT:AD:DP:GQ:PL 1/1:1,227:228:99:4799,546,0 chrXV 615199 . G A 4030.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.6318;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.55;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4030,432,0 chrXV 615511 . C T 3661.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3661,396,0 chrXV 615643 . A G 3687.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.75;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3687,408,0 chrXV 616566 . C A 3704.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.21;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3704,390,0 chrXV 616666 . T A 2751 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.49;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2784,300,0 chrXV 616818 . A T 2812 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.43;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2845,303,0 chrXV 616830 . T C 2643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5134;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-0.177;QD=20.65;ReadPosRankSum=1.678;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2676,291,0 chrXV 617095 . G A 3643.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=25.48;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3643,382,0 chrXV 617162 . T C 2930 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.2001;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.63;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2963,330,0 chrXV 617196 . T C 2742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=3.757;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.216;QD=24.05;ReadPosRankSum=1.671;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2775,303,0 chrXV 617892 . A G 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.626;DP=117;Dels=0.00;FS=9.376;HaplotypeScore=11.9244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.261;QD=22.56;ReadPosRankSum=2.922;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:3,113:117:99:2673,294,0 chrXV 618586 . A G 4449.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.14;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4449,489,0 chrXV 618618 . G T 4304.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.3941;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.89;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4304,471,0 chrXV 618771 . T C 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.591;DP=162;Dels=0.01;FS=7.517;HaplotypeScore=18.1674;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=2.129;QD=21.01;ReadPosRankSum=3.494;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:5,156:161:99:3403,372,0 chrXV 618889 . G A 4721.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.70;SB=-2.591e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4721,502,0 chrXV 619031 . C G 6969.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.31;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,296:299:99:6969,792,0 chrXV 619399 . G C 4872.01 PASS AC=2;AF=1.00;AN=2;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=11.3480;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=18.88;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,258:258:99:4872,564,0 chrXV 619416 . G A 5515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=5.8576;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-0.075;QD=19.91;ReadPosRankSum=0.778;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:1,275:277:99:5515,597,0 chrXV 619647 . T C 3021 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.2737;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.21;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3054,336,0 chrXV 620403 . G A 3444.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=25.32;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3444,375,0 chrXV 620433 . C T 3287.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.35;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3287,351,0 chrXV 620745 . T C 4902.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4902,546,0 chrXV 620813 . G C 5144.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=12.7461;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:0,238:242:99:5144,558,0 chrXV 621193 . G A 4383.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.90;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4383,460,0 chrXV 621403 . T C 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.746;DP=172;Dels=0.00;FS=11.484;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.166;QD=21.77;ReadPosRankSum=2.959;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:3,167:172:99:3744,408,0 chrXV 621555 . G A 3100 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3133,345,0 chrXV 622917 . C T 3723.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.8855;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.87;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3723,405,0 chrXV 623326 . A G 3490.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.7250;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.95;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3490,381,0 chrXV 623604 . C T 3311.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.4539;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.65;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3311,351,0 chrXV 623796 . G A 4904.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.69;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4904,525,0 chrXV 623880 . A T 5459.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.16;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5459,586,0 chrXV 623931 . A T 5784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=247;Dels=0.00;FS=3.575;HaplotypeScore=12.0482;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.859;QD=23.42;ReadPosRankSum=1.662;SB=-2.817e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:5784,633,0 chrXV 624091 . G A 5148.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.2895;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.81;SB=-2.586e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5148,547,0 chrXV 624279 . C T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.09;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3589,384,0 chrXV 624491 . T A 1776 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.89;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1809,195,0 chrXV 624522 . G A 1403 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=17.99;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1436,156,0 chrXV 624532 . G A 1399 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.70;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1432,153,0 chrXV 624582 . C T 1524 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.59;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1557,162,0 chrXV 624626 . T A 2072 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2105,231,0 chrXV 624831 . C A 3574.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.48;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3574,402,0 chrXV 624863 . T G 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.624;QD=24.17;ReadPosRankSum=1.591;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3577,387,0 chrXV 625104 . C G 2640 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.46;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2673,297,0 chrXV 625559 . A C 3131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=0.308;QD=21.16;ReadPosRankSum=1.661;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3164,351,0 chrXV 625581 . A G 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.142;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;MQRankSum=-0.957;QD=21.11;ReadPosRankSum=1.706;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2862,312,0 chrXV 625595 . A G 2096 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.9852;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=18.39;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2129,234,0 chrXV 625596 . C T 2146 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.9852;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=18.82;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2179,234,0 chrXV 625649 . C T 2315 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.44;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2348,252,0 chrXV 626602 . C T 2882 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=24.22;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2915,312,0 chrXV 626754 . T A 2426 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.86;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2459,264,0 chrXV 626916 . G A 3550.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.6849;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.90;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3550,396,0 chrXV 626943 . C T 3156 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2285;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.38;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3189,348,0 chrXV 627315 . C T 4598.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.70;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4598,498,0 chrXV 628552 . C T 3369.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8543;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.74;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3369,366,0 chrXV 628572 . C A 3799.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.83;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3799,408,0 chrXV 628846 . A G 4118.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.67;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4118,453,0 chrXV 628888 . T C 4170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.590;QD=22.91;ReadPosRankSum=1.713;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4170,465,0 chrXV 628909 . A G 3829.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.39;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3829,417,0 chrXV 629011 . C T 5150.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.4637;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=23.20;SB=-2.723e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5150,555,0 chrXV 629470 . G A 3383.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.3424;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.40;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3383,354,0 chrXV 630842 . A C 2366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=102;Dels=0.00;FS=3.096;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.189;QD=23.20;ReadPosRankSum=1.664;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2399,270,0 chrXV 631380 . A T 5935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.573;QD=23.09;ReadPosRankSum=1.705;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:1,256:257:99:5935,634,0 chrXV 631847 . G A 2817 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.18;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2850,306,0 chrXV 631954 . T C 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.667;QD=23.81;ReadPosRankSum=1.667;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2581,285,0 chrXV 632091 . C T 2752 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.2338;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.13;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2785,294,0 chrXV 632289 . G A 2862 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=15.5264;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2895,312,0 chrXV 632397 . C T 3577.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.5702;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.53;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3577,381,0 chrXV 632423 . C T 3671.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.09;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3671,387,0 chrXV 633069 . C T 2492 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.96;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2525,270,0 chrXV 633271 . C A 4404.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=3.4383;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.36;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4404,477,0 chrXV 633283 . C T 4212.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.71;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4212,450,0 chrXV 633831 . C T 3106 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.5133;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.84;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3139,330,0 chrXV 633844 . C A 2847 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.07;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2880,306,0 chrXV 633979 . A G 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=3.411;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.095;QD=22.83;ReadPosRankSum=1.630;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3161,348,0 chrXV 634307 . T C 3108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.750;QD=24.47;ReadPosRankSum=1.705;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3141,339,0 chrXV 634609 . C T 3453.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.57;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3453,378,0 chrXV 634982 . A G 2144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=95;Dels=0.00;FS=2.712;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-1.361;QD=22.57;ReadPosRankSum=2.398;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2177,240,0 chrXV 635161 . C T 2372 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.59;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2405,264,0 chrXV 635238 . A G 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=4.936;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-0.517;QD=19.96;ReadPosRankSum=1.655;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2707,300,0 chrXV 635241 . C T 2646 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.60;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2679,288,0 chrXV 635837 . C A 2810 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.48;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2843,312,0 chrXV 635862 . C T 2904 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.34;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2937,318,0 chrXV 636267 . C T 5669.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.8738;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.97;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:5669,601,0 chrXV 636434 . G A 6276.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=15.0337;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=25.10;SB=-3.148e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:6276,670,0 chrXV 637862 . C T 4447.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.18;SB=-2.281e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4447,486,0 chrXV 637866 . T C 4208.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=6.4353;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=19.39;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4208,474,0 chrXV 638040 . A G 4990.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=15.2845;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.54;SB=-2.836e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:4990,570,0 chrXV 638069 . C T 5673.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=12.0515;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.78;SB=-3.403e+03 GT:AD:DP:GQ:PL 1/1:0,272:273:99:5673,598,0 chrXV 638136 . T C 5751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=16.5505;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-0.261;QD=22.12;ReadPosRankSum=1.705;SB=-3.125e+03 GT:AD:DP:GQ:PL 1/1:1,258:260:99:5751,639,0 chrXV 638877 . T G 3742.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=181;Dels=0.00;FS=11.509;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.201;QD=20.67;ReadPosRankSum=2.939;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:3,177:181:99:3742,414,0 chrXV 639079 . G A 3986.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=21.09;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:3986,441,0 chrXV 639210 . T G 5241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=248;Dels=0.00;FS=3.531;HaplotypeScore=13.0499;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=0.237;QD=21.13;ReadPosRankSum=1.704;SB=-2.961e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:5241,573,0 chrXV 639226 . A G 4248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=0.809;QD=19.85;ReadPosRankSum=1.716;SB=-2.409e+03 GT:AD:DP:GQ:PL 1/1:1,213:214:99:4248,471,0 chrXV 639299 . T C 3518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=200;Dels=0.00;FS=5.474;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=34.76;MQ0=0;MQRankSum=1.696;QD=17.59;ReadPosRankSum=1.714;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:1,194:200:99:3518,381,0 chrXV 639307 . T C 3742.01 SnpCluster AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.04;MQ0=0;QD=18.80;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3742,405,0 chrXV 639313 . G T 3813.01 SnpCluster AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.22;MQ0=0;QD=19.26;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3813,399,0 chrXV 639316 . T A 3816.01 SnpCluster AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.88;MQ0=0;QD=19.27;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3816,405,0 chrXV 639334 . G A 3638.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.32;MQ0=0;QD=19.35;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3638,393,0 chrXV 639365 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;QD=19.38;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2863,315,0 chrXV 639455 . G T 3093 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=14.2317;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=22.09;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3126,339,0 chrXV 639529 . A G 2170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=5.315;HaplotypeScore=6.3723;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=0.393;QD=18.08;ReadPosRankSum=1.703;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2203,249,0 chrXV 639556 . A G 2117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=5.513;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;MQRankSum=0.701;QD=17.35;ReadPosRankSum=1.703;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2150,243,0 chrXV 639581 . G A 2073 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.02;FS=0.000;HaplotypeScore=26.5027;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=16.72;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2106,225,0 chrXV 639646 . A T 3064 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=21.43;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3097,330,0 chrXV 639658 . G A 3174 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=20.61;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3207,339,0 chrXV 639663 . T A 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.3521;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=-1.347;QD=20.08;ReadPosRankSum=1.687;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3105,333,0 chrXV 639717 . A G 3471.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.07;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3471,396,0 chrXV 639978 . A G 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=164;Dels=0.00;FS=6.605;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=2.086;QD=23.35;ReadPosRankSum=2.389;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:2,160:164:99:3829,414,0 chrXV 640127 . C T 3595.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3595,393,0 chrXV 640163 . T G 3372.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.3748;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:3372,366,0 chrXV 640217 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.9234;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3612,396,0 chrXV 640481 . A G 2801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=120;Dels=0.00;FS=10.708;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.026;QD=23.34;ReadPosRankSum=2.854;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:3,114:120:99:2834,306,0 chrXV 641107 . C T 2384 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.73;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2417,261,0 chrXV 641108 . C A 2306 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=20.41;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2339,258,0 chrXV 641196 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=25.16;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3228,339,0 chrXV 641229 . G A 2883 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=25.07;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2916,309,0 chrXV 641351 . A G 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=179;Dels=0.00;FS=3.313;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;MQRankSum=0.973;QD=22.04;ReadPosRankSum=1.713;SB=-2.114e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3945,435,0 chrXV 641453 . T C 4259.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=0.861;QD=23.27;ReadPosRankSum=1.713;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4259,468,0 chrXV 641468 . A G 4040.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=21.84;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4040,441,0 chrXV 641471 . T C 3785.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=21.26;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3785,414,0 chrXV 641537 . T C 2036 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=14.65;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2069,228,0 chrXV 641538 . T A 2140 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.48;MQ0=0;QD=15.51;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2173,228,0 chrXV 641541 . G C 2100 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=0;QD=14.29;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2133,228,0 chrXV 641550 . C T 2230 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;QD=14.39;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2263,240,0 chrXV 641551 . T C 2088 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=158;Dels=0.00;FS=11.490;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=37.65;MQ0=0;MQRankSum=-2.153;QD=13.22;ReadPosRankSum=2.956;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:2121,240,0 chrXV 641585 . C G 3301.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=18.97;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3301,360,0 chrXV 641755 . T A 3941.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=24.94;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3941,420,0 chrXV 642038 . C T 3613.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.88;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3613,405,0 chrXV 642126 . T C 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=155;Dels=0.00;FS=8.323;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.008;QD=21.74;ReadPosRankSum=2.385;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:2,151:155:99:3370,366,0 chrXV 642138 . T C 2956 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.53;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2989,330,0 chrXV 642164 . A G 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.228;DP=144;Dels=0.00;FS=8.038;HaplotypeScore=7.1792;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.650;QD=19.58;ReadPosRankSum=3.398;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:4,140:144:99:2853,312,0 chrXV 642193 . G T 3210.99 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.6693;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=19.82;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3244,348,0 chrXV 642279 . G A 3188 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.44;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3221,357,0 chrXV 642294 . G T 2950 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=136.9747;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.21;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2983,327,0 chrXV 642380 . G A 4623.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.01;FS=0.000;HaplotypeScore=25.1780;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=24.20;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4623,510,0 chrXV 642471 . A G 4896.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=12.6964;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=24.73;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4896,537,0 chrXV 642646 . G A 5705.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=13.1190;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.82;SB=-3.155e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5705,607,0 chrXV 642666 . A T 4777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=249;Dels=0.00;FS=6.620;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=-0.262;QD=19.18;ReadPosRankSum=2.400;SB=-2.902e+03 GT:AD:DP:GQ:PL 1/1:2,247:249:99:4777,528,0 chrXV 642679 . T C 4909.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=260;Dels=0.00;FS=3.014;HaplotypeScore=11.7329;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=0.977;QD=18.88;ReadPosRankSum=2.421;SB=-3.143e+03 GT:AD:DP:GQ:PL 1/1:2,258:260:99:4909,543,0 chrXV 643110 . G C 2936 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.57;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:2969,321,0 chrXV 643115 . G A 2920 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.21;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2953,324,0 chrXV 643206 . C T 2943 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.54;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:2976,315,0 chrXV 643346 . C T 2829 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.10;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2862,312,0 chrXV 643541 . C T 2177 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2210,243,0 chrXV 643604 . G A 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.227;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.335;QD=23.62;ReadPosRankSum=1.263;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2324,249,0 chrXV 643871 . C T 3601.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.85;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3601,387,0 chrXV 643999 . A G 3473.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.8402;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.41;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3473,381,0 chrXV 644337 . T C 3452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=154;Dels=0.00;FS=6.587;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.343;QD=22.42;ReadPosRankSum=2.417;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:2,149:154:99:3452,384,0 chrXV 644421 . T C 3990.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.778;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.7299;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-2.057;QD=20.46;ReadPosRankSum=2.943;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:3,192:195:99:3990,444,0 chrXV 644459 . C G 4007.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.14;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4007,438,0 chrXV 644486 . T C 4417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=198;Dels=0.00;FS=2.925;HaplotypeScore=12.3252;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.767;QD=22.31;ReadPosRankSum=2.375;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:2,195:198:99:4417,495,0 chrXV 644548 . G A 5104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=215;Dels=0.00;FS=4.574;HaplotypeScore=7.5385;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=1.233;QD=23.74;ReadPosRankSum=1.426;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:5104,534,0 chrXV 644569 . G A 5033.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.77;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5033,532,0 chrXV 644578 . C T 4730.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.3284;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.40;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4730,493,0 chrXV 644937 . A G 3338.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.55;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3338,369,0 chrXV 645045 . C T 3958.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.43;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3958,417,0 chrXV 645075 . C T 3846.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.19;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3846,414,0 chrXV 645240 . T C 4023.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=173;Dels=0.00;FS=3.030;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.878;QD=23.25;ReadPosRankSum=2.378;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:4023,441,0 chrXV 645294 . G A 4378.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.88;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4378,460,0 chrXV 645456 . G T 2873 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.44;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2906,309,0 chrXV 645468 . T C 2751 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7287;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.68;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2784,306,0 chrXV 645552 . G A 3516.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3516,390,0 chrXV 645801 . G A 2853 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2886,312,0 chrXV 645971 . A G 2728 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.55;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2761,306,0 chrXV 646271 . G A 3109 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.44;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3142,336,0 chrXV 646281 . T A 3055 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.64;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3088,336,0 chrXV 646548 . C T 4635.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.7401;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.39;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4635,504,0 chrXV 646794 . T C 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=6.173;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.227;QD=21.92;ReadPosRankSum=1.684;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3211,363,0 chrXV 646866 . T C 2113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=103;Dels=0.00;FS=5.462;HaplotypeScore=7.4576;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.121;QD=20.51;ReadPosRankSum=1.698;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2146,234,0 chrXV 647201 . G A 2522 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2555,276,0 chrXV 647253 . C T 3210.99 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.0932;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.33;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3244,348,0 chrXV 647541 . G A 3796.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3796,408,0 chrXV 647930 . A T 4219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=1.099;QD=23.70;ReadPosRankSum=1.712;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4219,453,0 chrXV 648076 . G A 4008.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.27;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4008,429,0 chrXV 648168 . T G 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.0540;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-1.693;QD=22.32;ReadPosRankSum=1.712;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:3950,426,0 chrXV 648172 . T G 3673.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.6380;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.725;QD=21.11;ReadPosRankSum=1.672;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3673,402,0 chrXV 648204 . C T 3592.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.88;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3592,384,0 chrXV 648403 . C T 4333.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.81;SB=-2.417e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4333,459,0 chrXV 648663 . A G 3312.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3312,369,0 chrXV 648963 . A G 2405 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2438,270,0 chrXV 649028 . G A 2584 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.73;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2617,285,0 chrXV 649497 . A G 3531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=153;Dels=0.00;FS=4.357;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.478;QD=23.08;ReadPosRankSum=1.709;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,149:153:99:3531,402,0 chrXV 649752 . C T 3039 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3072,330,0 chrXV 649918 . T A 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.560;QD=20.85;ReadPosRankSum=1.707;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2889,327,0 chrXV 650047 . G A 3052 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.66;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3085,339,0 chrXV 650442 . A G 3178 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3211,351,0 chrXV 650943 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0701;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3536,390,0 chrXV 651450 . T C 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.299;QD=22.96;ReadPosRankSum=1.702;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2696,294,0 chrXV 651516 . C T 3084 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.54;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3117,339,0 chrXV 651690 . T C 2097 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2130,231,0 chrXV 651798 . G A 570 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.36;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:66:603,66,0 chrXV 651846 . T C 1165 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1198,132,0 chrXV 651993 . G A 1735 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.69;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1768,183,0 chrXV 652283 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.6713;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3572,393,0 chrXV 652418 . C T 3225.28 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3258,351,0 chrXV 652485 . C T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3532,375,0 chrXV 652895 . G A 4120.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.15;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4120,456,0 chrXV 652952 . A T 3847.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.2961;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.17;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3847,417,0 chrXV 653138 . T C 3661.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.19;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3661,405,0 chrXV 653186 . A T 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.155;QD=21.77;ReadPosRankSum=1.657;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3037,330,0 chrXV 653468 . C A 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=148;Dels=0.00;FS=3.478;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.025;QD=22.32;ReadPosRankSum=0.719;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3303,354,0 chrXV 653526 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.88;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3511,369,0 chrXV 653618 . C T 3872.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.88;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3872,411,0 chrXV 653625 . A G 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=3.371;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-0.627;QD=22.08;ReadPosRankSum=1.690;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:1,163:167:99:3687,399,0 chrXV 653896 . G A 4111.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.9281;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=24.04;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:4111,432,0 chrXV 653929 . G A 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-0.455;QD=21.80;ReadPosRankSum=0.300;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3945,408,0 chrXV 653945 . C T 4059.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.59;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4059,424,0 chrXV 653975 . A T 3977.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.73;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3977,423,0 chrXV 654118 . C T 4086.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.3549;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.70;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4086,444,0 chrXV 654233 . G A 4220.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.09;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4220,445,0 chrXV 654364 . A G 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=3.105;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.411;QD=21.96;ReadPosRankSum=1.682;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3085,336,0 chrXV 654602 . A G 3784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=4.461;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.855;QD=23.21;ReadPosRankSum=1.689;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3784,429,0 chrXV 655035 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=23.09;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3279,348,0 chrXV 655064 . T C 2910 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=19.93;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2943,327,0 chrXV 655070 . A G 2931 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=19.80;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2964,327,0 chrXV 655223 . A G 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.776;QD=23.39;ReadPosRankSum=1.680;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3191,351,0 chrXV 655286 . A G 2937 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=23.31;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2970,327,0 chrXV 655345 . C T 2255 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1473;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.89;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2288,252,0 chrXV 655364 . A G 2086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=96;Dels=0.00;FS=3.054;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.628;QD=21.73;ReadPosRankSum=2.373;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2119,231,0 chrXV 655516 . T C 2114 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.5273;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.75;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2147,237,0 chrXV 655560 . G A 2051 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.13;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2084,222,0 chrXV 655601 . C A 2008 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.08;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2041,219,0 chrXV 655671 . T C 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.332;QD=22.35;ReadPosRankSum=1.697;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,98:101:99:2290,255,0 chrXV 655817 . G A 3350.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3350,357,0 chrXV 656069 . T C 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=4.260;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.121;QD=24.14;ReadPosRankSum=1.681;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,135:138:99:3331,369,0 chrXV 656165 . T G 3066 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.93;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3099,345,0 chrXV 656264 . G C 3903.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=19.8525;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.51;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,161:166:99:3903,429,0 chrXV 656389 . C T 3040 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.1543;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.69;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3073,342,0 chrXV 656449 . C T 4188.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.01;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4188,444,0 chrXV 656534 . T C 4048.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=181;Dels=0.00;FS=4.130;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.201;QD=22.36;ReadPosRankSum=1.693;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,175:181:99:4048,441,0 chrXV 656567 . G A 3199 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.35;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3232,345,0 chrXV 656602 . G A 2874 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.1805;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.37;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2907,318,0 chrXV 656698 . C T 3028 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3618;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.74;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3061,336,0 chrXV 656887 . A G 3178 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=24.08;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3211,351,0 chrXV 657104 . A C 3385.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=22.57;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3385,387,0 chrXV 657157 . A G 2209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=138;Dels=0.01;FS=2.937;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=34.94;MQ0=0;MQRankSum=-1.958;QD=16.01;ReadPosRankSum=2.413;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2242,243,0 chrXV 657159 . A G 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=111.2013;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;MQRankSum=-1.422;QD=15.97;ReadPosRankSum=1.706;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2189,240,0 chrXV 657188 . C T 1736 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.08;MQ0=0;QD=12.31;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1769,195,0 chrXV 657190 . A G 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=141;Dels=0.00;FS=3.036;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.08;MQ0=0;MQRankSum=-1.299;QD=12.50;ReadPosRankSum=2.415;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:1796,195,0 chrXV 657201 . G A 1958 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=0;QD=12.24;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:1991,216,0 chrXV 657204 . C T 2045 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.65;MQ0=0;QD=12.55;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2078,219,0 chrXV 657216 . A G 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.9753;MLEAC=2;MLEAF=1.00;MQ=35.94;MQ0=0;MQRankSum=-0.270;QD=13.65;ReadPosRankSum=1.672;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:2395,270,0 chrXV 657269 . T A 3030 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.1227;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=18.04;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3063,321,0 chrXV 657472 . G A 4670.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=23.59;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4670,498,0 chrXV 657704 . C T 4760.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.79;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4760,508,0 chrXV 657752 . C T 4567.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=24.55;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4567,495,0 chrXV 657777 . G A 4079.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.7965;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.70;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4079,450,0 chrXV 658010 . C T 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=181;Dels=0.00;FS=3.583;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;MQRankSum=-1.362;QD=21.58;ReadPosRankSum=-1.207;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:1,179:181:99:3906,411,0 chrXV 658022 . A G 3462.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=187;Dels=0.00;FS=3.504;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;MQRankSum=-0.875;QD=18.51;ReadPosRankSum=1.676;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:1,185:187:99:3462,384,0 chrXV 658026 . G A 3349.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=18.50;SB=-2.287e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3349,357,0 chrXV 658040 . T C 2884 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=16.57;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2917,315,0 chrXV 658074 . G A 2912 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=17.98;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2945,312,0 chrXV 658097 . A G 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-1.417;QD=18.74;ReadPosRankSum=1.684;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2731,306,0 chrXV 658645 . A G 5621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=17.4349;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.384;QD=23.42;ReadPosRankSum=1.703;SB=-2.930e+03 GT:AD:DP:GQ:PL 1/1:1,238:240:99:5621,630,0 chrXV 658711 . G A 5154.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.01;SB=-2.753e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5154,547,0 chrXV 658744 . G A 4984.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=24.9253;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.45;SB=-2.509e+03 GT:AD:DP:GQ:PL 1/1:0,220:222:99:4984,549,0 chrXV 659532 . A T 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.179;DP=131;Dels=0.00;FS=2.877;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.107;QD=21.58;ReadPosRankSum=2.392;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2860,309,0 chrXV 660208 . A G 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=128;Dels=0.00;FS=3.038;HaplotypeScore=5.1252;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.358;QD=22.80;ReadPosRankSum=2.256;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2952,324,0 chrXV 660741 . A G 3431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=162;Dels=0.00;FS=2.995;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.176;QD=21.18;ReadPosRankSum=2.328;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3431,375,0 chrXV 660805 . G A 3569.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.64;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3569,378,0 chrXV 661048 . C T 4482.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.04;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4482,489,0 chrXV 661195 . C G 4515.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.52;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4515,492,0 chrXV 661243 . G A 5080.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=17.2941;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.20;SB=-2.745e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5080,544,0 chrXV 661968 . T C 1819 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.91;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1852,204,0 chrXV 662174 . T C 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=118;Dels=0.00;FS=2.583;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.557;QD=23.66;ReadPosRankSum=2.281;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2825,309,0 chrXV 662208 . C A 2657 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.72;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2690,300,0 chrXV 662272 . C A 4580.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.9340;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.49;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4580,492,0 chrXV 662584 . T C 3444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.125;DP=157;Dels=0.00;FS=15.022;HaplotypeScore=14.6830;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.407;QD=21.94;ReadPosRankSum=3.381;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:4,153:157:99:3444,378,0 chrXV 663214 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.87;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3269,348,0 chrXV 663664 . T C 2755 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.40;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2788,315,0 chrXV 663812 . C T 118.13 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=73.4489;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=1.28;SB=-7.681e+02 GT:AD:DP:GQ:PL 1/1:0,80:92:18:151,18,0 chrXV 663919 . C G 2786 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.7187;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=24.02;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2819,309,0 chrXV 664181 . G T 2305 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=21.95;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2338,249,0 chrXV 664183 . A C 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;MQRankSum=-0.621;QD=20.50;ReadPosRankSum=1.634;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2227,246,0 chrXV 664211 . C T 2442 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=21.42;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2475,276,0 chrXV 664318 . C T 2964 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=20.03;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2997,318,0 chrXV 664333 . C T 2236 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=0;QD=16.20;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2269,252,0 chrXV 664342 . T C 2084 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.27;MQ0=0;QD=14.78;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2117,228,0 chrXV 664345 . G A 2154 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.22;MQ0=0;QD=15.28;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2187,234,0 chrXV 664352 . A C 1979 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.89;MQ0=0;QD=13.11;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2012,228,0 chrXV 664387 . A G 1907 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.80;MQ0=0;QD=11.99;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:1940,213,0 chrXV 664421 . C G 1917 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=30.48;MQ0=0;QD=10.95;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:1950,216,0 chrXV 664431 . A C 1793 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=174;Dels=0.00;FS=10.894;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=0;MQRankSum=-2.323;QD=10.30;ReadPosRankSum=2.421;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:1826,204,0 chrXV 664437 . A G 1741 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=158;Dels=0.00;FS=10.597;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.01;MQ0=0;MQRankSum=-0.023;QD=11.02;ReadPosRankSum=2.418;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:1774,195,0 chrXV 664439 . A G 1743 SnpCluster AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;QD=11.17;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:1776,195,0 chrXV 664462 . T C 1667 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.5118;MLEAC=2;MLEAF=1.00;MQ=31.02;MQ0=0;QD=9.92;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:1700,189,0 chrXV 664466 . A G 1684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=4.958;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=31.31;MQ0=0;MQRankSum=-0.250;QD=10.14;ReadPosRankSum=1.711;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:1717,192,0 chrXV 664473 . T C 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=163;Dels=0.00;FS=2.627;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=0;MQRankSum=-2.254;QD=9.95;ReadPosRankSum=2.374;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:1655,183,0 chrXV 664505 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;QD=15.94;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:2568,273,0 chrXV 664734 . G A 3559.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=23.26;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3559,375,0 chrXV 664814 . T A 39.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.86;MQ0=2;MQRankSum=0.742;QD=4.44;ReadPosRankSum=-0.742;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:3,6:9:9:72,9,0 chrXV 665143 . T G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.63;MQ0=8;QD=1.98;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:6,3:11:6:53,6,0 chrXV 665429 . A G 2491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=118;Dels=0.00;FS=3.032;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.267;QD=21.11;ReadPosRankSum=2.407;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:2,113:118:99:2524,279,0 chrXV 665469 . T A 2436 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.18;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2469,267,0 chrXV 665654 . T G 2128 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.28;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2161,237,0 chrXV 666379 . A G 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=125;Dels=0.00;FS=7.459;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.089;QD=24.74;ReadPosRankSum=2.831;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:3,122:125:99:3125,342,0 chrXV 666508 . T G 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=1.665;QD=23.32;ReadPosRankSum=1.710;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:3685,417,0 chrXV 666730 . G A 4434.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.95;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4434,469,0 chrXV 666736 . C T 4222.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.01;SB=-2.645e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4222,450,0 chrXV 666884 . T C 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=3.832;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=1.015;QD=22.45;ReadPosRankSum=1.553;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3929,432,0 chrXV 666904 . C T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.53;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3942,420,0 chrXV 667477 . A T 1208 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=0.916;QD=18.30;ReadPosRankSum=2.375;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1241,141,0 chrXV 667488 . G A 1348 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=20.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1381,150,0 chrXV 667624 . C T 411 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.22;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:48:444,48,0 chrXV 667630 . C A 451 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=16.11;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:54:484,54,0 chrXV 667729 . G C 349 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=37.6938;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=15.17;SB=-7.063e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:42:382,42,0 chrXV 668097 . A T 3767.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=3.632;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.716;QD=24.95;ReadPosRankSum=1.663;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3767,405,0 chrXV 668418 . G A 3150 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.00;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3183,348,0 chrXV 668436 . C T 3138 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.35;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3171,348,0 chrXV 668552 . A G 3821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=3.914;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.934;QD=23.02;ReadPosRankSum=1.627;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3821,417,0 chrXV 668559 . G A 3781.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.6545;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=23.20;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3781,411,0 chrXV 668833 . C T 3083 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=20.42;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3116,324,0 chrXV 668837 . T C 3052 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;QD=19.82;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3085,336,0 chrXV 668880 . G A 741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=130;Dels=0.00;FS=23.934;HaplotypeScore=157.4711;MLEAC=2;MLEAF=1.00;MQ=43.01;MQ0=0;MQRankSum=7.205;QD=5.70;ReadPosRankSum=-9.340;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:75,55:130:84:774,84,0 chrXV 669239 . T C 3363.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.42;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3363,378,0 chrXV 669462 . A G 3870.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.97;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3870,420,0 chrXV 669657 . A G 3491.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.97;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3491,393,0 chrXV 669720 . G A 2719 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.11;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2752,297,0 chrXV 669828 . A G 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=150;Dels=0.00;FS=4.270;HaplotypeScore=14.1341;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-0.530;QD=21.39;ReadPosRankSum=1.685;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,146:150:99:3241,354,0 chrXV 669939 . G A 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.105;QD=23.43;ReadPosRankSum=1.077;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3009,315,0 chrXV 670002 . A G 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=165;Dels=0.00;FS=2.848;HaplotypeScore=19.8683;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.356;QD=22.27;ReadPosRankSum=2.328;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:2,160:165:99:3674,405,0 chrXV 670050 . G T 3463.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.12;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3463,375,0 chrXV 670051 . C A 3455.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.20;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3455,375,0 chrXV 670098 . T C 3039 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.26;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3072,339,0 chrXV 670150 . A G 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=127;Dels=0.00;FS=6.338;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.927;QD=20.22;ReadPosRankSum=2.294;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2601,285,0 chrXV 670200 . C T 2805 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0603;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.97;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2838,303,0 chrXV 670245 . T G 2855 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.13;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2888,324,0 chrXV 670328 . A G 2462 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=23.01;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2495,279,0 chrXV 670347 . C T 2715 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.44;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2748,291,0 chrXV 670396 . C T 2663 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.76;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2696,291,0 chrXV 670513 . C A 3076 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=24.61;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3109,342,0 chrXV 670632 . G A 2243 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=25.20;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2276,243,0 chrXV 670894 . A T 2828 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.17;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2861,309,0 chrXV 670961 . T A 2664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=9.8449;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.483;QD=21.48;ReadPosRankSum=1.647;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2697,294,0 chrXV 671252 . C T 4972.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=23.5945;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.80;SB=-2.974e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:4972,529,0 chrXV 671534 . A G 5771.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=11.0922;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.15;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:5771,633,0 chrXV 671587 . C T 5904.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.60;SB=-2.698e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5904,634,0 chrXV 671818 . A G 4724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.8857;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.262;QD=22.60;ReadPosRankSum=1.715;SB=-2.251e+03 GT:AD:DP:GQ:PL 1/1:1,204:209:99:4724,522,0 chrXV 671872 . G C 4275.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:4275,462,0 chrXV 672127 . C T 4430.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.56;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4430,469,0 chrXV 672196 . C A 3566.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4866;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.29;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3566,384,0 chrXV 672316 . A G 3737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.426;QD=20.88;ReadPosRankSum=1.692;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,174:179:99:3737,411,0 chrXV 672370 . T C 3445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=164;Dels=0.00;FS=4.242;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-0.406;QD=21.01;ReadPosRankSum=1.711;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:3445,375,0 chrXV 672392 . T C 3144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=150;Dels=0.00;FS=7.379;HaplotypeScore=4.3856;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.008;QD=20.96;ReadPosRankSum=1.691;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3177,326,0 chrXV 672400 . G A 2992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;DP=155;Dels=0.00;FS=3.651;HaplotypeScore=6.8514;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=1.030;QD=19.30;ReadPosRankSum=-0.147;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3025,314,0 chrXV 672638 . A G 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.345;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=1.251;QD=22.72;ReadPosRankSum=1.668;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2510,288,0 chrXV 672716 . G A 2160 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.23;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2193,231,0 chrXV 672740 . A C 2250 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.83;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2283,255,0 chrXV 673231 . C T 2216 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=17.59;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2249,240,0 chrXV 673264 . C G 2039 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=40.95;MQ0=0;QD=14.99;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2072,225,0 chrXV 673284 . T G 1905 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.14;MQ0=0;QD=14.11;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1938,213,0 chrXV 673289 . T G 1862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=132;Dels=0.00;FS=6.109;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=38.80;MQ0=0;MQRankSum=-2.122;QD=14.11;ReadPosRankSum=2.947;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:1895,204,0 chrXV 673296 . G A 2048 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=2.8662;MLEAC=2;MLEAF=1.00;MQ=40.80;MQ0=0;QD=15.75;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2081,225,0 chrXV 673312 . T C 1948 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.0255;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;QD=14.98;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:1981,225,0 chrXV 673509 . T C 3339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=156;Dels=0.00;FS=2.998;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=0.357;QD=21.40;ReadPosRankSum=2.418;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3339,363,0 chrXV 673605 . A G 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.105;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.458;QD=24.08;ReadPosRankSum=1.707;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3347,369,0 chrXV 673724 . C T 3822.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.59;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3822,417,0 chrXV 673977 . G A 1713 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.69;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1746,186,0 chrXV 673992 . G C 1704 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=19.36;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1737,186,0 chrXV 674074 . A G 2686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.012;QD=20.66;ReadPosRankSum=2.374;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2719,300,0 chrXV 674210 . T C 876 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=12.00;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:909,102,0 chrXV 674212 . T G 952 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.35;MQ0=0;QD=13.41;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:985,108,0 chrXV 674227 . A G 860 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.17;MQ0=0;QD=11.32;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:893,99,0 chrXV 674250 . G A 1253 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.18;MQ0=0;QD=14.74;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1286,135,0 chrXV 674300 . G A 1843 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=21.43;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1876,204,0 chrXV 674309 . G C 1845 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=79.0338;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=20.50;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1878,207,0 chrXV 674364 . G A 2000 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=21.28;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2033,216,0 chrXV 674952 . T C 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.146;DP=156;Dels=0.00;FS=8.529;HaplotypeScore=14.0762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.029;QD=19.95;ReadPosRankSum=2.418;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3145,348,0 chrXV 675212 . C A 2120 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2153,231,0 chrXV 675849 . T C 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=113;Dels=0.00;FS=2.660;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.011;QD=22.59;ReadPosRankSum=2.384;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2586,288,0 chrXV 675894 . C G 3188 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.71;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3221,345,0 chrXV 676460 . G A 3340.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.6998;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.20;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3340,369,0 chrXV 677022 . G A 4574.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=21.0943;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=16.75;SB=-3.015e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:4574,492,0 chrXV 677365 . C T 6081.01 PASS AC=2;AF=1.00;AN=2;DP=319;Dels=0.00;FS=0.000;HaplotypeScore=20.8191;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.06;SB=-3.377e+03 GT:AD:DP:GQ:PL 1/1:0,318:319:99:6081,649,0 chrXV 677499 . G C 4985.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=29.6389;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=18.00;SB=-3.014e+03 GT:AD:DP:GQ:PL 1/1:0,270:277:99:4985,546,0 chrXV 677846 . T A 3928.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3928,423,0 chrXV 678010 . G A 1812 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1845,195,0 chrXV 678100 . C G 2873 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.94;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2906,321,0 chrXV 679088 . A G 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=122;Dels=0.00;FS=3.027;HaplotypeScore=7.7865;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.030;QD=21.64;ReadPosRankSum=2.369;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2673,300,0 chrXV 679983 . C T 4612.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.15;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4612,492,0 chrXV 681204 . T A 1021 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1054,111,0 chrXV 681705 . G A 3689.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.4421;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3689,411,0 chrXV 682119 . T A 2296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=3.531;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;MQRankSum=0.223;QD=18.52;ReadPosRankSum=1.704;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2329,246,0 chrXV 682131 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=19.14;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2138,225,0 chrXV 682132 . G A 2052 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=18.49;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2085,222,0 chrXV 682173 . T A 2069 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7574;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=19.52;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2102,228,0 chrXV 682254 . G A 3517.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.94;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3517,372,0 chrXV 682293 . A C 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=131;Dels=0.00;FS=3.319;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.309;QD=22.40;ReadPosRankSum=1.706;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2967,330,0 chrXV 682563 . C A 3465.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.1479;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.79;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3465,375,0 chrXV 682629 . C A 4700.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.35;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4700,510,0 chrXV 682723 . T G 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=0.506;QD=18.85;ReadPosRankSum=1.608;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:3675,408,0 chrXV 682752 . T A 3525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=5.5546;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=-1.170;QD=19.05;ReadPosRankSum=1.526;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3525,375,0 chrXV 682813 . G C 3670.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=20.50;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3670,399,0 chrXV 682818 . C A 3469.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=18.96;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3469,378,0 chrXV 682876 . T C 5124.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.66;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5124,564,0 chrXV 682961 . C T 3336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.946;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.2386;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=1.073;QD=19.98;ReadPosRankSum=-0.244;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3336,352,0 chrXV 682981 . G T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.6475;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=23.29;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3796,397,0 chrXV 683031 . A G 4292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=192;Dels=0.00;FS=4.320;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-1.570;QD=22.35;ReadPosRankSum=1.714;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4292,468,0 chrXV 683302 . G A 5572.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=12.5919;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.22;SB=-3.247e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5572,600,0 chrXV 683351 . T C 5128.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=220;Dels=0.00;FS=3.030;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.115;QD=23.31;ReadPosRankSum=1.700;SB=-2.847e+03 GT:AD:DP:GQ:PL 1/1:1,218:220:99:5128,567,0 chrXV 683698 . A C 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=3.543;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.366;QD=25.35;ReadPosRankSum=1.699;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2695,300,0 chrXV 683731 . C T 2458 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.97;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2491,267,0 chrXV 683751 . G T 2424 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.65;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2457,273,0 chrXV 683778 . T C 1919 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.56;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1952,210,0 chrXV 683862 . T C 2154 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.54;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2187,237,0 chrXV 684557 . C T 5194.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.88;SB=-2.540e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5194,567,0 chrXV 684893 . C T 3533.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.78;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3533,393,0 chrXV 684920 . T C 3935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=175;Dels=0.00;FS=5.985;HaplotypeScore=9.4372;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-1.087;QD=22.49;ReadPosRankSum=2.902;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:3,171:175:99:3935,435,0 chrXV 686417 . T C 1992 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2025,225,0 chrXV 686872 . G T 2889 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.49;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2922,321,0 chrXV 686985 . G A 1921 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1954,210,0 chrXV 687959 . C T 3323.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.45;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3323,351,0 chrXV 688433 . T A 4514.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=14.3864;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=20.52;SB=-2.651e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4514,481,0 chrXV 688719 . T C 5513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=292;Dels=0.00;FS=9.121;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.955;QD=18.88;ReadPosRankSum=2.914;SB=-3.589e+03 GT:AD:DP:GQ:PL 1/1:3,288:292:99:5513,606,0 chrXV 689641 . T C 4550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=17.1325;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.174;QD=21.98;ReadPosRankSum=1.681;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:1,204:207:99:4550,513,0 chrXV 689920 . G A 4236.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.80;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4236,451,0 chrXV 690011 . C T 3917.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.64;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3917,429,0 chrXV 690980 . G C 3197 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3230,354,0 chrXV 691977 . T A 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=4.543;HaplotypeScore=10.5829;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.889;QD=21.45;ReadPosRankSum=1.638;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2435,264,0 chrXV 692038 . T C 2728 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.7332;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.73;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2761,306,0 chrXV 692169 . A C 2929 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2962,330,0 chrXV 692736 . T G 4331.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.44;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,189:193:99:4331,489,0 chrXV 692772 . C G 3668.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.49;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3668,402,0 chrXV 692773 . A T 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.757;QD=20.92;ReadPosRankSum=1.712;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:1,173:178:99:3723,402,0 chrXV 693145 . A C 5168.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=221;Dels=0.00;FS=3.814;HaplotypeScore=17.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.894;QD=23.38;ReadPosRankSum=1.685;SB=-2.414e+03 GT:AD:DP:GQ:PL 1/1:1,218:221:99:5168,567,0 chrXV 693266 . G A 4073.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.5057;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.41;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4073,433,0 chrXV 693526 . C T 3716.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.29;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3716,408,0 chrXV 693989 . A G 4162.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4162,456,0 chrXV 694061 . G A 2740 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.68;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2773,297,0 chrXV 694133 . C T 2728 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.93;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2761,303,0 chrXV 694231 . C T 2718 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.23;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2751,294,0 chrXV 694271 . G A 3044 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7567;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.55;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3077,324,0 chrXV 694301 . G C 2705 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.73;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2738,303,0 chrXV 694394 . G A 3099 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=24.79;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3132,330,0 chrXV 694427 . C G 2690 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.61;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2723,297,0 chrXV 694439 . G A 2744 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=23.25;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2777,294,0 chrXV 694471 . T C 2473 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.50;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2506,276,0 chrXV 694591 . G A 3342.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.37;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3342,354,0 chrXV 694619 . A G 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.745;DP=132;Dels=0.00;FS=6.120;HaplotypeScore=11.4179;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.411;QD=21.42;ReadPosRankSum=2.946;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:3,127:132:99:2860,312,0 chrXV 695116 . T C 4431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.1716;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.426;QD=25.18;ReadPosRankSum=1.692;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4431,483,0 chrXV 695354 . C A 2962 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.61;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2995,321,0 chrXV 695790 . T C 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.6053;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.676;QD=22.93;ReadPosRankSum=-0.112;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2876,312,0 chrXV 696147 . G A 2692 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2725,291,0 chrXV 696251 . G C 2971 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0615;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,125:129:99:3004,336,0 chrXV 696320 . G T 2777 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.22;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2810,312,0 chrXV 696404 . C T 3879.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.24;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3879,417,0 chrXV 696614 . C T 4455.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.9864;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.70;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4455,469,0 chrXV 696857 . C T 2657 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2690,294,0 chrXV 697062 . T C 3172 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3205,348,0 chrXV 697466 . C T 3612.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.58;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3612,396,0 chrXV 697544 . T C 2563 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.84;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2596,282,0 chrXV 697548 . A G 2491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=116;Dels=0.00;FS=3.048;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=1.039;QD=21.47;ReadPosRankSum=1.702;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2524,273,0 chrXV 697884 . G C 2812 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.94;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2845,318,0 chrXV 697906 . G A 3124 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.7152;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.69;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3157,330,0 chrXV 698025 . T C 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.621;QD=22.35;ReadPosRankSum=1.706;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2961,330,0 chrXV 698042 . G C 2948 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=21.52;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2981,330,0 chrXV 698112 . A T 2690 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=22.61;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2723,291,0 chrXV 698124 . G A 2409 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.4827;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.13;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2442,267,0 chrXV 698272 . A C 3059 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.01;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3092,339,0 chrXV 698306 . T C 1682 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=14.63;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1715,198,0 chrXV 698579 . T G 3385.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4620;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.27;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3385,381,0 chrXV 698616 . A G 3393.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=3.259;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.529;QD=23.56;ReadPosRankSum=1.708;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3393,372,0 chrXV 699271 . G A 4054.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.90;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:4054,427,0 chrXV 699308 . G A 4444.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=23.03;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4444,486,0 chrXV 699320 . A G 4500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=191;Dels=0.00;FS=7.119;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=1.622;QD=23.56;ReadPosRankSum=2.398;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:4500,498,0 chrXV 699602 . A G 3644.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=15.5840;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.92;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3644,405,0 chrXV 699718 . G A 3761.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.6600;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.36;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3761,402,0 chrXV 700142 . C G 4303.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=15.4802;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.65;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:4303,480,0 chrXV 700484 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=24.45;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2967,318,0 chrXV 700514 . A G 2610 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=23.73;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2643,291,0 chrXV 700551 . C T 2274 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=23.44;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2307,243,0 chrXV 700856 . A G 3965.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.33;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3965,435,0 chrXV 700968 . G A 5419.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=6.6933;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=24.63;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5419,603,0 chrXV 701208 . C T 4571.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.2869;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=21.26;SB=-2.614e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4571,486,0 chrXV 701218 . C A 4293.01 SnpCluster AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=21.79;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4293,459,0 chrXV 701219 . C T 4311.01 SnpCluster AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=21.56;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4311,459,0 chrXV 701225 . G A 4273.01 SnpCluster AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=20.25;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4273,451,0 chrXV 701365 . T A 4983.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.6291;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.25;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4983,535,0 chrXV 701397 . C T 4805.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.6102;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.45;SB=-2.718e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4805,514,0 chrXV 701450 . A G 5046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.6422;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.090;QD=21.56;ReadPosRankSum=1.702;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:1,231:234:99:5046,564,0 chrXV 701541 . C T 5560.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=18.3404;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.88;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,242:243:99:5560,597,0 chrXV 701704 . G A 3873.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.38;MQ0=0;QD=23.19;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3873,423,0 chrXV 701852 . T C 3100 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=12.1791;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;QD=22.79;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3133,348,0 chrXV 702177 . C T 4067.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.5581;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.35;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4067,430,0 chrXV 702280 . A T 3646.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.0821;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.37;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3646,396,0 chrXV 702475 . T C 3595.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=146;Dels=0.00;FS=2.636;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.076;QD=24.62;ReadPosRankSum=2.416;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3595,396,0 chrXV 702498 . A C 3303.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.02;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3303,363,0 chrXV 702512 . A G 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=143;Dels=0.00;FS=10.497;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-1.461;QD=21.66;ReadPosRankSum=2.894;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:3130,339,0 chrXV 702546 . G T 2923 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=19.49;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2956,312,0 chrXV 702555 . G C 2740 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=18.90;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2773,306,0 chrXV 702600 . G A 3903.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.56;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3903,417,0 chrXV 702725 . C A 3442.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.0378;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.26;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3442,360,0 chrXV 702890 . A G 3192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=13.0679;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=1.344;QD=22.01;ReadPosRankSum=1.708;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,142:145:99:3225,366,0 chrXV 702970 . A G 3650.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.8249;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.25;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3650,405,0 chrXV 703091 . C T 3569.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=23.33;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3569,378,0 chrXV 703097 . G A 3459.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.89;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3459,363,0 chrXV 703124 . C G 2935 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.67;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2968,327,0 chrXV 703324 . A G 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=110;Dels=0.00;FS=2.979;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;MQRankSum=-2.047;QD=24.14;ReadPosRankSum=2.405;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2688,297,0 chrXV 703419 . A G 3071 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=23.44;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3104,342,0 chrXV 703443 . A G 2725 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=23.70;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2758,297,0 chrXV 703508 . A T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.573;DP=11;Dels=0.00;FS=3.332;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=0.248;QD=1.89;ReadPosRankSum=1.203;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:3,7:10:6:52,6,0 chrXV 703509 . C A 28.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=4.79;SB=-2.676e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:60,6,0 chrXV 703812 . T A 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.404;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.90;MQ0=11;MQRankSum=-0.370;QD=1.13;ReadPosRankSum=-2.219;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,3:23:56:56,0,159 chrXV 703851 . C A 109.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.813;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.90;MQ0=11;MQRankSum=1.378;QD=4.74;ReadPosRankSum=-2.426;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,6:23:73:139,0,73 chrXV 703954 . A T 76.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.520;DP=15;Dels=0.00;FS=25.185;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.12;MQ0=4;MQRankSum=2.520;QD=5.10;ReadPosRankSum=-1.398;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:10,5:15:12:109,12,0 chrXV 704035 . G A 139.13 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.71;MQ0=10;QD=6.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,16:20:18:172,18,0 chrXV 710029 . T C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.78;MQ0=0;QD=8.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:48,6,0 chrXV 710172 . C T 961 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.37;MQ0=0;QD=14.34;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:994,105,0 chrXV 710181 . G A 1120 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.22;MQ0=0;QD=16.23;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1153,123,0 chrXV 710182 . A T 1116 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;QD=15.72;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1149,123,0 chrXV 710305 . A G 1664 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.74;MQ0=0;QD=18.49;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1697,189,0 chrXV 710553 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=24.78;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2957,324,0 chrXV 710606 . T A 2881 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=23.05;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2914,309,0 chrXV 710609 . T C 2812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=3.375;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.391;QD=22.32;ReadPosRankSum=1.676;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2845,306,0 chrXV 710634 . G A 2820 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.36;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2853,300,0 chrXV 710699 . G A 2901 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2934,312,0 chrXV 711252 . A G 2101 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.61;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2134,234,0 chrXV 711322 . T C 2233 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.56;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2266,252,0 chrXV 711533 . G A 2738 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.6219;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.40;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2771,294,0 chrXV 711590 . A G 2642 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.3100;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.31;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2675,294,0 chrXV 711743 . C A 4649.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.72;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:4649,519,0 chrXV 712214 . C G 3061 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=14.3733;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.82;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3094,342,0 chrXV 712306 . C T 3772.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.1106;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3772,408,0 chrXV 712481 . T C 4274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.732;QD=23.36;ReadPosRankSum=1.694;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4274,471,0 chrXV 712690 . A G 3009 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.92;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3042,336,0 chrXV 712727 . C A 1449 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=17.6635;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.46;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1482,168,0 chrXV 712783 . T A 2548 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.38;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2581,273,0 chrXV 712794 . C T 2842 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.20;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2875,312,0 chrXV 712982 . G A 4146.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.69;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4146,438,0 chrXV 713054 . A G 5598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.227;DP=246;Dels=0.00;FS=8.599;HaplotypeScore=23.7556;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=1.796;QD=22.76;ReadPosRankSum=3.411;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:4,242:246:99:5598,621,0 chrXV 713325 . G A 2825 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.62;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2858,309,0 chrXV 713345 . A G 2513 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=19.79;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2546,285,0 chrXV 713393 . T C 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;DP=154;Dels=0.00;FS=5.965;HaplotypeScore=4.5283;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=0.013;QD=22.25;ReadPosRankSum=2.955;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3426,381,0 chrXV 713519 . T C 3915.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.78;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3915,435,0 chrXV 713612 . T C 4519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.361;QD=24.17;ReadPosRankSum=1.695;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4519,501,0 chrXV 713730 . G A 4044.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.36;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4044,424,0 chrXV 713757 . C G 3717.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.13;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3717,417,0 chrXV 713926 . T C 2433 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.32;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2466,276,0 chrXV 714100 . A G 2206 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.98;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2239,243,0 chrXV 714125 . C A 2336 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.46;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2369,255,0 chrXV 714243 . T C 2783 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.7162;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.41;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2816,309,0 chrXV 714304 . C T 2254 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.88;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2287,243,0 chrXV 714318 . C T 2113 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.32;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2146,228,0 chrXV 714391 . G C 2663 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.38;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2696,294,0 chrXV 714566 . A G 3135 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.39;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3168,348,0 chrXV 714582 . T A 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=145;Dels=0.00;FS=2.987;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=1.152;QD=23.10;ReadPosRankSum=2.381;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3349,366,0 chrXV 714919 . A G 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=112;Dels=0.00;FS=9.150;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.595;QD=24.04;ReadPosRankSum=2.937;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2726,297,0 chrXV 715193 . G A 1846 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3459;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.29;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1879,204,0 chrXV 715569 . C A 2445 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.04;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2478,276,0 chrXV 715572 . A T 2679 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=21.43;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2712,282,0 chrXV 715611 . C T 2441 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.6568;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.79;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2474,261,0 chrXV 715665 . G A 2714 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2747,285,0 chrXV 715815 . G A 3975.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.4132;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.98;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3975,429,0 chrXV 716103 . T C 4419.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4419,486,0 chrXV 716400 . C T 4128.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.17;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4128,453,0 chrXV 716815 . A G 3974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=184;Dels=0.00;FS=2.807;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.790;QD=21.60;ReadPosRankSum=2.369;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:2,180:184:99:3974,444,0 chrXV 716889 . T C 3988.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.364;DP=188;Dels=0.00;FS=4.546;HaplotypeScore=8.6698;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.461;QD=21.21;ReadPosRankSum=-0.848;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3988,425,0 chrXV 716951 . G C 4730.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=24.1136;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.74;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:0,200:207:99:4730,513,0 chrXV 717052 . C T 4702.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=24.49;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4702,504,0 chrXV 717277 . T C 5034.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=273;Dels=0.00;FS=7.137;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-0.232;QD=18.44;ReadPosRankSum=2.395;SB=-3.140e+03 GT:AD:DP:GQ:PL 1/1:2,269:273:99:5034,549,0 chrXV 717283 . C T 5099.01 PASS AC=2;AF=1.00;AN=2;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=18.89;SB=-3.103e+03 GT:AD:DP:GQ:PL 1/1:0,269:270:99:5099,544,0 chrXV 717397 . C T 5735.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.58;SB=-3.240e+03 GT:AD:DP:GQ:PL 1/1:0,252:254:99:5735,610,0 chrXV 717823 . T C 5724.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=20.0865;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.36;SB=-3.064e+03 GT:AD:DP:GQ:PL 1/1:0,267:268:99:5724,627,0 chrXV 718015 . A T 5275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=20.3668;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.420;QD=23.55;ReadPosRankSum=1.716;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:1,223:224:99:5275,570,0 chrXV 718180 . T C 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.957;DP=208;Dels=0.00;FS=14.165;HaplotypeScore=17.7181;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=2.260;QD=22.03;ReadPosRankSum=4.132;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:6,199:208:99:4583,501,0 chrXV 718599 . G A 2076 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7469;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.18;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2109,222,0 chrXV 718650 . G C 1834 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=18.16;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,98:101:99:1867,210,0 chrXV 718752 . T C 3630.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.20;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3630,396,0 chrXV 720426 . G A 3418.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.2860;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.50;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3418,378,0 chrXV 720674 . T C 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=177;Dels=0.00;FS=7.460;HaplotypeScore=12.9195;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.645;QD=20.76;ReadPosRankSum=2.393;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:2,172:177:99:3675,408,0 chrXV 720712 . C A 4551.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=16.8075;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.31;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4551,484,0 chrXV 720799 . A G 3084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=137;Dels=0.00;FS=6.314;HaplotypeScore=14.7199;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.389;QD=22.51;ReadPosRankSum=2.359;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:3117,342,0 chrXV 721121 . C T 5719.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.23;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5719,607,0 chrXV 721230 . A G 3777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.4203;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-0.898;QD=19.67;ReadPosRankSum=1.678;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:3777,417,0 chrXV 721240 . A T 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.198;DP=200;Dels=0.00;FS=9.068;HaplotypeScore=12.0085;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-1.566;QD=19.13;ReadPosRankSum=3.059;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:4,196:200:99:3825,408,0 chrXV 721370 . A C 4093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=191;Dels=0.00;FS=5.337;HaplotypeScore=11.1013;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.718;QD=21.43;ReadPosRankSum=2.888;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:3,186:191:99:4093,462,0 chrXV 721661 . A C 4088.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.48;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:4088,459,0 chrXV 721768 . C A 1791 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=17.39;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1824,198,0 chrXV 721815 . C T 1413 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=11.77;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1446,153,0 chrXV 721920 . A G 3809.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=153;Dels=0.00;FS=10.896;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=-2.369;QD=24.90;ReadPosRankSum=2.385;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3809,417,0 chrXV 721957 . G A 4392.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=25.84;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4392,466,0 chrXV 722023 . T C 4309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-1.282;QD=23.81;ReadPosRankSum=2.395;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4309,465,0 chrXV 722033 . A C 4642.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=23.93;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4642,504,0 chrXV 722554 . C T 5007.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.5865;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.18;SB=-2.721e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5007,555,0 chrXV 722608 . G A 3974.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.1320;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.84;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3974,426,0 chrXV 722707 . C T 4291.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.5460;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=22.12;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4291,454,0 chrXV 722718 . A C 4116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=206;Dels=0.00;FS=2.707;HaplotypeScore=4.9912;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.711;QD=19.98;ReadPosRankSum=2.425;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:2,200:206:99:4116,456,0 chrXV 722724 . A G 4220.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.59;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4220,471,0 chrXV 723010 . A G 5330.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=8.2175;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.12;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5330,603,0 chrXV 723226 . A C 4833.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=26.4444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-2.292e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4833,534,0 chrXV 723552 . G A 3404.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.39;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3404,360,0 chrXV 723942 . T C 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=160;Dels=0.00;FS=6.105;HaplotypeScore=14.1612;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-2.164;QD=20.56;ReadPosRankSum=2.418;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:2,153:160:99:3290,357,0 chrXV 724746 . G A 2519 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=22.69;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2552,270,0 chrXV 724747 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=22.56;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2537,270,0 chrXV 724878 . T C 1157 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.37;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1190,132,0 chrXV 724989 . A G 1998 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.51;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2031,222,0 chrXV 725483 . C G 2401 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2434,276,0 chrXV 725534 . T A 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=137;Dels=0.00;FS=3.108;HaplotypeScore=8.4337;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=0.475;QD=21.54;ReadPosRankSum=1.681;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2984,324,0 chrXV 726404 . T C 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=123;Dels=0.00;FS=3.382;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.284;QD=23.24;ReadPosRankSum=1.647;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2891,327,0 chrXV 726499 . A G 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=121;Dels=0.00;FS=2.890;HaplotypeScore=7.7900;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-1.921;QD=20.99;ReadPosRankSum=2.389;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2573,279,0 chrXV 726524 . A G 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=3.022;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.640;QD=20.86;ReadPosRankSum=2.328;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2557,282,0 chrXV 726868 . C T 2730 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.33;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2763,300,0 chrXV 726893 . G A 2808 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.46;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2841,312,0 chrXV 726917 . A G 3388.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.44;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3388,372,0 chrXV 727008 . G A 3705.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.06;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3705,390,0 chrXV 727477 . A G 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=3.565;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.693;QD=25.03;ReadPosRankSum=1.628;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2536,279,0 chrXV 727817 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.54;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2354,249,0 chrXV 727823 . C G 2099 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=19.80;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2132,240,0 chrXV 727969 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.3250;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.56;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3316,354,0 chrXV 728063 . G A 2985 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=24.87;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3018,315,0 chrXV 728105 . A G 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=173;Dels=0.00;FS=4.030;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=0.806;QD=22.50;ReadPosRankSum=1.692;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3893,426,0 chrXV 728123 . T C 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.2071;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-0.774;QD=20.87;ReadPosRankSum=1.691;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3548,396,0 chrXV 728147 . G A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.07;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3318,369,0 chrXV 729380 . A T 4349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=3.168;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.144;QD=25.73;ReadPosRankSum=1.691;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4349,463,0 chrXV 729585 . T C 3774.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=3.462;HaplotypeScore=13.8102;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=1.219;QD=23.30;ReadPosRankSum=1.647;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3774,414,0 chrXV 729726 . A G 3385.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=23.34;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3385,372,0 chrXV 729765 . A C 2960 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=20.27;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2993,324,0 chrXV 729766 . G T 3010 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.61;MQ0=0;QD=20.76;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3043,321,0 chrXV 729770 . T C 2757 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=151;Dels=0.00;FS=3.016;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=0;MQRankSum=-1.945;QD=18.26;ReadPosRankSum=2.401;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:2790,306,0 chrXV 729812 . C T 2021 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=16.17;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2054,219,0 chrXV 729813 . G C 1913 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=15.18;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:1946,219,0 chrXV 729831 . A G 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=117;Dels=0.00;FS=6.133;HaplotypeScore=8.2295;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=-0.641;QD=17.34;ReadPosRankSum=2.408;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2062,234,0 chrXV 729917 . T A 3091 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=20.61;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3124,336,0 chrXV 729918 . T C 3043 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=20.56;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3076,339,0 chrXV 729934 . C T 3384.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=20.14;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3384,360,0 chrXV 729943 . A T 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=172;Dels=0.00;FS=3.061;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;MQRankSum=1.349;QD=18.71;ReadPosRankSum=1.652;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3252,351,0 chrXV 730011 . C T 3028 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=21.63;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3061,327,0 chrXV 730224 . C T 5445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.494;QD=24.86;ReadPosRankSum=-0.016;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,217:219:99:5445,583,0 chrXV 730479 . G A 6035.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.43;SB=-3.142e+03 GT:AD:DP:GQ:PL 1/1:1,245:247:99:6035,637,0 chrXV 730821 . A G 3752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=165;Dels=0.00;FS=3.174;HaplotypeScore=14.2686;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.347;QD=22.74;ReadPosRankSum=1.689;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:1,161:165:99:3752,414,0 chrXV 731010 . A T 4701.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.4071;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.39;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4701,499,0 chrXV 731607 . A G 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=153;Dels=0.00;FS=11.476;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.809;QD=22.05;ReadPosRankSum=2.954;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:3,150:153:99:3373,384,0 chrXV 731874 . A T 3813.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=154;Dels=0.00;FS=6.883;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.279;QD=24.76;ReadPosRankSum=2.402;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:3813,414,0 chrXV 732177 . A G 2776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.738;QD=21.35;ReadPosRankSum=1.705;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2809,309,0 chrXV 732393 . C T 3682.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.5334;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3682,390,0 chrXV 732477 . A G 3917.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=177;Dels=0.00;FS=3.136;HaplotypeScore=9.2631;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.148;QD=22.13;ReadPosRankSum=1.653;SB=-2.241e+03 GT:AD:DP:GQ:PL 1/1:1,174:177:99:3917,438,0 chrXV 732609 . A G 4307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=179;Dels=0.00;FS=3.021;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=2.008;QD=24.06;ReadPosRankSum=2.367;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:2,176:179:99:4307,480,0 chrXV 733293 . T C 5025.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.3157;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.036;QD=25.25;ReadPosRankSum=1.715;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:5025,552,0 chrXV 733347 . T C 4196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-1.070;QD=23.57;ReadPosRankSum=1.635;SB=-2.079e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4196,465,0 chrXV 733385 . A G 3376.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.21;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3376,375,0 chrXV 733398 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=4.415;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-0.273;QD=21.27;ReadPosRankSum=1.709;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3269,363,0 chrXV 733489 . A G 4318.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.074;QD=22.97;ReadPosRankSum=1.640;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4318,468,0 chrXV 733796 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.82;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3263,351,0 chrXV 733953 . A G 3955.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.0687;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.10;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3955,435,0 chrXV 734535 . T C 1917 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1950,213,0 chrXV 734684 . C T 1314 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.89;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1347,144,0 chrXV 734908 . T C 2471 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.47;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2504,273,0 chrXV 734940 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.68;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2472,264,0 chrXV 735107 . T A 3688.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.43;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3688,387,0 chrXV 735385 . C T 3549.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.04;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3549,372,0 chrXV 735517 . G A 2743 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.85;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2776,306,0 chrXV 735547 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.30;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2666,285,0 chrXV 735577 . T C 2268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.737;QD=22.46;ReadPosRankSum=1.698;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2301,258,0 chrXV 735678 . T C 2774 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.37;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2807,312,0 chrXV 735877 . G T 3456.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.19;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3456,369,0 chrXV 735907 . A G 3380.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.24;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3380,384,0 chrXV 735970 . A G 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=142;Dels=0.00;FS=10.520;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.029;QD=21.92;ReadPosRankSum=2.921;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:3,137:142:99:3145,345,0 chrXV 736006 . C T 3376.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.07;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3376,366,0 chrXV 736467 . A G 2734 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.78;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2767,306,0 chrXV 736963 . C T 3204 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.09;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3237,351,0 chrXV 737103 . C T 3275.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.2495;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.74;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3275,354,0 chrXV 737262 . G A 4233.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.92;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4233,442,0 chrXV 737281 . A G 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=164;Dels=0.00;FS=6.100;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.236;QD=21.12;ReadPosRankSum=2.932;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:3,159:164:99:3463,375,0 chrXV 737295 . A G 3183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=157;Dels=0.00;FS=3.034;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=1.435;QD=20.27;ReadPosRankSum=2.418;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:2,153:157:99:3216,351,0 chrXV 737529 . T C 3640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=0.678;QD=22.61;ReadPosRankSum=1.689;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3640,408,0 chrXV 737807 . A G 3066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=0.569;QD=23.23;ReadPosRankSum=1.706;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:3099,342,0 chrXV 737916 . A G 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.365;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.306;QD=22.39;ReadPosRankSum=1.698;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2317,252,0 chrXV 737961 . A T 2681 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.11;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2714,288,0 chrXV 738003 . A G 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=3.044;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;MQRankSum=-1.023;QD=19.22;ReadPosRankSum=2.408;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2320,252,0 chrXV 738026 . T C 1632 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;QD=15.25;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1665,180,0 chrXV 738034 . T C 1344 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=0;QD=12.68;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1377,156,0 chrXV 738049 . G A 1237 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=35.77;MQ0=0;QD=12.01;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1270,138,0 chrXV 738050 . A G 1218 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=36.08;MQ0=0;QD=11.71;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1251,141,0 chrXV 738085 . A G 1405 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=13.13;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1438,162,0 chrXV 738093 . C G 1524 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=13.61;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1557,174,0 chrXV 738277 . G A 3495.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=22.0872;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=24.96;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3495,369,0 chrXV 738617 . A T 1785 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1818,195,0 chrXV 739134 . G A 2616 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2649,282,0 chrXV 739347 . T C 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.423;QD=22.84;ReadPosRankSum=1.701;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2614,288,0 chrXV 739380 . G C 3057 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.70;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3090,336,0 chrXV 739494 . G A 3076 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.84;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3109,327,0 chrXV 741033 . T A 5232.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.45;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,233:233:99:5232,588,0 chrXV 741440 . T C 4369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-1.694;QD=22.41;ReadPosRankSum=2.374;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:2,193:195:99:4369,489,0 chrXV 741453 . C T 3981.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.73;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3981,432,0 chrXV 741457 . C T 4114.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=1.512;QD=21.77;ReadPosRankSum=0.871;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4114,432,0 chrXV 741733 . G C 3154 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.2391;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.90;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3187,345,0 chrXV 742127 . T C 2933 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.65;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2966,330,0 chrXV 742150 . T C 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.728;DP=144;Dels=0.00;FS=5.950;HaplotypeScore=8.6400;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.797;QD=22.92;ReadPosRankSum=2.909;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3301,360,0 chrXV 742253 . G A 3365.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.43;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3365,369,0 chrXV 742344 . G C 3540.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.69;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3540,393,0 chrXV 742493 . T A,G 23.24 LowQual;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.259;DP=129;Dels=0.00;FS=8.922;HaplotypeScore=117.4854;MLEAC=1,1;MLEAF=0.500,0.500;MQ=55.15;MQ0=0;MQRankSum=-0.315;QD=0.18;ReadPosRankSum=2.145;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/2:2,7,120:129:32:81,38,32,42,0,36 chrXV 743206 . G C 3703.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=21.6682;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.05;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3703,399,0 chrXV 743254 . T C 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.632;QD=23.60;ReadPosRankSum=1.709;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3516,387,0 chrXV 743338 . G A 4493.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.0283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4493,478,0 chrXV 743656 . C T 5218.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=11.4992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-2.775e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5218,562,0 chrXV 743731 . T C 4560.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.5662;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.69;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4560,504,0 chrXV 744076 . T C 4266.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.744;DP=183;Dels=0.00;FS=9.794;HaplotypeScore=12.8771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.256;QD=23.31;ReadPosRankSum=2.960;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:3,174:183:99:4266,462,0 chrXV 744303 . C A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.9062;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=22.73;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3318,348,0 chrXV 744491 . T C 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=125;Dels=0.01;FS=3.046;HaplotypeScore=15.4329;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.367;QD=22.72;ReadPosRankSum=2.370;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2873,312,0 chrXV 744503 . T C 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=129;Dels=0.02;FS=0.000;HaplotypeScore=20.4198;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-1.127;QD=19.91;ReadPosRankSum=1.622;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2601,285,0 chrXV 744578 . A G 2707 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=19.76;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2740,309,0 chrXV 744580 . T C 2588 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=18.49;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2621,303,0 chrXV 744706 . T C 3150 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.99;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3183,339,0 chrXV 744769 . C T 4126.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=24.27;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4126,441,0 chrXV 744847 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.55;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3364,357,0 chrXV 744871 . A G 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-1.022;QD=23.24;ReadPosRankSum=1.675;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2891,312,0 chrXV 744964 . T C 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=168;Dels=0.00;FS=7.037;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=0.051;QD=17.96;ReadPosRankSum=2.420;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:3051,342,0 chrXV 744967 . G C 2956 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=18.25;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2989,324,0 chrXV 744993 . C T 2732 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.51;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2765,297,0 chrXV 745114 . G T 2090 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.11;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2123,234,0 chrXV 745180 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=22.93;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2234,237,0 chrXV 745192 . T C 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=107;Dels=0.00;FS=10.228;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;MQRankSum=-0.104;QD=20.53;ReadPosRankSum=2.380;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2230,246,0 chrXV 745346 . C A 1591 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.9980;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=17.88;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1624,171,0 chrXV 745409 . A G 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=4.565;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=1.194;QD=24.64;ReadPosRankSum=1.631;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2571,285,0 chrXV 745446 . A C 2157 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.47;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2190,237,0 chrXV 745467 . T C 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-1.732;QD=20.94;ReadPosRankSum=1.697;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2148,234,0 chrXV 745547 . A T 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=168;Dels=0.00;FS=6.703;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-1.117;QD=23.89;ReadPosRankSum=2.405;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:4014,424,0 chrXV 745778 . A G 4246.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.85;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4246,468,0 chrXV 745929 . G A 2937 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.26;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2970,327,0 chrXV 746313 . G A 2955 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.22;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2988,315,0 chrXV 746695 . C T 2604 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.78;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2637,276,0 chrXV 746845 . T C 3102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=1.483;QD=20.27;ReadPosRankSum=1.709;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3135,348,0 chrXV 747091 . A G 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.3791;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.753;QD=21.98;ReadPosRankSum=1.714;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4199,465,0 chrXV 747118 . T C 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=3.316;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-1.315;QD=20.57;ReadPosRankSum=1.714;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:3970,438,0 chrXV 747125 . T C 3688.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.0910;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.31;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3688,405,0 chrXV 747519 . G T 3574.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.65;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3574,381,0 chrXV 747612 . C G 3813.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.54;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3813,414,0 chrXV 747648 . A G 4227.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.13;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4227,468,0 chrXV 747741 . A G 4678.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=196;Dels=0.00;FS=9.508;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.374;QD=23.87;ReadPosRankSum=2.933;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:3,193:196:99:4678,510,0 chrXV 747866 . G A 4320.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.4102;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.15;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4320,477,0 chrXV 747904 . G A 4105.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.9009;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=21.84;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4105,436,0 chrXV 747912 . C T 3618.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.0791;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.21;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3618,387,0 chrXV 747945 . T C 4011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-1.021;QD=21.11;ReadPosRankSum=1.714;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:1,189:190:99:4011,450,0 chrXV 748004 . A C 4058.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.60;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4058,441,0 chrXV 748020 . T C 3562.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=19.46;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3562,384,0 chrXV 748236 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.98;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2952,318,0 chrXV 748371 . C T 2900 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.17;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2933,312,0 chrXV 748445 . A G 2918 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2951,324,0 chrXV 748629 . A C 3859.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.25;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3859,426,0 chrXV 748757 . C G 4626.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.36;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4626,522,0 chrXV 748866 . G T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=19.98;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3537,381,0 chrXV 748883 . T C 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=186;Dels=0.00;FS=3.956;HaplotypeScore=7.3901;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.734;QD=18.40;ReadPosRankSum=1.713;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:3422,384,0 chrXV 748991 . A G 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.545;DP=171;Dels=0.00;FS=5.538;HaplotypeScore=12.3061;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.698;QD=22.40;ReadPosRankSum=2.876;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:3,167:171:99:3830,420,0 chrXV 749079 . G A 3160 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.9635;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.35;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3193,345,0 chrXV 749379 . G T 3577.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3577,381,0 chrXV 749636 . G A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3565,378,0 chrXV 749731 . T C 3610.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3610,393,0 chrXV 750300 . A G 3499.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.48;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3499,390,0 chrXV 751330 . C G 2439 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.78;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2472,279,0 chrXV 751374 . C T 2297 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=21.88;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2330,249,0 chrXV 751406 . G A 2173 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=19.06;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2206,234,0 chrXV 751433 . A G 2046 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;QD=15.62;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2079,228,0 chrXV 751442 . G A 2042 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;QD=14.69;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2075,225,0 chrXV 751445 . C T 2047 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=0;QD=15.51;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2080,219,0 chrXV 751476 . T G 3164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.1622;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;MQRankSum=-0.122;QD=18.50;ReadPosRankSum=1.691;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3197,357,0 chrXV 751511 . G A 3055 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=18.18;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3088,339,0 chrXV 751523 . C T 3407.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.0464;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=21.16;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3407,363,0 chrXV 751571 . C A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.7652;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.65;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3345,366,0 chrXV 752064 . G A 3021 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.73;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3054,330,0 chrXV 752146 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.45;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3269,363,0 chrXV 752184 . A G 2960 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.93;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2993,333,0 chrXV 752228 . C G 2858 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=22.16;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2891,315,0 chrXV 752247 . T C 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.514;QD=21.23;ReadPosRankSum=1.705;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2750,300,0 chrXV 752248 . T C 2686 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=21.15;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2719,297,0 chrXV 752415 . A G 3410.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.73;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3410,387,0 chrXV 752538 . T C 3353.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=24.12;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3353,363,0 chrXV 752580 . C T 3082 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.01;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3115,336,0 chrXV 752598 . T C 2661 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.79;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2694,297,0 chrXV 752616 . G A 2690 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=18.68;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2723,303,0 chrXV 752721 . T C 3422.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.12;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3422,381,0 chrXV 752751 . A G 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=140;Dels=0.00;FS=3.332;HaplotypeScore=7.5280;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.435;QD=22.99;ReadPosRankSum=1.707;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3252,354,0 chrXV 752997 . T A 3010 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=16.3746;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.20;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3043,330,0 chrXV 753168 . A G 2732 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.77;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2765,306,0 chrXV 753808 . T C 3849.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.64;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3849,423,0 chrXV 754003 . T G 3322.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.89;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3322,363,0 chrXV 754232 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.96;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2704,288,0 chrXV 754326 . C G 2617 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.37;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2650,300,0 chrXV 754376 . T G 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.638;QD=21.96;ReadPosRankSum=1.701;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2471,270,0 chrXV 754497 . C T 2524 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.57;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2557,276,0 chrXV 754528 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.47;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2920,306,0 chrXV 754590 . A C 2730 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.94;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2763,309,0 chrXV 754721 . G A 4473.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.18;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4473,489,0 chrXV 754893 . G A 3715.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.22;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3715,405,0 chrXV 755003 . C T 3455.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3455,378,0 chrXV 755090 . A G 2289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=122;Dels=0.00;FS=6.115;HaplotypeScore=2.9266;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=-0.083;QD=18.76;ReadPosRankSum=2.876;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2322,258,0 chrXV 755091 . C T 2341 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=19.51;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2374,261,0 chrXV 755104 . T C 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=125;Dels=0.00;FS=2.973;HaplotypeScore=5.0348;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=-0.764;QD=18.10;ReadPosRankSum=2.410;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2296,258,0 chrXV 755561 . A G 3919.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3919,432,0 chrXV 755735 . C T 4117.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.6071;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.87;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4117,453,0 chrXV 756296 . G A 3479.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.4578;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.35;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3479,375,0 chrXV 756307 . A T 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.1351;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=0.000;QD=20.99;ReadPosRankSum=1.642;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3265,354,0 chrXV 756405 . C A 2676 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.24;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2709,297,0 chrXV 756425 . C G 2888 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.39;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2921,321,0 chrXV 756575 . G A 3602.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.84;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3602,376,0 chrXV 756627 . G A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.87;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4010,447,0 chrXV 756728 . A G 4312.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.94;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4312,480,0 chrXV 756913 . A G 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.270;DP=158;Dels=0.00;FS=5.263;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-2.200;QD=22.37;ReadPosRankSum=3.381;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:4,153:158:99:3534,387,0 chrXV 756950 . C T 4321.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.48;SB=-2.045e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4321,471,0 chrXV 757288 . G A 4419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=189;Dels=0.00;FS=4.168;HaplotypeScore=5.4964;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=0.479;QD=23.38;ReadPosRankSum=1.437;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:4419,460,0 chrXV 757291 . A C 4098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=186;Dels=0.00;FS=4.197;HaplotypeScore=6.8731;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=0.659;QD=22.03;ReadPosRankSum=1.694;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:1,183:186:99:4098,447,0 chrXV 757677 . C T 4777.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.9144;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.64;SB=-2.803e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4777,508,0 chrXV 757700 . A C 5264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=242;Dels=0.00;FS=2.982;HaplotypeScore=7.0311;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-2.246;QD=21.75;ReadPosRankSum=2.419;SB=-2.904e+03 GT:AD:DP:GQ:PL 1/1:2,239:242:99:5264,567,0 chrXV 757746 . A G 5210.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=14.7634;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.753;QD=21.89;ReadPosRankSum=1.717;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:1,236:238:99:5210,561,0 chrXV 758027 . T C 4190.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.1958;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4190,459,0 chrXV 758200 . C T 3357.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3357,357,0 chrXV 758539 . A G 3880.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=167;Dels=0.00;FS=3.314;HaplotypeScore=11.3707;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.818;QD=23.23;ReadPosRankSum=1.690;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,163:167:99:3880,429,0 chrXV 759064 . C T 5757.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=15.7969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,268:272:99:5757,639,0 chrXV 759381 . A G 2273 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.5797;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.24;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2306,252,0 chrXV 759410 . A G 2090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.495;QD=21.33;ReadPosRankSum=1.661;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2123,237,0 chrXV 759629 . T C 1294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;MQRankSum=1.138;QD=18.49;ReadPosRankSum=1.683;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1327,150,0 chrXV 759688 . C T 1940 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=21.80;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1973,213,0 chrXV 759823 . G A 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=12.5017;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.595;QD=23.69;ReadPosRankSum=1.293;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:3255,330,0 chrXV 759919 . A G 3849.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.27;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:3849,432,0 chrXV 759937 . C T 4305.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.74;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4305,456,0 chrXV 760210 . G T 6483.01 PASS AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=14.5063;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.61;SB=-3.625e+03 GT:AD:DP:GQ:PL 1/1:0,299:300:99:6483,691,0 chrXV 760240 . C T 6862.01 PASS AC=2;AF=1.00;AN=2;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=23.4365;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.79;SB=-4.311e+03 GT:AD:DP:GQ:PL 1/1:0,327:330:99:6862,736,0 chrXV 760339 . G A 5332.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=22.4888;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.35;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:1,260:262:99:5332,579,0 chrXV 761281 . G T 2822 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.4897;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.05;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2855,306,0 chrXV 761321 . C T 1922 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.2347;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.30;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:1955,213,0 chrXV 761611 . C T 3864.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.7839;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=26.11;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3864,411,0 chrXV 761645 . T A 3833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.975;QD=24.57;ReadPosRankSum=2.418;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3833,423,0 chrXV 762091 . T A 4286.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=3.6595;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=20.51;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4286,462,0 chrXV 762094 . G A 4163.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.11;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4163,456,0 chrXV 762399 . T C 4224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=184;Dels=0.00;FS=6.236;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.554;QD=22.96;ReadPosRankSum=2.423;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4224,468,0 chrXV 762537 . T C 4772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=194;Dels=0.00;FS=2.562;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=60.54;MQ0=0;MQRankSum=-0.503;QD=24.60;ReadPosRankSum=2.386;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4772,525,0 chrXV 762665 . T C 4996.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=11.7865;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.71;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:0,219:220:99:4996,552,0 chrXV 763240 . G C 4158.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4158,447,0 chrXV 763346 . G A 3086 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.8185;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.14;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3119,342,0 chrXV 763364 . C G 2939 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.61;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2972,333,0 chrXV 763413 . C A 2756 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.36;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2789,297,0 chrXV 763613 . C T 2889 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.3213;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.93;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2922,312,0 chrXV 763671 . T C 2497 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.36;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2530,276,0 chrXV 763679 . C G 2400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=126;Dels=0.00;FS=4.402;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-1.676;QD=19.05;ReadPosRankSum=1.704;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2433,249,0 chrXV 763784 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.61;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3273,354,0 chrXV 763915 . T A 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=136;Dels=0.00;FS=2.929;HaplotypeScore=6.6601;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=0.859;QD=25.07;ReadPosRankSum=2.413;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3409,369,0 chrXV 763953 . T C 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=155;Dels=0.00;FS=2.866;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;MQRankSum=-1.895;QD=20.32;ReadPosRankSum=2.354;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3183,360,0 chrXV 763970 . T C 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=165;Dels=0.00;FS=5.538;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=-1.079;QD=19.13;ReadPosRankSum=2.787;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3189,360,0 chrXV 763973 . A G 3196 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=18.80;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3229,360,0 chrXV 764027 . G A 5308.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.59;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,232:235:99:5308,565,0 chrXV 764062 . G A 5894.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.8700;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.74;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5894,622,0 chrXV 764138 . T C 4585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=203;Dels=0.00;FS=2.931;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-1.397;QD=22.59;ReadPosRankSum=2.425;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4585,501,0 chrXV 764174 . A G 4342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-0.413;QD=20.98;ReadPosRankSum=1.772;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:3,204:207:99:4342,462,0 chrXV 764185 . T C 4346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=203;Dels=0.00;FS=3.609;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=0.463;QD=21.41;ReadPosRankSum=-1.715;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4346,461,0 chrXV 764224 . T C 4835.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.7102;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=21.68;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4835,528,0 chrXV 764348 . G A 3965.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.9144;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.03;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3965,423,0 chrXV 764381 . A G 3715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=164;Dels=0.00;FS=6.094;HaplotypeScore=18.9064;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-0.584;QD=22.65;ReadPosRankSum=2.907;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:3,159:164:99:3715,411,0 chrXV 764453 . C T 4028.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.15;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4028,432,0 chrXV 764588 . A G 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.513;DP=125;Dels=0.00;FS=3.893;HaplotypeScore=8.2414;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.649;QD=22.32;ReadPosRankSum=1.649;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2823,288,0 chrXV 764698 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.0739;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2999,321,0 chrXV 764789 . C T 2360 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2393,258,0 chrXV 764849 . C T 2887 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.26;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2920,312,0 chrXV 765269 . T C 4352.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.426;QD=24.04;ReadPosRankSum=1.694;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4352,483,0 chrXV 765403 . A G 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=183;Dels=0.00;FS=2.819;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.060;QD=22.75;ReadPosRankSum=2.423;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4163,453,0 chrXV 765602 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.03;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2773,303,0 chrXV 765690 . A C 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=97;Dels=0.00;FS=8.596;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.859;QD=22.96;ReadPosRankSum=2.398;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:2,94:97:99:2260,252,0 chrXV 766103 . A T 5332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=237;Dels=0.00;FS=3.067;HaplotypeScore=27.0164;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.042;QD=22.50;ReadPosRankSum=1.657;SB=-2.971e+03 GT:AD:DP:GQ:PL 1/1:1,235:237:99:5332,582,0 chrXV 766246 . G A 3887.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.9653;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.34;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3887,411,0 chrXV 766572 . T C 2066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=3.774;HaplotypeScore=4.9204;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=-1.136;QD=22.22;ReadPosRankSum=1.695;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2099,228,0 chrXV 766599 . C A 2028 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=22.04;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2061,225,0 chrXV 766607 . A G 1895 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=21.06;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1928,216,0 chrXV 766612 . G A 1998 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=23.51;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2031,219,0 chrXV 766681 . G A 1505 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.46;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1538,165,0 chrXV 766797 . C A 245 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=9.80;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:30:278,30,0 chrXV 766799 . G A 243 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.04;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=10.57;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,21:22:30:276,30,0 chrXV 766864 . G A 1587 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.69;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1620,174,0 chrXV 766910 . T C 1697 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.24;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1730,192,0 chrXV 766986 . T C 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-1.654;QD=24.49;ReadPosRankSum=1.615;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2213,249,0 chrXV 767370 . T A 4477.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.159;QD=24.20;ReadPosRankSum=1.657;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:4477,472,0 chrXV 767756 . G A 3527.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=12.7634;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=25.01;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3527,375,0 chrXV 767801 . A G 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=128;Dels=0.00;FS=3.829;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.595;QD=21.73;ReadPosRankSum=1.705;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2815,309,0 chrXV 767815 . C T 2725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=3.928;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.825;QD=21.63;ReadPosRankSum=1.677;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2758,294,0 chrXV 767852 . C G 2738 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0766;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.90;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2771,300,0 chrXV 767992 . A G 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=172;Dels=0.00;FS=6.525;HaplotypeScore=6.5356;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=0.138;QD=18.53;ReadPosRankSum=2.377;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:2,167:172:99:3220,351,0 chrXV 768001 . G A 3435.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.45;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3435,381,0 chrXV 768090 . T C 1860 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.9970;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=19.79;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1893,207,0 chrXV 768129 . T A 2198 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.3010;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.80;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2231,240,0 chrXV 768226 . A G 1749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.522;DP=106;Dels=0.00;FS=4.977;HaplotypeScore=16.4574;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.284;QD=16.50;ReadPosRankSum=3.752;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:5,98:106:99:1782,198,0 chrXV 768428 . G A 2299 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=20.17;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2332,249,0 chrXV 768429 . T C 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=117;Dels=0.00;FS=2.592;HaplotypeScore=2.7888;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=-1.923;QD=19.30;ReadPosRankSum=2.923;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2291,249,0 chrXV 768439 . A G 2325 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=18.90;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2358,252,0 chrXV 768642 . T C 5117.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=17.2753;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.194;QD=22.74;ReadPosRankSum=1.717;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:1,222:225:99:5117,570,0 chrXV 768822 . G C 5664.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=22.2355;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.78;SB=-2.927e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:5664,639,0 chrXV 769241 . A G 7242.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=15.8605;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.38;SB=-3.364e+03 GT:AD:DP:GQ:PL 1/1:0,294:297:99:7242,790,0 chrXV 769473 . C T 5355.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=22.31;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:0,237:240:99:5355,582,0 chrXV 769811 . A G 1531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.496;DP=121;Dels=0.02;FS=2.595;HaplotypeScore=9.3505;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=1.844;QD=12.65;ReadPosRankSum=1.478;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:3,113:119:99:1564,177,0 chrXV 769827 . A G 1468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.745;DP=131;Dels=0.00;FS=2.568;HaplotypeScore=10.3832;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.744;QD=11.21;ReadPosRankSum=2.946;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:3,128:131:99:1501,171,0 chrXV 770027 . A T 1918 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=25.92;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1951,210,0 chrXV 770037 . T C 1806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=4.205;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;MQRankSum=-1.074;QD=22.86;ReadPosRankSum=1.688;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1839,204,0 chrXV 770068 . A G 1819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=3.040;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;MQRankSum=0.602;QD=20.44;ReadPosRankSum=2.394;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:2,86:89:99:1852,204,0 chrXV 770094 . A C 2304 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=20.76;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2337,261,0 chrXV 770118 . A C 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=145;Dels=0.00;FS=8.962;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;MQRankSum=-0.432;QD=20.21;ReadPosRankSum=2.416;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2964,330,0 chrXV 770179 . T C 2878 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;MQRankSum=-0.333;QD=18.33;ReadPosRankSum=1.710;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:2911,315,0 chrXV 770183 . G A 2799 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=19.44;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2832,300,0 chrXV 770184 . G A 2832 SnpCluster AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=19.67;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2865,303,0 chrXV 770215 . T G 2276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;MQRankSum=-0.725;QD=16.14;ReadPosRankSum=1.683;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2309,255,0 chrXV 770241 . A C 1914 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=14.72;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,126:129:99:1947,219,0 chrXV 770265 . C T 2227 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=15.57;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2260,240,0 chrXV 770280 . A G 2797 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.1691;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=17.93;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2830,312,0 chrXV 770326 . A G 3697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=4.8653;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-1.502;QD=20.43;ReadPosRankSum=1.713;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3697,402,0 chrXV 770554 . T C 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=111;Dels=0.00;FS=5.059;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-0.111;QD=19.85;ReadPosRankSum=1.700;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2236,246,0 chrXV 770719 . T C 2117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.339;DP=98;Dels=0.00;FS=6.066;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-0.415;QD=21.60;ReadPosRankSum=1.093;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2150,215,0 chrXV 770734 . A G 1967 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.10;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2000,219,0 chrXV 770766 . A C 2218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.6742;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.682;QD=22.40;ReadPosRankSum=-0.262;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2251,221,0 chrXV 771010 . G T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.3262;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=23.25;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3603,379,0 chrXV 771025 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=21.86;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3497,378,0 chrXV 771042 . G C 2722 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=17.34;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:2755,309,0 chrXV 771051 . C T 2791 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=17.44;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2824,297,0 chrXV 771135 . C T 4205.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.5953;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.90;SB=-2.330e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4205,448,0 chrXV 771291 . T C 4330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=188;Dels=0.00;FS=2.778;HaplotypeScore=11.5263;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.202;QD=23.03;ReadPosRankSum=2.384;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4330,486,0 chrXV 771765 . C T 2697 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.40;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2730,291,0 chrXV 772189 . C T 2452 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.70;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2485,276,0 chrXV 772400 . C A 2109 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.92;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2142,234,0 chrXV 772584 . T C 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.282;QD=21.91;ReadPosRankSum=1.625;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2860,315,0 chrXV 772912 . C T 5792.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=16.3338;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.19;SB=-3.328e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:5792,630,0 chrXV 773149 . G A 4978.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=17.1886;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:4978,529,0 chrXV 773399 . A C 3314.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.34;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3314,375,0 chrXV 773455 . A G 3173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.767;QD=22.50;ReadPosRankSum=1.707;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:3206,348,0 chrXV 773546 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.09;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2852,306,0 chrXV 773666 . T C 3602.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3602,396,0 chrXV 773710 . C T 2749 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=22.3410;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.98;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2782,309,0 chrXV 773959 . T C 2849 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=22.43;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2882,321,0 chrXV 773995 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.52;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2830,303,0 chrXV 774085 . T G 2004 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=18.91;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2037,225,0 chrXV 774112 . G A 1766 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=40.98;MQ0=0;QD=17.31;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1799,192,0 chrXV 774129 . C T 1419 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.95;MQ0=0;QD=13.91;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1452,162,0 chrXV 774148 . A C 1162 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.74;MQ0=0;QD=12.63;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1195,135,0 chrXV 774153 . G A 1067 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=38.56;MQ0=0;QD=11.35;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1100,117,0 chrXV 774172 . T C 1235 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;QD=13.42;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1268,141,0 chrXV 774251 . A T 2333 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=22.43;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2366,252,0 chrXV 774265 . C G 1984 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=21.33;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2017,216,0 chrXV 774269 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.6263;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=21.74;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1990,210,0 chrXV 774457 . G C 3738.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=25.78;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3738,411,0 chrXV 774673 . A G 3421.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.1649;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.51;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3421,381,0 chrXV 774742 . A G 2723 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.61;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2756,303,0 chrXV 774747 . G A 2834 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.15;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2867,306,0 chrXV 774866 . A G 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.540;QD=23.58;ReadPosRankSum=1.595;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:3028,339,0 chrXV 774965 . T C 3179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.184;DP=139;Dels=0.00;FS=2.879;HaplotypeScore=17.9610;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=2.149;QD=22.87;ReadPosRankSum=2.414;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3212,354,0 chrXV 775432 . G A 2327 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=18.18;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2360,264,0 chrXV 775462 . G A 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.475;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=101.4720;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;MQRankSum=0.603;QD=18.57;ReadPosRankSum=-1.039;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2540,264,0 chrXV 775735 . T A 3823.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.89;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3823,405,0 chrXV 776223 . A G 2392 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2425,264,0 chrXV 776725 . C T 4307.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4307,459,0 chrXV 776874 . C T 4458.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=22.3075;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.74;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4458,480,0 chrXV 776943 . A C 5058.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.10;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5058,555,0 chrXV 777123 . G A 6563.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=23.19;SB=-3.325e+03 GT:AD:DP:GQ:PL 1/1:0,279:283:99:6563,697,0 chrXV 777138 . G A 6553.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=12.2481;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.06;SB=-3.447e+03 GT:AD:DP:GQ:PL 1/1:0,296:297:99:6553,697,0 chrXV 777201 . G A 6679.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=3.2524;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.27;SB=-4.152e+03 GT:AD:DP:GQ:PL 1/1:0,314:314:99:6679,718,0 chrXV 777225 . C T 6812.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.41;SB=-3.913e+03 GT:AD:DP:GQ:PL 1/1:0,303:304:99:6812,715,0 chrXV 777268 . A G 5255.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.307;DP=261;Dels=0.00;FS=8.698;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.291;QD=20.13;ReadPosRankSum=3.354;SB=-3.070e+03 GT:AD:DP:GQ:PL 1/1:4,256:261:99:5255,579,0 chrXV 777290 . G C 5178.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.96;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:0,244:247:99:5178,567,0 chrXV 777461 . C T 4523.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.50;SB=-2.214e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4523,478,0 chrXV 777483 . C T 4271.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.53;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4271,456,0 chrXV 777500 . A C 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=195;Dels=0.00;FS=5.890;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.694;QD=19.11;ReadPosRankSum=2.902;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:3,191:195:99:3727,408,0 chrXV 777645 . G A 3075 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.6669;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.81;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3108,336,0 chrXV 777890 . C T 3860.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.13;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3860,420,0 chrXV 778024 . C T 3870.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.9171;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=24.19;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,156:160:99:3870,411,0 chrXV 778545 . T C 1599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-2.309;QD=22.84;ReadPosRankSum=2.380;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1632,183,0 chrXV 778862 . A G 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.487;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.842;QD=23.58;ReadPosRankSum=1.754;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3749,393,0 chrXV 778879 . A G 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.189;DP=161;Dels=0.00;FS=6.269;HaplotypeScore=11.2849;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.898;QD=21.03;ReadPosRankSum=2.419;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3386,375,0 chrXV 779089 . A C 2734 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3917;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.53;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2767,300,0 chrXV 779097 . G A 2928 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=27.9889;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=19.65;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2961,315,0 chrXV 779132 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=18.93;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2740,294,0 chrXV 779194 . A G 2589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=122;Dels=0.00;FS=7.091;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.305;QD=21.22;ReadPosRankSum=2.408;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:2,115:122:99:2622,285,0 chrXV 779252 . C T 3601.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.3608;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.65;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3601,384,0 chrXV 779309 . G C 3137 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.41;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3170,348,0 chrXV 779663 . A G 3365.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.2969;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.57;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3365,375,0 chrXV 779773 . T C 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=7.434;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;MQRankSum=-0.866;QD=20.17;ReadPosRankSum=1.708;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2938,318,0 chrXV 779788 . T A 2618 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;QD=18.83;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2651,285,0 chrXV 779801 . C T 2449 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=0;QD=18.98;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2482,264,0 chrXV 779821 . A T 1684 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;QD=16.35;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1717,192,0 chrXV 779822 . T C 1638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=103;Dels=0.00;FS=8.066;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;MQRankSum=-1.589;QD=15.90;ReadPosRankSum=2.306;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1671,192,0 chrXV 780221 . C T 2284 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.2574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2317,246,0 chrXV 780477 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=25.63;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2468,261,0 chrXV 780631 . C T 2424 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2457,258,0 chrXV 780728 . A G 3379.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.38;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3379,375,0 chrXV 780732 . C A 3657.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=24.88;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3657,393,0 chrXV 780764 . C G 3780.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.37;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3780,411,0 chrXV 780823 . G T 3898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.3718;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.304;QD=23.62;ReadPosRankSum=0.703;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3898,426,0 chrXV 780858 . G C 3718.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.0735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3718,402,0 chrXV 781079 . G A 4490.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.14;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4490,475,0 chrXV 781222 . T C 3642.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3642,405,0 chrXV 781648 . C A 3493.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.4001;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.29;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3493,372,0 chrXV 781811 . G C 4717.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4717,513,0 chrXV 781897 . C A 3569.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.99;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3569,402,0 chrXV 781943 . G A 3647.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.72;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3647,390,0 chrXV 782167 . G T 3882.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.6800;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.97;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3882,423,0 chrXV 782356 . A C 3309.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.14;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3309,366,0 chrXV 782474 . G C 3761.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3761,408,0 chrXV 782578 . G A 2561 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.33;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2594,285,0 chrXV 782587 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=21.51;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2700,285,0 chrXV 782716 . G A 3944.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3944,415,0 chrXV 782821 . A T 3695.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.24;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3695,411,0 chrXV 783414 . T G 961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.274;QD=24.64;ReadPosRankSum=1.641;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:1,37:39:99:994,108,0 chrXV 783444 . C G 653 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=20.41;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:75:686,75,0 chrXV 783455 . A G 645 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=19.55;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:75:678,75,0 chrXV 783522 . C G 859 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.09;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:892,99,0 chrXV 783587 . G A 1703 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.52;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1736,192,0 chrXV 783659 . G A 2122 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=18.14;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2155,240,0 chrXV 783669 . T C 2105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=-0.442;QD=17.40;ReadPosRankSum=2.909;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2138,237,0 chrXV 783674 . T C 2189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.6431;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=-0.046;QD=16.34;ReadPosRankSum=2.376;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2222,243,0 chrXV 783919 . G A 3987.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=15.2170;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.15;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3987,426,0 chrXV 784584 . A G 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=2.973;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.738;QD=22.62;ReadPosRankSum=2.377;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:3110,345,0 chrXV 784606 . A G 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.866;QD=22.96;ReadPosRankSum=1.707;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:1,135:139:99:3224,354,0 chrXV 784642 . G A 3070 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.41;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3103,330,0 chrXV 784734 . C T 2933 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2966,312,0 chrXV 784813 . C G 3418.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.09;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3418,384,0 chrXV 785050 . T C 4019.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=178;Dels=0.00;FS=3.035;HaplotypeScore=19.4993;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.937;QD=22.58;ReadPosRankSum=2.380;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4019,441,0 chrXV 785112 . G A 4433.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.9509;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.73;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4433,475,0 chrXV 785151 . A C 3288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;MQRankSum=0.403;QD=19.12;ReadPosRankSum=1.712;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3288,357,0 chrXV 785154 . T G 3338.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=4.150;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=-0.031;QD=19.41;ReadPosRankSum=1.712;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,168:172:99:3338,360,0 chrXV 785163 . G A 3138 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=18.57;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3171,339,0 chrXV 785203 . A C 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.773;DP=166;Dels=0.00;FS=6.099;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-1.006;QD=19.27;ReadPosRankSum=2.920;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:3,161:166:99:3232,351,0 chrXV 785252 . A G 4432.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.3361;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.33;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4432,480,0 chrXV 785674 . A G 3992.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.1349;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.79;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:3992,441,0 chrXV 785820 . T A 4632.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=199;Dels=0.00;FS=4.600;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.896;QD=23.28;ReadPosRankSum=1.697;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4632,495,0 chrXV 785982 . C T 2895 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2928,321,0 chrXV 786510 . T C 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=5.863;HaplotypeScore=15.7927;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.038;QD=22.27;ReadPosRankSum=1.681;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3062,345,0 chrXV 786645 . A G 2681 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.9851;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.78;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2714,294,0 chrXV 786708 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=24.46;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2234,237,0 chrXV 786840 . T C 2197 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.75;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2230,243,0 chrXV 786986 . T A 2225 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.60;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2258,246,0 chrXV 787002 . A T 2165 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=100.2457;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=17.60;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2198,240,0 chrXV 787507 . G A 3024 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3057,321,0 chrXV 787569 . G A 2904 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.25;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2937,315,0 chrXV 787600 . C T 2956 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.03;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2989,321,0 chrXV 787943 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.5456;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.40;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3032,318,0 chrXV 787950 . A G 2840 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.59;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2873,312,0 chrXV 788235 . T C 4965.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.9793;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.42;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4965,561,0 chrXV 788275 . C T 5062.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.22;SB=-2.639e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5062,535,0 chrXV 788305 . G A 5275.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=8.3903;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.35;SB=-2.961e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5275,576,0 chrXV 788386 . C T 6045.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=11.3606;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.61;SB=-3.394e+03 GT:AD:DP:GQ:PL 1/1:0,253:256:99:6045,643,0 chrXV 789087 . G A 2579 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.10;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2612,285,0 chrXV 789530 . C T 3304.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.88;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3304,357,0 chrXV 789595 . T C 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=143;Dels=0.00;FS=5.328;HaplotypeScore=20.7977;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.461;QD=21.71;ReadPosRankSum=2.922;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:3137,345,0 chrXV 789650 . C T 3192 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.64;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3225,342,0 chrXV 789672 . A G 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=141;Dels=0.00;FS=10.199;HaplotypeScore=2.7949;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=0.850;QD=19.44;ReadPosRankSum=2.950;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:2774,312,0 chrXV 789673 . C T 2956 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.7949;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=21.27;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2989,318,0 chrXV 789699 . T C 2759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.347;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.750;QD=20.59;ReadPosRankSum=1.706;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2792,300,0 chrXV 789868 . T A 2416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=114;Dels=0.00;FS=9.169;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.032;QD=21.19;ReadPosRankSum=2.320;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2449,264,0 chrXV 790068 . C A 2823 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2856,303,0 chrXV 790680 . A C 4244.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.9803;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.11;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4244,465,0 chrXV 790997 . T C 3455.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3455,387,0 chrXV 791449 . C T 4512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.407;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.0781;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.679;QD=24.93;ReadPosRankSum=-1.234;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4512,458,0 chrXV 791498 . T C 3611.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=14.6019;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.75;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3611,402,0 chrXV 791600 . A G 2820 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2853,309,0 chrXV 792267 . C T 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.043;QD=21.15;ReadPosRankSum=0.406;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,164:169:99:3575,378,0 chrXV 792500 . C G 3270.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3270,360,0 chrXV 792544 . G A 2960 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.4894;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.60;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2993,309,0 chrXV 792948 . T C 3042 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3075,333,0 chrXV 793037 . A G 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.885;QD=23.11;ReadPosRankSum=1.657;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3246,351,0 chrXV 794697 . G C 3290.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.4389;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3290,360,0 chrXV 794866 . T A 2748 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2781,297,0 chrXV 795061 . G A 3426.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.4752;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3426,363,0 chrXV 795618 . G A 3118 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3151,342,0 chrXV 796340 . T G 6670.01 filter AC=2;AF=1.00;AN=2;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=26.9881;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=18.43;SB=-3.571e+03 GT:AD:DP:GQ:PL 1/1:0,360:362:99:6670,732,0 chrXV 796472 . C A 5174.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.5220;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=21.74;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5174,547,0 chrXV 796482 . C A 4899.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=21.12;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:4899,525,0 chrXV 796494 . G A 4608.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.74;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4608,498,0 chrXV 796728 . T C 4515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=13.7629;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-1.173;QD=20.90;ReadPosRankSum=2.154;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:3,213:216:99:4515,481,0 chrXV 797036 . A G 4419.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.5405;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.66;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4419,489,0 chrXV 797329 . C T 2358 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=20.33;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2391,249,0 chrXV 797352 . T A 2126 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.33;MQ0=0;QD=17.87;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2159,228,0 chrXV 797362 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=16.26;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2017,213,0 chrXV 797376 . T C 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=3.691;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;MQRankSum=-0.726;QD=15.15;ReadPosRankSum=1.676;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:1911,207,0 chrXV 797395 . C T 1760 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=15.17;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1793,189,0 chrXV 798032 . T C 10221.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=461;Dels=0.00;FS=2.692;HaplotypeScore=19.5102;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.217;QD=22.17;ReadPosRankSum=2.428;SB=-4.530e+03 GT:AD:DP:GQ:PL 1/1:2,456:461:99:10221,1126,0 chrXV 798206 . A T 8187.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=365;Dels=0.00;FS=2.614;HaplotypeScore=17.3579;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.650;QD=22.43;ReadPosRankSum=2.382;SB=-3.287e+03 GT:AD:DP:GQ:PL 1/1:2,362:365:99:8187,859,0 chrXV 798241 . C A 7847.01 filter AC=2;AF=1.00;AN=2;DP=381;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.60;SB=-2.640e+03 GT:AD:DP:GQ:PL 1/1:0,380:381:99:7847,838,0 chrXV 798886 . C T 4143.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.2898;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.89;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4143,444,0 chrXV 798916 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.96;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3535,387,0 chrXV 799117 . C T 2575 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2608,276,0 chrXV 799360 . C T 2675 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2708,291,0 chrXV 799894 . T A 3197 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.59;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3230,345,0 chrXV 800155 . C T 2819 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.37;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2852,306,0 chrXV 800190 . T A 2603 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.51;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2636,285,0 chrXV 800204 . G A 2683 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.96;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2716,297,0 chrXV 800527 . T C 4437.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4437,489,0 chrXV 800594 . G A 4803.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.63;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4803,508,0 chrXV 800895 . C T 2297 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=20.69;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2330,246,0 chrXV 800897 . C T 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.581;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.9880;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=0.618;QD=18.79;ReadPosRankSum=0.648;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2232,246,0 chrXV 800964 . T C 2667 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.20;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2700,300,0 chrXV 801084 . G A 3313.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=21.65;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3313,357,0 chrXV 801098 . G A 3328.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=21.75;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3328,351,0 chrXV 801285 . C T 3103 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.2686;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.49;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3136,342,0 chrXV 801593 . A T 4263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=185;Dels=0.00;FS=10.373;HaplotypeScore=11.6182;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.103;QD=23.04;ReadPosRankSum=2.832;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:3,182:185:99:4263,468,0 chrXV 802374 . T C 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=118;Dels=0.00;FS=4.808;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.528;QD=21.88;ReadPosRankSum=1.703;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2615,285,0 chrXV 802733 . G A 4493.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4493,477,0 chrXV 802815 . C T 4408.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.19;SB=-2.369e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4408,463,0 chrXV 804011 . A G 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.248;QD=23.04;ReadPosRankSum=1.605;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3190,351,0 chrXV 804090 . G T 1791 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1824,192,0 chrXV 804513 . T C 4835.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4835,525,0 chrXV 804694 . C A 5098.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.39;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5098,544,0 chrXV 804850 . A T 3531.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.5259;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.38;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3531,390,0 chrXV 804884 . T C 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=6.549;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.516;QD=22.20;ReadPosRankSum=1.653;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2941,324,0 chrXV 805025 . C G 3186 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.60;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3219,354,0 chrXV 805104 . A G 2731 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.96;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2764,312,0 chrXV 805140 . C T 2332 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=19.76;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2365,258,0 chrXV 805146 . A G 2241 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=18.52;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2274,252,0 chrXV 805185 . A C 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-1.561;QD=18.44;ReadPosRankSum=1.683;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2651,297,0 chrXV 805851 . T C 4766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.539;QD=22.80;ReadPosRankSum=1.715;SB=-2.610e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4766,540,0 chrXV 805899 . C A 4799.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.88;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4799,534,0 chrXV 806194 . G A 4025.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=25.00;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4025,441,0 chrXV 806226 . T C 3606.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=177;Dels=0.00;FS=2.658;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-1.561;QD=20.37;ReadPosRankSum=2.422;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3606,399,0 chrXV 806232 . A G 3594.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=183;Dels=0.00;FS=9.398;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=0.913;QD=19.64;ReadPosRankSum=2.395;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:2,177:183:99:3594,402,0 chrXV 806274 . A G 3821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=195;Dels=0.00;FS=4.320;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-1.552;QD=19.59;ReadPosRankSum=1.714;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,191:195:99:3821,426,0 chrXV 806319 . C T 5229.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.38;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:5229,562,0 chrXV 806960 . G T 3682.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.5388;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.30;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3682,396,0 chrXV 807285 . T G 2369 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;QD=16.45;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2402,264,0 chrXV 807286 . T C 2416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=3.358;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;MQRankSum=-1.223;QD=16.78;ReadPosRankSum=1.635;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2449,264,0 chrXV 807324 . A G 3024 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=17.58;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3057,339,0 chrXV 807337 . T C 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=-0.325;QD=17.92;ReadPosRankSum=1.690;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2989,336,0 chrXV 807453 . C T 2741 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=22.47;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2774,306,0 chrXV 807631 . A C 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=4.216;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=1.233;QD=24.93;ReadPosRankSum=1.706;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3291,363,0 chrXV 807798 . G C 2665 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=23.58;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2698,300,0 chrXV 807840 . T A 2753 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.7090;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.57;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2786,297,0 chrXV 807849 . A G 2528 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=21.42;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2561,282,0 chrXV 807946 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.02;FS=0.000;HaplotypeScore=2.9246;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.49;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1982,210,0 chrXV 807953 . G A 2007 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.1768;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=19.30;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2040,219,0 chrXV 808038 . G A 2372 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=24.71;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2405,252,0 chrXV 808135 . C A 2021 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=21.27;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2054,219,0 chrXV 808141 . G A 2157 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=21.36;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2190,234,0 chrXV 808174 . T C 2371 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=20.44;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2404,270,0 chrXV 808281 . T C 3616.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.77;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3616,405,0 chrXV 808425 . A G 3527.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.75;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3527,390,0 chrXV 808584 . C G 2882 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2915,321,0 chrXV 808677 . G A 3398.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.5924;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.43;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3398,366,0 chrXV 808980 . T A 4100.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.0964;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.26;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:4100,430,0 chrXV 809071 . C T 3183 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.40;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3216,339,0 chrXV 809162 . G T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.48;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3598,381,0 chrXV 809274 . G A 2746 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.09;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2779,294,0 chrXV 809343 . A G 3775.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=154;Dels=0.00;FS=7.474;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.120;QD=24.51;ReadPosRankSum=2.385;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:2,151:154:99:3775,414,0 chrXV 809376 . T C 3646.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.6623;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.417;QD=22.93;ReadPosRankSum=1.688;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3646,411,0 chrXV 809460 . C T 3803.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3803,414,0 chrXV 809724 . C T 4279.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.76;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4279,456,0 chrXV 809812 . A G 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.797;QD=21.02;ReadPosRankSum=1.711;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3427,384,0 chrXV 809895 . G A 3044 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.99;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3077,324,0 chrXV 809913 . C T 2799 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.99;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2832,297,0 chrXV 809961 . A G 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.7919;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-0.171;QD=20.30;ReadPosRankSum=1.708;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:2997,342,0 chrXV 810088 . T G 3657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.755;DP=160;Dels=0.00;FS=5.538;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-1.057;QD=22.86;ReadPosRankSum=2.931;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3657,402,0 chrXV 810364 . G T 3285.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.98;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3285,354,0 chrXV 810592 . C T 2630 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.10;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2663,282,0 chrXV 810817 . C G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.13;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3269,354,0 chrXV 810945 . G A 3613.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.58;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3613,381,0 chrXV 811289 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.70;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2780,303,0 chrXV 811738 . C T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3647,393,0 chrXV 812177 . T A 2939 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.27;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2972,309,0 chrXV 812182 . G A 3095 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.10;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3128,324,0 chrXV 812380 . C T 3558.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.88;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3558,381,0 chrXV 812662 . G A 3777.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.98;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3777,397,0 chrXV 812674 . C T 3782.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=20.33;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3782,399,0 chrXV 813776 . T A 2426 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.39;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2459,270,0 chrXV 813976 . T C 510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.199;DP=64;Dels=0.00;FS=18.278;HaplotypeScore=6.7273;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-1.395;QD=7.97;ReadPosRankSum=3.312;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:4,60:64:60:543,60,0 chrXV 814261 . G A 4327.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.3802;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.19;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4327,462,0 chrXV 814304 . A T 4127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.411;DP=180;Dels=0.00;FS=5.196;HaplotypeScore=19.4876;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.961;QD=22.93;ReadPosRankSum=3.362;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:4,176:180:99:4127,436,0 chrXV 814685 . G A 3537.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=3.293;HaplotypeScore=6.3753;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.133;QD=24.56;ReadPosRankSum=0.351;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3537,372,0 chrXV 814826 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.8931;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.15;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3500,375,0 chrXV 815003 . T C 3766.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=167;Dels=0.00;FS=6.531;HaplotypeScore=8.5211;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=1.640;QD=22.55;ReadPosRankSum=2.405;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3766,420,0 chrXV 815030 . C T 3464.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.49;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3464,378,0 chrXV 815061 . T C 3748.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.85;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3748,411,0 chrXV 815222 . A G 4237.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=190;Dels=0.00;FS=3.580;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.435;QD=22.30;ReadPosRankSum=1.714;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:1,186:190:99:4237,480,0 chrXV 815249 . G A 3925.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.33;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3925,415,0 chrXV 815267 . C T 3756.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.09;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3756,405,0 chrXV 815330 . T C 3946.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.1516;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.158;QD=20.88;ReadPosRankSum=1.677;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:3946,438,0 chrXV 815595 . G A 4080.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4080,453,0 chrXV 815746 . T C 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=146;Dels=0.01;FS=5.058;HaplotypeScore=9.2587;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.142;QD=23.39;ReadPosRankSum=1.708;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,141:145:99:3415,375,0 chrXV 815934 . C T 2066 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.89;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2099,222,0 chrXV 816109 . C T 2944 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2977,315,0 chrXV 816176 . A G 2724 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.79;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2757,318,0 chrXV 816215 . C G 3114 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.3841;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.52;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3147,357,0 chrXV 816326 . G A 4031.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.58;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4031,441,0 chrXV 816467 . A T 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=159;Dels=0.00;FS=7.106;HaplotypeScore=14.3810;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.241;QD=22.00;ReadPosRankSum=2.372;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3498,381,0 chrXV 816611 . A G 2983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-0.410;QD=19.62;ReadPosRankSum=1.687;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3016,336,0 chrXV 816620 . G A 3000 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.74;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3033,330,0 chrXV 816745 . A G 4061.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=176;Dels=0.00;FS=6.829;HaplotypeScore=16.6108;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.653;QD=23.07;ReadPosRankSum=2.365;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:4061,444,0 chrXV 816857 . C T 3941.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.18;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3941,420,0 chrXV 816972 . C T 4423.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=24.04;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4423,474,0 chrXV 816997 . G A 5032.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=24.67;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5032,541,0 chrXV 817129 . T C 3652.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.6662;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3652,399,0 chrXV 817342 . C T 5292.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=15.4747;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.84;SB=-2.412e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5292,565,0 chrXV 817750 . C T 3699.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.4009;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.26;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3699,393,0 chrXV 817819 . A G 2950 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.07;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2983,324,0 chrXV 819244 . A G 3620.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3620,399,0 chrXV 820839 . T A 2110 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.19;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2143,228,0 chrXV 820854 . C G 2184 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.75;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2217,243,0 chrXV 821660 . T C 4278.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=13.0180;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.38;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4278,468,0 chrXV 822886 . C T 8540.01 filter AC=2;AF=1.00;AN=2;DP=364;Dels=0.00;FS=0.000;HaplotypeScore=34.0935;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=23.46;SB=-2.744e+03 GT:AD:DP:GQ:PL 1/1:0,363:364:99:8540,922,0 chrXV 822912 . C T 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.862;DP=584;Dels=0.00;FS=20.538;HaplotypeScore=89.2269;MLEAC=1;MLEAF=0.500;MQ=49.14;MQ0=0;MQRankSum=-13.526;QD=0.04;ReadPosRankSum=-11.535;SB=-4.260e+02 GT:AD:DP:GQ:PL 0/1:470,113:584:53:53,0,9009 chrXV 822915 . G T 280.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.345;DP=617;Dels=0.00;FS=23.439;HaplotypeScore=106.8682;MLEAC=1;MLEAF=0.500;MQ=48.08;MQ0=0;MQRankSum=-15.935;QD=0.45;ReadPosRankSum=-11.743;SB=-1.215e+03 GT:AD:DP:GQ:PL 0/1:441,174:617:99:310,0,8975 chrXV 822918 . A T 424.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;DP=647;Dels=0.00;FS=31.784;HaplotypeScore=82.6291;MLEAC=1;MLEAF=0.500;MQ=47.10;MQ0=0;MQRankSum=-17.611;QD=0.66;ReadPosRankSum=-13.294;SB=-1.453e+03 GT:AD:DP:GQ:PL 0/1:424,221:647:99:454,0,8697 chrXV 822921 . A T 485.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;DP=701;Dels=0.00;FS=49.718;HaplotypeScore=85.0354;MLEAC=1;MLEAF=0.500;MQ=45.59;MQ0=0;MQRankSum=-17.157;QD=0.69;ReadPosRankSum=-12.807;SB=-1.830e+03 GT:AD:DP:GQ:PL 0/1:430,267:701:99:515,0,8467 chrXV 822924 . G T 424.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.757;DP=759;Dels=0.00;FS=34.453;HaplotypeScore=49.4037;MLEAC=1;MLEAF=0.500;MQ=44.54;MQ0=0;MQRankSum=-18.166;QD=0.56;ReadPosRankSum=-11.765;SB=-2.238e+03 GT:AD:DP:GQ:PL 0/1:434,313:759:99:454,0,8363 chrXV 822945 . T C 521.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-15.877;DP=888;Dels=0.00;FS=8.515;HaplotypeScore=204.5118;MLEAC=1;MLEAF=0.500;MQ=43.18;MQ0=0;MQRankSum=-1.177;QD=0.59;ReadPosRankSum=-10.500;SB=-1.325e+03 GT:AD:DP:GQ:PL 0/1:658,229:888:99:551,0,7290 chrXV 822954 . T C 1021.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-16.960;DP=926;Dels=0.00;FS=43.703;HaplotypeScore=239.7678;MLEAC=1;MLEAF=0.500;MQ=43.68;MQ0=1;MQRankSum=1.434;QD=1.10;ReadPosRankSum=-7.439;SB=-2.195e+03 GT:AD:DP:GQ:PL 0/1:617,305:926:99:1051,0,6481 chrXV 822978 . T C 4152.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-12.670;DP=933;Dels=0.00;FS=35.116;HaplotypeScore=202.7041;MLEAC=1;MLEAF=0.500;MQ=43.63;MQ0=1;MQRankSum=8.489;QD=4.45;ReadPosRankSum=15.679;SB=-4.100e+03 GT:AD:DP:GQ:PL 0/1:461,470:933:99:4152,0,2867 chrXV 822988 . G T 1081.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.080;DP=764;Dels=0.01;FS=12.959;HaplotypeScore=385.3888;MLEAC=1;MLEAF=0.500;MQ=45.41;MQ0=0;MQRankSum=-10.609;QD=1.41;ReadPosRankSum=-18.659;SB=-2.189e+03 GT:AD:DP:GQ:PL 0/1:470,286:757:99:1111,0,5311 chrXV 823464 . G A 2928 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.18;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2961,327,0 chrXV 823625 . C T 3374.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=25.18;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3374,360,0 chrXV 823983 . A G 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.083;QD=21.45;ReadPosRankSum=1.624;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2778,309,0 chrXV 824171 . C T 3129 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.51;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3162,342,0 chrXV 824472 . A G 2711 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.97;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2744,300,0 chrXV 824518 . G C 2818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=138;Dels=0.00;FS=3.019;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.312;QD=20.42;ReadPosRankSum=2.218;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2851,318,0 chrXV 824520 . A G 2901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=140;Dels=0.00;FS=3.009;HaplotypeScore=5.4592;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=0.500;QD=20.72;ReadPosRankSum=2.256;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2934,321,0 chrXV 824881 . A T 2668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.4589;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.242;QD=23.20;ReadPosRankSum=1.671;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2701,288,0 chrXV 824928 . T C 2296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.687;DP=102;Dels=0.00;FS=5.963;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.667;QD=22.51;ReadPosRankSum=2.869;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:3,97:102:99:2329,252,0 chrXV 825140 . C T 2807 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=24.84;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2840,297,0 chrXV 825198 . G A 3136 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3169,351,0 chrXV 825345 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.97;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3313,363,0 chrXV 825357 . A T 4319.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.97;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4319,477,0 chrXV 825410 . G C 5107.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.00;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,219:222:99:5107,561,0 chrXV 826031 . T C 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.2396;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-1.490;QD=16.70;ReadPosRankSum=1.652;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,129:133:99:2254,264,0 chrXV 826034 . C T 2386 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8842;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.35;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2419,261,0 chrXV 826120 . T C 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.6103;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.060;QD=24.43;ReadPosRankSum=1.655;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3273,366,0 chrXV 827016 . A T 4632.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.5735;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.04;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4632,490,0 chrXV 827048 . A G 4676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.366;DP=204;Dels=0.00;FS=8.804;HaplotypeScore=11.2349;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.654;QD=22.92;ReadPosRankSum=3.340;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:4,200:204:99:4676,510,0 chrXV 827194 . A T 5134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=208;Dels=0.00;FS=4.108;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.228;QD=24.68;ReadPosRankSum=1.682;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:5134,547,0 chrXV 827653 . T A 4397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=195;Dels=0.00;FS=3.456;HaplotypeScore=16.3937;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.187;QD=22.55;ReadPosRankSum=1.679;SB=-2.235e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4397,483,0 chrXV 828529 . T C 4307.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.64;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4307,480,0 chrXV 828571 . C T 3459.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=16.5226;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.48;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3459,381,0 chrXV 828922 . A G 4518.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4518,495,0 chrXV 829039 . A G 4378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=3.158;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.635;QD=24.32;ReadPosRankSum=1.674;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4378,486,0 chrXV 829111 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=149;Dels=0.00;FS=2.898;HaplotypeScore=13.8248;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.008;QD=22.36;ReadPosRankSum=2.417;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3331,369,0 chrXV 829795 . A T 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.982;QD=22.06;ReadPosRankSum=1.655;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3033,333,0 chrXV 829936 . G A 4060.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.47;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4060,441,0 chrXV 830744 . T A 2403 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=24.52;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2436,264,0 chrXV 830783 . C A 1661 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=21.57;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1694,177,0 chrXV 830785 . C T 1544 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.4424;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=20.59;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1577,174,0 chrXV 830808 . G A 954 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=16.17;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:987,108,0 chrXV 830894 . C A 1210 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.62;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1243,138,0 chrXV 831051 . C T 2313 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=25.14;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2346,252,0 chrXV 831116 . G A 3887.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.4468;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3887,429,0 chrXV 832871 . T C 3574.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.51;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3574,399,0 chrXV 833083 . A G 5138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=214;Dels=0.00;FS=4.476;HaplotypeScore=14.1612;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.577;QD=24.01;ReadPosRankSum=1.683;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:5138,561,0 chrXV 834126 . G T 3633.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.5091;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.85;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3633,396,0 chrXV 835786 . C T 4130.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.716;QD=24.58;ReadPosRankSum=-0.197;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4130,444,0 chrXV 837639 . G T 3124 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=25.82;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3157,336,0 chrXV 837895 . G T 3956.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.88;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3956,429,0 chrXV 837957 . C T 4084.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:4084,432,0 chrXV 838118 . A G 3904.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.0198;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.866;QD=22.18;ReadPosRankSum=1.712;SB=-2.075e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3904,435,0 chrXV 839140 . C T 2653 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.07;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2686,285,0 chrXV 841378 . T G 4725.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4725,534,0 chrXV 841912 . G T 3089 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.40;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3122,339,0 chrXV 842011 . G A 2818 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2851,303,0 chrXV 843780 . T C 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.4273;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.550;QD=23.38;ReadPosRankSum=1.680;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:3189,351,0 chrXV 843866 . G A 4185.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=24.62;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4185,436,0 chrXV 843888 . C T 3364.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=20.77;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3364,363,0 chrXV 843892 . A G 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.846;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=0.606;QD=19.61;ReadPosRankSum=1.710;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3190,351,0 chrXV 843925 . G A 2821 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=17.52;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:2854,306,0 chrXV 844220 . A G 4547.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4547,495,0 chrXV 845127 . G A 3584.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.2567;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3584,393,0 chrXV 845796 . A G 4309.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=180;Dels=0.00;FS=6.655;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.525;QD=23.94;ReadPosRankSum=2.422;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:2,176:180:99:4309,471,0 chrXV 847160 . T C 4276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=216;Dels=0.00;FS=9.793;HaplotypeScore=11.5539;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.388;QD=19.80;ReadPosRankSum=2.426;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:2,210:216:99:4276,480,0 chrXV 847385 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.54;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3853,414,0 chrXV 847488 . C G 4385.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.83;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4385,480,0 chrXV 847698 . A G 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.116;DP=159;Dels=0.00;FS=8.992;HaplotypeScore=18.9283;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.987;QD=22.22;ReadPosRankSum=3.404;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:4,154:159:99:3533,393,0 chrXV 848096 . A G 3291.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.4297;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3291,369,0 chrXV 848547 . A G 3953.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.155;QD=24.40;ReadPosRankSum=1.689;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3953,429,0 chrXV 848614 . G A 4119.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.4669;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.54;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4119,441,0 chrXV 850330 . G T 4000.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.6683;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.10;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4000,423,0 chrXV 850531 . A G 3483.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.53;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3483,375,0 chrXV 850811 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.45;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2996,312,0 chrXV 851249 . T A 2692 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=19.37;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2725,300,0 chrXV 851261 . C T 2777 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.04;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2810,300,0 chrXV 851539 . C G 3661.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.92;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3661,414,0 chrXV 852044 . C T 2903 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.99;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2936,318,0 chrXV 852171 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2774,288,0 chrXV 852208 . A G 2496 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2529,273,0 chrXV 852451 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.57;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1797,204,0 chrXV 852538 . C T 2923 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.38;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2956,318,0 chrXV 853137 . C A 3104 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.63;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3137,339,0 chrXV 853587 . C T 3747.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.02;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3747,414,0 chrXV 854319 . T C 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.95;MQ0=1;MQRankSum=0.067;QD=1.13;ReadPosRankSum=1.179;SB=-6.628e-03 GT:AD:DP:GQ:PL 0/1:8,2:10:41:41,0,43 chrXV 854323 . G A 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.95;MQ0=1;MQRankSum=-0.762;QD=1.32;ReadPosRankSum=-0.762;SB=-3.188e-03 GT:AD:DP:GQ:PL 0/1:2,8:10:43:43,0,43 chrXV 854352 . C T 41.09 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=33.86;MQ0=1;MQRankSum=0.742;QD=5.14;ReadPosRankSum=0.742;SB=0.545 GT:AD:DP:GQ:PL 0/1:1,7:8:14:71,0,14 chrXV 854509 . T A 104.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.84;MQ0=7;MQRankSum=0.747;QD=6.95;ReadPosRankSum=-0.747;SB=3.37 GT:AD:DP:GQ:PL 1/1:7,8:15:15:137,15,0 chrXV 854531 . T C 97.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.666;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.85;MQ0=5;MQRankSum=0.762;QD=6.95;ReadPosRankSum=1.666;SB=2.74 GT:AD:DP:GQ:PL 1/1:6,8:14:15:130,15,0 chrXV 854577 . T C 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.07;MQ0=1;MQRankSum=0.731;QD=7.66;ReadPosRankSum=-0.731;SB=2.11 GT:AD:DP:GQ:PL 1/1:1,5:6:9:78,9,0 chrXV 854817 . G A 990 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.71;MQ0=0;QD=23.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1023,108,0 chrXV 854873 . A G 1371 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=1.093;QD=21.09;ReadPosRankSum=1.626;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1404,156,0 chrXV 854955 . T C 855 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:96:888,96,0 chrXV 855177 . C T 2332 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2365,255,0 chrXV 855289 . C T 2888 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.74;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2921,303,0 chrXV 855309 . C T 3043 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.54;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3076,324,0 chrXV 855498 . G A 3666.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=25.11;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3666,390,0 chrXV 855958 . T C 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.7355;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.856;QD=22.32;ReadPosRankSum=1.692;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3884,426,0 chrXV 856254 . G A 5682.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=17.4065;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.82;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5682,618,0 chrXV 856764 . C T 3273.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=15.3478;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.89;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3273,357,0 chrXV 857553 . C T 3482.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.0934;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3482,372,0 chrXV 859316 . G C 3623.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=18.9766;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.17;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3623,402,0 chrXV 859857 . T C 5614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.235;QD=24.41;ReadPosRankSum=1.672;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:5614,624,0 chrXV 859965 . C T 5425.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.7773;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.69;SB=-3.063e+03 GT:AD:DP:GQ:PL 1/1:0,226:229:99:5425,585,0 chrXV 860337 . T A 4001.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.55;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4001,429,0 chrXV 861653 . T C 2790 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.14;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2823,309,0 chrXV 861930 . A G 3585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=3.391;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=1.285;QD=23.13;ReadPosRankSum=1.710;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3585,402,0 chrXV 861942 . A G 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=148;Dels=0.00;FS=6.412;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=0.822;QD=23.03;ReadPosRankSum=2.400;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3408,363,0 chrXV 861988 . G A 2787 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.60;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2820,309,0 chrXV 863103 . T C 2740 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.4328;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.92;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2773,312,0 chrXV 863139 . G A 2969 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.21;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3002,315,0 chrXV 863148 . C T 3129 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=20.06;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3162,336,0 chrXV 863403 . G A 3810.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.11;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3810,411,0 chrXV 863813 . G A 2409 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.39;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2442,261,0 chrXV 863844 . T C 2931 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2964,327,0 chrXV 864477 . A C 5317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.1338;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.299;QD=23.84;ReadPosRankSum=1.701;SB=-2.746e+03 GT:AD:DP:GQ:PL 1/1:1,219:223:99:5317,588,0 chrXV 864723 . G A 5477.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=15.1287;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.24;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5477,583,0 chrXV 866681 . C T 3904.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=22.18;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3904,412,0 chrXV 866776 . G A 3094 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3127,330,0 chrXV 867169 . T G 5920.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=11.2705;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.434;QD=24.07;ReadPosRankSum=1.718;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:1,243:246:99:5920,648,0 chrXV 867347 . C T 4919.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.1487;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=22.46;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4919,523,0 chrXV 867358 . A G 4586.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.1052;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.73;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4586,510,0 chrXV 868000 . A G 1680 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=18.67;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1713,192,0 chrXV 868024 . A G 1489 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.49;MQ0=0;QD=15.04;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1522,171,0 chrXV 868038 . G A 1543 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.88;MQ0=0;QD=15.13;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1576,171,0 chrXV 868053 . T C 1280 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.73;MQ0=0;QD=12.55;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1313,144,0 chrXV 868056 . C G 1146 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=74.1159;MLEAC=2;MLEAF=1.00;MQ=35.64;MQ0=0;QD=12.06;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1179,132,0 chrXV 868096 . T C 1644 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=16.61;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1677,183,0 chrXV 868474 . G A 5277.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=15.1309;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.10;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:5277,559,0 chrXV 868576 . C T 5122.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.1737;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.71;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5122,561,0 chrXV 868630 . T C 5132.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=228;Dels=0.00;FS=9.988;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.084;QD=22.51;ReadPosRankSum=2.934;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:3,224:228:99:5132,576,0 chrXV 868909 . G A 2832 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.12;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2865,306,0 chrXV 869099 . C T 2329 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=21.97;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2362,252,0 chrXV 869133 . G A 2342 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=19.68;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2375,258,0 chrXV 869134 . A C 2304 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=19.04;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2337,258,0 chrXV 869158 . A C 1747 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=15.32;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1780,198,0 chrXV 869174 . T C 1655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=110;Dels=0.00;FS=3.013;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;MQRankSum=-0.399;QD=15.05;ReadPosRankSum=2.381;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:2,106:110:99:1688,186,0 chrXV 869184 . G A 1846 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=16.63;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1879,204,0 chrXV 869373 . G A 2987 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=14.2832;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=21.80;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3020,321,0 chrXV 869434 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.89;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3635,387,0 chrXV 869435 . T C 3508.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.05;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3508,393,0 chrXV 869473 . G A 4275.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.38;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4275,451,0 chrXV 869524 . A G 4345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=193;Dels=0.00;FS=3.033;HaplotypeScore=13.9785;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.672;QD=22.51;ReadPosRankSum=2.411;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:2,190:193:99:4345,486,0 chrXV 869837 . T C 2952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=131;Dels=0.00;FS=7.518;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.482;QD=22.53;ReadPosRankSum=2.412;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2985,324,0 chrXV 870105 . G A 3899.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.83;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:3899,417,0 chrXV 870333 . G A 4531.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.36;SB=-2.435e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4531,492,0 chrXV 870396 . G A 4769.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.85;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4769,510,0 chrXV 870449 . A G 4521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=194;Dels=0.00;FS=3.243;HaplotypeScore=13.5887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.541;QD=23.30;ReadPosRankSum=1.660;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:1,191:194:99:4521,498,0 chrXV 870516 . A G 3693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=15.0395;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.052;QD=21.98;ReadPosRankSum=1.711;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3693,411,0 chrXV 871008 . C A 3411.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.52;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3411,360,0 chrXV 871819 . G A 2695 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.39;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2728,291,0 chrXV 872133 . T C 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=116;Dels=0.00;FS=6.291;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-2.364;QD=23.89;ReadPosRankSum=2.386;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2804,306,0 chrXV 872415 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.3033;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3610,381,0 chrXV 872525 . G A 3835.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4637;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.12;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3835,408,0 chrXV 872836 . A T 4183.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.32;SB=-2.144e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4183,447,0 chrXV 872988 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.267;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.2496;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.546;QD=24.18;ReadPosRankSum=-0.825;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3603,360,0 chrXV 873009 . T C 3648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.219;DP=162;Dels=0.00;FS=3.010;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.043;QD=22.52;ReadPosRankSum=0.813;SB=-2.092e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3648,374,0 chrXV 873546 . C A 2836 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.25;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2869,306,0 chrXV 873804 . G A 2348 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.36;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2381,249,0 chrXV 873866 . T C 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.308;QD=23.89;ReadPosRankSum=1.700;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2589,285,0 chrXV 873900 . G A 3161 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.91;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3194,351,0 chrXV 874238 . G A 2927 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=25.45;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2960,315,0 chrXV 874326 . C A 1888 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=22.75;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1921,210,0 chrXV 874350 . A C 1576 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=93;Dels=0.00;FS=10.854;HaplotypeScore=1.9148;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;MQRankSum=-2.011;QD=16.95;ReadPosRankSum=2.925;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:3,90:93:99:1609,180,0 chrXV 874352 . T C 1507 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=95;Dels=0.00;FS=5.835;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;MQRankSum=-1.096;QD=15.86;ReadPosRankSum=2.862;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1540,174,0 chrXV 874353 . C T 1532 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;QD=16.30;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1565,174,0 chrXV 874388 . A T 1889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=117;Dels=0.00;FS=3.278;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=0.163;QD=16.15;ReadPosRankSum=1.673;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1922,213,0 chrXV 874428 . T C 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.577;QD=22.77;ReadPosRankSum=1.680;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3038,330,0 chrXV 874473 . A G 2752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.943;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.888;QD=23.13;ReadPosRankSum=1.703;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2785,309,0 chrXV 874666 . T C 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=125;Dels=0.00;FS=6.057;HaplotypeScore=10.2773;MLEAC=2;MLEAF=1.00;MQ=60.50;MQ0=0;MQRankSum=1.804;QD=21.50;ReadPosRankSum=2.409;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:2,120:125:99:2721,303,0 chrXV 875004 . T C 2185 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.4820;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=14.66;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2218,249,0 chrXV 875332 . A T 2564 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1725;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.10;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2597,282,0 chrXV 875566 . C A 2233 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=22.33;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2266,240,0 chrXV 875572 . A C 2183 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=20.99;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2216,246,0 chrXV 875585 . G A 2291 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=21.21;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2324,249,0 chrXV 875652 . C T 2633 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.8328;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.76;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2666,294,0 chrXV 875719 . T C 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.0421;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.946;QD=21.48;ReadPosRankSum=1.703;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,118:122:99:2654,291,0 chrXV 875886 . G A 2542 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.90;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2575,282,0 chrXV 876178 . G C 2437 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.89;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2470,270,0 chrXV 876558 . T C 2764 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.42;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2797,312,0 chrXV 876582 . G A 2591 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.34;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2624,291,0 chrXV 876653 . C A 2615 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.37;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,131:135:99:2648,282,0 chrXV 876828 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.28;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2796,297,0 chrXV 877224 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=4.236;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.619;QD=26.36;ReadPosRankSum=1.704;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3249,354,0 chrXV 877263 . G A 2856 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.27;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2889,309,0 chrXV 877812 . C T 3989.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.9443;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.03;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3989,418,0 chrXV 877890 . A G 3654.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=180;Dels=0.00;FS=7.149;HaplotypeScore=12.1793;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-1.173;QD=20.30;ReadPosRankSum=2.422;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:2,175:180:99:3654,411,0 chrXV 877951 . T G 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=201;Dels=0.00;FS=3.030;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-1.283;QD=20.62;ReadPosRankSum=2.388;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4145,450,0 chrXV 877953 . G A 4157.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=20.99;SB=-2.711e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4157,441,0 chrXV 877970 . C T 4374.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=13.9891;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.44;SB=-2.573e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4374,468,0 chrXV 878069 . G A 5597.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.42;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:5597,598,0 chrXV 878115 . C T 4690.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.77;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4690,513,0 chrXV 878273 . T A 4821.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=199;Dels=0.00;FS=10.277;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.279;QD=24.23;ReadPosRankSum=2.388;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4821,508,0 chrXV 878721 . A C 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=0.353;QD=17.97;ReadPosRankSum=1.665;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:1,205:206:99:3701,402,0 chrXV 878725 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=17.57;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3566,396,0 chrXV 878999 . G A 3129 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=20.06;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3162,336,0 chrXV 879013 . A G 3112 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=19.82;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3145,351,0 chrXV 879022 . T C 2975 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=18.71;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3008,333,0 chrXV 879067 . G A 2726 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.2205;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=17.93;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,148:152:99:2759,294,0 chrXV 879097 . T G 2875 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.46;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2908,327,0 chrXV 879127 . A G 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-1.326;QD=19.80;ReadPosRankSum=1.684;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,144:148:99:2963,330,0 chrXV 879175 . A G 2762 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=19.73;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2795,309,0 chrXV 879184 . C A 2790 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=20.22;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2823,300,0 chrXV 879343 . T A 2988 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.6501;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=21.50;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3021,336,0 chrXV 879401 . G A 2905 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=21.52;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2938,309,0 chrXV 879406 . C T 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=3.274;HaplotypeScore=6.5545;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=1.656;QD=19.50;ReadPosRankSum=1.350;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2685,291,0 chrXV 879676 . G A 4412.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.9554;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.22;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4412,477,0 chrXV 880012 . C T 5012.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.6435;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.24;SB=-2.890e+03 GT:AD:DP:GQ:PL 1/1:0,234:236:99:5012,535,0 chrXV 880027 . G A 4928.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.8606;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.10;SB=-2.891e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4928,531,0 chrXV 880210 . C T 4483.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.6533;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.99;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4483,492,0 chrXV 880543 . T C 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=1.175;QD=19.80;ReadPosRankSum=1.701;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2290,252,0 chrXV 880556 . A G 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.671;QD=18.60;ReadPosRankSum=1.670;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2098,231,0 chrXV 880789 . C T 3730.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.02;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3730,408,0 chrXV 880986 . G A 4820.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4820,511,0 chrXV 881033 . A G 4116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.024;QD=22.13;ReadPosRankSum=1.695;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4116,459,0 chrXV 881147 . C T 4671.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4671,495,0 chrXV 881292 . C T 4367.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.26;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4367,463,0 chrXV 881426 . C G 5417.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=20.1600;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.20;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5417,594,0 chrXV 881726 . C T 6349.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=24.5389;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,266:267:99:6349,693,0 chrXV 881960 . T C 10054.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=481;Dels=0.00;FS=0.000;HaplotypeScore=23.2476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.879;QD=20.90;ReadPosRankSum=1.725;SB=-6.160e+03 GT:AD:DP:GQ:PL 1/1:1,478:481:99:10054,1131,0 chrXV 882091 . A G 8753.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=404;Dels=0.00;FS=5.286;HaplotypeScore=25.3563;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.278;QD=21.67;ReadPosRankSum=2.918;SB=-4.044e+03 GT:AD:DP:GQ:PL 1/1:3,401:404:99:8753,963,0 chrXV 882131 . T C 7131.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=357;Dels=0.00;FS=5.116;HaplotypeScore=14.2960;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.654;QD=19.97;ReadPosRankSum=1.673;SB=-2.869e+03 GT:AD:DP:GQ:PL 1/1:1,354:357:99:7131,792,0 chrXV 882294 . A G 4740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=8.4743;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=0.471;QD=18.88;ReadPosRankSum=1.677;SB=-2.693e+03 GT:AD:DP:GQ:PL 1/1:1,249:251:99:4740,528,0 chrXV 882304 . G A 4900.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=9.7726;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=18.70;SB=-2.863e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:4900,540,0 chrXV 882343 . A G 4995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=251;Dels=0.00;FS=3.016;HaplotypeScore=19.3695;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-0.973;QD=19.90;ReadPosRankSum=2.391;SB=-3.215e+03 GT:AD:DP:GQ:PL 1/1:2,249:251:99:4995,549,0 chrXV 882429 . A G 3215 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.5638;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.85;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3248,363,0 chrXV 882544 . G A 2783 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.46;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2816,300,0 chrXV 882644 . C T 132.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.383;DP=81;Dels=0.00;FS=80.019;HaplotypeScore=3.5882;MLEAC=1;MLEAF=0.500;MQ=52.94;MQ0=0;MQRankSum=0.140;QD=1.63;ReadPosRankSum=-5.855;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:48,33:81:99:162,0,265 chrXV 882721 . T C 2406 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2439,270,0 chrXV 882911 . G C 3408.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.4673;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=24.70;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3408,369,0 chrXV 883135 . A G 4321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=204;Dels=0.00;FS=7.147;HaplotypeScore=16.8329;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.599;QD=21.18;ReadPosRankSum=2.425;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:2,200:204:99:4321,480,0 chrXV 883315 . T C 5465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=234;Dels=0.00;FS=2.952;HaplotypeScore=16.8097;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.037;QD=23.35;ReadPosRankSum=2.428;SB=-2.624e+03 GT:AD:DP:GQ:PL 1/1:2,231:234:99:5465,600,0 chrXV 883432 . A G 7885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.790;DP=337;Dels=0.00;FS=12.623;HaplotypeScore=26.8045;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.249;QD=23.40;ReadPosRankSum=4.794;SB=-3.080e+03 GT:AD:DP:GQ:PL 1/1:8,327:337:99:7885,870,0 chrXV 883966 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3742,405,0 chrXV 884113 . C A 3868.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=24.95;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3868,411,0 chrXV 884596 . T C 2850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=151;Dels=0.00;FS=5.942;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=0.260;QD=18.87;ReadPosRankSum=2.620;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:2883,321,0 chrXV 884597 . C T 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=150;Dels=0.00;FS=5.994;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.336;QD=19.70;ReadPosRankSum=2.497;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:2988,327,0 chrXV 884876 . G A 3139 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.01;FS=0.000;HaplotypeScore=4.6229;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.50;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3172,336,0 chrXV 884877 . T C 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=161;Dels=0.01;FS=2.578;HaplotypeScore=6.9889;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=0.289;QD=18.90;ReadPosRankSum=2.906;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:3076,336,0 chrXV 885209 . C T 4282.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=15.3837;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.92;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4282,459,0 chrXV 885299 . T C 3200 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.05;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3233,363,0 chrXV 885669 . A G 3631.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.87;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3631,399,0 chrXV 886907 . G A 3824.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3824,417,0 chrXV 886961 . G A 4537.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.01;FS=0.000;HaplotypeScore=14.5547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.01;SB=-2.307e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4537,484,0 chrXV 887066 . C T 3848.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=163;Dels=0.00;FS=3.780;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.953;QD=23.61;ReadPosRankSum=0.585;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:3848,408,0 chrXV 887399 . C T 2336 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2369,249,0 chrXV 888022 . G A 2775 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.75;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2808,309,0 chrXV 888126 . A G 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=3.009;HaplotypeScore=7.3937;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.187;QD=24.36;ReadPosRankSum=2.396;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3361,372,0 chrXV 888891 . C A 1352 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=16.0189;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=16.29;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1385,150,0 chrXV 889336 . A G 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=163;Dels=0.00;FS=7.324;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.191;QD=23.14;ReadPosRankSum=2.404;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3771,414,0 chrXV 889741 . G A 867 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=14.21;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:900,99,0 chrXV 889988 . A T 3635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=4.682;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.540;QD=25.24;ReadPosRankSum=1.684;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3635,387,0 chrXV 890036 . C G 4045.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.79;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4045,441,0 chrXV 890409 . T C 4301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=187;Dels=0.00;FS=3.580;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.677;QD=23.00;ReadPosRankSum=1.714;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4301,474,0 chrXV 890957 . G A 4509.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.61;SB=-2.155e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4509,478,0 chrXV 891265 . T G 2979 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.2662;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.97;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3012,330,0 chrXV 891275 . G A 3140 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.1036;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.66;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3173,339,0 chrXV 891444 . T C 3762.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.177;DP=165;Dels=0.00;FS=8.108;HaplotypeScore=8.1614;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.523;QD=22.80;ReadPosRankSum=2.404;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:2,160:165:99:3762,411,0 chrXV 891508 . A G 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=140;Dels=0.00;FS=2.934;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.378;QD=24.64;ReadPosRankSum=2.397;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3449,381,0 chrXV 891617 . G A 2558 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2591,279,0 chrXV 891758 . C T 3079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.624;QD=23.87;ReadPosRankSum=-1.039;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,124:129:99:3112,339,0 chrXV 891827 . G C 2342 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=8.9456;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2375,261,0 chrXV 892177 . T C 4022.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=169;Dels=0.00;FS=2.925;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.723;QD=23.80;ReadPosRankSum=2.421;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:4022,441,0 chrXV 892334 . T G 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=178;Dels=0.00;FS=3.210;HaplotypeScore=8.1877;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-1.635;QD=22.13;ReadPosRankSum=1.713;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3939,432,0 chrXV 892457 . T A 2076 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.02;FS=0.000;HaplotypeScore=32.4398;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.85;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2109,228,0 chrXV 892603 . C T 1951 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=19.13;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1984,219,0 chrXV 892736 . C T 2473 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;QD=24.98;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2506,267,0 chrXV 892829 . A C 2971 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.77;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3004,333,0 chrXV 892863 . A G 3051 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.11;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3084,348,0 chrXV 893238 . T C 3019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=134;Dels=0.00;FS=6.389;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;MQRankSum=1.673;QD=22.53;ReadPosRankSum=2.413;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3052,342,0 chrXV 893595 . C T 2871 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.75;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2904,306,0 chrXV 893597 . T G 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-1.088;QD=20.24;ReadPosRankSum=1.705;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2685,300,0 chrXV 893796 . T A 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=141;Dels=0.00;FS=7.052;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-0.911;QD=21.70;ReadPosRankSum=2.397;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3093,330,0 chrXV 893919 . G A 3487.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3487,372,0 chrXV 894517 . C T 2605 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.35;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2638,291,0 chrXV 894566 . T G 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=3.702;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.383;QD=23.17;ReadPosRankSum=1.705;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:3045,339,0 chrXV 894632 . C G 2763 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4459;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.03;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2796,306,0 chrXV 895062 . G A 3781.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.2624;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.24;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3781,399,0 chrXV 895152 . T C 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=151;Dels=0.00;FS=2.990;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-1.270;QD=19.83;ReadPosRankSum=2.400;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3028,330,0 chrXV 895158 . G A 3315.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.3455;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.09;SB=-2.139e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:3315,363,0 chrXV 895667 . C T 2853 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.78;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2886,321,0 chrXV 895706 . T G 2742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=136;Dels=0.00;FS=3.854;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.739;QD=20.16;ReadPosRankSum=1.630;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2775,306,0 chrXV 896048 . C T 4420.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.44;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4420,466,0 chrXV 896084 . T C 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=204;Dels=0.00;FS=4.231;HaplotypeScore=16.5298;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.698;QD=19.52;ReadPosRankSum=1.715;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:3983,441,0 chrXV 896125 . G A 3862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=20.7963;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.632;QD=20.11;ReadPosRankSum=1.494;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:1,188:192:99:3862,417,0 chrXV 896376 . C G 2263 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.76;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2296,258,0 chrXV 896443 . G A 1863 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.58;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1896,204,0 chrXV 896888 . C T 3762.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3762,402,0 chrXV 896924 . G T 3556.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.6388;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3556,381,0 chrXV 897076 . C T 5208.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.34;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5208,564,0 chrXV 897596 . A G 4485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=183;Dels=0.00;FS=6.385;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.866;QD=24.51;ReadPosRankSum=2.396;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:4485,495,0 chrXV 897851 . C T 3561.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.6683;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.27;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3561,387,0 chrXV 898459 . G A 1810 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=11.9672;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.29;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1843,201,0 chrXV 898703 . A C 3041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.7359;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.197;QD=22.20;ReadPosRankSum=1.681;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:3074,348,0 chrXV 898841 . T C 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=145;Dels=0.00;FS=3.388;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.577;QD=23.92;ReadPosRankSum=1.708;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3469,387,0 chrXV 898990 . C A 3501.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.50;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3501,378,0 chrXV 899008 . A G 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=3.178;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=0.263;QD=21.55;ReadPosRankSum=1.710;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3427,378,0 chrXV 899059 . T C 3568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.685;DP=167;Dels=0.00;FS=7.950;HaplotypeScore=8.0932;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.444;QD=21.37;ReadPosRankSum=3.694;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:5,161:167:99:3568,399,0 chrXV 899349 . C A 4048.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.87;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4048,429,0 chrXV 899752 . C T 4200.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.71;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4200,453,0 chrXV 899806 . T A 4534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.5458;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.146;QD=23.02;ReadPosRankSum=1.697;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4534,495,0 chrXV 900929 . T C 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-1.443;QD=22.63;ReadPosRankSum=2.372;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2930,324,0 chrXV 900947 . T C 2784 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.25;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2817,312,0 chrXV 900970 . C A 2515 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=18.63;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2548,279,0 chrXV 900974 . A G 2592 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=19.20;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2625,291,0 chrXV 901125 . T C 3004 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3482;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.58;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3037,342,0 chrXV 901517 . G A 3004 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3037,324,0 chrXV 901570 . A C 2394 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2427,267,0 chrXV 901621 . C T 2131 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=20.69;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2164,246,0 chrXV 902182 . T C 3941.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=171;Dels=0.00;FS=2.864;HaplotypeScore=14.3467;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.088;QD=23.05;ReadPosRankSum=2.421;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:3941,435,0 chrXV 902767 . T C 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.379;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.270;QD=21.57;ReadPosRankSum=1.655;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,134:136:99:2966,330,0 chrXV 902817 . A T 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.0349;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.092;QD=21.98;ReadPosRankSum=1.709;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3341,369,0 chrXV 902953 . A G 3427.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.80;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3427,378,0 chrXV 903002 . A G 3798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=155;Dels=0.00;FS=3.391;HaplotypeScore=10.5170;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=1.218;QD=24.50;ReadPosRankSum=1.710;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3798,417,0 chrXV 903164 . A G 2971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.334;DP=136;Dels=0.00;FS=17.255;HaplotypeScore=3.5884;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.079;QD=21.85;ReadPosRankSum=4.442;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:7,129:136:99:3004,321,0 chrXV 903193 . G A 2821 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.5884;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=21.87;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2854,303,0 chrXV 903220 . T C 2552 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.09;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2585,285,0 chrXV 903319 . T C 2939 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.6137;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.96;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2972,327,0 chrXV 903503 . A T 3521.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.62;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3521,381,0 chrXV 903530 . A G 2951 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.05;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2984,327,0 chrXV 903669 . A G 2937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=1;MQRankSum=0.495;QD=18.95;ReadPosRankSum=1.710;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:2970,324,0 chrXV 903843 . T G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;MQRankSum=-0.545;QD=18.06;ReadPosRankSum=0.272;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3268,363,0 chrXV 903846 . C T 3409.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=19.04;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,174:179:99:3409,360,0 chrXV 903919 . G T 2589 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=21.40;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2622,279,0 chrXV 904192 . G A 1797 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=13.4520;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=17.11;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1830,195,0 chrXV 904342 . T C 2485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.9892;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.039;QD=20.37;ReadPosRankSum=1.674;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2518,282,0 chrXV 904817 . A G 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.406;DP=130;Dels=0.00;FS=4.170;HaplotypeScore=13.9945;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.245;QD=23.15;ReadPosRankSum=1.624;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,127:130:99:3042,336,0 chrXV 904872 . G C 2827 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.80;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,120:124:99:2860,315,0 chrXV 904900 . C T 2922 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.49;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2955,324,0 chrXV 905332 . A T 3626.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.92;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3626,393,0 chrXV 905341 . G A 3687.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.71;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3687,399,0 chrXV 905380 . A G 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.712;DP=194;Dels=0.00;FS=16.215;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=0.863;QD=18.55;ReadPosRankSum=3.777;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:5,189:194:99:3598,393,0 chrXV 905482 . C T 3490.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.23;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3490,372,0 chrXV 905729 . A G 2293 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.26;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2326,249,0 chrXV 905751 . G A 2136 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.15;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2169,231,0 chrXV 905801 . C T 1551 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=10.5391;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.83;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1584,168,0 chrXV 905895 . G A 1962 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=11.9307;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.80;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1995,210,0 chrXV 906511 . G T 2937 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0534;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.28;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2970,324,0 chrXV 907000 . T C 7369.01 PASS AC=2;AF=1.00;AN=2;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=17.5861;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.96;SB=-3.416e+03 GT:AD:DP:GQ:PL 1/1:0,319:321:99:7369,822,0 chrXV 907492 . C G 2783 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2816,315,0 chrXV 907705 . T C 2848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.430;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.7451;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.017;QD=22.43;ReadPosRankSum=1.705;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2881,312,0 chrXV 907892 . C T 2915 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.7032;MLEAC=2;MLEAF=1.00;MQ=60.64;MQ0=0;QD=24.91;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2948,318,0 chrXV 908374 . G T 1635 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7762;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.03;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1668,177,0 chrXV 908565 . G A 3110 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.88;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:3143,327,0 chrXV 908634 . A G 3781.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=10.9892;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.63;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3781,411,0 chrXV 908860 . T A 5065.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=14.4314;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.67;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5065,541,0 chrXV 909035 . C T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.21;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3335,354,0 chrXV 909219 . C T 2939 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=22.78;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2972,318,0 chrXV 910022 . G A 6911.01 PASS AC=2;AF=1.00;AN=2;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=13.5220;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-3.031e+03 GT:AD:DP:GQ:PL 1/1:0,273:274:99:6911,724,0 chrXV 910701 . T G 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.218;QD=21.44;ReadPosRankSum=1.670;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3580,396,0 chrXV 911595 . T C 1315 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=20.23;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1348,147,0 chrXV 911862 . G A 3560.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=27.38;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3560,373,0 chrXV 911894 . T C 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.490;QD=21.99;ReadPosRankSum=2.330;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2738,300,0 chrXV 911906 . T C 2632 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.72;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2665,291,0 chrXV 911963 . A G 2589 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=18.90;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2622,282,0 chrXV 912582 . T C 2284 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.79;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2317,255,0 chrXV 912636 . C T 2721 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.16;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2754,294,0 chrXV 912729 . C T 3178 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.72;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3211,345,0 chrXV 912839 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.97;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3668,387,0 chrXV 913133 . T A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.18;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3458,378,0 chrXV 913164 . C G 3063 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.04;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3096,354,0 chrXV 914264 . T C 3328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.785;QD=23.94;ReadPosRankSum=1.707;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3328,375,0 chrXV 914282 . C T 3143 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.29;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3176,342,0 chrXV 914306 . T C 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=2.979;HaplotypeScore=4.7778;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=0.661;QD=21.07;ReadPosRankSum=2.409;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2583,282,0 chrXV 914376 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2694,294,0 chrXV 914651 . A G 4668.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.22;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,198:201:99:4668,522,0 chrXV 915217 . T C 3737.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=4.667;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-0.042;QD=22.79;ReadPosRankSum=1.711;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3737,408,0 chrXV 915310 . C G 3412.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.9331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3412,372,0 chrXV 915402 . T A 2687 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=21.16;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2720,291,0 chrXV 915406 . T C 2635 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=20.75;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2668,294,0 chrXV 915416 . A G 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.385;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.326;QD=20.49;ReadPosRankSum=1.706;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,132:135:99:2799,303,0 chrXV 915553 . A C 3328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.497;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.050;QD=24.84;ReadPosRankSum=1.653;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:3328,366,0 chrXV 915687 . T C 4017.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=171;Dels=0.00;FS=5.258;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.293;QD=23.49;ReadPosRankSum=3.336;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:4,166:171:99:4017,438,0 chrXV 915759 . G A 4185.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.4926;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.25;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4185,459,0 chrXV 915853 . T C 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=167;Dels=0.00;FS=3.251;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=1.151;QD=24.06;ReadPosRankSum=1.649;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4018,441,0 chrXV 915979 . G T 4412.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=17.4317;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.22;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4412,474,0 chrXV 916053 . C T 3845.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=19.23;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3845,423,0 chrXV 916056 . C T 3657.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=18.75;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:3657,399,0 chrXV 916094 . C G 2962 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=17.84;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:2995,330,0 chrXV 916139 . A T 4353.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.79;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4353,471,0 chrXV 916804 . A G 5103.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.8655;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.370;QD=23.20;ReadPosRankSum=1.716;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:5103,567,0 chrXV 916839 . G A 5249.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.1578;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.87;SB=-2.239e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5249,588,0 chrXV 917052 . T A 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.155;DP=152;Dels=0.00;FS=6.529;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.762;QD=19.40;ReadPosRankSum=2.400;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2982,324,0 chrXV 917139 . A G 4651.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.73;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4651,516,0 chrXV 917835 . G A 5365.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,221:221:99:5365,582,0 chrXV 918228 . T A 4040.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=3.217;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.866;QD=23.49;ReadPosRankSum=1.672;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4040,426,0 chrXV 918499 . G A 2663 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.38;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2696,297,0 chrXV 919242 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4060,450,0 chrXV 919734 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=3.435;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-0.398;QD=21.45;ReadPosRankSum=1.689;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3496,381,0 chrXV 919749 . A G 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=163;Dels=0.00;FS=6.266;HaplotypeScore=3.9553;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-0.599;QD=19.76;ReadPosRankSum=2.283;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3254,363,0 chrXV 919989 . T C 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=146;Dels=0.00;FS=3.035;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.992;QD=21.27;ReadPosRankSum=2.399;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:2,143:146:99:3139,354,0 chrXV 920281 . G A 3505.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8689;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.50;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3505,378,0 chrXV 920571 . T C 4715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=199;Dels=0.00;FS=2.695;HaplotypeScore=9.1152;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.825;QD=23.69;ReadPosRankSum=2.425;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4715,516,0 chrXV 920814 . A C 4650.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.8881;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4650,519,0 chrXV 920857 . G A 4992.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=8.9874;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.22;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:0,211:215:99:4992,535,0 chrXV 921242 . C A 3946.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3946,420,0 chrXV 921360 . G C 2657 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=15.1354;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.92;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2690,300,0 chrXV 921890 . A G 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=145;Dels=0.00;FS=3.660;HaplotypeScore=11.6925;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.577;QD=22.63;ReadPosRankSum=1.660;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3282,360,0 chrXV 922090 . C T 3432.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.6744;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.58;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3432,360,0 chrXV 922097 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.2908;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-0.549;QD=19.94;ReadPosRankSum=1.711;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3270,357,0 chrXV 922957 . C T 1461 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.6830;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.58;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1494,162,0 chrXV 923125 . T A 49.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.800;DP=14;Dels=0.00;FS=2.963;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;MQRankSum=1.467;QD=3.57;ReadPosRankSum=0.267;SB=-5.297e+01 GT:AD:DP:GQ:PL 1/1:5,9:14:9:82,9,0 chrXV 923126 . G T 48.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.793;DP=14;Dels=0.00;FS=3.282;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;MQRankSum=1.788;QD=3.50;ReadPosRankSum=1.134;SB=-2.597e+01 GT:AD:DP:GQ:PL 1/1:5,7:14:9:81,9,0 chrXV 923153 . A G 406 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.33;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,20:21:51:439,51,0 chrXV 923184 . T G 978 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=19.18;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1011,111,0 chrXV 923194 . C G 982 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.88;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1015,111,0 chrXV 923424 . T C 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.643;QD=23.03;ReadPosRankSum=1.710;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3615,393,0 chrXV 923567 . T C 3812.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.53;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3812,417,0 chrXV 923937 . T A 5592.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=12.7935;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.42;SB=-2.886e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5592,589,0 chrXV 924048 . G A 5280.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.78;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5280,562,0 chrXV 924306 . C T 4099.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=195;Dels=0.00;FS=3.369;HaplotypeScore=19.9481;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.412;QD=21.02;ReadPosRankSum=1.054;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:1,188:195:99:4099,435,0 chrXV 924397 . T C 4692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=188;Dels=0.00;FS=5.695;HaplotypeScore=9.6744;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.833;QD=24.96;ReadPosRankSum=2.941;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:3,184:188:99:4692,510,0 chrXV 924786 . T A 5958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=252;Dels=0.00;FS=8.320;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.706;QD=23.64;ReadPosRankSum=2.411;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:2,250:252:99:5958,648,0 chrXV 924831 . T C 5592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=245;Dels=0.00;FS=9.193;HaplotypeScore=14.7488;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.776;QD=22.82;ReadPosRankSum=2.399;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:2,242:245:99:5592,612,0 chrXV 925008 . G A 2697 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=21.75;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2730,294,0 chrXV 925193 . G C 1880 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,87:91:99:1913,210,0 chrXV 925499 . T A 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.768;QD=22.17;ReadPosRankSum=1.642;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2583,270,0 chrXV 925525 . C T 2411 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.15;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2444,261,0 chrXV 925556 . C T 2750 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.32;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2783,303,0 chrXV 925933 . A G 4337.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=201;Dels=0.00;FS=3.329;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.172;QD=21.58;ReadPosRankSum=1.662;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:1,197:201:99:4337,489,0 chrXV 926126 . C T 4725.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=14.5502;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.83;SB=-2.643e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4725,499,0 chrXV 926683 . G A 3835.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.01;FS=0.000;HaplotypeScore=14.5223;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.07;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3835,417,0 chrXV 926815 . G C 4074.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.8476;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.30;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:4074,444,0 chrXV 926881 . G A 3948.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=15.0530;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.78;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3948,420,0 chrXV 926925 . G A 3490.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.5674;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.58;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3490,372,0 chrXV 928129 . G A 4244.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=16.0746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4244,453,0 chrXV 928162 . G A 4287.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.08;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4287,468,0 chrXV 928405 . G A 4222.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.1027;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.40;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4222,445,0 chrXV 928450 . C T 3147 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3180,339,0 chrXV 928483 . G A 2925 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2958,309,0 chrXV 928570 . G A 3181 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.66;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3214,354,0 chrXV 928579 . T C 3517.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.2702;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=21.19;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3517,387,0 chrXV 928755 . A G 2938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=128;Dels=0.00;FS=6.630;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.908;QD=22.95;ReadPosRankSum=2.391;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:2,124:128:99:2971,327,0 chrXV 929121 . C T 4075.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4075,435,0 chrXV 929509 . G A 3034 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3067,336,0 chrXV 929593 . C T 3730.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.0024;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.91;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3730,411,0 chrXV 929887 . T C 4967.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=207;Dels=0.00;FS=2.829;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.789;QD=24.00;ReadPosRankSum=0.718;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4967,555,0 chrXV 929923 . A G 4356.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4356,480,0 chrXV 930026 . T C 5163.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.3342;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.68;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:5163,564,0 chrXV 930118 . A G 4499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.760;DP=197;Dels=0.00;FS=6.011;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.321;QD=22.84;ReadPosRankSum=2.934;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:3,194:197:99:4499,504,0 chrXV 930310 . T C 3656.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.99;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3656,408,0 chrXV 930787 . C T 2241 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.94;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2274,246,0 chrXV 930799 . A G 2181 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.13;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,110:114:99:2214,243,0 chrXV 931409 . C G 2948 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.3579;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.21;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2981,324,0 chrXV 931516 . A G 2859 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.87;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2892,324,0 chrXV 931550 . A C 2639 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.15;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2672,297,0 chrXV 931616 . T C 2335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=118;Dels=0.00;FS=10.342;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=0.174;QD=19.79;ReadPosRankSum=2.940;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:3,114:118:99:2368,255,0 chrXV 931623 . A G 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=3.011;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=1.910;QD=19.70;ReadPosRankSum=2.330;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2456,276,0 chrXV 931662 . G A 2383 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=17.27;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2416,255,0 chrXV 931681 . T C 146.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-5.226;DP=142;Dels=0.00;FS=1.047;HaplotypeScore=130.7661;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;MQRankSum=-3.955;QD=1.03;ReadPosRankSum=-5.647;SB=-2.306e+01 GT:AD:DP:GQ:PL 1/1:126,15:142:21:179,21,0 chrXV 932032 . T C 4377.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=14.0158;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=19.37;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4377,489,0 chrXV 932327 . C T 3374.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3374,360,0 chrXV 932424 . C T 3009 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3042,324,0 chrXV 932744 . C T 5857.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=239;Dels=0.00;FS=3.835;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=0.987;QD=24.51;ReadPosRankSum=1.264;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:1,238:239:99:5857,613,0 chrXV 932891 . C G 4533.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=17.1868;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.11;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4533,510,0 chrXV 932930 . T C 3209.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=178;Dels=0.00;FS=3.597;HaplotypeScore=11.4279;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=0.677;QD=18.03;ReadPosRankSum=1.613;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,174:178:99:3243,354,0 chrXV 932950 . C T 2987 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=17.17;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3020,321,0 chrXV 933245 . G A 3420.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.3365;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=22.21;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3420,366,0 chrXV 933254 . G A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=21.83;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3318,366,0 chrXV 933398 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=140;Dels=0.00;FS=3.169;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.461;QD=23.06;ReadPosRankSum=1.707;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3262,360,0 chrXV 933425 . T C 3011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=133;Dels=0.00;FS=3.037;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-0.361;QD=22.64;ReadPosRankSum=2.376;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3044,336,0 chrXV 933470 . C A 2758 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=19.02;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2791,306,0 chrXV 933473 . G A 2742 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=18.53;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2775,303,0 chrXV 933555 . C T 2365 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=18.05;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2398,252,0 chrXV 933560 . C T 2246 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=17.69;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2279,249,0 chrXV 933602 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.7545;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.10;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2151,231,0 chrXV 933812 . G A 2834 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.3322;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.62;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,116:120:99:2867,309,0 chrXV 933920 . A G 2418 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2451,282,0 chrXV 934022 . C T 2698 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2731,288,0 chrXV 934060 . T C 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.8133;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.141;QD=22.04;ReadPosRankSum=1.704;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2766,303,0 chrXV 934286 . T C 3823.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.75;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3823,417,0 chrXV 934518 . A C 4233.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=20.6407;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.55;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,204:206:99:4233,471,0 chrXV 934730 . C T 5776.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.87;SB=-2.657e+03 GT:AD:DP:GQ:PL 1/1:0,242:242:99:5776,639,0 chrXV 935126 . G A 4205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.261;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.7921;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.979;QD=22.73;ReadPosRankSum=-0.960;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4205,428,0 chrXV 935276 . T C 4322.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=187;Dels=0.00;FS=2.847;HaplotypeScore=18.6327;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-0.493;QD=23.11;ReadPosRankSum=2.397;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:4322,477,0 chrXV 935480 . G C 3970.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=21.46;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3970,438,0 chrXV 935498 . G A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=18.40;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3662,390,0 chrXV 935504 . C T 3534.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=18.50;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:3534,381,0 chrXV 935702 . G A 3369.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.31;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3369,372,0 chrXV 936401 . C T 3120 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.9517;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.22;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3153,348,0 chrXV 936506 . T C 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=127;Dels=0.00;FS=3.046;HaplotypeScore=11.7095;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.180;QD=22.28;ReadPosRankSum=2.410;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:2,123:127:99:2862,318,0 chrXV 936606 . A G 3626.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=150;Dels=0.00;FS=4.023;HaplotypeScore=10.0637;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.662;QD=24.17;ReadPosRankSum=1.639;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3626,399,0 chrXV 936652 . A C 3986.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.871;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.3249;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.543;QD=23.31;ReadPosRankSum=1.240;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3986,427,0 chrXV 937658 . C G 5177.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.53;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5177,567,0 chrXV 937693 . G A 4496.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.66;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4496,472,0 chrXV 937769 . T C 4265.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=196;Dels=0.00;FS=3.628;HaplotypeScore=15.2942;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.707;QD=21.76;ReadPosRankSum=1.644;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4265,471,0 chrXV 937997 . G T 3939.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.47;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3939,417,0 chrXV 938096 . T A 3464.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3464,366,0 chrXV 938134 . G T 3517.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3517,375,0 chrXV 938201 . C T 3881.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=25.04;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3881,420,0 chrXV 938464 . T C 3591.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.17;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3591,402,0 chrXV 938476 . A G 3823.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.72;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3823,420,0 chrXV 938764 . A G 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=145;Dels=0.00;FS=2.714;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.213;QD=23.30;ReadPosRankSum=2.415;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:3378,375,0 chrXV 939543 . A C 1066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-1.718;QD=19.74;ReadPosRankSum=2.359;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1099,126,0 chrXV 939553 . A T 913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.818;DP=47;Dels=0.00;FS=2.864;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.817;QD=19.43;ReadPosRankSum=2.187;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:2,45:47:99:946,102,0 chrXV 939870 . C T 2711 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2744,294,0 chrXV 940002 . T C 3159 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.93;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3192,351,0 chrXV 940023 . C T 3120 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.46;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3153,345,0 chrXV 940429 . T C 4056.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.45;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4056,450,0 chrXV 940454 . A G 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=176;Dels=0.00;FS=4.326;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.673;QD=23.01;ReadPosRankSum=1.673;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4049,435,0 chrXV 940838 . G A 2434 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3204;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.54;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2467,264,0 chrXV 941220 . A G 4031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=167;Dels=0.00;FS=4.466;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.619;QD=24.14;ReadPosRankSum=1.711;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:4031,444,0 chrXV 941405 . C T 4052.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.39;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4052,438,0 chrXV 941517 . G A 3483.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=25.61;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3483,372,0 chrXV 941539 . C T 3113 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=23.58;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3146,333,0 chrXV 941546 . C T 2981 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=23.29;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3014,321,0 chrXV 941592 . C A 2683 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.64;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2716,291,0 chrXV 941694 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=21.74;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3011,333,0 chrXV 941706 . C G 2728 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=19.21;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2761,309,0 chrXV 941715 . G A 2506 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=16.82;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2539,282,0 chrXV 941765 . G T 1676 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=13.30;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1709,183,0 chrXV 941767 . G A 1632 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=12.95;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1665,183,0 chrXV 941769 . T C 1634 SnpCluster AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=40.34;MQ0=0;QD=12.87;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1667,183,0 chrXV 941796 . G A 2308 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=16.37;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2341,255,0 chrXV 941898 . C T 3976.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=23.25;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3976,418,0 chrXV 942087 . G A 3272.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.71;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3272,348,0 chrXV 942165 . C T 3423.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3423,363,0 chrXV 942317 . C T 3858.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3858,420,0 chrXV 942594 . T C 5699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=241;Dels=0.00;FS=2.500;HaplotypeScore=15.7076;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=2.271;QD=23.65;ReadPosRankSum=2.963;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:3,238:241:99:5699,621,0 chrXV 942722 . T C 5937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=264;Dels=0.00;FS=4.963;HaplotypeScore=18.7075;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.369;QD=22.49;ReadPosRankSum=3.428;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:4,258:264:99:5937,657,0 chrXV 942759 . T C 7254.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.391;QD=22.96;ReadPosRankSum=1.699;SB=-3.108e+03 GT:AD:DP:GQ:PL 1/1:1,314:316:99:7254,807,0 chrXV 943167 . A C 4709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=19.1496;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.513;QD=21.80;ReadPosRankSum=1.716;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:1,215:216:99:4709,513,0 chrXV 943283 . T C 4082.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.323;DP=179;Dels=0.00;FS=8.822;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.503;QD=22.80;ReadPosRankSum=3.381;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:4,175:179:99:4082,447,0 chrXV 943688 . C T 6243.01 PASS AC=2;AF=1.00;AN=2;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=16.3087;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=19.82;SB=-4.256e+03 GT:AD:DP:GQ:PL 1/1:0,313:315:99:6243,661,0 chrXV 944039 . A T 5558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=241;Dels=0.00;FS=3.395;HaplotypeScore=20.8691;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.132;QD=23.06;ReadPosRankSum=1.703;SB=-2.830e+03 GT:AD:DP:GQ:PL 1/1:1,239:241:99:5558,589,0 chrXV 944430 . T C 2477 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.8710;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.91;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2510,273,0 chrXV 944698 . A T 4817.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.97;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4817,508,0 chrXV 944861 . C G 3679.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.4801;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.30;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3679,405,0 chrXV 945000 . C T 4361.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.9315;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4361,477,0 chrXV 945252 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3407,363,0 chrXV 945621 . G A 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.787;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=0.360;QD=20.75;ReadPosRankSum=1.012;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3228,324,0 chrXV 945624 . T C 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=152;Dels=0.00;FS=6.779;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=-0.696;QD=18.93;ReadPosRankSum=2.400;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:2910,330,0 chrXV 945647 . C T 2693 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.7469;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.40;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2726,297,0 chrXV 945918 . G A 2744 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.31;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2777,300,0 chrXV 946490 . A C 4647.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.357;DP=251;Dels=0.00;FS=5.222;HaplotypeScore=15.0784;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.392;QD=18.51;ReadPosRankSum=3.322;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:4,247:251:99:4647,516,0 chrXV 946808 . C T 2859 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=16.72;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:2892,318,0 chrXV 946810 . G C 2881 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.2962;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=16.75;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:2914,318,0 chrXV 947100 . G A 3583.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.72;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3583,387,0 chrXV 947280 . C T 2458 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2491,270,0 chrXV 947355 . G A 4278.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.4063;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.90;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4278,459,0 chrXV 947892 . A G 3467.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=161;Dels=0.00;FS=2.581;HaplotypeScore=9.9651;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.654;QD=21.53;ReadPosRankSum=2.956;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:3,157:161:99:3467,381,0 chrXV 948120 . G A 4378.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4378,486,0 chrXV 948744 . T G 3869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.798;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.1111;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.311;QD=21.74;ReadPosRankSum=0.331;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3869,423,0 chrXV 948819 . A G 3457.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=156;Dels=0.00;FS=2.810;HaplotypeScore=13.7582;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.008;QD=22.16;ReadPosRankSum=2.387;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3457,372,0 chrXV 949179 . C A 3144 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=12.4642;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.29;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3177,336,0 chrXV 949446 . T C 62.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=156.7170;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=0.584;QD=0.36;ReadPosRankSum=1.692;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:12:95,12,0 chrXV 949506 . T C 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=1.116;QD=21.48;ReadPosRankSum=1.636;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3910,426,0 chrXV 949570 . C G 4639.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.2694;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.79;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4639,507,0 chrXV 949678 . T C 5300.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=-0.460;QD=22.18;ReadPosRankSum=1.674;SB=-2.899e+03 GT:AD:DP:GQ:PL 1/1:1,236:239:99:5300,582,0 chrXV 949682 . A G 5105.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=233;Dels=0.00;FS=3.260;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=-0.364;QD=21.91;ReadPosRankSum=1.687;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:1,232:233:99:5105,567,0 chrXV 949686 . T C 4965.01 SnpCluster AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=21.04;SB=-2.816e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:4965,552,0 chrXV 950054 . T G 4802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=205;Dels=0.00;FS=3.252;HaplotypeScore=14.5683;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.698;QD=23.42;ReadPosRankSum=1.698;SB=-2.547e+03 GT:AD:DP:GQ:PL 1/1:1,202:205:99:4802,525,0 chrXV 950129 . C T 4228.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.25;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4228,450,0 chrXV 950144 . T A 3977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=181;Dels=0.00;FS=4.268;HaplotypeScore=7.4523;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=1.500;QD=21.97;ReadPosRankSum=1.713;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3977,423,0 chrXV 950420 . T C 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=127;Dels=0.00;FS=3.045;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-0.962;QD=18.65;ReadPosRankSum=2.370;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:2,123:127:99:2401,264,0 chrXV 950429 . T A 2622 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=20.65;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2655,282,0 chrXV 950622 . T G 2845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=121;Dels=0.00;FS=2.987;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.871;QD=23.51;ReadPosRankSum=2.409;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2878,315,0 chrXV 950741 . T C 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.408;QD=22.75;ReadPosRankSum=1.682;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:1,138:142:99:3263,372,0 chrXV 950765 . C T 3152 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.18;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3185,345,0 chrXV 950909 . G A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.94;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3378,357,0 chrXV 950916 . A G 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-1.662;QD=20.77;ReadPosRankSum=1.709;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3127,354,0 chrXV 951044 . T C 3010 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.52;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3043,342,0 chrXV 951548 . A G 3163 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.26;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3196,348,0 chrXV 951742 . G C 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DP=171;Dels=0.00;FS=3.471;HaplotypeScore=7.1903;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.912;QD=20.50;ReadPosRankSum=1.363;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3506,378,0 chrXV 951746 . C T 3718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=3.509;HaplotypeScore=7.9790;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.861;QD=21.13;ReadPosRankSum=1.594;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3718,393,0 chrXV 951869 . C A 3018 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.7056;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.56;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3051,333,0 chrXV 951987 . G A 3643.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.0934;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=24.78;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3643,387,0 chrXV 952140 . G A 3027 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.02;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3060,324,0 chrXV 952413 . T C 2700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.801;QD=22.50;ReadPosRankSum=1.674;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2733,300,0 chrXV 952533 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.32;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2715,294,0 chrXV 952628 . A G 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-0.622;QD=23.60;ReadPosRankSum=1.705;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3077,336,0 chrXV 952654 . A G 2604 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.84;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2637,291,0 chrXV 952737 . A G 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=128;Dels=0.00;FS=3.012;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.629;QD=23.51;ReadPosRankSum=2.353;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:3042,333,0 chrXV 953577 . T C 2779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=115;Dels=0.00;FS=5.913;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.044;QD=24.17;ReadPosRankSum=2.851;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2812,306,0 chrXV 953725 . T A 2669 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.83;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2702,282,0 chrXV 953899 . C T 2672 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.44;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2705,291,0 chrXV 954013 . G A 1504 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.14;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1537,162,0 chrXV 954038 . T C 1750 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3984;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.83;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1783,195,0 chrXV 954231 . A T 2098 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.1420;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.31;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2131,234,0 chrXV 954310 . G A 2629 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.47;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2662,282,0 chrXV 954766 . A G 4228.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=4.210;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.896;QD=24.16;ReadPosRankSum=1.712;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4228,480,0 chrXV 954866 . G C 2564 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.85;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2597,285,0 chrXV 955063 . G A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.9858;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.68;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3577,405,0 chrXV 955118 . G A 3581.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.7219;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.25;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3581,384,0 chrXV 955573 . T C 3858.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.1663;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.26;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3858,429,0 chrXV 956028 . G A 3535.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.89;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3535,375,0 chrXV 956137 . C T 2965 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2998,327,0 chrXV 956617 . A G 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.933;QD=22.21;ReadPosRankSum=1.408;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:3054,342,0 chrXV 956880 . G C 2732 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2765,306,0 chrXV 957207 . G A 3888.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.47;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3888,406,0 chrXV 957460 . A G 3583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=3.889;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.366;QD=25.06;ReadPosRankSum=1.635;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3583,381,0 chrXV 957501 . G A 3194 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:3227,360,0 chrXV 958088 . A C 3417.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.9692;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.756;QD=22.93;ReadPosRankSum=1.709;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3417,378,0 chrXV 958154 . T C 2319 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.52;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2352,267,0 chrXV 958310 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.99;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2386,264,0 chrXV 958333 . C T 2313 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.03;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2346,249,0 chrXV 958545 . A G 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=162;Dels=0.00;FS=3.035;HaplotypeScore=7.3327;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.782;QD=22.90;ReadPosRankSum=2.419;SB=-2.073e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3709,405,0 chrXV 958713 . G A 3840.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=24.46;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3840,405,0 chrXV 958743 . C A 3426.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.47;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3426,363,0 chrXV 958888 . A G 2855 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.83;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2888,318,0 chrXV 958901 . T C 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-1.594;QD=19.72;ReadPosRankSum=1.709;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3030,330,0 chrXV 959231 . T C 3958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.284;QD=23.28;ReadPosRankSum=1.712;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3958,435,0 chrXV 959394 . A G 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.056;QD=22.99;ReadPosRankSum=1.648;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:1,163:166:99:3816,414,0 chrXV 959511 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3458,381,0 chrXV 959637 . T C 4662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=207;Dels=0.00;FS=2.811;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=-0.302;QD=22.52;ReadPosRankSum=2.390;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4662,519,0 chrXV 959820 . G A 4886.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.6404;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4886,520,0 chrXV 960224 . A G 3173 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.83;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3206,354,0 chrXV 960232 . A C 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.337;QD=22.78;ReadPosRankSum=1.684;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3281,369,0 chrXV 960346 . C A 2511 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.02;FS=0.000;HaplotypeScore=10.8871;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.62;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2544,267,0 chrXV 960384 . G A 2785 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=14.7851;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.21;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2818,297,0 chrXV 960428 . G A 2989 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.30;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3022,327,0 chrXV 960509 . A C 2182 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.27;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2215,243,0 chrXV 960599 . A G 1982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=89;Dels=0.00;FS=2.428;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=1.262;QD=22.27;ReadPosRankSum=2.853;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:3,86:89:99:2015,222,0 chrXV 960650 . A G 1836 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.86;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1869,207,0 chrXV 960877 . A G 2581 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=25.55;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2614,297,0 chrXV 961004 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.79;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3030,327,0 chrXV 961217 . T C 4406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.415;DP=195;Dels=0.00;FS=9.049;HaplotypeScore=12.6731;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.094;QD=22.59;ReadPosRankSum=3.379;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:4,191:195:99:4406,480,0 chrXV 961391 . A G 5437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=225;Dels=0.00;FS=6.525;HaplotypeScore=17.3309;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.946;QD=24.16;ReadPosRankSum=2.405;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:2,220:225:99:5437,594,0 chrXV 961586 . C T 4133.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4133,447,0 chrXV 961841 . C T 2683 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2716,294,0 chrXV 962198 . T C 4793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=204;Dels=0.00;FS=3.028;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.103;QD=23.50;ReadPosRankSum=2.401;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:2,200:204:99:4793,537,0 chrXV 962816 . C T 5155.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=12.1229;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.22;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5155,561,0 chrXV 963149 . G A 4618.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.75;SB=-2.263e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4618,490,0 chrXV 963377 . G A 4354.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.74;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:4354,471,0 chrXV 963680 . C A 5153.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.32;SB=-2.814e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5153,550,0 chrXV 964208 . C T 4915.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.3864;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4915,525,0 chrXV 964349 . T C 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.535;DP=176;Dels=0.00;FS=17.426;HaplotypeScore=20.3707;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.294;QD=21.94;ReadPosRankSum=3.722;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:5,171:176:99:3861,423,0 chrXV 964421 . A G 4628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=191;Dels=0.00;FS=3.274;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.602;QD=24.23;ReadPosRankSum=1.714;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:1,186:191:99:4628,510,0 chrXV 964661 . T C 5081.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=12.5410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.354;QD=21.17;ReadPosRankSum=1.718;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:1,237:240:99:5081,570,0 chrXV 965123 . A G 4473.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=191;Dels=0.00;FS=3.126;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.097;QD=23.42;ReadPosRankSum=1.678;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4473,489,0 chrXV 965240 . G A 5184.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.00;SB=-2.729e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5184,559,0 chrXV 965470 . A T 4832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=205;Dels=0.00;FS=3.506;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.528;QD=23.57;ReadPosRankSum=1.698;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:4832,522,0 chrXV 965798 . A G 7729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=318;Dels=0.00;FS=3.149;HaplotypeScore=15.2943;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=1.046;QD=24.31;ReadPosRankSum=1.699;SB=-4.175e+03 GT:AD:DP:GQ:PL 1/1:1,317:318:99:7729,847,0 chrXV 965983 . A G 5055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.641;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=19.3161;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.045;QD=20.80;ReadPosRankSum=2.971;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:3,240:243:99:5055,561,0 chrXV 966067 . C A 3165 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=23.44;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3198,339,0 chrXV 966276 . T C 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=137;Dels=0.00;FS=2.898;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;MQRankSum=0.547;QD=21.21;ReadPosRankSum=2.378;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2939,321,0 chrXV 966317 . C T 2227 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=3.203;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=0;MQRankSum=-1.551;QD=19.20;ReadPosRankSum=-0.678;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2260,224,0 chrXV 966318 . A G 2162 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;MQRankSum=-1.642;QD=18.80;ReadPosRankSum=1.702;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2195,243,0 chrXV 966325 . A G 2244 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=70.0651;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;MQRankSum=-1.318;QD=19.18;ReadPosRankSum=1.703;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2277,249,0 chrXV 966369 . G A 1749 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=23.32;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1782,189,0 chrXV 966428 . C T 1503 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=23.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1536,162,0 chrXV 966456 . G A 1854 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=22.07;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1887,207,0 chrXV 966472 . G T 2025 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=22.50;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2058,219,0 chrXV 966610 . A G 2809 filter AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2842,306,0 chrXV 966621 . A G 2903 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1451;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2936,330,0 chrXV 966732 . C T 1760 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.88;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1793,189,0 chrXV 966892 . A G 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.178;QD=21.54;ReadPosRankSum=1.707;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2963,324,0 chrXV 966914 . T C 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=138;Dels=0.00;FS=2.990;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-1.265;QD=21.18;ReadPosRankSum=2.414;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:2956,330,0 chrXV 967170 . G A 4005.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=16.1917;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.70;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4005,432,0 chrXV 967253 . T G 4329.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4329,492,0 chrXV 967353 . G A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4077,447,0 chrXV 967506 . C T 3745.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.64;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3745,393,0 chrXV 967667 . T C 2822 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.52;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2855,312,0 chrXV 967862 . G A 2584 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.93;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2617,276,0 chrXV 968047 . C T 2532 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1011;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=24.11;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2565,270,0 chrXV 968067 . G A 2376 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=6.1226;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;QD=21.60;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2409,270,0 chrXV 968127 . T G 156.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=124.5032;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;MQRankSum=-0.773;QD=1.17;ReadPosRankSum=1.705;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:24:189,24,0 chrXV 968286 . T A 996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.013;DP=112;Dels=0.00;FS=12.817;HaplotypeScore=15.5771;MLEAC=2;MLEAF=1.00;MQ=41.15;MQ0=0;MQRankSum=-2.503;QD=8.89;ReadPosRankSum=2.737;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:4,102:112:94:1029,94,0 chrXV 968332 . T G 2475 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.7933;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=16.61;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2508,282,0 chrXV 968360 . C T 3713.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=19.96;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3713,399,0 chrXV 968476 . G A 3150 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=22.18;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3183,339,0 chrXV 968483 . G A 3067 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=21.75;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3100,327,0 chrXV 968504 . T C 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;MQRankSum=0.076;QD=18.12;ReadPosRankSum=1.707;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2498,273,0 chrXV 968586 . T C 2787 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.44;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2820,306,0 chrXV 968918 . A T 3076 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.19;MQ0=0;QD=22.13;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3109,327,0 chrXV 968934 . T C 2752 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=144;Dels=0.00;FS=2.929;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;MQRankSum=-1.659;QD=19.11;ReadPosRankSum=2.415;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:2785,306,0 chrXV 968938 . G A 2848 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=18.99;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2881,309,0 chrXV 968942 . C T 2709 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=40.94;MQ0=0;QD=17.82;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2742,297,0 chrXV 968970 . C T 2391 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;QD=17.20;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2424,258,0 chrXV 968991 . C T 2796 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=19.83;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2829,300,0 chrXV 969023 . A G 3022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=140;Dels=0.00;FS=3.034;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=1.185;QD=21.59;ReadPosRankSum=1.238;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3055,333,0 chrXV 969046 . G A 2699 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.25;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2732,294,0 chrXV 969067 . T C 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=3.417;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.324;QD=20.43;ReadPosRankSum=1.704;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2546,285,0 chrXV 969112 . C T 2920 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=24.54;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2953,312,0 chrXV 969164 . A G 2453 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=21.90;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2486,273,0 chrXV 969272 . G A 2404 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.2435;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=21.46;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2437,270,0 chrXV 969326 . T G 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=116;Dels=0.00;FS=5.291;HaplotypeScore=25.1745;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;MQRankSum=-0.549;QD=22.97;ReadPosRankSum=2.939;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:3,111:116:99:2698,297,0 chrXV 969361 . T G 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=5.419;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;MQRankSum=-1.115;QD=24.50;ReadPosRankSum=-0.360;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2508,279,0 chrXV 969390 . T C 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.1439;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;MQRankSum=-1.175;QD=22.74;ReadPosRankSum=1.692;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:2034,225,0 chrXV 969502 . T C 2976 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=13.2937;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;QD=21.26;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3009,339,0 chrXV 969510 . G A 3056 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;QD=21.22;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3089,336,0 chrXV 969519 . G A 2729 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=0;QD=19.92;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2762,303,0 chrXV 969549 . A T 1858 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.41;MQ0=0;QD=16.02;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1891,201,0 chrXV 969551 . G A 1772 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.51;MQ0=0;QD=15.41;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1805,195,0 chrXV 969557 . C A 1728 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.08;MQ0=0;QD=14.16;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1761,189,0 chrXV 969563 . G C 1785 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.83;MQ0=0;QD=13.22;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,131:135:99:1818,198,0 chrXV 969591 . C T 2543 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=16.62;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2576,273,0 chrXV 969715 . A G 123.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.930;DP=155;Dels=0.00;FS=2.076;HaplotypeScore=131.7143;MLEAC=1;MLEAF=0.500;MQ=34.95;MQ0=0;MQRankSum=1.053;QD=0.80;ReadPosRankSum=-6.641;SB=-6.440e-01 GT:AD:DP:GQ:PL 0/1:135,19:155:5:153,0,5 chrXV 969855 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.449;DP=259;Dels=0.02;FS=2.931;HaplotypeScore=24.3944;MLEAC=2;MLEAF=1.00;MQ=32.10;MQ0=0;MQRankSum=-0.063;QD=13.36;ReadPosRankSum=1.203;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:2,252:254:99:3460,393,0 chrXV 969857 . G C 3213.98 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.02;FS=0.000;HaplotypeScore=34.7255;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=12.75;SB=-2.202e+03 GT:AD:DP:GQ:PL 1/1:0,187:246:99:3247,351,0 chrXV 969868 . A G 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.551;DP=250;Dels=0.00;FS=154.458;HaplotypeScore=156.4258;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=0;MQRankSum=0.533;QD=10.86;ReadPosRankSum=0.047;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:67,183:250:99:2748,155,0 chrXV 969870 . T C 3100 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=157.2145;MLEAC=2;MLEAF=1.00;MQ=29.74;MQ0=0;MQRankSum=1.676;QD=12.55;ReadPosRankSum=1.718;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:1,246:247:99:3133,345,0 chrXV 969879 . C T 256.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.290;DP=248;Dels=0.00;FS=148.821;HaplotypeScore=306.6473;MLEAC=1;MLEAF=0.500;MQ=30.26;MQ0=0;MQRankSum=1.539;QD=1.03;ReadPosRankSum=0.274;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:178,70:248:99:286,0,478 chrXV 969880 . C T 464.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.800;DP=248;Dels=0.00;FS=152.620;HaplotypeScore=307.3813;MLEAC=1;MLEAF=0.500;MQ=30.26;MQ0=0;MQRankSum=-2.505;QD=1.87;ReadPosRankSum=-0.129;SB=-1.731e+03 GT:AD:DP:GQ:PL 0/1:71,177:248:99:494,0,326 chrXV 969882 . C G 442.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.281;DP=246;Dels=0.00;FS=154.818;HaplotypeScore=306.7933;MLEAC=1;MLEAF=0.500;MQ=30.27;MQ0=0;MQRankSum=-0.715;QD=1.80;ReadPosRankSum=-0.770;SB=-1.711e+03 GT:AD:DP:GQ:PL 0/1:67,178:246:99:472,0,352 chrXV 969896 . T C 1687.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.584;DP=237;Dels=0.00;FS=163.109;HaplotypeScore=408.5513;MLEAC=1;MLEAF=0.500;MQ=32.96;MQ0=0;MQRankSum=-3.154;QD=7.12;ReadPosRankSum=0.117;SB=-1.434e+03 GT:AD:DP:GQ:PL 0/1:75,162:237:99:1717,0,404 chrXV 969904 . G A 1697.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.012;DP=223;Dels=0.00;FS=142.466;HaplotypeScore=7.9648;MLEAC=1;MLEAF=0.500;MQ=34.12;MQ0=0;MQRankSum=-4.951;QD=7.61;ReadPosRankSum=-3.414;SB=-1.526e+03 GT:AD:DP:GQ:PL 0/1:67,155:223:99:1727,0,671 chrXV 969909 . C A 1522.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.235;DP=220;Dels=0.00;FS=146.136;HaplotypeScore=7.8412;MLEAC=1;MLEAF=0.500;MQ=35.09;MQ0=0;MQRankSum=-5.435;QD=6.92;ReadPosRankSum=-4.094;SB=-1.517e+03 GT:AD:DP:GQ:PL 0/1:69,150:220:99:1552,0,744 chrXV 969912 . T C 613.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.834;DP=157;Dels=0.00;FS=113.919;HaplotypeScore=6.1858;MLEAC=1;MLEAF=0.500;MQ=37.53;MQ0=0;MQRankSum=-4.262;QD=3.90;ReadPosRankSum=0.972;SB=-7.250e+02 GT:AD:DP:GQ:PL 0/1:71,86:157:99:643,0,954 chrXV 969913 . T A 615.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.115;DP=156;Dels=0.00;FS=113.292;HaplotypeScore=6.1858;MLEAC=1;MLEAF=0.500;MQ=37.58;MQ0=0;MQRankSum=-5.853;QD=3.94;ReadPosRankSum=0.062;SB=-7.550e+02 GT:AD:DP:GQ:PL 0/1:70,86:156:99:645,0,1027 chrXV 969915 . A T 579.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;DP=157;Dels=0.00;FS=104.364;HaplotypeScore=7.7632;MLEAC=1;MLEAF=0.500;MQ=38.23;MQ0=0;MQRankSum=-4.552;QD=3.69;ReadPosRankSum=-1.664;SB=-7.690e+02 GT:AD:DP:GQ:PL 0/1:69,87:157:99:609,0,1079 chrXV 969916 . A C,G 1820.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=1,1;MLEAF=0.500,0.500;MQ=38.49;MQ0=0;QD=11.97;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/2:0,86,66:152:99:1880,1119,1023,760,0,622 chrXV 969919 . T C 579.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;DP=155;Dels=0.00;FS=95.169;HaplotypeScore=5.3972;MLEAC=1;MLEAF=0.500;MQ=39.02;MQ0=0;MQRankSum=-6.047;QD=3.74;ReadPosRankSum=-2.194;SB=-7.402e+02 GT:AD:DP:GQ:PL 0/1:69,86:155:99:609,0,1092 chrXV 969922 . C G 607.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.555;DP=156;Dels=0.00;FS=88.944;HaplotypeScore=4.6085;MLEAC=1;MLEAF=0.500;MQ=39.19;MQ0=0;MQRankSum=-6.718;QD=3.89;ReadPosRankSum=-3.070;SB=-7.670e+02 GT:AD:DP:GQ:PL 0/1:70,86:156:99:637,0,1177 chrXV 969926 . T C 625.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.096;DP=154;Dels=0.00;FS=87.726;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=39.76;MQ0=0;MQRankSum=-6.515;QD=4.06;ReadPosRankSum=-4.917;SB=-7.760e+02 GT:AD:DP:GQ:PL 0/1:68,86:154:99:655,0,1301 chrXV 969930 . T G 520.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.437;DP=157;Dels=0.00;FS=85.543;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=40.24;MQ0=0;MQRankSum=-6.399;QD=3.31;ReadPosRankSum=-4.685;SB=-7.530e+02 GT:AD:DP:GQ:PL 0/1:71,86:157:99:550,0,1338 chrXV 969961 . A G 2025 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=16.20;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2058,228,0 chrXV 969964 . C T 57.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.877;DP=243;Dels=0.00;FS=44.244;HaplotypeScore=6.4928;MLEAC=1;MLEAF=0.500;MQ=39.04;MQ0=0;MQRankSum=-7.480;QD=0.23;ReadPosRankSum=-10.173;SB=-1.296e+03 GT:AD:DP:GQ:PL 0/1:102,141:243:87:87,0,1690 chrXV 969966 . A G 1627.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;DP=254;Dels=0.00;FS=43.883;HaplotypeScore=8.8589;MLEAC=1;MLEAF=0.500;MQ=39.50;MQ0=0;MQRankSum=7.132;QD=6.41;ReadPosRankSum=9.138;SB=-2.430e+02 GT:AD:DP:GQ:PL 0/1:145,106:254:99:1657,0,124 chrXV 969988 . C T 865.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.368;DP=290;Dels=0.00;FS=17.282;HaplotypeScore=14.5077;MLEAC=1;MLEAF=0.500;MQ=40.05;MQ0=0;MQRankSum=-3.432;QD=2.98;ReadPosRankSum=-2.289;SB=-1.690e+03 GT:AD:DP:GQ:PL 0/1:125,165:290:99:895,0,2079 chrXV 970020 . G T 5294.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=38.33;MQ0=0;QD=16.97;SB=-4.091e+03 GT:AD:DP:GQ:PL 1/1:0,312:312:99:5294,562,0 chrXV 970025 . C T 2117.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.448;DP=322;Dels=0.00;FS=13.491;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=37.73;MQ0=0;MQRankSum=-0.607;QD=6.57;ReadPosRankSum=-0.227;SB=-1.375e+03 GT:AD:DP:GQ:PL 0/1:168,154:322:99:2147,0,2203 chrXV 970127 . A G 2619.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.931;DP=297;Dels=0.00;FS=8.869;HaplotypeScore=15.3674;MLEAC=1;MLEAF=0.500;MQ=36.08;MQ0=0;MQRankSum=2.862;QD=8.82;ReadPosRankSum=1.737;SB=-1.393e+03 GT:AD:DP:GQ:PL 0/1:152,144:297:99:2649,0,2634 chrXV 970135 . T C 2566.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.139;DP=295;Dels=0.00;FS=2.554;HaplotypeScore=16.0938;MLEAC=1;MLEAF=0.500;MQ=36.66;MQ0=0;MQRankSum=3.475;QD=8.70;ReadPosRankSum=2.754;SB=-1.310e+03 GT:AD:DP:GQ:PL 0/1:156,139:295:99:2596,0,2815 chrXV 970144 . G A 2809.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.609;DP=292;Dels=0.00;FS=0.431;HaplotypeScore=13.5978;MLEAC=1;MLEAF=0.500;MQ=37.51;MQ0=0;MQRankSum=-6.342;QD=9.62;ReadPosRankSum=-2.505;SB=-1.375e+03 GT:AD:DP:GQ:PL 0/1:138,153:292:99:2839,0,2566 chrXV 970257 . G T 1902.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.490;DP=195;Dels=0.00;FS=4.093;HaplotypeScore=5.6899;MLEAC=1;MLEAF=0.500;MQ=34.69;MQ0=0;MQRankSum=-1.666;QD=9.75;ReadPosRankSum=-2.298;SB=-3.260e+02 GT:AD:DP:GQ:PL 0/1:98,96:195:99:1932,0,1741 chrXV 970266 . A G 1716.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.227;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=1;MLEAF=0.500;MQ=32.96;MQ0=0;MQRankSum=-3.009;QD=8.37;ReadPosRankSum=-3.788;SB=-1.570e+02 GT:AD:DP:GQ:PL 0/1:104,101:205:99:1746,0,1949 chrXV 970270 . A T 1638.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583;DP=198;Dels=0.00;FS=2.406;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=32.29;MQ0=0;MQRankSum=-2.775;QD=8.27;ReadPosRankSum=-4.045;SB=-9.901e+01 GT:AD:DP:GQ:PL 0/1:104,94:198:99:1668,0,1909 chrXV 976257 . G C 293 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=5.14;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:33:326,33,0 chrXV 976367 . C T 759 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.29;MQ0=0;QD=11.68;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:84:792,84,0 chrXV 976373 . A C 704 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.87;MQ0=0;QD=11.17;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:81:737,81,0 chrXV 976385 . T A 674 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;MQRankSum=-0.052;QD=9.49;ReadPosRankSum=2.381;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:78:707,78,0 chrXV 976389 . G A 605 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.98;MQ0=0;QD=9.17;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:72:638,72,0 chrXV 976390 . C G 642 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.98;MQ0=0;QD=9.73;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:78:675,78,0 chrXV 976397 . T A 762 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;MQRankSum=-1.732;QD=9.29;ReadPosRankSum=1.648;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:84:795,84,0 chrXV 976399 . C A 759 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=1.8997;MLEAC=2;MLEAF=1.00;MQ=30.69;MQ0=0;QD=8.72;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:84:792,84,0 chrXV 976400 . A G 722 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.4770;MLEAC=2;MLEAF=1.00;MQ=31.62;MQ0=0;QD=8.02;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:84:755,84,0 chrXV 976528 . G A 1852 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=21.05;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1885,201,0 chrXV 976544 . C G 1740 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;QD=20.47;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1773,195,0 chrXV 976552 . A G 1606 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.6251;MLEAC=2;MLEAF=1.00;MQ=42.07;MQ0=0;QD=20.59;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1639,177,0 chrXV 976912 . T A 1512 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1545,168,0 chrXV 976981 . T C 1138 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=35.5830;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.96;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1171,129,0 chrXV 977042 . G T 62.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;DP=79;Dels=0.01;FS=62.405;HaplotypeScore=9.3654;MLEAC=1;MLEAF=0.500;MQ=51.21;MQ0=0;MQRankSum=2.274;QD=0.78;ReadPosRankSum=-4.112;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,20:78:92:92,0,361 chrXV 977302 . T C 3995.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.562;QD=24.51;ReadPosRankSum=1.711;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3995,438,0 chrXV 977398 . T C 3484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.474;QD=21.64;ReadPosRankSum=1.711;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3484,369,0 chrXV 977533 . G A 3537.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.05;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3537,375,0 chrXV 977572 . C T 3329.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.8071;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.62;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3329,348,0 chrXV 977599 . C T 3598.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.07;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3598,387,0 chrXV 977636 . C T 3461.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.77;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3461,378,0 chrXV 977770 . T C 3278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.611;QD=23.58;ReadPosRankSum=1.707;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3278,366,0 chrXV 978361 . T G 2865 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.70;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2898,318,0 chrXV 978407 . A G 3337.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.09;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3337,363,0 chrXV 978537 . A G 4919.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=22.6719;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.84;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,194:198:99:4919,537,0 chrXV 978614 . T G 4585.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.0668;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.63;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4585,516,0 chrXV 978665 . G A 4444.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.03;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4444,483,0 chrXV 978778 . A C 4938.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.0341;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.85;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:4938,543,0 chrXV 978907 . T G 4193.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.5972;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.28;SB=-2.504e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4193,456,0 chrXV 978953 . C A 5071.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.5452;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.84;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5071,541,0 chrXV 978995 . G T 4860.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=17.6309;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.70;SB=-2.762e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:4860,531,0 chrXV 979059 . G A 5369.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.76;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5369,574,0 chrXV 979094 . C T 6584.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=16.0680;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.57;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,265:268:99:6584,697,0 chrXV 979379 . C T 6469.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=17.8214;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.00;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,290:294:99:6469,703,0 chrXV 979419 . T C 4974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=225;Dels=0.00;FS=3.732;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=0.562;QD=22.11;ReadPosRankSum=1.716;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:1,221:225:99:4974,546,0 chrXV 979457 . C T 4417.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=25.24;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4417,466,0 chrXV 979502 . C G 2513 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=22.44;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2546,276,0 chrXV 979605 . A G 1930 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=21.69;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1963,213,0 chrXV 979760 . C G 209.01 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=20.90;SB=-1.318e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:27:242,27,0 chrXV 979929 . G C 1885 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=24.48;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1918,213,0 chrXV 979973 . T A 1334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=73;Dels=0.00;FS=2.716;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;MQRankSum=0.220;QD=18.27;ReadPosRankSum=2.213;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1367,144,0 chrXV 979981 . A G 1450 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=20.42;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1483,162,0 chrXV 980032 . G A 2375 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;QD=21.79;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2408,255,0 chrXV 980039 . T C 2483 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.52;MQ0=0;QD=21.22;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2516,276,0 chrXV 980604 . C T 233 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.82;MQ0=0;QD=3.88;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:30:266,30,0 chrXV 980666 . G A 2464 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.3282;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=21.81;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2497,264,0 chrXV 980701 . A T 3142 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=24.94;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3175,348,0 chrXV 980913 . C A 2659 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6964;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.44;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2692,288,0 chrXV 981009 . T C 2423 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.75;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2456,270,0 chrXV 981018 . G A 2403 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.52;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2436,261,0 chrXV 981230 . C T 1509 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=19.10;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1542,162,0 chrXV 981233 . C T 1521 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=20.01;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1554,168,0 chrXV 981273 . A G 1870 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=20.11;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1903,210,0 chrXV 981291 . T G 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=3.375;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=1.135;QD=18.97;ReadPosRankSum=1.653;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1702,192,0 chrXV 981304 . A T 1960 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=21.30;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1993,216,0 chrXV 981378 . C T 1797 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=19.12;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1830,195,0 chrXV 981382 . G A 1760 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;QD=18.33;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1793,198,0 chrXV 981410 . C A 1557 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;QD=17.90;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1590,177,0 chrXV 981447 . T C 1746 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=18.38;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1779,198,0 chrXV 981456 . A G 1741 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=17.95;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1774,195,0 chrXV 981571 . A G 1065 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.36;MQ0=0;QD=11.45;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1098,123,0 chrXV 981589 . C A 1566 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=38.90;MQ0=0;QD=14.24;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1599,171,0 chrXV 981708 . T C 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=119;Dels=0.00;FS=3.010;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-1.974;QD=24.58;ReadPosRankSum=2.408;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2958,327,0 chrXV 981779 . C T 3038 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=23.37;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3071,330,0 chrXV 981860 . G A 3332.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.14;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3332,366,0 chrXV 981961 . G A 3637.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.6867;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=26.17;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3637,381,0 chrXV 982089 . A G 3569.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.18;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3569,393,0 chrXV 982131 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.32;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2933,324,0 chrXV 982145 . T C 2878 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=19.99;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2911,318,0 chrXV 982160 . C T 2741 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.03;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2774,306,0 chrXV 982250 . C A 4030.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.7776;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.99;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4030,429,0 chrXV 982533 . G A 3569.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3569,387,0 chrXV 982665 . G A 4454.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.44;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:4454,472,0 chrXV 982754 . T C 4354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=184;Dels=0.00;FS=5.993;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.546;QD=23.66;ReadPosRankSum=2.896;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:3,181:184:99:4354,474,0 chrXV 982860 . C A 5344.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=13.0712;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.29;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5344,571,0 chrXV 983117 . A G 3401.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.9771;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.66;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3401,375,0 chrXV 983290 . G A 3787.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.2951;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.82;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3787,402,0 chrXV 983423 . G A 4014.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.1403;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.63;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4014,435,0 chrXV 983694 . T C 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=4.143;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.454;QD=22.02;ReadPosRankSum=1.704;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2763,303,0 chrXV 983798 . A C 3599.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.68;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3599,396,0 chrXV 983849 . C T 3017 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.74;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3050,324,0 chrXV 983852 . T C 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=162;Dels=0.00;FS=2.569;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-0.805;QD=17.07;ReadPosRankSum=2.780;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:3,157:162:99:2799,309,0 chrXV 983939 . T C 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=133;Dels=0.00;FS=5.994;HaplotypeScore=8.5063;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.538;QD=23.12;ReadPosRankSum=2.947;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:3108,348,0 chrXV 984011 . T C 2836 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.0963;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=24.03;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2869,321,0 chrXV 984169 . A T 2415 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.00;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2448,261,0 chrXV 984290 . A G 2355 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=22.01;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2388,264,0 chrXV 984300 . A G 2371 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=20.26;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2404,264,0 chrXV 984317 . G A 2185 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=18.68;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2218,231,0 chrXV 984323 . C T 1925 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=16.45;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1958,210,0 chrXV 984651 . G A 3162 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3195,342,0 chrXV 984859 . T C 2748 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.7759;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;QD=21.47;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2781,309,0 chrXV 984910 . T A 2221 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.1248;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.36;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2254,240,0 chrXV 984992 . C T 3069 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3102,330,0 chrXV 985158 . C T 5645.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=13.4398;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.89;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5645,604,0 chrXV 985377 . A G 4659.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=238;Dels=0.00;FS=2.977;HaplotypeScore=20.0078;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.830;QD=19.58;ReadPosRankSum=2.388;SB=-2.822e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:4659,513,0 chrXV 985518 . A G 4514.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=15.1751;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.61;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4514,507,0 chrXV 985926 . T C 3195 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=20.75;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3228,351,0 chrXV 985932 . A G 3168 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.31;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3201,351,0 chrXV 986517 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6499;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=21.55;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3384,372,0 chrXV 986764 . C T 1639 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=18.84;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1672,174,0 chrXV 986792 . T C 2238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=0.951;QD=21.94;ReadPosRankSum=1.698;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2271,252,0 chrXV 986838 . A G 3384.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.88;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3384,369,0 chrXV 986977 . C T 4182.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.12;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4182,447,0 chrXV 986991 . A G 4404.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.1666;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.20;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,215:218:99:4404,483,0 chrXV 987106 . A T 5501.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.0793;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-2.860e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5501,594,0 chrXV 987496 . C T 6229.01 PASS AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=14.3842;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.01;SB=-3.503e+03 GT:AD:DP:GQ:PL 1/1:0,282:283:99:6229,670,0 chrXV 987667 . G A 3642.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.8218;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.90;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3642,396,0 chrXV 988096 . G A 4686.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=15.1754;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.64;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,203:207:99:4686,513,0 chrXV 988671 . C T 3062 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=16.2973;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=15.95;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:2,188:192:99:3095,339,0 chrXV 988849 . G A 164.06 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=95.5799;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=1.22;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:21:197,21,0 chrXV 988993 . C T 4667.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4667,507,0 chrXV 989061 . T C 4385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-1.437;QD=24.91;ReadPosRankSum=1.693;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4385,477,0 chrXV 989204 . G A 5121.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=13.5910;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.86;SB=-2.402e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5121,547,0 chrXV 989551 . G C 2947 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.67;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2980,321,0 chrXV 989690 . A G 1843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.397;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.258;QD=19.61;ReadPosRankSum=1.658;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1876,204,0 chrXV 989742 . A G 1749 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.9218;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=16.98;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1782,204,0 chrXV 989863 . G A 2662 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.56;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2695,288,0 chrXV 990623 . G A 4073.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:4073,432,0 chrXV 990985 . A T 3301.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=156;Dels=0.00;FS=4.579;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.190;QD=21.16;ReadPosRankSum=1.710;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3301,354,0 chrXV 991009 . G T 3664.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.34;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3664,382,0 chrXV 991111 . C T 3610.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.44;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3610,384,0 chrXV 991162 . C G 3612.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.43;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3612,408,0 chrXV 991192 . C T 3767.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.56;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3767,397,0 chrXV 991316 . G A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3283,348,0 chrXV 991545 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.41;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2991,324,0 chrXV 991595 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=23.13;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2809,303,0 chrXV 991649 . C A 3388.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=24.03;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3388,357,0 chrXV 991690 . T C 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.050;DP=173;Dels=0.00;FS=10.836;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.449;QD=19.95;ReadPosRankSum=4.034;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:6,165:173:99:3451,384,0 chrXV 991696 . A T 3527.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.99;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3527,378,0 chrXV 991744 . G T 3295.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1437;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.47;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3295,345,0 chrXV 991809 . G A 4124.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.5653;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=23.43;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4124,436,0 chrXV 991825 . C T 3917.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=22.38;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3917,420,0 chrXV 991846 . T G 4084.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=20.63;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4084,444,0 chrXV 991864 . C T 4016.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.9912;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=19.98;SB=-2.613e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4016,418,0 chrXV 991945 . A G 3327.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.5432;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.19;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3327,369,0 chrXV 992008 . T C 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=3.546;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.411;QD=20.37;ReadPosRankSum=1.713;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3687,414,0 chrXV 992014 . C T 3909.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=21.36;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3909,420,0 chrXV 992155 . G A 4155.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=24.02;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4155,436,0 chrXV 992203 . A T 3439.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.8973;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=23.55;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3439,369,0 chrXV 992356 . C T 2954 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=18.46;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2987,321,0 chrXV 992374 . A G 2605 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;QD=16.81;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2638,294,0 chrXV 992377 . A G 2618 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=158;Dels=0.00;FS=5.526;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.46;MQ0=0;MQRankSum=-2.255;QD=16.57;ReadPosRankSum=2.956;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:2651,291,0 chrXV 992383 . A T 2427 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=153;Dels=0.00;FS=2.862;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.07;MQ0=0;MQRankSum=0.217;QD=15.86;ReadPosRankSum=2.417;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:2460,270,0 chrXV 992413 . C A 2402 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;QD=15.20;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2435,261,0 chrXV 992458 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=16.96;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2407,264,0 chrXV 992467 . A G 2371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=135;Dels=0.00;FS=2.935;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-0.564;QD=17.56;ReadPosRankSum=2.413;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:2,131:135:99:2404,267,0 chrXV 992529 . G C 2751 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.51;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:2784,300,0 chrXV 992674 . C A 2720 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=24.07;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2753,294,0 chrXV 992758 . G A 3188 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.97;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3221,339,0 chrXV 993116 . C G 2745 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.3893;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.32;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2778,306,0 chrXV 993617 . G A 2864 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.73;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2897,309,0 chrXV 993650 . T C 2855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=140;Dels=0.00;FS=3.074;HaplotypeScore=5.8059;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-0.828;QD=20.39;ReadPosRankSum=1.707;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2888,318,0 chrXV 993667 . A G 2753 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.02;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2786,303,0 chrXV 993703 . G A 2960 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=21.29;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2993,327,0 chrXV 993754 . G A 3135 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=22.55;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3168,333,0 chrXV 993775 . G C 2858 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=19.05;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:2891,312,0 chrXV 993796 . C T 2919 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=19.46;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2952,312,0 chrXV 994160 . A T 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=-0.374;QD=19.65;ReadPosRankSum=1.562;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2037,216,0 chrXV 994161 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.18;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2031,216,0 chrXV 994342 . T C 2596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=113;Dels=0.00;FS=3.050;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-1.576;QD=22.97;ReadPosRankSum=1.701;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2629,291,0 chrXV 994833 . T C 2987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=137;Dels=0.00;FS=4.143;HaplotypeScore=15.8124;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.142;QD=21.80;ReadPosRankSum=1.706;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3020,333,0 chrXV 994997 . G A 1457 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=16.37;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1490,159,0 chrXV 995013 . T C 1589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=94;Dels=0.00;FS=3.499;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.774;QD=16.90;ReadPosRankSum=1.695;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1622,180,0 chrXV 995138 . C T 2225 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=23.42;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2258,240,0 chrXV 995783 . A C 3454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=147;Dels=0.00;FS=2.980;HaplotypeScore=12.5678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.144;QD=23.50;ReadPosRankSum=2.399;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:3454,378,0 chrXV 995905 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.60;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2546,273,0 chrXV 996121 . G T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.46;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3742,399,0 chrXV 996308 . A G 5550.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=237;Dels=0.00;FS=3.704;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.630;QD=23.42;ReadPosRankSum=1.717;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:5550,606,0 chrXV 996329 . C T 4994.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=23.23;SB=-2.883e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4994,538,0 chrXV 996462 . A G 4635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=20.1797;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.005;QD=19.47;ReadPosRankSum=2.346;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:2,235:238:99:4635,513,0 chrXV 996592 . T C 2954 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=22.21;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2987,327,0 chrXV 996601 . A G 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=126;Dels=0.00;FS=3.041;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=0.849;QD=21.13;ReadPosRankSum=2.411;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2695,300,0 chrXV 996702 . A T 3171 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.7920;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.87;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3204,342,0 chrXV 996792 . A G 2999 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=3.430;HaplotypeScore=3.3481;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;MQRankSum=-0.577;QD=21.27;ReadPosRankSum=1.708;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3032,336,0 chrXV 996800 . G A 2672 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=19.22;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2705,303,0 chrXV 996801 . A G 2728 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.114;DP=137;Dels=0.00;FS=3.964;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;MQRankSum=1.125;QD=19.91;ReadPosRankSum=-0.443;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2761,312,0 chrXV 996851 . A C 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=140;Dels=0.00;FS=3.514;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-0.468;QD=16.96;ReadPosRankSum=1.707;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,136:140:99:2408,270,0 chrXV 996896 . T C 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=180;Dels=0.00;FS=2.831;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.021;QD=21.93;ReadPosRankSum=2.422;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:2,177:180:99:3948,423,0 chrXV 996969 . T C 3567.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=23.62;SB=-1.895e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3567,393,0 chrXV 996989 . G A 2918 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=20.99;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2951,309,0 chrXV 997011 . C T 2715 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=20.57;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2748,288,0 chrXV 997118 . G A 3394.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.4036;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.62;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3394,372,0 chrXV 997162 . T A 3061 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=20.97;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3094,336,0 chrXV 997164 . G A 2905 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=20.17;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2938,312,0 chrXV 997192 . A G 2229 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=15.81;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2262,249,0 chrXV 997197 . T A 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;MQRankSum=-0.848;QD=15.19;ReadPosRankSum=1.708;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2235,243,0 chrXV 997246 . C G 3289.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.9062;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.93;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3289,363,0 chrXV 997326 . A G 4104.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.6160;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.28;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:4104,468,0 chrXV 997395 . T C 4890.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=206;Dels=0.00;FS=2.981;HaplotypeScore=13.3943;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=0.163;QD=23.74;ReadPosRankSum=2.365;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:2,202:205:99:4890,543,0 chrXV 997446 . C T 5158.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=21.95;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5158,561,0 chrXV 997473 . C T 4868.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.7697;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.54;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:4868,525,0 chrXV 997553 . G C 4217.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.8071;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.27;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4217,462,0 chrXV 997902 . G C 2724 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.51;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2757,309,0 chrXV 998121 . A G 2432 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.33;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2465,270,0 chrXV 998181 . T C 853 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=17.41;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,48:49:99:886,102,0 chrXV 998205 . G A 1154 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.23;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1187,126,0 chrXV 998211 . C T 1228 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.13;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1261,135,0 chrXV 998421 . G A 1962 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.52;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1995,213,0 chrXV 998864 . G A 4409.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=25.19;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:4409,468,0 chrXV 998903 . C A 4747.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.0657;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.74;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4747,505,0 chrXV 998921 . G A 4572.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.63;SB=-2.700e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4572,498,0 chrXV 998950 . T C 4796.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.2515;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.41;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4796,534,0 chrXV 999189 . C T 5133.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=21.8224;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.76;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:5133,547,0 chrXV 999375 . C G 5002.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=20.1469;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.94;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:5002,546,0 chrXV 1000634 . G A 3588.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.76;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3588,376,0 chrXV 1000993 . A T 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.041;DP=101;Dels=0.05;FS=62.964;HaplotypeScore=17.1306;MLEAC=1;MLEAF=0.500;MQ=54.60;MQ0=0;MQRankSum=0.188;QD=0.24;ReadPosRankSum=-0.524;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,18:96:54:54,0,575 chrXV 1000996 . T C 723.34 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.383;DP=107;Dels=0.00;FS=55.760;HaplotypeScore=24.0397;MLEAC=1;MLEAF=0.500;MQ=55.66;MQ0=0;MQRankSum=1.673;QD=6.76;ReadPosRankSum=2.116;SB=-3.313e+02 GT:AD:DP:GQ:PL 0/1:24,83:107:8:753,0,8 chrXV 1001053 . A C 2085 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.72;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2118,234,0 chrXV 1001210 . G A 3141 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.10;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3174,339,0 chrXV 1001234 . G A 3098 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.5425;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.37;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,141:145:99:3131,348,0 chrXV 1001411 . A C 3416.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=152;Dels=0.00;FS=2.745;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.687;QD=22.47;ReadPosRankSum=2.417;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:3416,372,0 chrXV 1001534 . G A 2834 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.49;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2867,309,0 chrXV 1002519 . C T 3626.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=3.3832;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.98;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3626,381,0 chrXV 1002523 . A C 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=168;Dels=0.00;FS=3.036;HaplotypeScore=3.3832;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=0.280;QD=21.48;ReadPosRankSum=1.670;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3609,393,0 chrXV 1002597 . T C 3134 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=21.03;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3167,345,0 chrXV 1002614 . C T 3050 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.07;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3083,324,0 chrXV 1002620 . T C 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=3.661;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-0.723;QD=20.72;ReadPosRankSum=1.686;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3162,348,0 chrXV 1002665 . T G 3233.06 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.46;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3269,360,0 chrXV 1002722 . G A 4026.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.01;FS=0.000;HaplotypeScore=7.4192;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=24.55;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4026,426,0 chrXV 1002911 . T C 3893.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=172;Dels=0.00;FS=3.270;HaplotypeScore=8.6681;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.161;QD=22.63;ReadPosRankSum=1.692;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3893,429,0 chrXV 1002944 . C T 3778.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.90;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3778,408,0 chrXV 1003101 . C T 3548.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.77;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3548,373,0 chrXV 1003120 . A T 3552.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.66;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3552,381,0 chrXV 1003263 . A G 4120.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=24.38;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4120,462,0 chrXV 1003289 . C G 3719.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=23.99;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3719,405,0 chrXV 1003317 . C T 3642.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=22.48;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,157:162:99:3642,399,0 chrXV 1003380 . C A 3693.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.52;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3693,399,0 chrXV 1003461 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.15;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2957,312,0 chrXV 1003494 . G A 3010 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=24.08;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3043,324,0 chrXV 1003506 . C G 2833 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.63;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2866,315,0 chrXV 1003790 . T C 2236 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.82;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2269,252,0 chrXV 1003809 . C A 2050 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.03;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2083,219,0 chrXV 1003942 . G A 2773 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.91;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2806,303,0 chrXV 1004026 . T C 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.980;QD=24.33;ReadPosRankSum=1.678;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3171,351,0 chrXV 1004045 . C A 2621 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=23.40;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2654,282,0 chrXV 1004093 . C T 1561 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=20.54;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1594,165,0 chrXV 1004103 . A C 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=-1.637;QD=19.92;ReadPosRankSum=1.590;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1487,165,0 chrXV 1004149 . T C 1734 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=19.93;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1767,195,0 chrXV 1004168 . A T 2226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=6.0525;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-1.107;QD=19.70;ReadPosRankSum=2.181;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:2,108:112:99:2259,240,0 chrXV 1004261 . T A 132.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.373;DP=61;Dels=0.00;FS=5.953;HaplotypeScore=68.6433;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;MQRankSum=3.005;QD=2.16;ReadPosRankSum=-6.048;SB=-1.461e+02 GT:AD:DP:GQ:PL 1/1:34,27:61:21:165,21,0 chrXV 1004312 . A C 767 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.18;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:800,87,0 chrXV 1004484 . C T 1231 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=59.5679;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=19.23;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1264,138,0 chrXV 1004534 . T C 1353 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.53;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1386,159,0 chrXV 1004868 . A T 2040 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2073,222,0 chrXV 1005274 . G A 2599 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.84;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2632,285,0 chrXV 1005541 . C T 2765 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.85;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2798,309,0 chrXV 1005694 . A G 3833.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=3.474;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.789;QD=24.26;ReadPosRankSum=1.666;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3833,426,0 chrXV 1005745 . C T 2763 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.62;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2796,309,0 chrXV 1005749 . T C 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=135;Dels=0.00;FS=3.031;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.046;QD=21.06;ReadPosRankSum=2.340;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2876,312,0 chrXV 1005814 . C A 2611 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.70;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2644,285,0 chrXV 1006168 . C T 3080 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.2922;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.16;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3113,342,0 chrXV 1006231 . A G 2821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=122;Dels=0.00;FS=3.979;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=1.328;QD=23.12;ReadPosRankSum=1.703;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2854,312,0 chrXV 1006252 . T C 2647 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.62;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2680,294,0 chrXV 1006767 . A T 1747 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.02;FS=0.000;HaplotypeScore=7.2734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.93;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1780,189,0 chrXV 1006876 . C T 2128 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.88;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2161,234,0 chrXV 1007117 . C T 4510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.478;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.5143;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.891;QD=25.34;ReadPosRankSum=-0.773;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4510,492,0 chrXV 1007259 . C G 4040.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4040,444,0 chrXV 1007338 . T C 4167.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.1875;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.65;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4167,459,0 chrXV 1007511 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.039;QD=21.41;ReadPosRankSum=1.363;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3267,354,0 chrXV 1007685 . G C 3366.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.05;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3366,372,0 chrXV 1007739 . C T 3970.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=11.9885;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.82;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3970,423,0 chrXV 1007883 . G A 3143 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.46;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3176,342,0 chrXV 1008101 . T C 3500.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3231;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.49;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3500,390,0 chrXV 1008532 . G A 4615.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.91;SB=-2.427e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4615,487,0 chrXV 1008666 . A T 4139.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.8030;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.78;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4139,459,0 chrXV 1008669 . C T 4108.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=4.1991;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.40;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4108,441,0 chrXV 1008915 . T A 2761 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.60;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2794,312,0 chrXV 1009143 . A T 505 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.42;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:57:538,57,0 chrXV 1009187 . A T 852 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:885,93,0 chrXV 1009233 . A G 1959 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1992,225,0 chrXV 1009425 . A G 3365.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.56;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3365,369,0 chrXV 1009862 . T C 4736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=222;Dels=0.00;FS=2.890;HaplotypeScore=3.8740;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-0.227;QD=21.33;ReadPosRankSum=2.383;SB=-2.496e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:4736,516,0 chrXV 1009919 . C T 2795 SnpCluster AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=15.97;SB=-2.321e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:2828,303,0 chrXV 1009923 . T C 2595 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=169;Dels=0.00;FS=3.036;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;MQRankSum=-0.707;QD=15.36;ReadPosRankSum=1.691;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:2628,291,0 chrXV 1009927 . G T 2630 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=15.65;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2663,282,0 chrXV 1009937 . C T 2437 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=6.4144;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=14.17;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2470,267,0 chrXV 1009993 . G A 3908.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=19.35;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:3908,417,0 chrXV 1010000 . A C 4126.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=18.93;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:0,217:218:99:4126,462,0 chrXV 1010114 . G A 4265.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=22.93;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4265,468,0 chrXV 1010147 . T C 4651.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=199;Dels=0.00;FS=5.291;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.823;QD=23.37;ReadPosRankSum=2.854;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:3,196:199:99:4651,516,0 chrXV 1010235 . T C 7127.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=306;Dels=0.00;FS=6.002;HaplotypeScore=16.4611;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-1.141;QD=23.29;ReadPosRankSum=2.938;SB=-3.682e+03 GT:AD:DP:GQ:PL 1/1:3,302:306:99:7127,783,0 chrXV 1010331 . A G 6403.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=21.7812;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,279:282:99:6403,717,0 chrXV 1010424 . A G 6914.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=330;Dels=0.00;FS=6.330;HaplotypeScore=23.4821;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=0.250;QD=20.95;ReadPosRankSum=2.420;SB=-3.909e+03 GT:AD:DP:GQ:PL 1/1:2,327:330:99:6914,754,0 chrXV 1011440 . C T 4176.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.8157;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.78;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4176,459,0 chrXV 1012118 . G A 3606.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.4062;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3606,381,0 chrXV 1013218 . T G 1208 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1241,135,0 chrXV 1013328 . T C 1653 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.28;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1686,186,0 chrXV 1013619 . G A 2195 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.6312;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.90;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2228,237,0 chrXV 1013642 . G A 2432 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.73;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2465,264,0 chrXV 1013726 . G A 2347 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.14;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2380,252,0 chrXV 1013787 . C T 2433 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.09;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2466,261,0 chrXV 1014162 . A T 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.035;QD=24.77;ReadPosRankSum=1.687;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3840,414,0 chrXV 1014297 . T C 4911.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=202;Dels=0.00;FS=2.980;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.173;QD=24.31;ReadPosRankSum=2.425;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:2,200:202:99:4911,546,0 chrXV 1014524 . G A 4005.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.6314;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.02;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4005,429,0 chrXV 1014853 . G A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3363,357,0 chrXV 1014996 . T C 2414 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2447,270,0 chrXV 1015451 . G A 3007 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.27;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3040,324,0 chrXV 1015465 . A G 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=134;Dels=0.00;FS=3.319;HaplotypeScore=7.3727;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.833;QD=21.28;ReadPosRankSum=1.706;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:1,130:134:99:2885,315,0 chrXV 1015648 . A G 4288.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.092;DP=189;Dels=0.00;FS=22.224;HaplotypeScore=2.3001;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.868;QD=22.69;ReadPosRankSum=4.122;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:6,183:189:99:4288,465,0 chrXV 1015664 . C T 4170.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=23.43;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4170,441,0 chrXV 1015982 . C T 3502.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=22.03;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3502,378,0 chrXV 1016006 . G T 3006 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=21.32;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3039,327,0 chrXV 1016606 . A G 3543.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3543,387,0 chrXV 1016726 . A G 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=137;Dels=0.00;FS=3.003;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.170;QD=22.67;ReadPosRankSum=2.414;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3139,342,0 chrXV 1017143 . G T 3640.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.47;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3640,387,0 chrXV 1017296 . G A 3318.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.73;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3318,366,0 chrXV 1017579 . A T 3407.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.71;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3407,363,0 chrXV 1017967 . G A 5426.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=14.9617;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.61;SB=-2.755e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5426,583,0 chrXV 1018423 . G T 5455.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=19.0829;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.27;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5455,583,0 chrXV 1018594 . T C 4208.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,176:181:99:4208,459,0 chrXV 1018794 . G A 3810.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.02;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3810,423,0 chrXV 1019036 . C G 2702 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=18.63;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2735,309,0 chrXV 1019095 . A G 1698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=4.249;HaplotypeScore=83.9147;MLEAC=2;MLEAF=1.00;MQ=34.13;MQ0=0;MQRankSum=-1.341;QD=12.77;ReadPosRankSum=1.680;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:1731,192,0 chrXV 1019356 . C T 2852 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.57;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2885,312,0 chrXV 1019408 . G T 3704.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.72;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3704,390,0 chrXV 1019470 . T C 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=8.0534;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.124;QD=23.66;ReadPosRankSum=2.402;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:2,102:105:99:2541,282,0 chrXV 1019659 . C T 2574 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8681;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.21;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2607,276,0 chrXV 1019882 . T C 2245 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.79;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2278,252,0 chrXV 1019978 . A G 265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.300;DP=24;Dels=0.00;FS=6.812;HaplotypeScore=13.7866;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;MQRankSum=-1.011;QD=11.04;ReadPosRankSum=1.445;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:1,23:24:33:298,33,0 chrXV 1019998 . A T 273 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=33.6776;MLEAC=2;MLEAF=1.00;MQ=31.40;MQ0=0;QD=7.18;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:33:306,33,0 chrXV 1020013 . T C 729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.990;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;MQRankSum=-0.937;QD=9.72;ReadPosRankSum=2.351;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:87:762,87,0 chrXV 1020132 . A G 1819 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.26;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1852,204,0 chrXV 1020191 . T C 2118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=-0.602;QD=23.02;ReadPosRankSum=1.694;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2151,237,0 chrXV 1020208 . C T 2535 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1026;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=22.43;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2568,273,0 chrXV 1020452 . C A 4600.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.96;SB=-2.508e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4600,490,0 chrXV 1020508 . C T 4587.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.7661;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.77;SB=-2.469e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4587,487,0 chrXV 1020567 . A G 3938.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.50;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3938,435,0 chrXV 1020659 . G C 3490.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=21.28;SB=-2.004e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3490,381,0 chrXV 1020660 . G A 3610.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=21.88;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3610,387,0 chrXV 1020710 . A G 3741.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.9258;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.26;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3741,420,0 chrXV 1020911 . A G 3011 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.20;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3044,333,0 chrXV 1020933 . G A 3467.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.11;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3467,366,0 chrXV 1021484 . G A 3124 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3157,336,0 chrXV 1021815 . C T 3884.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.3124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-2.081e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3884,417,0 chrXV 1021923 . G T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.46;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3796,417,0 chrXV 1022145 . T C 3304.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.1792;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.15;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3304,360,0 chrXV 1022157 . T C 3097 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.60;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3130,339,0 chrXV 1022325 . G A 3434.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.05;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3434,366,0 chrXV 1022391 . A G 2873 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.60;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2906,315,0 chrXV 1022713 . C G 3725.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.58;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3725,402,0 chrXV 1023174 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=12.6869;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;MQRankSum=1.492;QD=22.14;ReadPosRankSum=1.708;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:3268,360,0 chrXV 1023427 . T C 3323.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=149;Dels=0.00;FS=3.343;HaplotypeScore=11.1328;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.267;QD=22.30;ReadPosRankSum=1.686;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3323,363,0 chrXV 1023697 . T C 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=4.555;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.606;QD=23.15;ReadPosRankSum=1.656;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3204,351,0 chrXV 1023944 . A T 3416.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.49;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3416,363,0 chrXV 1024047 . G T 3533.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.7943;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.09;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3533,387,0 chrXV 1024172 . T C 3224.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=1.422;QD=22.23;ReadPosRankSum=1.708;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3257,369,0 chrXV 1024262 . A G 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-0.027;QD=23.08;ReadPosRankSum=1.705;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2987,336,0 chrXV 1024298 . C T 2726 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=21.13;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2759,291,0 chrXV 1024308 . G A 2835 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;QD=20.85;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2868,306,0 chrXV 1024343 . T C 1949 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=131;Dels=0.00;FS=4.293;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=36.12;MQ0=0;MQRankSum=-1.222;QD=14.88;ReadPosRankSum=1.705;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:1982,228,0 chrXV 1024346 . C T 2068 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.06;MQ0=0;QD=16.16;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2101,222,0 chrXV 1024352 . T C 1969 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=15.15;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2002,222,0 chrXV 1024379 . T C 1900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=4.628;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;MQRankSum=-1.179;QD=15.97;ReadPosRankSum=1.703;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1933,219,0 chrXV 1024397 . C T 1750 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;QD=16.20;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1783,192,0 chrXV 1024421 . T G 2126 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=19.50;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2159,234,0 chrXV 1024543 . A G 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=-1.351;QD=22.49;ReadPosRankSum=1.618;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2080,228,0 chrXV 1024625 . C G 2410 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=24.10;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2443,270,0 chrXV 1024678 . C T 2308 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=25.64;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2341,249,0 chrXV 1024766 . A G 2802 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.75;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2835,312,0 chrXV 1025742 . G A 4563.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.40;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4563,484,0 chrXV 1025760 . G A 4335.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.68;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4335,465,0 chrXV 1025797 . C G 5096.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=13.0152;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.16;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:5096,555,0 chrXV 1026012 . T C 5564.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.30;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,223:229:99:5564,603,0 chrXV 1026039 . C T 5328.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=25.13;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:5328,568,0 chrXV 1026427 . A C 3424.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.99;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3424,378,0 chrXV 1026836 . T C 3811.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.6147;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.58;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3811,417,0 chrXV 1026977 . G C 4745.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=15.7982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4745,516,0 chrXV 1027094 . A G 4067.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,165:169:99:4067,450,0 chrXV 1028028 . G A 2658 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.91;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2691,288,0 chrXV 1028073 . C A 2907 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.44;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2940,315,0 chrXV 1028091 . A T 2920 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.81;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2953,315,0 chrXV 1028135 . T G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.688;QD=23.77;ReadPosRankSum=1.707;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3265,360,0 chrXV 1029077 . A C 2232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.566;QD=21.26;ReadPosRankSum=1.699;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2265,255,0 chrXV 1029127 . C T 2789 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.67;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2822,309,0 chrXV 1029324 . G A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4673;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.99;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3310,351,0 chrXV 1029990 . C T 4915.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.0092;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:4915,528,0 chrXV 1030315 . C A 2902 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.85;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2935,315,0 chrXV 1030332 . G T 2780 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.89;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2813,303,0 chrXV 1030847 . A G 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=196;Dels=0.00;FS=2.903;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-0.746;QD=17.19;ReadPosRankSum=2.399;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:3369,372,0 chrXV 1030941 . G A 3115 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.5464;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3148,345,0 chrXV 1031126 . T C 3018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=1.678;QD=23.58;ReadPosRankSum=1.624;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3051,342,0 chrXV 1031271 . G A 1533 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.72;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1566,171,0 chrXV 1031275 . C T 1659 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=20.74;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1692,186,0 chrXV 1031303 . A G 2174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.421;QD=19.59;ReadPosRankSum=1.670;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2207,243,0 chrXV 1031632 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8174;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.66;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3853,411,0 chrXV 1031715 . C T 5085.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.3272;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=25.94;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5085,541,0 chrXV 1031840 . A G 5140.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=234;Dels=0.00;FS=3.612;HaplotypeScore=13.7930;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.134;QD=21.97;ReadPosRankSum=1.687;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:1,231:234:99:5140,555,0 chrXV 1032017 . T C 5576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=250;Dels=0.00;FS=3.134;HaplotypeScore=20.0176;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.647;QD=22.30;ReadPosRankSum=1.718;SB=-3.152e+03 GT:AD:DP:GQ:PL 1/1:1,248:250:99:5576,624,0 chrXV 1032089 . T C 4239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=0.131;QD=21.20;ReadPosRankSum=1.506;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4239,468,0 chrXV 1032092 . A C 4009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=199;Dels=0.00;FS=2.802;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-2.177;QD=20.15;ReadPosRankSum=2.425;SB=-1.964e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:4009,450,0 chrXV 1032122 . C T 4028.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.50;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4028,426,0 chrXV 1032162 . T C 4064.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.73;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4064,444,0 chrXV 1032200 . C T 4337.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=17.5526;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.16;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4337,462,0 chrXV 1032408 . G T 3382.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.01;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3382,366,0 chrXV 1032536 . C A 6452.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:6452,685,0 chrXV 1032998 . G A 3567.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9485;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.94;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3567,381,0 chrXV 1033339 . C G 3329.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.96;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3329,363,0 chrXV 1033361 . A T 3022 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.89;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3055,330,0 chrXV 1033381 . C T 2969 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.6387;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=21.51;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3002,327,0 chrXV 1033439 . T G 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8905;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=-1.005;QD=18.71;ReadPosRankSum=1.708;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2727,309,0 chrXV 1033446 . G A 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.409;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.9222;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.115;QD=19.61;ReadPosRankSum=-0.508;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3033,308,0 chrXV 1034149 . G C 3743.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.31;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3743,414,0 chrXV 1034515 . G A 3187 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3220,342,0 chrXV 1034658 . T G 2260 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.30;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2293,252,0 chrXV 1034876 . G A 2672 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2705,294,0 chrXV 1035275 . A G 2825 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.07;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2858,318,0 chrXV 1035304 . G A 3071 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.61;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3104,330,0 chrXV 1035608 . G A 4935.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.8604;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.68;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,196:200:99:4935,529,0 chrXV 1036082 . C T 6588.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=23.1572;MLEAC=2;MLEAF=1.00;MQ=60.66;MQ0=0;QD=23.78;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,277:277:99:6588,709,0 chrXV 1036160 . T C 326.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.211;DP=172;Dels=0.00;FS=3.164;HaplotypeScore=6.0764;MLEAC=1;MLEAF=0.500;MQ=61.52;MQ0=0;MQRankSum=-3.766;QD=1.90;ReadPosRankSum=-7.393;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:146,24:172:99:356,0,624 chrXV 1036163 . T C 689.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.153;DP=170;Dels=0.00;FS=2.393;HaplotypeScore=4.5538;MLEAC=1;MLEAF=0.500;MQ=61.70;MQ0=0;MQRankSum=-0.113;QD=4.05;ReadPosRankSum=5.873;SB=-1.548e+03 GT:AD:DP:GQ:PL 0/1:16,154:170:99:719,0,188 chrXV 1036343 . A G 4657.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.398;QD=23.64;ReadPosRankSum=1.697;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:4657,516,0 chrXV 1036650 . G A 3648.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.1550;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=21.46;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3648,399,0 chrXV 1036829 . C T 3652.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.8477;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=23.56;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3652,387,0 chrXV 1037510 . A G 752 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=17.90;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:96:785,96,0 chrXV 1037514 . A C 701 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.42;MQ0=0;QD=17.10;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:90:734,90,0 chrXV 1037520 . T C 587 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.98;MQ0=0;QD=15.86;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:78:620,78,0 chrXV 1037523 . T C 515 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;QD=15.15;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:69:548,69,0 chrXV 1037540 . A T 131.06 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=7.71;SB=-5.507e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:21:164,21,0 chrXV 1037595 . G C 1376 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1409,159,0 chrXV 1037605 . G A 1743 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=19.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1776,186,0 chrXV 1037757 . A G 3054 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.24;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3087,348,0 chrXV 1038270 . C T 4122.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=24.11;SB=-2.234e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4122,439,0 chrXV 1038282 . C T 4259.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.06;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4259,450,0 chrXV 1038535 . C T 3996.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.65;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3996,426,0 chrXV 1038675 . T C 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=3.632;HaplotypeScore=17.3494;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.323;QD=22.38;ReadPosRankSum=1.709;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3380,375,0 chrXV 1038711 . T C 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=139;Dels=0.00;FS=7.943;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.876;QD=20.65;ReadPosRankSum=2.379;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2904,315,0 chrXV 1038714 . A G 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=-1.661;QD=19.90;ReadPosRankSum=1.637;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2938,324,0 chrXV 1038822 . G T 3281.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3281,351,0 chrXV 1039011 . C T 3187 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.6741;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.11;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3220,345,0 chrXV 1039398 . C T 4468.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=18.2442;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=19.95;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:4468,477,0 chrXV 1039586 . A G 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.569;QD=19.91;ReadPosRankSum=1.653;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2641,297,0 chrXV 1039607 . A T 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-0.451;QD=20.29;ReadPosRankSum=1.674;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2448,261,0 chrXV 1039781 . G A 2938 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.0396;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.72;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2971,318,0 chrXV 1039786 . A G 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=147;Dels=0.00;FS=8.217;HaplotypeScore=5.8598;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.025;QD=18.99;ReadPosRankSum=2.416;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:2824,312,0 chrXV 1039823 . A G 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=0.341;QD=17.83;ReadPosRankSum=0.974;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2493,255,0 chrXV 1039837 . A G 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.703;DP=140;Dels=0.00;FS=5.783;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.703;QD=16.29;ReadPosRankSum=2.109;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:3,136:140:99:2314,255,0 chrXV 1040520 . G T 3465.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.26;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3465,366,0 chrXV 1040775 . T C 3633.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=3.381;HaplotypeScore=15.3481;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.078;QD=22.71;ReadPosRankSum=1.667;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3633,408,0 chrXV 1040973 . C T 4477.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.07;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4477,486,0 chrXV 1041126 . A T 4640.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.1169;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.08;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4640,513,0 chrXV 1041177 . A G 5443.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=24.30;SB=-2.542e+03 GT:AD:DP:GQ:PL 1/1:0,221:224:99:5443,600,0 chrXV 1041234 . T A 4324.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.73;SB=-2.526e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4324,462,0 chrXV 1041245 . A C 3733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=185;Dels=0.00;FS=6.284;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=0.312;QD=20.18;ReadPosRankSum=2.396;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:3733,411,0 chrXV 1041472 . C G 1876 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=19.96;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1909,213,0 chrXV 1041571 . G A 1264 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1297,138,0 chrXV 1041617 . G A 1546 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.77;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1579,168,0 chrXV 1041674 . C A 2307 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.08;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2340,249,0 chrXV 1042440 . A G 5608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.997;QD=22.80;ReadPosRankSum=1.661;SB=-3.022e+03 GT:AD:DP:GQ:PL 1/1:1,244:246:99:5608,618,0 chrXV 1042653 . A G 4367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.356;DP=219;Dels=0.00;FS=9.058;HaplotypeScore=20.1171;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.342;QD=19.94;ReadPosRankSum=3.380;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:4,213:219:99:4367,495,0 chrXV 1043118 . T C 2615 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.26;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2648,291,0 chrXV 1043121 . G A 2659 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=21.62;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2692,288,0 chrXV 1043151 . A T 2318 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=18.69;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2351,258,0 chrXV 1043163 . G A 2262 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=18.69;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2295,246,0 chrXV 1043223 . A G 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=3.382;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-1.221;QD=22.48;ReadPosRankSum=1.647;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2798,309,0 chrXV 1043565 . T C 4215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=176;Dels=0.00;FS=5.676;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=0.823;QD=23.95;ReadPosRankSum=2.949;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:3,173:176:99:4215,468,0 chrXV 1043651 . C G 4291.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=15.7076;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.89;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4291,471,0 chrXV 1043801 . G A 2983 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.0115;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=17.24;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3016,339,0 chrXV 1043807 . C T 3112 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1180;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=18.75;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3145,336,0 chrXV 1043837 . A G 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.952;DP=169;Dels=0.00;FS=6.203;HaplotypeScore=7.6128;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;MQRankSum=0.516;QD=14.80;ReadPosRankSum=2.304;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:2535,282,0 chrXV 1043845 . C T 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.5037;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;MQRankSum=-1.084;QD=14.08;ReadPosRankSum=-0.111;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:2441,270,0 chrXV 1043850 . C T 2388 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.0157;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=14.30;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2421,261,0 chrXV 1044139 . C T 3155 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=24.27;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3188,345,0 chrXV 1044165 . A G 3106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.547;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.383;QD=24.08;ReadPosRankSum=1.705;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3139,345,0 chrXV 1044389 . A G 3846.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=170;Dels=0.00;FS=6.254;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.655;QD=22.62;ReadPosRankSum=2.363;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3846,426,0 chrXV 1044459 . G A 4319.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.47;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4319,457,0 chrXV 1044504 . C T 3743.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.76;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3743,399,0 chrXV 1044558 . T C 3925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=178;Dels=0.00;FS=7.038;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-1.048;QD=22.05;ReadPosRankSum=2.422;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3925,438,0 chrXV 1044791 . G T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.30;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3389,357,0 chrXV 1044792 . T C 3197 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.03;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3230,357,0 chrXV 1044907 . G C 3954.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.4992;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.99;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3954,447,0 chrXV 1045051 . A G 2936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.789;HaplotypeScore=10.5538;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=0.336;QD=21.91;ReadPosRankSum=1.706;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2969,336,0 chrXV 1045091 . T A 2829 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=19.38;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2862,306,0 chrXV 1045093 . T C 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=148;Dels=0.00;FS=6.089;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=0.014;QD=18.08;ReadPosRankSum=1.711;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:3,143:148:99:2709,297,0 chrXV 1045111 . T C 2707 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.05;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2740,300,0 chrXV 1045263 . T A 3196 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=5.1775;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=20.36;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3229,366,0 chrXV 1045264 . A T 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=158;Dels=0.00;FS=6.620;HaplotypeScore=5.1775;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;MQRankSum=-1.128;QD=20.42;ReadPosRankSum=2.387;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3260,369,0 chrXV 1045298 . C G 3655.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=21.25;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,169:172:99:3655,402,0 chrXV 1045483 . C T 3340.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=20.62;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3340,363,0 chrXV 1045508 . T G 2329 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=16.64;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2362,258,0 chrXV 1045603 . A T 209.01 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.09;MQ0=0;QD=2.40;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:27:242,27,0 chrXV 1045615 . G A 667 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=6.18;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:75:700,75,0 chrXV 1045703 . A C 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.296;DP=142;Dels=0.00;FS=8.957;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.582;QD=23.45;ReadPosRankSum=3.396;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:4,136:142:99:3330,363,0 chrXV 1046363 . A G 4489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=3.370;HaplotypeScore=12.5619;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.102;QD=25.22;ReadPosRankSum=1.712;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:4489,486,0 chrXV 1046564 . A G 4019.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.8968;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.07;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4019,447,0 chrXV 1046921 . A G 2420 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.96;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2453,270,0 chrXV 1047359 . C A 3954.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=13.7543;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.40;SB=-2.181e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3954,429,0 chrXV 1047398 . T A 3586.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.44;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3586,375,0 chrXV 1047512 . C T 4093.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.3293;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.37;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,179:183:99:4093,447,0 chrXV 1047701 . G A 4581.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=24.50;SB=-2.444e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4581,489,0 chrXV 1047731 . G A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.01;FS=0.000;HaplotypeScore=5.9025;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=20.93;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3662,390,0 chrXV 1047746 . T C 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=158;Dels=0.00;FS=3.038;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=0.180;QD=19.24;ReadPosRankSum=2.403;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3073,336,0 chrXV 1047779 . C T 2946 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.91;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2979,318,0 chrXV 1047912 . C T 4239.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=19.2101;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=23.55;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:4239,453,0 chrXV 1047957 . A G 3749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;MQRankSum=-0.150;QD=23.14;ReadPosRankSum=1.689;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3749,417,0 chrXV 1047968 . C T 3550.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=23.36;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3550,390,0 chrXV 1048033 . A G 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=158;Dels=0.00;FS=3.035;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;MQRankSum=1.003;QD=21.74;ReadPosRankSum=2.341;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3435,381,0 chrXV 1048050 . C T 3451.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=23.32;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3451,378,0 chrXV 1048059 . T C 3468.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=22.23;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3468,375,0 chrXV 1048103 . G A 3164 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=21.09;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3197,348,0 chrXV 1048151 . A G 2963 SnpCluster AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=16.46;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2996,339,0 chrXV 1048158 . T G 2773 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=39.73;MQ0=0;MQRankSum=-1.279;QD=15.58;ReadPosRankSum=1.693;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:2806,312,0 chrXV 1048159 . T C 2727 SnpCluster AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=39.44;MQ0=0;QD=15.49;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:2760,315,0 chrXV 1048193 . G A 2334 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=38.64;MQ0=0;QD=13.73;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:2367,255,0 chrXV 1048196 . A G 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=3.647;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=39.11;MQ0=0;MQRankSum=-1.358;QD=12.56;ReadPosRankSum=1.712;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:99:2256,255,0 chrXV 1048227 . C A 2488 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=16.16;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2521,267,0 chrXV 1048427 . T C 1429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=95;Dels=0.00;FS=9.451;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;MQRankSum=-1.087;QD=15.04;ReadPosRankSum=2.397;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:2,92:95:99:1462,165,0 chrXV 1048437 . C T 1604 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=17.06;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1637,183,0 chrXV 1048488 . C T 2062 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.09;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2095,222,0 chrXV 1048836 . T C 3419.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=19.43;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3419,387,0 chrXV 1048841 . G A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=19.94;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3510,381,0 chrXV 1048868 . C T 3131 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=18.10;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3164,345,0 chrXV 1048879 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=16.94;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2946,309,0 chrXV 1048886 . A G 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;MQRankSum=-0.245;QD=16.71;ReadPosRankSum=1.712;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:2874,309,0 chrXV 1048953 . T C 4243.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.624;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.704;QD=23.31;ReadPosRankSum=3.297;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:5,177:182:99:4243,456,0 chrXV 1048990 . T C 6106.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=14.4200;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.063;QD=23.95;ReadPosRankSum=2.941;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:3,251:255:99:6106,675,0 chrXV 1049114 . G A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.4296;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=23.57;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4242,459,0 chrXV 1049400 . C T 2923 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.34;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2956,315,0 chrXV 1049401 . C T 2920 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.47;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2953,315,0 chrXV 1049580 . A G 4876.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.0602;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.90;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4876,537,0 chrXV 1049756 . T C 5732.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=255;Dels=0.00;FS=10.617;HaplotypeScore=28.5085;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.249;QD=22.48;ReadPosRankSum=2.965;SB=-2.936e+03 GT:AD:DP:GQ:PL 1/1:3,251:255:99:5732,630,0 chrXV 1049902 . T C 4785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=204;Dels=0.00;FS=3.027;HaplotypeScore=10.4741;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.530;QD=23.46;ReadPosRankSum=2.389;SB=-2.638e+03 GT:AD:DP:GQ:PL 1/1:2,201:204:99:4785,519,0 chrXV 1050053 . A T 4663.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.9354;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.42;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4663,498,0 chrXV 1050066 . T G 4232.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=215;Dels=0.00;FS=3.029;HaplotypeScore=5.8615;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=1.451;QD=19.68;ReadPosRankSum=2.381;SB=-2.739e+03 GT:AD:DP:GQ:PL 1/1:2,212:215:99:4232,474,0 chrXV 1050311 . G T 3890.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.2285;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.80;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3890,420,0 chrXV 1050335 . C T 3587.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.48;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3587,381,0 chrXV 1050536 . C T 4264.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=21.2629;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.68;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4264,456,0 chrXV 1050809 . T C 5724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=286;Dels=0.00;FS=3.603;HaplotypeScore=18.0737;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-0.590;QD=20.01;ReadPosRankSum=1.695;SB=-3.135e+03 GT:AD:DP:GQ:PL 1/1:1,281:286:99:5724,627,0 chrXV 1050821 . A G 5397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=5.6121;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=-0.764;QD=19.84;ReadPosRankSum=1.707;SB=-2.771e+03 GT:AD:DP:GQ:PL 1/1:1,271:272:99:5397,603,0 chrXV 1051096 . C G 2900 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0557;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=20.57;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2933,321,0 chrXV 1051162 . G A 3558.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6453;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.88;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3558,387,0 chrXV 1051220 . T C 3493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-1.429;QD=19.09;ReadPosRankSum=1.694;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3493,381,0 chrXV 1051227 . A G 3897.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=19.78;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3897,441,0 chrXV 1051260 . G A 5003.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=21.11;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,233:237:99:5003,526,0 chrXV 1051284 . C T 5622.01 PASS AC=2;AF=1.00;AN=2;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=8.6071;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.08;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,280:280:99:5622,612,0 chrXV 1051487 . A G 6680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=326;Dels=0.00;FS=2.730;HaplotypeScore=20.3963;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.824;QD=20.49;ReadPosRankSum=2.404;SB=-3.090e+03 GT:AD:DP:GQ:PL 1/1:2,324:326:99:6680,747,0 chrXV 1051607 . G A 4752.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.4491;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.88;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4752,496,0 chrXV 1051637 . C T 4664.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.53;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4664,493,0 chrXV 1051694 . C T 5106.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=21.3032;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.91;SB=-2.893e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5106,546,0 chrXV 1051814 . G T 4528.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=7.4836;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.83;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4528,492,0 chrXV 1051958 . C G 5321.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=16.4386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,220:225:99:5321,603,0 chrXV 1051994 . C T 5690.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=28.7937;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.01;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:5690,604,0 chrXV 1052051 . T A 5702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=286;Dels=0.00;FS=4.802;HaplotypeScore=22.8515;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.561;QD=19.94;ReadPosRankSum=1.488;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:1,285:286:99:5702,654,0 chrXV 1052288 . A C 6722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=28.0676;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.057;QD=21.75;ReadPosRankSum=1.698;SB=-3.763e+03 GT:AD:DP:GQ:PL 1/1:1,307:309:99:6722,741,0 chrXV 1052408 . G A 5205.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5205,562,0 chrXV 1052450 . C T 6373.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=21.2397;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-3.395e+03 GT:AD:DP:GQ:PL 1/1:0,286:288:99:6373,688,0 chrXV 1052591 . C T 5371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=216;Dels=0.00;FS=3.939;HaplotypeScore=13.1086;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.391;QD=24.87;ReadPosRankSum=1.342;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:1,212:216:99:5371,554,0 chrXV 1052746 . G A 4025.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=20.64;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4025,438,0 chrXV 1052839 . C T 3045 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.0324;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.07;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3078,330,0 chrXV 1052900 . A T 2805 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1067;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.77;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2838,306,0 chrXV 1053054 . C T 3131 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=24.27;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3164,342,0 chrXV 1053103 . A T 3188 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=24.91;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3221,348,0 chrXV 1053179 . G A 2208 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=23.24;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2241,243,0 chrXV 1053286 . A G 2150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;MQRankSum=-1.599;QD=20.67;ReadPosRankSum=1.699;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2183,240,0 chrXV 1053290 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=21.33;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2123,234,0 chrXV 1053365 . G A 917 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.04;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.26;MQ0=0;QD=17.63;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:950,102,0 chrXV 1053366 . C T 934 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.04;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.26;MQ0=0;QD=17.96;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:967,102,0 chrXV 1053371 . C T 852 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.04;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:96:885,96,0 chrXV 1053378 . T C 845 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.24;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:878,96,0 chrXV 1053380 . G T 872 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.80;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:905,96,0 chrXV 1053390 . T C 713 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.20;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:81:746,81,0 chrXV 1053394 . G A 709 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.76;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:78:742,78,0 chrXV 1053408 . C T 558 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=13.95;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:63:591,63,0 chrXV 1053414 . T A 582 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.05;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=13.86;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:66:615,66,0 chrXV 1053476 . G T 842 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;QD=21.05;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:875,93,0 chrXV 1053584 . T A 160.06 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=11.43;SB=-5.707e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:21:193,21,0 chrXV 1053586 . T G 156.06 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=12.00;SB=-5.107e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:21:189,21,0 chrXV 1053595 . C T 125.13 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.97;MQ0=0;QD=8.94;SB=-1.361e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:18:158,18,0 chrXV 1053727 . T C 1127 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;QD=18.48;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1160,129,0 chrXV 1053732 . G A 1037 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.50;MQ0=0;QD=17.88;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1070,120,0 chrXV 1053748 . G C 840 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.32;MQ0=0;QD=14.00;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:96:873,96,0 chrXV 1053751 . C A 858 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.01;MQ0=0;QD=13.62;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:96:891,96,0 chrXV 1053769 . C T 441 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=31.96;MQ0=0;QD=8.02;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:54:474,54,0 chrXV 1053770 . G A 483 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=31.17;MQ0=0;QD=8.78;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:57:516,57,0 chrXV 1053882 . G A 2389 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=25.15;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2422,255,0 chrXV 1053942 . G A 2334 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=19.95;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2367,255,0 chrXV 1054069 . A G 2559 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=22.85;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2592,288,0 chrXV 1054073 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=23.01;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2472,270,0 chrXV 1054123 . G A 2217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.8932;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.822;QD=22.39;ReadPosRankSum=1.102;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2250,252,0 chrXV 1054210 . C T 40.97 filter AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=96.2627;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=0.37;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:9:73,9,0 chrXV 1054263 . A G 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=114;Dels=0.00;FS=3.371;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=0.506;QD=20.39;ReadPosRankSum=1.701;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2357,258,0 chrXV 1054294 . A G 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=101;Dels=0.00;FS=11.619;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=0.570;QD=21.34;ReadPosRankSum=2.931;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:3,98:101:99:2188,243,0 chrXV 1054305 . A G 2209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=4.202;HaplotypeScore=6.0332;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-0.173;QD=22.09;ReadPosRankSum=1.663;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2242,249,0 chrXV 1054347 . G C 1563 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=19.54;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1596,174,0 chrXV 1054371 . G A 1393 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.57;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1426,150,0 chrXV 1054416 . A G 1989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=1.076;QD=20.94;ReadPosRankSum=1.659;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2022,222,0 chrXV 1054468 . C T 2908 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.08;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2941,321,0 chrXV 1054533 . T G 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.980;QD=24.74;ReadPosRankSum=1.699;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2655,294,0 chrXV 1054570 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=24.16;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1990,213,0 chrXV 1054799 . A G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=3.106;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=-1.176;QD=20.95;ReadPosRankSum=1.656;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2903,318,0 chrXV 1054802 . G A 2883 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=21.36;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2916,312,0 chrXV 1054920 . G A 2945 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=24.14;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2978,312,0 chrXV 1054937 . G A 2769 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=22.70;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2802,306,0 chrXV 1054981 . T G 1946 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=15.57;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1979,222,0 chrXV 1054982 . T G 2008 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=16.19;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2041,225,0 chrXV 1055015 . A G 2327 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=18.32;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2360,267,0 chrXV 1055044 . C T 3092 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.5917;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=20.34;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3125,348,0 chrXV 1055076 . G C 3910.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=24.59;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3910,432,0 chrXV 1055157 . A G 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=3.476;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;MQRankSum=0.059;QD=22.08;ReadPosRankSum=1.703;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2661,294,0 chrXV 1055169 . T A 2572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;MQRankSum=-0.782;QD=22.76;ReadPosRankSum=1.701;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2605,279,0 chrXV 1055197 . G A 2793 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=22.71;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2826,303,0 chrXV 1055227 . T A 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=3.650;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=-0.308;QD=20.88;ReadPosRankSum=1.685;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3082,336,0 chrXV 1055325 . C T 2980 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=13.6557;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.75;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3013,333,0 chrXV 1055396 . G A 2627 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=19.04;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2660,285,0 chrXV 1055484 . G A 3221.92 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.37;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3255,360,0 chrXV 1055524 . T C 3076 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.72;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3109,339,0 chrXV 1055525 . T C 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-1.507;QD=19.19;ReadPosRankSum=1.665;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,153:156:99:3027,336,0 chrXV 1055690 . A G 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.752;DP=160;Dels=0.00;FS=5.806;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=0.344;QD=21.63;ReadPosRankSum=2.816;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:3,156:160:99:3460,375,0 chrXV 1055801 . G A 3453.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.85;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3453,369,0 chrXV 1055829 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=20.09;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3516,381,0 chrXV 1055838 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.6706;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.33;SB=-2.032e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3668,393,0 chrXV 1055878 . G A 3992.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.58;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:3992,432,0 chrXV 1055920 . A G 4605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=184;Dels=0.00;FS=8.187;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-1.795;QD=25.03;ReadPosRankSum=2.383;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:4605,510,0 chrXV 1056175 . A C 3506.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=21.25;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3506,387,0 chrXV 1056183 . T C 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.617;QD=20.56;ReadPosRankSum=1.712;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3578,396,0 chrXV 1056258 . C T 3296.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.5673;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=21.54;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3296,360,0 chrXV 1056279 . C T 2925 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.85;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2958,321,0 chrXV 1056327 . C T 2566 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.69;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2599,285,0 chrXV 1056358 . A G 3365.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.936;QD=22.74;ReadPosRankSum=1.662;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3365,366,0 chrXV 1056426 . C T 3793.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.41;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3793,408,0 chrXV 1056544 . T C 3483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.457;QD=23.07;ReadPosRankSum=1.686;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3483,381,0 chrXV 1056618 . T C 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=134;Dels=0.00;FS=2.839;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.322;QD=21.22;ReadPosRankSum=2.413;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2876,324,0 chrXV 1056819 . T C 4054.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.245;QD=21.80;ReadPosRankSum=1.713;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:1,184:186:99:4054,450,0 chrXV 1056939 . T C 4300.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=214;Dels=0.00;FS=3.416;HaplotypeScore=10.6419;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=0.512;QD=20.09;ReadPosRankSum=1.065;SB=-2.430e+03 GT:AD:DP:GQ:PL 1/1:1,212:214:99:4300,474,0 chrXV 1056959 . A C 4620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=224;Dels=0.00;FS=2.987;HaplotypeScore=14.3265;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=0.923;QD=20.63;ReadPosRankSum=2.394;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:2,220:224:99:4620,498,0 chrXV 1056993 . C T 5297.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.8137;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.44;SB=-3.047e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5297,568,0 chrXV 1057081 . T C 6107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=16.5618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.828;QD=24.14;ReadPosRankSum=1.705;SB=-3.118e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:6107,687,0 chrXV 1057371 . G A 4887.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=9.6349;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.42;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4887,531,0 chrXV 1057436 . T C 4680.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.9511;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.987;QD=23.28;ReadPosRankSum=1.680;SB=-2.492e+03 GT:AD:DP:GQ:PL 1/1:1,199:201:99:4680,519,0 chrXV 1057468 . A T 3802.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=187;Dels=0.00;FS=2.973;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.178;QD=20.33;ReadPosRankSum=2.318;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3802,414,0 chrXV 1057474 . G C 3817.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=20.74;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3817,420,0 chrXV 1057489 . A G 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=171;Dels=0.00;FS=5.680;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=1.065;QD=19.65;ReadPosRankSum=2.877;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:3,168:171:99:3360,372,0 chrXV 1057536 . A G 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=1.078;QD=18.78;ReadPosRankSum=1.659;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2737,303,0 chrXV 1057626 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.83;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3384,369,0 chrXV 1057668 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.0946;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.42;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3172,339,0 chrXV 1057751 . C G 2196 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.87;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2229,243,0 chrXV 1057752 . A G 2212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.358;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=0.324;QD=24.31;ReadPosRankSum=1.694;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2245,243,0 chrXV 1057907 . G A 2566 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.51;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2599,285,0 chrXV 1057969 . A T 766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=75;Dels=0.00;FS=1.586;HaplotypeScore=6.5154;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-0.740;QD=10.21;ReadPosRankSum=2.070;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:7,68:75:74:799,74,0 chrXV 1058015 . A T 1167 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;QD=14.23;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1200,126,0 chrXV 1058016 . A T 1159 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=83;Dels=0.00;FS=9.544;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=42.87;MQ0=0;MQRankSum=-1.411;QD=13.96;ReadPosRankSum=2.361;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1192,126,0 chrXV 1058024 . A C 1194 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=13.72;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1227,138,0 chrXV 1058063 . G C 1713 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=15.86;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1746,189,0 chrXV 1058065 . T C 1714 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=15.87;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1747,189,0 chrXV 1058190 . T C 2963 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=24.09;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2996,327,0 chrXV 1058326 . A T 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=-0.252;QD=25.03;ReadPosRankSum=1.701;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2786,297,0 chrXV 1058395 . T A 43.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.535;DP=132;Dels=0.00;FS=1.128;HaplotypeScore=126.7558;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=0.878;QD=0.33;ReadPosRankSum=-4.834;SB=-1.597e+01 GT:AD:DP:GQ:PL 1/1:119,13:132:9:76,9,0 chrXV 1058421 . T A 2950 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=19.80;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2983,330,0 chrXV 1058494 . G A 3495.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=25.33;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3495,369,0 chrXV 1058538 . A G 3728.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.7047;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=24.69;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3728,405,0 chrXV 1058568 . A G 4052.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=23.42;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4052,447,0 chrXV 1058627 . T G 4062.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=-1.457;QD=22.82;ReadPosRankSum=1.712;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:4062,459,0 chrXV 1058644 . C T 3550.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=20.64;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3550,384,0 chrXV 1058657 . G A 3376.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.10;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3376,349,0 chrXV 1058775 . T C 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=3.522;HaplotypeScore=4.3443;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=1.347;QD=20.53;ReadPosRankSum=1.668;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:1,161:165:99:3388,378,0 chrXV 1058791 . A G 3604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=169;Dels=0.00;FS=5.640;HaplotypeScore=3.9377;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.838;QD=21.33;ReadPosRankSum=2.946;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:3,165:169:99:3604,396,0 chrXV 1058868 . G A 2509 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=18.31;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2542,279,0 chrXV 1058977 . G C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.3894;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.46;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3332,366,0 chrXV 1059193 . A G 3105 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.17;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,130:134:99:3138,348,0 chrXV 1059223 . T C 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.293;QD=24.54;ReadPosRankSum=1.680;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3313,366,0 chrXV 1059320 . G A 3494.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.40;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3494,372,0 chrXV 1059487 . C T 3648.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.6137;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.33;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3648,393,0 chrXV 1059502 . T C 3849.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.188;DP=197;Dels=0.00;FS=2.769;HaplotypeScore=15.2983;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.405;QD=19.54;ReadPosRankSum=2.400;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:3849,426,0 chrXV 1059558 . A G 5681.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=257;Dels=0.00;FS=13.318;HaplotypeScore=15.9036;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.451;QD=22.11;ReadPosRankSum=2.420;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:2,251:257:99:5681,624,0 chrXV 1059636 . A G 6601.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=297;Dels=0.00;FS=5.667;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=1.004;QD=22.23;ReadPosRankSum=1.709;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,294:297:99:6601,759,0 chrXV 1059725 . T C 7804.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=383;Dels=0.00;FS=5.770;HaplotypeScore=5.9386;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.592;QD=20.38;ReadPosRankSum=2.940;SB=-4.104e+03 GT:AD:DP:GQ:PL 1/1:3,378:383:99:7804,870,0 chrXV 1059727 . C G 7969.01 filter AC=2;AF=1.00;AN=2;DP=378;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=21.08;SB=-4.353e+03 GT:AD:DP:GQ:PL 1/1:0,375:378:99:7969,871,0 chrXV 1059872 . C A 5289.01 PASS AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=12.8587;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=17.40;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,302:304:99:5289,573,0 chrXV 1059890 . C A 5324.01 PASS AC=2;AF=1.00;AN=2;DP=309;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=17.23;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:0,309:309:99:5324,585,0 chrXV 1060028 . C A 2365 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.1240;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.07;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2398,261,0 chrXV 1060089 . A G 1446 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=20.08;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1479,162,0 chrXV 1060103 . G A 1192 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.07;MQ0=0;QD=19.54;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1225,132,0 chrXV 1060135 . C T 839 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;QD=19.07;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:96:872,96,0 chrXV 1060136 . A G 876 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;QD=19.91;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:96:909,96,0 chrXV 1060197 . T C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;QD=3.40;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:55,6,0 chrXV 1060200 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;QD=3.26;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:6:54,6,0 chrXV 1060239 . T C 359 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.12;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:42:392,42,0 chrXV 1060262 . G A 873 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.29;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,39:41:99:906,99,0 chrXV 1060419 . C T 3174 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.02;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3207,348,0 chrXV 1060513 . G C 6602.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=18.0887;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.25;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,284:284:99:6602,732,0 chrXV 1060654 . G A 7327.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=18.1537;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.07;SB=-3.126e+03 GT:AD:DP:GQ:PL 1/1:0,329:332:99:7327,799,0 chrXV 1060732 . A G 6682.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.923;DP=309;Dels=0.00;FS=18.757;HaplotypeScore=35.0787;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=1.789;QD=21.62;ReadPosRankSum=5.071;SB=-3.114e+03 GT:AD:DP:GQ:PL 1/1:9,299:309:99:6682,741,0 chrXV 1060864 . G A 3795.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.0835;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.32;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3795,408,0 chrXV 1061020 . A G 3665.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.0231;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.14;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3665,399,0 chrXV 1061269 . A G 2660 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.96;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2693,297,0 chrXV 1061340 . A T 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.286;QD=22.70;ReadPosRankSum=1.665;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2417,270,0 chrXV 1061362 . T C 2558 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.44;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2591,285,0 chrXV 1061495 . T C 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.369;DP=140;Dels=0.00;FS=8.783;HaplotypeScore=9.0476;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=0.628;QD=19.54;ReadPosRankSum=3.344;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:4,134:140:99:2769,303,0 chrXV 1061510 . G A 2911 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.40;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2944,315,0 chrXV 1061596 . G A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.48;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3475,387,0 chrXV 1061626 . A G 3296.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=160;Dels=0.00;FS=5.024;HaplotypeScore=13.1820;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.601;QD=20.60;ReadPosRankSum=1.601;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3296,372,0 chrXV 1061666 . A G 3311.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.82;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3311,363,0 chrXV 1062056 . G A 4874.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.0958;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.13;SB=-2.699e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4874,517,0 chrXV 1062226 . G A 5362.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.71;SB=-2.360e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5362,565,0 chrXV 1062245 . G A 5026.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.0513;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.44;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,222:224:99:5026,532,0 chrXV 1062335 . T C 6347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.380;DP=280;Dels=0.00;FS=8.962;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-1.031;QD=22.67;ReadPosRankSum=3.304;SB=-3.456e+03 GT:AD:DP:GQ:PL 1/1:4,274:280:99:6347,696,0 chrXV 1062355 . C T 6080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.719;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=9.3913;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=1.080;QD=22.44;ReadPosRankSum=1.528;SB=-3.600e+03 GT:AD:DP:GQ:PL 1/1:1,270:271:99:6080,646,0 chrXV 1062547 . C T 5509.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=20.95;SB=-3.408e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:5509,603,0 chrXV 1062549 . C A 5760.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=21.49;SB=-3.456e+03 GT:AD:DP:GQ:PL 1/1:0,265:268:99:5760,616,0 chrXV 1062786 . C T 4018.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=21.26;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4018,447,0 chrXV 1062793 . T C 4047.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=189;Dels=0.00;FS=12.009;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=-0.263;QD=21.41;ReadPosRankSum=2.877;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:3,184:189:99:4047,447,0 chrXV 1062865 . G A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.17;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3880,423,0 chrXV 1063146 . C T 4670.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=14.1394;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.13;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4670,513,0 chrXV 1063177 . C T 4471.01 SnpCluster AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=19.44;SB=-2.484e+03 GT:AD:DP:GQ:PL 1/1:0,229:230:99:4471,477,0 chrXV 1063183 . G A 4177.01 SnpCluster AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=18.40;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4177,439,0 chrXV 1063186 . G A 4188.01 SnpCluster AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=17.82;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:4188,447,0 chrXV 1063375 . A G 6491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=18.9925;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-1.530;QD=23.60;ReadPosRankSum=1.707;SB=-3.330e+03 GT:AD:DP:GQ:PL 1/1:1,273:275:99:6491,714,0 chrXV 1063459 . G A 5145.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=14.2397;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.99;SB=-2.758e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5145,564,0 chrXV 1063605 . G C 3843.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=14.6972;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.35;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3843,423,0 chrXV 1063841 . A G 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.2567;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=0.470;QD=19.97;ReadPosRankSum=1.703;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2390,264,0 chrXV 1063847 . G A 2467 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=21.45;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2500,273,0 chrXV 1063979 . A T 3634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=167;Dels=0.00;FS=4.032;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-1.691;QD=21.76;ReadPosRankSum=1.691;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3634,396,0 chrXV 1063994 . T A 4006.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=178;Dels=0.00;FS=2.806;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.631;QD=22.51;ReadPosRankSum=2.380;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4006,421,0 chrXV 1064163 . G A 4030.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.14;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4030,435,0 chrXV 1064229 . A G 4923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=216;Dels=0.00;FS=5.290;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.668;QD=22.79;ReadPosRankSum=2.949;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:3,212:216:99:4923,543,0 chrXV 1064267 . T C 4445.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=196;Dels=0.00;FS=7.707;HaplotypeScore=16.5993;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.044;QD=22.68;ReadPosRankSum=2.425;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4445,492,0 chrXV 1064342 . G A 4168.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:4168,439,0 chrXV 1064897 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3267,354,0 chrXV 1064991 . G T 2367 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.64;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2400,258,0 chrXV 1065166 . A G 3100 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3133,351,0 chrXV 1065443 . A G 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=115;Dels=0.00;FS=4.096;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.475;QD=22.86;ReadPosRankSum=1.701;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2662,294,0 chrXV 1065522 . A G 2887 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2920,321,0 chrXV 1065778 . T C 2801 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7953;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=22.41;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2834,315,0 chrXV 1065809 . A G 2399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=122;Dels=0.00;FS=2.753;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-0.554;QD=19.66;ReadPosRankSum=2.288;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2432,267,0 chrXV 1065908 . G A 2719 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=18.8770;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;QD=17.21;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2752,291,0 chrXV 1065927 . G T 340.76 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.105;DP=165;Dels=0.00;FS=13.234;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=37.33;MQ0=0;MQRankSum=-1.585;QD=2.07;ReadPosRankSum=-3.596;SB=1.24 GT:AD:DP:GQ:PL 1/1:146,19:165:6:372,6,0 chrXV 1065928 . A G 320.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.926;DP=169;Dels=0.00;FS=13.131;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=0;MQRankSum=-2.472;QD=1.89;ReadPosRankSum=-3.531;SB=-1.127e+00 GT:AD:DP:GQ:PL 1/1:150,19:169:1:349,1,0 chrXV 1065933 . G T 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.967;DP=143;Dels=0.00;FS=17.833;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=31.40;MQ0=0;MQRankSum=-2.089;QD=0.15;ReadPosRankSum=5.741;SB=-1.247e+03 GT:AD:DP:GQ:PL 0/1:13,130:143:51:51,0,171 chrXV 1065934 . A G 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.553;DP=141;Dels=0.00;FS=22.731;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=30.97;MQ0=0;MQRankSum=0.787;QD=0.21;ReadPosRankSum=5.626;SB=-1.320e+03 GT:AD:DP:GQ:PL 0/1:12,129:141:59:59,0,81 chrXV 1065937 . T C 97.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.374;DP=146;Dels=0.00;FS=5.264;HaplotypeScore=2.7622;MLEAC=2;MLEAF=1.00;MQ=32.32;MQ0=0;MQRankSum=-3.241;QD=0.67;ReadPosRankSum=3.398;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:4,141:146:15:130,15,0 chrXV 1065976 . A G 1703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;MQRankSum=-1.293;QD=11.35;ReadPosRankSum=1.709;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:1736,195,0 chrXV 1065987 . T C 1450 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.37;MQ0=0;QD=9.86;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:1483,162,0 chrXV 1065998 . C T 1468 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.81;MQ0=0;QD=10.27;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:1501,162,0 chrXV 1066016 . T C 1486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.87;MQ0=0;MQRankSum=-1.391;QD=10.46;ReadPosRankSum=1.708;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:1519,168,0 chrXV 1066080 . A G 1450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=6.535;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;MQRankSum=0.835;QD=10.98;ReadPosRankSum=2.412;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:1483,165,0 chrXV 1066106 . T G 2276 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=41.21;MQ0=0;QD=15.48;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2309,255,0 chrXV 1066235 . T A 3546.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;QD=22.88;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3546,387,0 chrXV 1066247 . T C 3413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=3.487;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;MQRankSum=-0.157;QD=21.74;ReadPosRankSum=1.597;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:1,153:157:99:3413,378,0 chrXV 1066448 . T C 2441 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.86;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2474,273,0 chrXV 1066554 . C G 2154 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.41;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2187,243,0 chrXV 1066877 . T C 4219.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4219,468,0 chrXV 1066963 . G A 3992.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.7316;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.43;SB=-2.098e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3992,426,0 chrXV 1067351 . G A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=24.20;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3252,348,0 chrXV 1067607 . T A 2321 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.50;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2354,255,0 chrXV 1067609 . C T 2208 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=3.7317;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=19.03;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2241,246,0 chrXV 1067625 . G A 1897 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4471;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=18.42;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1930,213,0 chrXV 1067744 . C T 3082 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3115,327,0 chrXV 1068152 . C A 2788 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=21.61;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2821,303,0 chrXV 1068167 . A G 2659 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.62;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2692,300,0 chrXV 1068179 . C T 2777 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.40;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2810,297,0 chrXV 1068242 . T C 2577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.699;QD=22.03;ReadPosRankSum=1.702;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,113:117:99:2610,288,0 chrXV 1068501 . G A 2437 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=22.99;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2470,258,0 chrXV 1068527 . C T 1717 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=19.29;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1750,186,0 chrXV 1068530 . A G 1576 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.68;MQ0=0;QD=18.33;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1609,180,0 chrXV 1068559 . A T 1276 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.48;MQ0=0;QD=15.56;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1309,138,0 chrXV 1068617 . A G 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=1.320;QD=20.90;ReadPosRankSum=1.705;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2687,291,0 chrXV 1068656 . C A 3445.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.81;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3445,378,0 chrXV 1068711 . A C 3156 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.7932;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=22.38;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3189,351,0 chrXV 1068722 . G A 2901 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.8583;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;QD=21.33;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2934,324,0 chrXV 1068730 . A G 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=143;Dels=0.00;FS=8.130;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;MQRankSum=-0.632;QD=20.02;ReadPosRankSum=2.380;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:2896,318,0 chrXV 1068829 . A C 3067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.682;QD=22.22;ReadPosRankSum=1.707;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3100,342,0 chrXV 1068912 . A G 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=134;Dels=0.00;FS=2.904;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.523;QD=22.51;ReadPosRankSum=2.376;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3049,333,0 chrXV 1068930 . T C 3147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=3.482;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-1.070;QD=23.14;ReadPosRankSum=1.656;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3180,354,0 chrXV 1069076 . A G 2955 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.22;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2988,327,0 chrXV 1069113 . G A 4345.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=26.49;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4345,457,0 chrXV 1069372 . C T 2914 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=20.96;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2947,315,0 chrXV 1069379 . C T 2901 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=22.15;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2934,312,0 chrXV 1069504 . A G 2972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.220;QD=23.59;ReadPosRankSum=1.677;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3005,324,0 chrXV 1069590 . A T 2145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.282;DP=121;Dels=0.00;FS=10.306;HaplotypeScore=4.7112;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;MQRankSum=-0.358;QD=17.73;ReadPosRankSum=3.238;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:4,117:121:99:2178,249,0 chrXV 1069591 . T A 2172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.091;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4999;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-0.433;QD=17.80;ReadPosRankSum=2.208;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2205,252,0 chrXV 1069608 . C G 3009 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.2564;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.29;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3042,336,0 chrXV 1069696 . C T 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.544;DP=145;Dels=0.00;FS=14.797;HaplotypeScore=8.9978;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=2;MQRankSum=5.928;QD=22.10;ReadPosRankSum=-0.156;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:15,130:145:99:3237,312,0 chrXV 1069811 . G A 2753.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;DP=194;Dels=0.00;FS=141.789;HaplotypeScore=8.3372;MLEAC=1;MLEAF=0.500;MQ=49.40;MQ0=7;MQRankSum=1.616;QD=14.19;ReadPosRankSum=0.052;SB=-6.700e+02 GT:AD:DP:GQ:PL 0/1:44,150:194:99:2783,0,383 chrXV 1069827 . T C 336.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;DP=201;Dels=0.00;FS=133.606;HaplotypeScore=19.2779;MLEAC=1;MLEAF=0.500;MQ=48.75;MQ0=7;MQRankSum=2.316;QD=1.67;ReadPosRankSum=-2.815;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:155,43:201:99:366,0,2672 chrXV 1070028 . C T 1597.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.845;DP=202;Dels=0.00;FS=6.825;HaplotypeScore=7.2494;MLEAC=1;MLEAF=0.500;MQ=46.82;MQ0=22;MQRankSum=-0.120;QD=7.91;ReadPosRankSum=-0.485;SB=-6.630e+02 GT:AD:DP:GQ:PL 0/1:96,102:202:99:1627,0,1389 chrXV 1070035 . G A 3152 filter AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=22;QD=17.61;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3185,342,0 chrXV 1070053 . T C 1902 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.037;DP=154;Dels=0.00;FS=24.040;HaplotypeScore=3.4409;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=22;MQRankSum=-1.065;QD=12.35;ReadPosRankSum=4.069;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:6,148:154:99:1935,219,0 chrXV 1070056 . A G 1863 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.2296;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=21;MQRankSum=0.839;QD=12.42;ReadPosRankSum=1.678;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,148:150:99:1896,222,0 chrXV 1070065 . A G 1755 filter AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.7642;MLEAC=2;MLEAF=1.00;MQ=42.88;MQ0=20;QD=12.63;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:1788,195,0 chrXV 1070275 . T C 1962 filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=95.2110;MLEAC=2;MLEAF=1.00;MQ=31.91;MQ0=15;QD=16.77;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,115:117:99:1995,222,0 chrXV 1070286 . A G 810.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.753;DP=127;Dels=0.00;FS=3.750;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.27;MQ0=13;MQRankSum=1.562;QD=6.38;ReadPosRankSum=0.286;SB=-2.760e+02 GT:AD:DP:GQ:PL 0/1:64,63:127:99:840,0,836 chrXV 1070343 . C T 1311.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.451;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=16.9708;MLEAC=1;MLEAF=0.500;MQ=27.89;MQ0=4;MQRankSum=-1.850;QD=8.63;ReadPosRankSum=0.359;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,79:151:99:1341,0,949 chrXV 1070346 . T C 1192.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.410;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.9325;MLEAC=1;MLEAF=0.500;MQ=27.76;MQ0=4;MQRankSum=-0.971;QD=7.79;ReadPosRankSum=0.625;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,79:153:99:1222,0,1063 chrXV 1070355 . G A 1296.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.203;DP=153;Dels=0.01;FS=2.036;HaplotypeScore=12.5234;MLEAC=1;MLEAF=0.500;MQ=27.36;MQ0=3;MQRankSum=-0.589;QD=8.47;ReadPosRankSum=-0.814;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,82:152:99:1326,0,919 chrXV 1070364 . A G 870.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;DP=152;Dels=0.00;FS=1.606;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.65;MQ0=3;MQRankSum=0.032;QD=5.72;ReadPosRankSum=1.273;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:83,69:152:99:900,0,1343 chrXV 1070369 . T A 1259.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.316;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=1;MLEAF=0.500;MQ=29.35;MQ0=2;MQRankSum=-1.157;QD=8.56;ReadPosRankSum=0.188;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,74:147:99:1289,0,821 chrXV 1070370 . T A 2708 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=150;Dels=0.00;FS=25.835;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=29.77;MQ0=2;MQRankSum=-2.098;QD=18.05;ReadPosRankSum=2.333;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,148:150:99:2741,297,0 chrXV 1070376 . A T 2259 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.704;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=31.08;MQ0=3;MQRankSum=-1.752;QD=15.16;ReadPosRankSum=2.938;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:3,146:149:99:2292,273,0 chrXV 1070473 . G C 914 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=0;QD=10.63;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:947,105,0 chrXV 1070475 . A G 852 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.724;DP=84;Dels=0.00;FS=12.171;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=0;MQRankSum=-3.724;QD=10.14;ReadPosRankSum=3.687;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:5,79:84:99:885,99,0 chrXV 1070483 . T G 542 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=7.86;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:66:575,66,0 chrXV 1070494 . A G 239 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=3.768;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=0;MQRankSum=1.594;QD=4.78;ReadPosRankSum=1.663;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:30:272,30,0 chrXV 1070495 . T A 250 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=0;QD=5.10;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:30:283,30,0 chrXV 1070498 . T G 236 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=0;QD=4.82;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:30:269,30,0 chrXV 1070499 . T C 231 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;MQRankSum=0.208;QD=4.62;ReadPosRankSum=1.663;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:30:264,30,0 chrXV 1070507 . A C 206.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=5.119;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=0;MQRankSum=0.466;QD=3.96;ReadPosRankSum=1.666;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:27:239,27,0 chrXV 1070510 . T C 139.79 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.585;DP=52;Dels=0.00;FS=53.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.05;MQ0=0;MQRankSum=2.194;QD=2.69;ReadPosRankSum=2.498;SB=-2.281e+01 GT:AD:DP:GQ:PL 0/1:8,44:52:4:169,0,4 chrXV 1070521 . G C 287 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.26;MQ0=0;QD=6.83;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:36:320,36,0 chrXV 1070523 . C T 301 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.26;MQ0=0;QD=7.17;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:36:334,36,0 chrXV 1070527 . A G 296 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=0;QD=6.17;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:36:329,36,0 chrXV 1070536 . A G 213.01 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=1;QD=4.26;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,50:50:27:246,27,0 chrXV 1070538 . G A 204.01 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=1;QD=3.92;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,51:52:27:237,27,0 chrXV 1070549 . T C 256 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=3;MQRankSum=1.664;QD=4.74;ReadPosRankSum=1.664;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:1,53:54:33:289,33,0 chrXV 1070645 . C G 2016 filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.5467;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=29;QD=15.04;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,130:134:99:2049,225,0 chrXV 1070669 . C T 1578 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.81;MQ0=29;QD=15.03;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1611,177,0 chrXV 1070679 . A G 1245.64 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.563;DP=98;Dels=0.00;FS=9.007;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=27;MQRankSum=0.397;QD=12.71;ReadPosRankSum=-1.375;SB=-6.856e+02 GT:AD:DP:GQ:PL 1/1:18,79:98:11:1278,11,0 chrXV 1070741 . A G 2520 filter AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4294;MLEAC=2;MLEAF=1.00;MQ=38.80;MQ0=25;QD=17.03;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2553,285,0 chrXV 1070807 . A G 1996 filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7780;MLEAC=2;MLEAF=1.00;MQ=32.53;MQ0=15;QD=14.90;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2029,222,0 chrXV 1070855 . A G 908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.096;DP=94;Dels=0.00;FS=13.740;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=1;MQRankSum=-0.824;QD=9.66;ReadPosRankSum=3.304;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:4,90:94:99:941,108,0 chrXV 1070868 . T C 573 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=76;Dels=0.00;FS=9.661;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=1;MQRankSum=1.398;QD=7.54;ReadPosRankSum=2.384;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:3,73:76:66:606,66,0 chrXV 1070870 . T G 558 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=1;QD=7.54;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:66:591,66,0 chrXV 1070872 . A T 602 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.79;MQ0=1;QD=7.92;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:69:635,69,0 chrXV 1070885 . G A 692 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.26;MQ0=2;QD=7.60;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:2,87:91:81:725,81,0 chrXV 1070886 . A C 676 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.94;MQ0=2;QD=7.27;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:81:709,81,0 chrXV 1070965 . G T 2353 filter AC=2;AF=1.00;AN=2;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=8.8991;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=20;QD=15.90;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:16,131:147:99:2386,255,0 chrXV 1071068 . G A 1735 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=0;QD=16.37;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1768,192,0 chrXV 1071098 . A G 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.01;FS=3.087;HaplotypeScore=9.8413;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;MQRankSum=-0.122;QD=18.71;ReadPosRankSum=1.702;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2185,240,0 chrXV 1071160 . G A 2299 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=22.32;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2332,255,0 chrXV 1071181 . A G 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;MQRankSum=1.311;QD=22.23;ReadPosRankSum=1.700;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2412,270,0 chrXV 1071203 . G A 2514 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=22.85;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2547,285,0 chrXV 1071268 . A T 3162 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.3605;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;QD=23.77;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3195,342,0 chrXV 1071284 . T C 3340.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.7499;MLEAC=2;MLEAF=1.00;MQ=41.24;MQ0=0;QD=22.72;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3340,375,0 chrXV 1071405 . T C 3410.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=39.88;MQ0=0;QD=24.53;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3410,378,0 chrXV 1071436 . T C 3168 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.063;DP=170;Dels=0.00;FS=14.075;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=14;MQRankSum=4.705;QD=18.64;ReadPosRankSum=4.401;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:23,147:170:99:3201,324,0 chrXV 1071470 . T C 1866.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902;DP=153;Dels=0.00;FS=18.273;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=29.09;MQ0=14;MQRankSum=6.393;QD=12.20;ReadPosRankSum=-0.132;SB=-4.230e+02 GT:AD:DP:GQ:PL 0/1:44,108:153:50:1896,0,50 chrXV 1071476 . T G 1725.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.347;DP=147;Dels=0.00;FS=25.693;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=26.90;MQ0=14;MQRankSum=5.972;QD=11.73;ReadPosRankSum=-1.487;SB=-2.670e+02 GT:AD:DP:GQ:PL 0/1:47,100:147:77:1755,0,77 chrXV 1071487 . C T 174.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.152;DP=133;Dels=0.00;FS=53.441;HaplotypeScore=198.7450;MLEAC=1;MLEAF=0.500;MQ=25.68;MQ0=14;MQRankSum=-6.395;QD=1.31;ReadPosRankSum=3.341;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,50:133:99:204,0,1252 chrXV 1071518 . G A 1020.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.346;DP=113;Dels=0.00;FS=90.944;HaplotypeScore=5.5642;MLEAC=1;MLEAF=0.500;MQ=26.28;MQ0=3;MQRankSum=7.732;QD=9.03;ReadPosRankSum=-3.638;SB=0.015 GT:AD:DP:GQ:PL 0/1:49,62:113:99:1050,0,398 chrXV 1071534 . C T 355.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.359;DP=101;Dels=0.00;FS=86.962;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=28.16;MQ0=2;MQRankSum=-7.520;QD=3.51;ReadPosRankSum=3.462;SB=-3.013e+00 GT:AD:DP:GQ:PL 0/1:60,41:101:99:385,0,795 chrXV 1071555 . G A 973.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.075;DP=96;Dels=0.00;FS=109.651;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=3;MQRankSum=7.512;QD=10.14;ReadPosRankSum=-1.748;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:29,67:96:99:1003,0,303 chrXV 1071567 . C T 1689 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=3;QD=17.78;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1722,183,0 chrXV 1071583 . G A 1741 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.20;MQ0=3;QD=17.41;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1774,186,0 chrXV 1071604 . C T 1660 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=3;QD=17.11;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1693,189,0 chrXV 1071619 . A G 1419 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.72;MQ0=2;MQRankSum=-1.325;QD=16.31;ReadPosRankSum=1.691;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1452,165,0 chrXV 1071620 . A C 1465 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.346;DP=88;Dels=0.00;FS=7.743;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.66;MQ0=3;MQRankSum=2.867;QD=16.65;ReadPosRankSum=2.830;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,80:88:99:1498,168,0 chrXV 1071642 . C G 961 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.34;MQ0=5;QD=13.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:994,117,0 chrXV 1071644 . C T 805 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.457;DP=72;Dels=0.00;FS=10.413;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.34;MQ0=5;MQRankSum=3.933;QD=11.18;ReadPosRankSum=0.255;SB=-6.533e-03 GT:AD:DP:GQ:PL 1/1:15,57:72:58:838,58,0 chrXV 1071645 . T C 795 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=74;Dels=0.00;FS=19.627;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.27;MQ0=5;MQRankSum=3.982;QD=10.74;ReadPosRankSum=0.974;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:17,57:74:57:828,57,0 chrXV 1071669 . A G 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.875;DP=99;Dels=0.00;FS=3.250;HaplotypeScore=5.7110;MLEAC=1;MLEAF=0.500;MQ=19.55;MQ0=16;MQRankSum=-4.751;QD=0.16;ReadPosRankSum=-0.159;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:63,35:99:46:46,0,558 chrXV 1071676 . C T 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.931;DP=110;Dels=0.00;FS=4.058;HaplotypeScore=4.7208;MLEAC=1;MLEAF=0.500;MQ=19.40;MQ0=16;MQRankSum=-3.893;QD=0.31;ReadPosRankSum=-0.851;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:64,46:110:64:64,0,587 chrXV 1071767 . C T 212.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.307;DP=177;Dels=0.00;FS=27.061;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=15.71;MQ0=53;MQRankSum=-2.463;QD=1.20;ReadPosRankSum=-0.960;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:103,74:177:99:242,0,806 chrXV 1071985 . G A 1941.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;DP=361;Dels=0.00;FS=1.732;HaplotypeScore=13.4920;MLEAC=1;MLEAF=0.500;MQ=17.92;MQ0=128;MQRankSum=3.204;QD=5.38;ReadPosRankSum=-0.609;SB=-6.010e+02 GT:AD:DP:GQ:PL 0/1:181,179:361:99:1971,0,1581 chrXV 1072171 . A C 601.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.024;DP=334;Dels=0.00;FS=6.845;HaplotypeScore=21.9736;MLEAC=1;MLEAF=0.500;MQ=17.54;MQ0=108;MQRankSum=-3.189;QD=1.80;ReadPosRankSum=0.283;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/1:165,165:334:99:631,0,1112 chrXV 1072243 . C T 3842.01 filter AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=23.35;MQ0=112;QD=14.39;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,266:267:99:3842,414,0 chrXV 1072492 . A G 3324.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.525;DP=376;Dels=0.00;FS=0.378;HaplotypeScore=12.3859;MLEAC=1;MLEAF=0.500;MQ=31.54;MQ0=7;MQRankSum=1.018;QD=8.84;ReadPosRankSum=0.963;SB=-1.554e+03 GT:AD:DP:GQ:PL 0/1:192,182:376:99:3324,0,3554 chrXV 1072620 . C G 1385.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;DP=311;Dels=0.00;FS=1.212;HaplotypeScore=15.1121;MLEAC=1;MLEAF=0.500;MQ=23.25;MQ0=109;MQRankSum=-1.234;QD=4.45;ReadPosRankSum=0.348;SB=-2.310e+02 GT:AD:DP:GQ:PL 0/1:145,164:311:99:1415,0,1104 chrXV 1072663 . A G 1613.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.449;DP=371;Dels=0.00;FS=11.492;HaplotypeScore=28.6635;MLEAC=1;MLEAF=0.500;MQ=25.82;MQ0=37;MQRankSum=0.846;QD=4.35;ReadPosRankSum=0.881;SB=-4.790e+02 GT:AD:DP:GQ:PL 0/1:196,172:371:99:1643,0,2194 chrXV 1072674 . C T 1877.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;DP=384;Dels=0.00;FS=1.269;HaplotypeScore=25.3185;MLEAC=1;MLEAF=0.500;MQ=25.98;MQ0=29;MQRankSum=1.432;QD=4.89;ReadPosRankSum=-0.422;SB=-6.800e+02 GT:AD:DP:GQ:PL 0/1:201,179:384:99:1907,0,2332 chrXV 1072796 . T A 571.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.746;DP=184;Dels=0.00;FS=1.240;HaplotypeScore=6.3529;MLEAC=1;MLEAF=0.500;MQ=17.96;MQ0=120;MQRankSum=-0.054;QD=3.10;ReadPosRankSum=-0.376;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/1:84,100:184:99:601,0,568 chrXV 1072846 . A G 1542.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;DP=224;Dels=0.00;FS=2.095;HaplotypeScore=3.2847;MLEAC=1;MLEAF=0.500;MQ=23.96;MQ0=53;MQRankSum=2.531;QD=6.88;ReadPosRankSum=0.459;SB=-5.660e+02 GT:AD:DP:GQ:PL 0/1:111,112:224:99:1572,0,922 chrXV 1072999 . A G 859 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.101;DP=112;Dels=0.00;FS=21.319;HaplotypeScore=7.7878;MLEAC=2;MLEAF=1.00;MQ=35.17;MQ0=30;MQRankSum=-0.872;QD=7.67;ReadPosRankSum=3.721;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:5,107:112:99:892,99,0 chrXV 1073004 . C T 639 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=32.20;MQ0=34;QD=6.87;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,91:93:75:672,75,0 chrXV 1073008 . A G 501 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=83;Dels=0.00;FS=16.232;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=30.37;MQ0=34;MQRankSum=-0.985;QD=6.04;ReadPosRankSum=1.945;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:2,81:83:60:534,60,0 chrXV 1073009 . T C 395 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=34;MQRankSum=1.654;QD=5.06;ReadPosRankSum=1.654;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:1,77:78:48:428,48,0 chrXV 1073014 . G T 248 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.17;MQ0=41;QD=2.92;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,85:85:30:281,30,0 chrXV 1073024 . A G 503 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.12;MQ0=41;QD=4.84;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:60:536,60,0 chrXV 1073030 . C T 735 filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=36;QD=6.68;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:84:768,84,0 chrXV 1073069 . T C 450.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;DP=151;Dels=0.00;FS=51.503;HaplotypeScore=7.5912;MLEAC=1;MLEAF=0.500;MQ=43.77;MQ0=29;MQRankSum=-1.795;QD=2.98;ReadPosRankSum=0.092;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:93,58:151:99:480,0,1378 chrXV 1073976 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1791,186,0 chrXV 1074062 . A G 1793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.061;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=13.1478;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.298;QD=18.87;ReadPosRankSum=0.506;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1826,201,0 chrXV 1074123 . A G 1467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.113;DP=99;Dels=0.00;FS=8.152;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.253;QD=14.82;ReadPosRankSum=2.309;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:5,92:99:99:1500,168,0 chrXV 1074124 . G A 1514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.149;DP=101;Dels=0.00;FS=11.013;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=0.296;QD=14.99;ReadPosRankSum=2.005;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:5,96:101:99:1547,171,0 chrXV 1074193 . T A 2671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.027;QD=23.03;ReadPosRankSum=1.671;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2704,297,0 chrXV 1074569 . G A 3859.01 filter AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=5;QD=21.93;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3859,426,0 chrXV 1074829 . C A 3564.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.471;DP=246;Dels=0.00;FS=94.481;HaplotypeScore=33.8924;MLEAC=1;MLEAF=0.500;MQ=35.99;MQ0=15;MQRankSum=2.820;QD=14.49;ReadPosRankSum=0.467;SB=-1.960e+03 GT:AD:DP:GQ:PL 0/1:61,181:246:99:3564,0,469 chrXV 1074902 . C A 3192.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.342;DP=382;Dels=0.00;FS=90.457;HaplotypeScore=32.1232;MLEAC=1;MLEAF=0.500;MQ=31.87;MQ0=10;MQRankSum=2.624;QD=8.36;ReadPosRankSum=-0.265;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:210,171:382:99:3222,0,3816 chrXV 1075448 . G A 4388.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.660;DP=456;Dels=0.00;FS=2.008;HaplotypeScore=30.6230;MLEAC=1;MLEAF=0.500;MQ=52.71;MQ0=5;MQRankSum=-0.908;QD=9.62;ReadPosRankSum=0.072;SB=-2.143e+03 GT:AD:DP:GQ:PL 0/1:213,242:456:99:4388,0,3881 chrXV 1075521 . A G 3134.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.564;DP=347;Dels=0.00;FS=114.634;HaplotypeScore=36.0319;MLEAC=1;MLEAF=0.500;MQ=44.41;MQ0=25;MQRankSum=-4.820;QD=9.03;ReadPosRankSum=0.250;SB=-8.820e+02 GT:AD:DP:GQ:PL 0/1:152,192:347:99:3164,0,2142 chrXV 1075556 . A C 7425.01 filter AC=2;AF=1.00;AN=2;DP=357;Dels=0.00;FS=0.000;HaplotypeScore=23.6093;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=14;QD=20.80;SB=-4.074e+03 GT:AD:DP:GQ:PL 1/1:0,355:357:99:7425,825,0 chrXV 1075738 . C T 178.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.589;DP=242;Dels=0.00;FS=104.193;HaplotypeScore=11.0415;MLEAC=1;MLEAF=0.500;MQ=44.06;MQ0=2;MQRankSum=-9.433;QD=0.74;ReadPosRankSum=-1.688;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:190,52:242:99:208,0,3794 chrXV 1075901 . A G 639.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.273;DP=192;Dels=0.00;FS=1.347;HaplotypeScore=12.8660;MLEAC=1;MLEAF=0.500;MQ=42.91;MQ0=4;MQRankSum=-3.527;QD=3.33;ReadPosRankSum=-0.168;SB=-2.460e+02 GT:AD:DP:GQ:PL 0/1:143,47:192:99:669,0,1942 chrXV 1076035 . G A 2241 filter AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.35;MQ0=61;QD=14.09;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2274,243,0 chrXV 1076053 . A G 2678 filter AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=36;QD=16.74;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2711,300,0 chrXV 1076060 . T G 3122 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=171;Dels=0.00;FS=7.733;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=28;MQRankSum=-0.748;QD=18.26;ReadPosRankSum=2.415;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:2,169:171:99:3155,351,0 chrXV 1076104 . G A 2703 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;QD=18.64;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2736,288,0 chrXV 1076112 . G A 1839 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;QD=14.48;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1872,207,0 chrXV 1076141 . T G 939 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=0;QD=8.94;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:972,105,0 chrXV 1076146 . T C 625 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=64.4005;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=0;QD=6.87;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:75:658,75,0 chrXV 1076454 . A G 3572.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.745;DP=238;Dels=0.00;FS=12.321;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=79;MQRankSum=2.699;QD=15.01;ReadPosRankSum=3.726;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:5,232:238:99:3572,399,0 chrXV 1076513 . G C 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=13.8959;MLEAC=1;MLEAF=0.500;MQ=24.42;MQ0=31;MQRankSum=1.067;QD=0.47;ReadPosRankSum=-1.467;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,5:58:57:57,0,102 chrXV 1076602 . A C 2345 filter AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=18.67;MQ0=135;QD=9.46;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:2,245:248:99:2378,264,0 chrXV 1076636 . G A 1263 filter AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=20.11;MQ0=106;QD=7.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:1296,144,0 chrXV 1076641 . A G 1148 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.853;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=21.95;MQ0=101;MQRankSum=-0.729;QD=6.79;ReadPosRankSum=4.165;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:7,160:169:99:1181,132,0 chrXV 1077137 . C G 249 filter AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=5.41;MQ0=215;QD=1.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,227:230:33:282,33,0 chrXV 1077340 . A G 493 filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.32;MQ0=110;QD=3.71;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:2,131:133:60:526,60,0 chrXV 1077350 . A G 507 filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.95;MQ0=98;QD=4.16;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:2,119:122:63:540,63,0 chrXV 1077431 . T C 1612 filter AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=21.76;MQ0=67;QD=11.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:1645,183,0 chrXV 1077482 . T C 3382.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.8932;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=51;MQRankSum=-0.122;QD=17.52;ReadPosRankSum=1.683;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:3382,375,0 chrXV 1077555 . T C 1655 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.17;MQ0=50;MQRankSum=-0.544;QD=10.68;ReadPosRankSum=1.666;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:1,153:155:99:1688,189,0 chrXV 1077578 . A G 1276 filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.6600;MLEAC=2;MLEAF=1.00;MQ=17.74;MQ0=45;QD=8.68;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,143:147:99:1309,156,0 chrXV 1077656 . A G 5877.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=288;Dels=0.00;FS=3.477;HaplotypeScore=9.6594;MLEAC=2;MLEAF=1.00;MQ=41.36;MQ0=22;MQRankSum=1.627;QD=20.41;ReadPosRankSum=1.719;SB=-3.279e+03 GT:AD:DP:GQ:PL 1/1:3,284:288:99:5877,639,0 chrXV 1077923 . T C 1711 filter AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.7829;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=19;QD=10.37;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,162:165:99:1744,195,0 chrXV 1077928 . T C 1485 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.008;DP=147;Dels=0.00;FS=15.464;HaplotypeScore=5.5866;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=17;MQRankSum=-1.105;QD=10.10;ReadPosRankSum=1.873;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:2,143:147:99:1518,148,0 chrXV 1077936 . G A 1547 filter AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.3043;MLEAC=2;MLEAF=1.00;MQ=24.11;MQ0=11;QD=10.67;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:1580,174,0 chrXV 1078011 . A G 1513 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.26;MQ0=0;QD=10.09;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,149:150:99:1546,168,0 chrXV 1078080 . A G 2172 filter AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=16;QD=15.19;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2205,237,0 chrXV 1078236 . A G 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.527;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.8098;MLEAC=2;MLEAF=1.00;MQ=9.77;MQ0=11;MQRankSum=-0.962;QD=0.45;ReadPosRankSum=2.327;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:9,42:51:6:54,6,0 chrXV 1078854 . A G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.67;MQ0=123;QD=0.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:123,2:125:6:50,6,0 chrXV 1078958 . C T 544 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.51;MQ0=10;QD=15.54;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:0,34:35:60:577,60,0 chrXV 1079205 . G A 323 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.64;MQ0=3;QD=14.68;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:42:356,42,0 chrXV 1079377 . G C 286 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=4;QD=15.05;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:0,17:19:36:319,36,0 chrXVI 6567 . T C 102.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.70;MQ0=27;QD=1.86;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:1,53:54:18:135,18,0 chrXVI 6568 . C T 103.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.91;MQ0=26;MQRankSum=-2.109;QD=1.88;ReadPosRankSum=1.678;SB=-1.147e-01 GT:AD:DP:GQ:PL 1/1:28,27:55:18:136,18,0 chrXVI 6573 . C T 103.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.16;MQ0=26;QD=1.59;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:26,39:65:18:136,18,0 chrXVI 6585 . T C 124.06 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.15;MQ0=23;QD=1.65;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:21,54:75:21:157,21,0 chrXVI 6590 . C T 169.01 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.07;MQ0=24;QD=2.11;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:24,56:80:27:202,27,0 chrXVI 6622 . T C 151.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.240;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=10.0908;MLEAC=2;MLEAF=1.00;MQ=16.04;MQ0=14;MQRankSum=0.155;QD=2.13;ReadPosRankSum=1.848;SB=-4.009e-02 GT:AD:DP:GQ:PL 1/1:19,52:71:24:184,24,0 chrXVI 6625 . A G 124.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.704;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=11.1891;MLEAC=2;MLEAF=1.00;MQ=16.13;MQ0=13;MQRankSum=-0.498;QD=1.88;ReadPosRankSum=2.043;SB=-7.490e-02 GT:AD:DP:GQ:PL 1/1:17,48:66:21:157,21,0 chrXVI 6626 . C T 125.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.636;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=11.1891;MLEAC=2;MLEAF=1.00;MQ=16.25;MQ0=12;MQRankSum=-1.080;QD=1.92;ReadPosRankSum=1.750;SB=-7.488e-02 GT:AD:DP:GQ:PL 1/1:16,48:65:21:158,21,0 chrXVI 6627 . T G 123.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.259;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=50.1619;MLEAC=2;MLEAF=1.00;MQ=16.51;MQ0=10;MQRankSum=-0.380;QD=1.95;ReadPosRankSum=1.567;SB=-6.949e-02 GT:AD:DP:GQ:PL 1/1:15,48:63:21:156,21,0 chrXVI 6634 . T C 124.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.117;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=53.6764;MLEAC=2;MLEAF=1.00;MQ=17.07;MQ0=5;MQRankSum=-1.750;QD=2.14;ReadPosRankSum=0.957;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:3,55:58:21:157,21,0 chrXVI 6646 . C T 81.26 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=38.1251;MLEAC=2;MLEAF=1.00;MQ=18.03;MQ0=1;QD=1.89;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,43:43:15:114,15,0 chrXVI 6650 . T C 32.97 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.5584;MLEAC=2;MLEAF=1.00;MQ=17.13;MQ0=2;QD=0.89;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,37:37:9:65,9,0 chrXVI 6821 . G A 986 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.43;MQ0=10;QD=10.06;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1019,137,0 chrXVI 6822 . T C 978 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.707;DP=97;Dels=0.00;FS=26.896;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.51;MQ0=9;MQRankSum=-1.382;QD=10.08;ReadPosRankSum=4.064;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:11,85:97:99:1011,137,0 chrXVI 6824 . T C 1064 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=97;Dels=0.00;FS=8.281;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=15.70;MQ0=7;MQRankSum=-0.342;QD=10.97;ReadPosRankSum=2.395;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1097,146,0 chrXVI 6825 . C T 1046 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=15.70;MQ0=7;QD=10.78;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1079,143,0 chrXVI 6856 . G C 197.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.555;DP=123;Dels=0.00;FS=13.140;HaplotypeScore=23.5658;MLEAC=1;MLEAF=0.500;MQ=16.30;MQ0=9;MQRankSum=3.041;QD=1.60;ReadPosRankSum=6.666;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,21:123:99:227,0,896 chrXVI 6879 . T C 518 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=42;Dels=0.02;FS=10.142;HaplotypeScore=6.8781;MLEAC=2;MLEAF=1.00;MQ=18.20;MQ0=9;MQRankSum=-2.050;QD=12.33;ReadPosRankSum=2.292;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:3,38:41:72:551,72,0 chrXVI 6888 . G C 347.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;DP=38;Dels=0.00;FS=11.793;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.23;MQ0=9;MQRankSum=-0.708;QD=9.13;ReadPosRankSum=-0.122;SB=-1.300e+02 GT:AD:DP:GQ:PL 0/1:9,29:38:55:377,0,55 chrXVI 6903 . C T 339.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.873;DP=40;Dels=0.00;FS=11.253;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.58;MQ0=12;MQRankSum=0.159;QD=8.48;ReadPosRankSum=-0.531;SB=-1.300e+02 GT:AD:DP:GQ:PL 0/1:19,21:40:31:369,0,31 chrXVI 6905 . T C 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;DP=41;Dels=0.00;FS=11.253;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.38;MQ0=13;MQRankSum=-0.159;QD=0.49;ReadPosRankSum=0.584;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,9:41:50:50,0,369 chrXVI 6962 . T G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.99;MQ0=9;QD=0.46;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,26:26:6:43,6,0 chrXVI 6963 . A C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.99;MQ0=9;QD=0.46;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,26:26:6:43,6,0 chrXVI 6997 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.590;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=11.16;MQ0=5;MQRankSum=-2.143;QD=0.34;ReadPosRankSum=2.489;SB=1.37 GT:AD:DP:GQ:PL 1/1:8,27:35:6:43,6,0 chrXVI 7004 . G C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.9783;MLEAC=2;MLEAF=1.00;MQ=11.97;MQ0=2;QD=0.38;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,31:32:6:43,6,0 chrXVI 7016 . C T 54.51 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.8469;MLEAC=2;MLEAF=1.00;MQ=14.16;MQ0=4;QD=1.27;SB=-5.224e-01 GT:AD:DP:GQ:PL 1/1:1,42:43:12:87,12,0 chrXVI 7050 . G A 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.357;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=30.6378;MLEAC=1;MLEAF=0.500;MQ=13.89;MQ0=21;MQRankSum=2.410;QD=0.71;ReadPosRankSum=2.797;SB=-6.530e-03 GT:AD:DP:GQ:PL 0/1:40,11:51:53:66,0,53 chrXVI 7052 . C T 128.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.908;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=30.6378;MLEAC=2;MLEAF=1.00;MQ=13.75;MQ0=21;MQRankSum=3.476;QD=2.61;ReadPosRankSum=3.476;SB=-3.166e-02 GT:AD:DP:GQ:PL 1/1:31,18:49:21:161,21,0 chrXVI 7054 . G A 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=29.8492;MLEAC=1;MLEAF=0.500;MQ=13.61;MQ0=22;MQRankSum=0.849;QD=0.46;ReadPosRankSum=0.265;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:27,22:50:53:53,0,66 chrXVI 7055 . C T 32.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.661;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=29.8492;MLEAC=1;MLEAF=0.500;MQ=13.61;MQ0=22;MQRankSum=1.220;QD=0.64;ReadPosRankSum=0.053;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:43,7:50:62:62,0,66 chrXVI 7056 . C T 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=29.8492;MLEAC=1;MLEAF=0.500;MQ=13.61;MQ0=22;MQRankSum=0.478;QD=0.52;ReadPosRankSum=0.106;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:43,7:50:56:56,0,66 chrXVI 7057 . C T 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.635;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=29.8492;MLEAC=1;MLEAF=0.500;MQ=14.08;MQ0=22;MQRankSum=2.635;QD=0.71;ReadPosRankSum=2.546;SB=-6.528e-03 GT:AD:DP:GQ:PL 0/1:39,12:51:54:66,0,54 chrXVI 7059 . A G 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=29.8492;MLEAC=1;MLEAF=0.500;MQ=14.08;MQ0=22;MQRankSum=2.369;QD=0.71;ReadPosRankSum=2.723;SB=-6.524e-03 GT:AD:DP:GQ:PL 0/1:39,12:51:57:66,0,57 chrXVI 7069 . T A 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.594;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.64;MQ0=22;MQRankSum=-0.178;QD=0.82;ReadPosRankSum=0.533;SB=-6.525e-03 GT:AD:DP:GQ:PL 0/1:32,12:44:56:66,0,56 chrXVI 7072 . C A 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.88;MQ0=22;MQRankSum=-0.501;QD=0.86;ReadPosRankSum=0.039;SB=-6.524e-03 GT:AD:DP:GQ:PL 0/1:30,12:42:57:66,0,57 chrXVI 7076 . T C 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.047;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.88;MQ0=22;MQRankSum=0.193;QD=0.60;ReadPosRankSum=-0.116;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:31,11:42:55:55,0,66 chrXVI 7089 . G A 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.536;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.9667;MLEAC=1;MLEAF=0.500;MQ=14.53;MQ0=21;MQRankSum=-1.177;QD=0.92;ReadPosRankSum=-0.543;SB=-6.530e-03 GT:AD:DP:GQ:PL 0/1:28,11:39:53:66,0,53 chrXVI 7093 . T C 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.8334;MLEAC=1;MLEAF=0.500;MQ=14.52;MQ0=21;MQRankSum=-2.060;QD=0.95;ReadPosRankSum=-0.955;SB=-6.541e-03 GT:AD:DP:GQ:PL 0/1:27,11:38:50:66,0,50 chrXVI 7103 . A T 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.8334;MLEAC=1;MLEAF=0.500;MQ=12.71;MQ0=21;MQRankSum=1.663;QD=0.91;ReadPosRankSum=1.034;SB=-6.563e-03 GT:AD:DP:GQ:PL 0/1:27,5:32:47:59,0,47 chrXVI 7108 . G A 84.26 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.12;MQ0=19;QD=3.12;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:9,18:27:15:117,15,0 chrXVI 9374 . C G 179.01 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.52;MQ0=89;QD=1.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,108:108:27:212,27,0 chrXVI 9526 . A C 80.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;DP=92;Dels=0.00;FS=1.287;HaplotypeScore=2.9597;MLEAC=1;MLEAF=0.500;MQ=17.86;MQ0=35;MQRankSum=-0.976;QD=0.87;ReadPosRankSum=-0.994;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,27:92:99:110,0,126 chrXVI 9752 . C T 105.26 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.18;MQ0=9;QD=5.26;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:15:138,15,0 chrXVI 11402 . G C 1231 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.20;MQ0=13;QD=17.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1264,147,0 chrXVI 11426 . A C 1480.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.841;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=15.1857;MLEAC=1;MLEAF=0.500;MQ=26.79;MQ0=15;MQRankSum=-0.991;QD=11.84;ReadPosRankSum=-0.278;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,90:125:99:1510,0,427 chrXVI 11491 . C T 2521 filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.78;MQ0=44;QD=18.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2554,276,0 chrXVI 11526 . G A 2102 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.01;FS=0.000;HaplotypeScore=6.8797;MLEAC=2;MLEAF=1.00;MQ=26.42;MQ0=42;QD=16.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2135,234,0 chrXVI 11556 . G A 2436 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=33;QD=16.80;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2469,264,0 chrXVI 11565 . G C 1857 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=34;QD=14.40;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:1890,210,0 chrXVI 11566 . G A 1903 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.17;MQ0=35;QD=14.64;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,128:130:99:1936,207,0 chrXVI 11741 . G A 1742.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.585;DP=324;Dels=0.00;FS=0.486;HaplotypeScore=19.8330;MLEAC=1;MLEAF=0.500;MQ=33.05;MQ0=62;MQRankSum=-0.703;QD=5.38;ReadPosRankSum=0.658;SB=-6.560e+02 GT:AD:DP:GQ:PL 0/1:206,118:324:99:1772,0,3352 chrXVI 11985 . G A 771.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.807;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.8653;MLEAC=1;MLEAF=0.500;MQ=20.20;MQ0=118;MQRankSum=-1.062;QD=3.46;ReadPosRankSum=-1.515;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,126:223:99:801,0,573 chrXVI 12627 . G T 373.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.633;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.2571;MLEAC=1;MLEAF=0.500;MQ=21.81;MQ0=79;MQRankSum=0.376;QD=2.02;ReadPosRankSum=0.405;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:126,58:185:99:403,0,1698 chrXVI 12644 . T C 2581 filter AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=55;QD=16.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2614,297,0 chrXVI 12831 . A G 132.54 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.648;DP=180;Dels=0.04;FS=6.733;HaplotypeScore=282.5666;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=25;MQRankSum=-4.723;QD=0.74;ReadPosRankSum=-4.561;SB=-5.454e+01 GT:AD:DP:GQ:PL 1/1:161,11:172:2:162,2,0 chrXVI 12866 . C T 2112 filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=32.86;MQ0=30;QD=14.47;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,143:146:99:2145,234,0 chrXVI 12908 . T C 171.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.453;DP=60;Dels=0.00;FS=15.222;HaplotypeScore=30.0521;MLEAC=1;MLEAF=0.500;MQ=28.93;MQ0=24;MQRankSum=1.681;QD=2.85;ReadPosRankSum=-2.224;SB=-1.229e+02 GT:AD:DP:GQ:PL 0/1:41,18:60:99:201,0,215 chrXVI 12999 . A G 99.26 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.08;MQ0=19;QD=3.10;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:15:132,15,0 chrXVI 13064 . T C 443 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.50;MQ0=11;QD=11.66;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:57:476,57,0 chrXVI 13130 . C G 152.06 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.81;MQ0=1;QD=19.01;SB=-5.381e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:21:185,21,0 chrXVI 13133 . T C 149.06 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.81;MQ0=1;QD=18.63;SB=-5.281e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:21:182,21,0 chrXVI 13200 . G A 268 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.16;MQ0=3;QD=16.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:36:301,36,0 chrXVI 13203 . C T 278 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.20;MQ0=4;QD=16.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:36:311,36,0 chrXVI 13207 . A G 248 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=6;QD=14.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,16:17:30:281,30,0 chrXVI 13243 . A G 179.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.96;MQ0=7;MQRankSum=0.751;QD=11.19;ReadPosRankSum=0.751;SB=-1.045e+02 GT:AD:DP:GQ:PL 1/1:1,15:16:24:212,24,0 chrXVI 13304 . C G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.17;MQ0=0;QD=5.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:4:6:52,6,0 chrXVI 13426 . G A 215.01 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.19;MQ0=4;QD=15.36;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:27:248,27,0 chrXVI 13657 . A G 336 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.68;MQ0=46;QD=5.42;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:1,60:62:45:369,45,0 chrXVI 14414 . C G 640 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=19.93;MQ0=36;QD=9.70;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,64:66:75:673,75,0 chrXVI 14448 . T A 1061 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=24.35;MQ0=42;MQRankSum=-1.733;QD=12.48;ReadPosRankSum=1.652;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1094,120,0 chrXVI 14503 . C T 3189 filter AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=26.73;MQ0=116;QD=12.60;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:3222,348,0 chrXVI 14612 . G T 6594.01 filter AC=2;AF=1.00;AN=2;DP=283;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=32;QD=23.30;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,283:283:99:6594,712,0 chrXVI 14627 . C G 2496.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128;DP=312;Dels=0.00;FS=2.632;HaplotypeScore=9.5942;MLEAC=1;MLEAF=0.500;MQ=34.74;MQ0=36;MQRankSum=-2.126;QD=8.00;ReadPosRankSum=0.573;SB=-4.340e+02 GT:AD:DP:GQ:PL 0/1:163,148:312:99:2526,0,2711 chrXVI 14667 . G T 2979 filter AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.02;MQ0=71;QD=14.97;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,198:199:99:3012,324,0 chrXVI 14703 . A T 639 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=134;Dels=0.00;FS=3.854;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=19.59;MQ0=100;MQRankSum=-1.427;QD=4.77;ReadPosRankSum=1.529;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:1,133:134:75:672,75,0 chrXVI 14741 . G A 1517 filter AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.86;MQ0=101;QD=8.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:1550,171,0 chrXVI 15418 . C G 2756 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=2;QD=20.72;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2789,324,0 chrXVI 15522 . T G 713 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=26.20;MQ0=1;QD=20.37;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:746,87,0 chrXVI 15557 . C T 894.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;DP=75;Dels=0.00;FS=175.362;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.76;MQ0=1;MQRankSum=6.645;QD=11.92;ReadPosRankSum=-0.445;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:24,51:75:99:924,0,429 chrXVI 15630 . C T 51.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;DP=28;Dels=0.00;FS=48.181;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=29.16;MQ0=0;MQRankSum=-3.448;QD=1.82;ReadPosRankSum=-2.537;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:21,5:28:81:81,0,296 chrXVI 15669 . C A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=1;QD=5.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:53,6,0 chrXVI 16176 . G T 1521.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.719;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=29.99;MQ0=6;MQRankSum=3.121;QD=15.36;ReadPosRankSum=-1.269;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,75:99:99:1551,0,230 chrXVI 16332 . A G 171.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.285;DP=194;Dels=0.00;FS=1.621;HaplotypeScore=13.4126;MLEAC=1;MLEAF=0.500;MQ=37.77;MQ0=0;MQRankSum=-5.342;QD=0.88;ReadPosRankSum=1.158;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:163,29:194:99:201,0,3176 chrXVI 16353 . C T 248.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.321;DP=185;Dels=0.00;FS=4.863;HaplotypeScore=12.3859;MLEAC=1;MLEAF=0.500;MQ=38.46;MQ0=4;MQRankSum=-4.746;QD=1.34;ReadPosRankSum=7.164;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/1:154,31:185:99:278,0,2821 chrXVI 16357 . C T 267.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.687;DP=184;Dels=0.00;FS=3.558;HaplotypeScore=14.7519;MLEAC=1;MLEAF=0.500;MQ=38.08;MQ0=4;MQRankSum=-4.828;QD=1.45;ReadPosRankSum=6.003;SB=-1.220e+02 GT:AD:DP:GQ:PL 0/1:152,32:184:99:297,0,2778 chrXVI 16410 . G A 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.287;DP=182;Dels=0.00;FS=12.177;HaplotypeScore=18.2176;MLEAC=1;MLEAF=0.500;MQ=45.22;MQ0=8;MQRankSum=-4.000;QD=0.21;ReadPosRankSum=7.207;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:158,23:182:69:69,0,2418 chrXVI 16412 . T G 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.553;DP=181;Dels=0.00;FS=12.231;HaplotypeScore=19.0063;MLEAC=1;MLEAF=0.500;MQ=45.10;MQ0=8;MQRankSum=-2.562;QD=0.13;ReadPosRankSum=7.070;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:157,23:181:53:53,0,2565 chrXVI 16500 . A G 3304.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=194;Dels=0.00;FS=3.016;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=31.48;MQ0=2;MQRankSum=-2.283;QD=17.03;ReadPosRankSum=2.424;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:3304,393,0 chrXVI 16608 . T A 3501.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.573;DP=189;Dels=0.00;FS=23.920;HaplotypeScore=23.4963;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=5;MQRankSum=3.831;QD=18.52;ReadPosRankSum=-1.360;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:17,172:189:99:3501,160,0 chrXVI 16794 . C T 2625 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=23.44;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2658,285,0 chrXVI 16847 . T C 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=162;Dels=0.00;FS=8.478;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.449;QD=21.20;ReadPosRankSum=1.711;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3434,402,0 chrXVI 16980 . T A 1637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=95;Dels=0.00;FS=5.649;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=2.054;QD=17.23;ReadPosRankSum=2.862;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1670,183,0 chrXVI 17068 . G A 1806 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.76;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1839,213,0 chrXVI 17345 . G A 2605 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.18;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2638,285,0 chrXVI 17370 . T C 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-0.543;QD=20.47;ReadPosRankSum=1.706;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2776,312,0 chrXVI 17384 . T C 2561 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.17;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2594,288,0 chrXVI 17412 . A T 2377 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=17.35;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2410,264,0 chrXVI 17474 . A G 1659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;MQRankSum=0.251;QD=13.38;ReadPosRankSum=1.648;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:1692,189,0 chrXVI 17536 . T C 2269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=3.266;HaplotypeScore=10.7769;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;MQRankSum=0.866;QD=16.09;ReadPosRankSum=1.683;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2302,258,0 chrXVI 17634 . T G 1148 filter AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.47;MQ0=39;QD=8.03;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:1,142:143:99:1181,132,0 chrXVI 17787 . C T 1020 filter AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=26;QD=9.81;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1053,117,0 chrXVI 17803 . A G 625.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.058;DP=129;Dels=0.00;FS=44.474;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=28.91;MQ0=36;MQRankSum=-0.991;QD=4.85;ReadPosRankSum=1.448;SB=-3.420e+02 GT:AD:DP:GQ:PL 0/1:54,73:129:99:655,0,522 chrXVI 17820 . A G 2015 filter AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.7829;MLEAC=2;MLEAF=1.00;MQ=31.24;MQ0=38;QD=14.60;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2048,228,0 chrXVI 17864 . T C 3747.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.2316;MLEAC=2;MLEAF=1.00;MQ=33.13;MQ0=33;MQRankSum=-0.422;QD=19.83;ReadPosRankSum=1.688;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:1,186:189:99:3747,426,0 chrXVI 17895 . T C 2680 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=100.9359;MLEAC=2;MLEAF=1.00;MQ=33.84;MQ0=22;QD=21.10;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2713,312,0 chrXVI 17926 . G A 1399 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.38;MQ0=9;QD=21.20;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1432,153,0 chrXVI 17980 . T C 639 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=35;Dels=0.00;FS=27.226;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=2;MQRankSum=2.301;QD=18.26;ReadPosRankSum=2.301;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,33:35:78:672,78,0 chrXVI 18025 . T C 772.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.542;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=22.73;MQ0=62;MQRankSum=0.986;QD=5.68;ReadPosRankSum=-1.142;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:57,79:136:99:802,0,502 chrXVI 18075 . A T 642.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=1;MLEAF=0.500;MQ=20.93;MQ0=139;MQRankSum=1.490;QD=2.77;ReadPosRankSum=-0.569;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,103:232:99:672,0,1040 chrXVI 19203 . T C 188.03 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=19.77;MQ0=17;QD=5.70;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:12,21:33:24:221,24,0 chrXVI 19230 . G C 277 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=9;QD=7.49;SB=-8.700e-03 GT:AD:DP:GQ:PL 1/1:0,36:37:36:310,36,0 chrXVI 19245 . C T 300 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.22;MQ0=5;QD=6.98;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:2,41:43:36:333,36,0 chrXVI 19253 . T C 417 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=4;MQRankSum=-1.732;QD=8.02;ReadPosRankSum=1.660;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:1,51:52:51:450,51,0 chrXVI 19268 . G A 502 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=4;QD=7.49;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:60:535,60,0 chrXVI 19289 . C T 606 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=4;QD=9.32;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:69:639,69,0 chrXVI 19305 . G A 630 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=3;QD=10.16;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:72:663,72,0 chrXVI 19338 . G A 495 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.30;MQ0=2;QD=10.53;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:1,46:47:54:528,54,0 chrXVI 19349 . C T 384 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;QD=10.67;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:45:417,45,0 chrXVI 19385 . G A 494 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.18;MQ0=6;QD=14.11;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:57:527,57,0 chrXVI 19406 . A G 872 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=25.58;MQ0=6;QD=17.10;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:905,102,0 chrXVI 19466 . G A 2553 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.8670;MLEAC=2;MLEAF=1.00;MQ=29.56;MQ0=0;QD=23.64;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2586,288,0 chrXVI 19482 . G A 2676 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=0;QD=23.47;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2709,297,0 chrXVI 19545 . A G 2265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=3.802;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=0;MQRankSum=-0.036;QD=23.59;ReadPosRankSum=1.696;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2298,255,0 chrXVI 19582 . C T 1280 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=34.30;MQ0=0;QD=13.06;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1313,147,0 chrXVI 19590 . G A 969 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=0;QD=11.96;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1002,114,0 chrXVI 19596 . A G 761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=5.905;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=0;MQRankSum=1.170;QD=10.28;ReadPosRankSum=1.685;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:90:794,90,0 chrXVI 19639 . G A 823 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=8.40;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:93:856,93,0 chrXVI 19655 . G C 812 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.280;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;MQRankSum=1.440;QD=9.78;ReadPosRankSum=1.690;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:96:845,96,0 chrXVI 19657 . C T 844 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.440;DP=83;Dels=0.00;FS=3.280;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;MQRankSum=-0.104;QD=10.17;ReadPosRankSum=1.690;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:96:877,96,0 chrXVI 19659 . G A 838 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=10.10;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:96:871,96,0 chrXVI 19695 . C T 791 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.41;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:90:824,90,0 chrXVI 19696 . C T 707 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;QD=9.18;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:84:740,84,0 chrXVI 19706 . G A 900 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.67;MQ0=0;QD=10.84;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:933,105,0 chrXVI 19727 . C T 978 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.60;MQ0=0;QD=12.38;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1011,111,0 chrXVI 19738 . A G 920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=36.65;MQ0=0;MQRankSum=0.967;QD=11.79;ReadPosRankSum=1.687;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:953,108,0 chrXVI 19740 . A G 1016 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=37.04;MQ0=0;QD=12.86;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1049,117,0 chrXVI 19792 . A G 1756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;MQRankSum=-1.039;QD=16.57;ReadPosRankSum=1.699;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:1789,207,0 chrXVI 19818 . C T 2365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=0;MQRankSum=1.491;QD=20.57;ReadPosRankSum=1.581;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2398,264,0 chrXVI 19853 . A T 2662 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.5415;MLEAC=2;MLEAF=1.00;MQ=32.53;MQ0=0;QD=20.96;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2695,288,0 chrXVI 19918 . T C 1699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=32.69;MQ0=0;MQRankSum=-1.464;QD=21.24;ReadPosRankSum=2.203;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1732,201,0 chrXVI 19964 . T C 1646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=0;MQRankSum=1.685;QD=22.24;ReadPosRankSum=1.685;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1679,192,0 chrXVI 19977 . T C 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.05;MQ0=0;MQRankSum=-1.357;QD=20.67;ReadPosRankSum=1.440;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1749,198,0 chrXVI 20018 . C G 2065 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=20.86;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2098,243,0 chrXVI 20036 . G T 1785 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.59;MQ0=0;QD=19.83;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1818,204,0 chrXVI 20054 . T G 1625 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;QD=19.12;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1658,189,0 chrXVI 20057 . T C 1478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=4.482;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.70;MQ0=0;MQRankSum=1.254;QD=16.99;ReadPosRankSum=1.692;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1511,186,0 chrXVI 20075 . T G 1344 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.84;MQ0=0;QD=17.01;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1377,159,0 chrXVI 20093 . G C 1105 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;QD=14.54;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1138,132,0 chrXVI 20127 . T A 1411 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.74;MQ0=0;QD=15.51;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1444,159,0 chrXVI 20134 . C T 1373 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.74;MQ0=0;QD=15.09;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1406,156,0 chrXVI 20140 . G T 1219 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.24;MQ0=0;QD=14.69;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1252,138,0 chrXVI 20186 . G A 409 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.5912;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=0;QD=4.81;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:48:442,48,0 chrXVI 20220 . A G 1115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.731;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;MQRankSum=0.020;QD=13.12;ReadPosRankSum=1.691;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1148,132,0 chrXVI 20272 . C T 1829 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=21.52;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1862,207,0 chrXVI 20283 . C T 1626 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=22.27;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1659,186,0 chrXVI 20295 . A G 1606 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=21.70;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1639,186,0 chrXVI 20347 . T C 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=94;Dels=0.00;FS=2.777;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;MQRankSum=-1.087;QD=20.19;ReadPosRankSum=2.397;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1931,222,0 chrXVI 20495 . G C 2156 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=22.46;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2189,249,0 chrXVI 20538 . A G 2048 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=19.69;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2081,237,0 chrXVI 20554 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=18.12;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1791,201,0 chrXVI 20565 . G C 1768 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=18.04;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1801,216,0 chrXVI 20591 . G T 1961 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;QD=19.23;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1994,219,0 chrXVI 20613 . C T 1631 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=0;QD=15.99;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1664,186,0 chrXVI 20631 . C T 1467 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.83;MQ0=0;QD=16.12;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1500,168,0 chrXVI 20666 . G C 1208 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=0;QD=14.21;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1241,153,0 chrXVI 20668 . G A 1303 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.97;MQ0=0;QD=15.51;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1336,153,0 chrXVI 20677 . A G 1286 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=0;QD=14.78;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,83:87:99:1319,159,0 chrXVI 20704 . C T 72.51 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=54.3460;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;QD=1.05;SB=-8.405e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:12:105,12,0 chrXVI 20774 . T A 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;MQRankSum=-0.111;QD=20.72;ReadPosRankSum=1.700;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2291,252,0 chrXVI 20793 . G T 2384 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=22.49;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2417,261,0 chrXVI 20853 . C T 1479 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=36.23;MQ0=0;QD=19.46;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1512,168,0 chrXVI 20867 . T C 1235 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=55.1854;MLEAC=2;MLEAF=1.00;MQ=35.84;MQ0=0;QD=20.25;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1268,150,0 chrXVI 20903 . T A 509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=4.771;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;MQRankSum=-0.844;QD=13.05;ReadPosRankSum=1.555;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:63:542,63,0 chrXVI 20916 . T C 696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=5.488;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.14;MQ0=0;MQRankSum=1.055;QD=15.13;ReadPosRankSum=1.657;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:84:729,84,0 chrXVI 20924 . T C 869 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;QD=16.09;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:902,105,0 chrXVI 20927 . C T 946 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.63;MQ0=0;QD=16.60;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:979,105,0 chrXVI 20947 . C T 1516 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;QD=18.72;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1549,168,0 chrXVI 20964 . G A 2153 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=19.75;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2186,240,0 chrXVI 21007 . T C 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=3.495;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=0.606;QD=21.01;ReadPosRankSum=1.704;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2617,294,0 chrXVI 21048 . G A 1659 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=18.64;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1692,183,0 chrXVI 21070 . A G 1209 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=16.56;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1242,138,0 chrXVI 21082 . G C 959 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.26;MQ0=0;QD=13.70;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:992,117,0 chrXVI 21094 . T C 596 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.67;MQ0=0;MQRankSum=1.102;QD=10.64;ReadPosRankSum=2.360;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:69:629,69,0 chrXVI 21096 . A G 582 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.67;MQ0=0;QD=10.39;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:69:615,69,0 chrXVI 21102 . G A 639 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=10.48;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:75:672,75,0 chrXVI 21105 . G T 705 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.02;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:84:738,84,0 chrXVI 21112 . T C 743 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;QD=11.43;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:90:776,90,0 chrXVI 21163 . C T 1745 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.66;MQ0=0;QD=18.76;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1778,195,0 chrXVI 21172 . T A 1960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=2.993;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;MQRankSum=-2.160;QD=19.22;ReadPosRankSum=2.401;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1993,216,0 chrXVI 21201 . A G 2746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.118;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;MQRankSum=0.634;QD=22.15;ReadPosRankSum=1.648;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2779,312,0 chrXVI 21263 . T C 3568.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.4088;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;MQRankSum=0.045;QD=23.17;ReadPosRankSum=1.710;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3568,408,0 chrXVI 21314 . C A 3533.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=24.53;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3533,381,0 chrXVI 21346 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=21.86;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3181,342,0 chrXVI 21363 . A T 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=4.594;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;MQRankSum=0.265;QD=21.51;ReadPosRankSum=1.708;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3131,342,0 chrXVI 21507 . G A 4253.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=21.37;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4253,456,0 chrXVI 21518 . A G 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;MQRankSum=0.321;QD=20.18;ReadPosRankSum=1.714;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:3956,441,0 chrXVI 21542 . C T 3640.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=20.92;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3640,405,0 chrXVI 21603 . C T 3294.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;QD=18.93;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3294,366,0 chrXVI 21607 . T C 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=174;Dels=0.00;FS=3.245;HaplotypeScore=4.1603;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-0.355;QD=17.63;ReadPosRankSum=1.671;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:3101,354,0 chrXVI 21630 . T C 2779 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;QD=16.16;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2812,324,0 chrXVI 21642 . T A 2883 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.9342;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=0;QD=15.25;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:2916,330,0 chrXVI 21690 . A C 2744 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=156;Dels=0.00;FS=2.583;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;MQRankSum=-1.381;QD=17.59;ReadPosRankSum=2.955;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:2777,318,0 chrXVI 21691 . G A 2872 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=18.77;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2905,318,0 chrXVI 21700 . C G 3013 SnpCluster AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=19.44;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3046,342,0 chrXVI 21806 . G T 2457 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=20.65;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2490,288,0 chrXVI 21810 . C T 2522 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.68;MQ0=0;QD=20.84;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2555,288,0 chrXVI 21824 . G C 2274 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;QD=19.77;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2307,270,0 chrXVI 21870 . A G 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.179;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;MQRankSum=-0.283;QD=19.72;ReadPosRankSum=2.401;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:2,98:101:99:2025,234,0 chrXVI 21970 . C A 2053 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.16;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2086,228,0 chrXVI 21980 . C T 2004 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.65;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2037,222,0 chrXVI 22097 . G A 2531 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.4657;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.27;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2564,276,0 chrXVI 22192 . C T 3769.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=13.7293;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.56;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3769,420,0 chrXVI 22304 . T A 3302.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.0311;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.77;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3302,357,0 chrXVI 22333 . A G 3134 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=20.48;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3167,363,0 chrXVI 22373 . A T 3580.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.0773;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.34;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3580,384,0 chrXVI 22388 . C T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=19.94;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3589,396,0 chrXVI 22477 . T C 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-0.696;QD=21.58;ReadPosRankSum=1.650;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2795,315,0 chrXVI 22543 . G A 2810 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.65;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2843,306,0 chrXVI 22544 . T C 2750 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=19.10;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2783,309,0 chrXVI 22571 . A G 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=0.722;QD=19.92;ReadPosRankSum=1.711;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3347,375,0 chrXVI 22695 . T A 2235 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.78;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2268,258,0 chrXVI 22706 . G T 2147 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=19.17;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2180,243,0 chrXVI 22707 . T C 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=0.353;QD=18.16;ReadPosRankSum=1.701;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2085,243,0 chrXVI 22763 . C G 2431 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=18.70;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2464,279,0 chrXVI 22824 . G A 2439 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=17.80;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2472,264,0 chrXVI 22826 . A T 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.490;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=0.362;QD=17.37;ReadPosRankSum=1.603;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2360,252,0 chrXVI 22892 . T C 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.739;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.993;QD=19.51;ReadPosRankSum=1.547;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2960,324,0 chrXVI 23027 . T G 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=3.490;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-1.603;QD=22.30;ReadPosRankSum=1.680;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:3066,357,0 chrXVI 23219 . A T 3532.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.41;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3532,393,0 chrXVI 23234 . A G 2980 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=19.23;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3013,348,0 chrXVI 23351 . T C 3658.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.77;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3658,423,0 chrXVI 23426 . G A 4305.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.7855;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.27;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4305,477,0 chrXVI 23456 . A G 4285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=21.6426;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=1.362;QD=22.67;ReadPosRankSum=1.658;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4285,489,0 chrXVI 23495 . G T 4534.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=19.0361;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.25;SB=-2.336e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4534,495,0 chrXVI 23562 . A T 4763.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.12;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4763,516,0 chrXVI 23600 . T C 4347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.6327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.156;QD=22.76;ReadPosRankSum=1.677;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:1,188:191:99:4347,495,0 chrXVI 23831 . A T 5043.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.7611;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=23.24;SB=-2.598e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:5043,552,0 chrXVI 23906 . A G 5686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.706;DP=286;Dels=0.00;FS=11.351;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=1.032;QD=19.88;ReadPosRankSum=2.968;SB=-2.884e+03 GT:AD:DP:GQ:PL 1/1:3,280:286:99:5686,657,0 chrXVI 23951 . T C 4955.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=275;Dels=0.00;FS=2.785;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=-2.054;QD=18.02;ReadPosRankSum=2.405;SB=-2.534e+03 GT:AD:DP:GQ:PL 1/1:2,272:275:99:4955,561,0 chrXVI 23952 . G A 5193.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=18.88;SB=-2.827e+03 GT:AD:DP:GQ:PL 1/1:0,273:275:99:5193,558,0 chrXVI 24044 . G A 4995.01 SnpCluster AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=42.23;MQ0=0;QD=19.44;SB=-2.949e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:4995,549,0 chrXVI 24047 . T C 4586.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=3.4078;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;MQRankSum=-1.368;QD=17.78;ReadPosRankSum=1.719;SB=-2.756e+03 GT:AD:DP:GQ:PL 1/1:1,256:258:99:4586,531,0 chrXVI 24050 . G A 4427.01 SnpCluster AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=1.7870;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;QD=17.50;SB=-3.051e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:4427,495,0 chrXVI 24053 . A T 4699.01 SnpCluster AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;QD=17.80;SB=-3.156e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:4699,510,0 chrXVI 24087 . C A 5293.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=18.13;SB=-3.728e+03 GT:AD:DP:GQ:PL 1/1:0,291:291:99:5293,576,0 chrXVI 24125 . G A 5910.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=6.3441;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.74;SB=-3.164e+03 GT:AD:DP:GQ:PL 1/1:0,283:285:99:5910,637,0 chrXVI 24524 . T C 3019 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=19.23;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3052,354,0 chrXVI 24530 . T C 2908 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=18.41;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2941,336,0 chrXVI 24539 . T C 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=159;Dels=0.00;FS=6.327;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;MQRankSum=0.008;QD=17.96;ReadPosRankSum=2.388;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:2889,324,0 chrXVI 24572 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.8907;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;QD=17.95;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2403,261,0 chrXVI 24587 . G T 1724 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.78;MQ0=0;QD=15.12;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1757,192,0 chrXVI 24614 . A G 1731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=96;Dels=0.00;FS=2.599;HaplotypeScore=2.8362;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;MQRankSum=-1.579;QD=18.03;ReadPosRankSum=2.906;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:3,93:96:99:1764,201,0 chrXVI 24629 . A G 1727 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.63;MQ0=0;QD=20.08;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1760,207,0 chrXVI 24634 . A G 1733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;MQRankSum=-0.540;QD=18.63;ReadPosRankSum=1.695;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1766,201,0 chrXVI 24645 . G A 1774 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;QD=17.39;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1807,204,0 chrXVI 24809 . T C 1822 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=19.38;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1855,216,0 chrXVI 24844 . T C 1317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;MQRankSum=0.458;QD=14.97;ReadPosRankSum=1.653;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1350,162,0 chrXVI 24847 . G T 1459 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=0;QD=16.21;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1492,171,0 chrXVI 24865 . G A 1181 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=12.18;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1214,141,0 chrXVI 24867 . G A 1203 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;QD=12.53;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1236,141,0 chrXVI 24950 . G A 3366.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.21;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3366,360,0 chrXVI 24955 . A G 3204 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.22;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3237,369,0 chrXVI 25185 . C T 2727 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.0222;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.51;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2760,309,0 chrXVI 25269 . T C 3058 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.12;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3091,360,0 chrXVI 25297 . A C 3104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=152;Dels=0.00;FS=2.946;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=0.025;QD=20.42;ReadPosRankSum=2.384;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:2,148:152:99:3137,360,0 chrXVI 25365 . C T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=24.07;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3346,363,0 chrXVI 25407 . G A 2961 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.60;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2994,324,0 chrXVI 25497 . T C 3877.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.5761;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.90;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3877,444,0 chrXVI 25524 . A G 3728.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.32;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3728,420,0 chrXVI 25566 . T C 3543.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=158;Dels=0.00;FS=3.008;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-0.352;QD=22.42;ReadPosRankSum=2.418;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3543,396,0 chrXVI 25623 . T C 3524.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=19.05;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3524,411,0 chrXVI 25632 . A G 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=181;Dels=0.00;FS=10.404;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=0.350;QD=18.62;ReadPosRankSum=2.906;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:3370,375,0 chrXVI 25657 . A G 3636.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=17.15;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:3636,420,0 chrXVI 25798 . A G 111.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.460;DP=239;Dels=0.00;FS=29.776;HaplotypeScore=8.6642;MLEAC=1;MLEAF=0.500;MQ=42.58;MQ0=5;MQRankSum=-3.658;QD=0.46;ReadPosRankSum=-0.604;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:200,38:239:99:141,0,3780 chrXVI 26069 . G C 521 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=23.75;MQ0=18;QD=5.66;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,88:91:60:554,60,0 chrXVI 26081 . G A 199 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.75;MQ0=0;QD=3.90;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:30:232,30,0 chrXVI 26082 . T C 197 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.75;MQ0=0;QD=3.86;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:30:230,30,0 chrXVI 26083 . T C 197 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.75;MQ0=0;QD=3.86;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:30:230,30,0 chrXVI 26084 . A G 148.03 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.75;MQ0=0;QD=2.90;SB=-6.804e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:24:181,24,0 chrXVI 26085 . A G 149.03 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.50;MQ0=0;QD=2.76;SB=-7.004e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:24:182,24,0 chrXVI 26087 . T A 198 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=6.247;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=0;MQRankSum=-0.793;QD=3.36;ReadPosRankSum=1.674;SB=-7.102e+01 GT:AD:DP:GQ:PL 1/1:1,58:59:30:231,30,0 chrXVI 26114 . A G 1195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=12.8882;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;MQRankSum=0.589;QD=11.95;ReadPosRankSum=1.697;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1228,138,0 chrXVI 26200 . C T 1966 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=0;QD=23.13;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1999,216,0 chrXVI 26204 . G A 1780 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;QD=21.71;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1813,195,0 chrXVI 26222 . T C 1593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=30.82;MQ0=0;MQRankSum=-0.122;QD=17.32;ReadPosRankSum=2.856;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:3,88:92:99:1626,186,0 chrXVI 26261 . A G 1206 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.67;MQ0=0;QD=11.49;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1239,144,0 chrXVI 26265 . G C 1257 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=0;QD=10.93;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1290,156,0 chrXVI 26289 . G A 1677 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.55;MQ0=0;QD=11.65;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:1710,186,0 chrXVI 26299 . T A 1699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-1.151;QD=11.40;ReadPosRankSum=1.709;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,148:149:99:1732,192,0 chrXVI 26330 . C T 1449 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.70;MQ0=0;QD=9.99;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:1482,162,0 chrXVI 26358 . C G 1461 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.42;MQ0=0;QD=10.22;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:1494,171,0 chrXVI 26365 . G A 1560 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;QD=10.91;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:1593,174,0 chrXVI 26373 . A G 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=139;Dels=0.00;FS=6.912;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;MQRankSum=-0.027;QD=9.81;ReadPosRankSum=2.414;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:1396,159,0 chrXVI 26387 . T G 1277 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.20;MQ0=0;QD=9.39;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:1310,147,0 chrXVI 26397 . A G 1207 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=9.43;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1240,141,0 chrXVI 26402 . G A 1280 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=9.92;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1313,144,0 chrXVI 26429 . T C 1712 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=0;QD=11.19;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:1745,207,0 chrXVI 26433 . T C 1642 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.68;MQ0=0;QD=11.02;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:1675,201,0 chrXVI 26434 . G A 1640 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=10.86;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:1673,192,0 chrXVI 26463 . G C 2326 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.41;MQ0=0;QD=13.52;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:2359,270,0 chrXVI 26592 . T C 3831.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=13.9925;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=0;MQRankSum=-0.967;QD=22.14;ReadPosRankSum=1.631;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3831,444,0 chrXVI 26641 . A G 3420.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=158;Dels=0.00;FS=3.774;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;MQRankSum=0.101;QD=21.65;ReadPosRankSum=1.710;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,154:158:99:3420,393,0 chrXVI 26688 . G A 3642.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=24.12;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3642,393,0 chrXVI 26755 . T C 2955 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=18.58;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:2988,339,0 chrXVI 26758 . C T 3043 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=19.89;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3076,336,0 chrXVI 26764 . T C 2955 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=19.19;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2988,345,0 chrXVI 26802 . A G 2738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.631;DP=168;Dels=0.00;FS=12.080;HaplotypeScore=5.3516;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;MQRankSum=-0.252;QD=16.30;ReadPosRankSum=3.696;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:5,163:168:99:2771,312,0 chrXVI 26818 . A G 2749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=169;Dels=0.00;FS=5.949;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;MQRankSum=-1.078;QD=16.27;ReadPosRankSum=2.898;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:3,165:169:99:2782,318,0 chrXVI 26836 . T C 3120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=167;Dels=0.00;FS=6.260;HaplotypeScore=4.2657;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=0.644;QD=18.68;ReadPosRankSum=1.754;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3153,342,0 chrXVI 26869 . G A 3801.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.44;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3801,414,0 chrXVI 27058 . G A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.38;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3737,402,0 chrXVI 27128 . C T 4254.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.0154;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.77;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4254,459,0 chrXVI 27168 . T C 4192.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=186;Dels=0.00;FS=12.083;HaplotypeScore=15.1219;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.412;QD=22.54;ReadPosRankSum=2.940;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:3,180:186:99:4192,477,0 chrXVI 27460 . A G 2643 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.33;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2676,297,0 chrXVI 27466 . C T 2714 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.10;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2747,294,0 chrXVI 27655 . T C 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.453;QD=21.28;ReadPosRankSum=1.705;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2799,321,0 chrXVI 27658 . T C 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=-1.607;QD=20.31;ReadPosRankSum=1.682;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2856,330,0 chrXVI 27817 . G T 3301.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.44;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3301,378,0 chrXVI 27841 . A G 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=156;Dels=0.00;FS=10.759;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-0.614;QD=19.89;ReadPosRankSum=2.941;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:3,151:156:99:3136,366,0 chrXVI 27877 . C T 3290.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.23;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3290,354,0 chrXVI 27919 . A G 3113 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=20.08;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3146,369,0 chrXVI 27981 . G A 3392.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5650;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=24.06;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3392,369,0 chrXVI 28006 . T C 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=141;Dels=0.00;FS=4.058;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=1.188;QD=20.81;ReadPosRankSum=1.707;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2967,348,0 chrXVI 28054 . A G 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.221;QD=20.11;ReadPosRankSum=1.654;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2728,312,0 chrXVI 28147 . T G 3805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.6858;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-1.603;QD=23.49;ReadPosRankSum=1.711;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3805,423,0 chrXVI 28206 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=21.27;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3267,366,0 chrXVI 28214 . T C 2878 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=20.27;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2911,324,0 chrXVI 28237 . C T 2298 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=19.15;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2331,252,0 chrXVI 28261 . C T 1918 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=100.5169;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=15.98;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1951,213,0 chrXVI 28312 . C A 2791 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=19.94;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2824,309,0 chrXVI 28409 . G A 71.51 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=145.0914;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=0.45;SB=-4.751e+01 GT:AD:DP:GQ:PL 1/1:0,22:159:12:104,12,0 chrXVI 28513 . T A 2549 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=19.17;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2582,279,0 chrXVI 28514 . T G 2415 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=18.58;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2448,279,0 chrXVI 28521 . T G 2345 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=0.181;QD=17.50;ReadPosRankSum=1.680;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2378,279,0 chrXVI 28641 . A G 3794.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=178;Dels=0.00;FS=6.195;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.826;QD=21.31;ReadPosRankSum=2.380;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:3794,435,0 chrXVI 28674 . G A 3820.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.83;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3820,411,0 chrXVI 28686 . C T 3464.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=20.02;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3464,381,0 chrXVI 28821 . G A 4170.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=21.38;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4170,462,0 chrXVI 28890 . T C 4939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=218;Dels=0.00;FS=5.992;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=1.263;QD=22.66;ReadPosRankSum=2.968;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:3,215:218:99:4939,570,0 chrXVI 28919 . T A 5586.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=22.99;SB=-2.777e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:5586,630,0 chrXVI 29021 . T C 2616 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=32.69;MQ0=0;QD=16.88;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2649,312,0 chrXVI 29036 . T C 2138 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=148;Dels=0.00;FS=15.425;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.41;MQ0=0;MQRankSum=-0.054;QD=14.45;ReadPosRankSum=2.912;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:3,145:148:99:2171,246,0 chrXVI 29041 . T A 2078 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.61;MQ0=0;QD=14.14;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2111,243,0 chrXVI 29045 . C T 2321 SnpCluster AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=15.07;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2354,264,0 chrXVI 29091 . A G 3173 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=18.89;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3206,360,0 chrXVI 29134 . A G 5007.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=19.71;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5007,573,0 chrXVI 29156 . T G 4504.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=18.16;SB=-2.425e+03 GT:AD:DP:GQ:PL 1/1:0,246:248:99:4504,507,0 chrXVI 29188 . A G 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.968;DP=219;Dels=0.00;FS=5.481;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;MQRankSum=-0.654;QD=17.01;ReadPosRankSum=2.968;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:3,215:219:99:3726,449,0 chrXVI 29202 . A C 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.118;DP=195;Dels=0.00;FS=15.005;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;MQRankSum=-1.958;QD=16.03;ReadPosRankSum=4.133;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:6,189:195:99:3158,369,0 chrXVI 29222 . G A 2441 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.79;MQ0=0;QD=13.71;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:2474,285,0 chrXVI 29253 . T A 2860 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=14.90;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:2893,333,0 chrXVI 29282 . T C 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=209;Dels=0.00;FS=5.206;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=44.13;MQ0=0;MQRankSum=-1.086;QD=14.77;ReadPosRankSum=2.881;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:4,204:209:99:3120,337,0 chrXVI 29290 . A G 3191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=218;Dels=0.00;FS=4.444;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;MQRankSum=0.838;QD=14.64;ReadPosRankSum=1.716;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:3224,375,0 chrXVI 29296 . T C 3397.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=15.73;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:3397,381,0 chrXVI 29325 . T A 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;MQRankSum=1.263;QD=14.98;ReadPosRankSum=1.660;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:3000,336,0 chrXVI 29370 . C T 3395.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=19.29;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3395,375,0 chrXVI 29433 . T G 4845.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=213;Dels=0.00;FS=3.693;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.057;QD=22.75;ReadPosRankSum=1.683;SB=-2.354e+03 GT:AD:DP:GQ:PL 1/1:1,212:213:99:4845,543,0 chrXVI 29495 . T G 4232.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.8238;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=22.04;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4232,471,0 chrXVI 29599 . G A 2865 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=133.6333;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=19.23;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:2898,327,0 chrXVI 29749 . C T 2982 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.67;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3015,327,0 chrXVI 29806 . A G 2360 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0061;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=18.73;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2393,279,0 chrXVI 29835 . G A 2516 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=17.97;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2549,288,0 chrXVI 30029 . A G 2511 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=132;Dels=0.00;FS=3.043;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;MQRankSum=-1.500;QD=19.02;ReadPosRankSum=2.412;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2544,291,0 chrXVI 30031 . G T 2643 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=19.87;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2676,291,0 chrXVI 30033 . A G 2513 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=133;Dels=0.00;FS=6.118;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;MQRankSum=-0.473;QD=18.89;ReadPosRankSum=2.886;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:3,129:133:99:2546,291,0 chrXVI 30270 . T A 2846 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.95;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2879,324,0 chrXVI 30747 . G A 4488.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.7244;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.78;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4488,486,0 chrXVI 30844 . A G 3088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=4.093;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.942;QD=22.71;ReadPosRankSum=1.707;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3121,363,0 chrXVI 31264 . G T 3615.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.0783;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.91;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:2,162:165:99:3615,411,0 chrXVI 31948 . A G 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=3.514;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.454;QD=21.20;ReadPosRankSum=1.656;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2937,339,0 chrXVI 31985 . A G 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=131;Dels=0.00;FS=8.180;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.750;QD=21.94;ReadPosRankSum=2.336;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2907,330,0 chrXVI 32017 . C T 3462.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.0444;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.88;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3462,375,0 chrXVI 33189 . G T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.64;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3599,402,0 chrXVI 33234 . G A 4133.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4133,456,0 chrXVI 33642 . A T 2543 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.19;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2576,282,0 chrXVI 33753 . T C 1616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.050;DP=74;Dels=0.00;FS=7.089;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.550;QD=21.84;ReadPosRankSum=2.250;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1649,183,0 chrXVI 33804 . T C 2608 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.50;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2641,300,0 chrXVI 33858 . A G 2502 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.17;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2535,288,0 chrXVI 33951 . T C 2119 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2152,243,0 chrXVI 34112 . G T 2717 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.03;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2750,306,0 chrXVI 34248 . C T 2955 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.22;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2988,333,0 chrXVI 34350 . A T 3893.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.5808;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.33;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3893,426,0 chrXVI 34401 . T C 3417.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.4539;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.78;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3417,393,0 chrXVI 34470 . T C 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=157;Dels=0.00;FS=2.936;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.016;QD=23.20;ReadPosRankSum=2.418;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3643,429,0 chrXVI 34506 . C T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3796,411,0 chrXVI 34574 . G A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=14.7519;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.98;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3605,393,0 chrXVI 34641 . A G 3627.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.053;QD=22.25;ReadPosRankSum=1.690;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3627,423,0 chrXVI 34674 . T C 3605.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=169;Dels=0.00;FS=6.525;HaplotypeScore=14.8157;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.560;QD=21.33;ReadPosRankSum=2.391;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3605,417,0 chrXVI 34787 . T C 2790 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.14;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2823,324,0 chrXVI 34989 . T C 2355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=111;Dels=0.01;FS=3.522;HaplotypeScore=7.4494;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-1.251;QD=21.22;ReadPosRankSum=1.668;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2388,267,0 chrXVI 35005 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.80;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2404,264,0 chrXVI 35220 . C T 3199 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=24.23;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3232,360,0 chrXVI 35313 . G T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=21.40;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,156:159:99:3402,378,0 chrXVI 35338 . T A 2977 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;QD=17.72;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3010,336,0 chrXVI 35342 . A G 2832 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=171;Dels=0.00;FS=6.525;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;MQRankSum=-1.214;QD=16.56;ReadPosRankSum=2.421;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:2,167:171:99:2865,321,0 chrXVI 35346 . T C 2629 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.81;MQ0=0;MQRankSum=-0.765;QD=15.28;ReadPosRankSum=1.652;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:2662,306,0 chrXVI 35385 . C T 2866 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.8947;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;QD=16.66;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:2899,312,0 chrXVI 35391 . A G 2656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=4.6572;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;MQRankSum=-0.933;QD=15.53;ReadPosRankSum=1.691;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:2689,280,0 chrXVI 35451 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=19.58;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2441,270,0 chrXVI 35462 . G A 2554 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=19.65;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2587,282,0 chrXVI 35512 . A G 3378.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=3.039;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=-0.639;QD=22.82;ReadPosRankSum=2.284;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3378,387,0 chrXVI 35541 . C T 4400.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.9462;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=23.91;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4400,492,0 chrXVI 35577 . G A 4763.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=24.18;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4763,516,0 chrXVI 35664 . G A 2671 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=19.64;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2704,294,0 chrXVI 35667 . G A 2688 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=18.41;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2721,291,0 chrXVI 35673 . G T 2509 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=16.40;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2542,282,0 chrXVI 35711 . C T 2993 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=16.72;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3026,330,0 chrXVI 35724 . T C 3075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;MQRankSum=-0.689;QD=16.53;ReadPosRankSum=1.713;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3108,354,0 chrXVI 35760 . C T 3648.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.38;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3648,408,0 chrXVI 35776 . G A 3204.99 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=20.03;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3238,357,0 chrXVI 35931 . C T 3700.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=23.87;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3700,405,0 chrXVI 36074 . T C 2094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=3.432;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=-1.219;QD=19.21;ReadPosRankSum=1.700;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2127,240,0 chrXVI 36081 . C T 2028 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=19.31;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2061,225,0 chrXVI 36100 . T C 2042 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.02;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2075,228,0 chrXVI 36132 . A T 2166 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.00;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2199,249,0 chrXVI 36252 . G C 2574 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.38;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2607,297,0 chrXVI 36315 . G A 2958 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=22.58;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2991,324,0 chrXVI 36342 . G A 3022 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.25;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3055,330,0 chrXVI 36372 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.17;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3115,339,0 chrXVI 36468 . G A 4273.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.14;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4273,462,0 chrXVI 36549 . C T 3061 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.02;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3094,336,0 chrXVI 36568 . G A 2799 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.53;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2832,303,0 chrXVI 36689 . T A 4256.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.64;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4256,459,0 chrXVI 36714 . A G 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=175;Dels=0.00;FS=3.772;HaplotypeScore=4.6616;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=1.334;QD=21.61;ReadPosRankSum=1.692;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3781,423,0 chrXVI 36818 . G A 4348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.0346;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=-0.179;QD=24.85;ReadPosRankSum=-0.080;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4348,453,0 chrXVI 36977 . C T 2812 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.53;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2845,312,0 chrXVI 37078 . C T 4480.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.83;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4480,486,0 chrXVI 37088 . G A 4580.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=7.1687;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.73;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4580,498,0 chrXVI 37233 . A G 3868.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=22.23;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3868,450,0 chrXVI 37347 . A C 4527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-0.146;QD=23.46;ReadPosRankSum=1.696;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:1,189:193:99:4527,516,0 chrXVI 37424 . G A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.8968;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=17.56;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:3582,390,0 chrXVI 37447 . C A 2779 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.53;MQ0=0;QD=15.44;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2812,309,0 chrXVI 37452 . T A 2641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.17;MQ0=0;MQRankSum=-0.315;QD=15.01;ReadPosRankSum=1.712;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:2674,294,0 chrXVI 37458 . T C 2474 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.24;MQ0=0;QD=13.74;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2507,291,0 chrXVI 37477 . T C 2429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.435;DP=178;Dels=0.00;FS=5.961;HaplotypeScore=3.5402;MLEAC=2;MLEAF=1.00;MQ=35.88;MQ0=0;MQRankSum=-2.520;QD=13.65;ReadPosRankSum=2.215;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:3,175:178:99:2462,251,0 chrXVI 37482 . T C 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.063;DP=176;Dels=0.00;FS=2.999;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=37.45;MQ0=0;MQRankSum=-2.087;QD=13.27;ReadPosRankSum=1.361;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:2369,260,0 chrXVI 37527 . G A 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.635;DP=162;Dels=0.00;FS=3.092;HaplotypeScore=5.1952;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;MQRankSum=-1.711;QD=17.14;ReadPosRankSum=-0.054;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:2810,301,0 chrXVI 37556 . T C 2691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=161;Dels=0.00;FS=3.376;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=0.312;QD=16.71;ReadPosRankSum=1.668;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:2724,321,0 chrXVI 37569 . C T 2657 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.6995;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=15.01;SB=-2.261e+03 GT:AD:DP:GQ:PL 1/1:0,173:177:99:2690,297,0 chrXVI 37575 . G A 2496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=172;Dels=0.00;FS=3.165;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=-1.611;QD=14.51;ReadPosRankSum=1.611;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:2529,252,0 chrXVI 37721 . A C 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.270;DP=155;Dels=0.00;FS=3.528;HaplotypeScore=11.3400;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=1.332;QD=17.67;ReadPosRankSum=3.075;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:7,144:155:99:2772,293,0 chrXVI 37722 . G A 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.866;DP=154;Dels=0.03;FS=3.071;HaplotypeScore=11.3400;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=-0.890;QD=18.47;ReadPosRankSum=-1.323;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2877,294,0 chrXVI 37911 . A G 5279.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.05;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5279,588,0 chrXVI 37953 . T C 4998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.220;QD=22.72;ReadPosRankSum=1.716;SB=-2.451e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4998,585,0 chrXVI 38082 . A G 5399.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.472;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=14.5129;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.407;QD=21.60;ReadPosRankSum=2.536;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:3,246:250:99:5399,598,0 chrXVI 38237 . G A 4327.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.01;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4327,480,0 chrXVI 38357 . G A 3798.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.83;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3798,417,0 chrXVI 38388 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.6320;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.51;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3116,336,0 chrXVI 38391 . G A 2992 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.6320;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=19.30;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3025,336,0 chrXVI 38453 . C A 2800 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.74;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2833,309,0 chrXVI 38493 . T G 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=146;Dels=0.00;FS=3.424;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.642;QD=21.28;ReadPosRankSum=1.708;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:1,142:146:99:3140,351,0 chrXVI 38521 . G A 2901 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.9501;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.15;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2934,315,0 chrXVI 38642 . T C 2682 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=21.46;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2715,306,0 chrXVI 38802 . A G 2003 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.45;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2036,234,0 chrXVI 38867 . C G 1752 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=20.37;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,82:86:99:1785,204,0 chrXVI 38894 . G A 552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.267;DP=67;Dels=0.00;FS=6.500;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;MQRankSum=0.595;QD=8.24;ReadPosRankSum=1.474;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:75:585,75,0 chrXVI 38907 . G T 1049 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=16.92;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1082,123,0 chrXVI 39105 . A G 1863 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.18;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1896,216,0 chrXVI 39420 . C T 3287.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3287,378,0 chrXVI 39933 . T C 3378.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.11;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3378,381,0 chrXVI 39990 . A G 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.084;QD=21.57;ReadPosRankSum=2.413;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2945,330,0 chrXVI 40298 . A T 2821 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.57;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2854,309,0 chrXVI 40755 . T A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=10.1109;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.70;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3266,348,0 chrXVI 40976 . T C 3768.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=179;Dels=0.00;FS=3.012;HaplotypeScore=10.4318;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.967;QD=21.05;ReadPosRankSum=2.422;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3768,432,0 chrXVI 40996 . T C 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=-1.631;QD=19.25;ReadPosRankSum=1.712;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3349,381,0 chrXVI 41008 . G C 3114 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=164.2578;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=17.90;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3147,354,0 chrXVI 41264 . T C 6002.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.262;DP=289;Dels=0.00;FS=9.119;HaplotypeScore=22.2522;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-0.587;QD=20.77;ReadPosRankSum=3.413;SB=-3.421e+03 GT:AD:DP:GQ:PL 1/1:4,285:289:99:6002,704,0 chrXVI 41379 . T A 5311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=245;Dels=0.00;FS=3.621;HaplotypeScore=16.7264;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=0.284;QD=21.68;ReadPosRankSum=1.718;SB=-2.891e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:5311,573,0 chrXVI 41672 . T C 4250.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.91;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4250,483,0 chrXVI 42125 . G T 5960.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.75;SB=-2.785e+03 GT:AD:DP:GQ:PL 1/1:0,250:251:99:5960,654,0 chrXVI 42254 . A G 6011.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=279;Dels=0.00;FS=6.043;HaplotypeScore=25.8549;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.769;QD=21.54;ReadPosRankSum=2.975;SB=-3.221e+03 GT:AD:DP:GQ:PL 1/1:3,275:279:99:6011,690,0 chrXVI 42781 . T G 2765 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2798,315,0 chrXVI 42883 . C A 1476 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.8997;MLEAC=2;MLEAF=1.00;MQ=60.46;MQ0=0;QD=21.09;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1509,168,0 chrXVI 43002 . C G 1352 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;QD=21.12;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1385,159,0 chrXVI 43494 . G A 4555.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=21.4610;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.11;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4555,504,0 chrXVI 43601 . A G 4497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=218;Dels=0.00;FS=6.047;HaplotypeScore=14.5016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.782;QD=20.63;ReadPosRankSum=2.940;SB=-2.757e+03 GT:AD:DP:GQ:PL 1/1:3,214:218:99:4497,501,0 chrXVI 43754 . C T 3979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.451;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.4294;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.607;QD=20.10;ReadPosRankSum=1.714;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:3979,424,0 chrXVI 43802 . C T 4580.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4580,495,0 chrXVI 43865 . T C 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=149;Dels=0.00;FS=3.024;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.059;QD=23.88;ReadPosRankSum=2.383;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:2,145:149:99:3558,405,0 chrXVI 44051 . A C 3691.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=174;Dels=0.00;FS=3.490;HaplotypeScore=19.8076;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.926;QD=21.21;ReadPosRankSum=1.692;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3691,417,0 chrXVI 44122 . G T 3991.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.81;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3991,435,0 chrXVI 44148 . G A 3511.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.2216;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.88;SB=-1.951e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3511,381,0 chrXVI 44191 . G A 3204 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.10;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3237,348,0 chrXVI 44258 . A G 2949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.878;QD=20.77;ReadPosRankSum=1.708;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2982,339,0 chrXVI 44290 . A G 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-1.388;QD=20.44;ReadPosRankSum=1.706;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2731,300,0 chrXVI 44377 . T G 2433 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8225;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.34;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2466,279,0 chrXVI 44552 . T C 2821 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.21;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2854,324,0 chrXVI 44689 . T C 3593.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=22.46;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3593,408,0 chrXVI 44755 . T C 5049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.705;DP=241;Dels=0.00;FS=7.963;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-0.139;QD=20.95;ReadPosRankSum=3.783;SB=-2.455e+03 GT:AD:DP:GQ:PL 1/1:5,236:241:99:5049,570,0 chrXVI 44764 . T C 4874.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=243;Dels=0.00;FS=2.845;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-1.141;QD=20.06;ReadPosRankSum=2.389;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:2,240:243:99:4874,570,0 chrXVI 44799 . G A 4773.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.03;SB=-2.370e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4773,516,0 chrXVI 44845 . G C 3949.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=19.2029;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.36;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,190:194:99:3949,447,0 chrXVI 44920 . C G 3439.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=15.78;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:3439,405,0 chrXVI 44929 . G A 3501.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=16.21;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:3501,381,0 chrXVI 45292 . C T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.24;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3310,360,0 chrXVI 45370 . T G 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.078;DP=112;Dels=0.00;FS=159.617;HaplotypeScore=17.5015;MLEAC=1;MLEAF=0.500;MQ=55.30;MQ0=0;MQRankSum=-1.813;QD=0.41;ReadPosRankSum=-3.235;SB=0.011 GT:AD:DP:GQ:PL 0/1:76,36:112:76:76,0,1384 chrXVI 45800 . G T 2515 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2548,276,0 chrXVI 45934 . G A 4254.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.02;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4254,459,0 chrXVI 45974 . A G 3428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=4.055;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.275;QD=23.64;ReadPosRankSum=1.708;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3428,390,0 chrXVI 46114 . C A 4846.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.11;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4846,520,0 chrXVI 46273 . A G 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=2.812;HaplotypeScore=4.6810;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-0.466;QD=20.84;ReadPosRankSum=2.405;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3460,384,0 chrXVI 46282 . T C 3171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=4.021;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=1.100;QD=19.82;ReadPosRankSum=1.667;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3204,360,0 chrXVI 46291 . A G 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=151;Dels=0.00;FS=5.371;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-0.193;QD=18.09;ReadPosRankSum=1.193;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:3,148:151:99:2764,301,0 chrXVI 46435 . T C 3270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=155;Dels=0.00;FS=3.708;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.034;QD=21.10;ReadPosRankSum=1.710;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3270,363,0 chrXVI 46547 . A G 1674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=0.211;QD=20.41;ReadPosRankSum=1.690;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1707,198,0 chrXVI 46548 . T C 1656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.403;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=0.492;QD=20.44;ReadPosRankSum=1.689;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1689,192,0 chrXVI 46638 . T A 2339 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.71;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2372,258,0 chrXVI 46798 . G T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0400;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=25.13;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3794,414,0 chrXVI 46831 . A G 4137.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.01;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4137,489,0 chrXVI 47052 . C G 3059 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.3617;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.32;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3092,354,0 chrXVI 47208 . G A 2615 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.9482;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.79;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2648,291,0 chrXVI 47273 . T C 2916 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=11.3004;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.96;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2949,336,0 chrXVI 47305 . T G 3083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.760;DP=140;Dels=0.00;FS=12.214;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.105;QD=22.02;ReadPosRankSum=3.635;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:5,134:140:99:3116,351,0 chrXVI 47641 . C T 4907.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=11.4557;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.00;SB=-2.819e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4907,540,0 chrXVI 48109 . T C 4728.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=214;Dels=0.00;FS=3.579;HaplotypeScore=13.7209;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.507;QD=22.09;ReadPosRankSum=1.699;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:1,211:214:99:4728,546,0 chrXVI 48265 . T C 4060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=193;Dels=0.00;FS=3.126;HaplotypeScore=18.8326;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.315;QD=21.04;ReadPosRankSum=1.587;SB=-2.222e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:4060,459,0 chrXVI 48472 . T G 4869.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=228;Dels=0.00;FS=2.833;HaplotypeScore=19.9305;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.913;QD=21.36;ReadPosRankSum=2.417;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:2,222:228:99:4869,543,0 chrXVI 49036 . A G 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.892;QD=21.55;ReadPosRankSum=1.697;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2166,255,0 chrXVI 49088 . C T 2649 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2682,291,0 chrXVI 49183 . G A 2624 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2657,291,0 chrXVI 49779 . C T 4031.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=12.8483;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4031,441,0 chrXVI 50083 . A G 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=159;Dels=0.00;FS=6.675;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.240;QD=23.97;ReadPosRankSum=2.419;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3812,423,0 chrXVI 50217 . G A 3105 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.35;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3138,339,0 chrXVI 50505 . A T 3147 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3180,351,0 chrXVI 50580 . G A 3614.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.75;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3614,396,0 chrXVI 50685 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.070;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.9221;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.116;QD=22.29;ReadPosRankSum=1.569;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:2,157:162:99:3611,399,0 chrXVI 50846 . A G 3020 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.87;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3053,345,0 chrXVI 50850 . A G 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=0.688;QD=19.24;ReadPosRankSum=1.685;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2861,330,0 chrXVI 50873 . G A 2745 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.64;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2778,297,0 chrXVI 51430 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.4192;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2704,303,0 chrXVI 52021 . C T 2953 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2986,333,0 chrXVI 52066 . G A 3869.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.88;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3869,423,0 chrXVI 52180 . G A 2821 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.51;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2854,318,0 chrXVI 52231 . G A 2919 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2952,327,0 chrXVI 52291 . T A 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=4.199;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.439;QD=23.66;ReadPosRankSum=1.708;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3360,360,0 chrXVI 52375 . A C 2685 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.6130;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.14;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2718,312,0 chrXVI 52500 . G A 3213.98 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3247,354,0 chrXVI 52965 . A G 1693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=1.199;QD=21.71;ReadPosRankSum=1.688;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1726,198,0 chrXVI 53017 . C G 1870 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.78;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1903,216,0 chrXVI 53041 . T A 1464 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.87;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1497,162,0 chrXVI 53120 . A T 1092 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.04;FS=0.000;HaplotypeScore=20.9075;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=21.84;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1125,123,0 chrXVI 53199 . A G 1302 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=18.34;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1335,156,0 chrXVI 53226 . G A 1155 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=19.58;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1188,132,0 chrXVI 53320 . G A 2166 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=25.79;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2199,240,0 chrXVI 53355 . G C 2492 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=22.25;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2525,285,0 chrXVI 53378 . A G 2295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;MQRankSum=0.000;QD=19.45;ReadPosRankSum=1.702;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2328,267,0 chrXVI 53381 . T C 2245 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=19.35;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2278,258,0 chrXVI 53425 . A T 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;MQRankSum=-0.296;QD=17.09;ReadPosRankSum=1.648;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2135,237,0 chrXVI 53429 . C T 2094 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.1434;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=16.49;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2127,234,0 chrXVI 53867 . A G 3674.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=178;Dels=0.00;FS=2.573;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.880;QD=20.64;ReadPosRankSum=2.914;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:3,173:178:99:3674,414,0 chrXVI 53945 . C T 3137 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3170,348,0 chrXVI 54374 . G A 3155 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.97;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3188,351,0 chrXVI 54422 . G T 3736.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.4326;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.60;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3736,411,0 chrXVI 54725 . G A 3989.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.03;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3989,444,0 chrXVI 54755 . T C 4169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.7805;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.205;QD=22.41;ReadPosRankSum=1.713;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:4169,480,0 chrXVI 54810 . T G 4224.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.01;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4224,498,0 chrXVI 55232 . C T 4168.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.41;SB=-2.229e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4168,456,0 chrXVI 55257 . G T 3986.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.14;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3986,429,0 chrXVI 55305 . A G 4177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=198;Dels=0.00;FS=3.235;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.347;QD=21.10;ReadPosRankSum=1.697;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4177,480,0 chrXVI 55362 . C T 3648.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=22.38;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:3648,396,0 chrXVI 55419 . C T 2993 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=20.93;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3026,342,0 chrXVI 55423 . T A 2978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=0.400;QD=20.68;ReadPosRankSum=1.659;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3011,342,0 chrXVI 55474 . G A 3131 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.07;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3164,342,0 chrXVI 55625 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=23.11;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2968,321,0 chrXVI 56135 . T C 371 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.88;MQ0=0;QD=7.42;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:45:404,45,0 chrXVI 56220 . T C 1270 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=32.40;MQ0=1;QD=17.16;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1303,153,0 chrXVI 56290 . T C 1364 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=33.82;MQ0=0;QD=16.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1397,168,0 chrXVI 56344 . C T 225 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=13.5504;MLEAC=2;MLEAF=1.00;MQ=30.14;MQ0=0;QD=6.08;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,34:37:30:258,30,0 chrXVI 56346 . T A 201.01 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=13.5756;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=6.70;SB=-2.375e-02 GT:AD:DP:GQ:PL 1/1:0,30:30:27:234,27,0 chrXVI 62777 . C T 1174 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;QD=24.98;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1207,132,0 chrXVI 62944 . G A 1108 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=61.2819;MLEAC=2;MLEAF=1.00;MQ=37.20;MQ0=0;QD=15.39;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1141,132,0 chrXVI 62972 . T C 1079 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=12.85;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1112,129,0 chrXVI 62987 . A C 1285 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.22;MQ0=0;QD=12.85;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1318,150,0 chrXVI 63000 . C T 1439 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.9774;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;QD=13.45;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1472,165,0 chrXVI 63005 . C T 1404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.052;DP=107;Dels=0.00;FS=3.134;HaplotypeScore=4.8823;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;MQRankSum=-0.372;QD=13.12;ReadPosRankSum=0.826;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1437,139,0 chrXVI 63101 . T A 2528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=109;Dels=0.00;FS=2.601;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.702;QD=23.19;ReadPosRankSum=2.895;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2561,279,0 chrXVI 63210 . T C 2685 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=22.01;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2718,315,0 chrXVI 63351 . T G 3051 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.77;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3084,342,0 chrXVI 63384 . G A 3047 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.74;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3080,342,0 chrXVI 63723 . T A 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=141;Dels=0.00;FS=7.319;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=-0.619;QD=21.70;ReadPosRankSum=2.345;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3093,333,0 chrXVI 63740 . A G 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=137;Dels=0.00;FS=3.040;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-1.068;QD=19.85;ReadPosRankSum=2.414;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2752,318,0 chrXVI 64140 . A C 1662 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.21;MQ0=0;QD=20.77;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1695,195,0 chrXVI 64155 . T C 1475 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=19.16;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1508,180,0 chrXVI 64165 . G A 1466 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=54.1245;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=20.94;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1499,165,0 chrXVI 64166 . T G 1379 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=54.1245;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=19.70;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1412,165,0 chrXVI 64204 . C T 1756 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=0;QD=15.82;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1789,198,0 chrXVI 64229 . G C 2009 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=14.77;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2042,240,0 chrXVI 64299 . C T 1337 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.04;FS=0.000;HaplotypeScore=10.5225;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=0;QD=9.69;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:1370,150,0 chrXVI 64309 . G T 1188 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=0;QD=9.82;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1221,135,0 chrXVI 64310 . C T 1234 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=0;QD=10.20;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1267,141,0 chrXVI 64316 . G A 1130 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.35;MQ0=0;QD=9.11;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1163,132,0 chrXVI 64326 . T C 852 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;QD=7.82;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:885,105,0 chrXVI 64540 . A C 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;MQRankSum=0.524;QD=22.94;ReadPosRankSum=1.678;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2992,339,0 chrXVI 64673 . C A 2635 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.52;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2668,291,0 chrXVI 65188 . G A 6493.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.23;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:1,262:268:99:6493,697,0 chrXVI 65676 . C T 3105 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.8170;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.29;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3138,351,0 chrXVI 66210 . A G 3950.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=175;Dels=0.00;FS=3.034;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.376;QD=22.57;ReadPosRankSum=2.407;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:2,171:175:99:3950,447,0 chrXVI 66237 . C T 4587.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.05;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4587,513,0 chrXVI 66393 . C T 5481.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.73;SB=-2.498e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5481,589,0 chrXVI 66527 . A G 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=150;Dels=0.00;FS=6.050;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.658;QD=20.93;ReadPosRankSum=2.886;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:3172,357,0 chrXVI 66703 . C T 3807.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.6616;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.38;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3807,417,0 chrXVI 68564 . T C 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=153;Dels=0.00;FS=7.022;HaplotypeScore=11.8511;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.124;QD=20.05;ReadPosRankSum=2.336;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:2,150:153:99:3101,360,0 chrXVI 68677 . A T 3397.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.10;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3397,384,0 chrXVI 68882 . G C 3294.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=21.67;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3294,387,0 chrXVI 69311 . A T 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=120;Dels=0.00;FS=3.009;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.200;QD=20.12;ReadPosRankSum=2.366;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2448,267,0 chrXVI 69319 . A G 2098 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.40;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2131,249,0 chrXVI 69340 . T G 2045 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=18.26;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2078,237,0 chrXVI 69402 . T A 2486 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.43;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2519,273,0 chrXVI 69825 . T C 2707 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.2922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2740,309,0 chrXVI 69892 . T A 2973 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6185;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.54;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3006,330,0 chrXVI 70081 . C T 2469 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.92;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2502,282,0 chrXVI 70402 . A G 3331.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3331,372,0 chrXVI 70567 . A C 4784.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.92;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4784,543,0 chrXVI 70801 . C T 4772.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=16.7652;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.51;SB=-2.302e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4772,522,0 chrXVI 70885 . T C 4706.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4706,555,0 chrXVI 71215 . T C 2250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=98;Dels=0.00;FS=3.380;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.247;QD=22.96;ReadPosRankSum=1.661;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2283,255,0 chrXVI 71325 . C G 2549 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.28;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2582,288,0 chrXVI 71516 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.47;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3249,366,0 chrXVI 71576 . G T 2371 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.02;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2404,267,0 chrXVI 71603 . A G 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.758;QD=21.31;ReadPosRankSum=1.696;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2079,240,0 chrXVI 71807 . G A 2726 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.0271;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.56;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2759,297,0 chrXVI 72872 . T C 4379.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.1258;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.124;QD=22.34;ReadPosRankSum=1.714;SB=-2.356e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4379,492,0 chrXVI 73071 . G A 3072 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.19;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3105,336,0 chrXVI 73338 . C G 1691 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.16;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1724,189,0 chrXVI 73474 . T C 5493.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.315;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.246;QD=25.43;ReadPosRankSum=3.283;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:4,212:216:99:5493,618,0 chrXVI 73851 . T C 2222 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.1695;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.52;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2255,267,0 chrXVI 74040 . G C 1474 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.68;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1507,171,0 chrXVI 74327 . C T 6328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=17.0953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.247;QD=25.11;ReadPosRankSum=1.292;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,251:252:99:6328,690,0 chrXVI 74884 . G C 2308 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.32;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2341,264,0 chrXVI 74885 . C T 2425 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=18.95;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2458,273,0 chrXVI 75307 . G C 7424.01 PASS AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=7.5018;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.57;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,328:329:99:7424,831,0 chrXVI 75329 . T C 6939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.004;QD=21.09;ReadPosRankSum=2.397;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:2,327:329:99:6939,795,0 chrXVI 75355 . A G 6142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=299;Dels=0.00;FS=4.173;HaplotypeScore=8.7757;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=0.779;QD=20.54;ReadPosRankSum=1.709;SB=-2.948e+03 GT:AD:DP:GQ:PL 1/1:1,298:299:99:6142,684,0 chrXVI 75921 . G A 3511.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.72;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3511,381,0 chrXVI 76166 . T C 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=1.199;QD=22.05;ReadPosRankSum=1.599;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4013,450,0 chrXVI 76198 . C T 4094.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.25;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4094,453,0 chrXVI 76390 . A G 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=233;Dels=0.00;FS=11.115;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=0.022;QD=16.59;ReadPosRankSum=2.935;SB=-2.458e+03 GT:AD:DP:GQ:PL 1/1:3,228:233:99:3865,447,0 chrXVI 76413 . G C 3501.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=17.9822;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=16.21;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:3501,402,0 chrXVI 76532 . A G 3886.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=16.82;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:3886,444,0 chrXVI 76538 . C T 3953.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=17.49;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:3953,429,0 chrXVI 76639 . A G 4065.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;MQRankSum=-0.933;QD=19.54;ReadPosRankSum=1.715;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:1,207:208:99:4065,480,0 chrXVI 76655 . G C 3852.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=19.65;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3852,432,0 chrXVI 76657 . A C 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=201;Dels=0.00;FS=3.166;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=-1.523;QD=18.96;ReadPosRankSum=1.715;SB=-2.411e+03 GT:AD:DP:GQ:PL 1/1:1,198:201:99:3811,429,0 chrXVI 76702 . T C 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=20.0204;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.840;QD=18.87;ReadPosRankSum=1.715;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:3830,435,0 chrXVI 76987 . T C 3899.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.10;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:3899,435,0 chrXVI 77082 . G A 4077.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.57;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,185:189:99:4077,444,0 chrXVI 77183 . C T 3378.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=9.0273;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.38;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3378,372,0 chrXVI 77339 . C T 3210.99 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3244,351,0 chrXVI 77440 . A G 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.295;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.907;QD=20.84;ReadPosRankSum=1.705;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2659,309,0 chrXVI 77452 . A G 2729 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=20.52;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2762,306,0 chrXVI 77707 . G C 4314.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.97;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4314,486,0 chrXVI 78091 . A G 4134.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=183;Dels=0.00;FS=3.522;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.713;QD=22.59;ReadPosRankSum=1.694;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:1,179:183:99:4134,477,0 chrXVI 78181 . T C 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=191;Dels=0.00;FS=3.023;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.765;QD=21.18;ReadPosRankSum=2.411;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:2,189:191:99:4046,462,0 chrXVI 78797 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2852,306,0 chrXVI 78895 . C G 3319.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=21.01;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,153:158:99:3319,396,0 chrXVI 79151 . C T 2071 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=107.1880;MLEAC=2;MLEAF=1.00;MQ=37.23;MQ0=0;QD=13.28;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2104,225,0 chrXVI 79182 . T C 2063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=6.859;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.23;MQ0=0;MQRankSum=-1.228;QD=12.21;ReadPosRankSum=2.421;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:2096,243,0 chrXVI 79268 . C A 2910 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.09;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2943,318,0 chrXVI 79518 . A G 2522 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=21.02;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2555,285,0 chrXVI 79588 . A G 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=132;Dels=0.02;FS=3.185;HaplotypeScore=13.2528;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.696;QD=20.49;ReadPosRankSum=1.678;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,126:130:99:2738,306,0 chrXVI 79670 . T A 3359.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.9726;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.25;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3359,375,0 chrXVI 79687 . G T 3022 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.3002;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.42;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3055,339,0 chrXVI 79913 . T C 3913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.7076;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.370;QD=21.98;ReadPosRankSum=1.713;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3913,444,0 chrXVI 79964 . T G 4767.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=7.5991;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.17;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4767,540,0 chrXVI 79994 . C T 5175.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.0360;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.96;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5175,564,0 chrXVI 80417 . A G 3097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=151;Dels=0.00;FS=2.793;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.156;QD=20.51;ReadPosRankSum=2.351;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,148:151:99:3130,354,0 chrXVI 80419 . C T 3230.05 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.39;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3264,363,0 chrXVI 80469 . T C 2457 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=18.61;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2490,282,0 chrXVI 80537 . G A 4147.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.1984;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.83;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4147,459,0 chrXVI 80580 . G A 3632.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.15;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3632,396,0 chrXVI 80639 . T A 2612 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=14.7432;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.14;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2645,291,0 chrXVI 80834 . T C 2491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=116;Dels=0.00;FS=3.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-0.054;QD=21.47;ReadPosRankSum=2.363;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:2,112:116:99:2524,282,0 chrXVI 80857 . A G 2821 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.21;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2854,327,0 chrXVI 80890 . G A 2907 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=21.37;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2940,327,0 chrXVI 80908 . A G 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.9317;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=0.852;QD=19.87;ReadPosRankSum=1.705;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2577,291,0 chrXVI 80992 . A G 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=140;Dels=0.00;FS=12.320;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-2.158;QD=19.17;ReadPosRankSum=2.907;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:2717,309,0 chrXVI 81006 . C T 2578 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=18.96;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2611,282,0 chrXVI 81007 . A G 2478 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=4.678;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;MQRankSum=0.151;QD=17.70;ReadPosRankSum=1.657;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2511,288,0 chrXVI 81010 . T A 2452 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=-1.281;QD=17.03;ReadPosRankSum=2.415;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2485,285,0 chrXVI 81079 . A G 4505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=200;Dels=0.00;FS=4.684;HaplotypeScore=9.7598;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.079;QD=22.53;ReadPosRankSum=1.714;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:1,196:200:99:4505,507,0 chrXVI 81157 . G A 3125 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.48;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3158,342,0 chrXVI 81248 . C T 5015.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.4272;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.69;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5015,540,0 chrXVI 81346 . C T 4097.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.55;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4097,444,0 chrXVI 81619 . A G 4562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=208;Dels=0.00;FS=6.084;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.074;QD=21.93;ReadPosRankSum=2.926;SB=-2.485e+03 GT:AD:DP:GQ:PL 1/1:3,201:208:99:4562,513,0 chrXVI 81697 . G A 5100.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.67;SB=-2.683e+03 GT:AD:DP:GQ:PL 1/1:0,224:225:99:5100,555,0 chrXVI 81763 . G A 5431.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=237;Dels=0.00;FS=3.531;HaplotypeScore=18.7300;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.904;QD=22.92;ReadPosRankSum=-1.356;SB=-2.618e+03 GT:AD:DP:GQ:PL 1/1:1,233:237:99:5431,591,0 chrXVI 81896 . T C 4423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.3500;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.243;QD=21.06;ReadPosRankSum=1.715;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:1,206:210:99:4423,516,0 chrXVI 81970 . C T 5065.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.42;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:0,247:248:99:5065,555,0 chrXVI 82072 . T C 4237.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=17.1038;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.99;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,208:212:99:4237,477,0 chrXVI 82180 . T C 4572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=214;Dels=0.00;FS=6.124;HaplotypeScore=15.8544;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.318;QD=21.36;ReadPosRankSum=2.380;SB=-2.535e+03 GT:AD:DP:GQ:PL 1/1:2,210:214:99:4572,525,0 chrXVI 82234 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.7176;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=1.272;QD=21.95;ReadPosRankSum=1.652;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3819,420,0 chrXVI 82638 . A G 2438 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=20.32;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2471,276,0 chrXVI 82643 . T C 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=0.586;QD=18.14;ReadPosRankSum=1.705;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2337,273,0 chrXVI 82817 . T A 3061 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.4999;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.01;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3094,339,0 chrXVI 82826 . G A 3139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.222;DP=164;Dels=0.00;FS=3.609;HaplotypeScore=4.3343;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=1.498;QD=19.14;ReadPosRankSum=0.436;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3172,323,0 chrXVI 82882 . G A 2595 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.30;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2628,285,0 chrXVI 83078 . G A 3860.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.06;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3860,426,0 chrXVI 83645 . G C 4766.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=21.5711;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.09;SB=-2.621e+03 GT:AD:DP:GQ:PL 1/1:0,222:226:99:4766,552,0 chrXVI 83873 . A G 5173.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=236;Dels=0.00;FS=3.942;HaplotypeScore=18.2838;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.498;QD=21.92;ReadPosRankSum=1.717;SB=-2.422e+03 GT:AD:DP:GQ:PL 1/1:1,232:236:99:5173,573,0 chrXVI 84137 . C T 5348.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=11.3477;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.39;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,247:250:99:5348,580,0 chrXVI 84286 . A G 2869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.853;DP=159;Dels=0.00;FS=9.999;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.760;QD=18.04;ReadPosRankSum=4.436;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:7,151:159:99:2902,327,0 chrXVI 84812 . T C 2862 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.68;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2895,336,0 chrXVI 84945 . G A 4631.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=16.8520;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.04;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4631,519,0 chrXVI 85148 . T C 5051.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=23.83;SB=-2.576e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:5051,567,0 chrXVI 85175 . C T 4586.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.8749;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=22.59;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4586,501,0 chrXVI 85280 . G A 2971 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.0159;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.17;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3004,330,0 chrXVI 85327 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=20.05;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2980,339,0 chrXVI 85358 . T C 2231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=4.360;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;MQRankSum=-1.362;QD=16.90;ReadPosRankSum=1.706;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2264,252,0 chrXVI 85364 . C T 2077 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=15.27;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2110,231,0 chrXVI 85399 . G A 884 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=109.4099;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=7.62;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:917,105,0 chrXVI 85516 . A C 4889.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=15.9657;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.45;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,196:200:99:4889,546,0 chrXVI 85601 . T C 4306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=192;Dels=0.00;FS=2.558;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=0.000;QD=22.43;ReadPosRankSum=2.806;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:3,189:192:99:4306,480,0 chrXVI 85621 . T C 3864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.0953;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=0.151;QD=21.00;ReadPosRankSum=1.694;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3864,453,0 chrXVI 85729 . A G 4648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=19.6256;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.086;QD=21.03;ReadPosRankSum=1.701;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:1,220:221:99:4648,519,0 chrXVI 85969 . T C 3434.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0697;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=0.364;QD=20.56;ReadPosRankSum=1.711;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,161:167:99:3434,393,0 chrXVI 85993 . T C 3221.92 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=160;Dels=0.00;FS=6.001;HaplotypeScore=6.5553;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.025;QD=20.14;ReadPosRankSum=2.280;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:3,155:160:99:3255,369,0 chrXVI 86188 . G A 4344.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.48;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4344,471,0 chrXVI 86314 . T G 2747 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.3570;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.33;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2780,324,0 chrXVI 86390 . C T 5250.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.9110;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.23;SB=-2.608e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:5250,570,0 chrXVI 86437 . T C 5874.01 PASS AC=2;AF=1.00;AN=2;DP=251;Dels=0.00;FS=0.000;HaplotypeScore=10.8491;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=23.40;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,249:251:99:5874,663,0 chrXVI 86479 . A C 6405.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=24.35;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,262:263:99:6405,732,0 chrXVI 86542 . T C 6548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.421;DP=282;Dels=0.00;FS=9.949;HaplotypeScore=8.7565;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.844;QD=23.22;ReadPosRankSum=4.468;SB=-2.474e+03 GT:AD:DP:GQ:PL 1/1:7,275:282:99:6548,738,0 chrXVI 86653 . T C 6511.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=333;Dels=0.00;FS=3.755;HaplotypeScore=18.9283;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=0.262;QD=19.55;ReadPosRankSum=1.722;SB=-3.422e+03 GT:AD:DP:GQ:PL 1/1:1,329:333:99:6511,773,0 chrXVI 86686 . G A 5739.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=3.9288;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=18.34;SB=-3.360e+03 GT:AD:DP:GQ:PL 1/1:0,313:313:99:5739,621,0 chrXVI 86689 . T C 4911.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=16.54;SB=-3.027e+03 GT:AD:DP:GQ:PL 1/1:0,295:297:99:4911,576,0 chrXVI 86716 . G A 4960.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=6.8422;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=17.40;SB=-2.889e+03 GT:AD:DP:GQ:PL 1/1:1,283:285:99:4960,552,0 chrXVI 86878 . C T 4361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=0.990;QD=23.57;ReadPosRankSum=0.742;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,182:185:99:4361,458,0 chrXVI 86905 . C T 4254.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=24.31;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4254,462,0 chrXVI 87058 . G T 3208 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.94;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3241,348,0 chrXVI 87239 . A G 4808.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=198;Dels=0.00;FS=4.159;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-0.752;QD=24.28;ReadPosRankSum=1.697;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4808,549,0 chrXVI 87311 . A C 4326.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.250;DP=191;Dels=0.00;FS=8.962;HaplotypeScore=7.9676;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=1.037;QD=22.65;ReadPosRankSum=3.414;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:4,187:191:99:4326,483,0 chrXVI 87377 . T A 4491.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=190;Dels=0.00;FS=6.613;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.123;QD=23.64;ReadPosRankSum=2.372;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4491,483,0 chrXVI 87404 . C T 4461.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.5641;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.42;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4461,498,0 chrXVI 87434 . A G 4522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.660;DP=205;Dels=0.00;FS=4.252;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.767;QD=22.06;ReadPosRankSum=3.087;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:5,200:205:99:4522,494,0 chrXVI 87500 . T C 3546.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=185;Dels=0.00;FS=3.203;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;MQRankSum=0.282;QD=19.17;ReadPosRankSum=1.694;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:3546,405,0 chrXVI 87503 . T G 3482.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=181;Dels=0.00;FS=3.237;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;MQRankSum=-0.480;QD=19.24;ReadPosRankSum=1.634;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:1,176:181:99:3482,393,0 chrXVI 87521 . G A 2949 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=18.20;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2982,330,0 chrXVI 87674 . C T 2888 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=17.83;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:2921,324,0 chrXVI 87677 . G A 2762 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=16.94;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2795,309,0 chrXVI 87803 . T C 3908.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.4263;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=21.59;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3908,435,0 chrXVI 87892 . A C 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=166;Dels=0.00;FS=6.712;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=0.157;QD=22.57;ReadPosRankSum=2.405;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:2,162:166:99:3746,423,0 chrXVI 87944 . A G 2829 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=24.39;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2862,324,0 chrXVI 88074 . C A 3945.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.02;FS=0.000;HaplotypeScore=205.8566;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.97;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:3945,429,0 chrXVI 88210 . A G 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=164;Dels=0.01;FS=3.203;HaplotypeScore=33.7989;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.290;QD=23.15;ReadPosRankSum=1.711;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3797,423,0 chrXVI 88281 . A G 3572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.9480;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.525;QD=22.90;ReadPosRankSum=1.710;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3572,399,0 chrXVI 88339 . A G 2685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.121;DP=136;Dels=0.00;FS=2.424;HaplotypeScore=9.7775;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.058;QD=19.74;ReadPosRankSum=3.367;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:4,132:136:99:2718,306,0 chrXVI 88438 . T C 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.406;QD=22.39;ReadPosRankSum=1.712;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3806,444,0 chrXVI 88567 . G A 2622 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=23.20;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2655,285,0 chrXVI 88582 . C T 2933 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=22.05;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2966,321,0 chrXVI 88600 . T C 2998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=139;Dels=0.00;FS=3.023;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-1.282;QD=21.57;ReadPosRankSum=2.414;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3031,333,0 chrXVI 88778 . C T 4547.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=24.71;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4547,495,0 chrXVI 88834 . A G 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.674;DP=155;Dels=0.00;FS=6.103;HaplotypeScore=18.5630;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.100;QD=21.31;ReadPosRankSum=2.874;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:3,148:155:99:3303,369,0 chrXVI 89075 . G T 3851.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=24.37;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3851,408,0 chrXVI 89089 . A G 3447.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=22.53;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3447,393,0 chrXVI 89101 . T G 3514.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=22.38;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3514,393,0 chrXVI 89283 . T C 3584.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.54;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3584,405,0 chrXVI 89305 . A G 3442.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=160;Dels=0.00;FS=7.676;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-2.187;QD=21.51;ReadPosRankSum=2.403;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3442,378,0 chrXVI 89899 . A G 2759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.585;QD=22.80;ReadPosRankSum=1.703;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,117:121:99:2792,318,0 chrXVI 90826 . G A 2278 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.33;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2311,252,0 chrXVI 91135 . T C 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=3.329;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.172;QD=21.95;ReadPosRankSum=1.662;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2206,249,0 chrXVI 91999 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=15.8147;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.275;QD=23.54;ReadPosRankSum=1.684;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:1,143:147:99:3460,393,0 chrXVI 92123 . G A 2685 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.41;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2718,291,0 chrXVI 93759 . G C 4226.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.36;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4226,477,0 chrXVI 93996 . A G 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.732;DP=139;Dels=0.00;FS=5.820;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;MQRankSum=0.631;QD=20.86;ReadPosRankSum=2.950;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2933,324,0 chrXVI 94369 . T C 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.2818;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.801;QD=21.96;ReadPosRankSum=1.703;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2646,300,0 chrXVI 94414 . C T 2501 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.05;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2534,276,0 chrXVI 94468 . T A 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=97;Dels=0.00;FS=6.157;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.282;QD=21.94;ReadPosRankSum=2.348;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2161,234,0 chrXVI 95158 . T C 3186 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.4426;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.12;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,140:144:99:3219,360,0 chrXVI 95198 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=137;Dels=0.00;FS=3.522;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.500;QD=23.47;ReadPosRankSum=1.706;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3249,372,0 chrXVI 95370 . C G 3503.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.16;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3503,387,0 chrXVI 95576 . C T 1889 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.10;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,90:94:99:1922,210,0 chrXVI 95690 . A G 2449 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.06;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2482,276,0 chrXVI 95705 . A G 2550 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.37;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2583,288,0 chrXVI 95750 . A G 3078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=132;Dels=0.00;FS=14.936;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=2.233;QD=23.32;ReadPosRankSum=2.915;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:3,127:132:99:3111,348,0 chrXVI 96115 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.7133;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.54;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3256,366,0 chrXVI 96152 . C T 2276 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=86.9133;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=21.47;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2309,246,0 chrXVI 96363 . A G 2391 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=20.26;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2424,273,0 chrXVI 96371 . C T 2514 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=19.95;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2547,279,0 chrXVI 96475 . T A 3461.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=19.02;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3461,372,0 chrXVI 96486 . G A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=17.62;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3331,366,0 chrXVI 96492 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=16.72;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3159,348,0 chrXVI 97117 . G A 4270.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.12;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4270,459,0 chrXVI 97252 . A G 3702.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=166;Dels=0.00;FS=2.985;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=1.591;QD=22.30;ReadPosRankSum=2.390;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3702,429,0 chrXVI 97280 . T G 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=163;Dels=0.00;FS=8.386;HaplotypeScore=7.0323;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.068;QD=21.17;ReadPosRankSum=2.389;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:2,160:163:99:3450,405,0 chrXVI 97369 . C T 3281.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=15.1204;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.64;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3281,357,0 chrXVI 97603 . G A 2456 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=16.16;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2489,288,0 chrXVI 97609 . A G 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=154;Dels=0.00;FS=3.277;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=1;MQRankSum=-0.172;QD=15.64;ReadPosRankSum=1.709;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:2442,285,0 chrXVI 97663 . T C 2089 filter AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.10;MQ0=14;QD=12.15;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:2122,249,0 chrXVI 97672 . T C 2087 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=174;Dels=0.00;FS=2.982;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=14;MQRankSum=-2.142;QD=11.99;ReadPosRankSum=2.419;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:2120,237,0 chrXVI 97696 . G A 2601 filter AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=14;QD=14.95;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2634,288,0 chrXVI 97714 . C T 2332 filter AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=13;QD=13.80;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:2365,261,0 chrXVI 97885 . G A 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.4260;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;MQRankSum=-1.505;QD=17.35;ReadPosRankSum=0.729;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,185:189:99:3280,366,0 chrXVI 97984 . T C 3938.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.9696;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=1;QD=20.95;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3938,432,0 chrXVI 98068 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=3.495;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.452;QD=20.68;ReadPosRankSum=1.711;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3350,381,0 chrXVI 98320 . T C 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=4.271;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.626;QD=22.13;ReadPosRankSum=1.706;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2932,327,0 chrXVI 98464 . C T 3113 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.95;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3146,333,0 chrXVI 98717 . G A 2254 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.54;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2287,249,0 chrXVI 98881 . G T 2104 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.2233;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.15;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2137,231,0 chrXVI 98933 . T C 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-1.732;QD=22.34;ReadPosRankSum=1.700;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2446,279,0 chrXVI 98969 . C A 2167 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.34;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2200,249,0 chrXVI 98992 . G A 1582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.241;QD=20.03;ReadPosRankSum=1.250;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1615,183,0 chrXVI 99017 . A G 127.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=58;Dels=0.00;FS=2.759;HaplotypeScore=23.8164;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=0.371;QD=2.19;ReadPosRankSum=2.253;SB=-4.921e+02 GT:AD:DP:GQ:PL 1/1:2,55:58:18:160,18,0 chrXVI 99260 . A C 2831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=126;Dels=0.00;FS=3.044;HaplotypeScore=8.1426;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.654;QD=22.47;ReadPosRankSum=2.313;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2864,321,0 chrXVI 100535 . G A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.84;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3312,375,0 chrXVI 100759 . A G 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.157;DP=145;Dels=0.00;FS=7.159;HaplotypeScore=16.3407;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.490;QD=20.94;ReadPosRankSum=2.398;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:3069,360,0 chrXVI 101696 . C T 2331 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=21.00;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2364,258,0 chrXVI 101698 . C T 2167 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=19.18;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2200,246,0 chrXVI 101890 . C T 2677 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=18.09;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2710,300,0 chrXVI 101892 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=17.33;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2667,288,0 chrXVI 101962 . T C 4433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.417;DP=203;Dels=0.00;FS=5.157;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.942;QD=21.84;ReadPosRankSum=3.399;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:4,197:203:99:4433,492,0 chrXVI 102244 . A C 4424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=205;Dels=0.00;FS=5.536;HaplotypeScore=11.2230;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.417;QD=21.58;ReadPosRankSum=2.936;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:3,202:205:99:4424,516,0 chrXVI 102331 . T C 3288.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.01;FS=0.000;HaplotypeScore=8.1678;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=18.47;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3288,372,0 chrXVI 102343 . G T 2914 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=18.92;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:2947,324,0 chrXVI 102370 . C T 2614 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=19.22;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2647,285,0 chrXVI 102751 . G T 3003 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.7678;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.76;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3036,339,0 chrXVI 102931 . A T 2596 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.60;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2629,297,0 chrXVI 103007 . A C 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=0.812;QD=19.51;ReadPosRankSum=1.705;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2530,297,0 chrXVI 103016 . A T 2170 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=17.36;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2203,249,0 chrXVI 103115 . C G 3034 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.2464;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.34;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3067,345,0 chrXVI 103182 . T A 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=142;Dels=0.00;FS=2.849;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-0.372;QD=20.51;ReadPosRankSum=2.346;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2946,318,0 chrXVI 103184 . G A 2853 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=20.67;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2886,312,0 chrXVI 103531 . T C 3912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=191;Dels=0.00;FS=10.062;HaplotypeScore=18.7423;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.144;QD=20.48;ReadPosRankSum=2.424;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:2,188:191:99:3912,441,0 chrXVI 103912 . C T 5080.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.31;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,206:209:99:5080,552,0 chrXVI 104754 . T C 1120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=55;Dels=0.00;FS=6.532;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.257;QD=20.36;ReadPosRankSum=1.668;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:1,53:55:99:1153,132,0 chrXVI 104784 . C T 1146 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1179,129,0 chrXVI 104905 . A T 465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=7.9427;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=1.476;QD=16.61;ReadPosRankSum=1.605;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:54:498,54,0 chrXVI 105285 . C T 4091.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.24;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4091,441,0 chrXVI 105527 . G A 2483 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.0926;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.67;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2516,273,0 chrXVI 105706 . C T 2746 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.3991;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.15;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2779,309,0 chrXVI 105817 . T A 3667.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.8566;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.51;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3667,396,0 chrXVI 105914 . C T 2973 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=23.05;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3006,327,0 chrXVI 105960 . T C 3069 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=162;Dels=0.00;FS=3.013;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;MQRankSum=2.359;QD=18.94;ReadPosRankSum=2.389;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3102,351,0 chrXVI 105966 . T C 2887 SnpCluster AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=18.16;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2920,330,0 chrXVI 105969 . A T 2880 SnpCluster AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=17.78;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2913,315,0 chrXVI 106274 . C T 4326.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.03;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,176:180:99:4326,471,0 chrXVI 106351 . T C 5120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.889;DP=230;Dels=0.00;FS=14.650;HaplotypeScore=12.1680;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.769;QD=22.26;ReadPosRankSum=4.013;SB=-2.612e+03 GT:AD:DP:GQ:PL 1/1:6,224:230:99:5120,582,0 chrXVI 106600 . G A 7107.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=19.1613;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.46;SB=-3.117e+03 GT:AD:DP:GQ:PL 1/1:0,303:303:99:7107,798,0 chrXVI 106669 . C T 5946.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=11.6252;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.50;SB=-2.907e+03 GT:AD:DP:GQ:PL 1/1:0,252:253:99:5946,648,0 chrXVI 107538 . G A 2986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.260;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=16.6558;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.086;QD=13.45;ReadPosRankSum=-1.433;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:1,221:222:99:3019,310,0 chrXVI 107676 . C T 3514.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3514,393,0 chrXVI 107814 . T A 4423.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=10.5492;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4423,483,0 chrXVI 108114 . C T 3091 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.01;FS=0.000;HaplotypeScore=17.4379;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=17.66;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3124,348,0 chrXVI 108350 . T C 2554 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=22.21;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2587,294,0 chrXVI 108924 . C T 4521.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.84;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4521,495,0 chrXVI 108998 . G A 3566.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.5980;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.03;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3566,387,0 chrXVI 109416 . A G 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=4.556;HaplotypeScore=8.1655;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.125;QD=22.75;ReadPosRankSum=1.634;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,176:178:99:4049,450,0 chrXVI 113103 . G A 5809.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=29.7375;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.00;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:0,239:242:99:5809,630,0 chrXVI 113385 . G A 6079.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=18.9636;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.11;SB=-3.423e+03 GT:AD:DP:GQ:PL 1/1:0,274:275:99:6079,652,0 chrXVI 113685 . T C 5013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=230;Dels=0.00;FS=3.247;HaplotypeScore=11.9853;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.123;QD=21.80;ReadPosRankSum=1.701;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:1,226:230:99:5013,585,0 chrXVI 113880 . T C 5064.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=220;Dels=0.00;FS=3.010;HaplotypeScore=13.0737;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.795;QD=23.02;ReadPosRankSum=1.684;SB=-2.708e+03 GT:AD:DP:GQ:PL 1/1:1,217:220:99:5064,570,0 chrXVI 114138 . C T 4767.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=13.1057;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.81;SB=-2.577e+03 GT:AD:DP:GQ:PL 1/1:0,207:209:99:4767,534,0 chrXVI 114171 . A G 3829.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.51;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3829,444,0 chrXVI 114192 . A G 3394.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.82;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3394,396,0 chrXVI 114231 . A G 3426.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.9105;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.15;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3426,387,0 chrXVI 114276 . C T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.20;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3647,390,0 chrXVI 114405 . G T 3186 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.5538;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=20.29;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3219,351,0 chrXVI 114414 . C T 3090 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=19.07;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,157:160:99:3123,339,0 chrXVI 114438 . C T 3478.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.46;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3478,375,0 chrXVI 115084 . A T 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=128;Dels=0.00;FS=8.762;HaplotypeScore=7.3814;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.067;QD=23.36;ReadPosRankSum=2.411;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3023,330,0 chrXVI 115170 . G T 2691 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=24.69;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2724,300,0 chrXVI 115392 . A G 4077.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4077,485,0 chrXVI 116203 . C A 2507 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.55;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2540,276,0 chrXVI 116228 . T A 2475 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=12.31;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:2508,288,0 chrXVI 116396 . A G 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=139;Dels=0.00;FS=2.732;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.027;QD=21.16;ReadPosRankSum=2.378;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:2,135:139:99:2974,336,0 chrXVI 116499 . T C 2615 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.96;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2648,306,0 chrXVI 117111 . C T 3543.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.3416;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.78;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3543,381,0 chrXVI 117982 . A G 4388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=182;Dels=0.00;FS=4.677;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-1.161;QD=24.11;ReadPosRankSum=1.713;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4388,492,0 chrXVI 118097 . C G 3710.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.62;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3710,414,0 chrXVI 118152 . T C 3575.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=164;Dels=0.00;FS=4.718;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.180;QD=21.80;ReadPosRankSum=1.690;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3575,402,0 chrXVI 118252 . T C 3621.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=4.285;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=0.236;QD=21.43;ReadPosRankSum=1.691;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3621,408,0 chrXVI 118260 . T C 3528.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.51;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3528,414,0 chrXVI 119014 . G A 2742 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2775,300,0 chrXVI 119106 . G A 3138 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3171,342,0 chrXVI 119500 . C T 4198.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.2230;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.58;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4198,447,0 chrXVI 119623 . A G 2326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.072;QD=21.94;ReadPosRankSum=1.699;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2359,264,0 chrXVI 119669 . C T 3066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.205;DP=139;Dels=0.00;FS=3.405;HaplotypeScore=9.5237;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.682;QD=22.06;ReadPosRankSum=0.778;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3099,336,0 chrXVI 120397 . G A 3882.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3020;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.88;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3882,423,0 chrXVI 120598 . A G 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.047;QD=19.65;ReadPosRankSum=1.661;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2922,342,0 chrXVI 120748 . T C 3851.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.06;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3851,432,0 chrXVI 121018 . A G 4154.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.3829;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.33;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4154,480,0 chrXVI 121081 . C T 3751.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.6259;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.06;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3751,420,0 chrXVI 121187 . A G 4819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=223;Dels=0.00;FS=3.150;HaplotypeScore=15.7624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.466;QD=21.61;ReadPosRankSum=1.685;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:1,220:223:99:4819,546,0 chrXVI 121390 . C G 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=172;Dels=0.00;FS=5.062;HaplotypeScore=5.7639;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.754;QD=19.83;ReadPosRankSum=0.693;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,169:172:99:3411,384,0 chrXVI 121512 . T C 1990 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2023,234,0 chrXVI 122198 . T C 3427.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=156;Dels=0.00;FS=7.121;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.552;QD=21.97;ReadPosRankSum=2.387;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3427,381,0 chrXVI 122768 . G A 3975.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.84;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3975,444,0 chrXVI 122927 . T C 4261.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.41;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4261,474,0 chrXVI 123092 . G A 4735.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=9.6252;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.56;SB=-2.487e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4735,513,0 chrXVI 123192 . T G 3755.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=4.155;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.232;QD=22.76;ReadPosRankSum=1.669;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3755,429,0 chrXVI 123263 . G A 4007.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8456;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4007,435,0 chrXVI 123371 . T C 2454 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=18.59;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2487,288,0 chrXVI 123374 . T C 2465 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=18.67;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2498,294,0 chrXVI 123389 . A G 2454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=133;Dels=0.00;FS=6.468;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=-0.577;QD=18.45;ReadPosRankSum=2.412;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:2,128:133:99:2487,279,0 chrXVI 123818 . T C 4235.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.209;DP=209;Dels=0.00;FS=13.580;HaplotypeScore=21.0755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.063;QD=20.26;ReadPosRankSum=3.410;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:4,204:209:99:4235,489,0 chrXVI 125593 . G A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.95;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3665,390,0 chrXVI 125654 . G A 2874 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.8590;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.61;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2907,324,0 chrXVI 126095 . T C 3518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=168;Dels=0.00;FS=3.940;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.397;QD=20.94;ReadPosRankSum=1.649;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,165:168:99:3518,393,0 chrXVI 126762 . C T 3041 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.76;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3074,330,0 chrXVI 126838 . A G 4938.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.8084;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.14;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4938,584,0 chrXVI 127901 . C T 6637.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=20.6061;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.29;SB=-3.803e+03 GT:AD:DP:GQ:PL 1/1:0,283:285:99:6637,721,0 chrXVI 127985 . C T 4766.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=29.5592;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.48;SB=-2.306e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4766,516,0 chrXVI 128425 . A C 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=147;Dels=0.00;FS=2.752;HaplotypeScore=11.0969;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.311;QD=21.61;ReadPosRankSum=2.399;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3209,360,0 chrXVI 128456 . T C 3637.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3637,414,0 chrXVI 128607 . G A 3812.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.53;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3812,420,0 chrXVI 128654 . C T 4631.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.59;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4631,501,0 chrXVI 129028 . A G 6460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=331;Dels=0.00;FS=5.618;HaplotypeScore=20.2180;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.097;QD=19.52;ReadPosRankSum=2.796;SB=-3.425e+03 GT:AD:DP:GQ:PL 1/1:3,327:331:99:6460,726,0 chrXVI 129189 . C G 5737.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=22.41;SB=-2.505e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5737,645,0 chrXVI 129207 . A G 5489.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=22.22;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:5489,609,0 chrXVI 129227 . C T 5001.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=8.9565;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.01;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,234:238:99:5001,546,0 chrXVI 129263 . C T 5021.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.02;SB=-2.754e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:5021,544,0 chrXVI 129343 . A T 4958.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=227;Dels=0.00;FS=11.314;HaplotypeScore=8.8470;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.192;QD=21.84;ReadPosRankSum=2.924;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:3,224:227:99:4958,558,0 chrXVI 129604 . T C 5536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=254;Dels=0.00;FS=6.065;HaplotypeScore=10.0334;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.506;QD=21.80;ReadPosRankSum=2.941;SB=-2.998e+03 GT:AD:DP:GQ:PL 1/1:3,251:254:99:5536,627,0 chrXVI 129670 . C T 4302.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=19.73;SB=-2.483e+03 GT:AD:DP:GQ:PL 1/1:0,216:218:99:4302,465,0 chrXVI 129671 . C T 4297.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=19.80;SB=-2.475e+03 GT:AD:DP:GQ:PL 1/1:0,212:217:99:4297,468,0 chrXVI 129787 . T C 5086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=243;Dels=0.00;FS=3.486;HaplotypeScore=15.0055;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.424;QD=20.93;ReadPosRankSum=1.703;SB=-2.656e+03 GT:AD:DP:GQ:PL 1/1:1,240:243:99:5086,582,0 chrXVI 130137 . A G 5115.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.500;DP=238;Dels=0.00;FS=2.840;HaplotypeScore=12.1991;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.779;QD=21.49;ReadPosRankSum=1.996;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:2,236:238:99:5115,573,0 chrXVI 130145 . G T 4309.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=20.42;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4309,477,0 chrXVI 130210 . T C 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.0470;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=1.162;QD=19.61;ReadPosRankSum=1.691;SB=-2.087e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3373,381,0 chrXVI 130644 . G A 5264.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.93;SB=-2.978e+03 GT:AD:DP:GQ:PL 1/1:0,236:240:99:5264,570,0 chrXVI 130647 . A G 4733.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=19.32;SB=-2.681e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:4733,555,0 chrXVI 130722 . C T 5305.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.406;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=17.9491;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.121;QD=21.57;ReadPosRankSum=1.148;SB=-2.885e+03 GT:AD:DP:GQ:PL 1/1:1,244:246:99:5305,565,0 chrXVI 130793 . A C 5488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.397;DP=246;Dels=0.00;FS=8.507;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.758;QD=22.31;ReadPosRankSum=3.233;SB=-2.685e+03 GT:AD:DP:GQ:PL 1/1:4,241:246:99:5488,624,0 chrXVI 131014 . C G 4740.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.15;SB=-2.544e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4740,528,0 chrXVI 131043 . T C 3970.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=204;Dels=0.00;FS=5.446;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.896;QD=19.46;ReadPosRankSum=2.945;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:3,199:204:99:3970,456,0 chrXVI 131052 . C T 3955.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.78;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:3955,429,0 chrXVI 131325 . G A 4989.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.5474;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.53;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4989,540,0 chrXVI 131623 . G A 3367.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3367,369,0 chrXVI 131754 . T C 3792.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=174;Dels=0.00;FS=2.571;HaplotypeScore=11.8262;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.647;QD=21.79;ReadPosRankSum=2.960;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:3,171:174:99:3792,441,0 chrXVI 132284 . C T 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.567;DP=22;Dels=0.00;FS=19.382;HaplotypeScore=14.3056;MLEAC=1;MLEAF=0.500;MQ=56.78;MQ0=0;MQRankSum=-0.313;QD=0.52;ReadPosRankSum=0.045;SB=0.028 GT:AD:DP:GQ:PL 0/1:17,4:22:41:41,0,239 chrXVI 132377 . A G 733 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:90:766,90,0 chrXVI 132473 . G A 105.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.150;DP=83;Dels=0.00;FS=13.290;HaplotypeScore=17.6744;MLEAC=1;MLEAF=0.500;MQ=52.56;MQ0=0;MQRankSum=-1.065;QD=1.27;ReadPosRankSum=-5.721;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,21:83:99:135,0,624 chrXVI 132502 . G A 1686 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.48;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1719,189,0 chrXVI 132681 . G T 2539 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=19.38;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2572,279,0 chrXVI 132693 . C T 2620 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=18.99;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2653,291,0 chrXVI 132838 . A C 2201 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1744;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.76;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2234,249,0 chrXVI 132855 . T C 2061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=1.087;QD=20.21;ReadPosRankSum=1.698;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2094,234,0 chrXVI 132909 . A G 1895 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=16.77;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1928,225,0 chrXVI 132915 . A G 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=111;Dels=0.00;FS=3.050;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=-0.531;QD=17.22;ReadPosRankSum=2.405;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:2,107:111:99:1944,216,0 chrXVI 133186 . G A 7074.01 PASS AC=2;AF=1.00;AN=2;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=24.8007;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.60;SB=-3.399e+03 GT:AD:DP:GQ:PL 1/1:0,310:313:99:7074,766,0 chrXVI 133253 . T C 8388.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.633;DP=420;Dels=0.00;FS=3.781;HaplotypeScore=19.7523;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.588;QD=19.97;ReadPosRankSum=-1.442;SB=-4.457e+03 GT:AD:DP:GQ:PL 1/1:1,417:420:99:8388,953,0 chrXVI 133289 . A G 7052.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.439;DP=381;Dels=0.00;FS=9.963;HaplotypeScore=19.7712;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=-0.417;QD=18.51;ReadPosRankSum=4.477;SB=-3.442e+03 GT:AD:DP:GQ:PL 1/1:7,374:381:99:7052,798,0 chrXVI 133303 . C A 6321.01 PASS AC=2;AF=1.00;AN=2;DP=331;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=19.10;SB=-2.852e+03 GT:AD:DP:GQ:PL 1/1:0,330:331:99:6321,685,0 chrXVI 133307 . G A 5847.01 PASS AC=2;AF=1.00;AN=2;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.99;SB=-2.710e+03 GT:AD:DP:GQ:PL 1/1:0,325:325:99:5847,639,0 chrXVI 133367 . G A 5087.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=8.8589;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=18.10;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:5087,567,0 chrXVI 133388 . C A 5581.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=10.6018;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=19.05;SB=-2.260e+03 GT:AD:DP:GQ:PL 1/1:0,291:293:99:5581,609,0 chrXVI 133624 . T C 4409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=19.6076;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-0.472;QD=21.10;ReadPosRankSum=1.649;SB=-2.609e+03 GT:AD:DP:GQ:PL 1/1:1,208:209:99:4409,498,0 chrXVI 134038 . T C 3668.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.96;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3668,411,0 chrXVI 134176 . T C 4204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=180;Dels=0.00;FS=3.000;HaplotypeScore=8.6979;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.935;QD=23.36;ReadPosRankSum=2.395;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:4204,483,0 chrXVI 134206 . T C 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.009;QD=21.93;ReadPosRankSum=1.679;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4277,486,0 chrXVI 134476 . T C 4075.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.575;DP=208;Dels=0.00;FS=9.084;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;MQRankSum=0.072;QD=19.59;ReadPosRankSum=1.934;SB=-2.338e+03 GT:AD:DP:GQ:PL 1/1:4,203:208:99:4075,474,0 chrXVI 134479 . C T 4145.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.9810;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=20.02;SB=-2.470e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4145,456,0 chrXVI 134497 . A T 4317.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=20.27;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:4317,468,0 chrXVI 134518 . T C 3951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=218;Dels=0.00;FS=3.029;HaplotypeScore=9.1703;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-0.995;QD=18.12;ReadPosRankSum=2.381;SB=-2.615e+03 GT:AD:DP:GQ:PL 1/1:2,214:218:99:3951,450,0 chrXVI 134554 . C T 3729.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.63;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3729,414,0 chrXVI 135543 . A G 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=113;Dels=0.00;FS=4.157;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.217;QD=22.79;ReadPosRankSum=1.701;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2608,288,0 chrXVI 135606 . G A 3500.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=25.18;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3500,381,0 chrXVI 135730 . C T 3380.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=23.15;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3380,369,0 chrXVI 135960 . T C 2020 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=102;Dels=0.00;FS=52.348;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;MQRankSum=2.931;QD=19.80;ReadPosRankSum=2.872;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,99:102:99:2053,225,0 chrXVI 136074 . G A 787 filter AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=14.74;MQ0=131;QD=4.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:71,100:171:90:820,90,0 chrXVI 136128 . T C 66.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.922;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=27.59;MQ0=2;MQRankSum=0.198;QD=7.39;ReadPosRankSum=1.495;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,7:9:12:99,12,0 chrXVI 136612 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.06;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:3150,357,0 chrXVI 136628 . T C 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-0.554;QD=22.38;ReadPosRankSum=1.709;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,149:151:99:3380,390,0 chrXVI 136678 . C A 2717 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.6347;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.06;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2750,312,0 chrXVI 136706 . T G 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.659;DP=140;Dels=0.00;FS=11.242;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.345;QD=20.93;ReadPosRankSum=3.580;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:5,134:140:99:2963,342,0 chrXVI 136917 . C T 3353.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.70;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3353,378,0 chrXVI 137217 . A T 4312.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.56;SB=-2.218e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4312,471,0 chrXVI 137220 . A G 3836.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.19;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:3836,447,0 chrXVI 137229 . T C 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-1.055;QD=19.38;ReadPosRankSum=1.674;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3469,402,0 chrXVI 137386 . A G 4490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=217;Dels=0.00;FS=2.526;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.074;QD=20.69;ReadPosRankSum=2.940;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:3,213:217:99:4490,522,0 chrXVI 137442 . T C 3805.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=23.20;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3805,438,0 chrXVI 137502 . G A 3224.03 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.3185;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.19;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3257,354,0 chrXVI 137748 . T C 3327.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:3327,375,0 chrXVI 137892 . C T 4292.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.53;SB=-2.051e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4292,465,0 chrXVI 138102 . G A 2597 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8227;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.98;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2630,291,0 chrXVI 139546 . C A 788 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;MQRankSum=-1.299;QD=19.70;ReadPosRankSum=1.646;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:99:821,105,0 chrXVI 139547 . T A 767 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;MQRankSum=-1.646;QD=19.17;ReadPosRankSum=1.646;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:99:800,105,0 chrXVI 139548 . A G 764 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;MQRankSum=-0.520;QD=19.10;ReadPosRankSum=1.646;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:99:797,105,0 chrXVI 139660 . C T 1931 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.20;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1964,213,0 chrXVI 139685 . G T 2454 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.83;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2487,273,0 chrXVI 139893 . T A 3729.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=18.3028;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=20.95;SB=-2.006e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3729,405,0 chrXVI 140165 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.40;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3012,324,0 chrXVI 140178 . A G 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=121;Dels=0.00;FS=2.979;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.335;QD=19.86;ReadPosRankSum=2.409;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2436,282,0 chrXVI 140372 . A G 2685 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.01;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2718,306,0 chrXVI 140415 . A G 2790 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.97;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2823,333,0 chrXVI 140685 . C T 2847 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.90;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2880,318,0 chrXVI 141211 . C T 3787.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=13.3602;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=20.04;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3787,405,0 chrXVI 141213 . T G 3543.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.1420;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.45;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:3543,408,0 chrXVI 141255 . G A 3963.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=18.7253;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=19.91;SB=-2.448e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:3963,450,0 chrXVI 141372 . G T 4133.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.5123;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=23.35;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4133,441,0 chrXVI 141458 . C T 3813.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=21.91;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3813,417,0 chrXVI 141645 . G C 2777 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=18.39;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2810,327,0 chrXVI 141646 . G A 2985 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=19.64;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3018,330,0 chrXVI 141675 . G A 2950 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=17.15;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:2983,330,0 chrXVI 141900 . C T 3099 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=17.91;SB=-2.068e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3132,339,0 chrXVI 141903 . A C 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=3.257;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=-0.542;QD=17.63;ReadPosRankSum=1.711;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:2907,333,0 chrXVI 142077 . C T 4139.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.25;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4139,465,0 chrXVI 142384 . A T 3365.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3365,369,0 chrXVI 142584 . C T 3068 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3101,339,0 chrXVI 143261 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.13;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3266,351,0 chrXVI 143293 . C T 2579 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.4334;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.84;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2612,288,0 chrXVI 143341 . C G 1709 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=15.82;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1742,201,0 chrXVI 143342 . T A 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=0.334;QD=16.75;ReadPosRankSum=1.700;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1859,204,0 chrXVI 143363 . T C 1904 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=18.31;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1937,219,0 chrXVI 143447 . A T 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=135;Dels=0.00;FS=8.339;HaplotypeScore=12.9656;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;MQRankSum=-0.938;QD=25.08;ReadPosRankSum=2.359;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3386,369,0 chrXVI 143563 . A C 3527.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=152;Dels=0.01;FS=6.662;HaplotypeScore=18.2597;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-1.503;QD=23.20;ReadPosRankSum=2.416;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:2,146:151:99:3527,405,0 chrXVI 143626 . A C 3906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.255;QD=23.25;ReadPosRankSum=1.691;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3906,435,0 chrXVI 143745 . A G 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.627;DP=135;Dels=0.00;FS=11.268;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.869;QD=21.80;ReadPosRankSum=3.604;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:5,129:135:99:2976,348,0 chrXVI 143773 . T C 2722 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.43;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2755,306,0 chrXVI 143841 . G A 2944 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=20.30;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2977,324,0 chrXVI 143864 . G A 2989 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=19.79;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3022,327,0 chrXVI 143869 . T G 2542 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=3.862;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=-1.732;QD=17.41;ReadPosRankSum=1.685;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2575,294,0 chrXVI 143870 . C T 2660 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=18.34;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2693,294,0 chrXVI 143935 . G A 1912 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=16.07;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1945,213,0 chrXVI 143952 . G A 1842 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=16.16;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:1875,201,0 chrXVI 143955 . A G 1772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.487;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=-0.169;QD=15.68;ReadPosRankSum=1.701;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1805,207,0 chrXVI 144102 . C T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=26.14;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3764,408,0 chrXVI 144148 . G A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=24.23;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3683,402,0 chrXVI 144259 . T C 4198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=189;Dels=0.00;FS=3.574;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.256;QD=22.21;ReadPosRankSum=1.714;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4198,474,0 chrXVI 144415 . C T 2722 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8907;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.60;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2755,297,0 chrXVI 144429 . G A 2837 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.9758;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=21.49;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2870,315,0 chrXVI 144486 . T C 3856.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;MQRankSum=0.478;QD=23.51;ReadPosRankSum=1.711;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3856,432,0 chrXVI 144595 . G A 4238.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=17.7790;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.94;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4238,468,0 chrXVI 144737 . T C 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=3.628;HaplotypeScore=4.3421;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;MQRankSum=-1.273;QD=14.36;ReadPosRankSum=1.377;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:2431,279,0 chrXVI 145101 . T C 3020 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.4293;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.73;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3053,348,0 chrXVI 145109 . A G 3014 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.3227;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.84;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3047,351,0 chrXVI 145227 . A G 3573.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=152;Dels=0.00;FS=3.339;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.149;QD=23.51;ReadPosRankSum=1.709;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3573,399,0 chrXVI 145251 . A G 3320.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.198;DP=154;Dels=0.00;FS=12.919;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-1.357;QD=21.56;ReadPosRankSum=3.345;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:4,150:154:99:3320,369,0 chrXVI 145329 . A G 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=3.150;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.907;QD=23.17;ReadPosRankSum=1.650;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2975,339,0 chrXVI 145358 . A T 2754 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=20.55;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2787,306,0 chrXVI 145367 . T G 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.187;QD=20.75;ReadPosRankSum=1.679;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2772,303,0 chrXVI 145411 . A T 3485.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.12;SB=-2.134e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3485,381,0 chrXVI 145599 . C G 2835 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.54;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2868,330,0 chrXVI 145612 . C G 2664 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.34;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2697,303,0 chrXVI 145717 . G C 2637 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.44;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2670,306,0 chrXVI 145885 . A G 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=173;Dels=0.00;FS=4.406;HaplotypeScore=11.2860;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.436;QD=22.03;ReadPosRankSum=1.611;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,170:173:99:3811,444,0 chrXVI 145943 . T C 4428.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=184;Dels=0.00;FS=2.953;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.154;QD=24.07;ReadPosRankSum=2.396;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:4428,495,0 chrXVI 146064 . C T 3873.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.19;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3873,429,0 chrXVI 146345 . T C 2333 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.43;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2366,267,0 chrXVI 146388 . C T 2670 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=16.2685;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.19;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2703,288,0 chrXVI 146460 . C T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.01;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3289,357,0 chrXVI 146533 . A G 2826 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.57;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2859,318,0 chrXVI 146758 . T G 2845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=3.155;HaplotypeScore=7.1678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.647;QD=23.13;ReadPosRankSum=1.704;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2878,330,0 chrXVI 146933 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.91;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3512,387,0 chrXVI 146964 . G A 2855 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.48;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2888,315,0 chrXVI 147195 . T C 2368 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.94;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2401,270,0 chrXVI 147209 . C T 2304 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=16.46;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2337,261,0 chrXVI 147215 . T C 2420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.477;QD=16.24;ReadPosRankSum=1.709;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:2453,270,0 chrXVI 147254 . T C 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=0.872;QD=17.34;ReadPosRankSum=1.708;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2547,291,0 chrXVI 147305 . C T 2910 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4921;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2943,318,0 chrXVI 147862 . A G 2814 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.14;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2847,324,0 chrXVI 147934 . C T 3804.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3804,420,0 chrXVI 149187 . G T 5380.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=26.7057;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.35;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,250:252:99:5380,603,0 chrXVI 149427 . T G 5077.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.751;DP=230;Dels=0.00;FS=6.029;HaplotypeScore=18.0986;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.109;QD=22.07;ReadPosRankSum=2.943;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:3,227:230:99:5077,564,0 chrXVI 149499 . A T 4615.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=9.1691;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4615,510,0 chrXVI 149586 . C T 3914.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.07;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:3914,423,0 chrXVI 150165 . A G 2757 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.23;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2790,318,0 chrXVI 150219 . C A 2825 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.15;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2858,306,0 chrXVI 150295 . C T 2944 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.37;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2977,327,0 chrXVI 150500 . T C 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=108;Dels=0.00;FS=2.965;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.932;QD=23.20;ReadPosRankSum=2.358;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2539,285,0 chrXVI 150800 . G A 5405.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.52;SB=-2.838e+03 GT:AD:DP:GQ:PL 1/1:0,239:240:99:5405,615,0 chrXVI 151045 . A G 5013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.327;DP=223;Dels=0.00;FS=9.013;HaplotypeScore=23.4813;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.515;QD=22.48;ReadPosRankSum=3.405;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:4,218:223:99:5013,576,0 chrXVI 151173 . G A 3311.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.22;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3311,360,0 chrXVI 151337 . G A 2744 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.87;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2777,303,0 chrXVI 151370 . A G 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.793;DP=117;Dels=0.00;FS=9.230;HaplotypeScore=15.7354;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.885;QD=20.33;ReadPosRankSum=2.958;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:4,112:117:99:2412,254,0 chrXVI 151434 . C T 2694 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.72;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2727,297,0 chrXVI 151479 . G A 2970 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.17;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3003,324,0 chrXVI 151534 . G T 3616.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=25.65;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3616,396,0 chrXVI 151590 . A C 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=3.947;HaplotypeScore=3.1136;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.750;QD=21.04;ReadPosRankSum=1.655;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2853,321,0 chrXVI 151591 . G T 2825 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3249;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.90;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2858,306,0 chrXVI 151839 . C T 3554.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.08;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3554,384,0 chrXVI 152376 . G T 2790 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.5509;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.30;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2823,309,0 chrXVI 152392 . A G 2626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=1.263;QD=19.74;ReadPosRankSum=1.706;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2659,300,0 chrXVI 152472 . A G 2917 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2950,333,0 chrXVI 153125 . C T 2564 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.88;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2597,291,0 chrXVI 153282 . A G 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=133;Dels=0.00;FS=5.798;HaplotypeScore=12.7814;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.568;QD=22.19;ReadPosRankSum=1.265;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2984,320,0 chrXVI 153638 . C G 3293.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.81;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3293,387,0 chrXVI 153797 . T C 4733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=208;Dels=0.00;FS=2.839;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.561;QD=22.75;ReadPosRankSum=2.391;SB=-2.102e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:4733,537,0 chrXVI 154077 . A C 3039 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.48;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3072,345,0 chrXVI 154089 . C T 3042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=4.269;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=1.084;QD=19.50;ReadPosRankSum=0.034;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3075,336,0 chrXVI 154194 . A G 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.213;QD=22.35;ReadPosRankSum=1.702;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2603,294,0 chrXVI 154283 . A C 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.958;DP=116;Dels=0.00;FS=15.454;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=1.303;QD=22.87;ReadPosRankSum=4.108;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:6,110:116:99:2686,297,0 chrXVI 154470 . A T 1907 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.67;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1940,213,0 chrXVI 155088 . T G 3558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.2129;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.087;QD=22.24;ReadPosRankSum=1.710;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3558,411,0 chrXVI 155669 . G C 2486 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.72;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2519,291,0 chrXVI 155901 . T C 3387.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.6008;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.668;QD=22.14;ReadPosRankSum=1.709;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3387,393,0 chrXVI 155948 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.622;QD=21.31;ReadPosRankSum=1.688;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,156:159:99:3389,381,0 chrXVI 156036 . C T 3180 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=18.2976;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=22.08;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3213,348,0 chrXVI 156134 . G C 3218.91 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.33;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3252,360,0 chrXVI 156304 . T A 2388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.703;DP=139;Dels=0.00;FS=11.521;HaplotypeScore=128.8915;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=-0.196;QD=17.18;ReadPosRankSum=1.457;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:2421,282,0 chrXVI 156309 . C T 1436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=126;Dels=0.02;FS=3.704;HaplotypeScore=126.4707;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=1.079;QD=11.40;ReadPosRankSum=0.852;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:1469,194,0 chrXVI 156745 . A G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.774;QD=20.21;ReadPosRankSum=1.658;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2903,339,0 chrXVI 156772 . C T 2777 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.57;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2810,300,0 chrXVI 156922 . A G 2966 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.13;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2999,330,0 chrXVI 157382 . C T 2859 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.43;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2892,312,0 chrXVI 157696 . G A 3961.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=22.25;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3961,426,0 chrXVI 157700 . G A 3837.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.44;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3837,417,0 chrXVI 158042 . T C 3104 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.71;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,136:143:99:3137,363,0 chrXVI 158238 . A T 2868 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.23;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2901,315,0 chrXVI 158555 . A G 3450.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=3.730;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.024;QD=23.96;ReadPosRankSum=1.684;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3450,390,0 chrXVI 158770 . C A 3713.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3713,402,0 chrXVI 159666 . A G 4013.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=184;Dels=0.00;FS=6.045;HaplotypeScore=14.9844;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-2.369;QD=21.81;ReadPosRankSum=0.560;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:2,180:184:99:4013,471,0 chrXVI 159720 . G A 3373.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=16.9906;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3373,387,0 chrXVI 160357 . G A 2401 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.65;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2434,264,0 chrXVI 160376 . G A 2405 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.69;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2438,261,0 chrXVI 160596 . T C 2501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=108;Dels=0.00;FS=2.838;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-1.857;QD=23.16;ReadPosRankSum=2.404;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2534,288,0 chrXVI 161120 . T C 4940.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.304;DP=213;Dels=0.00;FS=9.134;HaplotypeScore=11.7263;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.440;QD=23.19;ReadPosRankSum=3.394;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:4,208:213:99:4940,576,0 chrXVI 161210 . T C 5089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=241;Dels=0.00;FS=11.298;HaplotypeScore=17.2049;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=1.029;QD=21.12;ReadPosRankSum=2.954;SB=-2.341e+03 GT:AD:DP:GQ:PL 1/1:3,236:241:99:5089,588,0 chrXVI 161456 . C T 3700.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.7131;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=22.42;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3700,396,0 chrXVI 161462 . C T 3489.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.5043;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;QD=20.17;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3489,393,0 chrXVI 161489 . C T 3183 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=18.40;SB=-2.062e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3216,351,0 chrXVI 161510 . T C 2907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=199;Dels=0.00;FS=7.016;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;MQRankSum=-1.018;QD=14.61;ReadPosRankSum=2.351;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:2940,345,0 chrXVI 161519 . G A 3040 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=15.92;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3073,336,0 chrXVI 161768 . A G 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=0.929;QD=22.77;ReadPosRankSum=1.709;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3461,396,0 chrXVI 161856 . G A 4670.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=23.35;SB=-2.410e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4670,510,0 chrXVI 161895 . G A 4281.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.0209;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=19.73;SB=-2.732e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4281,462,0 chrXVI 161906 . A G 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=204;Dels=0.00;FS=3.053;HaplotypeScore=5.2133;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.594;QD=18.31;ReadPosRankSum=1.681;SB=-2.594e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:3735,414,0 chrXVI 161921 . G A 3341.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.2376;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=17.58;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3341,363,0 chrXVI 161945 . T C 2359 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.5032;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=14.13;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:2392,285,0 chrXVI 161957 . G A 2375 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=14.57;SB=-1.973e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:2408,270,0 chrXVI 161996 . A T 3670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=180;Dels=0.00;FS=9.551;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.771;QD=20.39;ReadPosRankSum=2.961;SB=-2.304e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:3670,399,0 chrXVI 162203 . A G 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.866;QD=21.56;ReadPosRankSum=1.700;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2361,270,0 chrXVI 162442 . T G 457 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;QD=10.39;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:54:490,54,0 chrXVI 162451 . A G 387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=5.921;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.80;MQ0=0;MQRankSum=-1.652;QD=9.00;ReadPosRankSum=1.652;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:48:420,48,0 chrXVI 162487 . G A 533 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=11.84;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:63:566,63,0 chrXVI 162525 . G A 867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=1.356;QD=18.45;ReadPosRankSum=0.829;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:1,45:47:99:900,99,0 chrXVI 162596 . A G 1235 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=57.7920;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=19.60;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1268,141,0 chrXVI 162746 . T C 2876 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.38;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2909,327,0 chrXVI 162788 . A G 2759 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.9236;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=21.22;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2792,315,0 chrXVI 162815 . A G 3089 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=21.16;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3122,366,0 chrXVI 162884 . A T 4306.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=10.5059;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=22.20;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4306,468,0 chrXVI 163022 . G A 3340.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.0705;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=21.55;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3340,366,0 chrXVI 163025 . G A 3095 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.1949;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.36;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3128,348,0 chrXVI 163124 . G A 2959 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=17.72;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:2992,339,0 chrXVI 163127 . A G 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.721;DP=162;Dels=0.00;FS=2.184;HaplotypeScore=5.5519;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-0.783;QD=18.01;ReadPosRankSum=2.683;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:3,159:162:99:2951,339,0 chrXVI 163169 . C T 3346.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.57;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3346,375,0 chrXVI 163239 . A G 4674.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.8040;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.02;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4674,528,0 chrXVI 163301 . T A 5883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=248;Dels=0.00;FS=2.573;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.649;QD=23.72;ReadPosRankSum=2.930;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:3,245:248:99:5883,634,0 chrXVI 163406 . G T 5344.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=4.1100;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=23.13;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5344,579,0 chrXVI 163412 . C A 4689.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=6.9614;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=19.87;SB=-2.568e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:4689,537,0 chrXVI 163478 . G A 4787.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=16.3840;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=19.38;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:4787,528,0 chrXVI 163627 . C A 4078.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.5923;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.92;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4078,453,0 chrXVI 163732 . T C 3334.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.33;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3334,375,0 chrXVI 163733 . G T 3468.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.89;SB=-2.104e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3468,378,0 chrXVI 163777 . C A 2793 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.7370;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=19.67;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2826,306,0 chrXVI 163861 . G A 2836 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.6636;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2869,315,0 chrXVI 164063 . G A 2654 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.88;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2687,291,0 chrXVI 164740 . A G 4405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.709;DP=206;Dels=0.00;FS=9.894;HaplotypeScore=19.0449;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.877;QD=21.38;ReadPosRankSum=2.877;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:3,201:206:99:4405,501,0 chrXVI 164845 . A G 4793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=8.3663;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.286;QD=23.61;ReadPosRankSum=1.663;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4793,534,0 chrXVI 165213 . T C 4345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=192;Dels=0.00;FS=2.976;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.812;QD=22.63;ReadPosRankSum=2.398;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4345,501,0 chrXVI 165244 . T C 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=160;Dels=0.00;FS=6.107;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.763;QD=21.57;ReadPosRankSum=2.353;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:2,152:160:99:3451,396,0 chrXVI 165388 . T C 4719.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=223;Dels=0.00;FS=3.557;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.512;QD=21.16;ReadPosRankSum=1.716;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:1,219:223:99:4719,543,0 chrXVI 165419 . T C 4614.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=214;Dels=0.00;FS=2.996;HaplotypeScore=14.6128;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.332;QD=21.56;ReadPosRankSum=2.415;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:3,209:214:99:4614,519,0 chrXVI 165730 . T C 1299 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.28;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1332,153,0 chrXVI 165775 . T A 991 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1024,111,0 chrXVI 165823 . C T 59.51 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=3.97;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:92,12,0 chrXVI 165899 . C G 1368 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.80;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1401,159,0 chrXVI 165921 . T A 1947 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1980,210,0 chrXVI 166118 . A C 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.170;DP=179;Dels=0.00;FS=7.560;HaplotypeScore=17.3965;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.877;QD=18.88;ReadPosRankSum=2.240;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:2,174:179:99:3380,384,0 chrXVI 166158 . G A 4602.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.90;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:4602,501,0 chrXVI 166274 . A G 4322.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.9574;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.75;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4322,477,0 chrXVI 166465 . C T 4177.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.68;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4177,453,0 chrXVI 166645 . G A 3688.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.2869;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.26;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3688,408,0 chrXVI 166927 . G C 3519.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3519,390,0 chrXVI 166977 . C T 3565.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.76;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3565,390,0 chrXVI 167227 . T C 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=3.424;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.959;QD=22.21;ReadPosRankSum=1.675;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2721,309,0 chrXVI 167661 . A C 2398 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.41;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2431,282,0 chrXVI 167832 . T C 2342 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=24.40;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2375,270,0 chrXVI 167905 . C G 2304 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.75;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2337,264,0 chrXVI 167998 . G A 1438 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=0;QD=14.24;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1471,162,0 chrXVI 167999 . A G 1385 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.26;MQ0=0;QD=13.99;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1418,162,0 chrXVI 168007 . G T 1356 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.72;MQ0=0;QD=12.79;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1389,156,0 chrXVI 168021 . T C 1098 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=10.98;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1131,126,0 chrXVI 168022 . C T 1083 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=10.83;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1116,126,0 chrXVI 168031 . C T 1134 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.83;MQ0=0;QD=10.04;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1167,132,0 chrXVI 168037 . T C 1171 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=3.048;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.70;MQ0=0;MQRankSum=-1.324;QD=9.92;ReadPosRankSum=2.387;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:1204,132,0 chrXVI 168040 . T C 1213 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=126;Dels=0.00;FS=3.041;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;MQRankSum=-2.254;QD=9.63;ReadPosRankSum=2.372;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:1246,138,0 chrXVI 168073 . T G 1226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=113;Dels=0.00;FS=6.295;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.36;MQ0=0;MQRankSum=-1.971;QD=10.85;ReadPosRankSum=2.406;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:1259,144,0 chrXVI 168076 . A G 1270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=39.94;MQ0=0;MQRankSum=1.550;QD=10.85;ReadPosRankSum=1.671;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,113:117:99:1303,144,0 chrXVI 168354 . T A 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.169;DP=149;Dels=0.00;FS=9.943;HaplotypeScore=7.5069;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.385;QD=22.94;ReadPosRankSum=2.912;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3418,323,0 chrXVI 168374 . C T 3130 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.36;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3163,345,0 chrXVI 168450 . C T 3444.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.8802;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3444,369,0 chrXVI 168697 . T C 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.304;QD=22.66;ReadPosRankSum=1.696;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2254,252,0 chrXVI 169035 . A G 4012.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=170;Dels=0.00;FS=7.377;HaplotypeScore=13.2209;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.802;QD=23.60;ReadPosRankSum=2.406;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4012,447,0 chrXVI 169468 . A G 2297 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.7340;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=19.47;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2330,264,0 chrXVI 169475 . G A 2287 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.01;FS=0.000;HaplotypeScore=5.8350;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=18.59;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2320,252,0 chrXVI 169520 . C T 1731 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5428;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=15.18;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1764,195,0 chrXVI 169613 . C T 1258 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=33.34;MQ0=0;QD=13.53;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1291,141,0 chrXVI 169623 . A G 1261 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.7669;MLEAC=2;MLEAF=1.00;MQ=33.23;MQ0=0;QD=13.56;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1294,141,0 chrXVI 169633 . G C 1327 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.5864;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=0;QD=13.40;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1360,153,0 chrXVI 169644 . G A 1446 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;QD=14.91;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1479,162,0 chrXVI 169651 . A G 1381 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.38;MQ0=0;QD=15.87;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1414,162,0 chrXVI 169653 . A G 1429 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;QD=15.88;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1462,162,0 chrXVI 169654 . A T 1417 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;QD=15.74;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1450,159,0 chrXVI 169696 . G C 2021 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=18.89;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2054,243,0 chrXVI 170172 . A G 3028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=2.983;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-2.147;QD=21.94;ReadPosRankSum=2.343;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3061,345,0 chrXVI 170349 . G A 3074 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.40;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3107,345,0 chrXVI 170630 . T C 2182 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.18;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2215,258,0 chrXVI 170647 . C T 2092 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.74;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2125,231,0 chrXVI 170718 . A G 2171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=1.355;QD=21.50;ReadPosRankSum=1.664;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2204,249,0 chrXVI 170759 . A G 2349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.589;QD=23.49;ReadPosRankSum=1.697;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2382,264,0 chrXVI 170856 . G A 2582 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=12.1897;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.52;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,116:120:99:2615,282,0 chrXVI 171075 . T C 3518.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.85;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3518,396,0 chrXVI 171270 . A T 2257 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=19.29;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2290,252,0 chrXVI 171525 . G A 2971 SnpCluster AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=20.07;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3004,330,0 chrXVI 171528 . C T 2912 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.08;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2945,324,0 chrXVI 171529 . A C 2837 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=3.070;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;MQRankSum=-0.142;QD=19.43;ReadPosRankSum=1.685;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2870,330,0 chrXVI 171534 . A G 2947 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=157;Dels=0.00;FS=3.094;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=0.474;QD=18.77;ReadPosRankSum=1.710;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2980,333,0 chrXVI 171612 . C T 3466.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.26;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3466,372,0 chrXVI 171708 . T C 3531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=152;Dels=0.00;FS=3.465;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-0.562;QD=23.23;ReadPosRankSum=1.709;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3531,396,0 chrXVI 171729 . T C 2642 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=20.32;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2675,312,0 chrXVI 171822 . G A 2586 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.88;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2619,285,0 chrXVI 172109 . C T 3786.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.27;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3786,411,0 chrXVI 172110 . T C 3628.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.961;DP=181;Dels=0.00;FS=2.427;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-0.372;QD=20.04;ReadPosRankSum=2.939;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:3628,414,0 chrXVI 172192 . A G 3842.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=177;Dels=0.00;FS=15.639;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.585;QD=21.71;ReadPosRankSum=2.756;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:3842,438,0 chrXVI 172402 . A G 4170.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.219;DP=197;Dels=0.00;FS=8.421;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=1.073;QD=21.17;ReadPosRankSum=3.389;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:4,192:197:99:4170,468,0 chrXVI 172453 . T C 3343.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3343,378,0 chrXVI 172786 . T C 2472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=131;Dels=0.00;FS=9.962;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.086;QD=18.87;ReadPosRankSum=2.354;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:2,126:131:99:2505,294,0 chrXVI 172925 . G A 2700 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2733,306,0 chrXVI 173054 . A T 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=4.726;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.164;QD=23.32;ReadPosRankSum=1.623;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2248,246,0 chrXVI 173330 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.0751;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.83;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3742,417,0 chrXVI 173535 . T G 3140 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=15.2259;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.51;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3173,354,0 chrXVI 173979 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=20.77;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2567,276,0 chrXVI 173981 . T C 2381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=125;Dels=0.00;FS=5.885;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;MQRankSum=-1.782;QD=19.05;ReadPosRankSum=2.879;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2414,282,0 chrXVI 174059 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.37;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3300,366,0 chrXVI 174069 . T C 3555.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=167;Dels=0.00;FS=5.830;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=1;MQRankSum=1.782;QD=21.29;ReadPosRankSum=2.934;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:4,163:167:99:3555,396,0 chrXVI 174144 . A G 529.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.680;DP=286;Dels=0.00;FS=87.804;HaplotypeScore=32.6899;MLEAC=1;MLEAF=0.500;MQ=31.09;MQ0=40;MQRankSum=-6.451;QD=1.85;ReadPosRankSum=1.454;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:180,101:286:99:559,0,2752 chrXVI 174699 . C T 4437.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=47.13;MQ0=0;QD=22.30;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,196:199:99:4437,480,0 chrXVI 174782 . T C 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-0.736;QD=22.65;ReadPosRankSum=1.708;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3330,384,0 chrXVI 175312 . G A 5199.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=13.4760;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.41;SB=-2.355e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5199,567,0 chrXVI 175582 . A G 4788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=208;Dels=0.00;FS=6.082;HaplotypeScore=16.5989;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.461;QD=23.02;ReadPosRankSum=2.937;SB=-2.572e+03 GT:AD:DP:GQ:PL 1/1:3,204:208:99:4788,528,0 chrXVI 175835 . G A 3793.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.71;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3793,408,0 chrXVI 175957 . C T 3034 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.27;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3067,330,0 chrXVI 176056 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=19.59;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2345,258,0 chrXVI 176099 . G A 2237 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=18.80;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2270,249,0 chrXVI 176327 . G A 3196 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.7977;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.99;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3229,351,0 chrXVI 177590 . C T 2853 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.53;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2886,318,0 chrXVI 177875 . A G 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.650;QD=24.21;ReadPosRankSum=1.691;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:2067,234,0 chrXVI 178167 . T C 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.912;QD=21.18;ReadPosRankSum=1.702;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2448,276,0 chrXVI 178396 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.59;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2689,294,0 chrXVI 178519 . G A 2398 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2431,264,0 chrXVI 178571 . A G 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=119;Dels=0.00;FS=6.524;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.180;QD=22.27;ReadPosRankSum=2.407;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:2,114:119:99:2683,300,0 chrXVI 178695 . C G 2311 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.9661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.01;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2344,270,0 chrXVI 179066 . G A 2456 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.32;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2489,270,0 chrXVI 179572 . G A 3574.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.15;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3574,390,0 chrXVI 179918 . C A 4011.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.59;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4011,435,0 chrXVI 180404 . T C 2708 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.34;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2741,315,0 chrXVI 180436 . A G 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=131;Dels=0.00;FS=8.247;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.817;QD=23.69;ReadPosRankSum=2.412;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3136,351,0 chrXVI 180538 . T C 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.154;QD=21.09;ReadPosRankSum=2.400;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3154,360,0 chrXVI 180828 . A G 3968.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=184;Dels=0.00;FS=5.812;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.731;QD=21.57;ReadPosRankSum=2.830;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:3,180:184:99:3968,462,0 chrXVI 181334 . G A 2384 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.08;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2417,267,0 chrXVI 181480 . A G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=132;Dels=0.00;FS=6.744;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.829;QD=21.74;ReadPosRankSum=2.375;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2903,336,0 chrXVI 181552 . T C 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.548;QD=23.12;ReadPosRankSum=1.710;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3607,405,0 chrXVI 181659 . C A 4023.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4023,441,0 chrXVI 181857 . T C 4058.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=175;Dels=0.00;FS=7.510;HaplotypeScore=8.0763;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.105;QD=23.19;ReadPosRankSum=2.407;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4058,462,0 chrXVI 181899 . C G 3770.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.44;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,163:168:99:3770,420,0 chrXVI 182020 . C T 2857 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2890,315,0 chrXVI 182053 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.88;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3654,393,0 chrXVI 182191 . A G 3025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=131;Dels=0.00;FS=3.146;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.705;QD=23.09;ReadPosRankSum=1.705;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3058,348,0 chrXVI 182353 . C T 2646 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.28;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2679,291,0 chrXVI 182784 . G A 3618.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=14.0037;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.80;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3618,396,0 chrXVI 182913 . T A 2273 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.86;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2306,252,0 chrXVI 182943 . C G 2149 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.86;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2182,246,0 chrXVI 183101 . T C 1765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.111;QD=22.63;ReadPosRankSum=2.387;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1798,201,0 chrXVI 183364 . G A 3567.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.02;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,159:162:99:3567,393,0 chrXVI 183385 . A G 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=159;Dels=0.00;FS=3.842;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.346;QD=18.61;ReadPosRankSum=1.598;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:1,154:159:99:2992,351,0 chrXVI 183419 . A C 3067 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.05;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3100,354,0 chrXVI 183482 . A G 2617 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.05;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2650,306,0 chrXVI 183484 . A G 2648 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=17.89;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2681,312,0 chrXVI 183510 . G A 2727 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=17.94;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2760,291,0 chrXVI 184256 . G A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3405,369,0 chrXVI 185020 . G A 3358.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.446;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.925;QD=24.87;ReadPosRankSum=0.638;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3358,344,0 chrXVI 185186 . C T 2768 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=11.3161;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.86;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2801,306,0 chrXVI 185261 . A G 3116 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.43;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3149,354,0 chrXVI 185392 . T C 4009.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=346.7986;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-1.501;QD=16.70;ReadPosRankSum=1.703;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:1,239:240:99:4009,456,0 chrXVI 185404 . T C 642.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.065;DP=244;Dels=0.01;FS=6.237;HaplotypeScore=198.5368;MLEAC=1;MLEAF=0.500;MQ=54.49;MQ0=0;MQRankSum=0.311;QD=2.63;ReadPosRankSum=8.943;SB=-1.262e+03 GT:AD:DP:GQ:PL 0/1:41,199:241:99:672,0,627 chrXVI 185512 . G T 5095.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=18.0048;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.37;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5095,564,0 chrXVI 186190 . A G 4164.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=189;Dels=0.00;FS=6.923;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.809;QD=22.03;ReadPosRankSum=2.410;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:2,186:189:99:4164,477,0 chrXVI 186214 . C T 4101.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.8998;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.17;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4101,444,0 chrXVI 186540 . G A 3478.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.15;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3478,372,0 chrXVI 186844 . A G 2886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=140;Dels=0.00;FS=7.698;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.518;QD=20.61;ReadPosRankSum=2.415;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2919,333,0 chrXVI 186862 . T C 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.607;QD=20.14;ReadPosRankSum=1.687;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3154,357,0 chrXVI 187240 . T C 6992.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=11.3175;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.229;QD=23.08;ReadPosRankSum=2.977;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:3,300:303:99:6992,807,0 chrXVI 187312 . G A 4661.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=157.2264;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=16.95;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,275:275:99:4661,551,0 chrXVI 187673 . A T 4468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.772;QD=20.04;ReadPosRankSum=1.701;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:4468,486,0 chrXVI 187711 . G A 4526.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.15;SB=-1.844e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4526,486,0 chrXVI 187869 . A G 2935 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.11;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2968,336,0 chrXVI 188250 . A C 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.691;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=-0.168;QD=22.35;ReadPosRankSum=1.704;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2804,327,0 chrXVI 188297 . C T 3670.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=26.03;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3670,396,0 chrXVI 188515 . A G 3945.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.215;QD=23.21;ReadPosRankSum=1.650;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3945,444,0 chrXVI 188802 . C T 2499 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.99;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2532,276,0 chrXVI 188889 . T C 1869 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.88;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1902,216,0 chrXVI 188954 . T A 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=140;Dels=0.00;FS=3.075;HaplotypeScore=8.1629;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.681;QD=17.16;ReadPosRankSum=1.656;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2435,276,0 chrXVI 189099 . C T 2576 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.42;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2609,282,0 chrXVI 189266 . A G 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=150;Dels=0.00;FS=6.861;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-2.349;QD=22.09;ReadPosRankSum=2.416;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:2,145:150:99:3314,369,0 chrXVI 189314 . C T 4407.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=25.62;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4407,474,0 chrXVI 189500 . T C 2518 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.31;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2551,300,0 chrXVI 189526 . C G 2447 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=19.89;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2480,285,0 chrXVI 189738 . G A 1820 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.75;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1853,201,0 chrXVI 189850 . C T 2938 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.69;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2971,321,0 chrXVI 190020 . A G 2439 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.78;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,108:112:99:2472,276,0 chrXVI 190367 . A T 3560.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3560,387,0 chrXVI 190515 . A G 2941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=139;Dels=0.00;FS=2.839;HaplotypeScore=14.1295;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.775;QD=21.16;ReadPosRankSum=2.414;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2974,339,0 chrXVI 190713 . T C 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=139;Dels=0.00;FS=3.014;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.822;QD=21.86;ReadPosRankSum=2.414;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3072,354,0 chrXVI 190807 . G C 3188 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.45;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3221,357,0 chrXVI 190868 . A G 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=153;Dels=0.00;FS=9.470;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=1.338;QD=22.89;ReadPosRankSum=2.954;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:3502,393,0 chrXVI 191121 . C T 2824 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.14;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2857,312,0 chrXVI 191167 . T G 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=93;Dels=0.00;FS=3.452;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=1.099;QD=21.35;ReadPosRankSum=1.695;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2019,231,0 chrXVI 191176 . C T 2159 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=23.22;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2192,237,0 chrXVI 191183 . T C 1980 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.29;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2013,231,0 chrXVI 191256 . C T 2152 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.96;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2185,237,0 chrXVI 191290 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.25;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2404,261,0 chrXVI 191944 . C T 3355.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.0055;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.79;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3355,378,0 chrXVI 192044 . A G 4748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=207;Dels=0.00;FS=3.026;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.421;QD=22.94;ReadPosRankSum=2.426;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4748,531,0 chrXVI 192260 . T C 4222.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=194;Dels=0.00;FS=6.505;HaplotypeScore=14.4527;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.525;QD=21.76;ReadPosRankSum=2.424;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4222,468,0 chrXVI 193082 . C T 2480 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.83;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2513,276,0 chrXVI 193187 . C T 3021 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.98;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,140:144:99:3054,330,0 chrXVI 193476 . G A 2799 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.4765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2832,312,0 chrXVI 193737 . G C 2647 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.88;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2680,309,0 chrXVI 193773 . A G 2928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=140;Dels=0.00;FS=2.984;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.167;QD=20.91;ReadPosRankSum=2.344;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2961,333,0 chrXVI 193924 . T C 3830.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=24.71;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3830,426,0 chrXVI 193935 . A G 3124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=4.143;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;MQRankSum=-1.655;QD=23.14;ReadPosRankSum=1.655;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3157,363,0 chrXVI 193956 . G A 1803 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;QD=22.82;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1836,198,0 chrXVI 193968 . A C 1197 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=29.1998;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=1;QD=11.85;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,91:101:99:1230,147,0 chrXVI 194113 . T C 747 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.029;DP=124;Dels=0.00;FS=7.261;HaplotypeScore=11.5752;MLEAC=2;MLEAF=1.00;MQ=29.22;MQ0=1;MQRankSum=0.431;QD=6.02;ReadPosRankSum=2.387;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:2,116:124:87:780,87,0 chrXVI 194118 . G A 773 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;QD=7.22;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:90:806,90,0 chrXVI 194119 . T C 754 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=107;Dels=0.00;FS=7.580;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=29.05;MQ0=0;MQRankSum=-0.518;QD=7.05;ReadPosRankSum=2.404;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:90:787,90,0 chrXVI 194124 . A G 851 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.65;MQ0=0;QD=7.03;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:884,99,0 chrXVI 194127 . C T 978 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.28;MQ0=0;QD=7.82;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1011,111,0 chrXVI 194152 . C T 1766 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=38.79;MQ0=0;QD=11.47;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:1799,192,0 chrXVI 194758 . G A 4073.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=6.7082;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.78;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4073,453,0 chrXVI 194818 . A G 3838.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.770;DP=181;Dels=0.00;FS=10.972;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.307;QD=21.20;ReadPosRankSum=3.726;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:5,176:181:99:3838,435,0 chrXVI 194832 . T C 3530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=173;Dels=0.00;FS=7.599;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.279;QD=20.40;ReadPosRankSum=2.421;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:2,170:173:99:3530,408,0 chrXVI 194931 . C T 3935.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.4733;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.75;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:3935,432,0 chrXVI 195093 . T C 2384 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=15.6362;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=16.79;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2417,279,0 chrXVI 195109 . G A 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.5834;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=1.481;QD=17.46;ReadPosRankSum=-1.564;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,123:131:99:2320,261,0 chrXVI 195142 . G A 2684 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.4139;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=17.77;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:1,147:151:99:2717,297,0 chrXVI 195253 . A G 3687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=19.3295;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.701;QD=20.60;ReadPosRankSum=1.693;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3687,414,0 chrXVI 195401 . G A 3035 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.17;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3068,336,0 chrXVI 195558 . G A 2472 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.16;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2505,273,0 chrXVI 195564 . C A 2162 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=18.32;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2195,246,0 chrXVI 195759 . G A 2984 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.4115;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=23.13;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3017,327,0 chrXVI 195862 . C G 2898 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=6.8972;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=20.41;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:2931,327,0 chrXVI 195879 . C T 2864 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=111.1968;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=19.09;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2897,318,0 chrXVI 196424 . T C 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.734;QD=22.90;ReadPosRankSum=1.673;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4053,465,0 chrXVI 196579 . T C 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=159;Dels=0.00;FS=3.358;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-1.532;QD=18.87;ReadPosRankSum=1.710;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:1,155:159:99:3033,357,0 chrXVI 196580 . A G 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=0.636;QD=19.22;ReadPosRankSum=1.491;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3089,357,0 chrXVI 196727 . A T 3686.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.760;QD=22.20;ReadPosRankSum=1.584;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3686,408,0 chrXVI 197348 . T A 4519.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=9.6840;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.52;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4519,501,0 chrXVI 197435 . C T 5080.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=22.3302;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.09;SB=-2.648e+03 GT:AD:DP:GQ:PL 1/1:0,218:220:99:5080,549,0 chrXVI 197471 . A G 5236.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=225;Dels=0.00;FS=10.449;HaplotypeScore=8.7001;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.987;QD=23.27;ReadPosRankSum=2.942;SB=-2.465e+03 GT:AD:DP:GQ:PL 1/1:3,221:225:99:5236,582,0 chrXVI 197495 . A G 4471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=202;Dels=0.00;FS=10.325;HaplotypeScore=6.3433;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.100;QD=22.13;ReadPosRankSum=2.926;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:3,199:202:99:4471,501,0 chrXVI 197642 . G A 3671.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.0244;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.09;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3671,396,0 chrXVI 197759 . G A 529.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.311;DP=131;Dels=0.00;FS=25.175;HaplotypeScore=26.3240;MLEAC=1;MLEAF=0.500;MQ=46.56;MQ0=0;MQRankSum=3.271;QD=4.04;ReadPosRankSum=1.464;SB=-2.880e+02 GT:AD:DP:GQ:PL 0/1:86,45:131:99:559,0,1191 chrXVI 197765 . A G 617.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.573;DP=134;Dels=0.00;FS=30.826;HaplotypeScore=28.9957;MLEAC=1;MLEAF=0.500;MQ=46.90;MQ0=0;MQRankSum=4.672;QD=4.60;ReadPosRankSum=3.825;SB=-3.160e+02 GT:AD:DP:GQ:PL 0/1:84,50:134:99:647,0,1094 chrXVI 198072 . G A 2628 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.68;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2661,288,0 chrXVI 198304 . A T 2649 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2682,288,0 chrXVI 198355 . A T 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.163;QD=21.67;ReadPosRankSum=1.634;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2373,267,0 chrXVI 198637 . A G 3188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=145;Dels=0.00;FS=7.562;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.619;QD=21.99;ReadPosRankSum=2.195;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3221,360,0 chrXVI 198643 . A G 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.379;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-0.192;QD=20.27;ReadPosRankSum=1.655;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2769,327,0 chrXVI 198653 . G A 2805 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=20.62;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2838,306,0 chrXVI 198810 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.883;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4565;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.458;QD=21.82;ReadPosRankSum=0.346;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3426,364,0 chrXVI 199088 . T C 2970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.723;QD=23.39;ReadPosRankSum=1.705;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3003,336,0 chrXVI 199138 . T C 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.136;DP=143;Dels=0.00;FS=2.778;HaplotypeScore=11.3255;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=1.107;QD=21.43;ReadPosRankSum=2.397;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:3098,357,0 chrXVI 199177 . G A 3052 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.5119;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.48;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3085,348,0 chrXVI 199204 . C G 2591 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=18.51;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2624,288,0 chrXVI 199210 . C A 2473 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=18.18;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2506,273,0 chrXVI 199239 . C T 2080 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=17.93;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2113,228,0 chrXVI 199298 . T C 2447 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.08;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2480,279,0 chrXVI 199401 . T C 2046 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.06;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2079,231,0 chrXVI 199576 . T A 2797 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.11;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2830,318,0 chrXVI 199685 . A G 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=-0.215;QD=22.44;ReadPosRankSum=1.656;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3107,351,0 chrXVI 199707 . A G 2806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=-0.378;QD=17.87;ReadPosRankSum=1.688;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:2839,324,0 chrXVI 199717 . C T 3196 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=12.7544;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=18.26;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3229,354,0 chrXVI 199801 . T C 4500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=197;Dels=0.00;FS=2.973;HaplotypeScore=9.1882;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.069;QD=22.84;ReadPosRankSum=2.425;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4500,513,0 chrXVI 199875 . G A 3721.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.02;FS=0.000;HaplotypeScore=9.1440;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.11;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3721,402,0 chrXVI 199884 . C T 3764.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=20.46;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3764,426,0 chrXVI 200053 . G A 4211.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=17.5637;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.05;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4211,456,0 chrXVI 200110 . A G 5111.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.9102;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-0.955;QD=22.82;ReadPosRankSum=1.701;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:5111,579,0 chrXVI 200253 . A G 3865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=174;Dels=0.00;FS=3.490;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.604;QD=22.21;ReadPosRankSum=1.692;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3865,432,0 chrXVI 200515 . A G 3772.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=3.036;HaplotypeScore=6.9224;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=1.064;QD=22.06;ReadPosRankSum=1.712;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3772,426,0 chrXVI 200534 . G A 3691.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=21.34;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3691,396,0 chrXVI 200545 . A G 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.372;DP=163;Dels=0.00;FS=3.037;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=0.967;QD=18.34;ReadPosRankSum=1.392;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3022,331,0 chrXVI 200605 . C G 2665 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=19.17;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2698,297,0 chrXVI 200631 . A G 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.227;DP=129;Dels=0.00;FS=12.952;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.251;QD=21.26;ReadPosRankSum=3.390;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:4,125:129:99:2776,306,0 chrXVI 200650 . A G 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.701;DP=138;Dels=0.00;FS=6.091;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.540;QD=19.53;ReadPosRankSum=2.905;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:2728,312,0 chrXVI 200671 . A G 2516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.168;QD=19.50;ReadPosRankSum=1.705;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2549,297,0 chrXVI 200879 . G A 2620 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.96;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2653,288,0 chrXVI 200894 . C T 2630 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.21;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2663,285,0 chrXVI 200983 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=24.24;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3136,339,0 chrXVI 201034 . C T 2683 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.93;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2716,297,0 chrXVI 201192 . A G 2647 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=128;Dels=0.00;FS=3.404;HaplotypeScore=5.3421;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=-1.705;QD=20.68;ReadPosRankSum=1.705;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2680,300,0 chrXVI 201196 . T C 2477 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=129;Dels=0.02;FS=0.000;HaplotypeScore=4.5534;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;MQRankSum=0.423;QD=19.20;ReadPosRankSum=1.432;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2510,288,0 chrXVI 201198 . C T 2489 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=125;Dels=0.01;FS=7.106;HaplotypeScore=4.5534;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=0.109;QD=19.91;ReadPosRankSum=2.331;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2522,276,0 chrXVI 201262 . A T 3014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=146;Dels=0.00;FS=8.795;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.720;QD=20.64;ReadPosRankSum=2.382;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3047,339,0 chrXVI 201473 . C T 4810.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.35;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,201:206:99:4810,522,0 chrXVI 202266 . A G 3389.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.6184;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.87;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3389,378,0 chrXVI 202808 . C T 1809 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1842,198,0 chrXVI 202926 . T C 2381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=4.548;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.912;QD=20.89;ReadPosRankSum=1.702;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2414,267,0 chrXVI 203409 . T A 4806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=200;Dels=0.00;FS=2.578;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.742;QD=24.03;ReadPosRankSum=2.894;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:4806,528,0 chrXVI 203462 . T C 5328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.820;QD=23.58;ReadPosRankSum=1.717;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,223:226:99:5328,606,0 chrXVI 203786 . G A 6774.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=15.8102;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=24.81;SB=-3.415e+03 GT:AD:DP:GQ:PL 1/1:0,271:273:99:6774,736,0 chrXVI 203830 . C T 6418.01 PASS AC=2;AF=1.00;AN=2;DP=291;Dels=0.00;FS=0.000;HaplotypeScore=7.3363;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.06;SB=-3.519e+03 GT:AD:DP:GQ:PL 1/1:0,288:290:99:6418,723,0 chrXVI 203846 . G T 6660.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=12.2481;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.65;SB=-3.462e+03 GT:AD:DP:GQ:PL 1/1:0,292:294:99:6660,735,0 chrXVI 204722 . C T 4229.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.36;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,195:198:99:4229,462,0 chrXVI 204785 . G A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.69;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3861,417,0 chrXVI 204854 . T G 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=134;Dels=0.00;FS=4.771;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.417;QD=21.42;ReadPosRankSum=1.706;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2903,327,0 chrXVI 205023 . C A 2833 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=13.1604;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.68;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2866,324,0 chrXVI 205415 . C G 4730.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.00;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,213:215:99:4730,555,0 chrXVI 205903 . G A 3967.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3967,429,0 chrXVI 206053 . T C 3507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=165;Dels=0.00;FS=10.829;HaplotypeScore=4.0640;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.626;QD=21.25;ReadPosRankSum=2.933;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:3,161:165:99:3507,396,0 chrXVI 206075 . G A 3387.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.40;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3387,369,0 chrXVI 206195 . T G 2841 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.74;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2874,327,0 chrXVI 206288 . T C 3033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=4.061;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.783;QD=22.47;ReadPosRankSum=1.706;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3066,345,0 chrXVI 206456 . G A 3035 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.1381;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.53;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3068,333,0 chrXVI 206683 . T C 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=114;Dels=0.00;FS=3.493;HaplotypeScore=12.6330;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.580;QD=20.70;ReadPosRankSum=1.702;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2393,273,0 chrXVI 206841 . C T 2868 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.32;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2901,312,0 chrXVI 206880 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.2992;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.56;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,120:124:99:2831,303,0 chrXVI 206906 . T C 2618 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.61;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2651,303,0 chrXVI 207191 . A G 4280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=185;Dels=0.00;FS=8.234;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.710;QD=23.14;ReadPosRankSum=2.423;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4280,504,0 chrXVI 207344 . T A 5421.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.589;DP=231;Dels=0.00;FS=16.322;HaplotypeScore=20.4269;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.186;QD=23.47;ReadPosRankSum=3.806;SB=-2.702e+03 GT:AD:DP:GQ:PL 1/1:5,226:231:99:5421,588,0 chrXVI 207644 . G A 7369.01 PASS AC=2;AF=1.00;AN=2;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=11.2879;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.87;SB=-3.070e+03 GT:AD:DP:GQ:PL 1/1:0,336:337:99:7369,796,0 chrXVI 207823 . A T 3408.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.470;QD=20.91;ReadPosRankSum=1.689;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3408,381,0 chrXVI 208076 . C T 2991 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.74;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3024,327,0 chrXVI 208681 . C T 4229.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.4796;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.36;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4229,462,0 chrXVI 208687 . A G 3733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=190;Dels=0.00;FS=6.470;HaplotypeScore=3.9631;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-1.371;QD=19.65;ReadPosRankSum=2.424;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:2,187:190:99:3733,441,0 chrXVI 208816 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.36;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3298,357,0 chrXVI 208843 . T C 3470.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=5.469;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.436;QD=22.24;ReadPosRankSum=1.710;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3470,384,0 chrXVI 208933 . G T 2441 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.99;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2474,270,0 chrXVI 209844 . G A 2469 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.07;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2502,270,0 chrXVI 209982 . C T 1912 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.73;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1945,216,0 chrXVI 210131 . C T 2262 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.96;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2295,255,0 chrXVI 210156 . A G 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=104;Dels=0.00;FS=11.383;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=0.194;QD=18.11;ReadPosRankSum=2.874;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:99:1916,225,0 chrXVI 210171 . C T 1933 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.33;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1966,219,0 chrXVI 210288 . T G 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=3.559;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.029;QD=21.01;ReadPosRankSum=1.703;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2533,291,0 chrXVI 210366 . G A 3004 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.93;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3037,327,0 chrXVI 210669 . A G 1954 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1987,225,0 chrXVI 210711 . T G 2134 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.70;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2167,246,0 chrXVI 210762 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.29;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2373,258,0 chrXVI 210783 . T C 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=110;Dels=0.00;FS=6.061;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=1.152;QD=21.99;ReadPosRankSum=2.405;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2452,273,0 chrXVI 210832 . C T 2634 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=23.52;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2667,294,0 chrXVI 210930 . G A 3552.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.16;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3552,387,0 chrXVI 211043 . C T 2660 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.62;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2693,300,0 chrXVI 211065 . C G 2604 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.50;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2637,291,0 chrXVI 211075 . G A 2572 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.63;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2605,282,0 chrXVI 211097 . T C 2199 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=17.31;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2232,258,0 chrXVI 211577 . T A 833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.238;DP=42;Dels=0.00;FS=10.212;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.50;MQ0=0;MQRankSum=1.650;QD=19.83;ReadPosRankSum=-1.733;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:1,41:42:96:866,96,0 chrXVI 211580 . T A 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;MQRankSum=0.731;QD=2.79;ReadPosRankSum=-0.731;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,4:5:6:45,6,0 chrXVI 211951 . T A 158.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.20;MQ0=0;MQRankSum=-0.393;QD=3.86;ReadPosRankSum=2.330;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:2,39:41:21:191,21,0 chrXVI 212295 . C A 2416 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.38;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2449,267,0 chrXVI 212370 . A G 2883 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9377;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2916,339,0 chrXVI 212526 . T C 3814.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.654;QD=24.45;ReadPosRankSum=2.402;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:3814,435,0 chrXVI 212736 . A G 1919 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.670;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=11.3770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.804;QD=17.77;ReadPosRankSum=3.758;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,103:108:99:1952,222,0 chrXVI 212773 . G A 1256 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1289,144,0 chrXVI 213132 . C T 2706 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.33;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2739,297,0 chrXVI 213381 . T C 3812.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.6555;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.83;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3812,423,0 chrXVI 213463 . G T 3201 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.06;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3234,369,0 chrXVI 213536 . C T 3840.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=24.15;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3840,417,0 chrXVI 213597 . T A 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.9785;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-1.397;QD=19.30;ReadPosRankSum=1.693;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3435,393,0 chrXVI 213603 . A G 3374.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=4.243;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.097;QD=18.85;ReadPosRankSum=1.713;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3374,399,0 chrXVI 214028 . T C 2956 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.28;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2989,342,0 chrXVI 214197 . T C 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=144;Dels=0.00;FS=3.933;HaplotypeScore=10.4733;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.609;QD=20.28;ReadPosRankSum=1.658;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,140:144:99:2954,339,0 chrXVI 214333 . G A 3523.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.90;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3523,378,0 chrXVI 214358 . A C 2703 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.34;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2736,315,0 chrXVI 214684 . T G 3878.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=14.2403;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.939;QD=21.66;ReadPosRankSum=1.713;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3878,432,0 chrXVI 214724 . C T 4159.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=15.3073;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.12;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4159,459,0 chrXVI 214866 . T C 5155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=239;Dels=0.00;FS=3.159;HaplotypeScore=8.4508;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-0.640;QD=21.57;ReadPosRankSum=1.718;SB=-2.955e+03 GT:AD:DP:GQ:PL 1/1:1,237:239:99:5155,600,0 chrXVI 214888 . T A 5496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=250;Dels=0.00;FS=3.396;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.231;QD=21.98;ReadPosRankSum=1.662;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:1,249:250:99:5496,597,0 chrXVI 214963 . A G 4809.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.86;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:4809,561,0 chrXVI 215112 . A C 1694 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.1207;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=11.00;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:1727,198,0 chrXVI 215126 . A G 1894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=-1.333;QD=11.48;ReadPosRankSum=1.711;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:1927,222,0 chrXVI 215183 . T C 2469 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=15.93;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2502,276,0 chrXVI 215186 . T G 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=151;Dels=0.00;FS=6.662;HaplotypeScore=9.7425;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;MQRankSum=-0.291;QD=15.33;ReadPosRankSum=2.416;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:2348,273,0 chrXVI 215587 . G C 2068 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.27;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2101,234,0 chrXVI 215718 . C A 1355 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.1763;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=16.33;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,77:83:99:1388,153,0 chrXVI 215778 . C T 2444 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=23.96;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2477,270,0 chrXVI 215926 . A C 2799 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.52;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,115:119:99:2832,324,0 chrXVI 216015 . A G 3130 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.9300;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.46;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3163,348,0 chrXVI 216037 . T C 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.155;DP=143;Dels=0.00;FS=2.767;HaplotypeScore=6.6000;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-1.653;QD=19.31;ReadPosRankSum=2.415;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:2795,324,0 chrXVI 216100 . G A 3702.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.3596;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.88;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3702,405,0 chrXVI 216222 . G A 3614.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=11.4320;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.65;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3614,402,0 chrXVI 216369 . T C 4044.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=14.0756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4044,450,0 chrXVI 216683 . T C 3310.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.15;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:3310,387,0 chrXVI 216714 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.50;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3159,339,0 chrXVI 216780 . T C 1352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.427;DP=89;Dels=0.00;FS=44.844;HaplotypeScore=31.7903;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=2.229;QD=15.19;ReadPosRankSum=2.988;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:10,77:89:99:1385,121,0 chrXVI 217014 . T C 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=114;Dels=0.00;FS=5.773;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;MQRankSum=-1.098;QD=21.21;ReadPosRankSum=2.938;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:3,110:114:99:2451,282,0 chrXVI 217016 . A G 2457 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=21.74;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2490,276,0 chrXVI 217064 . T C 1945 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=16.77;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1978,231,0 chrXVI 217075 . G A 1914 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.95;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1947,213,0 chrXVI 217092 . A G 1867 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=16.09;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1900,222,0 chrXVI 217188 . T C 3506.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.952;QD=23.22;ReadPosRankSum=1.686;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3506,402,0 chrXVI 217218 . A G 3484.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.91;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,155:159:99:3484,408,0 chrXVI 217245 . G C 3657.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8811;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.15;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3657,408,0 chrXVI 217275 . A C 4641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.760;DP=214;Dels=0.00;FS=15.404;HaplotypeScore=7.7954;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=0.646;QD=21.69;ReadPosRankSum=2.948;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:3,210:214:99:4641,516,0 chrXVI 217557 . A C 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=229;Dels=0.00;FS=2.985;HaplotypeScore=18.7764;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.005;QD=17.88;ReadPosRankSum=2.428;SB=-2.652e+03 GT:AD:DP:GQ:PL 1/1:2,225:229:99:4094,474,0 chrXVI 217572 . C T 3591.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.8558;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=17.02;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:3591,402,0 chrXVI 217929 . A G 3203 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.27;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3236,381,0 chrXVI 218115 . C T 3708.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.47;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3708,399,0 chrXVI 218188 . T C 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=155;Dels=0.00;FS=2.959;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.053;QD=22.48;ReadPosRankSum=2.323;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3485,387,0 chrXVI 218294 . G C 2528 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.24;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2561,288,0 chrXVI 218415 . T C 2746 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2779,321,0 chrXVI 218530 . A G 2795 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.91;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2828,321,0 chrXVI 218554 . C G 2462 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.23;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2495,279,0 chrXVI 218575 . A G 2288 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.11;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2321,264,0 chrXVI 218810 . G A 2766 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.64;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2799,303,0 chrXVI 218831 . C T 3045 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.75;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3078,330,0 chrXVI 219029 . C T 4253.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.16;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:4253,462,0 chrXVI 219131 . G A 4242.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4242,459,0 chrXVI 220130 . T A 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=3.193;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.119;QD=24.12;ReadPosRankSum=1.613;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3521,384,0 chrXVI 220163 . T C 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.736;DP=164;Dels=0.00;FS=6.101;HaplotypeScore=18.2064;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.773;QD=23.30;ReadPosRankSum=2.933;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:3,161:164:99:3822,420,0 chrXVI 221029 . A G 4174.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.6682;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.99;SB=-2.058e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4174,486,0 chrXVI 221076 . T C 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=1.391;QD=22.24;ReadPosRankSum=1.647;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2769,315,0 chrXVI 221149 . C T 3521.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=24.45;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3521,384,0 chrXVI 221325 . A G 2532 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=21.28;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2565,288,0 chrXVI 221327 . A T 2675 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=22.29;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2708,297,0 chrXVI 221382 . C T 2890 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.09;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2923,318,0 chrXVI 221495 . G A 2174 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.88;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2207,240,0 chrXVI 221729 . T A 2341 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.4578;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.18;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2374,258,0 chrXVI 221764 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2771,297,0 chrXVI 221891 . C T 2616 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.60;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2649,291,0 chrXVI 221892 . C T 2504 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.56;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2537,279,0 chrXVI 221929 . A T 3058 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.25;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3091,345,0 chrXVI 222062 . A G 4026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=171;Dels=0.00;FS=7.870;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.380;QD=23.54;ReadPosRankSum=2.348;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:2,168:171:99:4026,453,0 chrXVI 222162 . C T 4334.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.55;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4334,462,0 chrXVI 222174 . G A 4083.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.07;SB=-2.136e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4083,444,0 chrXVI 222390 . T C 2859 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.82;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2892,321,0 chrXVI 222598 . G A 4907.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.6160;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.66;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4907,534,0 chrXVI 222732 . C A 6207.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.09;SB=-3.607e+03 GT:AD:DP:GQ:PL 1/1:0,280:281:99:6207,687,0 chrXVI 222796 . G T 5801.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.37;SB=-2.895e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:5801,630,0 chrXVI 222905 . G A 5722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.786;DP=238;Dels=0.00;FS=4.034;HaplotypeScore=16.0332;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.990;QD=24.04;ReadPosRankSum=-1.150;SB=-2.500e+03 GT:AD:DP:GQ:PL 1/1:1,237:238:99:5722,604,0 chrXVI 222931 . C T 4632.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.41;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,225:227:99:4632,531,0 chrXVI 222956 . A G 4715.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=229;Dels=0.00;FS=2.807;HaplotypeScore=8.8059;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.275;QD=20.59;ReadPosRankSum=2.374;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:2,226:229:99:4715,540,0 chrXVI 222996 . T C 3806.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=185;Dels=0.00;FS=11.111;HaplotypeScore=8.0600;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.393;QD=20.57;ReadPosRankSum=2.962;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:3,181:185:99:3806,438,0 chrXVI 223706 . C T 5454.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=13.0368;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.13;SB=-2.735e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5454,594,0 chrXVI 224305 . T G 2357 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2390,267,0 chrXVI 224341 . A G 2159 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2192,261,0 chrXVI 224569 . G A 3130 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:3163,342,0 chrXVI 224815 . T C 5523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.092;DP=238;Dels=0.00;FS=4.680;HaplotypeScore=19.1008;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.118;QD=23.21;ReadPosRankSum=4.165;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:6,231:238:99:5523,636,0 chrXVI 224848 . A G 6382.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=12.0557;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.45;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:6382,717,0 chrXVI 225172 . C T 4752.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=19.2208;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.52;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,209:211:99:4752,528,0 chrXVI 225206 . T C 5398.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=242;Dels=0.00;FS=7.754;HaplotypeScore=16.7549;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.451;QD=22.31;ReadPosRankSum=2.368;SB=-2.419e+03 GT:AD:DP:GQ:PL 1/1:2,239:242:99:5398,609,0 chrXVI 225452 . G T 3834.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.4321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.61;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3834,417,0 chrXVI 225486 . T A 4217.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=16.7276;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.96;SB=-2.459e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4217,456,0 chrXVI 225550 . A G 4001.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.305;QD=21.98;ReadPosRankSum=1.713;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4001,465,0 chrXVI 225773 . A G 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.947;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.8690;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.179;QD=21.61;ReadPosRankSum=1.391;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3145,335,0 chrXVI 225805 . C A 2547 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.58;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2580,282,0 chrXVI 225856 . G T 2901 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.4260;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.87;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2934,324,0 chrXVI 225893 . T C 3303.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3303,369,0 chrXVI 226313 . A G 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.5008;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.732;QD=22.24;ReadPosRankSum=1.677;SB=-2.379e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:4159,477,0 chrXVI 226508 . G A 6184.01 PASS AC=2;AF=1.00;AN=2;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=12.2320;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.25;SB=-2.490e+03 GT:AD:DP:GQ:PL 1/1:0,262:266:99:6184,675,0 chrXVI 226571 . C A 4933.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=20.73;SB=-3.108e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:4933,534,0 chrXVI 226573 . A C 4502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=-0.037;QD=19.08;ReadPosRankSum=1.687;SB=-2.944e+03 GT:AD:DP:GQ:PL 1/1:1,232:236:99:4502,513,0 chrXVI 226604 . C T 4597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=4.2440;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-0.972;QD=19.40;ReadPosRankSum=1.644;SB=-2.988e+03 GT:AD:DP:GQ:PL 1/1:1,236:237:99:4597,501,0 chrXVI 226631 . C T 5061.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=11.9328;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=17.95;SB=-3.379e+03 GT:AD:DP:GQ:PL 1/1:0,281:282:99:5061,558,0 chrXVI 226827 . A G 3974.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=1.493;QD=19.48;ReadPosRankSum=1.715;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:3974,444,0 chrXVI 226841 . C G 3544.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=17.04;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:3544,411,0 chrXVI 226850 . G A 3601.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=16.83;SB=-1.958e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:3601,399,0 chrXVI 227288 . A C 4298.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=16.5506;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.76;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4298,492,0 chrXVI 227828 . A G 2943 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2976,348,0 chrXVI 227910 . C T 4098.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.15;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4098,444,0 chrXVI 227980 . A G 3881.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=180;Dels=0.00;FS=2.556;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.844;QD=21.56;ReadPosRankSum=2.939;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:3881,450,0 chrXVI 228063 . T C 4342.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.5084;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.97;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4342,495,0 chrXVI 228661 . A G 3926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.062;QD=21.69;ReadPosRankSum=1.713;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3926,441,0 chrXVI 228781 . C T 4269.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.7528;MLEAC=2;MLEAF=1.00;MQ=60.89;MQ0=0;QD=22.35;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4269,465,0 chrXVI 228950 . G A 4145.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=16.7652;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.55;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:4145,447,0 chrXVI 229093 . C T 5206.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=13.2109;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.45;SB=-2.523e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5206,556,0 chrXVI 229246 . A C 5190.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=8.1481;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.09;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5190,606,0 chrXVI 229273 . G A 4958.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.0441;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.39;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4958,546,0 chrXVI 229636 . T C 2067 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.87;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2100,243,0 chrXVI 229768 . C T 2758 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.37;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2791,300,0 chrXVI 229945 . T C 2207 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.06;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2240,252,0 chrXVI 229960 . A G 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-0.706;QD=18.84;ReadPosRankSum=1.700;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2068,240,0 chrXVI 230063 . G C 2479 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.56;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2512,282,0 chrXVI 230442 . G A 2566 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.98;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2599,279,0 chrXVI 230587 . A G 2346 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2379,273,0 chrXVI 230687 . T A 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=152;Dels=0.00;FS=2.912;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-0.089;QD=19.41;ReadPosRankSum=2.401;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:2,150:152:99:2984,321,0 chrXVI 230703 . C T 2718 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.14;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2751,303,0 chrXVI 230887 . T C 2719 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=17.6711;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=19.56;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2752,312,0 chrXVI 231052 . T C 3228.29 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.854;QD=22.58;ReadPosRankSum=1.708;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3261,366,0 chrXVI 231131 . T C 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.188;DP=122;Dels=0.00;FS=2.850;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.119;QD=21.51;ReadPosRankSum=2.369;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2657,300,0 chrXVI 231179 . T G 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.586;QD=21.53;ReadPosRankSum=1.707;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3026,354,0 chrXVI 231327 . A G 3909.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=16.1737;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.41;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3909,444,0 chrXVI 231457 . A G 4336.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=182;Dels=0.00;FS=3.034;HaplotypeScore=6.5374;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.074;QD=23.82;ReadPosRankSum=2.396;SB=-2.303e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:4336,483,0 chrXVI 231483 . C T 3942.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.04;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3942,429,0 chrXVI 232109 . G T 3356.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3356,360,0 chrXVI 232287 . T C 2861 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.0791;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.51;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2894,330,0 chrXVI 232382 . A G 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=113;Dels=0.00;FS=6.456;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.338;QD=23.69;ReadPosRankSum=2.384;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2710,303,0 chrXVI 232435 . C T 3314.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=24.19;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3314,357,0 chrXVI 232490 . G A 3226.07 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.63;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3259,351,0 chrXVI 232560 . C T 3913.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.75;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3913,420,0 chrXVI 232568 . T G 3724.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.3645;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.92;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3724,426,0 chrXVI 232653 . G A 4564.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.41;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4564,501,0 chrXVI 232790 . G C 3808.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=14.2697;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=19.83;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,187:192:99:3808,447,0 chrXVI 232961 . T C 3480.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.342;QD=23.36;ReadPosRankSum=1.661;SB=-1.830e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:3480,399,0 chrXVI 233007 . G A 3140 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.97;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3173,351,0 chrXVI 233328 . T C 2769 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.1614;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2802,318,0 chrXVI 233841 . C T 4313.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.51;SB=-2.143e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4313,471,0 chrXVI 234171 . C T 3071 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.48;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3104,342,0 chrXVI 234189 . C A 2794 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.49;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2827,306,0 chrXVI 234417 . G A 2791 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.9801;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=20.67;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2824,312,0 chrXVI 235149 . A G 3064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=147;Dels=0.00;FS=6.671;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-1.608;QD=20.84;ReadPosRankSum=2.416;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:2,144:147:99:3097,363,0 chrXVI 235155 . G A 3282.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.3343;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.59;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3282,354,0 chrXVI 235215 . A G 3293.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.25;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3293,384,0 chrXVI 235371 . C T 3693.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.23;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3693,402,0 chrXVI 235523 . C T 3831.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.50;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3831,423,0 chrXVI 235830 . A C 2899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=2.945;HaplotypeScore=7.9262;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=2.223;QD=20.56;ReadPosRankSum=2.397;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2932,327,0 chrXVI 236868 . A T 4882.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.30;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4882,528,0 chrXVI 237141 . T C 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=161;Dels=0.00;FS=3.556;HaplotypeScore=9.9331;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.334;QD=21.04;ReadPosRankSum=1.711;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3388,378,0 chrXVI 237387 . G A 3306.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3306,363,0 chrXVI 237675 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.8639;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.50;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2704,294,0 chrXVI 237720 . C G 2674 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.73;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2707,315,0 chrXVI 237745 . T C 2836 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=19.83;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2869,327,0 chrXVI 237842 . A G 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=3.157;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-1.480;QD=22.93;ReadPosRankSum=1.686;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3485,393,0 chrXVI 238051 . A G 2482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=-0.125;QD=19.86;ReadPosRankSum=1.704;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2515,282,0 chrXVI 238061 . C A 2412 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=19.93;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2445,264,0 chrXVI 238082 . C T 2387 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=18.36;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2420,264,0 chrXVI 238111 . T C 2435 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.9325;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=17.52;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2468,285,0 chrXVI 238301 . G A 3233.06 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=23.77;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3265,354,0 chrXVI 238322 . A C 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.122;DP=131;Dels=0.00;FS=3.001;HaplotypeScore=6.7753;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=1.154;QD=21.17;ReadPosRankSum=2.168;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2806,330,0 chrXVI 238515 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=23.36;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2836,306,0 chrXVI 238541 . C T 2530 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.19;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2563,276,0 chrXVI 238556 . G A 2398 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.15;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2431,270,0 chrXVI 238578 . C T 2428 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.90;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2461,267,0 chrXVI 238659 . T G 3156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=3.363;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.118;QD=22.23;ReadPosRankSum=1.708;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3189,357,0 chrXVI 238781 . T C 2798 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=23.12;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2831,321,0 chrXVI 238845 . T C 2811 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.04;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2844,327,0 chrXVI 238991 . A G 1417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-1.463;QD=18.89;ReadPosRankSum=2.384;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1450,168,0 chrXVI 239005 . C T 1694 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.44;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1727,186,0 chrXVI 239467 . T C 2702 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.79;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2735,306,0 chrXVI 239629 . A T 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.6550;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.690;QD=22.03;ReadPosRankSum=1.570;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2765,303,0 chrXVI 239668 . C T 2791 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.26;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2824,303,0 chrXVI 239686 . T C 2978 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.56;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3011,342,0 chrXVI 240133 . C G 2992 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.94;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3025,339,0 chrXVI 240153 . T G 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.352;QD=23.46;ReadPosRankSum=1.644;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2801,315,0 chrXVI 240215 . G A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=24.07;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3563,384,0 chrXVI 240274 . A G 4046.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=178;Dels=0.01;FS=4.155;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-1.419;QD=22.73;ReadPosRankSum=1.693;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:4046,450,0 chrXVI 240293 . A C 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=178;Dels=0.00;FS=3.931;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-0.448;QD=20.34;ReadPosRankSum=1.713;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3620,408,0 chrXVI 240303 . C T 3423.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.67;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3423,378,0 chrXVI 240445 . C T 4210.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=22.28;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4210,459,0 chrXVI 240469 . T C 3931.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=20.37;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:3931,444,0 chrXVI 240478 . G A 4061.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=21.37;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4061,435,0 chrXVI 240573 . C T 3945.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.3524;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.16;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3945,426,0 chrXVI 240601 . T C 3998.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=181;Dels=0.00;FS=6.966;HaplotypeScore=10.3459;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.252;QD=22.09;ReadPosRankSum=2.395;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3998,459,0 chrXVI 240681 . C G 3037 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.7856;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=19.85;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3070,354,0 chrXVI 240937 . T C 3641.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=3.754;HaplotypeScore=9.0449;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.973;QD=20.34;ReadPosRankSum=1.674;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:1,177:179:99:3641,411,0 chrXVI 240946 . A G 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=173;Dels=0.00;FS=5.583;HaplotypeScore=3.4694;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-0.343;QD=19.76;ReadPosRankSum=2.750;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:3,170:173:99:3418,393,0 chrXVI 241053 . G C 3167 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.2444;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.99;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,140:144:99:3200,366,0 chrXVI 241174 . A C 3939.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.776;DP=175;Dels=0.00;FS=11.679;HaplotypeScore=15.9583;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.178;QD=22.51;ReadPosRankSum=2.937;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:3939,444,0 chrXVI 241467 . C T 4161.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=22.1498;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.67;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,188:192:99:4161,462,0 chrXVI 241547 . C T 3996.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=22.58;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:0,175:177:99:3996,432,0 chrXVI 241650 . T C 3612.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=165;Dels=0.02;FS=4.287;HaplotypeScore=53.7842;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.097;QD=21.89;ReadPosRankSum=1.711;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3612,414,0 chrXVI 241678 . T C 3707.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.31;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3707,414,0 chrXVI 241702 . A G 3317.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.4256;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.480;QD=21.97;ReadPosRankSum=1.319;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3317,369,0 chrXVI 242099 . A G 5142.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=244;Dels=0.00;FS=2.834;HaplotypeScore=15.1856;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.015;QD=21.07;ReadPosRankSum=2.389;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:2,242:244:99:5142,608,0 chrXVI 242227 . G A 6455.01 PASS AC=2;AF=1.00;AN=2;DP=272;Dels=0.00;FS=0.000;HaplotypeScore=18.3348;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.73;SB=-2.922e+03 GT:AD:DP:GQ:PL 1/1:0,269:272:99:6455,708,0 chrXVI 242449 . A G 7618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=338;Dels=0.00;FS=3.023;HaplotypeScore=17.2766;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.008;QD=22.54;ReadPosRankSum=2.413;SB=-4.055e+03 GT:AD:DP:GQ:PL 1/1:2,335:338:99:7618,887,0 chrXVI 242716 . A T 4499.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.705;DP=205;Dels=0.00;FS=5.969;HaplotypeScore=12.2991;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.555;QD=21.95;ReadPosRankSum=2.875;SB=-2.343e+03 GT:AD:DP:GQ:PL 1/1:3,202:205:99:4499,495,0 chrXVI 242761 . G A 4137.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.86;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4137,450,0 chrXVI 242816 . C T 2699 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=14.2619;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2732,297,0 chrXVI 243021 . A G 2046 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.67;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2079,237,0 chrXVI 244301 . G A 545 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:63:578,63,0 chrXVI 244502 . A G 1982 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2015,225,0 chrXVI 244633 . A G 2784 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2817,312,0 chrXVI 244785 . G A 2961 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.31;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2994,333,0 chrXVI 244939 . T C 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.2321;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-0.408;QD=19.90;ReadPosRankSum=1.707;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2759,318,0 chrXVI 244964 . C T 3058 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.5152;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.38;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3091,345,0 chrXVI 245159 . T C 4061.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.95;SB=-2.197e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4061,462,0 chrXVI 245345 . G A 4014.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.42;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4014,447,0 chrXVI 245420 . C T 3195 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3228,348,0 chrXVI 245496 . C T 3087 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.79;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3120,336,0 chrXVI 245982 . A T 3887.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.24;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3887,417,0 chrXVI 246320 . C T 3713.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=23.95;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3713,402,0 chrXVI 246480 . G A 3683.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=25.40;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3683,396,0 chrXVI 246509 . G A 3113 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=24.71;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3146,342,0 chrXVI 246539 . A T 2595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=121;Dels=0.00;FS=3.032;HaplotypeScore=6.4526;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=0.518;QD=21.45;ReadPosRankSum=2.368;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2628,285,0 chrXVI 246558 . C T 2867 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.56;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2900,315,0 chrXVI 246640 . G A 2762 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.77;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2795,309,0 chrXVI 246945 . T C 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=120;Dels=0.00;FS=3.046;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.338;QD=19.63;ReadPosRankSum=2.327;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2389,267,0 chrXVI 246950 . G C 2300 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=19.49;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2333,264,0 chrXVI 247112 . A C 3780.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.63;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3780,441,0 chrXVI 247153 . C A 3855.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.94;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3855,417,0 chrXVI 247661 . C T 3803.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3803,426,0 chrXVI 247847 . A G 3186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.4484;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.124;QD=21.53;ReadPosRankSum=1.685;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3219,369,0 chrXVI 247931 . G A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.89;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3480,375,0 chrXVI 248123 . C T 4139.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.34;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,189:194:99:4139,450,0 chrXVI 249056 . G A 3085 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.85;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3118,336,0 chrXVI 249821 . A G 4042.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4042,456,0 chrXVI 250784 . G A 1733 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=7.5041;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=25.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1766,192,0 chrXVI 251053 . C T 3205.99 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.1550;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.81;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3239,357,0 chrXVI 251068 . T C 2919 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.46;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2952,327,0 chrXVI 251210 . A T 4181.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.10;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4181,462,0 chrXVI 251236 . T A 4486.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.4481;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.88;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4486,483,0 chrXVI 251405 . C T 3878.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.19;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:3878,432,0 chrXVI 251559 . C T 4125.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=15.1860;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.66;SB=-2.210e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4125,453,0 chrXVI 251641 . G A 3587.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.87;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3587,387,0 chrXVI 251738 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.54;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3448,384,0 chrXVI 252004 . A G 2964 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=23.34;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2997,339,0 chrXVI 252117 . G A 4158.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=25.05;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4158,444,0 chrXVI 252259 . A T 67.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;DP=180;Dels=0.00;FS=4.027;HaplotypeScore=52.4117;MLEAC=1;MLEAF=0.500;MQ=38.89;MQ0=0;MQRankSum=-4.604;QD=0.37;ReadPosRankSum=-6.940;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:154,26:180:97:97,0,1545 chrXVI 252262 . T A 1204.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.113;DP=192;Dels=0.01;FS=4.633;HaplotypeScore=66.5449;MLEAC=1;MLEAF=0.500;MQ=36.97;MQ0=0;MQRankSum=2.799;QD=6.27;ReadPosRankSum=7.362;SB=-1.359e+03 GT:AD:DP:GQ:PL 0/1:57,134:191:99:1234,0,291 chrXVI 252265 . A T 1141.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.454;DP=192;Dels=0.00;FS=0.566;HaplotypeScore=53.0895;MLEAC=1;MLEAF=0.500;MQ=35.50;MQ0=0;MQRankSum=1.271;QD=5.94;ReadPosRankSum=7.366;SB=-1.323e+03 GT:AD:DP:GQ:PL 0/1:65,127:192:99:1171,0,411 chrXVI 252271 . T A 2110 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.877;DP=186;Dels=0.02;FS=14.976;HaplotypeScore=52.0817;MLEAC=2;MLEAF=1.00;MQ=33.86;MQ0=0;MQRankSum=-3.154;QD=11.34;ReadPosRankSum=1.556;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:6,177:183:99:2143,246,0 chrXVI 252274 . T A 1127.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;DP=186;Dels=0.00;FS=1.172;HaplotypeScore=86.8668;MLEAC=1;MLEAF=0.500;MQ=33.11;MQ0=0;MQRankSum=2.568;QD=6.06;ReadPosRankSum=6.062;SB=-1.222e+03 GT:AD:DP:GQ:PL 0/1:70,116:186:99:1157,0,482 chrXVI 252280 . T A 572.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;DP=194;Dels=0.00;FS=7.290;HaplotypeScore=148.0034;MLEAC=1;MLEAF=0.500;MQ=31.98;MQ0=0;MQRankSum=-2.096;QD=2.95;ReadPosRankSum=-2.261;SB=-5.170e+02 GT:AD:DP:GQ:PL 0/1:117,77:194:99:602,0,1139 chrXVI 252283 . T A 618.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DP=188;Dels=0.00;FS=1.802;HaplotypeScore=132.0481;MLEAC=1;MLEAF=0.500;MQ=30.53;MQ0=0;MQRankSum=-2.142;QD=3.29;ReadPosRankSum=-1.997;SB=-5.970e+02 GT:AD:DP:GQ:PL 0/1:105,83:188:99:648,0,914 chrXVI 252362 . G A 2031 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=12.38;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:2064,228,0 chrXVI 252372 . T A 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=0.517;QD=12.88;ReadPosRankSum=1.590;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:2262,249,0 chrXVI 252490 . A G 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;MQRankSum=1.035;QD=18.55;ReadPosRankSum=1.712;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:3260,395,0 chrXVI 252501 . A G 3315.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;QD=19.39;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3315,389,0 chrXVI 252511 . A G 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=172;Dels=0.00;FS=6.043;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.51;MQ0=0;MQRankSum=-0.677;QD=18.63;ReadPosRankSum=2.912;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:3,168:172:99:3238,386,0 chrXVI 252550 . T C 3623.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=18.30;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3623,423,0 chrXVI 252578 . T C 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=3.010;HaplotypeScore=9.9257;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=-0.324;QD=20.47;ReadPosRankSum=1.713;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3725,420,0 chrXVI 252618 . C T 4493.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=10.4156;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.71;SB=-2.346e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4493,489,0 chrXVI 252946 . G T 4205.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.2064;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-2.340e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4205,462,0 chrXVI 252991 . A G 3698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.9982;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.222;QD=22.69;ReadPosRankSum=1.711;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3698,420,0 chrXVI 253090 . G A 4313.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.35;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4313,468,0 chrXVI 253126 . A G 3531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.4406;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.367;QD=20.65;ReadPosRankSum=1.692;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3531,411,0 chrXVI 253207 . A G 3073 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=15.0574;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.49;SB=-1.836e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3106,348,0 chrXVI 253285 . T A 2209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.7989;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.171;QD=18.72;ReadPosRankSum=1.453;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2242,255,0 chrXVI 253286 . T C 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.154;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.5875;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=1.609;QD=19.41;ReadPosRankSum=0.892;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2362,267,0 chrXVI 253297 . G A 2277 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.3564;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.46;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2310,249,0 chrXVI 253375 . C T 2955 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2988,330,0 chrXVI 253678 . A G 4335.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=15.1587;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.35;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,200:203:99:4335,498,0 chrXVI 253842 . T C 3584.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.46;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3584,423,0 chrXVI 253892 . T C 4383.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.59;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:0,192:194:99:4383,492,0 chrXVI 254020 . C T 3462.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.93;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3462,375,0 chrXVI 254053 . G A 2966 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.47;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2999,327,0 chrXVI 254101 . T C 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.535;QD=19.96;ReadPosRankSum=2.021;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:3,142:146:99:2947,329,0 chrXVI 254117 . G A 3038 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.24;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3071,339,0 chrXVI 254474 . G A 2473 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.90;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2506,276,0 chrXVI 254494 . A C 2741 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=23.63;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2774,306,0 chrXVI 254541 . T C 2598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=121;Dels=0.00;FS=3.979;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=0.433;QD=21.47;ReadPosRankSum=1.703;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2631,303,0 chrXVI 254741 . C T 2053 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=21.84;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2086,228,0 chrXVI 254772 . A T 1226 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=14.60;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1259,138,0 chrXVI 254778 . G A 1102 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=13.77;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1135,123,0 chrXVI 254813 . G A 1771 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=18.07;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1804,204,0 chrXVI 255611 . C T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3306,360,0 chrXVI 255696 . A G 2850 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.59;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2883,324,0 chrXVI 255726 . G A 3314.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.38;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3314,360,0 chrXVI 256359 . T G 2445 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.23;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2478,285,0 chrXVI 256420 . T C 2093 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.72;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2126,240,0 chrXVI 257148 . C T 4214.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.1756;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.79;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:4214,462,0 chrXVI 257774 . G A 5024.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=10.9376;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.73;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5024,543,0 chrXVI 257972 . C T 7974.01 PASS AC=2;AF=1.00;AN=2;DP=357;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.34;SB=-4.213e+03 GT:AD:DP:GQ:PL 1/1:0,357:357:99:7974,865,0 chrXVI 258236 . C T 7714.01 PASS AC=2;AF=1.00;AN=2;DP=355;Dels=0.00;FS=0.000;HaplotypeScore=15.5753;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.73;SB=-4.136e+03 GT:AD:DP:GQ:PL 1/1:0,355:355:99:7714,855,0 chrXVI 258271 . T C 6138.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=307;Dels=0.00;FS=7.658;HaplotypeScore=5.8943;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=0.670;QD=19.99;ReadPosRankSum=2.433;SB=-3.257e+03 GT:AD:DP:GQ:PL 1/1:2,304:307:99:6138,690,0 chrXVI 258272 . A T 6263.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=5.1056;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=20.40;SB=-3.368e+03 GT:AD:DP:GQ:PL 1/1:0,307:307:99:6263,687,0 chrXVI 258329 . G A 4793.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=16.36;SB=-3.028e+03 GT:AD:DP:GQ:PL 1/1:0,291:293:99:4793,525,0 chrXVI 258332 . A T 4770.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=0.163;QD=16.56;ReadPosRankSum=1.696;SB=-3.105e+03 GT:AD:DP:GQ:PL 1/1:1,286:287:99:4770,525,0 chrXVI 258364 . C T 5027.01 PASS AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=11.0005;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=16.70;SB=-3.469e+03 GT:AD:DP:GQ:PL 1/1:0,300:301:99:5027,546,0 chrXVI 258374 . C T 4682.01 PASS AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=10.8489;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=15.87;SB=-3.410e+03 GT:AD:DP:GQ:PL 1/1:0,295:295:99:4682,507,0 chrXVI 258521 . T C 4814.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.1350;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=23.03;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4814,531,0 chrXVI 258671 . A G 4555.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=13.2502;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.55;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,200:202:99:4555,507,0 chrXVI 258984 . C T 4336.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=11.4488;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.44;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4336,468,0 chrXVI 259360 . T C 3208 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.53;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,145:149:99:3241,366,0 chrXVI 259417 . G T 2261 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.13;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2294,255,0 chrXVI 259430 . C G 1768 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=18.42;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1801,210,0 chrXVI 259921 . T C 5885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.555;DP=257;Dels=0.00;FS=11.352;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.487;QD=22.90;ReadPosRankSum=3.745;SB=-2.738e+03 GT:AD:DP:GQ:PL 1/1:5,250:257:99:5885,666,0 chrXVI 259987 . C A 7569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=315;Dels=0.00;FS=0.000;HaplotypeScore=18.2590;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.414;QD=24.03;ReadPosRankSum=1.353;SB=-3.355e+03 GT:AD:DP:GQ:PL 1/1:2,311:315:99:7569,826,0 chrXVI 260089 . G A 6038.01 PASS AC=2;AF=1.00;AN=2;DP=269;Dels=0.00;FS=0.000;HaplotypeScore=11.0479;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.45;SB=-3.480e+03 GT:AD:DP:GQ:PL 1/1:0,269:269:99:6038,657,0 chrXVI 260252 . C T 5769.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=22.7212;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.61;SB=-3.097e+03 GT:AD:DP:GQ:PL 1/1:0,265:267:99:5769,625,0 chrXVI 260560 . G C 3555.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=19.4621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3555,420,0 chrXVI 261034 . T A 1661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;MQRankSum=0.622;QD=21.03;ReadPosRankSum=1.688;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1694,183,0 chrXVI 261137 . C G 1740 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.51;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1773,201,0 chrXVI 261329 . T C 2486 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.81;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2519,288,0 chrXVI 261357 . T A 2166 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.88;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2199,243,0 chrXVI 261568 . T C 1741 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.21;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1774,207,0 chrXVI 261631 . A C 1713 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.39;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1746,195,0 chrXVI 261868 . C T 3424.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3424,375,0 chrXVI 261906 . C T 3512.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3512,384,0 chrXVI 262065 . A G 3988.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.93;SB=-1.979e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3988,441,0 chrXVI 262228 . G A 4468.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.89;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4468,486,0 chrXVI 262452 . T G 3374.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.1914;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.96;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3374,390,0 chrXVI 262502 . T G 3129 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.35;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:3162,366,0 chrXVI 262609 . T C 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.6790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=23.12;ReadPosRankSum=1.708;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3376,381,0 chrXVI 262681 . A G 3157 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3190,375,0 chrXVI 262966 . A G 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=190;Dels=0.00;FS=4.416;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.400;QD=22.32;ReadPosRankSum=1.714;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4241,498,0 chrXVI 263263 . A G 4100.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.188;DP=200;Dels=0.00;FS=13.946;HaplotypeScore=13.7160;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.399;QD=20.50;ReadPosRankSum=3.328;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:4,195:200:99:4100,462,0 chrXVI 263290 . C T 3870.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.17;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3870,414,0 chrXVI 263592 . C G 4369.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.31;SB=-2.375e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4369,504,0 chrXVI 263635 . C A 5074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=224;Dels=0.00;FS=3.551;HaplotypeScore=9.7056;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.420;QD=22.65;ReadPosRankSum=-0.047;SB=-2.556e+03 GT:AD:DP:GQ:PL 1/1:1,221:224:99:5074,531,0 chrXVI 263710 . A G 3950.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.32;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3950,444,0 chrXVI 263733 . A T 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.811;QD=21.54;ReadPosRankSum=1.710;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3404,363,0 chrXVI 263788 . G A 3112 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.0773;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=20.21;SB=-1.974e+03 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3145,342,0 chrXVI 263800 . G A 3054 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=18.18;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3087,339,0 chrXVI 263823 . G A 3377.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.19;SB=-2.391e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3377,366,0 chrXVI 263857 . A G 3199 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=17.39;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3232,378,0 chrXVI 264124 . A G 2967 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.66;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3000,333,0 chrXVI 264248 . T A 3548.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.497;QD=21.77;ReadPosRankSum=1.711;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3548,393,0 chrXVI 264333 . A T 3586.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.2651;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.44;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3586,390,0 chrXVI 264524 . A C 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;MQRankSum=-0.155;QD=16.79;ReadPosRankSum=1.688;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:1,155:159:99:2703,306,0 chrXVI 264525 . C A 2773 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=17.44;SB=-2.108e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:2806,306,0 chrXVI 264572 . A G 2813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=148;Dels=0.00;FS=3.314;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.772;QD=19.01;ReadPosRankSum=1.709;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2846,321,0 chrXVI 264609 . T C 3887.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=3.091;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.924;QD=23.85;ReadPosRankSum=1.711;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3887,435,0 chrXVI 264688 . C T 2834 SnpCluster AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.1434;MLEAC=2;MLEAF=1.00;MQ=41.69;MQ0=0;QD=16.29;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2867,309,0 chrXVI 264689 . C T 2793 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.1434;MLEAC=2;MLEAF=1.00;MQ=41.57;MQ0=0;QD=16.14;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,169:173:99:2826,309,0 chrXVI 264690 . A G 2667 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=168;Dels=0.00;FS=6.312;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.89;MQ0=0;MQRankSum=-1.111;QD=15.87;ReadPosRankSum=2.376;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:2,166:168:99:2700,309,0 chrXVI 264705 . G A 2695 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=14.97;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2728,294,0 chrXVI 264726 . T C 2979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=0;MQRankSum=-1.252;QD=14.75;ReadPosRankSum=1.715;SB=-2.559e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:3012,336,0 chrXVI 264796 . G A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.3998;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.21;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3372,378,0 chrXVI 264839 . A C 2655 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=15.80;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2688,300,0 chrXVI 264882 . T A 2721 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=17.33;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2754,297,0 chrXVI 264964 . C T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=24.66;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3379,366,0 chrXVI 265144 . T C 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.482;QD=20.11;ReadPosRankSum=1.706;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2708,315,0 chrXVI 265153 . C T 2724 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=20.79;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2757,297,0 chrXVI 265513 . G A 2506 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2539,279,0 chrXVI 265753 . T C 3634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=164;Dels=0.00;FS=2.965;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.535;QD=22.16;ReadPosRankSum=2.419;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:3634,408,0 chrXVI 266023 . C T 3604.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.52;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3604,393,0 chrXVI 267098 . T G 4947.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.3041;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.08;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:4947,564,0 chrXVI 267298 . C T 4098.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.27;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:4098,444,0 chrXVI 267461 . G A 2988 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.75;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3021,327,0 chrXVI 267476 . T C 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=141;Dels=0.00;FS=3.042;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=0.448;QD=18.67;ReadPosRankSum=2.415;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:2665,303,0 chrXVI 267512 . G C 3025 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=18.79;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3058,351,0 chrXVI 267596 . G T 4198.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.3528;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.19;SB=-2.325e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4198,462,0 chrXVI 267657 . A T 4302.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=16.5559;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.51;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4302,471,0 chrXVI 267830 . T C 3605.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.25;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3605,405,0 chrXVI 268117 . G A 3032 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.06;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3065,327,0 chrXVI 268208 . C T 3143 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3176,345,0 chrXVI 268907 . G A 4647.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.1397;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.12;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4647,499,0 chrXVI 269012 . C T 3392.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=15.1282;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.07;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3392,369,0 chrXVI 270158 . C T 2586 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.05;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2619,285,0 chrXVI 270592 . G T 4608.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=9.6858;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.16;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4608,510,0 chrXVI 270630 . T C 4163.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.01;FS=0.000;HaplotypeScore=11.4410;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.52;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4163,471,0 chrXVI 270689 . C T 4322.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.1426;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.56;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4322,474,0 chrXVI 271083 . T A 1931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.795;QD=22.72;ReadPosRankSum=1.691;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1964,219,0 chrXVI 271095 . C T 2268 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.91;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2301,252,0 chrXVI 271127 . G T 2587 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=23.52;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2620,285,0 chrXVI 271149 . A G 1621 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.52;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1654,186,0 chrXVI 271460 . C T 3637.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.4759;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.17;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3637,393,0 chrXVI 271555 . G A 3543.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=23.78;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3543,384,0 chrXVI 271666 . C T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.3224;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.37;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3389,369,0 chrXVI 272032 . A G 4149.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=200;Dels=0.00;FS=5.435;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-0.312;QD=20.75;ReadPosRankSum=2.965;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:3,197:200:99:4149,462,0 chrXVI 272038 . C T 3974.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.70;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:3974,438,0 chrXVI 272074 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=181;Dels=0.00;FS=10.025;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-0.316;QD=18.08;ReadPosRankSum=2.938;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:3,175:181:99:3272,378,0 chrXVI 272093 . C G 3704.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.8152;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.13;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3704,420,0 chrXVI 272485 . G A 3540.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3540,384,0 chrXVI 273202 . A G 2840 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.52;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2873,321,0 chrXVI 273221 . A T 3078 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.14;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3111,333,0 chrXVI 273874 . T C 1993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.300;DP=101;Dels=0.00;FS=2.415;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.566;QD=19.73;ReadPosRankSum=3.369;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:4,97:101:99:2026,225,0 chrXVI 273875 . T C 1960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-1.526;QD=19.41;ReadPosRankSum=1.664;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1993,222,0 chrXVI 274025 . T C 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.310;QD=21.97;ReadPosRankSum=1.672;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2560,291,0 chrXVI 274370 . T C 4098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.027;QD=24.54;ReadPosRankSum=1.691;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4098,459,0 chrXVI 274407 . G A 3724.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.9385;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.42;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3724,402,0 chrXVI 274818 . C T 3684.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.1493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3684,399,0 chrXVI 275039 . C T 4241.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=13.9632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-2.208e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4241,477,0 chrXVI 275384 . G A 3067 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.15;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3100,336,0 chrXVI 275387 . G A 2940 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.70;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2973,321,0 chrXVI 275615 . G C 4432.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.8322;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=24.35;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,179:182:99:4432,495,0 chrXVI 275804 . A T 3178 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=22.07;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3211,348,0 chrXVI 275818 . G A 2974 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=20.37;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3007,327,0 chrXVI 275836 . C A 2884 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.85;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2917,312,0 chrXVI 275908 . A T 2340 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=20.89;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2373,258,0 chrXVI 275911 . T C 2283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=114;Dels=0.00;FS=6.533;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.550;QD=20.03;ReadPosRankSum=2.407;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2316,261,0 chrXVI 276005 . G A 1814 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.60;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1847,198,0 chrXVI 276020 . A G 1556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=76;Dels=0.00;FS=7.594;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-1.996;QD=20.47;ReadPosRankSum=2.190;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1589,177,0 chrXVI 276134 . G A 2961 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.95;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2994,327,0 chrXVI 276934 . G A 3328.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.12;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3328,363,0 chrXVI 277322 . T C 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.883;DP=117;Dels=0.00;FS=10.804;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.156;QD=21.17;ReadPosRankSum=4.083;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:6,110:117:99:2510,285,0 chrXVI 277547 . A G 2810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.052;QD=21.29;ReadPosRankSum=1.706;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2843,327,0 chrXVI 277562 . G T 3069 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7163;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.77;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3102,336,0 chrXVI 277807 . G A 2623 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.04;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2656,288,0 chrXVI 278810 . G A 3474.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.99;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3474,378,0 chrXVI 278872 . T C 4277.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=4.064;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.139;QD=23.50;ReadPosRankSum=-1.177;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:4277,474,0 chrXVI 279843 . C T 2161 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;QD=22.51;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2194,237,0 chrXVI 280021 . C T 4397.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=18.0302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4397,486,0 chrXVI 280422 . A G 2691 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2724,306,0 chrXVI 280470 . A G 2616 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.75;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2649,294,0 chrXVI 280549 . A G 2811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=3.369;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.732;QD=22.31;ReadPosRankSum=1.705;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2844,330,0 chrXVI 281895 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=170;Dels=0.00;FS=3.031;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.715;QD=19.00;ReadPosRankSum=2.377;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3263,372,0 chrXVI 281902 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=18.40;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2996,336,0 chrXVI 282326 . C G 2188 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:2221,252,0 chrXVI 283162 . A C 1323 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1356,156,0 chrXVI 283556 . C T 3096 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.57;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3129,339,0 chrXVI 283658 . C T 2961 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.46;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2994,333,0 chrXVI 283933 . C T 4885.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=6.8668;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.70;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:4885,528,0 chrXVI 283936 . T C 4717.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=6.0781;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.121;QD=19.33;ReadPosRankSum=1.333;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:1,242:244:99:4717,537,0 chrXVI 284100 . C T 6140.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=24.1755;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.54;SB=-2.768e+03 GT:AD:DP:GQ:PL 1/1:0,283:285:99:6140,666,0 chrXVI 284142 . A T 6152.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=271;Dels=0.00;FS=6.271;HaplotypeScore=18.8189;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.634;QD=22.70;ReadPosRankSum=2.375;SB=-3.314e+03 GT:AD:DP:GQ:PL 1/1:2,269:271:99:6152,669,0 chrXVI 284388 . T C 4694.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=10.6625;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=19.48;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,238:241:99:4694,549,0 chrXVI 284403 . T C 4437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=235;Dels=0.00;FS=13.337;HaplotypeScore=6.5019;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=1.844;QD=18.88;ReadPosRankSum=2.952;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:3,229:235:99:4437,525,0 chrXVI 284476 . T G 4050.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4050,462,0 chrXVI 284591 . C T 3950.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.5503;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.70;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3950,432,0 chrXVI 284661 . A G 4157.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=4.539;HaplotypeScore=9.9113;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=1.351;QD=22.84;ReadPosRankSum=1.694;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4157,474,0 chrXVI 284769 . T C 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=180;Dels=0.00;FS=6.068;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.872;QD=23.06;ReadPosRankSum=2.961;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:4151,471,0 chrXVI 285327 . T C 3701.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.549;QD=22.43;ReadPosRankSum=1.711;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3701,420,0 chrXVI 285375 . T C 2998 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.21;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3031,336,0 chrXVI 285432 . T C 2469 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.24;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2502,297,0 chrXVI 285657 . T C 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.036;QD=22.56;ReadPosRankSum=2.402;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2357,264,0 chrXVI 285865 . C T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.0526;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.48;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,164:168:99:3776,408,0 chrXVI 286017 . G A 3640.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3640,405,0 chrXVI 286165 . G A 3695.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.8927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3695,402,0 chrXVI 286391 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.72;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3235,360,0 chrXVI 286721 . T C 3438.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.62;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3438,390,0 chrXVI 286787 . C T 3930.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.7725;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.12;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3930,426,0 chrXVI 286828 . T A 3897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.439;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.3530;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.645;QD=23.62;ReadPosRankSum=0.544;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:2,163:165:99:3897,404,0 chrXVI 286865 . T A 3864.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=155;Dels=0.00;FS=3.030;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=0.706;QD=24.93;ReadPosRankSum=2.418;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3864,420,0 chrXVI 286890 . G C 3302.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=23.42;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3302,369,0 chrXVI 286906 . A G 2953 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.71;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2986,339,0 chrXVI 286979 . G A 2095 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.95;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2128,237,0 chrXVI 287066 . G A 3703.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=10.0685;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.20;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3703,402,0 chrXVI 287130 . T C 2998 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.1948;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=23.42;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3031,345,0 chrXVI 287349 . C T 3592.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.73;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3592,390,0 chrXVI 287390 . C T 2875 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.4097;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.10;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2908,318,0 chrXVI 287392 . G C 2803 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.02;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2836,321,0 chrXVI 288281 . G A 3482.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2876;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.76;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3482,378,0 chrXVI 288666 . A G 2980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.4644;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.577;QD=22.24;ReadPosRankSum=1.706;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3013,348,0 chrXVI 288762 . T C 4334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=193;Dels=0.00;FS=2.775;HaplotypeScore=14.4731;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.662;QD=22.46;ReadPosRankSum=2.398;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:2,189:193:99:4334,492,0 chrXVI 288903 . G A 3890.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.29;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3890,423,0 chrXVI 289053 . G T 3162 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.08;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3195,348,0 chrXVI 289247 . C T 2523 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.15;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2556,276,0 chrXVI 289277 . C T 2348 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.25;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2381,258,0 chrXVI 289490 . C A 2620 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.19;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2653,291,0 chrXVI 289567 . A G 2849 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2882,321,0 chrXVI 289840 . C T 3665.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3665,399,0 chrXVI 289908 . G T 3860.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.71;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3860,420,0 chrXVI 290164 . C G 3189 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.98;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3222,372,0 chrXVI 290255 . C T 3142 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.80;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3175,345,0 chrXVI 290326 . C T 2629 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.91;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2662,285,0 chrXVI 290454 . T C 3396.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3396,384,0 chrXVI 290800 . A G 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=129;Dels=0.00;FS=6.123;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.430;QD=21.57;ReadPosRankSum=2.868;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2816,318,0 chrXVI 290923 . G A 3662.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3662,399,0 chrXVI 291021 . T G 2285 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.16;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2318,264,0 chrXVI 291046 . G A 2647 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.24;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2680,300,0 chrXVI 291393 . A G 2777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=3.077;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.732;QD=20.88;ReadPosRankSum=1.706;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2810,327,0 chrXVI 291557 . T G 2923 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2956,339,0 chrXVI 292215 . C T 5579.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-2.811e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5579,609,0 chrXVI 292667 . T C 2490 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.17;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2523,282,0 chrXVI 292699 . C G 2741 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.8732;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.43;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2774,312,0 chrXVI 292773 . A G 3601.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3601,402,0 chrXVI 292964 . A G 3008 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.60;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3041,354,0 chrXVI 293051 . G A 4182.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.90;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4182,456,0 chrXVI 293210 . T C 3984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.152;DP=177;Dels=0.00;FS=8.070;HaplotypeScore=14.3395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.710;QD=22.51;ReadPosRankSum=2.298;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:4,172:177:99:3984,468,0 chrXVI 293369 . A G 5342.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=224;Dels=0.00;FS=3.893;HaplotypeScore=9.6750;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.458;QD=23.85;ReadPosRankSum=1.670;SB=-2.203e+03 GT:AD:DP:GQ:PL 1/1:1,222:224:99:5342,594,0 chrXVI 294473 . G A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3312,372,0 chrXVI 294728 . T C 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=3.583;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.492;QD=22.09;ReadPosRankSum=1.668;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3578,420,0 chrXVI 294929 . T C 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.445;QD=24.44;ReadPosRankSum=1.685;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3617,411,0 chrXVI 295127 . C T 3452.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=23.17;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3452,387,0 chrXVI 295177 . G A 3201 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.0650;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.79;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3234,351,0 chrXVI 295187 . A G 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3430;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.035;QD=20.22;ReadPosRankSum=1.616;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3046,339,0 chrXVI 295205 . T C 3526.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=167;Dels=0.00;FS=3.594;HaplotypeScore=5.1312;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-0.840;QD=21.11;ReadPosRankSum=1.296;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3526,402,0 chrXVI 295316 . A G 4083.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=192;Dels=0.00;FS=3.568;HaplotypeScore=16.8130;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.553;QD=21.27;ReadPosRankSum=1.714;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4083,468,0 chrXVI 295493 . T C 4165.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.9515;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.27;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4165,474,0 chrXVI 295562 . C T 4459.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.0747;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.97;SB=-2.337e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:4459,498,0 chrXVI 295831 . C T 4734.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.2602;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=22.12;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4734,543,0 chrXVI 295852 . T C 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=202;Dels=0.00;FS=2.954;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;MQRankSum=-0.690;QD=18.49;ReadPosRankSum=2.425;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:2,199:202:99:3734,446,0 chrXVI 295860 . T G 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;MQRankSum=-1.218;QD=17.61;ReadPosRankSum=1.629;SB=-2.189e+03 GT:AD:DP:GQ:PL 1/1:1,201:202:99:3557,425,0 chrXVI 295874 . T G 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.486;DP=189;Dels=0.00;FS=3.574;HaplotypeScore=3.1771;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;MQRankSum=-1.604;QD=17.35;ReadPosRankSum=-0.522;SB=-2.138e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3279,392,0 chrXVI 295921 . G A 3425.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.7300;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=16.23;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:3425,372,0 chrXVI 295944 . A G 3890.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=17.21;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:3890,438,0 chrXVI 295959 . T C 4028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=247;Dels=0.00;FS=7.538;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;MQRankSum=-0.035;QD=16.31;ReadPosRankSum=2.420;SB=-2.616e+03 GT:AD:DP:GQ:PL 1/1:2,245:247:99:4028,453,0 chrXVI 295997 . C T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=13.8335;MLEAC=2;MLEAF=1.00;MQ=41.68;MQ0=0;QD=15.14;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:3589,405,0 chrXVI 296018 . A C 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=36.40;MQ0=0;MQRankSum=-1.732;QD=14.30;ReadPosRankSum=1.715;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:2950,365,0 chrXVI 296028 . C A 2800 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=35.13;MQ0=0;QD=15.47;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:2833,324,0 chrXVI 296034 . C T 2852 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=35.89;MQ0=0;QD=15.01;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:2885,333,0 chrXVI 296054 . C T 3091 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=0;QD=16.53;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3124,366,0 chrXVI 296144 . A G 3393.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.94;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3393,396,0 chrXVI 296178 . C T 3601.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.6160;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=21.56;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3601,396,0 chrXVI 296330 . C T 6329.01 PASS AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=21.3378;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.18;SB=-2.682e+03 GT:AD:DP:GQ:PL 1/1:0,273:273:99:6329,693,0 chrXVI 296420 . C G 5592.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.73;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,242:246:99:5592,639,0 chrXVI 296498 . C G 6983.01 PASS AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=14.8789;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.45;SB=-3.789e+03 GT:AD:DP:GQ:PL 1/1:0,305:311:99:6983,795,0 chrXVI 296526 . G A 6697.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.93;SB=-3.424e+03 GT:AD:DP:GQ:PL 1/1:0,292:292:99:6697,730,0 chrXVI 297034 . C T 5403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=18.4101;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.520;QD=23.39;ReadPosRankSum=0.537;SB=-2.663e+03 GT:AD:DP:GQ:PL 1/1:1,229:231:99:5403,585,0 chrXVI 297234 . C T 3759.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=14.3970;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=18.80;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:3759,405,0 chrXVI 297484 . T A 3601.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.9323;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.01;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3601,387,0 chrXVI 297634 . T A 4110.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=3.138;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.491;QD=23.76;ReadPosRankSum=1.712;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:4110,441,0 chrXVI 297828 . A G 4635.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=217;Dels=0.00;FS=3.324;HaplotypeScore=23.0359;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.055;QD=21.36;ReadPosRankSum=1.700;SB=-2.312e+03 GT:AD:DP:GQ:PL 1/1:1,214:217:99:4635,525,0 chrXVI 298155 . T C 3678.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.70;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3678,414,0 chrXVI 298280 . T A 2238 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.34;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2271,252,0 chrXVI 298438 . C T 1281 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.87;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1314,138,0 chrXVI 298471 . G T 678 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.83;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,34:36:78:711,78,0 chrXVI 298560 . A G 1154 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=25.09;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1187,132,0 chrXVI 298889 . C A 3642.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=21.42;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3642,396,0 chrXVI 299549 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=149;Dels=0.00;FS=2.936;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.388;QD=22.86;ReadPosRankSum=2.384;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3406,381,0 chrXVI 299678 . G T 2502 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.68;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2535,279,0 chrXVI 299735 . A T 2978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=4.345;HaplotypeScore=8.8266;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-1.687;QD=19.09;ReadPosRankSum=1.710;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3011,336,0 chrXVI 299834 . T C 3275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=14.8935;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.448;QD=22.90;ReadPosRankSum=1.708;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3275,369,0 chrXVI 300071 . C T 4677.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.62;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4677,525,0 chrXVI 300401 . T C 3558.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.93;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3558,411,0 chrXVI 300467 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.70;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3249,354,0 chrXVI 300478 . G C 2644 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=16.42;SB=-1.959e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:2677,312,0 chrXVI 300724 . T C 4272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=193;Dels=0.00;FS=3.079;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.934;QD=22.13;ReadPosRankSum=1.678;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:1,190:193:99:4272,486,0 chrXVI 300941 . T C 5353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=244;Dels=0.00;FS=2.954;HaplotypeScore=19.0283;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.086;QD=21.94;ReadPosRankSum=2.429;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:2,242:244:99:5353,627,0 chrXVI 301121 . G A 4436.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.35;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4436,480,0 chrXVI 301187 . A G 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.0878;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.348;QD=20.65;ReadPosRankSum=2.397;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:2,185:187:99:3861,435,0 chrXVI 301234 . C T 3209.99 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.9757;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.94;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3243,351,0 chrXVI 301260 . T C 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=4.204;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.255;QD=21.16;ReadPosRankSum=1.705;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2762,306,0 chrXVI 301308 . C T 2727 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.54;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2760,300,0 chrXVI 301341 . T C 2858 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.98;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2891,324,0 chrXVI 301444 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.81;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3547,408,0 chrXVI 301525 . G A 3341.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.27;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3341,369,0 chrXVI 301568 . C A 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=163;Dels=0.00;FS=3.468;HaplotypeScore=5.2779;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-1.516;QD=22.09;ReadPosRankSum=1.234;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:1,159:163:99:3600,387,0 chrXVI 301572 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=8.7883;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.12;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3280,378,0 chrXVI 301673 . G A 4687.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.54;SB=-2.392e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4687,510,0 chrXVI 301695 . C G 4397.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.66;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,191:194:99:4397,489,0 chrXVI 301952 . A G 3928.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.218;DP=175;Dels=0.00;FS=8.533;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=2.164;QD=22.45;ReadPosRankSum=3.339;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:4,170:175:99:3928,444,0 chrXVI 302336 . A G 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.617;QD=22.39;ReadPosRankSum=1.585;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2675,300,0 chrXVI 302633 . T C 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=181;Dels=0.00;FS=2.991;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.430;QD=23.22;ReadPosRankSum=2.395;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:4202,477,0 chrXVI 302673 . G A 3769.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=24.16;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3769,405,0 chrXVI 302738 . A G 2314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.599;QD=21.63;ReadPosRankSum=1.635;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2347,267,0 chrXVI 302825 . T A 3331.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=25.62;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3331,363,0 chrXVI 302865 . A G 2411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.217;DP=117;Dels=0.00;FS=2.436;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=1.462;QD=20.61;ReadPosRankSum=3.217;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:4,113:117:99:2444,276,0 chrXVI 302893 . T C 1028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.893;DP=87;Dels=0.05;FS=0.000;HaplotypeScore=25.1203;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=1.122;QD=11.82;ReadPosRankSum=-1.172;SB=-8.158e+02 GT:AD:DP:GQ:PL 1/1:7,76:83:62:1061,62,0 chrXVI 302992 . T A 868 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=31.7872;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=14.00;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:901,105,0 chrXVI 303246 . C G 6589.01 PASS AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=18.9952;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.45;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,279:281:99:6589,782,0 chrXVI 303354 . C T 6542.01 PASS AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.03;SB=-3.760e+03 GT:AD:DP:GQ:PL 1/1:0,297:297:99:6542,717,0 chrXVI 303780 . T C 5224.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.077;QD=23.12;ReadPosRankSum=1.655;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:5224,594,0 chrXVI 303807 . C T 5057.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.1694;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.97;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5057,546,0 chrXVI 304319 . A T 3620.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=24.13;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3620,390,0 chrXVI 304561 . T C 4120.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.247;DP=174;Dels=0.00;FS=8.482;HaplotypeScore=13.9312;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.258;QD=23.68;ReadPosRankSum=3.409;SB=-1.838e+03 GT:AD:DP:GQ:PL 1/1:4,169:174:99:4120,453,0 chrXVI 304635 . C T 3810.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.58;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3810,411,0 chrXVI 304734 . A T 4443.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.999;QD=23.51;ReadPosRankSum=1.714;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4443,480,0 chrXVI 304831 . A G 3679.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.3955;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.58;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3679,408,0 chrXVI 304895 . T C 2747 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.46;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2780,312,0 chrXVI 304957 . T G 2355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=127;Dels=0.00;FS=5.654;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.014;QD=18.54;ReadPosRankSum=1.704;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2388,270,0 chrXVI 304984 . A G 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1389;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.460;QD=20.86;ReadPosRankSum=1.678;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2703,303,0 chrXVI 305273 . G A 2300 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.4739;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,101:105:99:2333,252,0 chrXVI 305812 . C T 4812.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=15.7914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4812,516,0 chrXVI 306198 . A T 2398 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2431,264,0 chrXVI 306302 . T C 2801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=121;Dels=0.00;FS=3.549;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;MQRankSum=1.328;QD=23.15;ReadPosRankSum=1.703;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2834,315,0 chrXVI 306430 . A G 3215.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=136;Dels=0.00;FS=7.598;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.383;QD=23.65;ReadPosRankSum=2.341;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3249,363,0 chrXVI 306698 . A G 2784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=128;Dels=0.00;FS=2.935;HaplotypeScore=16.0427;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.381;QD=21.75;ReadPosRankSum=2.411;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:2,124:128:99:2817,318,0 chrXVI 306860 . T C 3198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=144;Dels=0.00;FS=2.693;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.851;QD=22.21;ReadPosRankSum=2.415;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:2,141:144:99:3231,369,0 chrXVI 307244 . T A 4259.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=196;Dels=0.00;FS=5.192;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.631;QD=21.73;ReadPosRankSum=1.643;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4259,459,0 chrXVI 307685 . C T 3742.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.14;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:0,166:169:99:3742,408,0 chrXVI 307847 . A G 3832.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.77;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3832,447,0 chrXVI 308140 . A G 3685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=3.239;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.244;QD=23.47;ReadPosRankSum=1.665;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3685,414,0 chrXVI 308420 . A G 3282.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=148;Dels=0.00;FS=5.272;HaplotypeScore=3.9631;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.030;QD=22.18;ReadPosRankSum=3.388;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:4,144:148:99:3282,372,0 chrXVI 308487 . A T 2454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.418;QD=20.80;ReadPosRankSum=1.702;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2487,273,0 chrXVI 308554 . T A 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=4.667;HaplotypeScore=4.7980;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-0.239;QD=20.99;ReadPosRankSum=1.676;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2615,288,0 chrXVI 308578 . T G 2300 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.12;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2333,264,0 chrXVI 308669 . G A 1287 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1320,141,0 chrXVI 308781 . G A 1740 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=16.89;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1773,195,0 chrXVI 308785 . G T 1880 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=17.41;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1913,204,0 chrXVI 309089 . G T 4073.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.14;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4073,447,0 chrXVI 309114 . G A 3430.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.3712;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.02;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3430,372,0 chrXVI 309206 . G T 2449 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=14.2630;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=18.01;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2482,273,0 chrXVI 309560 . C T 3148 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.6275;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.85;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3181,345,0 chrXVI 309649 . T C 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=146;Dels=0.00;FS=7.066;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.025;QD=21.23;ReadPosRankSum=2.349;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:3133,357,0 chrXVI 309958 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3406,387,0 chrXVI 310009 . T G 4162.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=188;Dels=0.00;FS=9.269;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.359;QD=22.14;ReadPosRankSum=2.410;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:2,186:188:99:4162,480,0 chrXVI 310045 . G A 3758.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3758,423,0 chrXVI 310159 . C T 4413.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.4718;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.52;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4413,483,0 chrXVI 310795 . G A 4806.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=12.6066;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.77;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4806,525,0 chrXVI 310918 . T C 5093.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=240;Dels=0.00;FS=2.930;HaplotypeScore=17.6099;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.201;QD=21.22;ReadPosRankSum=2.388;SB=-2.524e+03 GT:AD:DP:GQ:PL 1/1:2,236:240:99:5093,567,0 chrXVI 310970 . A C 5523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=247;Dels=0.00;FS=3.763;HaplotypeScore=7.3768;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.898;QD=22.36;ReadPosRankSum=1.718;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:1,244:247:99:5523,615,0 chrXVI 311025 . T C 3787.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=179;Dels=0.00;FS=6.144;HaplotypeScore=16.0975;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=0.545;QD=21.16;ReadPosRankSum=2.408;SB=-2.157e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:3787,438,0 chrXVI 311060 . G A 3218.91 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.12;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3252,354,0 chrXVI 311069 . A G 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=161;Dels=0.00;FS=2.844;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-1.620;QD=19.22;ReadPosRankSum=2.265;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3127,354,0 chrXVI 311427 . G A 2726 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.13;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2759,309,0 chrXVI 311442 . C T 2462 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=19.85;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2495,276,0 chrXVI 311937 . T A 3697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.364;QD=23.40;ReadPosRankSum=1.710;SB=-1.960e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3697,405,0 chrXVI 312405 . T C 4242.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.05;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4242,486,0 chrXVI 312657 . A T 4334.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.69;SB=-2.052e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4334,468,0 chrXVI 312873 . T C 1863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=94;Dels=0.00;FS=15.070;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.406;QD=19.82;ReadPosRankSum=2.397;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1896,222,0 chrXVI 312892 . T A 1636 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.25;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1669,180,0 chrXVI 313045 . A G 2139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=5.971;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;MQRankSum=-1.732;QD=24.59;ReadPosRankSum=1.692;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2172,243,0 chrXVI 313228 . C T 2152 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.89;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2185,240,0 chrXVI 313357 . C T 2353 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.20;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2386,261,0 chrXVI 313377 . G A 2015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.144;QD=20.56;ReadPosRankSum=0.289;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2048,205,0 chrXVI 313494 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2770,303,0 chrXVI 313801 . A G 2756 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.41;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2789,324,0 chrXVI 313832 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=20.73;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2189,237,0 chrXVI 313834 . T C 2023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=107;Dels=0.00;FS=10.055;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=0.066;QD=18.91;ReadPosRankSum=2.934;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:3,104:107:99:2056,234,0 chrXVI 313954 . C G 3525.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.7352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3525,399,0 chrXVI 314083 . C G 2695 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.5318;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.27;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2728,306,0 chrXVI 314302 . A T 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=4.274;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.172;QD=21.64;ReadPosRankSum=1.627;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2175,243,0 chrXVI 314443 . A G 3484.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0042;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.70;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3484,387,0 chrXVI 314479 . C T 3873.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.62;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3873,423,0 chrXVI 315182 . T C 3848.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.9120;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.67;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3848,432,0 chrXVI 315337 . A G 5405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=224;Dels=0.00;FS=3.759;HaplotypeScore=11.3292;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-0.745;QD=24.13;ReadPosRankSum=1.716;SB=-2.387e+03 GT:AD:DP:GQ:PL 1/1:1,220:224:99:5405,600,0 chrXVI 316099 . A G 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=147;Dels=0.00;FS=3.040;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.049;QD=22.78;ReadPosRankSum=1.685;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3349,381,0 chrXVI 316205 . C G 2457 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=13.5220;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2490,282,0 chrXVI 316423 . C T 2675 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2708,288,0 chrXVI 316580 . T C 2760 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,121:126:99:2793,318,0 chrXVI 316765 . G A 3197 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.7205;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=24.40;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3230,354,0 chrXVI 316953 . A G 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=3.871;HaplotypeScore=2.7398;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-0.448;QD=20.34;ReadPosRankSum=1.674;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:1,177:183:99:3723,435,0 chrXVI 316954 . C T 3870.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.9512;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.38;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3870,429,0 chrXVI 317063 . G C 3570.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3570,408,0 chrXVI 317394 . C A 3372.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.63;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3372,369,0 chrXVI 317528 . A G 2084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.085;QD=22.90;ReadPosRankSum=1.656;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2117,237,0 chrXVI 317602 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=23.94;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2403,261,0 chrXVI 317622 . G A 2102 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.85;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2135,234,0 chrXVI 317758 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.17;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3298,354,0 chrXVI 318016 . T C 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=140;Dels=0.00;FS=3.074;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.251;QD=20.02;ReadPosRankSum=1.707;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2836,324,0 chrXVI 318049 . C T 3173 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.2728;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.34;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3206,345,0 chrXVI 318072 . T G 2933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=-1.016;QD=19.55;ReadPosRankSum=1.709;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2966,330,0 chrXVI 318113 . T C 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.0858;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-0.417;QD=21.31;ReadPosRankSum=1.688;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3367,378,0 chrXVI 318145 . G A 3558.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=25.23;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3558,390,0 chrXVI 318169 . G A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=24.50;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3405,372,0 chrXVI 318198 . C T 2619 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=21.47;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2652,288,0 chrXVI 318210 . A C 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=117;Dels=0.00;FS=2.904;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=0.567;QD=20.29;ReadPosRankSum=2.386;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:2,113:117:99:2407,276,0 chrXVI 318241 . T C 2394 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=19.46;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2427,270,0 chrXVI 318253 . C A 2431 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=19.60;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2464,270,0 chrXVI 318410 . C T 3157 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=24.10;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3190,345,0 chrXVI 318508 . G A 3510.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.72;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3510,378,0 chrXVI 318995 . G A 3315.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.7056;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3315,363,0 chrXVI 319562 . T C 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=3.795;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.132;QD=19.67;ReadPosRankSum=1.705;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2531,297,0 chrXVI 320279 . T C 3289.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.93;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3289,384,0 chrXVI 320399 . C A 3466.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.58;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3466,384,0 chrXVI 321586 . C T 2576 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=13.9365;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.53;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2609,294,0 chrXVI 321635 . A G 2609 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=14.49;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2642,300,0 chrXVI 321640 . A C 2643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=180;Dels=0.00;FS=2.621;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-0.656;QD=14.68;ReadPosRankSum=2.408;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:2,176:180:99:2676,300,0 chrXVI 321733 . A G 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.6579;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.074;QD=21.98;ReadPosRankSum=1.707;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3110,351,0 chrXVI 321864 . T C 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.160;QD=23.90;ReadPosRankSum=1.683;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3370,378,0 chrXVI 322106 . A G 3536.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=21.6181;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.52;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3536,402,0 chrXVI 322300 . A T 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=147;Dels=0.00;FS=6.603;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;MQRankSum=-0.426;QD=20.93;ReadPosRankSum=2.416;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3109,342,0 chrXVI 322307 . T C 2831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;MQRankSum=-0.729;QD=19.26;ReadPosRankSum=1.708;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:2864,327,0 chrXVI 322313 . A G 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=149;Dels=0.00;FS=3.779;HaplotypeScore=5.0454;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;MQRankSum=-0.047;QD=17.46;ReadPosRankSum=1.662;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2635,300,0 chrXVI 322652 . A G 5078.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=15.6409;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-2.187e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5078,567,0 chrXVI 322778 . A G 3279.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=21.72;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3279,363,0 chrXVI 322786 . A G 3073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-1.684;QD=21.05;ReadPosRankSum=1.708;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3106,354,0 chrXVI 322835 . A G 2697 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.4894;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.43;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2730,303,0 chrXVI 323015 . T C 2613 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=21.07;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2646,303,0 chrXVI 323018 . G A 2810 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=22.85;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2843,303,0 chrXVI 323153 . C T 2285 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.18;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2318,252,0 chrXVI 323168 . A G 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.882;QD=19.95;ReadPosRankSum=1.669;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2267,258,0 chrXVI 323207 . A G 2222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-0.828;QD=19.32;ReadPosRankSum=1.642;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2255,258,0 chrXVI 323469 . A G 2971 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.81;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3004,357,0 chrXVI 323715 . T C 4372.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.54;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4372,498,0 chrXVI 323872 . G T 2514 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=21.86;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2547,276,0 chrXVI 323900 . C G 2508 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.06;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2541,285,0 chrXVI 323982 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=20.25;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1957,213,0 chrXVI 324018 . C T 1670 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=17.40;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1703,189,0 chrXVI 324025 . T G 1586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=3.545;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;MQRankSum=-0.128;QD=16.69;ReadPosRankSum=1.696;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1619,180,0 chrXVI 324160 . G A 2482 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=93.2457;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=23.20;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2515,273,0 chrXVI 324228 . A T 1619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=0.096;QD=22.49;ReadPosRankSum=1.636;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1652,186,0 chrXVI 324298 . A T 3773.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=25.15;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3773,408,0 chrXVI 324348 . G A 2691 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9198;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=21.70;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2724,297,0 chrXVI 324393 . G C 1637 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=14.1681;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=17.05;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1670,192,0 chrXVI 324400 . A G 1612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=96;Dels=0.00;FS=4.546;HaplotypeScore=6.6538;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=-0.774;QD=16.79;ReadPosRankSum=1.695;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:1,93:96:99:1645,189,0 chrXVI 324468 . C T 2573 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.39;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2606,282,0 chrXVI 324533 . C T 2849 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.9350;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.74;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2882,318,0 chrXVI 324664 . T C 3428.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.6242;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.26;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3428,387,0 chrXVI 324897 . A C 4611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=207;Dels=0.00;FS=2.921;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.670;QD=22.28;ReadPosRankSum=2.355;SB=-2.294e+03 GT:AD:DP:GQ:PL 1/1:2,205:207:99:4611,537,0 chrXVI 325353 . G A 3083 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.3371;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,129:133:99:3116,342,0 chrXVI 325464 . C T 3172 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.34;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3205,348,0 chrXVI 325596 . T G 2770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=3.179;HaplotypeScore=7.2386;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-1.362;QD=21.15;ReadPosRankSum=1.706;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2803,327,0 chrXVI 325694 . C T 3089 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.06;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3122,336,0 chrXVI 325797 . A G 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=0.483;QD=21.20;ReadPosRankSum=1.704;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2641,300,0 chrXVI 325815 . A G 2454 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.62;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2487,288,0 chrXVI 325850 . T C 2662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.2507;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.624;QD=21.30;ReadPosRankSum=0.873;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2695,306,0 chrXVI 325896 . G C 2922 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.49;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2955,333,0 chrXVI 326109 . C T 2683 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=20.02;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2716,294,0 chrXVI 326160 . T C 2236 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.28;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2269,255,0 chrXVI 326171 . A G 2352 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=19.44;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2385,267,0 chrXVI 326203 . C T 2677 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=19.98;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2710,297,0 chrXVI 326294 . G T 66.51 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=104.3575;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=0.56;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,114:118:12:99,12,0 chrXVI 326346 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.02;FS=0.000;HaplotypeScore=18.7396;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=17.26;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1966,219,0 chrXVI 326349 . T A 1972 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.0218;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=16.57;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2005,219,0 chrXVI 326402 . T A 2427 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.10;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2460,270,0 chrXVI 326457 . T G 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.469;QD=22.90;ReadPosRankSum=1.694;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2140,246,0 chrXVI 326545 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=20.64;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2345,252,0 chrXVI 326546 . A G 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=-0.186;QD=19.67;ReadPosRankSum=1.701;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2236,252,0 chrXVI 326955 . T G 3938.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.00;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,175:179:99:3938,441,0 chrXVI 327019 . A G 3561.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.1516;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.302;QD=21.85;ReadPosRankSum=1.711;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3561,399,0 chrXVI 327045 . A G 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.451;QD=22.67;ReadPosRankSum=1.685;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3355,369,0 chrXVI 327318 . A G 2375 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.2567;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.84;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2408,270,0 chrXVI 327765 . T C 2916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=128;Dels=0.00;FS=2.769;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.766;QD=22.78;ReadPosRankSum=2.411;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:2,124:128:99:2949,327,0 chrXVI 327863 . G A 2622 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.22;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2655,297,0 chrXVI 327885 . C T 2894 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.79;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2927,315,0 chrXVI 328317 . G A 4387.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4387,474,0 chrXVI 329016 . C A 1809 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.80;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1842,204,0 chrXVI 329027 . A G 1822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=1.168;QD=21.19;ReadPosRankSum=1.692;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1855,213,0 chrXVI 329164 . A G 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4460;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=0.196;QD=23.37;ReadPosRankSum=1.699;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2510,282,0 chrXVI 329389 . C T 2006 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=93.5682;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=19.67;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2039,222,0 chrXVI 329458 . T C 1527 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=17.96;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1560,174,0 chrXVI 329462 . T C 1554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=-0.091;QD=20.18;ReadPosRankSum=1.687;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1587,177,0 chrXVI 329486 . T C 1607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=85;Dels=0.00;FS=6.606;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=-0.710;QD=18.91;ReadPosRankSum=2.218;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1640,180,0 chrXVI 329493 . C G 1493 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=18.90;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1526,171,0 chrXVI 329572 . T G 2099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=3.378;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;MQRankSum=-0.827;QD=18.74;ReadPosRankSum=1.670;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2132,249,0 chrXVI 329584 . C G 2250 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=19.07;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2283,258,0 chrXVI 329594 . C T 2237 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;QD=18.64;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2270,246,0 chrXVI 329617 . G A 2417 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.18;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2450,264,0 chrXVI 329941 . A G 4043.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.2081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.374;QD=22.97;ReadPosRankSum=1.634;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4043,450,0 chrXVI 330238 . A G 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=122;Dels=0.00;FS=2.862;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.433;QD=19.11;ReadPosRankSum=2.409;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2364,279,0 chrXVI 331831 . T C 1744 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.05;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1777,195,0 chrXVI 331845 . C T 1745 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.83;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1778,192,0 chrXVI 331899 . T A 1371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.617;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.678;QD=19.87;ReadPosRankSum=1.632;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1404,153,0 chrXVI 331974 . C T 1261 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.28;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1294,141,0 chrXVI 331976 . G T 1178 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=17.58;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1211,135,0 chrXVI 332036 . C T 1556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.458;DP=102;Dels=0.00;FS=5.130;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;MQRankSum=0.943;QD=15.25;ReadPosRankSum=1.629;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1589,152,0 chrXVI 332039 . T C 1636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.243;DP=107;Dels=0.00;FS=5.099;HaplotypeScore=3.2957;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;MQRankSum=-0.517;QD=15.29;ReadPosRankSum=3.325;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:4,103:107:99:1669,183,0 chrXVI 332197 . T C 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.042;QD=20.91;ReadPosRankSum=1.704;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2668,309,0 chrXVI 332346 . G A 3845.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.88;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3845,414,0 chrXVI 332562 . C T 3650.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.53;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,158:162:99:3650,393,0 chrXVI 332646 . G A 3956.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.41;SB=-1.949e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3956,444,0 chrXVI 332811 . T C 3074 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.4107;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.46;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3107,366,0 chrXVI 332822 . A G 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.7342;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.035;QD=19.02;ReadPosRankSum=1.662;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,148:153:99:2943,330,0 chrXVI 332928 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.28;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2773,300,0 chrXVI 332952 . G A 3024 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.91;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3057,333,0 chrXVI 333067 . G C 4062.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=18.9205;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.20;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,180:183:99:4062,462,0 chrXVI 333103 . T C 3689.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.038;QD=22.63;ReadPosRankSum=2.419;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:3,159:163:99:3689,423,0 chrXVI 333741 . C T 3492.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.5808;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.68;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3492,384,0 chrXVI 333887 . A G 4479.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.1259;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.48;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4479,495,0 chrXVI 334023 . G A 3943.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.19;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3943,426,0 chrXVI 334047 . T C 3926.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=189;Dels=0.00;FS=3.128;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.602;QD=20.77;ReadPosRankSum=1.695;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:3926,459,0 chrXVI 334207 . A G 3952.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=163;Dels=0.00;FS=2.714;HaplotypeScore=7.0697;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.384;QD=24.25;ReadPosRankSum=2.404;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:2,161:163:99:3952,435,0 chrXVI 334494 . A G 2413 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.98;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2446,285,0 chrXVI 334619 . T C 3149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=148;Dels=0.00;FS=3.035;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.881;QD=21.28;ReadPosRankSum=2.349;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3182,369,0 chrXVI 334746 . A G 3791.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=167;Dels=0.00;FS=10.704;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.922;QD=22.70;ReadPosRankSum=2.922;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3791,435,0 chrXVI 335001 . T C 4937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=227;Dels=0.00;FS=2.963;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.559;QD=21.75;ReadPosRankSum=2.384;SB=-2.386e+03 GT:AD:DP:GQ:PL 1/1:2,224:227:99:4937,561,0 chrXVI 335020 . C T 5228.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.44;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:0,231:233:99:5228,567,0 chrXVI 335267 . C T 3330.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=22.20;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3330,357,0 chrXVI 335400 . G A 4467.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.6572;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.39;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4467,492,0 chrXVI 335412 . T C 4316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.260;QD=22.25;ReadPosRankSum=2.424;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4316,489,0 chrXVI 335468 . T C 3709.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=168;Dels=0.00;FS=2.779;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=1.155;QD=22.08;ReadPosRankSum=2.347;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3709,429,0 chrXVI 335498 . A G 3070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=1.053;QD=20.60;ReadPosRankSum=1.662;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3103,351,0 chrXVI 335504 . G A 3297.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.13;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3297,357,0 chrXVI 335609 . C G 4580.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.81;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4580,510,0 chrXVI 335909 . T C 5649.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=15.7800;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.503;QD=22.07;ReadPosRankSum=2.430;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:2,254:256:99:5649,654,0 chrXVI 336337 . A G 4347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.688;QD=20.70;ReadPosRankSum=1.682;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,208:210:99:4347,510,0 chrXVI 336514 . T C 3125 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3158,354,0 chrXVI 336590 . G A 3865.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.0155;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.74;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3865,423,0 chrXVI 336838 . G A 2831 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.47;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2864,312,0 chrXVI 336865 . T A 2589 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.22;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2622,294,0 chrXVI 337072 . G T 2802 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.3322;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.97;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2835,309,0 chrXVI 337146 . T C 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=126;Dels=0.00;FS=2.583;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-0.407;QD=20.75;ReadPosRankSum=2.846;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:3,121:126:99:2647,294,0 chrXVI 337160 . C T 2567 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.04;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2600,282,0 chrXVI 337348 . C G 2959 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.59;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2992,336,0 chrXVI 337437 . C T 1723 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.81;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1756,195,0 chrXVI 337511 . G A 2646 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.69;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2679,291,0 chrXVI 337574 . G A 2616 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.15;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2649,291,0 chrXVI 337666 . C T 4908.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4908,537,0 chrXVI 338006 . A G 2611 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.70;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2644,300,0 chrXVI 338445 . T C 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.0776;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.280;QD=22.99;ReadPosRankSum=2.416;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3334,384,0 chrXVI 338777 . A G 3103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.433;DP=139;Dels=0.00;FS=4.027;HaplotypeScore=10.0491;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.682;QD=22.32;ReadPosRankSum=1.707;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3136,348,0 chrXVI 338828 . T C 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.647;DP=135;Dels=0.00;FS=2.589;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.451;QD=21.99;ReadPosRankSum=2.948;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:3001,345,0 chrXVI 338942 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=20.90;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2186,240,0 chrXVI 338953 . A G 2078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.536;QD=18.23;ReadPosRankSum=1.701;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2111,240,0 chrXVI 339472 . C G 2132 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=24.23;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2165,249,0 chrXVI 339840 . A G 3931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.184;DP=185;Dels=0.00;FS=9.125;HaplotypeScore=15.8659;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.090;QD=21.25;ReadPosRankSum=3.403;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:4,180:185:99:3931,450,0 chrXVI 340194 . T C 4894.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.8816;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.08;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:4894,561,0 chrXVI 340480 . T C 3556.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=22.2293;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.548;QD=21.04;ReadPosRankSum=1.691;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3556,405,0 chrXVI 340525 . A G 3785.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.3857;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.40;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3785,420,0 chrXVI 340795 . G A 4499.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.56;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4499,501,0 chrXVI 340828 . T C 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.01;FS=4.027;HaplotypeScore=5.2725;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=0.952;QD=20.37;ReadPosRankSum=1.656;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3727,438,0 chrXVI 340831 . G T 4008.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.4291;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=0.799;QD=22.02;ReadPosRankSum=1.675;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4008,432,0 chrXVI 341278 . T C 3829.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=13.4798;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.652;QD=22.39;ReadPosRankSum=1.671;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3829,441,0 chrXVI 341647 . G A 4910.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.0197;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.43;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4910,528,0 chrXVI 341700 . C T 4867.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.0868;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.43;SB=-2.001e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:4867,540,0 chrXVI 341746 . T A 5057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.968;DP=218;Dels=0.00;FS=5.434;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.793;QD=23.20;ReadPosRankSum=2.913;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:3,215:218:99:5057,549,0 chrXVI 341844 . G A 4955.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.5518;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:4955,537,0 chrXVI 342016 . C T 4187.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=13.2988;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.92;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4187,450,0 chrXVI 342269 . C T 3134 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.6558;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.32;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3167,339,0 chrXVI 342372 . T C 3375.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.80;SB=-1.735e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3375,381,0 chrXVI 342600 . A G 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.042;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.433;QD=23.02;ReadPosRankSum=1.632;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3233,357,0 chrXVI 342661 . A G 3189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.800;QD=21.84;ReadPosRankSum=1.684;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3222,363,0 chrXVI 342688 . G A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.24;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3347,369,0 chrXVI 342745 . G A 3652.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.68;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3652,399,0 chrXVI 343066 . C T 3545.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3545,393,0 chrXVI 343255 . A T 4129.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.3905;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.87;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4129,450,0 chrXVI 343628 . C T 2832 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2865,309,0 chrXVI 344113 . C T 2458 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=22.76;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2491,276,0 chrXVI 344125 . T C 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-1.732;QD=20.98;ReadPosRankSum=1.643;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2467,285,0 chrXVI 344324 . T C 3143 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.46;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3176,348,0 chrXVI 344589 . C T 2675 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.88;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2708,297,0 chrXVI 344690 . C T 3348.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.09;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3348,366,0 chrXVI 344717 . G A 3443.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.58;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3443,369,0 chrXVI 344783 . G A 2923 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2956,324,0 chrXVI 345115 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2171,234,0 chrXVI 345189 . C A 3763.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.59;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,150:153:99:3763,414,0 chrXVI 346010 . T C 3995.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.1638;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.64;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3995,447,0 chrXVI 346094 . A T 3740.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=174;Dels=0.00;FS=8.022;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.405;QD=21.49;ReadPosRankSum=2.251;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3740,420,0 chrXVI 346505 . A G 2297 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=17.81;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2330,270,0 chrXVI 346506 . C A 2403 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=18.77;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2436,264,0 chrXVI 347399 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=22.36;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2403,270,0 chrXVI 347422 . T C 1959 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;QD=20.20;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1992,222,0 chrXVI 347435 . T C 1556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=4.293;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=0;MQRankSum=1.168;QD=17.89;ReadPosRankSum=1.692;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1589,189,0 chrXVI 347437 . A G 1631 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=18.53;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1664,189,0 chrXVI 347451 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=18.18;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1724,186,0 chrXVI 347463 . G A 1612 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;QD=17.71;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1645,177,0 chrXVI 347719 . T A 2726 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=19.20;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2759,315,0 chrXVI 347757 . C G 2131 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3134;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=17.05;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2164,243,0 chrXVI 347759 . C T 2245 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=18.71;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2278,246,0 chrXVI 347790 . A C 2521 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=18.81;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2554,279,0 chrXVI 347814 . G A 2282 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=15.96;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2315,255,0 chrXVI 347838 . A G 3047 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=19.53;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3080,342,0 chrXVI 347993 . T C 3347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=3.485;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-0.968;QD=23.08;ReadPosRankSum=1.684;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3347,378,0 chrXVI 348034 . T C 2467 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.06;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2500,294,0 chrXVI 348035 . A G 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=3.121;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.102;QD=20.15;ReadPosRankSum=1.703;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2471,288,0 chrXVI 348151 . T C 3769.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=166;Dels=0.00;FS=2.764;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.318;QD=22.70;ReadPosRankSum=2.376;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3769,417,0 chrXVI 348254 . T G 3794.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.28;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3794,423,0 chrXVI 348431 . A G 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=145;Dels=0.03;FS=0.000;HaplotypeScore=56.7261;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=1.508;QD=20.12;ReadPosRankSum=1.682;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:2951,336,0 chrXVI 348505 . A T 4126.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=176;Dels=0.00;FS=3.541;HaplotypeScore=14.9211;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.737;QD=23.44;ReadPosRankSum=1.672;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:1,173:176:99:4126,453,0 chrXVI 348547 . T C 3450.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.17;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3450,396,0 chrXVI 348646 . A G 4446.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=19.0783;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.34;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4446,522,0 chrXVI 348739 . G A 4188.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.5968;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.40;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4188,453,0 chrXVI 348815 . T C 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=192;Dels=0.00;FS=7.004;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.452;QD=21.87;ReadPosRankSum=2.411;SB=-2.153e+03 GT:AD:DP:GQ:PL 1/1:2,190:192:99:4199,489,0 chrXVI 349570 . C T 4132.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.4396;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.58;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4132,444,0 chrXVI 349717 . G C 3321.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.5391;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,148:154:99:3321,378,0 chrXVI 349901 . A T 1448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.190;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.539;QD=23.74;ReadPosRankSum=3.249;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:4,57:61:99:1481,159,0 chrXVI 349988 . A G 1050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-1.347;QD=23.33;ReadPosRankSum=1.655;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:1083,123,0 chrXVI 350090 . T A 834 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:96:867,96,0 chrXVI 350213 . C T 3288.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=25.29;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3288,348,0 chrXVI 350221 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.95;MQ0=0;QD=22.52;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3051,348,0 chrXVI 350251 . T A 3109 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;QD=20.59;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3142,345,0 chrXVI 350341 . T C 5215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.174;QD=23.81;ReadPosRankSum=2.337;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:2,217:219:99:5215,588,0 chrXVI 350422 . A G 4459.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=5.0704;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=18.81;SB=-2.996e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:4459,498,0 chrXVI 350434 . A G 3613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=237;Dels=0.00;FS=6.075;HaplotypeScore=2.9389;MLEAC=2;MLEAF=1.00;MQ=42.59;MQ0=0;MQRankSum=-1.506;QD=15.24;ReadPosRankSum=2.902;SB=-2.850e+03 GT:AD:DP:GQ:PL 1/1:3,234:237:99:3613,423,0 chrXVI 350446 . C T 3745.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=41.54;MQ0=0;QD=15.80;SB=-3.111e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:3745,405,0 chrXVI 350455 . C T 3483.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;QD=15.01;SB=-3.069e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:3483,378,0 chrXVI 350476 . C T 4073.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=15.97;SB=-3.341e+03 GT:AD:DP:GQ:PL 1/1:0,255:255:99:4073,444,0 chrXVI 350533 . C T 5595.01 PASS AC=2;AF=1.00;AN=2;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=15.9660;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=19.43;SB=-3.118e+03 GT:AD:DP:GQ:PL 1/1:0,286:288:99:5595,618,0 chrXVI 350654 . C G 3928.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=20.89;SB=-1.971e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3928,441,0 chrXVI 350713 . A G 4341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.701;DP=205;Dels=0.00;FS=5.714;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=1.279;QD=21.18;ReadPosRankSum=2.917;SB=-2.069e+03 GT:AD:DP:GQ:PL 1/1:3,202:205:99:4341,489,0 chrXVI 350773 . A G 3751.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=186;Dels=0.00;FS=5.872;HaplotypeScore=14.2770;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.426;QD=20.17;ReadPosRankSum=2.864;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:3,181:186:99:3751,438,0 chrXVI 350922 . G T 4388.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=21.20;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4388,469,0 chrXVI 350926 . C A 4132.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.16;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4132,450,0 chrXVI 350968 . C T 4259.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.78;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4259,462,0 chrXVI 351571 . C T 5361.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.7619;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.04;SB=-2.398e+03 GT:AD:DP:GQ:PL 1/1:0,223:223:99:5361,585,0 chrXVI 352228 . A C 4039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.462;QD=22.19;ReadPosRankSum=1.713;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:4039,459,0 chrXVI 352479 . C T 1384 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.03;FS=0.000;HaplotypeScore=12.1028;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=13.18;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1417,156,0 chrXVI 352754 . A G 3492.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.514;QD=21.96;ReadPosRankSum=1.667;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3492,390,0 chrXVI 353099 . G A 3401.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.14;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3401,372,0 chrXVI 353307 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.66;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3596,390,0 chrXVI 353312 . A G 3449.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.65;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3449,390,0 chrXVI 353391 . G C 3906.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.82;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3906,447,0 chrXVI 353638 . C T 2461 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.59;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2494,273,0 chrXVI 353939 . G A 2577 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2610,285,0 chrXVI 354275 . C T 3950.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.32;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3950,423,0 chrXVI 354310 . C A 4168.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.65;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4168,459,0 chrXVI 354395 . A G 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=162;Dels=0.01;FS=5.987;HaplotypeScore=9.8633;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.297;QD=21.65;ReadPosRankSum=2.905;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:3,156:160:99:3508,396,0 chrXVI 354421 . G T 3631.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.2706;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.13;SB=-1.950e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3631,390,0 chrXVI 354489 . G T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.9773;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.41;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3426,375,0 chrXVI 354498 . A G 3472.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=173;Dels=0.00;FS=7.529;HaplotypeScore=5.9226;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.305;QD=20.07;ReadPosRankSum=2.364;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3472,387,0 chrXVI 354697 . G A 3776.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.17;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3776,417,0 chrXVI 354916 . C T 2907 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.02;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2940,321,0 chrXVI 355469 . C T 5606.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=19.0235;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.42;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:0,248:250:99:5606,607,0 chrXVI 355544 . C A 5925.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.59;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5925,637,0 chrXVI 355834 . T C 2819 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.30;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2852,321,0 chrXVI 356057 . G T 2036 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.85;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2069,219,0 chrXVI 356245 . T G 3330.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.756;QD=23.45;ReadPosRankSum=1.708;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3330,378,0 chrXVI 356407 . T C 3316.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.168;QD=22.71;ReadPosRankSum=1.684;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:1,143:146:99:3316,387,0 chrXVI 356553 . G A 3858.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.453;DP=175;Dels=0.00;FS=3.893;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.219;QD=22.05;ReadPosRankSum=1.692;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3858,408,0 chrXVI 356572 . C T 4002.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.13;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4002,447,0 chrXVI 356680 . C T 2673 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=17.47;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2706,294,0 chrXVI 356776 . T C 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=8.508;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-0.746;QD=21.28;ReadPosRankSum=2.314;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2735,306,0 chrXVI 356805 . G A 2810 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.13;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2843,306,0 chrXVI 356972 . C T 2370 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.55;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2403,258,0 chrXVI 356993 . C T 2461 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.58;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2494,267,0 chrXVI 357136 . T C 2021 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.21;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2054,243,0 chrXVI 357296 . T C 2077 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.10;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2110,240,0 chrXVI 357327 . G A 1771 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.14;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1804,198,0 chrXVI 357677 . G A 4235.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.34;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4235,450,0 chrXVI 357802 . T C 2606 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.4321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.90;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2639,300,0 chrXVI 358321 . A C 3573.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.19;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3573,417,0 chrXVI 358537 . A G 3748.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.450;QD=20.26;ReadPosRankSum=1.657;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:3748,426,0 chrXVI 358804 . T C 3885.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.2879;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.857;QD=21.35;ReadPosRankSum=1.713;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3885,435,0 chrXVI 358961 . C G 3442.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.8077;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.34;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3442,387,0 chrXVI 359182 . C T 3968.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.8291;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.80;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3968,438,0 chrXVI 359224 . A T 5044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=194;Dels=0.00;FS=3.561;HaplotypeScore=8.1628;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-1.732;QD=26.00;ReadPosRankSum=1.660;SB=-2.347e+03 GT:AD:DP:GQ:PL 1/1:1,193:194:99:5044,546,0 chrXVI 359258 . C G 4522.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.2991;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=24.18;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,181:187:99:4522,501,0 chrXVI 359468 . C A 847 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8979;MLEAC=2;MLEAF=1.00;MQ=32.81;MQ0=0;QD=12.46;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:880,99,0 chrXVI 359487 . G T 180.03 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=32.5011;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=2.07;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:24:213,24,0 chrXVI 359574 . T A 1452 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=24.61;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1485,162,0 chrXVI 359596 . G A 1354 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=22.95;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1387,150,0 chrXVI 359608 . A C 911 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=17.52;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:944,111,0 chrXVI 359680 . G T 858 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.73;MQ0=0;QD=16.82;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:891,96,0 chrXVI 359694 . C T 1112 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=20.59;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1145,123,0 chrXVI 359890 . T A 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=104.5026;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;MQRankSum=0.804;QD=24.90;ReadPosRankSum=2.374;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3312,369,0 chrXVI 359938 . T C 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=125;Dels=0.00;FS=2.748;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;MQRankSum=0.620;QD=22.14;ReadPosRankSum=2.332;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2800,315,0 chrXVI 359939 . T C 2806 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;QD=22.27;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2839,315,0 chrXVI 359989 . T C 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=17.1065;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;MQRankSum=-0.078;QD=19.35;ReadPosRankSum=1.665;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3033,357,0 chrXVI 360040 . T C 4422.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.36;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4422,495,0 chrXVI 360051 . T A 4425.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=21.59;SB=-2.690e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4425,486,0 chrXVI 360114 . A G 2247 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=193;Dels=0.00;FS=7.152;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=34.66;MQ0=0;MQRankSum=-2.106;QD=11.64;ReadPosRankSum=2.424;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:2280,261,0 chrXVI 360123 . G A 2274 SnpCluster AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;QD=12.49;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:2307,249,0 chrXVI 360124 . A C 2252 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=181;Dels=0.00;FS=3.656;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=0;MQRankSum=-1.732;QD=12.44;ReadPosRankSum=1.713;SB=-2.080e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:2285,258,0 chrXVI 360138 . G A 2167 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.71;MQ0=0;QD=12.31;SB=-2.152e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:2200,243,0 chrXVI 360139 . G A 2171 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=0;QD=12.27;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:2204,243,0 chrXVI 360170 . A G 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=188;Dels=0.00;FS=9.384;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=40.67;MQ0=0;MQRankSum=-2.171;QD=12.63;ReadPosRankSum=2.920;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:2408,279,0 chrXVI 360191 . C T 2318 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=14.49;SB=-2.047e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2351,255,0 chrXVI 360192 . C T 2229 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=13.67;SB=-2.050e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2262,252,0 chrXVI 360315 . G C 4299.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=21.39;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,196:201:99:4299,483,0 chrXVI 360607 . T C 4276.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4276,492,0 chrXVI 360643 . A G 4454.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.272;DP=195;Dels=0.00;FS=8.533;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.022;QD=22.84;ReadPosRankSum=3.379;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:4,191:195:99:4454,498,0 chrXVI 360727 . A G 3339.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.19;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3339,375,0 chrXVI 360769 . T G 3445.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.23;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3445,399,0 chrXVI 360991 . A T 3747.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.66;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3747,420,0 chrXVI 361001 . G A 3881.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.09;SB=-2.188e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3881,438,0 chrXVI 361070 . A G 3923.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=187;Dels=0.00;FS=3.154;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=1.431;QD=20.98;ReadPosRankSum=1.713;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:1,183:187:99:3923,450,0 chrXVI 361102 . G A 4666.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=3.243;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.606;QD=24.30;ReadPosRankSum=1.209;SB=-2.407e+03 GT:AD:DP:GQ:PL 1/1:1,191:192:99:4666,507,0 chrXVI 361351 . C T 4475.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:4475,483,0 chrXVI 361590 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1792;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.34;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2700,303,0 chrXVI 361807 . A G 2945 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.94;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2978,327,0 chrXVI 361836 . C G 2787 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.80;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2820,318,0 chrXVI 361856 . A G 2625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=137;Dels=0.00;FS=11.331;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-0.346;QD=19.16;ReadPosRankSum=2.934;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2658,297,0 chrXVI 362022 . T A 3943.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.4186;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.024;QD=21.66;ReadPosRankSum=1.617;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3943,456,0 chrXVI 362269 . G C 3037 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.17;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3070,339,0 chrXVI 362462 . T C 2967 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.31;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3000,345,0 chrXVI 362546 . T C 3369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=156;Dels=0.00;FS=6.107;HaplotypeScore=14.9793;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.887;QD=21.60;ReadPosRankSum=2.417;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:2,152:156:99:3369,399,0 chrXVI 363066 . T G 3030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=139;Dels=0.00;FS=3.506;HaplotypeScore=12.1960;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=1.259;QD=21.80;ReadPosRankSum=1.682;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3063,342,0 chrXVI 363203 . T C 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=1.115;QD=20.90;ReadPosRankSum=1.661;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3084,345,0 chrXVI 363218 . T C 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=150;Dels=0.00;FS=2.748;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-0.668;QD=20.08;ReadPosRankSum=2.417;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3045,357,0 chrXVI 363492 . C A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.94;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3304,360,0 chrXVI 363977 . A G 3059 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9583;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.53;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3092,342,0 chrXVI 364060 . T G 4051.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.28;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4051,468,0 chrXVI 364156 . T G 2549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=119;Dels=0.00;FS=3.321;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.717;QD=21.42;ReadPosRankSum=1.702;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,115:119:99:2582,291,0 chrXVI 364396 . C T 3603.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.0953;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3603,387,0 chrXVI 364453 . T C 4933.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=11.3386;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.49;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:4933,558,0 chrXVI 364729 . A G 3340.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=19.76;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3340,384,0 chrXVI 364753 . T G 3434.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.51;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3434,396,0 chrXVI 364931 . T C 4621.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=18.9652;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.34;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:4621,525,0 chrXVI 364999 . A G 4717.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=7.4982;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.82;SB=-2.206e+03 GT:AD:DP:GQ:PL 1/1:0,197:198:99:4717,525,0 chrXVI 365172 . G A 5212.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=23.6355;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.27;SB=-2.549e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5212,567,0 chrXVI 365403 . G A 3548.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.50;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3548,387,0 chrXVI 365411 . G A 3557.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.43;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3557,384,0 chrXVI 365764 . C G 3331.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.2295;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.21;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3331,387,0 chrXVI 365920 . T C 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=182;Dels=0.00;FS=4.188;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.029;QD=21.10;ReadPosRankSum=1.713;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3841,450,0 chrXVI 366019 . A G 2381 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.68;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2414,270,0 chrXVI 366522 . T C 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.030;DP=184;Dels=0.00;FS=7.475;HaplotypeScore=15.2518;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.725;QD=22.60;ReadPosRankSum=4.140;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:6,175:184:99:4159,480,0 chrXVI 366649 . G A 5317.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:5317,594,0 chrXVI 366773 . C T 5375.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=24.9921;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.94;SB=-2.454e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5375,588,0 chrXVI 366882 . T G 4559.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.68;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4559,507,0 chrXVI 367091 . C T 2854 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.95;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2887,318,0 chrXVI 367127 . C A 2617 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.0436;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.16;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2650,288,0 chrXVI 367351 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.902;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.902;QD=24.62;ReadPosRankSum=-0.807;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3668,376,0 chrXVI 367842 . G A 3628.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.12;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3628,399,0 chrXVI 368095 . G A 4003.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.7568;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.41;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:4003,438,0 chrXVI 368135 . C T 3809.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.1385;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.81;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3809,411,0 chrXVI 368362 . A G 2911 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.1656;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.40;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2944,330,0 chrXVI 369001 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3808,414,0 chrXVI 370280 . A G 5302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=236;Dels=0.00;FS=7.021;HaplotypeScore=12.4331;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.120;QD=22.47;ReadPosRankSum=2.429;SB=-2.592e+03 GT:AD:DP:GQ:PL 1/1:2,233:236:99:5302,606,0 chrXVI 373351 . T C 2790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=132;Dels=0.00;FS=2.979;HaplotypeScore=9.2973;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.257;QD=21.14;ReadPosRankSum=2.394;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2823,327,0 chrXVI 373480 . A T 3308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.844;QD=20.68;ReadPosRankSum=1.710;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3308,375,0 chrXVI 373522 . T C 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=150;Dels=0.00;FS=3.310;HaplotypeScore=9.1401;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.139;QD=20.49;ReadPosRankSum=1.686;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3107,351,0 chrXVI 375321 . C T 2253 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0498;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.30;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2286,249,0 chrXVI 377062 . T A 1735 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.66;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1768,195,0 chrXVI 377179 . G C 860 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=20.00;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,40:43:99:893,99,0 chrXVI 377336 . C T 1664 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.17;MQ0=25;QD=18.29;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1697,186,0 chrXVI 377648 . C T 2038 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.53;MQ0=15;QD=22.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2071,225,0 chrXVI 378085 . A G 2329 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.37;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2362,270,0 chrXVI 378124 . T C 1632 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=17.55;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1665,189,0 chrXVI 378130 . C A 1832 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=18.89;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1865,204,0 chrXVI 378260 . C G 2799 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2832,321,0 chrXVI 378635 . G C 3617.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=13.0331;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=21.28;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3617,426,0 chrXVI 378721 . G A 4761.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.70;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:4761,519,0 chrXVI 378809 . A T 3212.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=154;Dels=0.01;FS=2.931;HaplotypeScore=10.5806;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.075;QD=20.86;ReadPosRankSum=2.401;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3246,354,0 chrXVI 378865 . A G 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;MQRankSum=-1.325;QD=17.44;ReadPosRankSum=2.379;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:1864,213,0 chrXVI 379018 . C T 1533 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.23;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1566,177,0 chrXVI 379575 . T A 5961.01 PASS AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,279:279:99:5961,646,0 chrXVI 379870 . T A 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=3.071;HaplotypeScore=10.9457;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.131;QD=22.58;ReadPosRankSum=1.684;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3319,360,0 chrXVI 381173 . G C 2864 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2897,321,0 chrXVI 381592 . T C 2745 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.87;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2778,315,0 chrXVI 381608 . G A 2061 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.40;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2094,228,0 chrXVI 381850 . A G 152.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.189;DP=18;Dels=0.00;FS=7.533;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=0.567;QD=8.45;ReadPosRankSum=0.819;SB=1.12 GT:AD:DP:GQ:PL 1/1:3,14:18:21:185,21,0 chrXVI 381919 . A G 1235 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.29;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1268,141,0 chrXVI 381922 . A C 1256 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1289,141,0 chrXVI 381960 . C T 1674 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1707,195,0 chrXVI 382213 . A G 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.738;QD=22.28;ReadPosRankSum=1.642;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2595,291,0 chrXVI 382287 . T C 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.9111;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.556;QD=22.64;ReadPosRankSum=1.707;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3158,354,0 chrXVI 382526 . C T 5662.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.7471;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.83;SB=-2.554e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5662,607,0 chrXVI 382832 . C A 5240.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-2.515e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5240,567,0 chrXVI 383361 . T C 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=145;Dels=0.00;FS=6.551;HaplotypeScore=13.3486;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=0.299;QD=20.21;ReadPosRankSum=2.381;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:2963,336,0 chrXVI 385232 . T C 4007.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.464;DP=178;Dels=0.00;FS=2.902;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.548;QD=22.51;ReadPosRankSum=0.479;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:2,175:178:99:4007,443,0 chrXVI 385271 . C T 4280.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4280,474,0 chrXVI 385957 . A G 6910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=296;Dels=0.00;FS=12.161;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.166;QD=23.34;ReadPosRankSum=2.976;SB=-2.919e+03 GT:AD:DP:GQ:PL 1/1:3,293:296:99:6910,765,0 chrXVI 386168 . T C 4876.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.49;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:4876,575,0 chrXVI 386225 . T G 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=146;Dels=0.00;FS=4.986;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.824;QD=20.34;ReadPosRankSum=1.660;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:3002,342,0 chrXVI 386264 . C T 2966 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.2706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2999,324,0 chrXVI 386485 . T C 1930 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;QD=19.30;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1963,222,0 chrXVI 386639 . A G 2423 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=23.30;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2456,276,0 chrXVI 386960 . C T 3581.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=21.44;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3581,384,0 chrXVI 386966 . T G 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.365;DP=171;Dels=0.00;FS=15.074;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-1.638;QD=19.74;ReadPosRankSum=3.365;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:4,163:171:99:3375,384,0 chrXVI 387009 . C T 3166 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=19.07;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3199,345,0 chrXVI 387281 . T G 4580.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=18.2518;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.81;SB=-2.575e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:4580,519,0 chrXVI 387418 . T C 3676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=178;Dels=0.00;FS=6.144;HaplotypeScore=13.6490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.587;QD=20.65;ReadPosRankSum=2.408;SB=-2.227e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:3676,411,0 chrXVI 387550 . A G 4916.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=24.0029;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4916,558,0 chrXVI 388066 . A G 3733.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=162;Dels=0.00;FS=2.989;HaplotypeScore=9.2224;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.176;QD=23.04;ReadPosRankSum=2.389;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:2,159:162:99:3733,423,0 chrXVI 388170 . G C 3437.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3437,387,0 chrXVI 388241 . T A 3299.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3299,363,0 chrXVI 388417 . A G 2742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=127;Dels=0.00;FS=3.116;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.402;QD=21.59;ReadPosRankSum=1.704;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2775,318,0 chrXVI 388527 . A C 3111 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.22;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3144,351,0 chrXVI 388558 . A G 2321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.1986;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-0.992;QD=19.67;ReadPosRankSum=1.703;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2354,264,0 chrXVI 388560 . T C 2234 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=7.1986;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.93;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2267,258,0 chrXVI 388922 . A T 3995.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3995,435,0 chrXVI 389144 . A T 4418.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4418,483,0 chrXVI 389229 . A G 4906.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=216;Dels=0.00;FS=4.134;HaplotypeScore=18.4149;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.975;QD=22.71;ReadPosRankSum=1.700;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:1,214:216:99:4906,564,0 chrXVI 389519 . T C 5720.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-2.742e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:5720,674,0 chrXVI 389644 . T A 4570.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=209;Dels=0.00;FS=6.924;HaplotypeScore=12.8739;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.045;QD=21.87;ReadPosRankSum=2.391;SB=-2.429e+03 GT:AD:DP:GQ:PL 1/1:2,207:209:99:4570,501,0 chrXVI 389708 . G A 4972.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=17.5357;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.25;SB=-2.678e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4972,537,0 chrXVI 389788 . G A 4022.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.98;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,171:175:99:4022,438,0 chrXVI 389821 . T C 2759 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=18.39;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2792,312,0 chrXVI 389885 . A G 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=215;Dels=0.00;FS=3.372;HaplotypeScore=18.9480;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-1.179;QD=16.60;ReadPosRankSum=1.716;SB=-2.366e+03 GT:AD:DP:GQ:PL 1/1:1,212:215:99:3569,399,0 chrXVI 389951 . T C 4634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=235;Dels=0.00;FS=6.048;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=0.389;QD=19.72;ReadPosRankSum=2.936;SB=-2.917e+03 GT:AD:DP:GQ:PL 1/1:3,232:235:99:4634,522,0 chrXVI 389958 . G A 4805.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.71;SB=-2.989e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:4805,522,0 chrXVI 390220 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3319;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.13;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2666,297,0 chrXVI 390305 . C T 3553.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.63;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3553,384,0 chrXVI 390546 . T C 2414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=3.416;HaplotypeScore=4.6829;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.309;QD=21.55;ReadPosRankSum=1.701;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2447,288,0 chrXVI 390636 . C T 3392.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3392,369,0 chrXVI 391548 . A C 4383.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.6609;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.67;SB=-2.175e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:4383,495,0 chrXVI 391587 . G A 5621.01 PASS AC=2;AF=1.00;AN=2;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=6.6026;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.57;SB=-3.332e+03 GT:AD:DP:GQ:PL 1/1:0,249:249:99:5621,607,0 chrXVI 391605 . G A 5675.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.17;SB=-2.844e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5675,615,0 chrXVI 392013 . C T 5179.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=12.1934;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.94;SB=-2.310e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5179,567,0 chrXVI 392179 . A G 4433.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=199;Dels=0.00;FS=3.473;HaplotypeScore=14.9692;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.350;QD=22.28;ReadPosRankSum=1.715;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4433,507,0 chrXVI 392213 . T C 4079.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.9511;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=0.565;QD=22.54;ReadPosRankSum=1.713;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4079,453,0 chrXVI 392272 . A G 4049.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=15.3157;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.87;SB=-2.226e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4049,465,0 chrXVI 392434 . G C 3886.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.4279;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=18.77;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,204:207:99:3886,447,0 chrXVI 392447 . T C 4098.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.136;QD=18.80;ReadPosRankSum=1.668;SB=-2.870e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:4098,453,0 chrXVI 392460 . G A 4479.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.6035;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=19.64;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:4479,489,0 chrXVI 392536 . G T 4395.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.9222;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=20.54;SB=-2.565e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4395,477,0 chrXVI 392538 . T C 4143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=4.3449;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-0.167;QD=19.73;ReadPosRankSum=1.715;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:1,207:210:99:4143,468,0 chrXVI 392874 . A G 5784.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=15.2864;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.59;SB=-2.637e+03 GT:AD:DP:GQ:PL 1/1:0,255:256:99:5784,645,0 chrXVI 393041 . C T 5622.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.23;SB=-2.981e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5622,612,0 chrXVI 393285 . T C 4430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=210;Dels=0.00;FS=3.094;HaplotypeScore=18.3983;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.528;QD=21.10;ReadPosRankSum=1.716;SB=-2.460e+03 GT:AD:DP:GQ:PL 1/1:1,209:210:99:4430,516,0 chrXVI 393808 . T A 2527 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=60.50;MQ0=0;QD=23.62;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2560,276,0 chrXVI 394342 . C T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3289,357,0 chrXVI 394442 . T A 2597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=117;Dels=0.00;FS=4.172;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.889;QD=22.20;ReadPosRankSum=1.672;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2630,285,0 chrXVI 394592 . T C 3390.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.205;QD=24.57;ReadPosRankSum=1.707;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3390,378,0 chrXVI 395630 . T C 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.075;QD=21.66;ReadPosRankSum=1.702;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2545,297,0 chrXVI 395723 . C T 3878.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.94;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3878,420,0 chrXVI 396203 . A G 2358 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.98;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2391,285,0 chrXVI 396929 . G T 2349 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=7.6727;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=16.54;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2382,267,0 chrXVI 397229 . A G 2330 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.40;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2363,261,0 chrXVI 397584 . T C 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=175;Dels=0.00;FS=2.677;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-1.074;QD=19.82;ReadPosRankSum=2.351;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3469,387,0 chrXVI 397587 . C T 3717.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.00;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3717,402,0 chrXVI 397616 . T C 3348.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.3859;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.30;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3348,387,0 chrXVI 397779 . G A 4826.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=15.0027;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.84;SB=-2.733e+03 GT:AD:DP:GQ:PL 1/1:0,217:221:99:4826,540,0 chrXVI 398119 . A G 2752 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.02;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2785,309,0 chrXVI 398362 . G A 2569 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2602,279,0 chrXVI 398406 . G A 2539 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.51;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2572,279,0 chrXVI 398561 . G A 3181 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3214,348,0 chrXVI 398626 . C T 3419.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.64;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3419,366,0 chrXVI 398858 . T C 4604.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.9341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.032;QD=23.37;ReadPosRankSum=1.696;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:1,192:197:99:4604,537,0 chrXVI 399602 . C T 3155 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.84;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3188,348,0 chrXVI 400049 . G A 4545.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-2.209e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:4545,492,0 chrXVI 400178 . A G 5233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=234;Dels=0.00;FS=7.893;HaplotypeScore=10.2774;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.243;QD=22.36;ReadPosRankSum=2.418;SB=-2.323e+03 GT:AD:DP:GQ:PL 1/1:2,228:234:99:5233,597,0 chrXVI 400646 . C T 4444.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=14.7199;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.27;SB=-2.359e+03 GT:AD:DP:GQ:PL 1/1:0,189:191:99:4444,483,0 chrXVI 400751 . A G 3634.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.5684;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.120;QD=22.86;ReadPosRankSum=1.710;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3634,423,0 chrXVI 400919 . C T 3397.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.76;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3397,369,0 chrXVI 401426 . C T 4495.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4495,486,0 chrXVI 402020 . T C 4026.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=215;Dels=0.00;FS=4.533;HaplotypeScore=13.0754;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.163;QD=18.73;ReadPosRankSum=1.700;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:1,212:215:99:4026,471,0 chrXVI 402100 . G A 3011 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3044,330,0 chrXVI 402323 . C T 2869 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2902,312,0 chrXVI 402398 . C T 3046 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.43;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3079,336,0 chrXVI 402848 . T C 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=3.689;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.137;QD=22.61;ReadPosRankSum=1.709;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3437,384,0 chrXVI 403028 . G A 3143 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.61;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3176,345,0 chrXVI 403061 . C T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.8172;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.28;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3446,384,0 chrXVI 403103 . T A 3905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=3.274;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.713;QD=22.84;ReadPosRankSum=1.712;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3905,429,0 chrXVI 403300 . G T 102.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.864;DP=165;Dels=0.00;FS=161.580;HaplotypeScore=15.3867;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=2.680;QD=0.62;ReadPosRankSum=-7.377;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,49:165:99:132,0,1532 chrXVI 403307 . A G 2277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=17.8506;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-1.679;QD=17.25;ReadPosRankSum=1.706;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2310,270,0 chrXVI 403383 . C T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.97;SB=-1.688e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3271,354,0 chrXVI 403502 . G A 4888.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.17;SB=-2.653e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4888,540,0 chrXVI 403562 . T C 4002.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.82;SB=-2.046e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4002,453,0 chrXVI 403691 . C T 4641.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=13.3857;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.31;SB=-2.560e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4641,507,0 chrXVI 403823 . A G 3964.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.20;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:3964,468,0 chrXVI 403919 . C A 4539.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.51;SB=-2.514e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4539,510,0 chrXVI 404106 . A G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.0897;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.392;QD=14.86;ReadPosRankSum=2.423;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,183:185:99:2783,312,0 chrXVI 404554 . T C 4136.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=187;Dels=0.00;FS=11.254;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;MQRankSum=-0.564;QD=22.12;ReadPosRankSum=2.370;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:2,183:187:99:4136,459,0 chrXVI 404569 . C T 3992.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=22.68;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3992,435,0 chrXVI 404596 . A G 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.694;QD=20.63;ReadPosRankSum=2.418;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3230,375,0 chrXVI 404634 . C A 2772 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.66;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2805,306,0 chrXVI 404878 . T C 814 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=15.96;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:847,96,0 chrXVI 404886 . C T 818 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.04;FS=0.000;HaplotypeScore=4.4970;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=16.36;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:93:851,93,0 chrXVI 405804 . A G 5421.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=4.2908;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.49;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,238:241:99:5421,618,0 chrXVI 405816 . C T 5584.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=5.4336;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.07;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5584,607,0 chrXVI 406247 . A G 3866.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=169;Dels=0.00;FS=5.351;HaplotypeScore=13.2114;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.711;QD=22.88;ReadPosRankSum=1.691;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3866,441,0 chrXVI 406317 . G A 3788.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.5043;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.13;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3788,417,0 chrXVI 406922 . G T 3074 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.44;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3107,339,0 chrXVI 406948 . G A 3082 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=21.55;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3115,342,0 chrXVI 406979 . T C 3199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=0.819;QD=19.16;ReadPosRankSum=1.691;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3232,363,0 chrXVI 407033 . T C 3159 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=17.17;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3192,357,0 chrXVI 407036 . G A 3325.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=18.37;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3325,357,0 chrXVI 407712 . T C 3018 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.47;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3051,354,0 chrXVI 407799 . G A 2969 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.38;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3002,327,0 chrXVI 408112 . G A 3076 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.13;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3109,348,0 chrXVI 408303 . G A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.85;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3405,366,0 chrXVI 408319 . G A 3281.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.02;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3281,357,0 chrXVI 408835 . T C 3319.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=148;Dels=0.00;FS=7.599;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-1.071;QD=22.43;ReadPosRankSum=2.383;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3319,381,0 chrXVI 408842 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=22.05;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3142,339,0 chrXVI 408877 . C T 2870 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.1199;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=19.26;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:2903,315,0 chrXVI 408889 . G A 2724 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.4370;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=20.03;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2757,297,0 chrXVI 408904 . A T 2595 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=20.12;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2628,288,0 chrXVI 408975 . G A 2680 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.79;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2713,300,0 chrXVI 409143 . T A 2842 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=24.08;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2875,312,0 chrXVI 409177 . T G 3091 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=24.15;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3124,348,0 chrXVI 409216 . G A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.51;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3409,369,0 chrXVI 409459 . C T 4871.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4871,525,0 chrXVI 409716 . T C 5248.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=11.5283;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.640;QD=21.60;ReadPosRankSum=1.689;SB=-2.862e+03 GT:AD:DP:GQ:PL 1/1:1,241:243:99:5248,597,0 chrXVI 410004 . G C 3573.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.27;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3573,405,0 chrXVI 410176 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.50;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2807,306,0 chrXVI 410261 . C G 2817 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.0746;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.18;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2850,324,0 chrXVI 410480 . A G 2667 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.22;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2700,303,0 chrXVI 410487 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.99;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2694,294,0 chrXVI 410721 . A T 3977.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=170;Dels=0.00;FS=4.797;HaplotypeScore=7.3608;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.425;QD=23.39;ReadPosRankSum=1.671;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3977,441,0 chrXVI 410778 . A T 4492.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.02;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4492,501,0 chrXVI 410825 . T C 4146.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.1308;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.055;QD=20.63;ReadPosRankSum=2.413;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4146,468,0 chrXVI 410844 . A G 4274.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.59;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4274,480,0 chrXVI 411027 . A G 3797.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=195;Dels=0.00;FS=2.783;HaplotypeScore=12.6309;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.713;QD=19.47;ReadPosRankSum=2.398;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:2,188:195:99:3797,432,0 chrXVI 411086 . T C 3858.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.5777;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=20.09;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3858,444,0 chrXVI 411358 . C T 3890.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.72;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3890,420,0 chrXVI 411579 . G A 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.344;DP=127;Dels=0.00;FS=3.261;HaplotypeScore=9.0540;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;MQRankSum=-0.513;QD=23.27;ReadPosRankSum=-1.455;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2988,308,0 chrXVI 411924 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.4590;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2774,303,0 chrXVI 412217 . A G 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=126;Dels=0.00;FS=2.971;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.857;QD=20.69;ReadPosRankSum=2.409;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:2,120:126:99:2640,294,0 chrXVI 412310 . T C 2951 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.23;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2984,354,0 chrXVI 412529 . T C 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=98;Dels=0.00;FS=3.740;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.554;QD=23.01;ReadPosRankSum=1.696;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2288,258,0 chrXVI 412708 . C T 2913 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,122:126:99:2946,318,0 chrXVI 413248 . A G 2488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.661;QD=18.43;ReadPosRankSum=2.319;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:2,130:135:99:2521,282,0 chrXVI 413250 . C G 2448 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=18.13;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2481,288,0 chrXVI 413301 . G A 2900 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.14;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2933,315,0 chrXVI 413436 . T C 2614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=118;Dels=0.00;FS=2.599;HaplotypeScore=8.4963;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-1.184;QD=22.15;ReadPosRankSum=2.886;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:3,112:118:99:2647,294,0 chrXVI 413865 . C A 3398.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.62;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3398,372,0 chrXVI 413894 . T A 3432.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.17;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3432,372,0 chrXVI 414884 . A G 1979 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2012,225,0 chrXVI 415145 . C T 2922 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2955,321,0 chrXVI 415343 . G A 1782 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.45;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1815,198,0 chrXVI 415381 . C T 1611 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1644,177,0 chrXVI 415490 . T G 906 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.23;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:939,105,0 chrXVI 415608 . T C 1726 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1759,198,0 chrXVI 415704 . A G 2186 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.43;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2219,246,0 chrXVI 415720 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.20;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2407,258,0 chrXVI 416230 . T A 4010.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=22.03;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4010,435,0 chrXVI 416247 . A G 4031.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=8.1349;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.631;QD=20.57;ReadPosRankSum=1.697;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:1,194:196:99:4031,450,0 chrXVI 416425 . T A 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=155;Dels=0.00;FS=3.096;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.396;QD=21.68;ReadPosRankSum=1.642;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3361,381,0 chrXVI 416451 . A G 3547.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-1.691;QD=20.99;ReadPosRankSum=1.670;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3547,420,0 chrXVI 416485 . C A 4053.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.636;QD=22.27;ReadPosRankSum=1.047;SB=-2.240e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:4053,438,0 chrXVI 416547 . G A 4453.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.69;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4453,483,0 chrXVI 416620 . C T 3905.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.96;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3905,426,0 chrXVI 417505 . T C 4070.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=183;Dels=0.00;FS=2.866;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.370;QD=22.24;ReadPosRankSum=2.342;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:2,180:183:99:4070,465,0 chrXVI 418090 . T C 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=93;Dels=0.00;FS=3.153;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.317;QD=22.33;ReadPosRankSum=1.695;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2110,237,0 chrXVI 418219 . T C 2608 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3472;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.50;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2641,306,0 chrXVI 418474 . C T 3578.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=22.36;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3578,375,0 chrXVI 418475 . A G 3367.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.16;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,163:167:99:3367,381,0 chrXVI 418993 . C T 3379.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3379,375,0 chrXVI 419078 . C G 3576.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.67;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3576,408,0 chrXVI 419190 . A C 3297.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-1.281;QD=22.58;ReadPosRankSum=1.685;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3297,378,0 chrXVI 419387 . G A 2699 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=21.42;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2732,303,0 chrXVI 419431 . T C 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=-0.894;QD=19.85;ReadPosRankSum=1.709;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3070,342,0 chrXVI 419444 . G A 3102 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=20.14;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3135,339,0 chrXVI 419455 . G A 2777 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=19.70;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2810,303,0 chrXVI 419475 . C A 2461 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.38;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2494,270,0 chrXVI 419514 . G T 1918 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7198;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=19.57;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1951,213,0 chrXVI 419892 . G A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=16.8355;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.28;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3405,384,0 chrXVI 420042 . A G 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=130;Dels=0.00;FS=7.942;HaplotypeScore=11.1988;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.486;QD=21.11;ReadPosRankSum=2.392;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2777,315,0 chrXVI 420178 . T C 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=159;Dels=0.00;FS=3.263;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-0.142;QD=22.14;ReadPosRankSum=1.710;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3521,390,0 chrXVI 420351 . A G 2937 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=21.13;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2970,336,0 chrXVI 420360 . A G 2696 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.58;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2729,318,0 chrXVI 420386 . T C 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=4.078;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.899;QD=19.99;ReadPosRankSum=1.654;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2711,300,0 chrXVI 420405 . A G 2440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-1.481;QD=19.52;ReadPosRankSum=1.676;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2473,279,0 chrXVI 420632 . T C 2987 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.16;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3020,342,0 chrXVI 420721 . A G 2635 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=21.60;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2668,303,0 chrXVI 421057 . A C 3851.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.34;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3851,438,0 chrXVI 421124 . A G 3588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=155;Dels=0.00;FS=2.875;HaplotypeScore=11.9807;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.646;QD=23.15;ReadPosRankSum=2.402;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3588,396,0 chrXVI 421554 . T A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.67;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3312,357,0 chrXVI 421757 . T C 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=108;Dels=0.00;FS=3.218;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.049;QD=22.69;ReadPosRankSum=1.700;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2483,288,0 chrXVI 421833 . A G 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.851;QD=22.71;ReadPosRankSum=1.644;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2736,315,0 chrXVI 422582 . T G 3006 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.45;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3039,357,0 chrXVI 422588 . A G 2817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-0.176;QD=20.41;ReadPosRankSum=1.657;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2850,333,0 chrXVI 422730 . T C 3637.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.8747;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.360;QD=24.25;ReadPosRankSum=1.709;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3637,405,0 chrXVI 423599 . G A 3688.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.77;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3688,414,0 chrXVI 423742 . T C 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=4.415;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.798;QD=23.46;ReadPosRankSum=1.687;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3589,402,0 chrXVI 423815 . A G 3114 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.1710;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.73;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3147,351,0 chrXVI 423898 . T C 3763.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=1.383;QD=23.37;ReadPosRankSum=1.667;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3763,417,0 chrXVI 423957 . T A 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=136;Dels=0.00;FS=2.894;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.574;QD=19.28;ReadPosRankSum=2.413;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2655,294,0 chrXVI 423962 . G T 2630 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4895;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=17.89;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2663,291,0 chrXVI 424137 . G A 3406.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.86;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3406,369,0 chrXVI 424230 . G A 4138.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=23.92;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:4138,450,0 chrXVI 424251 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=160;Dels=0.00;FS=5.877;HaplotypeScore=5.9170;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=2.057;QD=22.29;ReadPosRankSum=2.956;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:3,156:160:99:3566,405,0 chrXVI 424350 . G T 379.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;DP=152;Dels=0.00;FS=266.737;HaplotypeScore=54.4381;MLEAC=1;MLEAF=0.500;MQ=52.93;MQ0=0;MQRankSum=-3.992;QD=2.49;ReadPosRankSum=-5.205;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:93,58:152:99:409,0,1278 chrXVI 424365 . A G 2018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=21.6209;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.047;QD=16.82;ReadPosRankSum=1.701;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,116:120:99:2051,237,0 chrXVI 424542 . T C 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=3.342;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=-0.815;QD=21.50;ReadPosRankSum=1.707;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2957,348,0 chrXVI 424565 . T G 2693 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=21.20;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2726,315,0 chrXVI 424578 . G A 2770 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=21.15;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2803,312,0 chrXVI 424851 . T C 3903.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.659;QD=22.05;ReadPosRankSum=2.311;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3903,447,0 chrXVI 424858 . A G 3623.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.007;DP=173;Dels=0.00;FS=3.872;HaplotypeScore=6.5318;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=1.015;QD=20.94;ReadPosRankSum=0.192;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3623,392,0 chrXVI 425055 . T C 2989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=5.453;HaplotypeScore=11.9828;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.900;QD=16.61;ReadPosRankSum=1.693;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:3022,354,0 chrXVI 425121 . G A 3543.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=23.01;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3543,381,0 chrXVI 425209 . A G 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=135;Dels=0.00;FS=3.278;HaplotypeScore=15.4436;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=0.672;QD=19.40;ReadPosRankSum=1.706;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2652,309,0 chrXVI 425242 . A G 341.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.779;DP=138;Dels=0.00;FS=4.874;HaplotypeScore=101.3440;MLEAC=1;MLEAF=0.500;MQ=53.26;MQ0=0;MQRankSum=0.768;QD=2.47;ReadPosRankSum=-2.371;SB=-1.240e+02 GT:AD:DP:GQ:PL 0/1:98,35:138:99:371,0,344 chrXVI 425275 . T C 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=141;Dels=0.00;FS=2.614;HaplotypeScore=4.0887;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;MQRankSum=-0.898;QD=14.98;ReadPosRankSum=2.415;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2145,252,0 chrXVI 425287 . A G 2667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=4.771;HaplotypeScore=5.6678;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-0.898;QD=16.36;ReadPosRankSum=1.689;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:2700,324,0 chrXVI 425377 . T A 4865.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4865,523,0 chrXVI 425451 . A G 4680.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.61;SB=-2.579e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4680,528,0 chrXVI 425480 . T G 4045.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=18.22;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:4045,471,0 chrXVI 425481 . C T 4124.01 PASS AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=18.92;SB=-2.316e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:4124,459,0 chrXVI 425955 . C A 3502.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3502,390,0 chrXVI 427046 . T C 2522 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2555,285,0 chrXVI 427120 . G A 3030 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3063,330,0 chrXVI 427238 . G T 2911 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.3390;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2944,318,0 chrXVI 427600 . T C 1719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=3.575;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.141;QD=20.96;ReadPosRankSum=1.690;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1752,201,0 chrXVI 427708 . G A 1818 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.44;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1851,201,0 chrXVI 427730 . C A 1737 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.99;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1770,192,0 chrXVI 427776 . C T 1713 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.25;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1746,192,0 chrXVI 427832 . G A 1526 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=54.1368;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.80;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1559,168,0 chrXVI 428058 . T C 3181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.292;DP=157;Dels=0.00;FS=2.399;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=0.418;QD=20.26;ReadPosRankSum=3.392;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:4,153:157:99:3214,366,0 chrXVI 428065 . G A 3475.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.81;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3475,378,0 chrXVI 428562 . C G 2899 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.47;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,131:135:99:2932,339,0 chrXVI 428616 . A G 2952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.600;QD=22.36;ReadPosRankSum=1.679;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2985,339,0 chrXVI 428691 . A G 2881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=131;Dels=0.00;FS=5.872;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.000;QD=21.99;ReadPosRankSum=2.946;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:3,127:131:99:2914,324,0 chrXVI 428880 . A G 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=126;Dels=0.00;FS=4.102;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=1.045;QD=20.80;ReadPosRankSum=1.650;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2654,300,0 chrXVI 428893 . G T 2805 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.80;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2838,306,0 chrXVI 429479 . T C 4241.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.480;QD=20.89;ReadPosRankSum=1.681;SB=-2.450e+03 GT:AD:DP:GQ:PL 1/1:1,201:203:99:4241,498,0 chrXVI 429659 . G T 2990 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.07;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3023,327,0 chrXVI 430826 . T C 3458.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=3.558;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.504;QD=22.75;ReadPosRankSum=1.687;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3458,393,0 chrXVI 431177 . T C 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=160;Dels=0.00;FS=6.061;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.437;QD=21.29;ReadPosRankSum=2.893;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:3,156:160:99:3406,390,0 chrXVI 431198 . T C 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=175;Dels=0.00;FS=2.932;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.765;QD=21.78;ReadPosRankSum=2.407;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3812,432,0 chrXVI 431368 . A G 3664.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.81;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,161:168:99:3664,414,0 chrXVI 431383 . C T 4241.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=23.17;SB=-2.376e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4241,462,0 chrXVI 431481 . T A 3807.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=22.53;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3807,411,0 chrXVI 431631 . A G 3489.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=165;Dels=0.01;FS=2.977;HaplotypeScore=137.0093;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=-0.664;QD=21.15;ReadPosRankSum=2.419;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:2,159:164:99:3489,390,0 chrXVI 431680 . G T 2658 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=107.9973;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=19.69;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2691,294,0 chrXVI 431714 . T C 2235 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=15.41;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2268,267,0 chrXVI 431737 . G A 1820 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=0;QD=12.64;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:1853,207,0 chrXVI 431744 . C T 1642 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;QD=11.65;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1675,183,0 chrXVI 431750 . A G 1578 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.3204;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=10.88;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:1611,186,0 chrXVI 431837 . G T 5243.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=9.4489;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.90;SB=-1.948e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:5243,576,0 chrXVI 431866 . A G 4821.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=11.1159;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.60;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:4821,572,0 chrXVI 431986 . C T 4225.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.8436;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=21.67;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4225,471,0 chrXVI 432114 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=15.32;SB=-2.122e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:3051,330,0 chrXVI 432149 . A G 3132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-0.799;QD=18.53;ReadPosRankSum=1.691;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3165,375,0 chrXVI 432226 . C G 5333.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.4953;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.24;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5333,597,0 chrXVI 432268 . T C 4578.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.59;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4578,534,0 chrXVI 432288 . A C 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=175;Dels=0.00;FS=3.541;HaplotypeScore=9.3321;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-1.254;QD=20.82;ReadPosRankSum=1.712;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3643,417,0 chrXVI 436158 . T C 3082 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.2329;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3115,354,0 chrXVI 436907 . A T 106.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;DP=22;Dels=0.00;FS=19.243;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.46;MQ0=13;MQRankSum=-0.573;QD=4.82;ReadPosRankSum=-1.683;SB=-2.883e+00 GT:AD:DP:GQ:PL 0/1:16,6:22:32:136,0,32 chrXVI 437182 . T G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=2.94;MQ0=193;QD=0.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:40,154:195:6:50,6,0 chrXVI 443034 . T G 38.08 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=9.37;MQ0=49;MQRankSum=-0.736;QD=0.69;ReadPosRankSum=0.736;SB=-2.694e+01 GT:AD:DP:GQ:PL 0/1:50,5:55:15:68,0,15 chrXVI 443170 . C T 2032 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=21.85;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2065,225,0 chrXVI 443226 . C T 2444 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;QD=22.22;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2477,273,0 chrXVI 443264 . A T 1807 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;QD=18.44;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1840,216,0 chrXVI 443272 . C T 1833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.178;DP=101;Dels=0.00;FS=4.318;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;MQRankSum=0.277;QD=18.15;ReadPosRankSum=0.069;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:1866,199,0 chrXVI 443279 . G T 1731 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;QD=16.64;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1764,210,0 chrXVI 443291 . C A 2168 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.14;MQ0=0;QD=18.22;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2201,252,0 chrXVI 443354 . C G 3200 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.4203;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=21.62;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3233,363,0 chrXVI 443416 . G C 4369.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=22.64;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,189:193:99:4369,504,0 chrXVI 443445 . C T 3872.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=22.38;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3872,432,0 chrXVI 443451 . A T 3692.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=181;Dels=0.00;FS=4.653;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;MQRankSum=-1.311;QD=20.40;ReadPosRankSum=1.636;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3692,411,0 chrXVI 443461 . T C 3613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;MQRankSum=0.088;QD=20.41;ReadPosRankSum=1.713;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3613,414,0 chrXVI 443600 . G C 3718.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.67;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3718,432,0 chrXVI 443636 . A G 4050.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=22.50;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4050,459,0 chrXVI 443638 . G C 3857.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=21.43;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3857,450,0 chrXVI 443969 . G C 3403.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=16.4430;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.14;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3403,384,0 chrXVI 444118 . T C 3561.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.0030;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3561,396,0 chrXVI 445378 . G T 2813 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.81;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:2846,309,0 chrXVI 445607 . G A 1310 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.47;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1343,147,0 chrXVI 445861 . T C 1732 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.4019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1765,204,0 chrXVI 445985 . C T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.87;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3457,375,0 chrXVI 446787 . A G 4383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=200;Dels=0.00;FS=3.054;HaplotypeScore=17.6618;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.641;QD=21.92;ReadPosRankSum=1.715;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4383,513,0 chrXVI 449919 . G A 4159.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.7640;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.23;SB=-2.170e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4159,459,0 chrXVI 450060 . T C 3796.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=174;Dels=0.00;FS=2.818;HaplotypeScore=9.7562;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.598;QD=21.82;ReadPosRankSum=2.407;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3796,423,0 chrXVI 450160 . T C 5066.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=226;Dels=0.00;FS=2.864;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.069;QD=22.42;ReadPosRankSum=2.417;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:2,222:226:99:5066,588,0 chrXVI 450252 . T C 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=4.914;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.598;QD=20.77;ReadPosRankSum=1.643;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3252,384,0 chrXVI 450430 . G A 2579 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.31;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2612,294,0 chrXVI 450537 . A C 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=109;Dels=0.00;FS=10.128;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.968;QD=24.07;ReadPosRankSum=2.404;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2657,294,0 chrXVI 450581 . C T 3063 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.31;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3096,336,0 chrXVI 450675 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.22;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:3098,336,0 chrXVI 450699 . A T 2799 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.76;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2832,309,0 chrXVI 450731 . T A 3062 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.68;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3095,336,0 chrXVI 450830 . C T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3606,408,0 chrXVI 451048 . C T 2621 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.66;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2654,300,0 chrXVI 451153 . T G 2223 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=17.37;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2256,267,0 chrXVI 451219 . T C 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=2.709;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.183;QD=21.30;ReadPosRankSum=2.411;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2759,315,0 chrXVI 451247 . T C 2776 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.94;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2809,321,0 chrXVI 451317 . A G 1588 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.60;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1621,180,0 chrXVI 451383 . C G 1351 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.30;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1384,159,0 chrXVI 451557 . G A 1828 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.76;MQ0=0;QD=25.75;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1861,204,0 chrXVI 451703 . G T 1938 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1971,216,0 chrXVI 451866 . A G 2443 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=13.3393;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.36;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2476,276,0 chrXVI 451895 . G C 2936 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.94;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2969,333,0 chrXVI 451996 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3282,363,0 chrXVI 452113 . A C 2729 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=19.63;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2762,315,0 chrXVI 452126 . C T 2616 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=18.96;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2649,288,0 chrXVI 452140 . A G 2569 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=18.09;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2602,300,0 chrXVI 452203 . G A 3844.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.3068;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.45;SB=-2.126e+03 GT:AD:DP:GQ:PL 1/1:0,186:188:99:3844,432,0 chrXVI 452400 . G C 4443.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.6752;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.55;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4443,495,0 chrXVI 452674 . G A 4152.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.33;SB=-2.335e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4152,447,0 chrXVI 452848 . C T 4347.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.7776;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=22.07;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4347,474,0 chrXVI 452854 . G A 3953.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.0421;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.03;SB=-2.418e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3953,429,0 chrXVI 452986 . G A 4747.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,198:200:99:4747,516,0 chrXVI 453314 . C T 2694 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.84;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2727,297,0 chrXVI 453508 . C T 2602 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.05;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2635,288,0 chrXVI 453647 . A G 151.06 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.40;MQ0=0;QD=3.02;SB=-1.531e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:21:184,21,0 chrXVI 453659 . G A 805 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=16.0771;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=9.36;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:93:838,93,0 chrXVI 453723 . C T 2965 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.31;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2998,330,0 chrXVI 453873 . C T 2736 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.89;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2769,303,0 chrXVI 453887 . T A 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.989;QD=20.27;ReadPosRankSum=2.476;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:4,137:141:99:2891,306,0 chrXVI 454437 . G A 6583.01 PASS AC=2;AF=1.00;AN=2;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=18.4674;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.39;SB=-3.132e+03 GT:AD:DP:GQ:PL 1/1:0,292:294:99:6583,741,0 chrXVI 454517 . A G 9873.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=456;Dels=0.00;FS=8.319;HaplotypeScore=27.2765;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.962;QD=21.65;ReadPosRankSum=2.417;SB=-4.277e+03 GT:AD:DP:GQ:PL 1/1:2,448:456:99:9873,1134,0 chrXVI 454578 . T G 7067.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=401;Dels=0.00;FS=0.000;HaplotypeScore=14.2738;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.456;QD=17.62;ReadPosRankSum=1.715;SB=-4.863e+03 GT:AD:DP:GQ:PL 1/1:1,399:401:99:7067,827,0 chrXVI 454587 . C T 6915.01 filter AC=2;AF=1.00;AN=2;DP=382;Dels=0.00;FS=0.000;HaplotypeScore=8.5318;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=18.10;SB=-4.856e+03 GT:AD:DP:GQ:PL 1/1:0,381:382:99:6915,759,0 chrXVI 454958 . T C 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=172;Dels=0.00;FS=9.339;HaplotypeScore=11.8421;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.487;QD=15.52;ReadPosRankSum=2.275;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:2,167:172:99:2703,306,0 chrXVI 455063 . G C 4123.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=18.49;SB=-2.205e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4123,468,0 chrXVI 455086 . A G 3459.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=157.5408;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=18.30;SB=-2.313e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3459,390,0 chrXVI 455098 . A C 37.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=3.370;HaplotypeScore=170.6278;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=-0.335;QD=0.21;ReadPosRankSum=1.712;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:1,175:177:9:70,9,0 chrXVI 455320 . G A 3641.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=22.34;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3641,405,0 chrXVI 455359 . T A 3483.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.22;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3483,375,0 chrXVI 455657 . A G 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.057;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.354;QD=21.11;ReadPosRankSum=1.658;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1996,231,0 chrXVI 455724 . T C 1344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.650;QD=16.59;ReadPosRankSum=1.472;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1377,156,0 chrXVI 455737 . A C 1509 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=20.39;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1542,180,0 chrXVI 455846 . T C 2466 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.21;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2499,282,0 chrXVI 455851 . A G 2310 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.09;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2343,264,0 chrXVI 455955 . G A 3055 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.97;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3088,336,0 chrXVI 456390 . G T 3577.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=3.090;HaplotypeScore=11.9000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.346;QD=21.55;ReadPosRankSum=1.291;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3577,390,0 chrXVI 456456 . G A 3668.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.51;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3668,402,0 chrXVI 456568 . A G 3270.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.83;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:3270,369,0 chrXVI 456878 . T A 1141 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.82;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1174,126,0 chrXVI 456975 . T A 944 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.95;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:977,111,0 chrXVI 457330 . G A 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=144;Dels=0.00;FS=3.919;HaplotypeScore=9.1047;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.012;QD=21.59;ReadPosRankSum=-1.102;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3142,323,0 chrXVI 457391 . C T 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.945;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.5736;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.052;QD=21.52;ReadPosRankSum=1.128;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2874,292,0 chrXVI 457634 . C T 3121 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.78;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3154,351,0 chrXVI 458206 . C T 4383.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=12.6960;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.82;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4383,477,0 chrXVI 458473 . T C 3867.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=3.757;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.517;QD=22.61;ReadPosRankSum=1.692;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3867,435,0 chrXVI 458497 . T C 3741.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=192;Dels=0.00;FS=7.453;HaplotypeScore=11.4442;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=0.673;QD=19.48;ReadPosRankSum=2.384;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:2,186:192:99:3741,441,0 chrXVI 458635 . G C 2502 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=14.5872;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=1;QD=18.81;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2535,291,0 chrXVI 458912 . A G 3060 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.25;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3093,360,0 chrXVI 458921 . A G 2668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=137;Dels=0.00;FS=10.591;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.917;QD=19.47;ReadPosRankSum=2.948;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:3,131:137:99:2701,315,0 chrXVI 458976 . G A 3078 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=21.52;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3111,339,0 chrXVI 459034 . A G 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.990;QD=21.39;ReadPosRankSum=1.707;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3027,342,0 chrXVI 459228 . A G 3047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=137;Dels=0.00;FS=3.947;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.698;QD=22.24;ReadPosRankSum=1.706;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,133:137:99:3080,342,0 chrXVI 459330 . T G 2522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=125;Dels=0.00;FS=3.495;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=0.296;QD=20.18;ReadPosRankSum=1.704;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2555,291,0 chrXVI 459333 . T C 2307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=120;Dels=0.00;FS=3.352;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.539;QD=19.22;ReadPosRankSum=1.645;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2340,276,0 chrXVI 459604 . A G 2715 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.0286;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.24;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2748,306,0 chrXVI 459929 . A G 4018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.134;QD=23.92;ReadPosRankSum=1.711;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4018,447,0 chrXVI 460602 . C T 1138 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1171,132,0 chrXVI 460613 . A T 1131 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-1.155;QD=18.85;ReadPosRankSum=1.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1164,129,0 chrXVI 460696 . G A 468 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:24:57:501,57,0 chrXVI 460761 . T C 3094 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=2.161;QD=24.17;ReadPosRankSum=2.411;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3127,363,0 chrXVI 461198 . T C 3805.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=16.4918;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.630;QD=21.38;ReadPosRankSum=1.673;SB=-2.150e+03 GT:AD:DP:GQ:PL 1/1:1,175:178:99:3805,435,0 chrXVI 462319 . A G 3205.99 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3239,357,0 chrXVI 462654 . G A 6354.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=15.9249;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=25.02;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,253:254:99:6354,685,0 chrXVI 462756 . T C 6578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.301;DP=318;Dels=0.01;FS=5.214;HaplotypeScore=27.7855;MLEAC=2;MLEAF=1.00;MQ=61.46;MQ0=0;MQRankSum=0.599;QD=20.69;ReadPosRankSum=3.218;SB=-2.824e+03 GT:AD:DP:GQ:PL 1/1:4,311:315:99:6578,747,0 chrXVI 462811 . A G 1676 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.328;DP=404;Dels=0.00;FS=22.080;HaplotypeScore=20.6991;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;MQRankSum=-1.943;QD=4.15;ReadPosRankSum=4.499;SB=-4.790e+03 GT:AD:DP:GQ:PL 1/1:7,396:404:99:1709,198,0 chrXVI 462936 . C T 7745.01 PASS AC=2;AF=1.00;AN=2;DP=346;Dels=0.00;FS=0.000;HaplotypeScore=26.5933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-4.472e+03 GT:AD:DP:GQ:PL 1/1:0,345:346:99:7745,844,0 chrXVI 463023 . G A 8142.01 filter AC=2;AF=1.00;AN=2;DP=384;Dels=0.00;FS=0.000;HaplotypeScore=35.5387;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.20;SB=-4.435e+03 GT:AD:DP:GQ:PL 1/1:0,381:384:99:8142,883,0 chrXVI 464077 . C T 2766 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.9017;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.78;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2799,312,0 chrXVI 464292 . G A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=15.9789;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.65;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3616,405,0 chrXVI 464559 . G A 5939.01 PASS AC=2;AF=1.00;AN=2;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=20.77;SB=-3.156e+03 GT:AD:DP:GQ:PL 1/1:0,283:286:99:5939,669,0 chrXVI 464714 . G A 7138.01 PASS AC=2;AF=1.00;AN=2;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=29.8492;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-3.599e+03 GT:AD:DP:GQ:PL 1/1:0,311:312:99:7138,778,0 chrXVI 465255 . A G 5281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=226;Dels=0.00;FS=4.657;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.717;QD=23.37;ReadPosRankSum=1.701;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:5281,603,0 chrXVI 467087 . G C 2542 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.02;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,123:127:99:2575,297,0 chrXVI 468512 . A C 5210.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=9.4964;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.08;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5210,609,0 chrXVI 470860 . C G 4816.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,199:201:99:4816,549,0 chrXVI 471891 . A G 2988 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.4968;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.15;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3021,339,0 chrXVI 472894 . G T 1827 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.00;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1860,198,0 chrXVI 473470 . G C 3650.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,154:157:99:3650,405,0 chrXVI 473594 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.60;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3345,366,0 chrXVI 474237 . C T 3541.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.8666;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.77;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3541,384,0 chrXVI 474371 . C T 3823.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.1108;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.31;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3823,420,0 chrXVI 474450 . A G 3694.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=12.7403;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.87;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3694,432,0 chrXVI 474526 . C T 4919.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=18.3042;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.26;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:4919,531,0 chrXVI 474863 . C A 3727.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.15;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3727,405,0 chrXVI 476616 . G A 3114 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3147,342,0 chrXVI 477202 . A T 2846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=131;Dels=0.00;FS=3.216;HaplotypeScore=12.5035;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.746;QD=21.73;ReadPosRankSum=1.679;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2879,315,0 chrXVI 477481 . C G 3640.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.04;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3640,411,0 chrXVI 477532 . G A 4304.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-2.221e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4304,462,0 chrXVI 478141 . G A 3511.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=14.1953;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.41;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3511,381,0 chrXVI 478474 . T G 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.413;QD=21.84;ReadPosRankSum=1.687;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3341,390,0 chrXVI 480242 . A G 2572 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2605,291,0 chrXVI 480921 . C A 4353.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=12.2226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.943e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4353,468,0 chrXVI 481644 . G A 5460.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=16.0132;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.67;SB=-2.778e+03 GT:AD:DP:GQ:PL 1/1:0,252:252:99:5460,624,0 chrXVI 481833 . A G 4613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.349;DP=220;Dels=0.00;FS=5.103;HaplotypeScore=8.8924;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.864;QD=20.97;ReadPosRankSum=3.413;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:4,215:220:99:4613,519,0 chrXVI 482968 . T G 4343.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.5452;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.88;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4343,524,0 chrXVI 483004 . G A 3781.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=16.80;SB=-2.395e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:3781,417,0 chrXVI 483142 . C T 5701.01 PASS AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=15.2642;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.44;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:5701,621,0 chrXVI 483298 . T G 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=182;Dels=0.00;FS=8.799;HaplotypeScore=5.8308;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=0.293;QD=19.25;ReadPosRankSum=3.364;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:4,178:182:99:3503,411,0 chrXVI 483319 . T A 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=183;Dels=0.00;FS=3.001;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=0.331;QD=19.14;ReadPosRankSum=2.382;SB=-2.207e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3503,387,0 chrXVI 483355 . T C 2912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.351;DP=177;Dels=0.00;FS=8.593;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;MQRankSum=-0.962;QD=16.45;ReadPosRankSum=3.331;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:4,173:177:99:2945,348,0 chrXVI 483359 . G T 2935 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1451;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=17.16;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:2968,324,0 chrXVI 483539 . T C 5027.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=238;Dels=0.00;FS=2.063;HaplotypeScore=16.1978;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.787;QD=21.12;ReadPosRankSum=2.574;SB=-2.979e+03 GT:AD:DP:GQ:PL 1/1:4,232:238:99:5027,540,0 chrXVI 483562 . C T 5286.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.49;SB=-3.032e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5286,579,0 chrXVI 483616 . C T 5211.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.36;SB=-2.583e+03 GT:AD:DP:GQ:PL 1/1:0,232:233:99:5211,576,0 chrXVI 484249 . G A 3077 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.5303;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.14;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3110,348,0 chrXVI 484285 . C T 3786.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3786,405,0 chrXVI 484357 . C T 3204 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.6598;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.65;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3237,354,0 chrXVI 484393 . C G 3484.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.33;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,153:156:99:3484,393,0 chrXVI 484429 . T C 4718.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=201;Dels=0.00;FS=2.654;HaplotypeScore=17.9715;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.080;QD=23.47;ReadPosRankSum=2.425;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4718,543,0 chrXVI 484624 . G C 5466.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.36;SB=-2.561e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5466,624,0 chrXVI 485355 . T C 4166.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=181;Dels=0.00;FS=12.483;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.304;QD=23.02;ReadPosRankSum=3.373;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:4,177:181:99:4166,465,0 chrXVI 485875 . A G 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=135;Dels=0.00;FS=4.871;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=2;MQRankSum=-1.286;QD=22.34;ReadPosRankSum=1.627;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3049,342,0 chrXVI 486646 . G A 4594.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.2967;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.44;SB=-2.329e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4594,495,0 chrXVI 487204 . C T 2397 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.5049;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.59;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2430,267,0 chrXVI 487322 . C T 2600 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.07;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2633,282,0 chrXVI 488233 . G A 2577 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.0038;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2610,282,0 chrXVI 489509 . G A 5493.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=11.1081;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.18;SB=-2.595e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:5493,615,0 chrXVI 490297 . A G 3281.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=155;Dels=0.00;FS=2.973;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.785;QD=21.17;ReadPosRankSum=2.402;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3281,363,0 chrXVI 490906 . T C 3490.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.342;QD=23.58;ReadPosRankSum=1.709;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3490,393,0 chrXVI 491464 . A G 4389.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.729;QD=22.98;ReadPosRankSum=1.714;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4389,492,0 chrXVI 491906 . T C 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=2.877;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.801;QD=22.85;ReadPosRankSum=2.381;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3291,369,0 chrXVI 493232 . A G 3922.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=12.8988;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.436;QD=21.43;ReadPosRankSum=2.409;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:2,181:183:99:3922,441,0 chrXVI 493529 . C T 3500.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.97;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3500,381,0 chrXVI 493986 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=146;Dels=0.00;FS=5.706;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.055;QD=23.70;ReadPosRankSum=2.924;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3460,381,0 chrXVI 494455 . T C 3884.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.523;QD=23.40;ReadPosRankSum=1.711;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3884,438,0 chrXVI 495156 . A G 3837.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=173;Dels=0.00;FS=2.613;HaplotypeScore=13.8798;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.782;QD=22.18;ReadPosRankSum=2.407;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3837,441,0 chrXVI 495265 . A G 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.355;QD=22.37;ReadPosRankSum=1.709;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3289,378,0 chrXVI 498437 . A G 5600.01 PASS AC=2;AF=1.00;AN=2;DP=261;Dels=0.00;FS=0.000;HaplotypeScore=12.8468;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.46;SB=-2.851e+03 GT:AD:DP:GQ:PL 1/1:0,261:261:99:5600,645,0 chrXVI 498597 . G T 5860.01 PASS AC=2;AF=1.00;AN=2;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=17.6297;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.78;SB=-2.679e+03 GT:AD:DP:GQ:PL 1/1:0,278:282:99:5860,636,0 chrXVI 498617 . T C 4705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=244;Dels=0.00;FS=4.321;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.073;QD=19.28;ReadPosRankSum=1.688;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:1,237:244:99:4705,534,0 chrXVI 498645 . G C 4066.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=12.3646;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=18.74;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:4066,462,0 chrXVI 499315 . G A 3869.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.69;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:3869,432,0 chrXVI 499388 . G A 3743.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3743,408,0 chrXVI 499979 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=147;Dels=0.00;FS=2.995;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.864;QD=22.31;ReadPosRankSum=2.399;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3280,372,0 chrXVI 500615 . G A 3879.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.71;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3879,417,0 chrXVI 500831 . C T 6954.01 PASS AC=2;AF=1.00;AN=2;DP=287;Dels=0.00;FS=0.000;HaplotypeScore=11.8773;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.23;SB=-2.971e+03 GT:AD:DP:GQ:PL 1/1:0,286:287:99:6954,762,0 chrXVI 501035 . T C 5409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=259;Dels=0.00;FS=9.993;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.489;QD=20.88;ReadPosRankSum=2.421;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:2,256:259:99:5409,606,0 chrXVI 501709 . G C 4150.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.93;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4150,468,0 chrXVI 502052 . G A 3307.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.3549;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3307,357,0 chrXVI 502526 . C T 1629 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.94;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1662,189,0 chrXVI 503157 . C G 3707.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.26;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:0,178:183:99:3707,432,0 chrXVI 503314 . A G 2562 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.4061;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.35;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2595,297,0 chrXVI 503732 . C T 5417.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.4870;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.08;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,216:216:99:5417,600,0 chrXVI 506058 . T G 6213.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=281;Dels=0.00;FS=3.088;HaplotypeScore=15.3250;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.980;QD=22.11;ReadPosRankSum=1.695;SB=-3.503e+03 GT:AD:DP:GQ:PL 1/1:1,280:281:99:6213,708,0 chrXVI 506129 . T C 4956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=218;Dels=0.00;FS=3.345;HaplotypeScore=12.7781;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.219;QD=22.73;ReadPosRankSum=1.716;SB=-2.482e+03 GT:AD:DP:GQ:PL 1/1:1,215:218:99:4956,552,0 chrXVI 507169 . A G 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=158;Dels=0.00;FS=9.626;HaplotypeScore=12.1997;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=0.204;QD=19.69;ReadPosRankSum=2.943;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:3,155:158:99:3144,351,0 chrXVI 507195 . T C 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;MQRankSum=0.758;QD=17.26;ReadPosRankSum=1.709;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:2708,300,0 chrXVI 507201 . A G 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=3.353;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;MQRankSum=-0.680;QD=16.65;ReadPosRankSum=1.688;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:2664,303,0 chrXVI 507218 . C A 2952 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=16.31;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:2985,327,0 chrXVI 507225 . A G 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=177;Dels=0.00;FS=2.974;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;MQRankSum=1.603;QD=15.16;ReadPosRankSum=2.394;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:2717,312,0 chrXVI 507296 . T C 3155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=163;Dels=0.00;FS=4.090;HaplotypeScore=14.3810;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=1.187;QD=19.36;ReadPosRankSum=1.710;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,158:163:99:3188,372,0 chrXVI 508553 . C T 3516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.469;DP=145;Dels=0.00;FS=3.163;HaplotypeScore=7.2807;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.776;QD=24.25;ReadPosRankSum=-1.422;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3516,359,0 chrXVI 508697 . C T 3072 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=19.82;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3105,339,0 chrXVI 508709 . G A 2965 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=19.25;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2998,330,0 chrXVI 508790 . C A 4374.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.02;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:0,188:190:99:4374,489,0 chrXVI 508976 . G A 4113.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.24;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4113,447,0 chrXVI 509014 . A G 4161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=182;Dels=0.00;FS=3.035;HaplotypeScore=14.8066;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.812;QD=22.86;ReadPosRankSum=2.395;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:2,178:182:99:4161,468,0 chrXVI 509591 . C T 3209 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.98;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3242,351,0 chrXVI 509606 . A G 2859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=143;Dels=0.00;FS=6.363;HaplotypeScore=5.9248;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.318;QD=19.99;ReadPosRankSum=1.298;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2892,308,0 chrXVI 510900 . A G 3469.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.5307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.053;QD=21.15;ReadPosRankSum=1.690;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3469,408,0 chrXVI 510985 . A G 3535.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4003;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3535,402,0 chrXVI 511469 . A T 1786 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1819,201,0 chrXVI 512747 . T C 2228 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.54;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2261,267,0 chrXVI 512760 . T C 2242 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=19.00;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2275,267,0 chrXVI 512998 . T C 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=1.232;QD=22.88;ReadPosRankSum=1.666;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2413,270,0 chrXVI 513585 . G A 4676.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.3319;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.23;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4676,516,0 chrXVI 513619 . G A 5468.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=20.9043;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.09;SB=-2.121e+03 GT:AD:DP:GQ:PL 1/1:0,224:227:99:5468,594,0 chrXVI 517281 . T C 4109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.375;DP=185;Dels=0.00;FS=8.474;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.232;QD=22.21;ReadPosRankSum=3.413;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:4,181:185:99:4109,477,0 chrXVI 517387 . A G 3595.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.40;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3595,402,0 chrXVI 518138 . C G 3806.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=16.1745;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.26;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3806,438,0 chrXVI 518388 . G A 2796 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.8230;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.19;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2829,309,0 chrXVI 518479 . A G 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.00;FS=3.637;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.646;QD=23.07;ReadPosRankSum=1.706;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3148,354,0 chrXVI 518518 . A G 3126 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.23;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3159,351,0 chrXVI 518836 . A G 5092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=9.2420;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.440;QD=21.49;ReadPosRankSum=1.703;SB=-2.716e+03 GT:AD:DP:GQ:PL 1/1:1,235:237:99:5092,579,0 chrXVI 519038 . C T 5721.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=36.6801;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.26;SB=-2.903e+03 GT:AD:DP:GQ:PL 1/1:0,256:257:99:5721,621,0 chrXVI 519162 . C A 3847.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.25;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:3847,417,0 chrXVI 519322 . A G 5380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=243;Dels=0.00;FS=6.074;HaplotypeScore=17.7954;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.108;QD=22.14;ReadPosRankSum=2.971;SB=-3.002e+03 GT:AD:DP:GQ:PL 1/1:3,239:243:99:5380,609,0 chrXVI 519355 . G A 5560.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=14.5316;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.66;SB=-2.308e+03 GT:AD:DP:GQ:PL 1/1:0,233:235:99:5560,603,0 chrXVI 519435 . T C 5354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.279;DP=242;Dels=0.00;FS=5.223;HaplotypeScore=20.6358;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.832;QD=22.12;ReadPosRankSum=3.381;SB=-2.140e+03 GT:AD:DP:GQ:PL 1/1:4,238:242:99:5354,624,0 chrXVI 519721 . T C 4249.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.86;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,211:214:99:4249,486,0 chrXVI 519727 . A G 4089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.967;DP=211;Dels=0.00;FS=11.419;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=-1.091;QD=19.38;ReadPosRankSum=2.928;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:3,207:211:99:4089,483,0 chrXVI 519754 . G T 4673.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=9.5445;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=19.63;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:4673,519,0 chrXVI 520069 . G A 4338.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=8.1454;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.06;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4338,480,0 chrXVI 520114 . G A 4065.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=19.00;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4065,444,0 chrXVI 520118 . G A 3537.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=16.15;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:3537,411,0 chrXVI 520138 . T C 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=226;Dels=0.00;FS=3.629;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=1.042;QD=13.87;ReadPosRankSum=1.686;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:1,225:226:99:3167,372,0 chrXVI 520162 . A C 3200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-0.211;QD=13.91;ReadPosRankSum=1.702;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:3233,366,0 chrXVI 520194 . A T 3728.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=15.73;SB=-2.357e+03 GT:AD:DP:GQ:PL 1/1:0,237:237:99:3728,417,0 chrXVI 520226 . C T 4705.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=13.3879;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=19.77;SB=-2.503e+03 GT:AD:DP:GQ:PL 1/1:0,235:238:99:4705,510,0 chrXVI 520400 . T C 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=150;Dels=0.00;FS=7.800;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;MQRankSum=-0.371;QD=17.89;ReadPosRankSum=2.351;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:2716,303,0 chrXVI 520404 . G A 2734 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=18.86;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2767,300,0 chrXVI 520428 . A G 2922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.6529;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-0.920;QD=17.82;ReadPosRankSum=1.647;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:1,161:164:99:2955,339,0 chrXVI 520764 . G A 639 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.79;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:72:672,72,0 chrXVI 520832 . T C 544 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.70;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:63:577,63,0 chrXVI 521079 . C T 103.26 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.88;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:136,15,0 chrXVI 521102 . A C 94.26 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.28;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:127,15,0 chrXVI 521108 . C A 105.26 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.02;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:138,15,0 chrXVI 521109 . T C 95.26 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.35;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:128,15,0 chrXVI 521114 . A C 69.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.579;QD=4.63;ReadPosRankSum=0.810;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:1,14:15:12:102,12,0 chrXVI 521121 . T C 94.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=2.9015;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.085;QD=5.89;ReadPosRankSum=-1.735;SB=-2.455e-01 GT:AD:DP:GQ:PL 1/1:1,15:16:15:127,15,0 chrXVI 521292 . T C 1095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.593;QD=22.81;ReadPosRankSum=2.193;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:2,46:48:99:1128,129,0 chrXVI 521328 . G A 1986 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=23.36;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2019,219,0 chrXVI 521580 . T C 4461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.158;QD=22.31;ReadPosRankSum=1.662;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:1,198:200:99:4461,510,0 chrXVI 521737 . A G 4811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=240;Dels=0.00;FS=10.120;HaplotypeScore=16.0637;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-1.899;QD=20.05;ReadPosRankSum=2.928;SB=-2.760e+03 GT:AD:DP:GQ:PL 1/1:3,235:240:99:4811,558,0 chrXVI 521941 . G T 5469.01 PASS AC=2;AF=1.00;AN=2;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=5.2962;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=22.05;SB=-3.216e+03 GT:AD:DP:GQ:PL 1/1:0,245:248:99:5469,597,0 chrXVI 521945 . C G 5290.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=6.0069;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=21.50;SB=-3.096e+03 GT:AD:DP:GQ:PL 1/1:0,245:246:99:5290,594,0 chrXVI 522033 . G A 5619.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.063;DP=309;Dels=0.00;FS=5.209;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;MQRankSum=4.566;QD=18.18;ReadPosRankSum=5.033;SB=-3.339e+03 GT:AD:DP:GQ:PL 1/1:25,284:309:99:5619,607,0 chrXVI 522075 . A G 1092.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.813;DP=383;Dels=0.00;FS=32.775;HaplotypeScore=576.7495;MLEAC=1;MLEAF=0.500;MQ=35.08;MQ0=0;MQRankSum=3.384;QD=2.85;ReadPosRankSum=5.252;SB=-7.990e+02 GT:AD:DP:GQ:PL 0/1:252,131:383:99:1122,0,671 chrXVI 522090 . G A 63.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.362;DP=358;Dels=0.00;FS=8.047;HaplotypeScore=692.9337;MLEAC=1;MLEAF=0.500;MQ=31.88;MQ0=0;MQRankSum=-0.498;QD=0.18;ReadPosRankSum=3.564;SB=-4.610e+02 GT:AD:DP:GQ:PL 0/1:274,83:357:93:93,0,928 chrXVI 522099 . A G 405.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.131;DP=311;Dels=0.00;FS=5.410;HaplotypeScore=482.8553;MLEAC=1;MLEAF=0.500;MQ=32.35;MQ0=0;MQRankSum=-1.445;QD=1.30;ReadPosRankSum=-1.532;SB=-1.267e+03 GT:AD:DP:GQ:PL 0/1:158,153:311:99:435,0,260 chrXVI 522102 . A G 320.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.966;DP=307;Dels=0.01;FS=21.867;HaplotypeScore=372.0497;MLEAC=1;MLEAF=0.500;MQ=32.25;MQ0=0;MQRankSum=-0.998;QD=1.04;ReadPosRankSum=-3.547;SB=-3.520e+02 GT:AD:DP:GQ:PL 0/1:235,69:304:99:350,0,457 chrXVI 522104 . C A 536.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=11.033;DP=300;Dels=0.01;FS=6.563;HaplotypeScore=369.9896;MLEAC=1;MLEAF=0.500;MQ=32.60;MQ0=0;MQRankSum=0.772;QD=1.79;ReadPosRankSum=-0.784;SB=-1.339e+03 GT:AD:DP:GQ:PL 0/1:138,159:297:99:566,0,212 chrXVI 522105 . A G 564.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.454;DP=300;Dels=0.00;FS=8.458;HaplotypeScore=367.7221;MLEAC=1;MLEAF=0.500;MQ=32.75;MQ0=0;MQRankSum=1.938;QD=1.88;ReadPosRankSum=0.424;SB=-1.348e+03 GT:AD:DP:GQ:PL 0/1:137,161:300:99:594,0,238 chrXVI 522108 . A G 366.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.975;DP=302;Dels=0.00;FS=24.379;HaplotypeScore=208.0660;MLEAC=1;MLEAF=0.500;MQ=33.82;MQ0=0;MQRankSum=-1.894;QD=1.21;ReadPosRankSum=-7.006;SB=-3.520e+02 GT:AD:DP:GQ:PL 0/1:233,69:302:99:396,0,876 chrXVI 522118 . C A 252.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.507;DP=289;Dels=0.00;FS=16.053;HaplotypeScore=157.6333;MLEAC=1;MLEAF=0.500;MQ=36.77;MQ0=0;MQRankSum=-1.211;QD=0.87;ReadPosRankSum=-8.465;SB=-1.530e+02 GT:AD:DP:GQ:PL 0/1:241,48:289:99:282,0,1274 chrXVI 522120 . G T 178.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.366;DP=284;Dels=0.00;FS=14.756;HaplotypeScore=110.1066;MLEAC=1;MLEAF=0.500;MQ=37.02;MQ0=0;MQRankSum=-2.324;QD=0.63;ReadPosRankSum=-9.994;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:233,47:284:99:208,0,1351 chrXVI 522126 . A G 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.659;DP=291;Dels=0.00;FS=0.513;HaplotypeScore=91.3084;MLEAC=1;MLEAF=0.500;MQ=38.49;MQ0=0;MQRankSum=-3.502;QD=0.10;ReadPosRankSum=-6.440;SB=-4.290e+02 GT:AD:DP:GQ:PL 0/1:201,90:291:58:58,0,1928 chrXVI 522564 . G A 4110.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.76;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:4110,444,0 chrXVI 522654 . T C 2812 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2845,327,0 chrXVI 522804 . G A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=13.0956;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.79;SB=-1.806e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3737,405,0 chrXVI 523095 . A C 3181 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.24;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3214,366,0 chrXVI 523243 . A G 3043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=144;Dels=0.00;FS=3.293;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.223;QD=21.13;ReadPosRankSum=1.659;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3076,363,0 chrXVI 523433 . C G 3213.98 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=21.14;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3247,366,0 chrXVI 523446 . G A 2906 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=20.32;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2939,321,0 chrXVI 523482 . A G 2885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=168;Dels=0.00;FS=3.018;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-1.420;QD=17.17;ReadPosRankSum=2.405;SB=-1.965e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:2918,336,0 chrXVI 523494 . A G 2775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.898;QD=17.02;ReadPosRankSum=1.689;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:2808,327,0 chrXVI 523583 . C T 2930 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.8170;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.53;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2963,327,0 chrXVI 523692 . T C 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=136;Dels=0.00;FS=3.140;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.433;QD=22.78;ReadPosRankSum=1.681;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3131,363,0 chrXVI 523749 . T C 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=3.200;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=1.199;QD=22.15;ReadPosRankSum=1.703;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2624,297,0 chrXVI 524127 . C T 2476 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.31;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2509,273,0 chrXVI 524220 . C T 3064 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.75;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3097,333,0 chrXVI 524743 . T C 2271 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.94;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2304,258,0 chrXVI 524953 . G A 1745 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9606;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.37;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1778,192,0 chrXVI 524974 . C T 1870 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.80;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1903,210,0 chrXVI 525166 . T A 3084 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.36;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3117,351,0 chrXVI 525272 . A G 3969.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.17;SB=-1.875e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3969,471,0 chrXVI 525308 . G T 4732.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.52;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4732,510,0 chrXVI 525339 . G A 3937.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.1695;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.43;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3937,429,0 chrXVI 525445 . C T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.9131;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.46;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3283,369,0 chrXVI 525509 . G A 3462.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.50;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3462,378,0 chrXVI 525725 . T G 2687 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.33;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2720,321,0 chrXVI 525874 . C T 3586.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3586,390,0 chrXVI 526115 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2827,306,0 chrXVI 526176 . T C 3313.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.66;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3313,363,0 chrXVI 526257 . T C 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=3.655;HaplotypeScore=11.3983;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.926;QD=18.42;ReadPosRankSum=1.643;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2188,261,0 chrXVI 526602 . A G 3426.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.63;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3426,390,0 chrXVI 526767 . A G 4427.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=18.8543;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.39;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,206:207:99:4427,522,0 chrXVI 526806 . T C 3868.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=5.6080;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=18.60;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3868,435,0 chrXVI 526851 . C T 3554.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=191.5585;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=15.45;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:3554,387,0 chrXVI 527307 . T C 4413.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.343;QD=23.47;ReadPosRankSum=1.714;SB=-2.393e+03 GT:AD:DP:GQ:PL 1/1:1,186:188:99:4413,498,0 chrXVI 527344 . C G 3433.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.9801;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.74;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3433,390,0 chrXVI 527456 . A G 3967.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=22.16;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3967,444,0 chrXVI 527480 . C T 4055.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.38;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4055,438,0 chrXVI 527482 . C T 4084.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=20.22;SB=-2.533e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4084,441,0 chrXVI 527574 . T C 3154 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.69;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3187,363,0 chrXVI 527738 . C T 4177.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.34;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,185:187:99:4177,471,0 chrXVI 528025 . C G 3278.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3278,366,0 chrXVI 528382 . T A 3734.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.395;DP=163;Dels=0.00;FS=12.982;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.241;QD=22.91;ReadPosRankSum=3.309;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:4,159:163:99:3734,402,0 chrXVI 528469 . G A 4703.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=18.3342;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.61;SB=-2.546e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4703,507,0 chrXVI 528548 . G A 4728.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.76;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4728,531,0 chrXVI 528593 . T C 3496.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.41;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3496,405,0 chrXVI 529192 . T C 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.01;FS=3.153;HaplotypeScore=6.6880;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=0.793;QD=19.17;ReadPosRankSum=1.598;SB=-1.933e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3023,336,0 chrXVI 529207 . G A 3465.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=0.392;QD=20.38;ReadPosRankSum=1.237;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:1,168:170:99:3465,378,0 chrXVI 529243 . C T 3355.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=19.39;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,170:173:99:3355,369,0 chrXVI 529318 . A G 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=130;Dels=0.00;FS=5.808;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=2.221;QD=21.98;ReadPosRankSum=2.929;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:3,125:130:99:2890,327,0 chrXVI 529371 . A G 3062 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.85;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3095,345,0 chrXVI 529663 . G A 2362 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.4847;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=23.62;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2395,258,0 chrXVI 529749 . T C 2408 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2441,273,0 chrXVI 529905 . T A 3095 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.99;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3128,348,0 chrXVI 530286 . A G 3951.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.84;SB=-1.892e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3951,459,0 chrXVI 530370 . A G 4270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=178;Dels=0.00;FS=3.030;HaplotypeScore=9.6307;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.042;QD=23.99;ReadPosRankSum=2.353;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4270,486,0 chrXVI 530472 . C T 4534.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.74;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4534,495,0 chrXVI 530487 . G A 4298.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.62;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,181:182:99:4298,462,0 chrXVI 530645 . A T 5883.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=249;Dels=0.00;FS=3.435;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.764;QD=23.63;ReadPosRankSum=1.592;SB=-3.025e+03 GT:AD:DP:GQ:PL 1/1:1,248:249:99:5883,648,0 chrXVI 530697 . A G 5109.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=229;Dels=0.00;FS=4.115;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.534;QD=22.31;ReadPosRankSum=1.686;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:1,226:229:99:5109,605,0 chrXVI 530807 . G C 4270.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.1938;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.47;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4270,477,0 chrXVI 531193 . A G 2063 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2096,231,0 chrXVI 531384 . G A 3042 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3075,342,0 chrXVI 531420 . T C 3572.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3572,405,0 chrXVI 531585 . G C 3567.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3567,402,0 chrXVI 531957 . G A 2929 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.36;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2962,324,0 chrXVI 532319 . T C 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=118;Dels=0.00;FS=3.321;HaplotypeScore=7.4767;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.567;QD=20.42;ReadPosRankSum=1.643;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2442,270,0 chrXVI 532633 . C T 2300 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=18.25;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2333,255,0 chrXVI 532642 . T C 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-0.859;QD=19.11;ReadPosRankSum=1.706;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2556,288,0 chrXVI 533286 . A C 3204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.3654;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=2.228;QD=22.10;ReadPosRankSum=2.296;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:2,142:144:99:3237,360,0 chrXVI 533561 . G A 1809 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=22.06;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1842,198,0 chrXVI 533565 . G A 1794 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.11;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1827,198,0 chrXVI 534258 . A T 4049.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.96;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4049,435,0 chrXVI 535594 . G A 2691 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2724,291,0 chrXVI 535766 . A G 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=107;Dels=0.00;FS=3.491;HaplotypeScore=7.6353;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.039;QD=21.06;ReadPosRankSum=1.666;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,104:107:99:2286,255,0 chrXVI 535979 . G T 2436 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.56;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2469,264,0 chrXVI 536180 . T C 2356 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0369;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.10;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2389,267,0 chrXVI 536232 . A C 2111 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.50;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2144,246,0 chrXVI 536238 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=18.95;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2117,228,0 chrXVI 536719 . C T 77.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.243;DP=197;Dels=0.00;FS=1.606;HaplotypeScore=13.4937;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-6.660;QD=0.39;ReadPosRankSum=-4.420;SB=-1.065e+02 GT:AD:DP:GQ:PL 1/1:160,37:197:12:110,12,0 chrXVI 536735 . T C 399.79 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.411;DP=176;Dels=0.00;FS=10.156;HaplotypeScore=21.6347;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-6.633;QD=2.27;ReadPosRankSum=2.789;SB=-3.328e+02 GT:AD:DP:GQ:PL 1/1:110,66:176:10:432,10,0 chrXVI 536756 . C T 1283 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.03;FS=0.000;HaplotypeScore=34.4357;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=8.85;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,110:141:99:1316,144,0 chrXVI 536785 . C G 3220.05 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.2844;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=15.48;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,205:208:99:3253,372,0 chrXVI 537057 . T C 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;DP=160;Dels=0.00;FS=9.935;HaplotypeScore=15.0784;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.425;QD=19.79;ReadPosRankSum=2.403;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3199,357,0 chrXVI 537122 . A G 2642 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.97;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2675,309,0 chrXVI 537410 . G A 3370.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.60;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3370,366,0 chrXVI 537914 . G A 3087 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3120,336,0 chrXVI 537975 . G C 2885 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.53;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,130:134:99:2918,330,0 chrXVI 538056 . A T 2925 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.40;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2958,321,0 chrXVI 538398 . A G 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=3.047;HaplotypeScore=5.9544;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.899;QD=21.61;ReadPosRankSum=2.346;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2604,297,0 chrXVI 538748 . A G 3578.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.09;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3578,417,0 chrXVI 538784 . A G 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=133;Dels=0.00;FS=2.988;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.213;QD=20.53;ReadPosRankSum=2.339;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2763,321,0 chrXVI 539109 . G A 3336.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=21.52;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3336,357,0 chrXVI 539116 . A G 3005 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=20.17;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3038,345,0 chrXVI 539185 . A G 2317 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=17.82;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2350,261,0 chrXVI 539194 . G A 2630 SnpCluster AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=19.20;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2663,291,0 chrXVI 539197 . A G 2518 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=19.52;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2551,288,0 chrXVI 539199 . C T 2570 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=19.18;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2603,288,0 chrXVI 539281 . A G 3738.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=23.22;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3738,420,0 chrXVI 539795 . T A 4185.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.2246;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4185,453,0 chrXVI 539864 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.42;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3430,399,0 chrXVI 539891 . G C 3534.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3804;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.81;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3534,393,0 chrXVI 539931 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.90;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3448,402,0 chrXVI 540158 . C T 3853.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.49;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3853,417,0 chrXVI 540177 . G A 3645.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.07;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3645,399,0 chrXVI 540311 . C G 4077.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4077,468,0 chrXVI 540419 . A G 2181 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.72;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2214,243,0 chrXVI 540443 . C T 2367 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.54;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2400,258,0 chrXVI 540521 . A G 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=123;Dels=0.00;FS=2.879;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.817;QD=19.79;ReadPosRankSum=2.389;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:2467,285,0 chrXVI 540732 . A G 2195 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2228,252,0 chrXVI 540893 . G A 2115 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.99;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2148,234,0 chrXVI 541043 . G A 2432 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2465,267,0 chrXVI 541191 . G A 3301.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3301,366,0 chrXVI 541340 . T C 3462.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3462,393,0 chrXVI 541481 . A G 2918 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.70;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2951,342,0 chrXVI 542024 . A G 2781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=123;Dels=0.00;FS=5.956;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.777;QD=22.61;ReadPosRankSum=2.926;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:3,119:123:99:2814,321,0 chrXVI 542071 . C T 2456 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=20.99;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2489,273,0 chrXVI 542076 . G T 2345 SnpCluster AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=19.22;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2378,261,0 chrXVI 542081 . C T 2467 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=19.74;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2500,273,0 chrXVI 542211 . G A 4889.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.45;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4889,531,0 chrXVI 542291 . T C 3678.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=21.89;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3678,417,0 chrXVI 542298 . T C 3679.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=21.27;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3679,417,0 chrXVI 542310 . C T 3701.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=21.15;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3701,408,0 chrXVI 542463 . A G 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.120;DP=164;Dels=0.00;FS=2.911;HaplotypeScore=6.6500;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.577;QD=20.20;ReadPosRankSum=2.330;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3313,372,0 chrXVI 543150 . C T 2486 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.37;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2519,273,0 chrXVI 543224 . C G 2004 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.86;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2037,228,0 chrXVI 543428 . C T 3310.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4537;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.48;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3310,363,0 chrXVI 543686 . A G 2887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=-1.086;QD=21.54;ReadPosRankSum=1.706;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2920,327,0 chrXVI 543700 . C G 2631 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=19.49;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2664,294,0 chrXVI 543720 . T C 2664 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=20.03;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2697,303,0 chrXVI 543850 . A C 3748.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.6528;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=24.99;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3748,411,0 chrXVI 543909 . T A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=21.99;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3298,357,0 chrXVI 543911 . T A 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=2.920;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;MQRankSum=-0.968;QD=21.99;ReadPosRankSum=2.385;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3321,363,0 chrXVI 543937 . A G 3610.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=175;Dels=0.00;FS=11.864;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.040;QD=20.63;ReadPosRankSum=2.925;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:3,172:175:99:3610,408,0 chrXVI 544071 . T C 3793.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=3.287;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.411;QD=23.41;ReadPosRankSum=1.689;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3793,429,0 chrXVI 544271 . T G 3614.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=21.90;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3614,426,0 chrXVI 544371 . A G 4270.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-1.021;QD=21.90;ReadPosRankSum=1.679;SB=-2.196e+03 GT:AD:DP:GQ:PL 1/1:1,194:195:99:4270,498,0 chrXVI 544388 . C G 3913.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=20.38;SB=-2.127e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:3913,429,0 chrXVI 544433 . C T 2145 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;QD=15.11;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2178,249,0 chrXVI 544452 . G A 1888 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=118.9951;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;QD=14.09;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:1921,210,0 chrXVI 544471 . A G 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=3.235;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;MQRankSum=0.237;QD=16.21;ReadPosRankSum=1.682;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2303,261,0 chrXVI 544608 . G A 4326.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=14.4549;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=23.51;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4326,468,0 chrXVI 544798 . A T 4529.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.88;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4529,498,0 chrXVI 544805 . C T 4524.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=4.8499;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=21.04;SB=-2.868e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4524,489,0 chrXVI 545158 . T C 2758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=4.170;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.704;QD=21.55;ReadPosRankSum=1.705;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2791,318,0 chrXVI 545401 . T C 3037 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.91;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3070,342,0 chrXVI 545431 . A G 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.015;QD=20.06;ReadPosRankSum=1.674;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2460,285,0 chrXVI 545469 . G T 2772 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.0767;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.84;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2805,306,0 chrXVI 545480 . A G 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=141;Dels=0.00;FS=8.168;HaplotypeScore=5.5206;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-0.296;QD=17.92;ReadPosRankSum=2.551;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:4,135:141:99:2560,291,0 chrXVI 545488 . G C 2455 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=18.74;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2488,288,0 chrXVI 545566 . C T 2630 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.92;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2663,300,0 chrXVI 545612 . A T 2674 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=22.10;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2707,294,0 chrXVI 545616 . A G 2701 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1659;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=22.51;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2734,303,0 chrXVI 545698 . A T 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=3.352;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.975;QD=24.32;ReadPosRankSum=1.674;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2927,318,0 chrXVI 545791 . T C 2537 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.8642;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.25;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2570,288,0 chrXVI 546175 . T G 3630.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.2060;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.967;QD=22.13;ReadPosRankSum=1.711;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3630,432,0 chrXVI 546628 . C T 2849 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=23.55;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2882,321,0 chrXVI 546673 . T C 2135 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.53;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2168,249,0 chrXVI 546757 . A G 3186 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.43;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3219,369,0 chrXVI 546814 . C T 3050 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.64;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3083,333,0 chrXVI 546895 . C A 2127 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=19.88;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2160,237,0 chrXVI 546903 . C T 2043 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=20.43;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2076,225,0 chrXVI 546904 . T C 1949 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=102;Dels=0.00;FS=2.946;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.133;QD=19.11;ReadPosRankSum=2.401;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1982,225,0 chrXVI 547042 . C T 3154 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.83;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3187,351,0 chrXVI 547102 . A G 3648.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.82;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3648,411,0 chrXVI 547183 . T C 3973.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.65;SB=-2.115e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3973,453,0 chrXVI 547438 . G A 3695.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.74;SB=-2.130e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:3695,399,0 chrXVI 547555 . T G 4381.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=8.6499;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.48;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,201:204:99:4381,516,0 chrXVI 547624 . A G 3869.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.47;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3869,432,0 chrXVI 547639 . G A 3947.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.99;SB=-2.399e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3947,429,0 chrXVI 547663 . A G 3596.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.689;DP=197;Dels=0.00;FS=9.300;HaplotypeScore=11.5853;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.026;QD=18.25;ReadPosRankSum=2.944;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:3,194:197:99:3596,411,0 chrXVI 547918 . G A 4323.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.75;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4323,477,0 chrXVI 548026 . A G 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.734;DP=126;Dels=0.00;FS=5.827;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.137;QD=20.34;ReadPosRankSum=2.944;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:3,122:126:99:2596,288,0 chrXVI 548706 . A G 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=143;Dels=0.00;FS=3.041;HaplotypeScore=8.7160;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.571;QD=19.95;ReadPosRankSum=2.379;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:2,138:143:99:2886,342,0 chrXVI 549008 . T C 3420.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.4318;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.21;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3420,387,0 chrXVI 549254 . A G 3783.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=170;Dels=0.00;FS=2.808;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.124;QD=22.25;ReadPosRankSum=2.421;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:2,167:170:99:3783,420,0 chrXVI 549310 . G C 3780.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=5.2569;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=22.11;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3780,432,0 chrXVI 549316 . C T 3800.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.8367;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.049;QD=21.47;ReadPosRankSum=0.386;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3800,411,0 chrXVI 549520 . G A 3271.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.72;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3271,354,0 chrXVI 549578 . C T 3416.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.18;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3416,372,0 chrXVI 549673 . G A 3049 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.92;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3082,339,0 chrXVI 549693 . A T 3174 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.67;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3207,351,0 chrXVI 549778 . A G 3606.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=13.1457;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.12;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3606,402,0 chrXVI 549817 . A G 3011 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.47;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3044,342,0 chrXVI 549877 . G A 2574 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.98;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2607,282,0 chrXVI 549906 . G C 2556 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.23;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2589,291,0 chrXVI 550018 . G C 2647 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2680,315,0 chrXVI 550102 . T G 2334 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.03;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2367,282,0 chrXVI 550270 . A T 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.903;QD=23.36;ReadPosRankSum=1.673;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2789,306,0 chrXVI 550438 . G A 2361 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2394,261,0 chrXVI 550520 . G A 2114 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2147,231,0 chrXVI 550572 . A G 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.557;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.801;QD=23.03;ReadPosRankSum=1.695;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2175,243,0 chrXVI 550723 . C G 3202 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.35;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,146:150:99:3235,381,0 chrXVI 550760 . T C 4260.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.0532;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.93;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4260,486,0 chrXVI 550866 . G A 2515 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=17.47;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2548,288,0 chrXVI 550890 . C T 2725 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.5923;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=18.17;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2758,303,0 chrXVI 550926 . A G 2913 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=18.32;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2946,342,0 chrXVI 551208 . T A 3349.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.26;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3349,369,0 chrXVI 551232 . C T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.36;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3808,414,0 chrXVI 551484 . T C 4160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=214;Dels=0.00;FS=10.459;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.807;QD=19.44;ReadPosRankSum=2.920;SB=-2.269e+03 GT:AD:DP:GQ:PL 1/1:3,210:214:99:4160,483,0 chrXVI 552359 . G A 3009 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.6122;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.75;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3042,339,0 chrXVI 552585 . C T 4201.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.4539;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.28;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4201,456,0 chrXVI 552707 . T A 3754.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=3.434;HaplotypeScore=15.1697;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.309;QD=21.70;ReadPosRankSum=1.692;SB=-1.993e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3754,420,0 chrXVI 552796 . T C 4849.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.65;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4849,537,0 chrXVI 552914 . A C 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.1369;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.094;QD=22.12;ReadPosRankSum=1.687;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:1,151:153:99:3384,384,0 chrXVI 552953 . A G 3448.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=156;Dels=0.00;FS=5.539;HaplotypeScore=6.2611;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.318;QD=22.10;ReadPosRankSum=2.916;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:3,152:156:99:3448,402,0 chrXVI 553071 . T C 2806 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.0775;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.35;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2839,327,0 chrXVI 553081 . G A 3022 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.0169;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=19.13;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3055,333,0 chrXVI 553236 . A G 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.292;DP=147;Dels=0.00;FS=8.863;HaplotypeScore=13.0493;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.113;QD=21.78;ReadPosRankSum=3.304;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:4,143:147:99:3235,366,0 chrXVI 553270 . T G 3087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=142;Dels=0.00;FS=4.199;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=1.269;QD=21.74;ReadPosRankSum=1.708;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3120,348,0 chrXVI 553411 . T A 2395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.738;QD=20.83;ReadPosRankSum=1.702;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2428,261,0 chrXVI 553455 . T C 2914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=138;Dels=0.00;FS=2.929;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.226;QD=21.12;ReadPosRankSum=2.395;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:2947,339,0 chrXVI 553465 . G A 3218.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.82;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3251,354,0 chrXVI 553603 . C T 3783.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.4468;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.50;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3783,408,0 chrXVI 553894 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3032,324,0 chrXVI 554287 . A G 3841.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=13.3433;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.43;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:3841,453,0 chrXVI 554408 . A G 4014.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=185;Dels=0.00;FS=2.932;HaplotypeScore=12.6982;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.086;QD=21.70;ReadPosRankSum=2.409;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:2,180:185:99:4014,441,0 chrXVI 554518 . T C 3678.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=21.26;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,169:173:99:3678,411,0 chrXVI 554526 . T C 3517.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.21;SB=-2.128e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3517,408,0 chrXVI 554599 . A G 3404.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=162;Dels=0.00;FS=7.599;HaplotypeScore=12.0584;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.098;QD=21.01;ReadPosRankSum=2.404;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:3404,399,0 chrXVI 554689 . G A 3831.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.1092;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.67;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3831,432,0 chrXVI 554989 . T C 4052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=173;Dels=0.00;FS=3.036;HaplotypeScore=14.3476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.238;QD=23.42;ReadPosRankSum=2.421;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:2,168:173:99:4052,453,0 chrXVI 555444 . T C 2082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.150;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.331;QD=21.92;ReadPosRankSum=1.659;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2115,249,0 chrXVI 555465 . C G 2166 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.56;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2199,249,0 chrXVI 555825 . G A 541 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=21.64;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:63:574,63,0 chrXVI 555945 . G A 269 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=16.81;SB=-1.073e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:33:302,33,0 chrXVI 556002 . A G 85.26 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:118,15,0 chrXVI 556032 . A T 327 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.57;MQ0=0;QD=11.68;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:39:360,39,0 chrXVI 556037 . A T 327 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=10.22;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:39:360,39,0 chrXVI 556046 . T G 391 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;QD=10.29;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:48:424,48,0 chrXVI 556165 . G T 1150 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=21.70;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1183,129,0 chrXVI 556406 . T C 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.619;DP=142;Dels=0.00;FS=8.052;HaplotypeScore=7.7303;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=1.472;QD=18.03;ReadPosRankSum=3.520;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:5,137:142:99:2593,297,0 chrXVI 556411 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.02;FS=0.000;HaplotypeScore=8.5190;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=18.76;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2735,306,0 chrXVI 556460 . T C 2786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=149;Dels=0.00;FS=2.578;HaplotypeScore=9.6938;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-1.596;QD=18.70;ReadPosRankSum=2.925;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:3,144:149:99:2819,315,0 chrXVI 556511 . G A 3434.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3434,372,0 chrXVI 556715 . A G 5215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=237;Dels=0.00;FS=6.775;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.956;QD=22.00;ReadPosRankSum=2.429;SB=-2.779e+03 GT:AD:DP:GQ:PL 1/1:2,233:237:99:5215,603,0 chrXVI 556778 . C A 4083.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4083,450,0 chrXVI 556980 . C A 3926.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.1832;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.65;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3926,420,0 chrXVI 557883 . G A 1989 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=22.35;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2022,222,0 chrXVI 558028 . T C 1093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=13.2763;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-1.244;QD=13.84;ReadPosRankSum=1.555;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1126,129,0 chrXVI 558145 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.92;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2440,267,0 chrXVI 558762 . C T 2940 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2973,330,0 chrXVI 558908 . C T 4522.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=9.8177;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.93;SB=-2.201e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4522,507,0 chrXVI 559232 . C T 4992.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=17.7830;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.44;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4992,537,0 chrXVI 559365 . T A 3152 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3185,345,0 chrXVI 559952 . G A 1465 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.54;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1498,162,0 chrXVI 559956 . G A 1389 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.43;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1422,156,0 chrXVI 560045 . G T 1685 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=21.06;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1718,192,0 chrXVI 560053 . G A 1608 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.73;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1641,180,0 chrXVI 560144 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=44.1674;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=0.38;SB=-4.308e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:6:51,6,0 chrXVI 560312 . C T 1156 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;QD=22.23;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1189,129,0 chrXVI 560326 . C T 1012 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.69;MQ0=0;QD=21.53;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1045,114,0 chrXVI 560337 . T C 1165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=57;Dels=0.00;FS=11.601;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;MQRankSum=0.232;QD=20.44;ReadPosRankSum=2.662;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:3,54:57:99:1198,138,0 chrXVI 560461 . G A 1578 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;QD=22.23;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1611,177,0 chrXVI 560480 . C T 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.239;DP=58;Dels=0.00;FS=18.884;HaplotypeScore=10.4850;MLEAC=1;MLEAF=0.500;MQ=30.38;MQ0=2;MQRankSum=-0.557;QD=0.29;ReadPosRankSum=3.778;SB=-8.921e+00 GT:AD:DP:GQ:PL 0/1:46,9:58:47:47,0,628 chrXVI 560502 . T C 76.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.505;DP=29;Dels=0.00;FS=27.711;HaplotypeScore=9.4723;MLEAC=1;MLEAF=0.500;MQ=23.04;MQ0=6;MQRankSum=0.735;QD=2.62;ReadPosRankSum=3.536;SB=-2.550e+01 GT:AD:DP:GQ:PL 0/1:23,6:29:85:106,0,85 chrXVI 560589 . G A 167.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;DP=29;Dels=0.00;FS=16.107;HaplotypeScore=17.7202;MLEAC=1;MLEAF=0.500;MQ=20.81;MQ0=11;MQRankSum=-0.796;QD=5.76;ReadPosRankSum=-0.140;SB=-1.334e-02 GT:AD:DP:GQ:PL 0/1:14,15:29:25:197,0,25 chrXVI 560700 . T G 325.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600;DP=60;Dels=0.00;FS=102.844;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=22.59;MQ0=8;MQRankSum=5.579;QD=5.42;ReadPosRankSum=-2.165;SB=-1.366e-03 GT:AD:DP:GQ:PL 0/1:39,21:60:99:355,0,271 chrXVI 560712 . T A,G 470.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.798;DP=63;Dels=0.00;FS=21.087;HaplotypeScore=1.8255;MLEAC=1,1;MLEAF=0.500,0.500;MQ=22.34;MQ0=9;MQRankSum=0.180;QD=7.46;ReadPosRankSum=-0.747;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/2:11,23,29:63:99:530,292,355,158,0,202 chrXVI 560717 . T C 148.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.926;DP=64;Dels=0.00;FS=103.148;HaplotypeScore=8.0848;MLEAC=1;MLEAF=0.500;MQ=22.19;MQ0=9;MQRankSum=-2.964;QD=2.31;ReadPosRankSum=-2.087;SB=-8.884e-01 GT:AD:DP:GQ:PL 0/1:42,22:64:99:178,0,456 chrXVI 560721 . G T 157.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.687;DP=61;Dels=0.00;FS=92.654;HaplotypeScore=8.0848;MLEAC=1;MLEAF=0.500;MQ=22.59;MQ0=9;MQRankSum=-3.154;QD=2.57;ReadPosRankSum=-3.078;SB=-4.732e-01 GT:AD:DP:GQ:PL 0/1:42,19:61:99:187,0,448 chrXVI 560736 . T A 107.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;DP=54;Dels=0.00;FS=60.413;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.09;MQ0=9;MQRankSum=-2.047;QD=1.98;ReadPosRankSum=-4.688;SB=0.965 GT:AD:DP:GQ:PL 0/1:43,11:54:99:137,0,494 chrXVI 560758 . A G 338.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.288;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=24.81;MQ0=9;MQRankSum=0.031;QD=8.67;ReadPosRankSum=-1.739;SB=-1.101e-03 GT:AD:DP:GQ:PL 0/1:8,31:39:26:368,0,26 chrXVI 560767 . C T 170.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.59;MQ0=5;MQRankSum=0.249;QD=5.31;ReadPosRankSum=-1.883;SB=-6.433e-03 GT:AD:DP:GQ:PL 0/1:4,27:32:44:200,0,44 chrXVI 560808 . T A 32.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=7;Dels=0.00;FS=4.771;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=36.37;MQ0=0;MQRankSum=-1.380;QD=4.58;ReadPosRankSum=0.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:3,4:7:16:62,0,16 chrXVI 560811 . C A 34.08 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=41.72;MQ0=0;MQRankSum=0.736;QD=5.68;ReadPosRankSum=-0.736;SB=0.060 GT:AD:DP:GQ:PL 0/1:1,5:6:15:64,0,15 chrXVI 560854 . G A 931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.778;DP=69;Dels=0.00;FS=3.337;HaplotypeScore=2.7753;MLEAC=2;MLEAF=1.00;MQ=38.96;MQ0=0;MQRankSum=0.979;QD=13.49;ReadPosRankSum=1.531;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:964,108,0 chrXVI 561004 . C T 1512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;MQRankSum=-0.403;QD=20.43;ReadPosRankSum=1.305;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1545,149,0 chrXVI 561045 . A T 1496 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=18.47;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1529,171,0 chrXVI 561052 . T C 1461 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=18.49;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1494,171,0 chrXVI 561225 . C T 1505 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=23.15;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1538,165,0 chrXVI 561239 . A T 1512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=3.448;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-1.495;QD=20.71;ReadPosRankSum=1.637;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1545,171,0 chrXVI 561360 . G A 2310 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.00;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2343,258,0 chrXVI 561362 . T C 2240 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.93;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2273,255,0 chrXVI 561434 . T A 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=7.6458;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-0.921;QD=21.67;ReadPosRankSum=1.695;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2135,234,0 chrXVI 561549 . C T 2713 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.59;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2746,297,0 chrXVI 561579 . A G 2491 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.29;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,112:117:99:2524,285,0 chrXVI 561671 . T A 3724.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=166;Dels=0.00;FS=5.728;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.969;QD=22.43;ReadPosRankSum=2.847;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:3,163:166:99:3724,405,0 chrXVI 561816 . C A 3954.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.54;SB=-2.076e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3954,426,0 chrXVI 562779 . A G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=120;Dels=0.00;FS=7.144;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;MQRankSum=-1.240;QD=22.92;ReadPosRankSum=2.388;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2783,318,0 chrXVI 562839 . T C 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.7934;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.491;QD=21.59;ReadPosRankSum=1.629;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2926,330,0 chrXVI 563274 . A G 5263.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=255;Dels=0.00;FS=4.929;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-1.141;QD=20.64;ReadPosRankSum=1.705;SB=-2.037e+03 GT:AD:DP:GQ:PL 1/1:2,251:255:99:5263,594,0 chrXVI 563280 . A G 4720.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=9.2855;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.34;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:4720,554,0 chrXVI 563424 . A G 5052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=9.6521;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.137;QD=20.88;ReadPosRankSum=1.660;SB=-1.824e+03 GT:AD:DP:GQ:PL 1/1:1,240:242:99:5052,570,0 chrXVI 563468 . A C 5018.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=247;Dels=0.00;FS=2.470;HaplotypeScore=15.7422;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.180;QD=20.32;ReadPosRankSum=2.963;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:3,243:247:99:5018,576,0 chrXVI 564097 . G A 3723.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.2887;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=24.33;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3723,402,0 chrXVI 564521 . A C 3954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.591;DP=172;Dels=0.00;FS=12.149;HaplotypeScore=17.0590;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-0.611;QD=22.99;ReadPosRankSum=3.700;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:5,167:172:99:3954,447,0 chrXVI 564703 . T C 2918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=144;Dels=0.00;FS=8.950;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.978;QD=20.26;ReadPosRankSum=2.415;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:2,140:144:99:2951,351,0 chrXVI 564724 . T C 2918 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.99;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2951,336,0 chrXVI 564925 . C T 2113 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=19.39;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2146,231,0 chrXVI 564937 . G A 2022 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.63;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2055,222,0 chrXVI 565119 . T A 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=114;Dels=0.00;FS=6.372;HaplotypeScore=9.7086;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.378;QD=22.45;ReadPosRankSum=2.363;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2592,288,0 chrXVI 565170 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=25.11;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2996,327,0 chrXVI 565246 . A T 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.756;DP=128;Dels=0.00;FS=12.410;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.433;QD=24.04;ReadPosRankSum=2.882;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:3110,339,0 chrXVI 565328 . C T 4240.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=26.01;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4240,462,0 chrXVI 565413 . G A 3025 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.61;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3058,333,0 chrXVI 565500 . T C 2732 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.86;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2765,327,0 chrXVI 565561 . A G 2761 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=21.57;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2794,321,0 chrXVI 565571 . C T 2832 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=21.95;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2865,312,0 chrXVI 565601 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=18.75;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2189,234,0 chrXVI 565603 . T A 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=113;Dels=0.00;FS=2.991;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=-1.840;QD=18.41;ReadPosRankSum=2.384;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2113,231,0 chrXVI 565677 . C A 1450 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=71.5005;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=15.76;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1483,165,0 chrXVI 565783 . T A 3108 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3340;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.52;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3141,336,0 chrXVI 566078 . T C 2852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.896;QD=19.67;ReadPosRankSum=1.708;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:2885,330,0 chrXVI 566096 . T C 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.270;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.176;QD=18.58;ReadPosRankSum=1.682;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2634,303,0 chrXVI 566123 . G A 2367 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=18.64;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2400,261,0 chrXVI 566170 . A T 2837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.8459;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.534;QD=21.33;ReadPosRankSum=1.654;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2870,309,0 chrXVI 566518 . A C 3495.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.10;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3495,402,0 chrXVI 566571 . A G 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=133;Dels=0.00;FS=3.031;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.197;QD=22.27;ReadPosRankSum=2.412;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:2,129:133:99:2995,339,0 chrXVI 566724 . A G 3286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.010;QD=22.82;ReadPosRankSum=1.708;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3286,369,0 chrXVI 567069 . G A 3458.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.45;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3458,378,0 chrXVI 567139 . T G 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.356;DP=164;Dels=0.00;FS=2.856;HaplotypeScore=17.9286;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.727;QD=21.55;ReadPosRankSum=0.457;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:2,162:164:99:3535,385,0 chrXVI 567779 . C T 3144 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.12;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3177,354,0 chrXVI 568012 . T G 3451.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=0.944;QD=20.42;ReadPosRankSum=1.711;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:1,166:169:99:3451,396,0 chrXVI 568030 . C T 3142 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.2215;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.37;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:3175,345,0 chrXVI 568231 . A C 4245.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=12.2277;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.77;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4245,477,0 chrXVI 568268 . C T 3687.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.2082;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=21.07;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:3687,402,0 chrXVI 568274 . T A 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=181;Dels=0.00;FS=2.751;HaplotypeScore=5.7075;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.421;QD=19.35;ReadPosRankSum=2.394;SB=-1.683e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3503,393,0 chrXVI 568866 . A G 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.6094;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.142;QD=20.80;ReadPosRankSum=1.710;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3349,378,0 chrXVI 568979 . G T 2378 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.86;MQ0=0;QD=17.88;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2411,261,0 chrXVI 569089 . C A 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;MQRankSum=-0.840;QD=16.37;ReadPosRankSum=-0.761;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2210,240,0 chrXVI 569106 . G A 2411 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=17.47;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2444,264,0 chrXVI 569117 . T C 2645 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.76;SB=-1.632e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2678,300,0 chrXVI 569521 . G C 3537.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=17.3397;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.31;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3537,405,0 chrXVI 569684 . G C 2681 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.57;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:2714,303,0 chrXVI 569693 . C A 2853 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.45;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2886,312,0 chrXVI 569981 . G A 2772 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.83;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2805,306,0 chrXVI 570048 . C T 3125 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=23.50;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3158,339,0 chrXVI 570118 . G A 2350 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=21.56;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2383,258,0 chrXVI 570121 . A T 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=0.252;QD=21.62;ReadPosRankSum=1.606;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2411,261,0 chrXVI 570140 . C A 2400 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=21.82;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2433,270,0 chrXVI 570251 . G A 2824 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.77;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2857,312,0 chrXVI 570266 . C T 2513 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.48;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2546,276,0 chrXVI 570287 . A G 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.590;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=1.110;QD=20.42;ReadPosRankSum=1.705;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2667,300,0 chrXVI 570404 . G A 2162 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.83;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2195,249,0 chrXVI 570409 . G C 2127 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.88;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2160,243,0 chrXVI 570452 . T C 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=118;Dels=0.00;FS=2.965;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.498;QD=19.19;ReadPosRankSum=2.386;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:2,114:118:99:2297,264,0 chrXVI 570943 . T C 2763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.386;DP=123;Dels=0.00;FS=13.614;HaplotypeScore=6.7095;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.490;QD=22.46;ReadPosRankSum=3.386;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:4,119:123:99:2796,327,0 chrXVI 570989 . T C 2900 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.20;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2933,330,0 chrXVI 571076 . C T 2323 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.55;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2356,264,0 chrXVI 571100 . A G 2033 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.40;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2066,237,0 chrXVI 571193 . G A 2929 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.36;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2962,327,0 chrXVI 571220 . A G 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=3.150;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.935;QD=21.81;ReadPosRankSum=1.705;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2781,315,0 chrXVI 571277 . A G 1696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.161;QD=19.72;ReadPosRankSum=1.692;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1729,195,0 chrXVI 571382 . A G 2514 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.86;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2547,294,0 chrXVI 571446 . T A 2880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.7105;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-1.022;QD=24.20;ReadPosRankSum=1.673;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2913,312,0 chrXVI 571582 . A G 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=4.314;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.962;QD=22.96;ReadPosRankSum=1.706;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,134:137:99:3179,360,0 chrXVI 571664 . A T 4159.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=169;Dels=0.00;FS=3.928;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=1.196;QD=24.61;ReadPosRankSum=1.650;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:4159,459,0 chrXVI 571690 . T C 4241.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.96;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4241,477,0 chrXVI 571736 . C T 3867.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.4204;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=23.87;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3867,423,0 chrXVI 571905 . T C 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=3.277;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;MQRankSum=-0.034;QD=22.01;ReadPosRankSum=1.709;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3346,378,0 chrXVI 571918 . A T 3055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=139;Dels=0.00;FS=6.115;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=0;MQRankSum=-1.573;QD=21.98;ReadPosRankSum=2.950;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:3,136:139:99:3088,339,0 chrXVI 571946 . C T 1867 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.92;MQ0=0;QD=16.09;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1900,219,0 chrXVI 571959 . C T 1584 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.09;MQ0=0;QD=14.14;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1617,189,0 chrXVI 571973 . T C 1301 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.20;MQ0=0;QD=12.16;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1334,159,0 chrXVI 571977 . G A 1128 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.17;MQ0=0;QD=11.17;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1161,138,0 chrXVI 571989 . A T 990 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.63;MQ0=0;QD=11.38;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1023,120,0 chrXVI 572003 . A G 716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=79;Dels=0.00;FS=2.909;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.28;MQ0=0;MQRankSum=1.420;QD=9.06;ReadPosRankSum=2.388;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:90:749,90,0 chrXVI 572038 . A T 673 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.700;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;MQRankSum=2.859;QD=10.52;ReadPosRankSum=2.890;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:3,61:64:78:706,78,0 chrXVI 572041 . C A 672 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=51.3566;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=10.67;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:78:705,78,0 chrXVI 572047 . A T 533 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=54.3393;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;MQRankSum=-1.353;QD=8.46;ReadPosRankSum=2.372;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:63:566,63,0 chrXVI 572056 . T G 617 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=44.3500;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=9.64;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:75:650,75,0 chrXVI 572060 . A G 520 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.32;MQ0=0;MQRankSum=1.185;QD=9.12;ReadPosRankSum=1.672;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:63:553,63,0 chrXVI 572061 . C G 539 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=9.62;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:63:572,63,0 chrXVI 572063 . C T 539 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=9.62;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:63:572,63,0 chrXVI 572064 . C T 557 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.97;MQ0=0;QD=9.60;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:66:590,66,0 chrXVI 572075 . T C 699 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.36;MQ0=0;QD=8.96;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:84:732,84,0 chrXVI 572076 . T C 699 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=83;Dels=0.00;FS=17.757;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;MQRankSum=-2.501;QD=8.42;ReadPosRankSum=2.867;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:84:732,84,0 chrXVI 572077 . T C 737 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.86;MQ0=0;QD=8.77;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:87:770,87,0 chrXVI 572106 . A C 1383 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;QD=10.17;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:1416,165,0 chrXVI 572116 . A T 1756 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.31;MQ0=0;QD=11.86;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:1789,204,0 chrXVI 572246 . A G 1055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.145;DP=97;Dels=0.00;FS=21.117;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.00;MQ0=0;MQRankSum=-0.267;QD=10.88;ReadPosRankSum=2.348;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1088,132,0 chrXVI 572250 . T C 1084 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.16;MQ0=0;QD=11.66;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1117,129,0 chrXVI 572260 . C T 1251 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.18;MQ0=0;QD=11.58;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1284,147,0 chrXVI 572263 . T C 1140 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.68;MQ0=0;MQRankSum=-1.373;QD=10.75;ReadPosRankSum=1.667;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1173,135,0 chrXVI 572268 . C A 1169 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.73;MQ0=0;QD=11.13;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1202,138,0 chrXVI 572357 . T C 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=3.582;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=0.736;QD=19.81;ReadPosRankSum=1.708;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2925,339,0 chrXVI 573140 . T C 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.0659;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.713;QD=22.79;ReadPosRankSum=1.707;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3132,354,0 chrXVI 573259 . C T 4813.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.95;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4813,528,0 chrXVI 573299 . G A 4060.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.88;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4060,441,0 chrXVI 573428 . A G 3643.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=176;Dels=0.00;FS=9.576;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.018;QD=20.70;ReadPosRankSum=2.924;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:3,169:176:99:3643,429,0 chrXVI 573515 . T C 3128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.785;QD=20.85;ReadPosRankSum=1.686;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3161,369,0 chrXVI 573602 . T C 2677 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.2998;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=16.94;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2710,312,0 chrXVI 573609 . A G 2355 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.9404;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=15.70;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2388,279,0 chrXVI 573711 . G A 4275.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.74;SB=-2.349e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4275,462,0 chrXVI 573974 . C T 3581.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.8647;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.97;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3581,399,0 chrXVI 574042 . A G 3273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=1.253;QD=21.53;ReadPosRankSum=1.709;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3273,375,0 chrXVI 574108 . A T 3403.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.4009;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;MQRankSum=-0.144;QD=20.02;ReadPosRankSum=1.222;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:3403,375,0 chrXVI 574109 . T C 3350.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.569;DP=171;Dels=0.00;FS=3.328;HaplotypeScore=4.6018;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-0.245;QD=19.59;ReadPosRankSum=-1.304;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:1,169:171:99:3350,387,0 chrXVI 574122 . G A 3132 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=19.33;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3165,348,0 chrXVI 574147 . C T 3362.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.01;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3362,363,0 chrXVI 574276 . A C 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.098;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-1.181;QD=21.55;ReadPosRankSum=2.059;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,124:127:99:2770,296,0 chrXVI 574412 . T C 4339.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.886;QD=22.14;ReadPosRankSum=2.399;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:2,194:196:99:4339,504,0 chrXVI 574820 . A G 4273.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=203;Dels=0.00;FS=2.873;HaplotypeScore=8.4408;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.127;QD=21.05;ReadPosRankSum=2.413;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:4273,483,0 chrXVI 575003 . T C 2531 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.63;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2564,303,0 chrXVI 575320 . G A 2057 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.36;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2090,225,0 chrXVI 575390 . G T 2325 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.93;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2358,264,0 chrXVI 575496 . T C 2829 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.80;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2862,318,0 chrXVI 575601 . A G 1814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-1.732;QD=20.61;ReadPosRankSum=1.693;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1847,210,0 chrXVI 575759 . C T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.2885;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.68;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3283,354,0 chrXVI 575828 . G C 1107 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=34.7265;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=14.57;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1140,132,0 chrXVI 575846 . C A 165.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;DP=102;Dels=0.00;FS=3.428;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=38.95;MQ0=0;MQRankSum=0.190;QD=1.62;ReadPosRankSum=-5.942;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/1:81,21:102:99:195,0,278 chrXVI 575847 . T C 158.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.793;DP=104;Dels=0.00;FS=0.989;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=39.46;MQ0=0;MQRankSum=-1.514;QD=1.52;ReadPosRankSum=-5.325;SB=-9.701e+01 GT:AD:DP:GQ:PL 0/1:85,19:104:99:188,0,328 chrXVI 575871 . T C 1235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;MQRankSum=-1.052;QD=11.03;ReadPosRankSum=1.670;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1268,147,0 chrXVI 575912 . C T 2975 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.37;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3008,318,0 chrXVI 576040 . C A 2214 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=22.14;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2247,243,0 chrXVI 576041 . G T 2194 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=21.94;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2227,243,0 chrXVI 576287 . C G 2616 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=24.45;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2649,300,0 chrXVI 576345 . A T 2416 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=97.6173;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.30;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2449,282,0 chrXVI 576347 . G C 2300 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=101.4834;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=19.17;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2333,270,0 chrXVI 576638 . C T 3796.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=19.87;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:3796,426,0 chrXVI 576653 . A G 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=181;Dels=0.00;FS=6.442;HaplotypeScore=7.7810;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-0.239;QD=19.88;ReadPosRankSum=2.422;SB=-2.132e+03 GT:AD:DP:GQ:PL 1/1:2,178:181:99:3598,423,0 chrXVI 576758 . T G 3730.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.590;DP=184;Dels=0.00;FS=3.256;HaplotypeScore=21.0233;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.561;QD=20.27;ReadPosRankSum=1.313;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:1,181:184:99:3730,414,0 chrXVI 576896 . A G 3558.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.55;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3558,420,0 chrXVI 576907 . C T 3901.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.8402;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.53;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,186:190:99:3901,432,0 chrXVI 576985 . T C 3178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=145;Dels=0.00;FS=8.510;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-1.349;QD=21.92;ReadPosRankSum=2.415;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:2,141:145:99:3211,369,0 chrXVI 577046 . A G 2902 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.66;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2935,345,0 chrXVI 577130 . C T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.30;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3268,351,0 chrXVI 577229 . T C 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.495;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.352;QD=19.79;ReadPosRankSum=1.704;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2507,276,0 chrXVI 577235 . T C 2258 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=19.14;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2291,258,0 chrXVI 577272 . C T 1905 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=18.14;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1938,210,0 chrXVI 577381 . C A 2263 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=22.63;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2296,249,0 chrXVI 577411 . G A 1913 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.02;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1946,210,0 chrXVI 577561 . C A 2000 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.02;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=21.51;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2033,222,0 chrXVI 577562 . A T 2044 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.02;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=21.29;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2077,228,0 chrXVI 577582 . T C 1640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=92;Dels=0.00;FS=2.812;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.228;QD=17.83;ReadPosRankSum=2.396;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1673,186,0 chrXVI 577654 . C T 2739 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.61;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2772,306,0 chrXVI 577750 . C T 2845 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.32;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2878,312,0 chrXVI 577813 . G A 6217.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=16.2286;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.87;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,247:250:99:6217,676,0 chrXVI 577966 . A G 4454.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=21.7086;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.34;SB=-2.353e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:4454,527,0 chrXVI 578041 . C G 7721.01 filter AC=2;AF=1.00;AN=2;DP=364;Dels=0.00;FS=0.000;HaplotypeScore=25.9694;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.21;SB=-4.136e+03 GT:AD:DP:GQ:PL 1/1:0,356:364:99:7721,879,0 chrXVI 578104 . G A 7454.01 PASS AC=2;AF=1.00;AN=2;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=13.0795;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.60;SB=-2.697e+03 GT:AD:DP:GQ:PL 1/1:0,302:303:99:7454,808,0 chrXVI 578155 . G A 7073.01 PASS AC=2;AF=1.00;AN=2;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=8.2252;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.70;SB=-2.802e+03 GT:AD:DP:GQ:PL 1/1:0,326:326:99:7073,763,0 chrXVI 578173 . A G 5798.01 PASS AC=2;AF=1.00;AN=2;DP=318;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=18.23;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:0,318:318:99:5798,683,0 chrXVI 578188 . C T 5865.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=318;Dels=0.00;FS=4.305;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;MQRankSum=0.381;QD=18.44;ReadPosRankSum=1.318;SB=-3.153e+03 GT:AD:DP:GQ:PL 1/1:1,317:318:99:5865,642,0 chrXVI 578197 . T C 5736.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=333;Dels=0.00;FS=5.355;HaplotypeScore=10.8545;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=0.604;QD=17.23;ReadPosRankSum=2.937;SB=-3.222e+03 GT:AD:DP:GQ:PL 1/1:3,329:333:99:5736,645,0 chrXVI 578287 . T C 6328.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=329;Dels=0.00;FS=7.952;HaplotypeScore=22.2528;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=2.271;QD=19.23;ReadPosRankSum=2.367;SB=-3.260e+03 GT:AD:DP:GQ:PL 1/1:2,327:329:99:6328,711,0 chrXVI 578350 . A G 6925.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.084;DP=333;Dels=0.00;FS=7.261;HaplotypeScore=21.4948;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.790;QD=20.80;ReadPosRankSum=4.144;SB=-2.328e+03 GT:AD:DP:GQ:PL 1/1:6,325:333:99:6925,792,0 chrXVI 578413 . T C 5144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=249;Dels=0.00;FS=5.812;HaplotypeScore=13.0207;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=0.426;QD=20.66;ReadPosRankSum=1.704;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,243:249:99:5144,602,0 chrXVI 578605 . A G 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=193;Dels=0.00;FS=4.222;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-1.714;QD=21.76;ReadPosRankSum=1.678;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4199,489,0 chrXVI 578623 . G A 4362.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.84;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,188:191:99:4362,471,0 chrXVI 578686 . A G 3287.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=17.30;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3287,393,0 chrXVI 578941 . T C 4086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=201;Dels=0.00;FS=3.027;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.080;QD=20.33;ReadPosRankSum=2.388;SB=-2.416e+03 GT:AD:DP:GQ:PL 1/1:2,197:201:99:4086,465,0 chrXVI 578962 . T C 3729.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=20.60;SB=-2.311e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3729,417,0 chrXVI 579256 . A G 4425.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.135;DP=199;Dels=0.00;FS=15.378;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.031;QD=22.24;ReadPosRankSum=3.407;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:4,195:199:99:4425,504,0 chrXVI 579598 . T C 3658.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=4.006;HaplotypeScore=5.7917;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.125;QD=22.04;ReadPosRankSum=1.649;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3658,429,0 chrXVI 579706 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=14.1470;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.12;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,147:152:99:3244,354,0 chrXVI 579787 . C T 3397.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3397,375,0 chrXVI 580156 . T C 4539.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.76;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4539,513,0 chrXVI 580240 . A T 4104.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.2396;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-0.958;QD=21.71;ReadPosRankSum=1.714;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:4104,441,0 chrXVI 580258 . A G 3771.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.275;DP=191;Dels=0.00;FS=8.240;HaplotypeScore=3.5673;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.596;QD=19.74;ReadPosRankSum=3.266;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:4,185:191:99:3771,432,0 chrXVI 580273 . T C 3896.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=19.88;SB=-2.161e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3896,447,0 chrXVI 580348 . G A 4118.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=13.3806;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.88;SB=-2.217e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4118,456,0 chrXVI 580513 . G A 5664.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=14.7746;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.80;SB=-2.243e+03 GT:AD:DP:GQ:PL 1/1:0,237:238:99:5664,613,0 chrXVI 580618 . A G 4246.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.237;DP=188;Dels=0.00;FS=8.932;HaplotypeScore=13.9506;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.943;QD=22.59;ReadPosRankSum=3.385;SB=-2.309e+03 GT:AD:DP:GQ:PL 1/1:4,184:188:99:4246,474,0 chrXVI 580810 . C T 3765.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=17.9526;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.51;SB=-2.019e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3765,405,0 chrXVI 580849 . T C 3490.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.72;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3490,411,0 chrXVI 580882 . C T 3779.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.32;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3779,411,0 chrXVI 580936 . G A 4034.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=15.5322;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.90;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,191:193:99:4034,450,0 chrXVI 581014 . T C 4558.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=193;Dels=0.00;FS=2.737;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.744;QD=23.62;ReadPosRankSum=2.424;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4558,513,0 chrXVI 581104 . A G 4196.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=178;Dels=0.00;FS=3.696;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-1.557;QD=23.57;ReadPosRankSum=1.713;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4196,480,0 chrXVI 581158 . A C 3205.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=-0.697;QD=20.82;ReadPosRankSum=1.665;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3239,378,0 chrXVI 581172 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=19.56;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3085,351,0 chrXVI 581427 . C T 554 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.31;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:63:587,63,0 chrXVI 581428 . C T 543 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.97;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:63:576,63,0 chrXVI 581444 . C T 560 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.47;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:66:593,66,0 chrXVI 581445 . G A 597 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;QD=17.06;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:69:630,69,0 chrXVI 581461 . G A 825 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=18.33;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:93:858,93,0 chrXVI 581474 . C T 1087 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=19.76;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1120,120,0 chrXVI 581499 . A G 1257 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;QD=20.27;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1290,147,0 chrXVI 581539 . G C 1213 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=17.58;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1246,144,0 chrXVI 581566 . A G 741 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=12.56;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:93:774,93,0 chrXVI 581572 . A C 567 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=10.50;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:69:600,69,0 chrXVI 581602 . C T 371 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=7.00;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:45:404,45,0 chrXVI 581607 . T C 317 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=6.10;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:39:350,39,0 chrXVI 581608 . C T 319 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=6.13;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:39:352,39,0 chrXVI 581643 . T G 482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;MQRankSum=-2.269;QD=7.09;ReadPosRankSum=2.377;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:2,66:68:57:515,57,0 chrXVI 581662 . T G 640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;MQRankSum=-1.030;QD=8.65;ReadPosRankSum=1.685;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:75:673,75,0 chrXVI 581701 . A G 786 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.09;MQ0=0;QD=9.14;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:96:819,96,0 chrXVI 581711 . A T 865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=6.070;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.21;MQ0=0;MQRankSum=0.019;QD=9.72;ReadPosRankSum=1.693;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:898,99,0 chrXVI 581715 . G A 896 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.15;MQ0=0;QD=9.96;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:929,105,0 chrXVI 581744 . C T 880 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.09;MQ0=0;QD=8.22;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:913,108,0 chrXVI 581747 . C A 851 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.02;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=30.95;MQ0=0;QD=8.03;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:884,102,0 chrXVI 581748 . A G 835 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.02;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;QD=7.80;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:868,102,0 chrXVI 581829 . A G 3036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=139;Dels=0.00;FS=4.354;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=37.74;MQ0=0;MQRankSum=1.009;QD=21.84;ReadPosRankSum=1.707;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3069,351,0 chrXVI 581896 . G A 3972.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;QD=24.07;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3972,435,0 chrXVI 582013 . C A 2647 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=0;QD=18.91;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2680,291,0 chrXVI 582026 . G A 2799 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=19.04;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2832,306,0 chrXVI 582039 . C T 2404 SnpCluster AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=16.03;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2437,267,0 chrXVI 582043 . T G 2399 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=142;Dels=0.00;FS=12.750;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;MQRankSum=-1.419;QD=16.89;ReadPosRankSum=2.894;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:2432,276,0 chrXVI 582044 . T C 2400 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=4.249;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;MQRankSum=-0.749;QD=17.02;ReadPosRankSum=1.708;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2433,273,0 chrXVI 582149 . A G 1905 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=18.14;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1938,225,0 chrXVI 582272 . T C 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.188;DP=114;Dels=0.00;FS=8.254;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=-0.294;QD=22.82;ReadPosRankSum=2.406;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2635,288,0 chrXVI 582448 . A G 2084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=97;Dels=0.00;FS=7.669;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-0.705;QD=21.48;ReadPosRankSum=2.347;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:2,94:97:99:2117,249,0 chrXVI 582598 . T C 2467 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=20.91;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2500,282,0 chrXVI 582615 . A G 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.612;DP=121;Dels=0.00;FS=11.469;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=-0.538;QD=19.05;ReadPosRankSum=3.743;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:5,115:121:99:2338,276,0 chrXVI 582618 . A G 2299 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=19.82;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2332,264,0 chrXVI 582642 . T C 2124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=3.543;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-0.600;QD=20.23;ReadPosRankSum=1.666;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2157,243,0 chrXVI 582788 . C T 2737 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9533;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.43;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2770,300,0 chrXVI 582802 . G T 2956 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.5374;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.06;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2989,327,0 chrXVI 582837 . A G 3774.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=23.01;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3774,420,0 chrXVI 582893 . C G 4869.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=24.10;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4869,558,0 chrXVI 582921 . T C 4264.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=176;Dels=0.00;FS=2.754;HaplotypeScore=8.0683;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.554;QD=24.23;ReadPosRankSum=2.393;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:4264,477,0 chrXVI 582996 . T C 4298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=184;Dels=0.00;FS=2.976;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.387;QD=23.36;ReadPosRankSum=2.409;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:2,181:184:99:4298,480,0 chrXVI 583060 . G C 5317.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.2315;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.79;SB=-2.963e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5317,600,0 chrXVI 583172 . C G 4305.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=9.0207;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.21;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:4305,480,0 chrXVI 583181 . C T 4487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.349;DP=213;Dels=0.00;FS=3.403;HaplotypeScore=11.4981;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-1.266;QD=21.07;ReadPosRankSum=0.933;SB=-2.440e+03 GT:AD:DP:GQ:PL 1/1:1,207:213:99:4487,483,0 chrXVI 583248 . T C 3344.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=17.69;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:3344,393,0 chrXVI 583281 . A G 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=181;Dels=0.00;FS=5.504;HaplotypeScore=13.3674;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.388;QD=19.54;ReadPosRankSum=2.905;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:3,176:181:99:3536,411,0 chrXVI 583395 . C T 3113 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.5521;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.03;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3146,351,0 chrXVI 583659 . A G 2888 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2921,342,0 chrXVI 583703 . T A 2788 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.12;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2821,309,0 chrXVI 583743 . T A 3311.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=143;Dels=0.00;FS=3.136;HaplotypeScore=7.7524;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.683;QD=23.15;ReadPosRankSum=1.683;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3311,343,0 chrXVI 583962 . T C 3414.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.9515;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.21;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3414,387,0 chrXVI 583996 . T C 3435.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=176;Dels=0.00;FS=3.705;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.457;QD=19.52;ReadPosRankSum=1.712;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3435,390,0 chrXVI 584088 . A G 2470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=0.837;QD=20.25;ReadPosRankSum=1.703;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2503,282,0 chrXVI 584108 . G A 2832 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1504;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=21.45;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2865,309,0 chrXVI 584219 . A G 1906 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=21.42;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1939,222,0 chrXVI 584333 . T C 3327.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=22.63;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3327,384,0 chrXVI 584345 . C T 3099 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=22.46;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3132,339,0 chrXVI 584359 . C T 2716 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=21.05;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2749,303,0 chrXVI 584447 . G A 1729 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;QD=12.01;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:1762,192,0 chrXVI 584453 . C T 1875 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;QD=13.20;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:1908,201,0 chrXVI 584469 . G C 2356 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=16.03;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2389,282,0 chrXVI 584824 . C T 5489.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=16.4529;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.76;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5489,597,0 chrXVI 585037 . G A 5414.01 PASS AC=2;AF=1.00;AN=2;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=11.3709;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.07;SB=-2.898e+03 GT:AD:DP:GQ:PL 1/1:0,253:257:99:5414,609,0 chrXVI 585060 . T C 4963.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=251;Dels=0.00;FS=7.243;HaplotypeScore=12.7537;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-1.381;QD=19.77;ReadPosRankSum=2.351;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:2,246:251:99:4963,552,0 chrXVI 585134 . G A 6799.01 PASS AC=2;AF=1.00;AN=2;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=9.2315;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.74;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,298:299:99:6799,739,0 chrXVI 585153 . A G 6194.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.830;DP=292;Dels=0.00;FS=4.661;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.276;QD=21.21;ReadPosRankSum=3.798;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:5,287:292:99:6194,699,0 chrXVI 585208 . A T 3625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.817;DP=193;Dels=0.00;FS=2.528;HaplotypeScore=19.8147;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.785;QD=18.78;ReadPosRankSum=2.880;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:3,190:193:99:3625,396,0 chrXVI 585557 . G A 3408.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.6681;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.99;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3408,375,0 chrXVI 585566 . T C 3424.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=3.326;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.849;QD=21.81;ReadPosRankSum=1.710;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3424,378,0 chrXVI 585624 . G A 3168 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.15;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3201,345,0 chrXVI 585743 . C T 3653.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.2082;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.42;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3653,393,0 chrXVI 585774 . G A 3946.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.21;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3946,429,0 chrXVI 585863 . G A 2356 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.97;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2389,270,0 chrXVI 585888 . C T 1902 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=16.54;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1935,216,0 chrXVI 585894 . A G 1807 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=15.99;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1840,216,0 chrXVI 585921 . T G 2309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=3.529;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.293;QD=16.26;ReadPosRankSum=1.683;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2342,267,0 chrXVI 586133 . T C 2806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4549;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=-0.430;QD=19.76;ReadPosRankSum=1.069;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2839,321,0 chrXVI 586142 . G C 2781 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8776;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.45;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2814,318,0 chrXVI 586291 . C T 3873.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.2409;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.01;SB=-2.077e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3873,414,0 chrXVI 586309 . A G 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=0.718;QD=20.96;ReadPosRankSum=1.711;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3437,396,0 chrXVI 586546 . T C 3508.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-1.596;QD=22.20;ReadPosRankSum=1.664;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:1,153:158:99:3508,399,0 chrXVI 586725 . T A 4449.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=25.14;SB=-2.159e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4449,480,0 chrXVI 586768 . A G 3629.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.104;QD=22.54;ReadPosRankSum=1.689;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3629,402,0 chrXVI 586856 . G C 3817.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.45;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,165:170:99:3817,426,0 chrXVI 587177 . A G 2725 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.4860;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.63;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2758,309,0 chrXVI 587188 . G T 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=133;Dels=0.00;FS=3.043;HaplotypeScore=6.9873;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=0.848;QD=22.57;ReadPosRankSum=2.226;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:2,130:133:99:3035,327,0 chrXVI 587507 . A G 2604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=118;Dels=0.00;FS=3.848;HaplotypeScore=9.9130;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.608;QD=22.07;ReadPosRankSum=1.580;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,113:118:99:2637,297,0 chrXVI 587665 . A C 4290.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.94;SB=-2.164e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4290,474,0 chrXVI 587753 . A G 3307.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=148;Dels=0.00;FS=3.965;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=0.295;QD=22.34;ReadPosRankSum=1.709;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,146:148:99:3307,369,0 chrXVI 587761 . A G 3002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=145;Dels=0.00;FS=8.130;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=1.272;QD=20.70;ReadPosRankSum=2.380;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:2,140:145:99:3035,351,0 chrXVI 587806 . G A 3139 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.25;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3172,339,0 chrXVI 587838 . C T 4089.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.6769;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.93;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4089,444,0 chrXVI 587915 . C A 3766.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=12.0037;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.42;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3766,417,0 chrXVI 588012 . C A 3889.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.74;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3889,435,0 chrXVI 588257 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2440,264,0 chrXVI 588777 . C T 2273 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.48;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2306,255,0 chrXVI 588825 . G A 3112 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=23.05;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3145,336,0 chrXVI 588877 . A G 2556 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;QD=21.66;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2589,291,0 chrXVI 588898 . C T 2562 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=6.2729;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=0;QD=21.17;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2595,276,0 chrXVI 588931 . G A 2695 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=21.91;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2728,297,0 chrXVI 588991 . A G 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=146;Dels=0.00;FS=6.551;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=1.938;QD=22.77;ReadPosRankSum=2.415;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:2,142:146:99:3325,375,0 chrXVI 589172 . C T 4641.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;QD=23.92;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4641,498,0 chrXVI 589257 . G A 2505 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.2847;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=0;QD=19.12;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2538,273,0 chrXVI 589268 . A G 2606 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.72;MQ0=0;QD=17.85;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2639,300,0 chrXVI 589366 . A T 78.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246;DP=200;Dels=0.00;FS=3.780;HaplotypeScore=113.9739;MLEAC=1;MLEAF=0.500;MQ=35.11;MQ0=0;MQRankSum=0.500;QD=0.39;ReadPosRankSum=-2.994;SB=-8.401e+01 GT:AD:DP:GQ:PL 0/1:171,29:200:79:108,0,79 chrXVI 589367 . C G 95.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.369;DP=143;Dels=0.00;FS=2.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.27;MQ0=0;MQRankSum=-0.289;QD=0.67;ReadPosRankSum=-8.302;SB=-1.293e+02 GT:AD:DP:GQ:PL 1/1:114,29:143:15:128,15,0 chrXVI 589369 . C T 163.06 SnpCluster AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.07;MQ0=0;QD=1.11;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:21:196,21,0 chrXVI 589380 . A G 1806 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.2025;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=11.01;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:1839,207,0 chrXVI 589494 . C T 3445.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.6786;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=24.78;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3445,372,0 chrXVI 589510 . T A 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=39.17;MQ0=0;MQRankSum=-0.171;QD=23.87;ReadPosRankSum=1.683;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3437,372,0 chrXVI 589604 . A G 4184.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=180;Dels=0.00;FS=3.895;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=36.28;MQ0=0;MQRankSum=-0.997;QD=23.24;ReadPosRankSum=1.693;SB=-1.760e+03 GT:AD:DP:GQ:PL 1/1:1,178:180:99:4184,465,0 chrXVI 589740 . A G 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=157;Dels=0.00;FS=3.094;HaplotypeScore=5.0889;MLEAC=2;MLEAF=1.00;MQ=36.65;MQ0=0;MQRankSum=-1.092;QD=19.03;ReadPosRankSum=1.688;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3021,345,0 chrXVI 589747 . A G 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=146;Dels=0.00;FS=6.741;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=0;MQRankSum=-2.026;QD=18.99;ReadPosRankSum=2.416;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2806,318,0 chrXVI 589764 . T C 2608 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.21;MQ0=0;QD=18.24;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2641,297,0 chrXVI 589765 . T C 2486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=145;Dels=0.00;FS=6.106;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.17;MQ0=0;MQRankSum=-0.701;QD=17.14;ReadPosRankSum=2.910;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:2519,300,0 chrXVI 589781 . T A 2420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=160;Dels=0.00;FS=3.349;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=0;MQRankSum=-1.494;QD=15.12;ReadPosRankSum=1.710;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:2453,273,0 chrXVI 589795 . G C 2664 SnpCluster AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=15.40;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:2697,300,0 chrXVI 589798 . G A 2494 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=15.78;SB=-1.829e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2527,273,0 chrXVI 589800 . C T 2414 SnpCluster AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=15.28;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2447,273,0 chrXVI 589802 . T G 2395 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=3.625;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;MQRankSum=-0.142;QD=15.06;ReadPosRankSum=1.710;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2428,273,0 chrXVI 589805 . A G 2394 SnpCluster AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=13.53;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:2427,276,0 chrXVI 589811 . C T 2654 SnpCluster AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=15.08;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:2687,291,0 chrXVI 589832 . T C 2441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=182;Dels=0.00;FS=4.405;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=29.16;MQ0=0;MQRankSum=-0.038;QD=13.41;ReadPosRankSum=1.713;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:2474,276,0 chrXVI 589870 . T C 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.921;HaplotypeScore=132.6200;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.117;QD=10.79;ReadPosRankSum=1.709;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:1630,183,0 chrXVI 590012 . C T 2791 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.02;FS=0.000;HaplotypeScore=25.0484;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=22.69;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2824,306,0 chrXVI 590060 . T C 2913 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=24.48;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2946,333,0 chrXVI 590196 . A G 2342 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.90;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2375,267,0 chrXVI 590239 . T G 2570 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.24;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2603,303,0 chrXVI 590262 . A T 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=7.874;HaplotypeScore=10.2665;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.893;QD=20.40;ReadPosRankSum=2.373;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2665,297,0 chrXVI 590364 . G C 3951.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.4263;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.24;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3951,438,0 chrXVI 590563 . A G 4927.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=7.3678;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.62;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,237:239:99:4927,564,0 chrXVI 590589 . C T 5655.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=7.5369;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.87;SB=-3.148e+03 GT:AD:DP:GQ:PL 1/1:0,271:271:99:5655,615,0 chrXVI 590724 . A G 6015.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.631;DP=280;Dels=0.00;FS=10.357;HaplotypeScore=25.8076;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.728;QD=21.48;ReadPosRankSum=2.946;SB=-3.011e+03 GT:AD:DP:GQ:PL 1/1:3,277:280:99:6015,669,0 chrXVI 591000 . A G 3184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.182;DP=164;Dels=0.00;FS=2.400;HaplotypeScore=12.7921;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.826;QD=19.41;ReadPosRankSum=3.321;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:4,160:164:99:3217,363,0 chrXVI 591009 . C T 2962 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.16;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2995,327,0 chrXVI 591334 . G A 3426.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.30;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3426,384,0 chrXVI 591540 . G A 2651 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=21.21;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2684,291,0 chrXVI 591603 . T G 2412 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=22.54;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2445,282,0 chrXVI 591748 . T C 1312 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=15.26;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1345,156,0 chrXVI 591790 . A G 1230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;MQRankSum=-0.338;QD=15.00;ReadPosRankSum=1.690;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1263,144,0 chrXVI 591791 . C T 1288 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=15.71;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1321,147,0 chrXVI 591826 . A G 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.057;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=-1.099;QD=19.59;ReadPosRankSum=1.695;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1874,213,0 chrXVI 591845 . T A 1921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=97;Dels=0.00;FS=3.017;HaplotypeScore=6.2507;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;MQRankSum=0.402;QD=19.80;ReadPosRankSum=2.320;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1954,216,0 chrXVI 591899 . G A 2612 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.5811;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=23.75;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2645,291,0 chrXVI 591926 . A G 2396 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.4380;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=21.98;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2429,276,0 chrXVI 591978 . G A 2046 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=22.24;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2079,222,0 chrXVI 591996 . G A 1993 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=23.17;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2026,219,0 chrXVI 592063 . A C 1911 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=20.33;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1944,222,0 chrXVI 592088 . C A 1801 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=18.57;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1834,201,0 chrXVI 592112 . G A 1570 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=15.24;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1603,174,0 chrXVI 592115 . A G 1374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;MQRankSum=1.592;QD=13.74;ReadPosRankSum=1.697;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1407,165,0 chrXVI 593197 . G T 2210 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.78;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2243,243,0 chrXVI 593199 . T C 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=97;Dels=0.00;FS=11.818;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=1.039;QD=21.58;ReadPosRankSum=2.398;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:2,94:97:99:2126,243,0 chrXVI 593234 . T C 1787 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=10.5115;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.27;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1820,207,0 chrXVI 593316 . T C 1721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=2.685;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=1.015;QD=18.91;ReadPosRankSum=2.396;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1754,201,0 chrXVI 593317 . A G 1668 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.33;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1701,201,0 chrXVI 593372 . C T 1901 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.01;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1934,213,0 chrXVI 593408 . T C 2031 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.61;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2064,243,0 chrXVI 593438 . T C 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.391;QD=18.96;ReadPosRankSum=1.695;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1796,204,0 chrXVI 593464 . T C 1860 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=17.22;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1893,213,0 chrXVI 593478 . C T 1866 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.0639;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=17.60;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1899,207,0 chrXVI 593569 . T G 3134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=147;Dels=0.00;FS=3.131;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=0.997;QD=21.32;ReadPosRankSum=1.708;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3167,357,0 chrXVI 593582 . A G 3000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.624;QD=19.74;ReadPosRankSum=1.686;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:1,149:152:99:3033,351,0 chrXVI 593633 . A G 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=153;Dels=0.00;FS=3.594;HaplotypeScore=10.2214;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=1.342;QD=19.39;ReadPosRankSum=1.686;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:2999,342,0 chrXVI 593663 . G A 3099 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.29;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3132,342,0 chrXVI 593867 . G C 4217.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.41;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:0,194:197:99:4217,486,0 chrXVI 594005 . T C 3989.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=189;Dels=0.00;FS=3.711;HaplotypeScore=12.9947;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.995;QD=21.11;ReadPosRankSum=1.695;SB=-2.035e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3989,450,0 chrXVI 594060 . C T 4487.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.55;SB=-2.332e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4487,477,0 chrXVI 594078 . G A 4175.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.69;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4175,453,0 chrXVI 594115 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.40;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3509,390,0 chrXVI 594355 . T C 4049.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.3710;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.584;QD=22.37;ReadPosRankSum=1.713;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:4049,471,0 chrXVI 594386 . G A 4632.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=22.71;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4632,522,0 chrXVI 594410 . C G 4619.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=23.81;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4619,516,0 chrXVI 594625 . T C 3782.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=209;Dels=0.00;FS=3.638;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;MQRankSum=-0.966;QD=18.10;ReadPosRankSum=1.649;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:1,207:209:99:3782,444,0 chrXVI 594633 . G A 3816.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=18.80;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:3816,417,0 chrXVI 594666 . T C 2846 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=189;Dels=0.00;FS=9.970;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;MQRankSum=-0.449;QD=15.06;ReadPosRankSum=2.963;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:3,185:189:99:2879,330,0 chrXVI 594667 . G A 2972 SnpCluster AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;QD=15.72;SB=-2.334e+03 GT:AD:DP:GQ:PL 1/1:0,186:189:99:3005,330,0 chrXVI 594669 . A C 2810 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=194;Dels=0.00;FS=2.162;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;MQRankSum=-0.199;QD=14.48;ReadPosRankSum=2.796;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:3,189:194:99:2843,327,0 chrXVI 594747 . A G 4423.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=208;Dels=0.00;FS=3.031;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-0.596;QD=21.26;ReadPosRankSum=2.414;SB=-2.620e+03 GT:AD:DP:GQ:PL 1/1:2,206:208:99:4423,501,0 chrXVI 594764 . C G 4767.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=8.2660;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.59;SB=-2.675e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4767,525,0 chrXVI 594861 . A G 4579.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=194;Dels=0.00;FS=6.697;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=0.677;QD=23.60;ReadPosRankSum=2.386;SB=-2.290e+03 GT:AD:DP:GQ:PL 1/1:2,192:194:99:4579,510,0 chrXVI 594974 . A C 3557.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.929;DP=187;Dels=0.00;FS=13.621;HaplotypeScore=5.3887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-0.579;QD=19.02;ReadPosRankSum=4.036;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:6,181:187:99:3557,414,0 chrXVI 594975 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-0.678;QD=19.11;ReadPosRankSum=1.694;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:1,183:189:99:3611,414,0 chrXVI 595278 . A G 2815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=121;Dels=0.00;FS=3.032;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.030;QD=23.26;ReadPosRankSum=2.389;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2848,318,0 chrXVI 595359 . G A 3379.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.14;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3379,363,0 chrXVI 595421 . C T 2960 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.60;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2993,327,0 chrXVI 595439 . C T 2923 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=19.23;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:2956,321,0 chrXVI 595451 . C A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=17.1443;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=19.62;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,163:167:99:3276,351,0 chrXVI 595531 . T C 4502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=16.6978;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.217;QD=23.33;ReadPosRankSum=1.696;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,191:193:99:4502,525,0 chrXVI 595601 . A G 4962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=212;Dels=0.00;FS=8.283;HaplotypeScore=9.0686;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.870;QD=23.41;ReadPosRankSum=2.334;SB=-2.091e+03 GT:AD:DP:GQ:PL 1/1:2,210:212:99:4962,552,0 chrXVI 595708 . G A 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.614;DP=168;Dels=0.00;FS=14.620;HaplotypeScore=371.2416;MLEAC=1;MLEAF=0.500;MQ=53.30;MQ0=0;MQRankSum=2.667;QD=0.25;ReadPosRankSum=-6.175;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:151,17:168:72:72,0,238 chrXVI 595717 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=171;Dels=0.00;FS=13.712;HaplotypeScore=4.2252;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=-0.154;QD=19.49;ReadPosRankSum=2.793;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:3,167:171:99:3332,390,0 chrXVI 595838 . C T 3792.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.30;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3792,411,0 chrXVI 595961 . C T 3476.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=24.14;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3476,384,0 chrXVI 595988 . T C 2367 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.58;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2400,270,0 chrXVI 595999 . G A 2038 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.41;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2071,228,0 chrXVI 596138 . T C 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=162;Dels=0.00;FS=8.420;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.866;QD=22.28;ReadPosRankSum=2.357;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:2,158:162:99:3609,399,0 chrXVI 596438 . A G 3336.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=21.11;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3336,372,0 chrXVI 596463 . T C 3029 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=20.06;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3062,354,0 chrXVI 596477 . T C 3176 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=20.23;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3209,357,0 chrXVI 596587 . C T 3074 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.60;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3107,339,0 chrXVI 596625 . C T 2746 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.79;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2779,303,0 chrXVI 596701 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.053;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.5018;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=0.398;QD=22.84;ReadPosRankSum=-0.749;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3426,349,0 chrXVI 596886 . T C 3348.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=145;Dels=0.00;FS=6.234;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.263;QD=23.09;ReadPosRankSum=2.416;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:3348,375,0 chrXVI 597024 . G A 3809.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4216;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3809,411,0 chrXVI 597694 . C T 3744.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3744,405,0 chrXVI 597958 . A T 5663.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=18.6504;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.00;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:0,236:236:99:5663,612,0 chrXVI 598003 . T C 4980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.232;QD=21.56;ReadPosRankSum=1.657;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:1,230:231:99:4980,579,0 chrXVI 598117 . G A 4515.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.90;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:4515,501,0 chrXVI 598135 . T C 4395.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.54;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4395,516,0 chrXVI 598282 . G A 4040.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.34;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4040,441,0 chrXVI 598456 . T C 3453.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=159;Dels=0.00;FS=3.038;HaplotypeScore=14.3942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.286;QD=21.72;ReadPosRankSum=2.419;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3453,390,0 chrXVI 598918 . C T 4738.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=17.6731;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.81;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4738,510,0 chrXVI 599014 . G A 4854.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.34;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4854,528,0 chrXVI 599378 . G A 3855.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.8690;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.71;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3855,417,0 chrXVI 599572 . C T 2968 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.35;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3001,324,0 chrXVI 599898 . G A 2367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.328;DP=120;Dels=0.00;FS=3.716;HaplotypeScore=1.6545;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-1.703;QD=19.72;ReadPosRankSum=-1.241;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2400,239,0 chrXVI 599905 . G A 2416 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.01;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2449,270,0 chrXVI 600285 . T G 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.191;DP=96;Dels=0.00;FS=6.160;HaplotypeScore=8.6372;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=2.113;QD=22.21;ReadPosRankSum=2.398;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:2,93:96:99:2165,240,0 chrXVI 600385 . A G 1924 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.14;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1957,231,0 chrXVI 600581 . T C 871 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=15.84;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,54:55:99:904,99,0 chrXVI 600681 . A G 1877 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=25.03;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1910,210,0 chrXVI 600772 . G A 1610 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1643,183,0 chrXVI 600877 . C A 2442 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.52;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2475,279,0 chrXVI 600896 . A G 2430 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.42;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2463,282,0 chrXVI 601336 . G C 2894 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.28;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2927,336,0 chrXVI 601953 . A G 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.058;QD=19.29;ReadPosRankSum=1.640;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2232,249,0 chrXVI 601963 . C T 2216 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=20.33;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2249,246,0 chrXVI 602136 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.73;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2715,303,0 chrXVI 602215 . G A 2115 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.50;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2148,228,0 chrXVI 602623 . C T 2298 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2331,252,0 chrXVI 602884 . A G 1977 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2010,231,0 chrXVI 602920 . A G 1938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.804;QD=19.98;ReadPosRankSum=1.696;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1971,231,0 chrXVI 603583 . C G 2480 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.95;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2513,288,0 chrXVI 603605 . C T 2501 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.33;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2534,273,0 chrXVI 603640 . G A 2284 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.95;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2317,258,0 chrXVI 603847 . G A 2801 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.77;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2834,318,0 chrXVI 604022 . G A 3201 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.03;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3234,366,0 chrXVI 604091 . C T 3746.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.56;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3746,405,0 chrXVI 604106 . G T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=20.74;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3547,381,0 chrXVI 604118 . G A 3699.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.99;SB=-2.473e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:3699,393,0 chrXVI 604262 . T A 5219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.192;QD=23.72;ReadPosRankSum=1.716;SB=-2.154e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:5219,570,0 chrXVI 604448 . T C 5056.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=231;Dels=0.00;FS=3.512;HaplotypeScore=6.6145;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.673;QD=21.89;ReadPosRankSum=-0.613;SB=-2.677e+03 GT:AD:DP:GQ:PL 1/1:1,228:231:99:5056,579,0 chrXVI 604538 . C T 4071.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.2322;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.74;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:4071,447,0 chrXVI 604655 . G A 5146.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.74;SB=-2.521e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5146,558,0 chrXVI 604883 . T C 3753.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=177;Dels=0.00;FS=8.072;HaplotypeScore=8.5218;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.038;QD=21.20;ReadPosRankSum=2.393;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:2,172:177:99:3753,438,0 chrXVI 605063 . T A 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=118;Dels=0.00;FS=3.043;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.711;QD=20.37;ReadPosRankSum=2.407;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2437,270,0 chrXVI 605066 . A G 2321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=126;Dels=0.00;FS=3.081;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.810;QD=18.42;ReadPosRankSum=1.676;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2354,273,0 chrXVI 605225 . T C 2291 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.41;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2324,267,0 chrXVI 605307 . G A 3421.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.59;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3421,372,0 chrXVI 605750 . G A 3193 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.01;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3226,357,0 chrXVI 606191 . G T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.30;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3389,369,0 chrXVI 606380 . T C 125.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.790;DP=163;Dels=0.00;FS=12.780;HaplotypeScore=132.6625;MLEAC=2;MLEAF=1.00;MQ=40.84;MQ0=6;MQRankSum=5.627;QD=0.77;ReadPosRankSum=-5.374;SB=2.87 GT:AD:DP:GQ:PL 1/1:140,23:163:18:158,18,0 chrXVI 606383 . T C 102.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.937;DP=167;Dels=0.00;FS=1.633;HaplotypeScore=374.6973;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=6;MQRankSum=4.078;QD=0.61;ReadPosRankSum=-5.812;SB=-1.151e+02 GT:AD:DP:GQ:PL 1/1:128,38:167:18:135,18,0 chrXVI 606814 . C T 3747.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=20.70;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,177:181:99:3747,405,0 chrXVI 606832 . C G 3709.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.9816;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=19.22;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,190:193:99:3709,423,0 chrXVI 607353 . C T 1911 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1944,222,0 chrXVI 607493 . G A 1924 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.47;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1957,213,0 chrXVI 607688 . G C 2453 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=5.6292;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=21.52;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,109:113:99:2486,282,0 chrXVI 607854 . C T 1287 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=11.81;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1320,150,0 chrXVI 607904 . G A 2096 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=16.25;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2129,237,0 chrXVI 607906 . G A 2145 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=16.63;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2178,237,0 chrXVI 607921 . C T 2364 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=15.76;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2397,261,0 chrXVI 607926 . A G 2206 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=14.71;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2239,258,0 chrXVI 608011 . T C 90.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=3.082;HaplotypeScore=7.7779;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-0.880;QD=0.74;ReadPosRankSum=1.647;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:15:123,15,0 chrXVI 608142 . C T 4995.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=24.13;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,205:207:99:4995,546,0 chrXVI 608268 . T C 2898 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=18.94;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2931,330,0 chrXVI 608269 . T C 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=155;Dels=0.00;FS=6.693;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=-0.103;QD=18.01;ReadPosRankSum=2.370;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:2824,327,0 chrXVI 608465 . C T 2364 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=19.38;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2397,279,0 chrXVI 608467 . A C 2433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=123;Dels=0.00;FS=2.867;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=-0.090;QD=19.78;ReadPosRankSum=2.390;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2466,273,0 chrXVI 608523 . G A 2713 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.55;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2746,300,0 chrXVI 608544 . C T 3132 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.02;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3165,351,0 chrXVI 608924 . C T 3983.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.13;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3983,438,0 chrXVI 609195 . G A 3631.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.05;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3631,390,0 chrXVI 609390 . G A 3642.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=22.48;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3642,393,0 chrXVI 609399 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=169;Dels=0.00;FS=3.168;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.619;QD=20.15;ReadPosRankSum=0.557;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3406,393,0 chrXVI 609546 . A G 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=162;Dels=0.00;FS=6.102;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-0.740;QD=17.15;ReadPosRankSum=2.343;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:2811,315,0 chrXVI 609547 . A G 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=164;Dels=0.00;FS=9.195;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.094;QD=17.29;ReadPosRankSum=2.931;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:3,158:164:99:2869,318,0 chrXVI 609630 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.68;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3329,369,0 chrXVI 609704 . T C 3634.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.16;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3634,411,0 chrXVI 609789 . G A 3653.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=16.3981;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.85;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,181:184:99:3653,393,0 chrXVI 610056 . C T 5065.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=12.0766;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.12;SB=-2.603e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5065,549,0 chrXVI 610128 . T C 5044.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=226;Dels=0.00;FS=5.536;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.192;QD=22.32;ReadPosRankSum=2.969;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:3,222:226:99:5044,567,0 chrXVI 610223 . C T 3771.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.19;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,174:178:99:3771,414,0 chrXVI 610298 . G A 4461.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.88;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4461,486,0 chrXVI 610439 . T A 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=147;Dels=0.00;FS=7.006;HaplotypeScore=11.9735;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=0.737;QD=23.17;ReadPosRankSum=2.331;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3406,372,0 chrXVI 610635 . A C 3744.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.684;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=10.6587;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.235;QD=22.97;ReadPosRankSum=0.834;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,161:163:99:3744,399,0 chrXVI 610702 . A T 4401.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=191;Dels=0.00;FS=3.620;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.499;QD=23.04;ReadPosRankSum=1.678;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4401,480,0 chrXVI 610743 . C A 4365.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.6609;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4365,471,0 chrXVI 610921 . G A 6566.01 PASS AC=2;AF=1.00;AN=2;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=27.2254;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.23;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:0,269:271:99:6566,714,0 chrXVI 610981 . G A 5695.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=236;Dels=0.00;FS=3.643;HaplotypeScore=13.7516;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=-1.717;QD=24.13;ReadPosRankSum=0.998;SB=-2.541e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:5695,600,0 chrXVI 611302 . T C 3947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=3.280;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.070;QD=21.57;ReadPosRankSum=1.713;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3947,447,0 chrXVI 611386 . T C 4226.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-2.344e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4226,474,0 chrXVI 611518 . A C 2445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=138;Dels=0.00;FS=2.884;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.804;QD=17.72;ReadPosRankSum=2.323;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:2,134:138:99:2478,294,0 chrXVI 611524 . T C 2465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=3.701;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.484;QD=18.12;ReadPosRankSum=1.707;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2498,297,0 chrXVI 611686 . T C 4162.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.87;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4162,471,0 chrXVI 611818 . T C 4749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.4441;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.730;QD=23.28;ReadPosRankSum=1.681;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4749,534,0 chrXVI 612400 . T A 4530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=204;Dels=0.00;FS=4.404;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.204;QD=22.21;ReadPosRankSum=1.715;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4530,489,0 chrXVI 612448 . C T 4465.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,196:197:99:4465,483,0 chrXVI 612795 . C T 3200 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.0485;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.65;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3233,360,0 chrXVI 612824 . A G 3106 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.4947;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.91;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3139,366,0 chrXVI 612903 . G A 3017 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.72;SB=-1.667e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3050,333,0 chrXVI 612912 . A G 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=154;Dels=0.00;FS=3.068;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.775;QD=18.83;ReadPosRankSum=1.687;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:1,151:154:99:2933,333,0 chrXVI 613008 . T C 3306.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=148;Dels=0.00;FS=2.612;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.443;QD=22.34;ReadPosRankSum=2.399;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:3306,375,0 chrXVI 613103 . T C 2640 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.12;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2673,306,0 chrXVI 613633 . G A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.06;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3321,360,0 chrXVI 613725 . C T 3837.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.84;SB=-2.028e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3837,420,0 chrXVI 613884 . G A 3732.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.0679;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.05;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3732,402,0 chrXVI 613944 . C T 3362.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.41;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3362,369,0 chrXVI 614016 . G A 3913.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.46;SB=-2.011e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3913,420,0 chrXVI 614103 . A G 2425 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.65;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2458,279,0 chrXVI 614283 . A G 2533 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.42;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2566,291,0 chrXVI 614380 . T A 3005 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.23;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3038,327,0 chrXVI 614400 . A G 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.655;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.209;QD=22.94;ReadPosRankSum=1.702;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2694,300,0 chrXVI 614501 . A T 2565 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.70;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2598,279,0 chrXVI 614563 . T C 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=3.608;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-1.237;QD=20.93;ReadPosRankSum=1.707;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2984,333,0 chrXVI 614587 . T C 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=129;Dels=0.00;FS=3.714;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.505;QD=18.99;ReadPosRankSum=1.705;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2483,276,0 chrXVI 614631 . C G 2417 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.39;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2450,279,0 chrXVI 614654 . A T 2837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=119;Dels=0.00;FS=10.719;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.362;QD=23.84;ReadPosRankSum=2.367;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2870,309,0 chrXVI 614701 . A G 3153 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.9591;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.18;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3186,363,0 chrXVI 614881 . C T 4240.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.01;FS=0.000;HaplotypeScore=23.9995;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.52;SB=-2.396e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4240,465,0 chrXVI 615151 . A C 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.9259;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-0.262;QD=16.54;ReadPosRankSum=1.583;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:1,138:140:99:2349,261,0 chrXVI 615159 . G A 2419 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=17.79;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2452,267,0 chrXVI 615302 . T C 1080 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=3.108;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;MQRankSum=-0.154;QD=12.00;ReadPosRankSum=1.694;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1113,123,0 chrXVI 615308 . G C 1131 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.5076;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=12.29;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1164,132,0 chrXVI 615310 . C T 1209 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.7736;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=13.00;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1242,132,0 chrXVI 615470 . G A 2638 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=23.98;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2671,288,0 chrXVI 615756 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=164;Dels=0.00;FS=3.993;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.243;QD=21.89;ReadPosRankSum=1.711;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3590,426,0 chrXVI 615999 . T C 3823.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.7926;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.128;QD=22.10;ReadPosRankSum=1.652;SB=-1.953e+03 GT:AD:DP:GQ:PL 1/1:1,171:173:99:3823,435,0 chrXVI 616149 . C T 5200.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.76;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5200,561,0 chrXVI 616401 . T C 3312.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.96;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3312,381,0 chrXVI 616422 . T G 2848 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.64;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2881,333,0 chrXVI 616661 . G A 3752.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.135;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.2328;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.282;QD=24.21;ReadPosRankSum=-0.540;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3752,387,0 chrXVI 616836 . T C 4001.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.7767;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.74;SB=-2.083e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4001,453,0 chrXVI 616899 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=172;Dels=0.00;FS=3.697;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.448;QD=20.69;ReadPosRankSum=1.692;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3559,417,0 chrXVI 617130 . T C 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=3.040;HaplotypeScore=12.1764;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.179;QD=20.26;ReadPosRankSum=2.364;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2950,345,0 chrXVI 617214 . A G 3184 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.51;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3217,375,0 chrXVI 617271 . A G 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.6961;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=1.207;QD=20.13;ReadPosRankSum=1.690;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3341,378,0 chrXVI 617286 . A G 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=176;Dels=0.00;FS=3.011;HaplotypeScore=15.5232;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=0.274;QD=19.22;ReadPosRankSum=2.393;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:2,173:176:99:3383,399,0 chrXVI 617481 . T C 3007 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.13;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3040,342,0 chrXVI 617643 . G A 4073.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.96;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:4073,441,0 chrXVI 618087 . C T 4010.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.75;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4010,435,0 chrXVI 618129 . A G 4369.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=185;Dels=0.00;FS=3.783;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.659;QD=23.62;ReadPosRankSum=1.713;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4369,489,0 chrXVI 618231 . C T 4257.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:4257,465,0 chrXVI 618312 . T C 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=4.559;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.346;QD=21.14;ReadPosRankSum=1.689;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3383,396,0 chrXVI 618367 . T G 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=154;Dels=0.00;FS=15.105;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.575;QD=21.38;ReadPosRankSum=2.941;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:3293,381,0 chrXVI 618453 . G A 3326.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.01;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3326,363,0 chrXVI 618585 . G A 3108 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.73;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3141,345,0 chrXVI 618855 . G A 3909.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.84;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3909,429,0 chrXVI 618915 . G A 2920 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.36;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2953,321,0 chrXVI 619062 . G A 2017 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=9.3529;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=24.30;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2050,222,0 chrXVI 619146 . T C 89.98 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.453;DP=82;Dels=0.00;FS=2.963;HaplotypeScore=131.4073;MLEAC=1;MLEAF=0.500;MQ=43.41;MQ0=0;MQRankSum=2.520;QD=1.10;ReadPosRankSum=-4.185;SB=-7.978e+00 GT:AD:DP:GQ:PL 0/1:71,10:82:3:119,0,3 chrXVI 619158 . G A 1306 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=59.5666;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;QD=16.96;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1339,147,0 chrXVI 619169 . A G 1313 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;QD=17.28;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1346,153,0 chrXVI 619252 . T G 1452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.990;QD=20.74;ReadPosRankSum=1.683;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1485,168,0 chrXVI 619267 . C T 1573 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=20.17;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1606,171,0 chrXVI 619292 . C T 1462 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.49;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1495,162,0 chrXVI 619344 . C A 2242 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=22.65;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2275,249,0 chrXVI 619408 . A G 2314 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=22.47;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2347,258,0 chrXVI 619457 . C T 1866 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=23.32;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1899,204,0 chrXVI 619477 . A G 1936 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=21.51;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1969,219,0 chrXVI 619527 . G T 2127 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=21.93;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2160,231,0 chrXVI 619549 . T C 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=8.078;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=-0.199;QD=21.19;ReadPosRankSum=2.397;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2004,228,0 chrXVI 619565 . G C 2132 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=20.30;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2165,246,0 chrXVI 619612 . A T 2041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=104;Dels=0.00;FS=12.648;HaplotypeScore=6.8429;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-0.397;QD=19.62;ReadPosRankSum=3.220;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:4,100:104:99:2074,228,0 chrXVI 619659 . A G 2166 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=21.24;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2199,249,0 chrXVI 619680 . C T 1980 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=21.76;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2013,222,0 chrXVI 619704 . A G 2041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=96;Dels=0.00;FS=6.067;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.34;MQ0=0;MQRankSum=-1.244;QD=21.26;ReadPosRankSum=2.398;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2074,240,0 chrXVI 619747 . A G 2558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=3.979;HaplotypeScore=8.6698;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;MQRankSum=-0.346;QD=24.13;ReadPosRankSum=1.699;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2591,291,0 chrXVI 619779 . T C 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;MQRankSum=0.899;QD=22.60;ReadPosRankSum=1.632;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2383,273,0 chrXVI 619798 . G A 2556 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=23.67;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2589,276,0 chrXVI 619873 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=22.07;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2174,237,0 chrXVI 619887 . A G 1952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=3.372;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;MQRankSum=-0.381;QD=19.52;ReadPosRankSum=1.663;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1985,228,0 chrXVI 619894 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;QD=20.09;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1982,216,0 chrXVI 619910 . C A 1704 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5310;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=0;QD=16.71;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1737,189,0 chrXVI 619974 . A G 1655 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=40.44;MQ0=0;QD=14.78;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1688,186,0 chrXVI 620016 . C A 1774 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=18.87;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1807,195,0 chrXVI 620115 . A G 1919 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.5653;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=21.56;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1952,219,0 chrXVI 620227 . C T 1039 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=19.60;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1072,117,0 chrXVI 620415 . G A 1498 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.05;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1531,165,0 chrXVI 620644 . G T 2637 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2670,288,0 chrXVI 620737 . C T 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=126;Dels=0.00;FS=4.342;HaplotypeScore=9.8567;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.510;QD=23.90;ReadPosRankSum=-0.624;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3045,313,0 chrXVI 620821 . G T 3726.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.00;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3726,414,0 chrXVI 620863 . T C 4362.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=13.1084;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.365;QD=22.72;ReadPosRankSum=-0.541;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:1,188:192:99:4362,492,0 chrXVI 621037 . T A 4560.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=188;Dels=0.00;FS=3.081;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.306;QD=24.26;ReadPosRankSum=1.639;SB=-2.373e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:4560,501,0 chrXVI 621160 . G A 3131 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.2686;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.21;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3164,351,0 chrXVI 621305 . T G 4145.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=172;Dels=0.00;FS=3.663;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.611;QD=24.10;ReadPosRankSum=1.672;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4145,462,0 chrXVI 621334 . T G 3831.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.22;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3831,432,0 chrXVI 621480 . T C 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.714;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.532;QD=21.64;ReadPosRankSum=1.678;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2825,327,0 chrXVI 621612 . C G 3339.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0792;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.11;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3339,384,0 chrXVI 621697 . T C 2535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=0.142;QD=20.78;ReadPosRankSum=1.647;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2568,300,0 chrXVI 621836 . G C 2271 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3168;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=22.05;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2304,264,0 chrXVI 621855 . A T 1884 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=21.91;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1917,210,0 chrXVI 621917 . G A 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;DP=93;Dels=0.00;FS=26.556;HaplotypeScore=15.7736;MLEAC=1;MLEAF=0.500;MQ=43.12;MQ0=0;MQRankSum=-1.252;QD=0.32;ReadPosRankSum=-3.637;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,10:93:60:60,0,430 chrXVI 621920 . G A 675 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=16.6558;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;QD=7.03;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,90:96:78:708,78,0 chrXVI 622050 . G A 1272 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;QD=16.74;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1305,141,0 chrXVI 622057 . A G 1056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=6.255;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.56;MQ0=0;MQRankSum=-1.094;QD=13.89;ReadPosRankSum=1.687;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1089,123,0 chrXVI 622071 . A G 870 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.24;MQ0=0;QD=11.60;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:903,102,0 chrXVI 622074 . T C 890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;MQRankSum=-1.466;QD=11.41;ReadPosRankSum=1.688;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:923,105,0 chrXVI 622087 . T G 945 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.78;MQ0=0;QD=10.38;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:978,114,0 chrXVI 622097 . T A 1567 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;QD=14.25;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1600,180,0 chrXVI 622243 . T C 2588 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=21.93;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2621,291,0 chrXVI 622365 . G C 2050 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;QD=19.34;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2083,240,0 chrXVI 622376 . A C 1894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;MQRankSum=-1.167;QD=19.33;ReadPosRankSum=1.661;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1927,210,0 chrXVI 622409 . G T 1552 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=19.16;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1585,171,0 chrXVI 622429 . A G 1713 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.1436;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;QD=19.25;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1746,201,0 chrXVI 622481 . A G 1906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;MQRankSum=-0.330;QD=22.69;ReadPosRankSum=1.691;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1939,216,0 chrXVI 622687 . A T 389 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;QD=8.28;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:45:422,45,0 chrXVI 622693 . T C 433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.053;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;MQRankSum=-1.214;QD=7.73;ReadPosRankSum=2.362;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,54:56:51:466,51,0 chrXVI 622781 . G C 2479 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=24.07;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2512,282,0 chrXVI 622904 . T A 3126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=149;Dels=0.00;FS=2.719;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=0.338;QD=20.98;ReadPosRankSum=2.351;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3159,357,0 chrXVI 622919 . A C 3123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.562;QD=20.28;ReadPosRankSum=1.994;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:2,150:154:99:3156,354,0 chrXVI 622932 . T C 3402.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.1240;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.25;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3402,375,0 chrXVI 623041 . T G 2769 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=4.973;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;MQRankSum=0.262;QD=20.98;ReadPosRankSum=1.706;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2802,324,0 chrXVI 623043 . T C 2644 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=138;Dels=0.01;FS=10.072;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;MQRankSum=-0.063;QD=19.16;ReadPosRankSum=2.305;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2677,306,0 chrXVI 623045 . C T 2649 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=19.20;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2682,303,0 chrXVI 623051 . A C 2821 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;MQRankSum=0.725;QD=20.01;ReadPosRankSum=1.708;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2854,336,0 chrXVI 623220 . G A 1540 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=12.8471;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=14.53;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1573,177,0 chrXVI 623258 . G A 1745 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=18.76;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1778,198,0 chrXVI 623271 . T G 1706 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=84.1799;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=17.06;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1739,201,0 chrXVI 623637 . G A 2782 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.91;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2815,309,0 chrXVI 623671 . A C 3121 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.53;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3154,363,0 chrXVI 623705 . C T 3319.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=6.8164;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3319,360,0 chrXVI 624175 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3332,378,0 chrXVI 624238 . G C 3894.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.51;SB=-1.982e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3894,429,0 chrXVI 624388 . A T 2778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=2.982;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.606;QD=20.43;ReadPosRankSum=2.395;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2811,300,0 chrXVI 624466 . T A 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=3.840;HaplotypeScore=6.6346;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.230;QD=21.86;ReadPosRankSum=1.657;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3049,336,0 chrXVI 624496 . G A 3063 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.86;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3096,333,0 chrXVI 624739 . G A 4414.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.204;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.8631;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.147;QD=24.25;ReadPosRankSum=-0.656;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:4414,461,0 chrXVI 624882 . C G 3600.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=9.4518;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.95;SB=-1.995e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3600,405,0 chrXVI 625038 . G A 3121 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3154,345,0 chrXVI 625108 . C A 3634.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.8660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3634,402,0 chrXVI 625590 . A G 2794 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.33;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2827,315,0 chrXVI 625606 . A T 3271.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.40;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3271,351,0 chrXVI 626374 . G A 3008 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.7642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.62;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3041,330,0 chrXVI 626641 . G A 3221.92 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.35;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3255,354,0 chrXVI 626923 . G A 3322.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.60;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3322,366,0 chrXVI 627121 . C A 3349.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.18;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3349,375,0 chrXVI 627237 . A T 3934.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=25.22;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3934,435,0 chrXVI 627340 . T A 2931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=0.982;QD=21.87;ReadPosRankSum=1.680;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2964,327,0 chrXVI 627372 . T C 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;MQRankSum=-0.240;QD=17.91;ReadPosRankSum=1.656;SB=-1.640e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2523,282,0 chrXVI 627414 . A T 2014 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;QD=14.18;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2047,219,0 chrXVI 627421 . G A 2114 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.05;MQ0=0;QD=15.21;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2147,231,0 chrXVI 627426 . G A 1818 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.51;MQ0=0;QD=13.98;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1851,204,0 chrXVI 627437 . A T 1828 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=15.23;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1861,201,0 chrXVI 627439 . C T 1797 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=36.84;MQ0=0;QD=14.61;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1830,201,0 chrXVI 627508 . T G 1994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=3.874;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;MQRankSum=0.426;QD=16.34;ReadPosRankSum=1.704;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2027,234,0 chrXVI 627514 . C G 1945 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=16.62;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1978,234,0 chrXVI 627537 . C G 1840 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=3.5538;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=16.00;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1873,216,0 chrXVI 627833 . G A 3945.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.07;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3945,441,0 chrXVI 627865 . T C 4292.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-0.474;QD=22.47;ReadPosRankSum=1.714;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:4292,495,0 chrXVI 627889 . A G 4698.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=208;Dels=0.00;FS=6.326;HaplotypeScore=13.6908;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.043;QD=22.59;ReadPosRankSum=1.682;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,205:208:99:4698,543,0 chrXVI 628182 . G A 5966.01 PASS AC=2;AF=1.00;AN=2;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.40;SB=-3.301e+03 GT:AD:DP:GQ:PL 1/1:0,253:255:99:5966,646,0 chrXVI 628338 . A C 3599.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=173;Dels=0.00;FS=10.844;HaplotypeScore=5.9448;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-1.924;QD=20.80;ReadPosRankSum=2.379;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3599,411,0 chrXVI 628342 . C A 3734.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.02;FS=0.000;HaplotypeScore=6.7882;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.98;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,174:175:99:3734,405,0 chrXVI 628959 . G A 4013.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.29;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4013,450,0 chrXVI 629034 . T C 4251.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=5.0682;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.778;QD=21.69;ReadPosRankSum=1.697;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:1,195:196:99:4251,471,0 chrXVI 629043 . C G 4178.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.3175;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.54;SB=-2.298e+03 GT:AD:DP:GQ:PL 1/1:0,193:194:99:4178,483,0 chrXVI 629640 . G C 3199 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.53;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,138:142:99:3232,360,0 chrXVI 629722 . A C 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=104;Dels=0.00;FS=6.765;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.030;QD=20.45;ReadPosRankSum=2.331;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2160,243,0 chrXVI 630133 . T C 3045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=3.188;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.291;QD=24.17;ReadPosRankSum=1.704;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:3078,336,0 chrXVI 630828 . T C 3534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.5116;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.158;QD=21.55;ReadPosRankSum=1.690;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3534,402,0 chrXVI 630856 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.9211;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.03;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3635,396,0 chrXVI 630950 . G A 4100.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=15.1080;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.69;SB=-1.900e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:4100,447,0 chrXVI 631377 . G A 940 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.97;MQ0=0;QD=13.62;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:973,108,0 chrXVI 631527 . T G 3981.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=25.36;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3981,447,0 chrXVI 631583 . T C 2904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-0.819;QD=22.17;ReadPosRankSum=1.705;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2937,339,0 chrXVI 631725 . T C 3912.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=4.771;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.460;QD=22.10;ReadPosRankSum=1.713;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3912,435,0 chrXVI 631831 . A G 3620.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.048;QD=22.91;ReadPosRankSum=1.644;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:1,156:158:99:3620,408,0 chrXVI 631986 . A G 2494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=129;Dels=0.00;FS=3.006;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.183;QD=19.33;ReadPosRankSum=2.315;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2527,291,0 chrXVI 632897 . T C 3203 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3236,369,0 chrXVI 633458 . T A 2094 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2127,231,0 chrXVI 633533 . C T 2272 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2305,255,0 chrXVI 634032 . A G 2560 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2593,294,0 chrXVI 634987 . A G 5577.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=16.9450;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.13;SB=-2.530e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:5577,636,0 chrXVI 635040 . C A 5458.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=11.4240;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.23;SB=-2.659e+03 GT:AD:DP:GQ:PL 1/1:0,233:234:99:5458,603,0 chrXVI 635109 . T C 4384.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=11.1934;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.25;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4384,498,0 chrXVI 635531 . C T 5285.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.81;SB=-2.513e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:5285,568,0 chrXVI 635876 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=148;Dels=0.00;FS=2.881;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.951;QD=22.19;ReadPosRankSum=2.416;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:2,144:148:99:3284,372,0 chrXVI 635980 . G A 3880.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.2876;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.05;SB=-2.231e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3880,426,0 chrXVI 636800 . T A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.95;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3310,363,0 chrXVI 636804 . G A 3198 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.50;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3231,351,0 chrXVI 637454 . A G 4228.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,175:177:99:4228,483,0 chrXVI 637526 . T C 5055.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;DP=218;Dels=0.00;FS=2.577;HaplotypeScore=7.9085;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.445;QD=23.19;ReadPosRankSum=2.393;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:2,216:218:99:5055,579,0 chrXVI 638099 . C T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.5159;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.99;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3770,408,0 chrXVI 638341 . C T 3895.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.9678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3895,420,0 chrXVI 638483 . G A 4394.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4394,492,0 chrXVI 638684 . C T 4604.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=16.8278;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.61;SB=-2.385e+03 GT:AD:DP:GQ:PL 1/1:0,192:195:99:4604,510,0 chrXVI 638780 . A G 4461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.154;DP=213;Dels=0.00;FS=8.795;HaplotypeScore=15.0629;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.798;QD=20.94;ReadPosRankSum=3.419;SB=-2.174e+03 GT:AD:DP:GQ:PL 1/1:4,207:213:99:4461,516,0 chrXVI 638861 . C T 4976.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=16.0507;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.31;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:4976,558,0 chrXVI 638918 . A G 4709.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.97;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4709,534,0 chrXVI 638923 . T C 4668.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.425;DP=201;Dels=0.00;FS=3.014;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.253;QD=23.22;ReadPosRankSum=2.388;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:2,198:201:99:4668,531,0 chrXVI 639081 . T A 3636.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=176;Dels=0.00;FS=5.643;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.634;QD=20.66;ReadPosRankSum=1.653;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3636,405,0 chrXVI 639173 . A T 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.008;DP=141;Dels=0.00;FS=4.923;HaplotypeScore=17.1211;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=1.207;QD=20.31;ReadPosRankSum=2.508;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:4,137:141:99:2897,324,0 chrXVI 639417 . C T 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.776;DP=149;Dels=0.02;FS=3.011;HaplotypeScore=43.2848;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;MQRankSum=-1.120;QD=15.79;ReadPosRankSum=1.860;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2386,244,0 chrXVI 639423 . C G 2508 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=11.4866;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=15.77;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2541,285,0 chrXVI 639626 . C T 4012.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=2.7661;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.67;SB=-1.999e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:4012,438,0 chrXVI 639648 . G A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=21.78;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4204,465,0 chrXVI 639980 . T C 6253.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=324;Dels=0.00;FS=6.020;HaplotypeScore=19.7605;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.386;QD=19.30;ReadPosRankSum=2.947;SB=-3.871e+03 GT:AD:DP:GQ:PL 1/1:3,319:324:99:6253,714,0 chrXVI 640589 . A G 3533.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=30.6379;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.69;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,188:189:99:3533,425,0 chrXVI 640976 . C A 4321.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.5532;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.08;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4321,480,0 chrXVI 640998 . A G 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.0998;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-1.272;QD=19.91;ReadPosRankSum=1.688;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3199,363,0 chrXVI 641225 . T C 3707.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.23;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3707,429,0 chrXVI 641294 . A G 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=4.061;HaplotypeScore=8.3975;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.570;QD=20.95;ReadPosRankSum=1.700;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2275,270,0 chrXVI 641459 . C G 3027 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.73;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3060,351,0 chrXVI 641549 . G A 3357.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.2923;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.38;SB=-1.794e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3357,366,0 chrXVI 641691 . A G 2909 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9109;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.20;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2942,336,0 chrXVI 641862 . A G 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.678;QD=23.61;ReadPosRankSum=1.705;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:3079,342,0 chrXVI 642054 . G A 1170 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.50;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1203,129,0 chrXVI 642177 . T A 769 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.24;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:802,87,0 chrXVI 642462 . C T 5628.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=14.5452;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=23.55;SB=-2.237e+03 GT:AD:DP:GQ:PL 1/1:0,239:239:99:5628,615,0 chrXVI 642789 . C T 6352.01 PASS AC=2;AF=1.00;AN=2;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=24.4874;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.37;SB=-3.422e+03 GT:AD:DP:GQ:PL 1/1:0,283:284:99:6352,711,0 chrXVI 643443 . T G 748 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.70;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:90:781,90,0 chrXVI 643489 . A C 422 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:51:455,51,0 chrXVI 643790 . A G 2342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=5.848;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.014;QD=18.89;ReadPosRankSum=1.704;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2375,267,0 chrXVI 643795 . A C 2263 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=18.40;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2296,267,0 chrXVI 644225 . G T 5361.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.72;SB=-2.179e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:5361,582,0 chrXVI 644568 . C T 4721.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=11.2454;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.89;SB=-2.569e+03 GT:AD:DP:GQ:PL 1/1:0,224:226:99:4721,537,0 chrXVI 644801 . A G 6452.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=296;Dels=0.00;FS=3.841;HaplotypeScore=22.7714;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.219;QD=21.80;ReadPosRankSum=1.720;SB=-3.009e+03 GT:AD:DP:GQ:PL 1/1:1,293:296:99:6452,750,0 chrXVI 645395 . G T 3704.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=23.90;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3704,411,0 chrXVI 645683 . G T 2981 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.1479;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.23;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3014,333,0 chrXVI 645864 . T C 3536.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.96;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3536,405,0 chrXVI 645899 . C A 3769.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.27;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,160:162:99:3769,408,0 chrXVI 646196 . C T 1548 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=15.96;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1581,174,0 chrXVI 646392 . A T 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;DP=27;Dels=0.00;FS=37.992;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=47.66;MQ0=0;MQRankSum=2.960;QD=0.53;ReadPosRankSum=-0.415;SB=0.101 GT:AD:DP:GQ:PL 0/1:20,7:27:44:44,0,176 chrXVI 646408 . T G 428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=56.7266;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;MQRankSum=-1.797;QD=7.93;ReadPosRankSum=2.357;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:2,51:53:51:461,51,0 chrXVI 646670 . T C 6177.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.851;DP=292;Dels=0.00;FS=24.542;HaplotypeScore=25.5863;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.757;QD=21.15;ReadPosRankSum=4.086;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:6,285:292:99:6177,708,0 chrXVI 647322 . T C 4798.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=206;Dels=0.00;FS=2.818;HaplotypeScore=11.1830;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.983;QD=23.29;ReadPosRankSum=2.414;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:2,204:206:99:4798,537,0 chrXVI 647352 . T C 4749.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.594;DP=225;Dels=0.00;FS=7.975;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-1.766;QD=21.11;ReadPosRankSum=3.790;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:5,219:225:99:4749,540,0 chrXVI 647623 . T C 5094.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=14.5571;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.30;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:5094,573,0 chrXVI 647721 . T C 3930.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=177;Dels=0.00;FS=6.349;HaplotypeScore=15.2727;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.049;QD=22.20;ReadPosRankSum=2.422;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3930,444,0 chrXVI 647859 . G A 5747.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=10.9208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.46;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:5747,630,0 chrXVI 648123 . A G 5700.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.704;DP=260;Dels=0.00;FS=12.211;HaplotypeScore=28.5037;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.220;QD=21.92;ReadPosRankSum=3.795;SB=-3.063e+03 GT:AD:DP:GQ:PL 1/1:5,254:260:99:5700,657,0 chrXVI 648390 . A T 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.715;DP=167;Dels=0.00;FS=5.736;HaplotypeScore=14.4722;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.982;QD=20.87;ReadPosRankSum=2.024;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:3,164:167:99:3485,387,0 chrXVI 648631 . T C 2661 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.5372;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.01;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2694,306,0 chrXVI 649375 . G T 5902.01 PASS AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=12.1504;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.21;SB=-3.406e+03 GT:AD:DP:GQ:PL 1/1:0,292:292:99:5902,651,0 chrXVI 649438 . C T 4809.01 PASS AC=2;AF=1.00;AN=2;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.87;SB=-2.193e+03 GT:AD:DP:GQ:PL 1/1:0,241:242:99:4809,537,0 chrXVI 649447 . G A 4797.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=5.7889;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=19.90;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,241:241:99:4797,528,0 chrXVI 649499 . T C 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=175;Dels=0.00;FS=10.894;HaplotypeScore=9.3293;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=1.842;QD=19.29;ReadPosRankSum=2.407;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:2,172:175:99:3375,381,0 chrXVI 649597 . G A 4297.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.9584;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.74;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4297,465,0 chrXVI 649723 . C T 3536.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.1941;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.26;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3536,384,0 chrXVI 649759 . T C 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.501;QD=23.69;ReadPosRankSum=1.686;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3553,408,0 chrXVI 649819 . T C 2160 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.60;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2193,255,0 chrXVI 650522 . A G 41.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.684;DP=9;Dels=0.00;FS=3.332;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;MQRankSum=0.956;QD=4.66;ReadPosRankSum=-0.956;SB=2.03 GT:AD:DP:GQ:PL 1/1:5,3:9:9:74,9,0 chrXVI 651044 . T C 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=144;Dels=0.00;FS=8.570;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.265;QD=19.98;ReadPosRankSum=2.415;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2910,339,0 chrXVI 651104 . T C 2903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=141;Dels=0.00;FS=3.627;HaplotypeScore=9.0380;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.095;QD=20.59;ReadPosRankSum=1.707;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:1,135:141:99:2936,333,0 chrXVI 651674 . T C 3984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=170;Dels=0.00;FS=3.034;HaplotypeScore=15.9846;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.739;QD=23.44;ReadPosRankSum=2.420;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:3984,444,0 chrXVI 651827 . C T 3839.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.99;SB=-2.005e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3839,414,0 chrXVI 651959 . A T 3560.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.963e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3560,399,0 chrXVI 652058 . A G 4191.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.90;SB=-2.219e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:4191,483,0 chrXVI 652135 . G A 3835.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.8196;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.10;SB=-2.007e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3835,420,0 chrXVI 652186 . T C 4360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=15.3521;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.992;QD=22.36;ReadPosRankSum=1.696;SB=-1.946e+03 GT:AD:DP:GQ:PL 1/1:1,191:195:99:4360,492,0 chrXVI 652661 . C T 5199.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=14.2647;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.80;SB=-2.232e+03 GT:AD:DP:GQ:PL 1/1:0,226:228:99:5199,567,0 chrXVI 652898 . A G 3603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=174;Dels=0.00;FS=3.032;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.101;QD=20.71;ReadPosRankSum=2.350;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3603,423,0 chrXVI 652991 . C G 3631.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=12.0169;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.74;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3631,411,0 chrXVI 653051 . C T 3894.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3894,432,0 chrXVI 653426 . G A 5163.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=17.7601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-2.279e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5163,564,0 chrXVI 653739 . T C 2998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=3.878;HaplotypeScore=4.3627;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=1.432;QD=23.61;ReadPosRankSum=1.705;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3031,345,0 chrXVI 653760 . G C 3030 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=22.61;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3063,345,0 chrXVI 653803 . C T 2693 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=20.10;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2726,303,0 chrXVI 653824 . C T 2411 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=19.29;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2444,264,0 chrXVI 653867 . T C 1568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=99;Dels=0.00;FS=9.369;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;MQRankSum=-1.007;QD=15.84;ReadPosRankSum=2.375;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1601,180,0 chrXVI 653882 . A G 1810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;MQRankSum=0.162;QD=18.10;ReadPosRankSum=2.400;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:2,97:100:99:1843,207,0 chrXVI 653959 . A T 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;DP=87;Dels=0.00;FS=22.493;HaplotypeScore=114.3887;MLEAC=1;MLEAF=0.500;MQ=48.22;MQ0=0;MQRankSum=0.521;QD=0.24;ReadPosRankSum=-5.331;SB=-5.901e+01 GT:AD:DP:GQ:PL 0/1:58,29:87:51:51,0,56 chrXVI 654180 . A G 3162 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.75;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3195,357,0 chrXVI 654320 . G A 2707 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.98;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2740,306,0 chrXVI 654333 . G A 2688 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.17;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2721,291,0 chrXVI 654370 . C T 2204 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=19.00;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2237,246,0 chrXVI 654445 . T C 2797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=121;Dels=0.00;FS=7.217;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.189;QD=23.12;ReadPosRankSum=2.368;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2830,321,0 chrXVI 654906 . A T 505 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.95;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:60:538,60,0 chrXVI 654952 . C T 532 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.34;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:63:565,63,0 chrXVI 655035 . A G 607 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:75:640,75,0 chrXVI 655349 . C T 2417 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.39;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2450,273,0 chrXVI 655575 . A C 2697 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2730,306,0 chrXVI 656010 . A G 4735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=209;Dels=0.00;FS=8.401;HaplotypeScore=14.3970;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.623;QD=22.66;ReadPosRankSum=2.414;SB=-1.842e+03 GT:AD:DP:GQ:PL 1/1:2,205:209:99:4735,531,0 chrXVI 656181 . A G 4951.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=241;Dels=0.00;FS=3.101;HaplotypeScore=9.2603;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.631;QD=20.54;ReadPosRankSum=1.675;SB=-3.006e+03 GT:AD:DP:GQ:PL 1/1:1,240:241:99:4951,579,0 chrXVI 656364 . A T 5602.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.84;SB=-2.780e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:5602,606,0 chrXVI 656445 . G A 2666 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=17.66;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2699,294,0 chrXVI 656448 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=17.08;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2646,291,0 chrXVI 656562 . G A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=18.12;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3316,369,0 chrXVI 656563 . G A 3443.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=19.23;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3443,375,0 chrXVI 656677 . C T 4700.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.8315;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=24.35;SB=-2.562e+03 GT:AD:DP:GQ:PL 1/1:0,192:193:99:4700,501,0 chrXVI 656784 . A G 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.622;QD=21.36;ReadPosRankSum=1.710;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,157:160:99:3418,402,0 chrXVI 656861 . G A 3891.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.87;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3891,423,0 chrXVI 657002 . T G 3533.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.110;DP=160;Dels=0.00;FS=2.874;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.244;QD=22.08;ReadPosRankSum=2.419;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,157:160:99:3533,402,0 chrXVI 657231 . A G 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.247;DP=150;Dels=0.00;FS=5.850;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=1.155;QD=22.59;ReadPosRankSum=0.092;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3388,368,0 chrXVI 657242 . T A 3722.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=24.17;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3722,402,0 chrXVI 657450 . G T 2181 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=17.88;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2214,243,0 chrXVI 657485 . A G 2065 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=15.07;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2098,234,0 chrXVI 657494 . G A 1864 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;QD=13.91;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1897,207,0 chrXVI 657502 . A C 1531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.364;DP=132;Dels=0.00;FS=2.319;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;MQRankSum=-1.490;QD=11.60;ReadPosRankSum=3.161;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:4,126:132:99:1564,163,0 chrXVI 657509 . T G 1498 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=11.89;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1531,180,0 chrXVI 658096 . T C 2523 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.02;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2556,291,0 chrXVI 658293 . T C 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=124;Dels=0.00;FS=3.027;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.554;QD=21.46;ReadPosRankSum=2.409;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:2,120:124:99:2694,306,0 chrXVI 658323 . C T 3036 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.53;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3069,342,0 chrXVI 658350 . A G 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=142;Dels=0.00;FS=4.168;HaplotypeScore=8.8835;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.135;QD=21.94;ReadPosRankSum=1.536;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3148,363,0 chrXVI 658638 . T G 2876 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.1716;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.30;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2909,342,0 chrXVI 659304 . T C 3592.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=185;Dels=0.00;FS=3.277;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.421;QD=19.42;ReadPosRankSum=1.713;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3592,414,0 chrXVI 659394 . C T 5312.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=12.0091;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.00;SB=-2.740e+03 GT:AD:DP:GQ:PL 1/1:0,229:231:99:5312,597,0 chrXVI 659460 . G A 3288.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.21;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3288,357,0 chrXVI 659469 . C G 3085 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=19.65;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3118,354,0 chrXVI 659822 . C A 3057 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.99;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3090,336,0 chrXVI 660020 . G A 2682 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.29;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2715,294,0 chrXVI 660028 . G A 2699 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=3.8562;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.09;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2732,300,0 chrXVI 660066 . A G 3299.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=15.1829;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=20.24;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3299,393,0 chrXVI 660101 . A T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.99;SB=-1.923e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3622,393,0 chrXVI 660556 . C G 2300 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2333,261,0 chrXVI 660697 . C T 2396 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.26;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2429,264,0 chrXVI 660987 . A G 1962 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.30;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1995,222,0 chrXVI 661094 . C T 2102 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.02;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2135,234,0 chrXVI 661245 . A T 2659 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.95;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2692,294,0 chrXVI 661816 . T A 2612 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.32;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2645,285,0 chrXVI 662132 . A C 2890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=4.143;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.962;QD=21.41;ReadPosRankSum=1.655;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2923,339,0 chrXVI 662163 . G A 2481 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=19.54;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2514,276,0 chrXVI 662248 . C T 4171.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.67;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4171,453,0 chrXVI 662322 . C T 3220.05 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.17;SB=-2.049e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3253,363,0 chrXVI 662326 . T C 2888 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=18.39;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:2921,336,0 chrXVI 662648 . G C 2531 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3984;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.09;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,116:120:99:2564,303,0 chrXVI 662675 . C T 3003 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.28;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3036,336,0 chrXVI 662874 . T C 2490 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2523,279,0 chrXVI 663036 . A G 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=104;Dels=0.00;FS=6.149;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.833;QD=22.66;ReadPosRankSum=2.853;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:3,100:104:99:2390,273,0 chrXVI 663543 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3017,324,0 chrXVI 663663 . T C 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.401;QD=20.74;ReadPosRankSum=1.642;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2418,276,0 chrXVI 663708 . C T 1892 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.9195;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.51;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1925,213,0 chrXVI 664041 . G A 3448.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=12.5874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3448,372,0 chrXVI 664678 . T C 3913.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=183;Dels=0.00;FS=4.495;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.126;QD=21.38;ReadPosRankSum=1.713;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3913,444,0 chrXVI 664781 . T C 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.478;QD=22.57;ReadPosRankSum=1.709;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3385,375,0 chrXVI 664861 . G A 3298.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=22.28;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3298,369,0 chrXVI 664914 . A G 3510.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=14.2129;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=22.65;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3510,402,0 chrXVI 665235 . G A 5621.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.32;SB=-2.059e+03 GT:AD:DP:GQ:PL 1/1:0,239:241:99:5621,607,0 chrXVI 665344 . T C 2209 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.72;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2242,249,0 chrXVI 665361 . T G 1708 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.57;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1741,201,0 chrXVI 665441 . A G 1869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.1452;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.119;QD=20.10;ReadPosRankSum=0.490;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1902,216,0 chrXVI 665472 . T C 1602 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1635,195,0 chrXVI 665970 . A G 3610.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3610,408,0 chrXVI 666054 . T G 3713.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=170;Dels=0.00;FS=5.311;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.292;QD=21.84;ReadPosRankSum=2.947;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:3,166:170:99:3713,426,0 chrXVI 666095 . C T 4680.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.25;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:4680,507,0 chrXVI 666286 . T C 5818.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=12.0584;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.38;SB=-2.647e+03 GT:AD:DP:GQ:PL 1/1:0,259:260:99:5818,678,0 chrXVI 666333 . C T 4954.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=16.9481;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.399;QD=21.54;ReadPosRankSum=-1.303;SB=-2.761e+03 GT:AD:DP:GQ:PL 1/1:1,228:230:99:4954,540,0 chrXVI 666828 . C T 4160.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.19;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:4160,453,0 chrXVI 666888 . G A 3804.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.38;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,168:170:99:3804,411,0 chrXVI 666903 . C T 3511.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=21.28;SB=-2.211e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3511,381,0 chrXVI 666924 . T C 3176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=3.340;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.739;QD=19.37;ReadPosRankSum=1.711;SB=-1.905e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3209,369,0 chrXVI 667335 . T C 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=147;Dels=0.00;FS=6.071;HaplotypeScore=11.8913;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.407;QD=20.55;ReadPosRankSum=2.952;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:3,143:147:99:3054,339,0 chrXVI 667416 . C T 3509.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.49;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3509,390,0 chrXVI 667477 . G T 3389.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.1824;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.72;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,151:156:99:3389,363,0 chrXVI 667491 . G A 3359.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.1125;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.25;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3359,366,0 chrXVI 667536 . C G 1803 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=11.0324;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.39;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1836,210,0 chrXVI 667654 . C T 3589.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=3.216;HaplotypeScore=4.9792;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.480;QD=23.77;ReadPosRankSum=1.709;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3589,393,0 chrXVI 668437 . C T 3575.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=22.63;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3575,393,0 chrXVI 668452 . A G 3315.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=4.613;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.364;QD=20.46;ReadPosRankSum=1.711;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3315,375,0 chrXVI 668458 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=20.48;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3400,372,0 chrXVI 668615 . C T 4457.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=25.18;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4457,478,0 chrXVI 668875 . C T 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.198;QD=23.07;ReadPosRankSum=1.626;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3101,336,0 chrXVI 669013 . T C 2724 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.08;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2757,324,0 chrXVI 669064 . C T 2296 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.73;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2329,258,0 chrXVI 669226 . A C 2721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=120;Dels=0.00;FS=4.421;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.830;QD=22.67;ReadPosRankSum=1.703;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2754,309,0 chrXVI 669556 . T C 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.060;QD=21.92;ReadPosRankSum=1.629;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2992,333,0 chrXVI 669627 . T A 2848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=3.656;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.084;QD=23.15;ReadPosRankSum=1.648;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2881,315,0 chrXVI 670534 . A G 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=3.948;HaplotypeScore=6.4427;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.707;QD=23.09;ReadPosRankSum=1.682;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3266,381,0 chrXVI 670810 . C G 2978 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3011,348,0 chrXVI 670986 . C T 3391.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3391,369,0 chrXVI 671194 . A G 4693.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.160;QD=23.23;ReadPosRankSum=1.680;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:4693,543,0 chrXVI 671245 . T C 4262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=188;Dels=0.00;FS=7.038;HaplotypeScore=8.8124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.129;QD=22.67;ReadPosRankSum=2.423;SB=-2.173e+03 GT:AD:DP:GQ:PL 1/1:2,184:188:99:4262,498,0 chrXVI 671806 . G A 4083.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=24.02;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4083,441,0 chrXVI 671824 . C T 3832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=170;Dels=0.00;FS=3.477;HaplotypeScore=10.5353;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.322;QD=22.54;ReadPosRankSum=-0.052;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,166:170:99:3832,423,0 chrXVI 671978 . G A 4416.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.40;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:4416,477,0 chrXVI 672085 . G A 3907.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.8881;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.72;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3907,432,0 chrXVI 672182 . T C 4298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=194;Dels=0.00;FS=11.339;HaplotypeScore=18.1757;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.696;QD=22.15;ReadPosRankSum=2.943;SB=-2.042e+03 GT:AD:DP:GQ:PL 1/1:3,190:194:99:4298,477,0 chrXVI 672569 . T C 5934.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=273;Dels=0.00;FS=2.658;HaplotypeScore=18.4835;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=-0.659;QD=21.74;ReadPosRankSum=1.650;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:2,268:273:99:5934,662,0 chrXVI 672668 . C T 5457.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.80;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:5457,594,0 chrXVI 672779 . G T 5030.01 PASS AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=21.13;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:0,236:238:99:5030,546,0 chrXVI 672797 . C T 4500.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=19.40;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:0,230:232:99:4500,486,0 chrXVI 672815 . G C 3942.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;QD=18.00;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:3942,467,0 chrXVI 672828 . G A 4071.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=18.85;SB=-1.825e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:4071,444,0 chrXVI 672860 . C G 3754.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.4050;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.96;SB=-2.262e+03 GT:AD:DP:GQ:PL 1/1:0,196:198:99:3754,423,0 chrXVI 672902 . A T 4670.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=201;Dels=0.00;FS=3.030;HaplotypeScore=17.5962;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.043;QD=23.23;ReadPosRankSum=2.413;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:2,199:201:99:4670,516,0 chrXVI 672984 . A G 3415.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=158;Dels=0.00;FS=6.220;HaplotypeScore=7.6309;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=-0.864;QD=21.61;ReadPosRankSum=2.418;SB=-1.904e+03 GT:AD:DP:GQ:PL 1/1:2,154:158:99:3415,378,0 chrXVI 672989 . T C 3046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.027;DP=158;Dels=0.00;FS=3.024;HaplotypeScore=9.5202;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=1.025;QD=19.28;ReadPosRankSum=1.307;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3079,351,0 chrXVI 673059 . A C 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=160;Dels=0.00;FS=6.104;HaplotypeScore=9.2973;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=0.743;QD=22.97;ReadPosRankSum=2.387;SB=-1.996e+03 GT:AD:DP:GQ:PL 1/1:2,155:160:99:3675,414,0 chrXVI 673106 . C T 4382.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=23.82;SB=-2.284e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:4382,489,0 chrXVI 673135 . A G 3938.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.06;SB=-2.291e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3938,444,0 chrXVI 673136 . A T 3948.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-0.964;QD=21.34;ReadPosRankSum=1.695;SB=-2.250e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3948,438,0 chrXVI 673678 . A G 3788.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.82;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3788,450,0 chrXVI 673707 . C T 4921.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.12;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4921,534,0 chrXVI 673927 . A G 4812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=15.2859;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.732;QD=20.74;ReadPosRankSum=1.717;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:1,230:232:99:4812,558,0 chrXVI 674290 . A G 6759.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=285;Dels=0.00;FS=2.840;HaplotypeScore=8.8544;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.395;QD=23.72;ReadPosRankSum=2.424;SB=-2.908e+03 GT:AD:DP:GQ:PL 1/1:2,281:285:99:6759,765,0 chrXVI 674320 . A G 6777.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.397;DP=300;Dels=0.00;FS=5.221;HaplotypeScore=14.3612;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.469;QD=22.59;ReadPosRankSum=3.368;SB=-2.877e+03 GT:AD:DP:GQ:PL 1/1:4,295:300:99:6777,765,0 chrXVI 674536 . C T 3186 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.67;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3219,360,0 chrXVI 674569 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=16.2604;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.35;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2873,315,0 chrXVI 674810 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=23.10;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3244,360,0 chrXVI 674834 . G A 2717 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=20.58;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2750,294,0 chrXVI 674847 . G C 2344 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.5221;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=20.74;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2377,273,0 chrXVI 674888 . T C 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.771;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.959;QD=19.94;ReadPosRankSum=1.670;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2286,258,0 chrXVI 674900 . T C 2209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=119;Dels=0.00;FS=3.680;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-1.354;QD=18.56;ReadPosRankSum=1.703;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2242,252,0 chrXVI 674984 . A G 3410.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=10.5723;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-1.462;QD=20.30;ReadPosRankSum=1.711;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:1,166:168:99:3410,387,0 chrXVI 675011 . C T 3097 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.11;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3130,339,0 chrXVI 675019 . A G 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=165;Dels=0.00;FS=3.314;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-0.308;QD=17.09;ReadPosRankSum=1.668;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:1,162:165:99:2853,321,0 chrXVI 675074 . C T 1735 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=16.21;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1768,192,0 chrXVI 675350 . G T 2909 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.08;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2942,315,0 chrXVI 675659 . T A 2342 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.7132;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=24.65;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2375,258,0 chrXVI 675869 . A C 1413 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.9086;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.90;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1446,162,0 chrXVI 675884 . G A 1342 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.65;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1375,153,0 chrXVI 675889 . A G 1382 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=21.26;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1415,165,0 chrXVI 676046 . C T 2468 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.50;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2501,273,0 chrXVI 676149 . C T 3925.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=25.00;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3925,426,0 chrXVI 676361 . A G 4789.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=228;Dels=0.00;FS=3.029;HaplotypeScore=9.0244;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.572;QD=21.00;ReadPosRankSum=1.686;SB=-2.772e+03 GT:AD:DP:GQ:PL 1/1:1,226:228:99:4789,569,0 chrXVI 677025 . C T 2898 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.2019;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=19.19;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2931,327,0 chrXVI 677141 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=123.3241;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=0.12;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,138:143:6:48,6,0 chrXVI 677161 . G A 2922 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=17.71;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:2955,321,0 chrXVI 677260 . T A 5380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=14.8935;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=0.728;QD=25.02;ReadPosRankSum=1.716;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:5380,582,0 chrXVI 677596 . T C 4274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=190;Dels=0.00;FS=9.917;HaplotypeScore=13.5430;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.045;QD=22.49;ReadPosRankSum=2.411;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:2,188:190:99:4274,486,0 chrXVI 677784 . C T 4063.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=20.62;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,193:197:99:4063,453,0 chrXVI 677786 . G A 4066.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.85;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4066,447,0 chrXVI 677796 . A G 3911.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=8.6294;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=18.62;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,207:210:99:3911,447,0 chrXVI 677836 . T C 4122.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=7.2100;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=-1.431;QD=17.92;ReadPosRankSum=1.687;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:4122,468,0 chrXVI 678266 . G C 3834.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=9.4137;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.66;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3834,447,0 chrXVI 678569 . T C 3523.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.4585;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.450;QD=22.73;ReadPosRankSum=1.710;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3523,414,0 chrXVI 679094 . T C 3271.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.36;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3271,369,0 chrXVI 679136 . G A 3539.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.8910;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.40;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3539,387,0 chrXVI 679292 . A C 4284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=193;Dels=0.00;FS=2.999;HaplotypeScore=10.3620;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.185;QD=22.20;ReadPosRankSum=2.411;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:2,191:193:99:4284,492,0 chrXVI 679562 . C T 3055 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3088,342,0 chrXVI 679897 . G A 4157.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=8.1677;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.35;SB=-2.278e+03 GT:AD:DP:GQ:PL 1/1:0,183:186:99:4157,447,0 chrXVI 680000 . A G 559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-8.343;DP=190;Dels=0.00;FS=18.559;HaplotypeScore=136.4201;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=1.811;QD=2.94;ReadPosRankSum=-5.744;SB=-3.007e+00 GT:AD:DP:GQ:PL 1/1:145,44:190:29:592,29,0 chrXVI 680007 . G A 294.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.642;DP=195;Dels=0.00;FS=11.540;HaplotypeScore=146.2391;MLEAC=1;MLEAF=0.500;MQ=53.52;MQ0=0;MQRankSum=-0.412;QD=1.51;ReadPosRankSum=5.473;SB=-1.835e+03 GT:AD:DP:GQ:PL 0/1:30,164:195:99:324,0,408 chrXVI 680040 . G A 3853.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=15.0810;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.56;SB=-2.394e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3853,417,0 chrXVI 680151 . A G 5696.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=253;Dels=0.00;FS=3.697;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.418;QD=22.51;ReadPosRankSum=1.718;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:1,252:253:99:5696,636,0 chrXVI 680207 . T C 5603.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=247;Dels=0.00;FS=2.920;HaplotypeScore=11.1244;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=1.446;QD=22.68;ReadPosRankSum=2.320;SB=-2.552e+03 GT:AD:DP:GQ:PL 1/1:2,245:247:99:5603,654,0 chrXVI 680253 . G T 5908.01 PASS AC=2;AF=1.00;AN=2;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=12.0913;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=24.11;SB=-2.805e+03 GT:AD:DP:GQ:PL 1/1:0,244:245:99:5908,642,0 chrXVI 680440 . A T 4496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=0.199;QD=19.05;ReadPosRankSum=1.717;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:1,235:236:99:4496,489,0 chrXVI 680451 . C T 3801.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=16.17;SB=-2.550e+03 GT:AD:DP:GQ:PL 1/1:0,234:235:99:3801,423,0 chrXVI 680463 . G A 3677.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=15.99;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,230:230:99:3677,402,0 chrXVI 680556 . A G 3863.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.727;DP=191;Dels=0.00;FS=5.912;HaplotypeScore=16.6011;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.433;QD=20.23;ReadPosRankSum=2.941;SB=-2.038e+03 GT:AD:DP:GQ:PL 1/1:3,185:191:99:3863,444,0 chrXVI 680822 . T C 1675 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=16.58;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1708,189,0 chrXVI 680837 . T C 1653 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=18.16;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1686,192,0 chrXVI 681023 . A T 788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.718;QD=19.22;ReadPosRankSum=1.648;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:90:821,90,0 chrXVI 681090 . A G 1026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=54;Dels=0.04;FS=11.635;HaplotypeScore=8.6986;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.071;QD=19.00;ReadPosRankSum=2.355;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:1059,117,0 chrXVI 681108 . G T 1201 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=17.93;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1234,135,0 chrXVI 681242 . A C 2683 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.17;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2716,309,0 chrXVI 681366 . A G 4186.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.63;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,183:185:99:4186,480,0 chrXVI 681443 . G T 4431.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.21;SB=-2.163e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4431,480,0 chrXVI 681479 . T C 4198.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.409;DP=201;Dels=0.00;FS=11.157;HaplotypeScore=29.8016;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.554;QD=20.89;ReadPosRankSum=3.811;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:6,194:201:99:4198,474,0 chrXVI 681679 . A G 5260.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=9.8962;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.48;SB=-2.644e+03 GT:AD:DP:GQ:PL 1/1:0,232:234:99:5260,597,0 chrXVI 681719 . A G 5160.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=246;Dels=0.00;FS=2.572;HaplotypeScore=13.5462;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.090;QD=20.98;ReadPosRankSum=2.955;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:3,243:246:99:5160,600,0 chrXVI 681810 . A G 5223.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=15.0082;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.67;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5223,603,0 chrXVI 682109 . C T 3030 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=21.19;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3063,327,0 chrXVI 682112 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.66;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2926,312,0 chrXVI 682218 . G T 2567 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.13;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2600,279,0 chrXVI 682272 . C T 2540 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.28;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2573,276,0 chrXVI 682348 . G T 2854 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.47;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2887,312,0 chrXVI 682423 . A G 3325.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=8.038;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.009;QD=23.92;ReadPosRankSum=2.361;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3325,375,0 chrXVI 682475 . A G 3496.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=4.627;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.445;QD=23.62;ReadPosRankSum=1.709;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3496,387,0 chrXVI 682597 . T C 3505.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=159;Dels=0.00;FS=3.294;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-1.140;QD=22.04;ReadPosRankSum=1.710;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3505,399,0 chrXVI 682729 . C G 2830 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2863,324,0 chrXVI 682840 . G A 2019 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.19;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2052,228,0 chrXVI 682857 . G A 2119 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.62;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2152,240,0 chrXVI 683164 . A G 3871.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=15.0356;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=21.39;SB=-2.125e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:3871,438,0 chrXVI 683346 . C A 3354.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.5595;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.21;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3354,363,0 chrXVI 683503 . C T 3510.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.94;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3510,381,0 chrXVI 683733 . A G 3299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.315;DP=159;Dels=0.00;FS=5.264;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.415;QD=20.75;ReadPosRankSum=3.404;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:4,154:159:99:3299,384,0 chrXVI 684147 . C T 3183 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=20.67;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3216,354,0 chrXVI 684164 . A G 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=4.180;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-1.395;QD=20.75;ReadPosRankSum=1.660;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3021,342,0 chrXVI 684375 . G A 2294 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=20.67;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2327,252,0 chrXVI 684479 . T C 1806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.149;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.428;QD=21.76;ReadPosRankSum=2.360;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:2,80:83:99:1839,213,0 chrXVI 684937 . A G 3437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.5199;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.187;QD=21.22;ReadPosRankSum=1.689;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,158:162:99:3437,408,0 chrXVI 685030 . A T 4392.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=18.8736;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.85;SB=-2.148e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4392,480,0 chrXVI 685093 . G C 3361.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=17.6856;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.62;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,161:163:99:3361,396,0 chrXVI 685465 . C T 2844 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2877,312,0 chrXVI 685589 . T A 1937 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.04;FS=0.000;HaplotypeScore=8.7254;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=18.45;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1970,210,0 chrXVI 685590 . T A 1922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.416;DP=104;Dels=0.04;FS=0.000;HaplotypeScore=8.7254;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=0.901;QD=18.48;ReadPosRankSum=1.524;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1955,210,0 chrXVI 685682 . C T 2543 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.45;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2576,276,0 chrXVI 685867 . T C 2034 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.83;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2067,237,0 chrXVI 685870 . A G 1854 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.66;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1887,213,0 chrXVI 685954 . G A 2669 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.70;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2702,291,0 chrXVI 686122 . G A 3012 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.48;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3045,330,0 chrXVI 686200 . C T 2867 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.24;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2900,321,0 chrXVI 686218 . C T 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=3.041;HaplotypeScore=5.7670;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=0.846;QD=19.41;ReadPosRankSum=2.165;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2711,294,0 chrXVI 686508 . G A 2763 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.83;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2796,297,0 chrXVI 686521 . G A 2459 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.20;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2492,273,0 chrXVI 687260 . G A 6010.01 PASS AC=2;AF=1.00;AN=2;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=17.0859;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=25.15;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,238:239:99:6010,654,0 chrXVI 687602 . G A 5305.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.56;SB=-2.812e+03 GT:AD:DP:GQ:PL 1/1:0,215:216:99:5305,570,0 chrXVI 687687 . C T 4557.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=12.9880;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.91;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:4557,487,0 chrXVI 687758 . A G 4230.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.8821;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=23.63;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4230,480,0 chrXVI 687807 . T G 3529.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.5153;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=21.52;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,160:164:99:3529,399,0 chrXVI 687811 . G A 3654.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.5306;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=22.70;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3654,393,0 chrXVI 687832 . A T 3059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=145;Dels=0.00;FS=2.528;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=0.618;QD=21.10;ReadPosRankSum=2.952;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:3,142:145:99:3092,342,0 chrXVI 687906 . G A 1425 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.67;MQ0=0;QD=16.38;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1458,159,0 chrXVI 687923 . C T 1130 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.93;MQ0=0;QD=14.49;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1163,126,0 chrXVI 687936 . T C 1115 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=14.67;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1148,129,0 chrXVI 687964 . C T 1377 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=17.43;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1410,159,0 chrXVI 688015 . A G 2018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-1.338;QD=22.93;ReadPosRankSum=1.614;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2051,225,0 chrXVI 688111 . C A 1465 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=22.20;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1498,168,0 chrXVI 688156 . G A 2110 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=22.93;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2143,240,0 chrXVI 688161 . G A 2092 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=22.02;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2125,237,0 chrXVI 688180 . C A 2290 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.67;MQ0=0;QD=22.45;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2323,258,0 chrXVI 688249 . A G 1960 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=22.27;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1993,222,0 chrXVI 688296 . C A 1512 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.27;MQ0=0;QD=19.64;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1545,177,0 chrXVI 688326 . A G 1611 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.88;MQ0=0;QD=20.39;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1644,198,0 chrXVI 688327 . A C 1646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=0;MQRankSum=-1.005;QD=20.32;ReadPosRankSum=1.647;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1679,201,0 chrXVI 688347 . C A 1689 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;QD=20.35;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1722,204,0 chrXVI 688361 . G A 1732 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.59;MQ0=0;QD=20.14;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1765,201,0 chrXVI 688416 . G C 2155 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.61;MQ0=0;QD=21.13;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2188,255,0 chrXVI 688424 . C A 2175 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.45;MQ0=0;QD=22.89;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2208,249,0 chrXVI 688440 . T A 1909 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;QD=21.69;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1942,219,0 chrXVI 688464 . G T 1511 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.93;MQ0=0;QD=19.88;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1544,180,0 chrXVI 688491 . G A 749 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=14.98;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:93:782,93,0 chrXVI 688498 . C T 696 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.91;MQ0=0;QD=13.38;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:87:729,87,0 chrXVI 688501 . T G 689 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=5.399;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;MQRankSum=0.666;QD=13.25;ReadPosRankSum=1.666;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:90:722,90,0 chrXVI 688516 . G A 642 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=12.35;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:84:675,84,0 chrXVI 688557 . C T 1106 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=14.18;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1139,132,0 chrXVI 688569 . T G 1209 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.95;MQ0=0;QD=13.14;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1242,147,0 chrXVI 688584 . C T 1491 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=31.59;MQ0=0;QD=13.68;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1524,174,0 chrXVI 688591 . G A 1479 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=31.48;MQ0=0;QD=12.97;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1512,177,0 chrXVI 688608 . G A 1625 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.75;MQ0=0;QD=13.43;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1658,189,0 chrXVI 688629 . C T 1322 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=27.89;MQ0=0;QD=10.84;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1355,153,0 chrXVI 688636 . T A 1199 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;MQRankSum=-1.250;QD=10.34;ReadPosRankSum=1.702;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,114:116:99:1232,138,0 chrXVI 688641 . G A 1090 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=9.32;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1123,126,0 chrXVI 688645 . G C 1001 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=8.86;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1034,123,0 chrXVI 688656 . T C 803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;MQRankSum=-1.418;QD=7.65;ReadPosRankSum=2.403;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:836,99,0 chrXVI 688659 . G C 750 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=7.35;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:93:783,93,0 chrXVI 688669 . A G 631 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=84;Dels=0.00;FS=26.366;HaplotypeScore=2.3036;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;MQRankSum=-0.241;QD=7.51;ReadPosRankSum=2.917;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:3,81:84:78:664,78,0 chrXVI 688670 . C T 665 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=8.21;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:78:698,78,0 chrXVI 688674 . T C 624 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;QD=7.52;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:78:657,78,0 chrXVI 688679 . T A 580 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;MQRankSum=-2.357;QD=7.25;ReadPosRankSum=2.388;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:69:613,69,0 chrXVI 688681 . C T 579 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.9188;MLEAC=2;MLEAF=1.00;MQ=33.13;MQ0=0;QD=6.73;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:69:612,69,0 chrXVI 688693 . T A 1035 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=37.02;MQ0=0;QD=10.35;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1068,123,0 chrXVI 688954 . A G 3648.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=3.153;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=1.374;QD=23.38;ReadPosRankSum=1.665;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3648,420,0 chrXVI 689032 . C A 3125 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3158,342,0 chrXVI 689525 . T A 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3051;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.228;QD=23.34;ReadPosRankSum=1.701;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2600,294,0 chrXVI 689831 . G C 3031 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.35;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:3064,342,0 chrXVI 690445 . A G 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=102;Dels=0.00;FS=3.052;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.326;QD=23.59;ReadPosRankSum=0.881;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2439,282,0 chrXVI 690799 . T C 2969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.1223;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.012;QD=21.06;ReadPosRankSum=1.658;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3002,342,0 chrXVI 690865 . G A 2778 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.77;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2811,306,0 chrXVI 691468 . G A 3285.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.47;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3285,363,0 chrXVI 691472 . G C 3161 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.66;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,149:153:99:3194,366,0 chrXVI 691618 . A G 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=3.940;HaplotypeScore=10.3494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.510;QD=23.15;ReadPosRankSum=1.700;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2556,294,0 chrXVI 691669 . A G 2609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.069;QD=22.49;ReadPosRankSum=1.672;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2642,306,0 chrXVI 691932 . C G 2867 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.69;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2900,324,0 chrXVI 692054 . G A 3973.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=1.437;QD=21.02;ReadPosRankSum=-0.332;SB=-2.300e+03 GT:AD:DP:GQ:PL 1/1:1,187:189:99:3973,432,0 chrXVI 692056 . A G 3818.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=189;Dels=0.00;FS=5.995;HaplotypeScore=4.2283;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-1.647;QD=20.20;ReadPosRankSum=2.899;SB=-2.254e+03 GT:AD:DP:GQ:PL 1/1:3,185:189:99:3818,438,0 chrXVI 692119 . A G 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.679;DP=162;Dels=0.00;FS=11.456;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.226;QD=19.40;ReadPosRankSum=2.944;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:3,157:162:99:3175,366,0 chrXVI 692167 . G A 3966.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.4902;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.63;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3966,423,0 chrXVI 692185 . T C 3985.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=174;Dels=0.00;FS=2.839;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.121;QD=22.90;ReadPosRankSum=1.484;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:2,171:174:99:3985,450,0 chrXVI 692478 . A G 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=127;Dels=0.00;FS=5.772;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=1.056;QD=21.18;ReadPosRankSum=2.865;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2723,309,0 chrXVI 692510 . C A 2730 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.1085;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.84;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2763,297,0 chrXVI 692547 . A G 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.437;QD=21.60;ReadPosRankSum=1.702;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2517,285,0 chrXVI 692656 . T C 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=4.472;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.424;QD=22.51;ReadPosRankSum=1.697;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,97:100:99:2284,270,0 chrXVI 693120 . A G 3054 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.7500;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=19.21;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3087,348,0 chrXVI 693141 . C T 3340.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.09;SB=-2.033e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3340,375,0 chrXVI 693567 . T G 5345.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=244;Dels=0.00;FS=3.723;HaplotypeScore=17.9613;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=1.310;QD=21.91;ReadPosRankSum=1.703;SB=-2.512e+03 GT:AD:DP:GQ:PL 1/1:1,237:244:99:5345,606,0 chrXVI 693600 . C T 5569.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.75;SB=-2.632e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5569,601,0 chrXVI 693603 . A G 5444.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=267;Dels=0.00;FS=2.750;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=0.466;QD=20.39;ReadPosRankSum=2.173;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:2,264:267:99:5444,621,0 chrXVI 694413 . C T 7843.01 PASS AC=2;AF=1.00;AN=2;DP=336;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.34;SB=-4.355e+03 GT:AD:DP:GQ:PL 1/1:0,336:336:99:7843,853,0 chrXVI 694434 . C A 7250.01 PASS AC=2;AF=1.00;AN=2;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=8.4718;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.32;SB=-4.189e+03 GT:AD:DP:GQ:PL 1/1:0,339:340:99:7250,796,0 chrXVI 694716 . T C 5767.01 PASS AC=2;AF=1.00;AN=2;DP=268;Dels=0.00;FS=0.000;HaplotypeScore=19.3604;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.52;SB=-3.076e+03 GT:AD:DP:GQ:PL 1/1:0,266:268:99:5767,666,0 chrXVI 694808 . C T 4829.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.11;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,208:209:99:4829,528,0 chrXVI 694965 . G T 2964 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.5271;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=21.02;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2997,330,0 chrXVI 694969 . G T 2842 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=8.9222;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=20.30;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2875,318,0 chrXVI 695201 . A C 2493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.487;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=-0.505;QD=19.63;ReadPosRankSum=0.041;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2526,294,0 chrXVI 695213 . A G 2420 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=19.36;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2453,285,0 chrXVI 695215 . G T 2368 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=19.10;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2401,261,0 chrXVI 695230 . C A 2403 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=17.67;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2436,267,0 chrXVI 695419 . C T 3069 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=22.40;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3102,336,0 chrXVI 695522 . G A 2706 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=19.75;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2739,294,0 chrXVI 695527 . T G 2454 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=18.59;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2487,288,0 chrXVI 695543 . G C 2452 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=19.01;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2485,273,0 chrXVI 695653 . C G 2030 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.6098;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=18.80;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2063,231,0 chrXVI 696046 . T C 6175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=279;Dels=0.00;FS=8.946;HaplotypeScore=14.4404;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.349;QD=22.13;ReadPosRankSum=3.367;SB=-3.198e+03 GT:AD:DP:GQ:PL 1/1:4,273:279:99:6175,714,0 chrXVI 696088 . G A 6644.01 PASS AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=15.7715;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.30;SB=-3.587e+03 GT:AD:DP:GQ:PL 1/1:0,296:298:99:6644,721,0 chrXVI 696232 . A G 5690.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=260;Dels=0.00;FS=2.953;HaplotypeScore=17.1959;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.505;QD=21.88;ReadPosRankSum=2.402;SB=-2.865e+03 GT:AD:DP:GQ:PL 1/1:2,258:260:99:5690,642,0 chrXVI 696313 . G A 5167.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=17.2530;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.18;SB=-2.695e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5167,567,0 chrXVI 696364 . A C 4714.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=11.9747;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.41;SB=-2.600e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:4714,528,0 chrXVI 696407 . C T 4233.01 PASS AC=2;AF=1.00;AN=2;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=15.4873;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.86;SB=-2.491e+03 GT:AD:DP:GQ:PL 1/1:0,236:237:99:4233,459,0 chrXVI 696449 . C T 4083.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.92;SB=-2.362e+03 GT:AD:DP:GQ:PL 1/1:0,204:205:99:4083,444,0 chrXVI 696841 . A G 5104.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=12.0754;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.63;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,214:216:99:5104,576,0 chrXVI 697060 . C T 3691.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.97;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3691,393,0 chrXVI 697067 . T C 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-0.066;QD=21.21;ReadPosRankSum=1.688;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3373,378,0 chrXVI 697315 . G A 2583 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.2467;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.66;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2616,291,0 chrXVI 697444 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.55;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3094,336,0 chrXVI 697585 . C T 3976.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.73;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3976,423,0 chrXVI 697596 . T C 3911.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.10;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3911,435,0 chrXVI 697775 . C T 4405.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.7075;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.06;SB=-2.351e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4405,480,0 chrXVI 697864 . A G 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=124;Dels=0.00;FS=3.035;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.387;QD=20.23;ReadPosRankSum=2.410;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2541,294,0 chrXVI 697918 . A G 3078 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3111,369,0 chrXVI 697974 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=170;Dels=0.00;FS=2.794;HaplotypeScore=19.0137;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.022;QD=20.04;ReadPosRankSum=2.420;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:2,166:170:99:3406,384,0 chrXVI 698565 . A G 557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=6.931;HaplotypeScore=6.0332;MLEAC=2;MLEAF=1.00;MQ=43.68;MQ0=0;MQRankSum=-0.702;QD=7.43;ReadPosRankSum=1.685;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:69:590,69,0 chrXVI 698575 . T C 585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;MQRankSum=-0.796;QD=7.91;ReadPosRankSum=1.685;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:72:618,72,0 chrXVI 698605 . T C 1083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.8732;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;MQRankSum=-0.352;QD=12.03;ReadPosRankSum=2.921;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:3,86:90:99:1116,129,0 chrXVI 698632 . T C 1809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=-0.928;QD=16.15;ReadPosRankSum=1.670;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1842,213,0 chrXVI 698725 . A G 2421 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=22.63;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2454,276,0 chrXVI 698946 . T C 3609.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.01;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3609,423,0 chrXVI 698959 . T C 3522.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=168;Dels=0.00;FS=2.826;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=1.067;QD=20.96;ReadPosRankSum=2.361;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:2,165:168:99:3522,396,0 chrXVI 698973 . T C 3618.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=1.151;QD=20.21;ReadPosRankSum=1.713;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3618,420,0 chrXVI 699102 . G A 5220.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=9.8862;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.51;SB=-2.872e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:5220,564,0 chrXVI 699146 . T G 4091.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=17.9613;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.317;QD=20.98;ReadPosRankSum=1.714;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:1,190:195:99:4091,459,0 chrXVI 699198 . T C 4788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=12.7274;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=1.189;QD=23.47;ReadPosRankSum=1.715;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4788,540,0 chrXVI 699223 . T C 4535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=198;Dels=0.00;FS=6.500;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=0.257;QD=22.90;ReadPosRankSum=2.374;SB=-2.374e+03 GT:AD:DP:GQ:PL 1/1:2,194:198:99:4535,504,0 chrXVI 699945 . T C 3191 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.82;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3224,378,0 chrXVI 700042 . A G 4530.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.141;DP=209;Dels=0.00;FS=7.448;HaplotypeScore=12.0934;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=0.325;QD=21.67;ReadPosRankSum=4.058;SB=-1.748e+03 GT:AD:DP:GQ:PL 1/1:6,203:209:99:4530,519,0 chrXVI 700308 . G C 1689 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=15.93;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,103:106:99:1722,207,0 chrXVI 700309 . T G 1688 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=5.893;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=0.600;QD=16.71;ReadPosRankSum=1.698;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1721,201,0 chrXVI 700311 . G A 1800 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=17.48;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1833,201,0 chrXVI 700480 . C T 2463 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=23.24;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2496,273,0 chrXVI 700509 . A G 2421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=5.177;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;MQRankSum=-1.299;QD=21.62;ReadPosRankSum=1.701;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2454,294,0 chrXVI 702124 . A G 2739 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=23.82;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2772,309,0 chrXVI 702403 . C T 3884.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=23.26;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3884,423,0 chrXVI 702425 . C T 3104 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.2728;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.40;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3137,354,0 chrXVI 702489 . G A 2787 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=18.46;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2820,303,0 chrXVI 702492 . G A 2705 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=18.40;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2738,300,0 chrXVI 702662 . G C 3200 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.0781;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.25;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,155:158:99:3233,375,0 chrXVI 702822 . G T 2890 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2923,321,0 chrXVI 703282 . C T 2956 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9835;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.03;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2989,321,0 chrXVI 703359 . T C 3341.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=156;Dels=0.00;FS=3.034;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.769;QD=21.42;ReadPosRankSum=2.418;SB=-1.939e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3341,372,0 chrXVI 703434 . T C 2970 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=13.4112;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.00;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3003,339,0 chrXVI 703815 . C T 4213.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.4991;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.53;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4213,465,0 chrXVI 704140 . C T 4121.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=7.7114;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.24;SB=-2.578e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:4121,441,0 chrXVI 704149 . T C 3547.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.38;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3547,405,0 chrXVI 704396 . G C 5437.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.286;DP=244;Dels=0.00;FS=3.176;HaplotypeScore=9.8110;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=1.171;QD=22.28;ReadPosRankSum=0.855;SB=-3.005e+03 GT:AD:DP:GQ:PL 1/1:1,240:244:99:5437,582,0 chrXVI 705108 . C A 3808.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.89;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3808,414,0 chrXVI 705129 . C T 3623.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.3009;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.53;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3623,387,0 chrXVI 705306 . T C 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=143;Dels=0.00;FS=3.198;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.195;QD=22.93;ReadPosRankSum=1.683;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3279,375,0 chrXVI 705570 . G C 3917.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,166:168:99:3917,432,0 chrXVI 705738 . A C 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=139;Dels=0.00;FS=3.138;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.502;QD=22.74;ReadPosRankSum=1.707;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3194,357,0 chrXVI 705875 . A G 5395.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.25;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,231:232:99:5395,597,0 chrXVI 706032 . C T 7161.01 PASS AC=2;AF=1.00;AN=2;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=20.4546;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.17;SB=-3.660e+03 GT:AD:DP:GQ:PL 1/1:0,322:323:99:7161,781,0 chrXVI 706170 . A G 8149.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.251;DP=375;Dels=0.00;FS=9.018;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=-0.513;QD=21.73;ReadPosRankSum=3.429;SB=-4.640e+03 GT:AD:DP:GQ:PL 1/1:4,367:375:99:8149,906,0 chrXVI 706182 . A G 7568.01 PASS AC=2;AF=1.00;AN=2;DP=348;Dels=0.00;FS=0.000;HaplotypeScore=13.1014;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=21.75;SB=-4.356e+03 GT:AD:DP:GQ:PL 1/1:0,345:348:99:7568,852,0 chrXVI 706320 . C T 5415.01 PASS AC=2;AF=1.00;AN=2;DP=308;Dels=0.00;FS=0.000;HaplotypeScore=12.9032;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=17.58;SB=-3.261e+03 GT:AD:DP:GQ:PL 1/1:0,305:308:99:5415,583,0 chrXVI 706329 . C T 4595.01 PASS AC=2;AF=1.00;AN=2;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=4.1612;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=15.68;SB=-3.109e+03 GT:AD:DP:GQ:PL 1/1:0,293:293:99:4595,519,0 chrXVI 706366 . T C 3834.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=284;Dels=0.00;FS=13.285;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;MQRankSum=-0.411;QD=13.50;ReadPosRankSum=2.932;SB=-2.567e+03 GT:AD:DP:GQ:PL 1/1:3,278:284:99:3834,438,0 chrXVI 706374 . G T 3843.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=13.87;SB=-2.799e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:3843,417,0 chrXVI 706407 . G A 4009.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=16.04;SB=-2.528e+03 GT:AD:DP:GQ:PL 1/1:0,249:250:99:4009,441,0 chrXVI 706474 . C T 5469.01 PASS AC=2;AF=1.00;AN=2;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.68;SB=-2.558e+03 GT:AD:DP:GQ:PL 1/1:0,231:231:99:5469,586,0 chrXVI 707052 . A G 3350.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.19;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3350,393,0 chrXVI 707295 . T C 3503.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=158;Dels=0.00;FS=6.982;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.132;QD=22.17;ReadPosRankSum=2.341;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3503,390,0 chrXVI 707392 . A C 3353.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.5557;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=19.05;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3353,384,0 chrXVI 707402 . G C 3230.05 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=18.04;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3264,363,0 chrXVI 707406 . T C 3112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;MQRankSum=-0.772;QD=16.91;ReadPosRankSum=1.713;SB=-1.978e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:3145,351,0 chrXVI 707414 . T G 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;MQRankSum=0.332;QD=17.62;ReadPosRankSum=1.677;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:1,187:188:99:3313,372,0 chrXVI 707478 . T C 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.3085;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=0.972;QD=19.18;ReadPosRankSum=1.711;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3198,357,0 chrXVI 707520 . C T 3886.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.99;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3886,432,0 chrXVI 707652 . C T 3939.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=22.01;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:3939,426,0 chrXVI 707772 . C A 2865 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.04;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2898,309,0 chrXVI 707796 . T A 3212.98 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.63;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3246,360,0 chrXVI 708078 . G A 4984.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.7449;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.45;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4984,552,0 chrXVI 708162 . G T 3663.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=16.1225;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3663,399,0 chrXVI 708208 . C T 3223.06 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.5008;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.36;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3256,357,0 chrXVI 708362 . C T 2388 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.41;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2421,261,0 chrXVI 708478 . A C 2099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=105;Dels=0.00;FS=3.049;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;MQRankSum=0.223;QD=19.99;ReadPosRankSum=2.379;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2132,249,0 chrXVI 708483 . A T 1994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.141;DP=95;Dels=0.00;FS=14.116;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=-0.751;QD=20.99;ReadPosRankSum=3.363;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:4,91:95:99:2027,219,0 chrXVI 708490 . A C 1926 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=18.52;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:1959,225,0 chrXVI 708641 . C T 3066 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=20.04;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3099,348,0 chrXVI 708647 . A G 2753 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=18.23;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2786,321,0 chrXVI 708653 . A G 2712 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=17.61;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2745,321,0 chrXVI 708674 . G C 2289 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0061;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=16.01;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2322,270,0 chrXVI 709130 . T G 2886 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.22;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2919,336,0 chrXVI 709506 . A C 3899.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.7124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,170:174:99:3899,444,0 chrXVI 709715 . T C 5378.01 PASS AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=14.4059;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.86;SB=-2.801e+03 GT:AD:DP:GQ:PL 1/1:0,244:246:99:5378,627,0 chrXVI 709831 . G C 3809.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.16;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,177:180:99:3809,432,0 chrXVI 710154 . G A 2830 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.36;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2863,324,0 chrXVI 710484 . T C 3660.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=12.8548;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=18.96;SB=-2.365e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3660,426,0 chrXVI 711113 . A G 2959 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.76;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2992,336,0 chrXVI 711270 . C T 1956 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.3285;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.18;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1989,216,0 chrXVI 711619 . C G 5031.01 PASS AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=12.1145;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=15.53;SB=-2.696e+03 GT:AD:DP:GQ:PL 1/1:0,239:324:99:5031,567,0 chrXVI 711628 . A C 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.374;DP=314;Dels=0.00;FS=11.358;HaplotypeScore=12.1547;MLEAC=1;MLEAF=0.500;MQ=46.25;MQ0=0;MQRankSum=-8.110;QD=0.10;ReadPosRankSum=-6.256;SB=-5.400e+02 GT:AD:DP:GQ:PL 0/1:208,106:314:60:60,0,4104 chrXVI 711643 . A G 696.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.872;DP=315;Dels=0.00;FS=6.657;HaplotypeScore=7.1916;MLEAC=1;MLEAF=0.500;MQ=45.25;MQ0=0;MQRankSum=-6.048;QD=2.21;ReadPosRankSum=4.109;SB=-1.130e+03 GT:AD:DP:GQ:PL 0/1:168,147:315:99:726,0,2957 chrXVI 711646 . C A 836.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.496;DP=316;Dels=0.00;FS=6.690;HaplotypeScore=11.7595;MLEAC=1;MLEAF=0.500;MQ=45.21;MQ0=0;MQRankSum=-4.482;QD=2.65;ReadPosRankSum=5.800;SB=-1.328e+03 GT:AD:DP:GQ:PL 0/1:159,156:316:99:866,0,2736 chrXVI 712528 . A G 4661.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=199;Dels=0.00;FS=3.329;HaplotypeScore=10.7076;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.312;QD=23.42;ReadPosRankSum=1.715;SB=-2.333e+03 GT:AD:DP:GQ:PL 1/1:1,197:199:99:4661,516,0 chrXVI 713361 . G C 4186.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=16.4668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-2.268e+03 GT:AD:DP:GQ:PL 1/1:0,193:195:99:4186,465,0 chrXVI 713451 . A G 4464.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=12.9108;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4464,498,0 chrXVI 713718 . G A 4651.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.2777;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-2.607e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4651,501,0 chrXVI 714048 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=152;Dels=0.00;FS=3.430;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-1.390;QD=21.53;ReadPosRankSum=1.687;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3272,378,0 chrXVI 714075 . T C 3139 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.95;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3172,351,0 chrXVI 714279 . A T 2867 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=19.50;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2900,321,0 chrXVI 714300 . A T 3218.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=155;Dels=0.00;FS=8.288;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.103;QD=20.76;ReadPosRankSum=2.386;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:3251,351,0 chrXVI 714342 . G A 3737.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=14.4750;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.24;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,165:168:99:3737,414,0 chrXVI 714603 . T C 3158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=144;Dels=0.00;FS=8.130;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.476;QD=21.93;ReadPosRankSum=2.398;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:2,140:144:99:3191,360,0 chrXVI 714698 . G A 3202 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.79;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3235,351,0 chrXVI 714703 . G C 2898 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=18.58;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2931,336,0 chrXVI 714728 . A G 2425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=147;Dels=0.00;FS=7.794;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.862;QD=16.50;ReadPosRankSum=2.415;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:2,142:147:99:2458,288,0 chrXVI 714942 . G A 4114.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.5430;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=23.11;SB=-2.236e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:4114,438,0 chrXVI 715017 . T A 3607.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=149;Dels=0.00;FS=2.975;HaplotypeScore=11.6634;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.141;QD=24.21;ReadPosRankSum=2.350;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3607,393,0 chrXVI 715629 . A G 4363.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=191;Dels=0.00;FS=4.060;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.589;QD=22.84;ReadPosRankSum=1.714;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:1,190:191:99:4363,486,0 chrXVI 715729 . G A 3667.01 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=21.83;SB=-2.100e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3667,393,0 chrXVI 715730 . G A 3671.01 SnpCluster AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=21.85;SB=-2.095e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3671,393,0 chrXVI 715739 . A G 3497.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=-1.550;QD=20.10;ReadPosRankSum=1.712;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:1,170:174:99:3497,390,0 chrXVI 715781 . G A 3813.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.1421;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.28;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3813,414,0 chrXVI 715923 . G A 3005 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.62;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3038,336,0 chrXVI 716432 . T C 2573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.3174;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.57;ReadPosRankSum=1.702;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2606,291,0 chrXVI 716474 . T A 3143 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3176,357,0 chrXVI 716627 . A G 3370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=156;Dels=0.00;FS=6.939;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.007;QD=21.60;ReadPosRankSum=2.402;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:2,153:156:99:3370,387,0 chrXVI 716666 . T C 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.136;QD=22.04;ReadPosRankSum=1.709;SB=-1.818e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3372,381,0 chrXVI 716753 . C T 3402.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=6.5996;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.25;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3402,387,0 chrXVI 716821 . T A 3559.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.220;QD=20.69;ReadPosRankSum=1.712;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3559,381,0 chrXVI 716879 . A G 4038.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=199;Dels=0.00;FS=12.758;HaplotypeScore=18.5752;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.914;QD=20.29;ReadPosRankSum=2.904;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:3,195:199:99:4038,462,0 chrXVI 716942 . C T 3580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-1.732;QD=21.44;ReadPosRankSum=-0.220;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3580,393,0 chrXVI 717019 . G A 3480.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.4006;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.61;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3480,378,0 chrXVI 717101 . G A 3861.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.58;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3861,429,0 chrXVI 717249 . C T 2512 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.05;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2545,276,0 chrXVI 717476 . A G 3507.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,150:154:99:3507,396,0 chrXVI 717952 . G T 3617.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3617,390,0 chrXVI 718160 . C T 2769 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2802,306,0 chrXVI 718224 . T C 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.477;QD=22.96;ReadPosRankSum=1.657;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:3247,366,0 chrXVI 718261 . G C 3393.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.73;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3393,375,0 chrXVI 718418 . T C 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=167;Dels=0.00;FS=6.421;HaplotypeScore=13.5558;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=1.302;QD=23.12;ReadPosRankSum=2.405;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:2,165:167:99:3861,453,0 chrXVI 718588 . A G 2975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=-0.678;QD=21.56;ReadPosRankSum=1.707;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3008,333,0 chrXVI 718600 . A C 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;MQRankSum=-0.044;QD=20.61;ReadPosRankSum=1.703;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2486,279,0 chrXVI 718602 . C T 2416 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=93.0995;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=20.83;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2449,273,0 chrXVI 718665 . T G 1777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=5.202;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=-1.569;QD=16.76;ReadPosRankSum=1.699;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1810,201,0 chrXVI 718667 . G A 1842 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=17.21;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1875,201,0 chrXVI 719281 . C T 1850 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=18.69;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1883,210,0 chrXVI 719293 . C T 1945 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.0454;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=17.84;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1978,219,0 chrXVI 719431 . C T 36.97 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=0.31;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:9:69,9,0 chrXVI 719432 . T A 112.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.746;DP=117;Dels=0.00;FS=5.252;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;MQRankSum=0.026;QD=0.96;ReadPosRankSum=2.816;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:18:145,18,0 chrXVI 719631 . T G 7922.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.436;DP=366;Dels=0.00;FS=0.000;HaplotypeScore=5.1571;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.868;QD=21.64;ReadPosRankSum=2.349;SB=-2.109e+03 GT:AD:DP:GQ:PL 1/1:2,364:366:99:7922,873,0 chrXVI 719633 . A G 7183.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=367;Dels=0.00;FS=12.824;HaplotypeScore=7.6077;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=0.921;QD=19.57;ReadPosRankSum=2.369;SB=-2.168e+03 GT:AD:DP:GQ:PL 1/1:2,364:367:99:7183,845,0 chrXVI 719789 . T G 11424.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=524;Dels=0.00;FS=6.527;HaplotypeScore=16.7172;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.059;QD=21.80;ReadPosRankSum=2.431;SB=-6.382e+03 GT:AD:DP:GQ:PL 1/1:2,520:524:99:11424,1281,0 chrXVI 719898 . C T 8501.01 filter AC=2;AF=1.00;AN=2;DP=398;Dels=0.00;FS=0.000;HaplotypeScore=25.1275;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.36;SB=-3.885e+03 GT:AD:DP:GQ:PL 1/1:0,396:398:99:8501,925,0 chrXVI 719918 . T C 7426.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=382;Dels=0.00;FS=4.591;HaplotypeScore=14.3879;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-0.620;QD=19.44;ReadPosRankSum=1.714;SB=-3.381e+03 GT:AD:DP:GQ:PL 1/1:1,376:382:99:7426,866,0 chrXVI 720561 . C A 3485.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.37;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3485,375,0 chrXVI 720720 . C T 4624.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.08;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4624,513,0 chrXVI 720834 . A T 2370 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.36;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2403,261,0 chrXVI 721050 . T C 4479.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.175;QD=24.21;ReadPosRankSum=2.410;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:2,183:185:99:4479,519,0 chrXVI 721093 . T C 4144.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.173;QD=23.15;ReadPosRankSum=2.367;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:2,176:179:99:4144,471,0 chrXVI 721144 . C A 2973 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3006,342,0 chrXVI 722078 . C G 2165 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.23;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2198,252,0 chrXVI 722089 . A G 2118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-1.369;QD=19.79;ReadPosRankSum=1.666;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,104:107:99:2151,246,0 chrXVI 722172 . G C 2040 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2073,234,0 chrXVI 722483 . A G 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.430;QD=23.23;ReadPosRankSum=-0.872;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,148:150:99:3485,399,0 chrXVI 722572 . T A 2915 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.5070;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2948,321,0 chrXVI 722849 . C G 3272.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3272,375,0 chrXVI 723074 . C T 2549 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.02;FS=0.000;HaplotypeScore=9.4188;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.91;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2582,282,0 chrXVI 723284 . C T 3533.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.2468;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.94;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3533,384,0 chrXVI 723296 . T C 3159 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.64;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3192,360,0 chrXVI 723524 . A G 5516.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.275;DP=238;Dels=0.00;FS=14.819;HaplotypeScore=15.8516;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.434;QD=23.18;ReadPosRankSum=3.424;SB=-2.405e+03 GT:AD:DP:GQ:PL 1/1:4,231:238:99:5516,621,0 chrXVI 723602 . A G 4401.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.47;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4401,516,0 chrXVI 723709 . C T 4223.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.12;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4223,456,0 chrXVI 723723 . A T 4469.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.18;SB=-2.065e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4469,477,0 chrXVI 724121 . A G 3811.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.5098;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.378;QD=21.78;ReadPosRankSum=1.692;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:3811,420,0 chrXVI 724232 . G A 2982 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.25;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3015,336,0 chrXVI 724286 . C T 3395.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.79;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3395,375,0 chrXVI 724967 . G T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.97;SB=-1.776e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3249,354,0 chrXVI 725136 . G A 2800 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.59;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2833,306,0 chrXVI 725138 . C T 2780 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.75;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2813,306,0 chrXVI 725262 . G A 3762.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=23.22;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3762,411,0 chrXVI 725275 . A G 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=-1.336;QD=21.20;ReadPosRankSum=1.690;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3519,399,0 chrXVI 725291 . T A 3221.92 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=20.92;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3255,354,0 chrXVI 725308 . G A 3064 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=20.84;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3097,339,0 chrXVI 725435 . A G 3510.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=172;Dels=0.00;FS=6.356;HaplotypeScore=4.7687;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=1.307;QD=20.41;ReadPosRankSum=2.335;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:2,170:172:99:3510,390,0 chrXVI 725441 . C T 3653.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.74;SB=-2.158e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3653,390,0 chrXVI 725567 . C A 3439.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.9066;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.72;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,162:166:99:3439,372,0 chrXVI 725570 . T A 3426.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.6953;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.76;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3426,375,0 chrXVI 725777 . A G 2775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=-1.570;QD=21.68;ReadPosRankSum=1.705;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2808,318,0 chrXVI 726358 . G A 3463.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.453;DP=151;Dels=0.00;FS=3.159;HaplotypeScore=8.1983;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.616;QD=22.93;ReadPosRankSum=-0.756;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:3463,375,0 chrXVI 726386 . C T 3348.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.2219;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.32;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3348,366,0 chrXVI 726480 . A G 3563.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=170;Dels=0.00;FS=7.744;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-0.845;QD=20.96;ReadPosRankSum=2.406;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:3563,402,0 chrXVI 726485 . T C 3373.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=2.876;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-0.585;QD=20.32;ReadPosRankSum=2.361;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3373,387,0 chrXVI 726638 . C T 3117 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.6996;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.95;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3150,354,0 chrXVI 727099 . T G 3520.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=3.259;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.010;QD=24.44;ReadPosRankSum=1.708;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3520,390,0 chrXVI 727505 . T C 3187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=143;Dels=0.00;FS=2.955;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.671;QD=22.29;ReadPosRankSum=2.415;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3220,369,0 chrXVI 727667 . C T 3747.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.72;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3747,408,0 chrXVI 728255 . T C 2856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=125;Dels=0.00;FS=2.883;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.426;QD=22.85;ReadPosRankSum=2.410;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2889,333,0 chrXVI 728329 . A G 2635 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=21.08;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2668,300,0 chrXVI 728333 . A G 2595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=3.795;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-1.023;QD=20.43;ReadPosRankSum=1.650;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2628,297,0 chrXVI 728378 . C A 2161 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=18.47;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2194,237,0 chrXVI 728630 . C G 1215 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=270.5218;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=0;QD=17.36;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1248,144,0 chrXVI 728995 . C T 3999.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=14.2195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3999,438,0 chrXVI 729067 . T C 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.030;QD=23.03;ReadPosRankSum=1.709;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3409,393,0 chrXVI 729102 . T C 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.862;QD=23.31;ReadPosRankSum=2.392;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2994,342,0 chrXVI 729159 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.1677;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.99;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3406,381,0 chrXVI 729469 . A T 3031 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3064,336,0 chrXVI 729729 . C T 3894.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-2.070e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3894,432,0 chrXVI 730213 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.91;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2735,294,0 chrXVI 730292 . T C 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=114;Dels=0.00;FS=2.915;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=1.090;QD=22.05;ReadPosRankSum=2.407;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2547,291,0 chrXVI 730311 . T C 2711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=0.945;QD=20.54;ReadPosRankSum=1.601;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2744,309,0 chrXVI 730436 . T A 2685 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2718,294,0 chrXVI 730534 . G A 3135 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.57;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3168,354,0 chrXVI 730934 . G A 3319.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.01;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3319,366,0 chrXVI 730935 . T G 3134 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.96;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3167,357,0 chrXVI 731036 . T C 2295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.340;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.4941;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.719;QD=21.65;ReadPosRankSum=0.719;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2328,245,0 chrXVI 731859 . T C 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.117;QD=21.95;ReadPosRankSum=1.703;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2667,300,0 chrXVI 732115 . T G 3055 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.98;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3088,363,0 chrXVI 732154 . C T 2995 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.19;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3028,327,0 chrXVI 732170 . T C 2935 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=20.24;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2968,348,0 chrXVI 732243 . A T 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.1867;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.640;QD=21.45;ReadPosRankSum=1.709;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3303,366,0 chrXVI 732897 . G A 4675.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.6982;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.58;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4675,510,0 chrXVI 733228 . A C 2645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.6765;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.646;QD=21.86;ReadPosRankSum=1.675;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2678,297,0 chrXVI 733366 . T C 1404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.150;DP=74;Dels=0.00;FS=2.913;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.083;QD=18.97;ReadPosRankSum=2.250;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1437,162,0 chrXVI 733425 . G A 2243 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.86;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2276,246,0 chrXVI 733512 . A G 1931 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1964,222,0 chrXVI 733636 . T C 3053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-0.749;QD=21.50;ReadPosRankSum=1.708;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,140:142:99:3086,345,0 chrXVI 733707 . A G 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=174;Dels=0.00;FS=4.226;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.242;QD=21.75;ReadPosRankSum=1.692;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,171:174:99:3785,426,0 chrXVI 733816 . T G 4583.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.639;DP=254;Dels=0.00;FS=4.785;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.015;QD=18.04;ReadPosRankSum=3.824;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:5,248:254:99:4583,537,0 chrXVI 733817 . T C 4832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.997;DP=261;Dels=0.00;FS=4.645;HaplotypeScore=4.2988;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-0.397;QD=18.51;ReadPosRankSum=4.123;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:6,255:261:99:4832,540,0 chrXVI 734148 . T A 5114.01 PASS AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=22.3417;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.04;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,232:232:99:5114,561,0 chrXVI 734298 . C T 3329.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=14.3263;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.02;SB=-2.146e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3329,369,0 chrXVI 734520 . C G 4168.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,187:192:99:4168,471,0 chrXVI 734705 . T A 3576.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.2947;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=23.07;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3576,390,0 chrXVI 735447 . G T 4262.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.4295;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.021;QD=25.07;ReadPosRankSum=-0.330;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4262,465,0 chrXVI 735801 . T C 4824.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=221;Dels=0.00;FS=7.268;HaplotypeScore=15.9638;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=1.150;QD=21.83;ReadPosRankSum=2.405;SB=-2.381e+03 GT:AD:DP:GQ:PL 1/1:2,219:221:99:4824,552,0 chrXVI 735864 . G T 3929.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=21.47;SB=-2.424e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3929,426,0 chrXVI 735865 . G T 3926.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=21.45;SB=-2.400e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3926,426,0 chrXVI 735901 . C T 3597.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.83;SB=-2.223e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3597,390,0 chrXVI 735906 . G C 3293.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=18.19;SB=-2.246e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3293,369,0 chrXVI 736014 . G A 4298.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.93;SB=-2.501e+03 GT:AD:DP:GQ:PL 1/1:0,193:196:99:4298,471,0 chrXVI 736031 . C T 4462.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.20;SB=-2.630e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4462,486,0 chrXVI 736257 . A G 4147.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.74;SB=-2.285e+03 GT:AD:DP:GQ:PL 1/1:0,197:200:99:4147,483,0 chrXVI 736356 . A T 2848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=138;Dels=0.00;FS=5.401;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.522;QD=20.64;ReadPosRankSum=2.905;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:2881,315,0 chrXVI 736410 . T C 2439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=128;Dels=0.00;FS=2.594;HaplotypeScore=10.1377;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=1.758;QD=19.05;ReadPosRankSum=1.969;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2472,282,0 chrXVI 736455 . A G 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.887;QD=20.93;ReadPosRankSum=2.415;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2963,336,0 chrXVI 736469 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.72;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3269,363,0 chrXVI 736492 . A T 3168 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.71;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3201,357,0 chrXVI 736687 . A G 3047 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=24.98;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:3080,339,0 chrXVI 736718 . C G 2921 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.37;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2954,336,0 chrXVI 736854 . G C 3295.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=15.1857;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.42;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,144:147:99:3295,366,0 chrXVI 737218 . C T 4092.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-2.171e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4092,447,0 chrXVI 737318 . T C 3571.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=164;Dels=0.00;FS=3.556;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.914;QD=21.77;ReadPosRankSum=1.668;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:3571,399,0 chrXVI 737455 . C A 3058 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3091,339,0 chrXVI 738241 . A G 3171 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.84;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3204,363,0 chrXVI 738527 . T C 3727.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=7.089;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.897;QD=22.05;ReadPosRankSum=2.391;SB=-1.922e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3727,417,0 chrXVI 738601 . C T 3502.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.89;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3502,381,0 chrXVI 738727 . A G 3154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.789;DP=150;Dels=0.00;FS=5.916;HaplotypeScore=9.0384;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.531;QD=21.03;ReadPosRankSum=2.925;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:3,145:150:99:3187,357,0 chrXVI 738757 . C T 2644 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.4000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.98;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2677,294,0 chrXVI 739009 . A G 3051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=142;Dels=0.00;FS=2.917;HaplotypeScore=8.4859;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.199;QD=21.49;ReadPosRankSum=2.415;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3084,348,0 chrXVI 739339 . C T 4014.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-2.253e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4014,447,0 chrXVI 739738 . G A 4305.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.92;SB=-2.186e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:4305,465,0 chrXVI 739829 . C T 3772.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.65;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3772,408,0 chrXVI 739882 . A G 3876.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.93;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3876,435,0 chrXVI 740090 . C T 3846.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=12.8976;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.49;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3846,435,0 chrXVI 740140 . G A 3359.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.85;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3359,363,0 chrXVI 740246 . A C 3545.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.48;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3545,417,0 chrXVI 740520 . T G 3513.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.6413;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.969;QD=20.79;ReadPosRankSum=1.711;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:1,167:169:99:3513,390,0 chrXVI 740531 . A G 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=4.225;HaplotypeScore=11.1489;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-1.542;QD=19.16;ReadPosRankSum=1.711;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:3194,375,0 chrXVI 740798 . T C 3882.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=16.5085;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.31;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3882,444,0 chrXVI 740879 . A G 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=12.0354;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.771;QD=21.18;ReadPosRankSum=1.707;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2935,339,0 chrXVI 741098 . G A 3158 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.05;SB=-1.810e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3191,345,0 chrXVI 741341 . T C 3020 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=23.05;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3053,345,0 chrXVI 741347 . T G 2840 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.19;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2873,330,0 chrXVI 741467 . A G 2164 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=17.17;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2197,249,0 chrXVI 741636 . A G 3095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=137;Dels=0.00;FS=10.591;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.842;QD=22.59;ReadPosRankSum=2.873;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:3,131:137:99:3128,357,0 chrXVI 742069 . T A 2294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=113;Dels=0.03;FS=8.019;HaplotypeScore=8.9031;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-1.331;QD=20.30;ReadPosRankSum=2.405;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2327,255,0 chrXVI 742072 . A C 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.184;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.4422;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=0.056;QD=19.68;ReadPosRankSum=3.424;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:5,107:113:99:2257,255,0 chrXVI 742152 . A C 3150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.201;DP=149;Dels=0.00;FS=6.169;HaplotypeScore=8.7356;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.307;QD=21.14;ReadPosRankSum=2.416;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:2,146:149:99:3183,354,0 chrXVI 742176 . A G 2871 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=20.36;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2904,327,0 chrXVI 742200 . T C 2597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-0.336;QD=19.24;ReadPosRankSum=1.706;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2630,297,0 chrXVI 743518 . C T 3972.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=12.5397;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.769;QD=22.96;ReadPosRankSum=-1.035;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:1,168:173:99:3972,438,0 chrXVI 743659 . G A 4754.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.77;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:4754,531,0 chrXVI 743731 . A T 3729.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.3136;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=1.253;QD=24.37;ReadPosRankSum=1.709;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3729,405,0 chrXVI 743816 . G A 3717.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.4452;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=23.83;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3717,402,0 chrXVI 743855 . T C 3159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=162;Dels=0.00;FS=11.939;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.044;QD=19.50;ReadPosRankSum=2.394;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:3192,349,0 chrXVI 743861 . C G 3335.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.84;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,154:160:99:3335,375,0 chrXVI 743936 . G C 2267 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.42;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2300,261,0 chrXVI 743956 . G T 2041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=102;Dels=0.00;FS=3.279;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=0.727;QD=20.01;ReadPosRankSum=1.455;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2074,225,0 chrXVI 743973 . G A 1944 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.9051;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.06;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1977,219,0 chrXVI 744067 . G A 3389.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.70;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3389,378,0 chrXVI 744256 . T A 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.912;HaplotypeScore=5.7075;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=-0.352;QD=23.47;ReadPosRankSum=1.705;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3037,324,0 chrXVI 744271 . C T 2364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=117;Dels=0.00;FS=2.908;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=0.242;QD=20.21;ReadPosRankSum=2.345;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2397,267,0 chrXVI 744272 . T A 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=119;Dels=0.00;FS=3.832;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-0.448;QD=20.20;ReadPosRankSum=1.643;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2437,270,0 chrXVI 744403 . A C 2387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=130;Dels=0.00;FS=6.123;HaplotypeScore=4.6983;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=-0.992;QD=18.36;ReadPosRankSum=2.914;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:3,126:130:99:2420,279,0 chrXVI 744410 . A C 2491 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.3814;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=18.59;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2524,276,0 chrXVI 744451 . A T 2477 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=17.08;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2510,273,0 chrXVI 744459 . A G 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=4.687;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;MQRankSum=-0.623;QD=15.50;ReadPosRankSum=1.664;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:2435,276,0 chrXVI 744462 . C T 2532 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.5795;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=16.66;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2565,273,0 chrXVI 744531 . A G 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=127;Dels=0.00;FS=4.307;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=0.419;QD=19.73;ReadPosRankSum=1.676;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,123:127:99:2539,300,0 chrXVI 744598 . C T 3371.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=26.13;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3371,363,0 chrXVI 744935 . C A 3439.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.22;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3439,378,0 chrXVI 745120 . C T 3306.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3306,360,0 chrXVI 745381 . T A 4784.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=211;Dels=0.00;FS=6.294;HaplotypeScore=14.4404;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.438;QD=22.67;ReadPosRankSum=2.426;SB=-2.590e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:4784,528,0 chrXVI 745441 . A G 4233.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=198;Dels=0.00;FS=3.282;HaplotypeScore=3.7367;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.945;QD=21.38;ReadPosRankSum=1.697;SB=-2.293e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4233,474,0 chrXVI 745449 . T C 4007.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.09;SB=-2.255e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:4007,459,0 chrXVI 745578 . A G 3613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=1.085;QD=21.77;ReadPosRankSum=1.669;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3613,414,0 chrXVI 745623 . C T 3148 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.7061;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.27;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3181,360,0 chrXVI 745634 . A T 3195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.728;DP=144;Dels=0.00;FS=2.586;HaplotypeScore=2.6616;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-0.252;QD=22.19;ReadPosRankSum=2.923;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:3228,354,0 chrXVI 745701 . T C 3105 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.66;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3138,342,0 chrXVI 745879 . C T 2845 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.53;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2878,312,0 chrXVI 746398 . A G 3143 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3176,348,0 chrXVI 746530 . G A 4238.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.64;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4238,459,0 chrXVI 746797 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.38;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3032,333,0 chrXVI 746969 . A C 2447 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=23.53;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2480,279,0 chrXVI 747066 . T C 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=127;Dels=0.00;FS=3.043;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=-0.128;QD=21.23;ReadPosRankSum=2.410;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:2,123:127:99:2729,309,0 chrXVI 747080 . G C 2491 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=19.31;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2524,282,0 chrXVI 747102 . A G 2319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=134;Dels=0.00;FS=7.559;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-1.377;QD=17.31;ReadPosRankSum=2.265;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2352,270,0 chrXVI 747369 . T C 3514.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=159;Dels=0.00;FS=3.501;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.665;QD=22.10;ReadPosRankSum=1.689;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3514,399,0 chrXVI 747411 . T C 3907.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=179;Dels=0.00;FS=10.420;HaplotypeScore=15.0772;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=0.365;QD=21.83;ReadPosRankSum=2.961;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:3,176:179:99:3907,450,0 chrXVI 747478 . G A 3398.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.35;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3398,384,0 chrXVI 747485 . A G 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=159;Dels=0.00;FS=12.775;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-0.819;QD=18.37;ReadPosRankSum=3.393;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:4,155:159:99:2954,345,0 chrXVI 747815 . G A 3342.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.43;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3342,360,0 chrXVI 747842 . T C 2916 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.83;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2949,336,0 chrXVI 747971 . C G 4586.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.48;SB=-1.917e+03 GT:AD:DP:GQ:PL 1/1:0,200:204:99:4586,537,0 chrXVI 748200 . T C 4155.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=183;Dels=0.00;FS=4.236;HaplotypeScore=15.6733;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.278;QD=22.70;ReadPosRankSum=1.694;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4155,462,0 chrXVI 748244 . A G 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.549;QD=23.29;ReadPosRankSum=1.686;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3517,399,0 chrXVI 748400 . C T 3209.99 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.5177;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3243,354,0 chrXVI 748650 . C T 3889.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.61;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3889,417,0 chrXVI 748741 . C T 3296.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.2918;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.35;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3296,360,0 chrXVI 749484 . A T 4094.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.020;QD=23.00;ReadPosRankSum=2.352;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:2,176:178:99:4094,459,0 chrXVI 749559 . A G 4576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=194;Dels=0.00;FS=2.960;HaplotypeScore=7.4460;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.610;QD=23.59;ReadPosRankSum=2.424;SB=-2.225e+03 GT:AD:DP:GQ:PL 1/1:2,191:194:99:4576,519,0 chrXVI 749668 . C T 5468.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.97;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,219:219:99:5468,594,0 chrXVI 749787 . A G 4407.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=206;Dels=0.00;FS=2.994;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.365;QD=21.39;ReadPosRankSum=2.414;SB=-2.228e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:4407,519,0 chrXVI 750029 . C T 2623 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.18;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2656,288,0 chrXVI 750033 . T C 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=133;Dels=0.00;FS=3.882;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-0.604;QD=19.54;ReadPosRankSum=1.680;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2632,306,0 chrXVI 750118 . C T 3675.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.18;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3675,393,0 chrXVI 750488 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2831,312,0 chrXVI 750588 . T C 3333.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.169;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.682;QD=23.98;ReadPosRankSum=1.707;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3333,378,0 chrXVI 750734 . A G 2526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=122;Dels=0.00;FS=6.662;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.486;QD=20.70;ReadPosRankSum=2.306;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:2,118:122:99:2559,285,0 chrXVI 750807 . T C 3597.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3597,405,0 chrXVI 750943 . C G 4128.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.8482;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.68;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:4128,456,0 chrXVI 751172 . A G 5060.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=219;Dels=0.00;FS=9.275;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.607;QD=23.11;ReadPosRankSum=2.958;SB=-2.720e+03 GT:AD:DP:GQ:PL 1/1:3,214:219:99:5060,558,0 chrXVI 751586 . G A 4014.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.18;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,179:181:99:4014,441,0 chrXVI 751611 . G T 4151.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.8801;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.32;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4151,453,0 chrXVI 752166 . C A 2619 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2652,288,0 chrXVI 752508 . T C 5956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.428;QD=22.65;ReadPosRankSum=1.706;SB=-2.929e+03 GT:AD:DP:GQ:PL 1/1:1,262:263:99:5956,687,0 chrXVI 752721 . G C 6153.01 PASS AC=2;AF=1.00;AN=2;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=25.3877;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.59;SB=-3.376e+03 GT:AD:DP:GQ:PL 1/1:0,283:285:99:6153,696,0 chrXVI 753099 . G A 2423 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.8272;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.83;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2456,264,0 chrXVI 753173 . G A 2677 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.02;FS=0.000;HaplotypeScore=13.7091;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.94;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2710,291,0 chrXVI 753252 . C G 41.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.152;DP=122;Dels=0.00;FS=5.701;HaplotypeScore=111.5815;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;MQRankSum=1.664;QD=0.34;ReadPosRankSum=-2.925;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:117,3:122:9:74,9,0 chrXVI 753266 . T A 2326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=126;Dels=0.00;FS=2.872;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=-1.053;QD=18.46;ReadPosRankSum=2.056;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2359,264,0 chrXVI 753336 . A G 2833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.00;FS=3.637;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=0.595;QD=20.99;ReadPosRankSum=1.706;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2866,330,0 chrXVI 753339 . T C 2873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=0.076;QD=21.12;ReadPosRankSum=1.707;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2906,333,0 chrXVI 753414 . A T 2502 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.86;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2535,279,0 chrXVI 753479 . A C 4803.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=23.78;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:0,202:202:99:4803,534,0 chrXVI 753507 . C T 4847.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=5.8258;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=24.86;SB=-2.324e+03 GT:AD:DP:GQ:PL 1/1:0,194:195:99:4847,519,0 chrXVI 753634 . G A 3577.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.68;SB=-2.026e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3577,387,0 chrXVI 753640 . C T 3712.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=2.3857;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.71;SB=-2.162e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3712,405,0 chrXVI 754434 . G A 3273.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=17.4750;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.82;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3273,357,0 chrXVI 754681 . G A 3304.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.12;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3304,363,0 chrXVI 754744 . T A 3570.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3570,396,0 chrXVI 755191 . A G 3165 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.262;DP=178;Dels=0.01;FS=8.880;HaplotypeScore=6.7390;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=-0.952;QD=17.78;ReadPosRankSum=2.571;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:4,173:177:99:3198,372,0 chrXVI 755194 . C T 3403.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=4.4095;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=0.513;QD=19.01;ReadPosRankSum=1.655;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3403,369,0 chrXVI 755201 . A G 3169 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=0.057;QD=17.41;ReadPosRankSum=1.713;SB=-2.204e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3202,366,0 chrXVI 755242 . T G 3272.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=12.6413;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=17.98;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3272,369,0 chrXVI 755536 . G A 3049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.265;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.705;QD=24.01;ReadPosRankSum=1.677;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:3082,330,0 chrXVI 755692 . C T 2306 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.7679;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.41;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2339,261,0 chrXVI 755818 . C T 3421.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3421,375,0 chrXVI 755941 . A T 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=-1.059;QD=20.12;ReadPosRankSum=1.700;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2206,240,0 chrXVI 755950 . G C 1961 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=18.16;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1994,234,0 chrXVI 756115 . T G 2712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=0.117;QD=20.39;ReadPosRankSum=1.680;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2745,324,0 chrXVI 756136 . G A 3092 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.60;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3125,339,0 chrXVI 756465 . A G 2993 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=24.14;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3026,336,0 chrXVI 756511 . T C 3356.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.47;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3356,387,0 chrXVI 756638 . T C 4615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=197;Dels=0.00;FS=2.917;HaplotypeScore=8.9801;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=1.410;QD=23.43;ReadPosRankSum=2.399;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:2,194:197:99:4615,528,0 chrXVI 756700 . T C 4107.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=213;Dels=0.00;FS=5.676;HaplotypeScore=8.8968;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=0.635;QD=19.28;ReadPosRankSum=2.351;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:3,209:213:99:4107,471,0 chrXVI 756704 . T G 3935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=204;Dels=0.00;FS=3.832;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-1.408;QD=19.29;ReadPosRankSum=1.493;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:1,202:204:99:3935,450,0 chrXVI 756770 . G A 3193 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.8940;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=17.26;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3226,354,0 chrXVI 756785 . A C 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.8879;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-0.849;QD=18.82;ReadPosRankSum=2.281;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:2,173:175:99:3293,357,0 chrXVI 756838 . C T 3183 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=18.29;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3216,351,0 chrXVI 756856 . G A 3446.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.39;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3446,375,0 chrXVI 756886 . G A 3869.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.74;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3869,426,0 chrXVI 756925 . G T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.79;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3647,405,0 chrXVI 757111 . T C 2927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=133;Dels=0.00;FS=2.643;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=1.599;QD=22.01;ReadPosRankSum=2.413;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2960,339,0 chrXVI 757135 . G T 3049 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.9244;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.42;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3082,336,0 chrXVI 757526 . G T 4842.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=17.9755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-2.641e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:4842,549,0 chrXVI 757653 . T C 4602.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=18.94;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:0,243:243:99:4602,513,0 chrXVI 757669 . A G 4931.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=9.2426;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.000;QD=18.68;ReadPosRankSum=1.692;SB=-2.944e+03 GT:AD:DP:GQ:PL 1/1:1,259:264:99:4931,561,0 chrXVI 757740 . C T 5739.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=15.4386;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.42;SB=-2.964e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5739,630,0 chrXVI 758082 . A G 6186.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=283;Dels=0.00;FS=5.608;HaplotypeScore=16.1014;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.004;QD=21.86;ReadPosRankSum=2.947;SB=-3.020e+03 GT:AD:DP:GQ:PL 1/1:3,279:282:99:6186,684,0 chrXVI 758116 . G A 5757.01 PASS AC=2;AF=1.00;AN=2;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=12.5697;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.56;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:0,267:267:99:5757,627,0 chrXVI 758284 . G A 3538.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.1812;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.84;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3538,387,0 chrXVI 758337 . T G 3146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=144;Dels=0.01;FS=9.891;HaplotypeScore=14.3194;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.950;QD=21.85;ReadPosRankSum=2.936;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:3,139:143:99:3179,363,0 chrXVI 758383 . C T 2977 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5404;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.73;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3010,324,0 chrXVI 758409 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.92;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2817,312,0 chrXVI 758616 . T C 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=3.399;HaplotypeScore=3.9773;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.346;QD=22.64;ReadPosRankSum=1.699;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2410,279,0 chrXVI 758638 . A C 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=0.782;QD=21.65;ReadPosRankSum=1.701;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2480,279,0 chrXVI 758717 . T C 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=120;Dels=0.00;FS=4.284;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.646;QD=20.75;ReadPosRankSum=1.703;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2523,294,0 chrXVI 758824 . G T 1653 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.34;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1686,183,0 chrXVI 759010 . A G 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=120;Dels=0.00;FS=11.311;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.297;QD=24.31;ReadPosRankSum=2.409;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2950,336,0 chrXVI 759355 . C G 3897.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.92;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3897,435,0 chrXVI 759400 . T G 3876.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=169;Dels=0.00;FS=9.189;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.824;QD=22.93;ReadPosRankSum=2.421;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:2,167:169:99:3876,432,0 chrXVI 759469 . T G 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=166;Dels=0.00;FS=3.861;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-1.690;QD=21.35;ReadPosRankSum=1.690;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:1,162:166:99:3544,399,0 chrXVI 759538 . T A 4039.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=174;Dels=0.00;FS=3.215;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.936;QD=23.21;ReadPosRankSum=1.712;SB=-2.289e+03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4039,432,0 chrXVI 759544 . A T 3811.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.42;SB=-2.166e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3811,417,0 chrXVI 759776 . C A 3363.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.03;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3363,369,0 chrXVI 759895 . C G 2743 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2776,327,0 chrXVI 759936 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2667,288,0 chrXVI 760007 . C T 3664.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.62;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3664,411,0 chrXVI 760748 . T A 3034 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.7750;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3067,339,0 chrXVI 760849 . C T 3002 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.57;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3035,336,0 chrXVI 760882 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.20;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2852,318,0 chrXVI 761136 . G A 3899.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.3449;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.35;SB=-2.044e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3899,426,0 chrXVI 761160 . T C 3760.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.86;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3760,435,0 chrXVI 761833 . A T 2837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=130;Dels=0.00;FS=2.978;HaplotypeScore=15.0747;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.126;QD=21.82;ReadPosRankSum=2.374;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2870,315,0 chrXVI 761908 . T C 3610.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.85;SB=-1.901e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3610,405,0 chrXVI 762059 . A T 3055 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3088,330,0 chrXVI 762178 . T C 2494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;DP=118;Dels=0.00;FS=5.315;HaplotypeScore=11.1915;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.383;QD=21.14;ReadPosRankSum=2.905;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:3,113:118:99:2527,285,0 chrXVI 762631 . A G 3125 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.55;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3158,363,0 chrXVI 762722 . C T 2580 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.43;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2613,282,0 chrXVI 762781 . T C 2799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=120;Dels=0.00;FS=2.874;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.564;QD=23.32;ReadPosRankSum=2.409;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2832,330,0 chrXVI 763440 . T C 3711.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.28;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3711,432,0 chrXVI 764101 . T G 4445.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.68;SB=-2.413e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4445,522,0 chrXVI 764416 . A G 3905.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=-1.690;QD=23.38;ReadPosRankSum=1.690;SB=-2.015e+03 GT:AD:DP:GQ:PL 1/1:1,164:167:99:3905,432,0 chrXVI 764431 . C T 3846.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.45;SB=-2.085e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3846,417,0 chrXVI 764615 . A T 3808.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.53;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3808,411,0 chrXVI 764918 . A G 3781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.139;DP=158;Dels=0.00;FS=3.038;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.086;QD=23.93;ReadPosRankSum=2.356;SB=-1.926e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:3781,432,0 chrXVI 765577 . C T 3629.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3629,402,0 chrXVI 765757 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.91;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3103,345,0 chrXVI 766111 . T C 4163.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=166;Dels=0.00;FS=2.946;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.037;QD=25.08;ReadPosRankSum=2.420;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:4163,462,0 chrXVI 766198 . G A 4097.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=17.2547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.76;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:4097,447,0 chrXVI 766340 . C A 4289.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=16.5945;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.70;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4289,471,0 chrXVI 766882 . T C 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=3.391;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.383;QD=20.56;ReadPosRankSum=1.706;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2727,318,0 chrXVI 767513 . C T 2668 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.40;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2701,297,0 chrXVI 767542 . A T 2307 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.40;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2340,261,0 chrXVI 767802 . G A 3522.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.01;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3522,384,0 chrXVI 767821 . T C 3207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.665;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.7073;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-0.494;QD=19.44;ReadPosRankSum=2.787;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:3,162:165:99:3240,372,0 chrXVI 768045 . G A 4427.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.80;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:0,184:186:99:4427,477,0 chrXVI 768715 . G A 4996.01 PASS AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.79;SB=-2.704e+03 GT:AD:DP:GQ:PL 1/1:0,209:210:99:4996,540,0 chrXVI 768950 . A G 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.095;QD=22.34;ReadPosRankSum=1.704;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2825,321,0 chrXVI 768998 . A G 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=9.0971;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-1.077;QD=19.44;ReadPosRankSum=1.701;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2210,246,0 chrXVI 769166 . T C 2495 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2507;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=22.89;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2528,285,0 chrXVI 769659 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.48;MQ0=0;QD=5.95;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:49,6,0 chrXVI 769669 . T A 163.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.96;MQ0=0;MQRankSum=-2.413;QD=2.40;ReadPosRankSum=2.340;SB=-2.521e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:21:196,21,0 chrXVI 769677 . A G 374 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=36.40;MQ0=0;QD=4.62;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:45:407,45,0 chrXVI 769908 . T A 3338.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=24.54;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3338,363,0 chrXVI 770049 . A T 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=7.911;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-0.768;QD=21.63;ReadPosRankSum=2.341;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2975,327,0 chrXVI 770077 . T C 2955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.049;QD=20.96;ReadPosRankSum=1.683;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2988,336,0 chrXVI 770162 . A T 3162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=3.658;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.027;QD=24.14;ReadPosRankSum=1.705;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3195,348,0 chrXVI 770226 . T G 2466 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.08;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2499,279,0 chrXVI 770238 . G T 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=119;Dels=0.00;FS=2.869;HaplotypeScore=6.2866;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.740;QD=21.41;ReadPosRankSum=0.010;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2581,282,0 chrXVI 770667 . C G 3606.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=156.5657;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.08;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3606,420,0 chrXVI 770699 . T A 3681.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=20.01;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3681,399,0 chrXVI 770786 . A T 3159 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.73;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3192,351,0 chrXVI 771254 . A G 1056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;DP=49;Dels=0.00;FS=4.025;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.372;QD=21.55;ReadPosRankSum=1.660;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:1,47:49:99:1089,120,0 chrXVI 772366 . C T 3852.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.89;SB=-2.167e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3852,417,0 chrXVI 772648 . A G 3281.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.17;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3281,378,0 chrXVI 772867 . A G 2791 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.8697;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.47;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2824,330,0 chrXVI 773032 . T C 2186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=4.455;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.948;QD=20.62;ReadPosRankSum=1.699;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2219,249,0 chrXVI 773660 . A T 75.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:108,12,0 chrXVI 774130 . C T 4166.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=21.36;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:4166,471,0 chrXVI 774271 . C T 4372.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=14.3879;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.89;SB=-2.318e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4372,474,0 chrXVI 774820 . A G 3590.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=181;Dels=0.00;FS=8.193;HaplotypeScore=115.4051;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;MQRankSum=-0.021;QD=19.83;ReadPosRankSum=2.381;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:2,177:181:99:3590,420,0 chrXVI 775111 . C T 2827 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.36;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2860,309,0 chrXVI 775174 . C A 3097 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3130,348,0 chrXVI 775853 . T G 1441 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=16.01;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1474,168,0 chrXVI 775873 . T A 564.05 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.893;DP=82;Dels=0.04;FS=4.500;HaplotypeScore=77.3965;MLEAC=1;MLEAF=0.500;MQ=44.93;MQ0=0;MQRankSum=3.097;QD=6.88;ReadPosRankSum=-5.259;SB=-4.030e+02 GT:AD:DP:GQ:PL 0/1:30,49:79:17:594,0,17 chrXVI 775917 . C A 2265 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=14.7915;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=13.56;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:2298,255,0 chrXVI 776164 . G A 4543.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.2647;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.56;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:4543,504,0 chrXVI 776262 . G A 3572.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.97;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3572,390,0 chrXVI 776361 . G C 2868 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.76;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2901,327,0 chrXVI 776624 . T C 3080 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.0208;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=18.12;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3113,351,0 chrXVI 776676 . G A 3018 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=21.25;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3051,342,0 chrXVI 776686 . A G 2842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.414;QD=21.21;ReadPosRankSum=1.655;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2875,324,0 chrXVI 776791 . C T 2956 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=23.09;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2989,330,0 chrXVI 776883 . T C 1750 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=21.60;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1783,210,0 chrXVI 776885 . T C 1658 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=0;QD=20.99;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1691,204,0 chrXVI 776897 . C G 1353 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;QD=20.50;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1386,162,0 chrXVI 776901 . T C 1249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=4.631;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-0.596;QD=20.48;ReadPosRankSum=1.675;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1282,150,0 chrXVI 776990 . G C 1246 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=18.88;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1279,144,0 chrXVI 777033 . T C 1387 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=17.78;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1420,162,0 chrXVI 777082 . T A 621 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=20.03;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:72:654,72,0 chrXVI 777117 . C G 300 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.75;MQ0=0;QD=12.50;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:39:333,39,0 chrXVI 777126 . T A 502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.928;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.73;MQ0=0;MQRankSum=-2.125;QD=13.21;ReadPosRankSum=2.321;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:2,36:38:60:535,60,0 chrXVI 777135 . G T 646 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=38.50;MQ0=0;QD=15.02;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:75:679,75,0 chrXVI 777150 . C T 691 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.19;MQ0=0;QD=12.34;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:78:724,78,0 chrXVI 777167 . A G 914 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=13.44;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:947,111,0 chrXVI 777273 . A T 1919 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.65;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1952,213,0 chrXVI 777332 . C T 2417 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=22.59;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2450,264,0 chrXVI 777410 . C T 2575 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.46;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2608,285,0 chrXVI 777662 . G A 2292 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.7485;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.22;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2325,252,0 chrXVI 777676 . C T 2772 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.83;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2805,303,0 chrXVI 778073 . G A 3433.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.32;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3433,372,0 chrXVI 778075 . C T 3510.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.94;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3510,381,0 chrXVI 778251 . C T 4277.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.03;SB=-1.869e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4277,462,0 chrXVI 778334 . G A 3471.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.99;SB=-1.874e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3471,375,0 chrXVI 778447 . C T 3313.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.94;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3313,360,0 chrXVI 778470 . G A 3614.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.47;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3614,399,0 chrXVI 778611 . C A 4005.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.5078;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.57;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:4005,441,0 chrXVI 778909 . T C 4161.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=8.9949;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.25;SB=-1.743e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:4161,471,0 chrXVI 779145 . T A 3871.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.1100;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3871,420,0 chrXVI 779337 . G A 4489.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.50;SB=-2.199e+03 GT:AD:DP:GQ:PL 1/1:0,187:191:99:4489,486,0 chrXVI 779584 . T A 3633.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.57;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3633,399,0 chrXVI 779914 . A G 3121 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.01;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3154,351,0 chrXVI 780119 . A C 3487.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=162;Dels=0.00;FS=3.287;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-0.813;QD=21.52;ReadPosRankSum=1.647;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3487,402,0 chrXVI 780140 . G A 2866 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.8957;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.93;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2899,312,0 chrXVI 780199 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.12;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2468,270,0 chrXVI 780338 . T A 2630 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.48;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2663,291,0 chrXVI 780448 . T C 2291 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.6545;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2324,264,0 chrXVI 780767 . T A 3154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=140;Dels=0.00;FS=2.984;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.044;QD=22.53;ReadPosRankSum=2.415;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:3187,348,0 chrXVI 780780 . G T 3124 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.31;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3157,342,0 chrXVI 781039 . A T 3339.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.87;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3339,366,0 chrXVI 781070 . C T 3656.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6805;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.29;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3656,393,0 chrXVI 781405 . A C 2642 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.38;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2675,306,0 chrXVI 781630 . A G 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=131;Dels=0.00;FS=9.234;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-0.562;QD=19.14;ReadPosRankSum=2.947;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:3,128:131:99:2540,294,0 chrXVI 781643 . C A 2439 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=20.32;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2472,273,0 chrXVI 781649 . C A 2305 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=19.37;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2338,252,0 chrXVI 781743 . T C 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=135;Dels=0.00;FS=2.736;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.257;QD=21.80;ReadPosRankSum=2.413;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2976,330,0 chrXVI 782203 . C T 3034 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:3067,342,0 chrXVI 783424 . C A 2199 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.39;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2232,240,0 chrXVI 783637 . A G 2095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=95;Dels=0.00;FS=3.979;HaplotypeScore=9.6978;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.055;QD=22.05;ReadPosRankSum=1.696;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2128,243,0 chrXVI 783667 . A G 2158 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.37;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2191,249,0 chrXVI 783722 . A G 2305 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2338,258,0 chrXVI 784063 . A T 3135 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=16.0135;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3168,348,0 chrXVI 784177 . C T 3530.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3530,381,0 chrXVI 784560 . A C 3498.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.953;DP=151;Dels=0.00;FS=2.521;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.242;QD=23.17;ReadPosRankSum=1.060;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:3,147:151:99:3498,380,0 chrXVI 784693 . T C 3953.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.8993;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3953,459,0 chrXVI 784729 . C T 4269.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,195:197:99:4269,462,0 chrXVI 784888 . T C 3204.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=151;Dels=0.00;FS=3.040;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.223;QD=21.23;ReadPosRankSum=2.400;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:2,147:151:99:3238,366,0 chrXVI 785197 . A G 2943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.240;QD=22.64;ReadPosRankSum=1.705;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2976,336,0 chrXVI 785578 . A G 3197 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.34;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3230,363,0 chrXVI 785712 . T G 4228.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=6.3984;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.62;SB=-2.097e+03 GT:AD:DP:GQ:PL 1/1:0,176:179:99:4228,471,0 chrXVI 785737 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.803;DP=172;Dels=0.00;FS=14.384;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.208;QD=22.20;ReadPosRankSum=2.057;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:4,168:172:99:3819,416,0 chrXVI 785910 . A G 3484.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=159;Dels=0.00;FS=2.976;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.363;QD=21.91;ReadPosRankSum=2.357;SB=-1.757e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3484,405,0 chrXVI 786015 . A G 3984.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=164.6562;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=0.923;QD=22.51;ReadPosRankSum=2.394;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:2,175:177:99:3984,447,0 chrXVI 786102 . C A 3517.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.04;FS=0.000;HaplotypeScore=15.9972;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.12;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3517,381,0 chrXVI 786231 . C T 9361.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.307;DP=367;Dels=0.00;FS=0.000;HaplotypeScore=6.4445;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;MQRankSum=0.741;QD=25.51;ReadPosRankSum=1.619;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:1,366:367:99:9361,1024,0 chrXVI 786234 . C T 9495.01 filter AC=2;AF=1.00;AN=2;DP=392;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=0;QD=24.22;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,392:392:99:9495,1033,0 chrXVI 786303 . T C 8092.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.172;DP=360;Dels=0.00;FS=2.209;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;MQRankSum=1.402;QD=22.48;ReadPosRankSum=4.168;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:6,354:360:99:8092,941,0 chrXVI 786306 . G A 8729.01 filter AC=2;AF=1.00;AN=2;DP=378;Dels=0.00;FS=0.000;HaplotypeScore=13.2038;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;QD=23.09;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,375:378:99:8729,952,0 chrXVI 786444 . T C 4241.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.398;DP=960;DS;Dels=0.01;FS=29.948;HaplotypeScore=614.9903;MLEAC=1;MLEAF=0.500;MQ=37.33;MQ0=0;MQRankSum=-5.313;QD=4.42;ReadPosRankSum=-12.511;SB=-7.480e+02 GT:AD:DP:GQ:PL 0/1:649,299:954:99:4241,0,1957 chrXVI 786450 . T G 3474.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.121;DP=914;DS;Dels=0.01;FS=80.030;HaplotypeScore=585.4401;MLEAC=1;MLEAF=0.500;MQ=37.01;MQ0=0;MQRankSum=-8.815;QD=3.80;ReadPosRankSum=-17.317;SB=-3.380e+02 GT:AD:DP:GQ:PL 0/1:355,263:908:99:3474,0,2239 chrXVI 787292 . G A 4002.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=10.8747;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=23.13;SB=-2.096e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4002,435,0 chrXVI 787380 . G A 3113 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.03;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3146,342,0 chrXVI 787485 . A G 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-0.430;QD=20.11;ReadPosRankSum=1.706;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2707,300,0 chrXVI 787542 . C T 2322 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=17.59;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2355,255,0 chrXVI 787549 . C A 2238 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;QD=17.08;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2271,252,0 chrXVI 787570 . T A 151.06 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=105.9285;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=1.22;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:21:184,21,0 chrXVI 787650 . A T 2902 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=9.5223;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.82;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2935,324,0 chrXVI 787696 . A G 2749 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3145;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.17;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2782,315,0 chrXVI 787957 . C T 3443.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.74;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3443,378,0 chrXVI 788088 . A G 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=3.340;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.324;QD=20.79;ReadPosRankSum=1.676;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2590,288,0 chrXVI 788197 . A G 3150 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=15.1017;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.87;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3183,375,0 chrXVI 788230 . T C 3344.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.585;QD=23.72;ReadPosRankSum=1.708;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3344,381,0 chrXVI 788320 . G A 2716 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2749,297,0 chrXVI 788362 . C T 2428 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.48;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2461,267,0 chrXVI 788440 . C T 3325.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.25;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3325,357,0 chrXVI 788617 . C A 4212.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.35;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4212,471,0 chrXVI 788833 . G A 6448.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=20.3002;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.45;SB=-2.737e+03 GT:AD:DP:GQ:PL 1/1:0,274:275:99:6448,705,0 chrXVI 789056 . T C 8509.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=382;Dels=0.00;FS=10.411;HaplotypeScore=15.9196;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-2.188;QD=22.27;ReadPosRankSum=2.944;SB=-4.161e+03 GT:AD:DP:GQ:PL 1/1:3,376:382:99:8509,960,0 chrXVI 789289 . G A 2696 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=21.6684;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=14.65;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,178:184:99:2729,303,0 chrXVI 789402 . T C 3430.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=197;Dels=0.00;FS=5.163;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.169;QD=17.41;ReadPosRankSum=1.714;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3430,399,0 chrXVI 789549 . G A 2750 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.92;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2783,300,0 chrXVI 789570 . T G 2243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=4.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-1.283;QD=20.77;ReadPosRankSum=1.636;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2276,261,0 chrXVI 789596 . A G 2085 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2595;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=18.78;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2118,249,0 chrXVI 789818 . G C 2509 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.20;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2542,288,0 chrXVI 789967 . T C 2099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=100;Dels=0.00;FS=3.010;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.312;QD=20.99;ReadPosRankSum=1.697;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2132,243,0 chrXVI 789991 . A G 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=116;Dels=0.03;FS=6.112;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-1.831;QD=20.17;ReadPosRankSum=2.938;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2373,267,0 chrXVI 790006 . G A 2787 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=9.6651;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.30;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2820,306,0 chrXVI 790073 . T C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=116.7714;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=0.17;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,7:124:6:52,6,0 chrXVI 790106 . C G 2316 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.02;FS=0.000;HaplotypeScore=19.1203;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=18.83;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2349,264,0 chrXVI 790660 . A C 4255.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=8.2200;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.16;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,189:192:99:4255,474,0 chrXVI 790673 . C G 3815.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.440;DP=188;Dels=0.00;FS=4.963;HaplotypeScore=5.9413;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-0.683;QD=20.29;ReadPosRankSum=0.403;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:1,184:188:99:3815,404,0 chrXVI 790742 . A G 3391.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.31;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3391,384,0 chrXVI 790766 . A C 3054 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=19.09;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3087,354,0 chrXVI 790820 . C T 2386 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.22;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2419,258,0 chrXVI 790856 . T C 2196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=115;Dels=0.00;FS=3.021;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=1.056;QD=19.10;ReadPosRankSum=2.232;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:2,111:115:99:2229,249,0 chrXVI 790859 . A G 2148 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=18.68;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2181,249,0 chrXVI 791329 . A G 3785.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=162;Dels=0.00;FS=7.653;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.404;QD=23.36;ReadPosRankSum=2.389;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:3785,426,0 chrXVI 791787 . G A 3852.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.0879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-2.120e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3852,414,0 chrXVI 791992 . C A 4598.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=15.5548;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.95;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:4598,498,0 chrXVI 792460 . C T 3675.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.426;DP=182;Dels=0.00;FS=3.769;HaplotypeScore=4.4832;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-1.292;QD=20.19;ReadPosRankSum=-0.373;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3675,379,0 chrXVI 792467 . C T 3601.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.6945;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=20.23;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3601,393,0 chrXVI 792647 . G A 4586.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=24.14;SB=-2.345e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4586,507,0 chrXVI 793048 . T C 2861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=184;Dels=0.01;FS=3.000;HaplotypeScore=5.1747;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=-0.785;QD=15.55;ReadPosRankSum=2.395;SB=-2.137e+03 GT:AD:DP:GQ:PL 1/1:2,178:183:99:2894,324,0 chrXVI 793049 . T C 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=189;Dels=0.00;FS=9.046;HaplotypeScore=7.4972;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.365;QD=15.03;ReadPosRankSum=3.293;SB=-2.326e+03 GT:AD:DP:GQ:PL 1/1:4,185:189:99:2874,321,0 chrXVI 793555 . T G 3016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=140;Dels=0.00;FS=3.796;HaplotypeScore=11.8803;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.209;QD=21.54;ReadPosRankSum=1.682;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3049,357,0 chrXVI 793650 . G A 2614 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.3226;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.53;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2647,294,0 chrXVI 793838 . G C 3195 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.99;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,135:139:99:3228,360,0 chrXVI 793867 . G A 3450.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.56;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3450,369,0 chrXVI 793926 . A G 3403.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.24;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3403,402,0 chrXVI 794337 . T C 4955.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=9.7880;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.73;SB=-2.099e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:4955,581,0 chrXVI 794672 . T C 3067 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=18.93;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3100,357,0 chrXVI 794674 . T A 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=0.506;QD=19.66;ReadPosRankSum=1.711;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3198,348,0 chrXVI 794725 . G A 2376 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.1904;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=17.34;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2409,267,0 chrXVI 795027 . C T 2927 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.1904;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.80;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2960,321,0 chrXVI 795138 . A G 2367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.271;DP=122;Dels=0.00;FS=2.432;HaplotypeScore=4.8797;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=-1.416;QD=19.40;ReadPosRankSum=3.343;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:4,118:122:99:2400,273,0 chrXVI 795139 . G A 2417 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6845;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=20.48;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2450,273,0 chrXVI 795157 . G A 2286 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=20.97;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2319,249,0 chrXVI 795197 . A G 2162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.4930;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-1.039;QD=21.20;ReadPosRankSum=1.697;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2195,243,0 chrXVI 795291 . G A 1919 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1952,216,0 chrXVI 795527 . T C 4175.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.195;QD=23.46;ReadPosRankSum=1.713;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4175,480,0 chrXVI 795924 . A T 5080.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=205;Dels=0.00;FS=4.857;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.803;QD=24.78;ReadPosRankSum=1.715;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,204:205:99:5080,564,0 chrXVI 796236 . T C 3800.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.47;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,176:177:99:3800,420,0 chrXVI 796263 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.246;DP=166;Dels=0.00;FS=16.054;HaplotypeScore=11.5450;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.155;QD=21.54;ReadPosRankSum=3.353;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:4,160:166:99:3576,399,0 chrXVI 796733 . T C 3510.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.72;SB=-1.906e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3510,393,0 chrXVI 796824 . T C 4512.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=16.8510;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.255;QD=22.67;ReadPosRankSum=1.679;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:1,196:199:99:4512,501,0 chrXVI 796878 . A T 3939.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.77;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3939,429,0 chrXVI 797063 . T C 2609 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.2924;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=17.87;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,143:146:99:2642,303,0 chrXVI 797065 . C T 2572 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.413;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4956;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=0.455;QD=17.99;ReadPosRankSum=1.609;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,140:143:99:2605,285,0 chrXVI 797066 . C T 2538 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9729;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=18.39;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2571,288,0 chrXVI 797069 . T C 2523 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.530;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;MQRankSum=-0.695;QD=17.16;ReadPosRankSum=1.331;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2556,294,0 chrXVI 797136 . C A 3980.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=173;Dels=0.00;FS=3.572;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-1.272;QD=23.01;ReadPosRankSum=0.010;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:1,172:173:99:3980,429,0 chrXVI 797247 . G A 2644 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.85;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2677,285,0 chrXVI 797418 . G A 3341.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.5752;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.75;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3341,360,0 chrXVI 797530 . T C 2705 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.81;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2738,318,0 chrXVI 797712 . C T 2815 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2848,303,0 chrXVI 797997 . A T 2444 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;QD=24.20;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2477,270,0 chrXVI 798164 . T C 2700 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2733,318,0 chrXVI 798448 . A G 4441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=195;Dels=0.00;FS=3.635;HaplotypeScore=18.6744;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.411;QD=22.77;ReadPosRankSum=1.696;SB=-2.090e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4441,498,0 chrXVI 798490 . A C 4983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=221;Dels=0.00;FS=11.300;HaplotypeScore=17.7117;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.023;QD=22.55;ReadPosRankSum=2.877;SB=-2.327e+03 GT:AD:DP:GQ:PL 1/1:3,217:221:99:4983,558,0 chrXVI 798639 . G A 4716.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,206:206:99:4716,516,0 chrXVI 798835 . C T 3377.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.45;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,140:144:99:3377,366,0 chrXVI 798911 . G A 4412.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.6964;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.10;SB=-2.406e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4412,477,0 chrXVI 798952 . T C 3823.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.97;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3823,423,0 chrXVI 798977 . C T 2743 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=17.81;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2776,309,0 chrXVI 799015 . T A 2108 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=131;Dels=0.00;FS=2.860;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;MQRankSum=0.779;QD=16.09;ReadPosRankSum=2.281;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2141,237,0 chrXVI 799022 . A G 2039 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=15.81;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2072,228,0 chrXVI 799025 . C T 2119 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;QD=16.55;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2152,234,0 chrXVI 799043 . G A 2481 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=18.38;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2514,276,0 chrXVI 799159 . T C 3726.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=163;Dels=0.00;FS=3.201;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=0.861;QD=22.86;ReadPosRankSum=1.690;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3726,423,0 chrXVI 799432 . C T 4063.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.33;SB=-1.819e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4063,456,0 chrXVI 799575 . C T 4339.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.08;SB=-2.348e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4339,468,0 chrXVI 799593 . T C 3929.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=181;Dels=0.00;FS=3.812;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=1.187;QD=21.71;ReadPosRankSum=1.713;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,177:181:99:3929,438,0 chrXVI 799713 . A C 3502.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=3.495;HaplotypeScore=8.1800;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.506;QD=21.62;ReadPosRankSum=1.711;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3502,396,0 chrXVI 799851 . T C 3100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=0.739;QD=21.53;ReadPosRankSum=1.708;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3133,357,0 chrXVI 799871 . C T 2857 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=20.85;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2890,312,0 chrXVI 799893 . A G 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=0.411;QD=18.16;ReadPosRankSum=1.657;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2557,288,0 chrXVI 799899 . T C 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=3.167;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=-0.774;QD=18.33;ReadPosRankSum=1.683;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2617,291,0 chrXVI 800037 . C A 2601 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.82;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2634,288,0 chrXVI 800109 . G C 2681 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=21.45;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2714,318,0 chrXVI 800157 . C A 2711 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.22;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2744,300,0 chrXVI 800175 . G A 2685 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.37;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2718,291,0 chrXVI 800298 . A G 2925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=3.979;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.818;QD=23.40;ReadPosRankSum=1.704;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2958,342,0 chrXVI 800388 . G A 3718.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.5096;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=24.62;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3718,405,0 chrXVI 800421 . A G 3329.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.9932;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.20;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3329,381,0 chrXVI 800445 . G A 3738.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.73;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,170:172:99:3738,405,0 chrXVI 800486 . G A 3519.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.256;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-0.559;QD=18.62;ReadPosRankSum=1.036;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3519,359,0 chrXVI 800493 . A G 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=189;Dels=0.00;FS=3.470;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=0.742;QD=17.35;ReadPosRankSum=1.677;SB=-2.195e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3279,372,0 chrXVI 800589 . A G 4735.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=22.23;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4735,525,0 chrXVI 800601 . G A 4560.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.31;SB=-2.635e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4560,489,0 chrXVI 800727 . A G 4875.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=11.2550;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=23.10;SB=-2.384e+03 GT:AD:DP:GQ:PL 1/1:0,211:211:99:4875,549,0 chrXVI 800844 . C T 5381.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.01;FS=0.000;HaplotypeScore=32.7812;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.81;SB=-2.807e+03 GT:AD:DP:GQ:PL 1/1:0,224:224:99:5381,580,0 chrXVI 800883 . A G 5087.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=215;Dels=0.00;FS=3.502;HaplotypeScore=20.2256;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.330;QD=23.66;ReadPosRankSum=1.265;SB=-2.288e+03 GT:AD:DP:GQ:PL 1/1:1,214:215:99:5087,570,0 chrXVI 800985 . C T 3150 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.44;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3183,345,0 chrXVI 801066 . G A 3565.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.2283;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.22;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3565,390,0 chrXVI 801138 . C T 3923.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.4213;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.37;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3923,426,0 chrXVI 801336 . C T 4061.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.22;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4061,447,0 chrXVI 801399 . A T 3616.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.94;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3616,393,0 chrXVI 801614 . T C 5507.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=15.2236;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.516;QD=23.43;ReadPosRankSum=2.418;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:2,232:235:99:5507,618,0 chrXVI 801650 . C T 5402.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=9.3253;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.67;SB=-2.088e+03 GT:AD:DP:GQ:PL 1/1:0,217:219:99:5402,591,0 chrXVI 801741 . G A 4505.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.1083;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.19;SB=-2.543e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4505,501,0 chrXVI 801756 . C G 4356.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=12.7537;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=19.53;SB=-2.650e+03 GT:AD:DP:GQ:PL 1/1:0,221:223:99:4356,495,0 chrXVI 801885 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.5129;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.38;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3528,384,0 chrXVI 801978 . T C 3275.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=148;Dels=0.00;FS=4.890;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.702;QD=22.13;ReadPosRankSum=1.685;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3275,372,0 chrXVI 802039 . G A 2429 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.28;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2462,267,0 chrXVI 802139 . T G 2280 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.57;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2313,255,0 chrXVI 802415 . A G 2599 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.41;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2632,312,0 chrXVI 802526 . T G 2163 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.9386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.90;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2196,246,0 chrXVI 802577 . T C 2964 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.63;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2997,342,0 chrXVI 802797 . C A 3949.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3949,429,0 chrXVI 802871 . C T 5354.01 PASS AC=2;AF=1.00;AN=2;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=13.5544;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.01;SB=-2.655e+03 GT:AD:DP:GQ:PL 1/1:0,222:223:99:5354,579,0 chrXVI 802959 . A G 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=189;Dels=0.00;FS=3.225;HaplotypeScore=12.6862;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=1.677;QD=21.96;ReadPosRankSum=1.677;SB=-2.169e+03 GT:AD:DP:GQ:PL 1/1:1,186:189:99:4151,492,0 chrXVI 803543 . A G 3585.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.1669;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.55;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3585,408,0 chrXVI 803590 . T C 3094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=138;Dels=0.00;FS=4.239;HaplotypeScore=9.1694;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.176;QD=22.42;ReadPosRankSum=1.707;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3127,351,0 chrXVI 804027 . T C 3166 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.78;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3199,354,0 chrXVI 804249 . A T 2470 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.05;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2503,273,0 chrXVI 804258 . T C 2277 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=20.33;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2310,267,0 chrXVI 804292 . A T 2700 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=23.28;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2733,294,0 chrXVI 804352 . C T 2053 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=25.04;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2086,225,0 chrXVI 804481 . T C 1816 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=24.21;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1849,210,0 chrXVI 804494 . G T 1819 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;QD=24.58;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1852,198,0 chrXVI 804714 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.51;MQ0=0;MQRankSum=0.747;QD=2.60;ReadPosRankSum=-0.747;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:1,7:8:6:52,6,0 chrXVI 804715 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.51;MQ0=0;MQRankSum=0.747;QD=2.72;ReadPosRankSum=-0.747;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:1,7:8:6:53,6,0 chrXVI 804739 . A G 68.51 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.72;MQ0=1;QD=5.71;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:1,11:12:12:101,12,0 chrXVI 804805 . A G 94.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.70;MQ0=1;MQRankSum=0.791;QD=7.86;ReadPosRankSum=1.423;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:2,10:12:15:127,15,0 chrXVI 804817 . T A 75.51 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.50;MQ0=3;QD=7.55;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:2,8:10:12:108,12,0 chrXVI 810482 . T C 65.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=9.36;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:98,12,0 chrXVI 810519 . T C 144.06 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.40;MQ0=0;QD=6.86;SB=-7.495e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:21:177,21,0 chrXVI 810552 . C T 300 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=25.8093;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=9.37;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:36:333,36,0 chrXVI 810599 . G A 1268 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=16.68;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1301,144,0 chrXVI 810641 . A G 2411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=4.652;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;MQRankSum=0.674;QD=22.32;ReadPosRankSum=1.668;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2444,273,0 chrXVI 810774 . T G 1251 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=18.67;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1284,147,0 chrXVI 810785 . G A 1490 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=20.14;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1523,165,0 chrXVI 811809 . C T 4179.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:4179,465,0 chrXVI 811965 . A G 3397.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=3.294;HaplotypeScore=5.6812;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.381;QD=21.50;ReadPosRankSum=1.688;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:3397,387,0 chrXVI 812334 . G A 2639 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=21.11;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2672,285,0 chrXVI 812347 . C G 2167 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=18.84;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2200,246,0 chrXVI 812355 . C T 2199 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=19.99;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2232,243,0 chrXVI 812500 . A T 56.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.017;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.7334;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-1.131;QD=0.44;ReadPosRankSum=3.640;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:5,123:128:12:89,12,0 chrXVI 812762 . T C 1698 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.96;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1731,198,0 chrXVI 812990 . T C 1721 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1754,204,0 chrXVI 813147 . T C 3676.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.9190;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.12;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3676,420,0 chrXVI 813201 . A G 3509.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.39;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3509,387,0 chrXVI 813327 . A G 3021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.466;DP=149;Dels=0.00;FS=2.506;HaplotypeScore=11.5309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.182;QD=20.28;ReadPosRankSum=2.507;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:3,146:149:99:3054,335,0 chrXVI 813372 . G A 4177.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.60;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4177,459,0 chrXVI 813489 . T C 3875.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=14.6105;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.66;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3875,438,0 chrXVI 813633 . G A 3874.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.32;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3874,417,0 chrXVI 813693 . G C 4783.01 PASS AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=5.1151;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.25;SB=-2.441e+03 GT:AD:DP:GQ:PL 1/1:0,214:215:99:4783,549,0 chrXVI 813714 . T C 4906.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.71;SB=-2.957e+03 GT:AD:DP:GQ:PL 1/1:0,225:226:99:4906,543,0 chrXVI 813738 . A G 4552.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=215;Dels=0.00;FS=3.176;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.777;QD=21.17;ReadPosRankSum=1.716;SB=-2.660e+03 GT:AD:DP:GQ:PL 1/1:1,213:215:99:4552,510,0 chrXVI 813879 . C G 4236.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=13.6538;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=19.98;SB=-2.192e+03 GT:AD:DP:GQ:PL 1/1:0,209:212:99:4236,492,0 chrXVI 814111 . T C 3658.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.02;SB=-1.856e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3658,411,0 chrXVI 814130 . C A 3285.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.47;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3285,354,0 chrXVI 814549 . T G 2354 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.78;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2387,267,0 chrXVI 814783 . A G 2348 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=13.0498;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=19.40;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2381,270,0 chrXVI 814795 . C T 2269 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.82;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2302,249,0 chrXVI 814846 . C T 2103 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=17.82;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2136,246,0 chrXVI 815624 . C T 3357.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.53;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3357,369,0 chrXVI 816544 . T C 3211.99 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.11;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3245,360,0 chrXVI 816745 . A G 2083 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2116,237,0 chrXVI 817039 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.00;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2700,288,0 chrXVI 818108 . T C 1951 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.03;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.44;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1984,225,0 chrXVI 818228 . G A 3509.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3509,378,0 chrXVI 818284 . C T 3744.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.4968;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.00;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3744,408,0 chrXVI 818562 . G A 1501.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.907;DP=300;Dels=0.00;FS=4.547;HaplotypeScore=8.0948;MLEAC=1;MLEAF=0.500;MQ=38.65;MQ0=0;MQRankSum=-2.802;QD=5.00;ReadPosRankSum=-13.038;SB=-1.001e+03 GT:AD:DP:GQ:PL 0/1:174,125:300:99:1531,0,762 chrXVI 818565 . C T 1427.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.711;DP=292;Dels=0.00;FS=5.470;HaplotypeScore=6.5174;MLEAC=1;MLEAF=0.500;MQ=38.15;MQ0=0;MQRankSum=-3.133;QD=4.89;ReadPosRankSum=-13.958;SB=-8.910e+02 GT:AD:DP:GQ:PL 0/1:177,115:292:99:1457,0,797 chrXVI 818568 . C T 1307.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=10.259;DP=296;Dels=0.00;FS=7.262;HaplotypeScore=8.8835;MLEAC=1;MLEAF=0.500;MQ=38.65;MQ0=0;MQRankSum=-3.552;QD=4.42;ReadPosRankSum=-13.555;SB=-7.890e+02 GT:AD:DP:GQ:PL 0/1:184,112:296:99:1337,0,865 chrXVI 818975 . A G 1991 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.42;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:2024,225,0 chrXVI 819102 . A G 1847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=3.227;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.929;QD=22.52;ReadPosRankSum=1.690;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1880,213,0 chrXVI 819289 . T C 1222 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=21.07;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1255,147,0 chrXVI 819318 . T C 868 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.04;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;QD=18.87;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:901,99,0 chrXVI 819377 . A G 920 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.68;MQ0=0;QD=22.44;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:953,105,0 chrXVI 819378 . A G 889 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.68;MQ0=0;QD=21.68;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:922,105,0 chrXVI 819411 . G A 1074 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=75.3876;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=23.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1107,120,0 chrXVI 819431 . A G 927 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=22.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:960,105,0 chrXVI 819444 . C G 795 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:96:828,96,0 chrXVI 819479 . C T 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.40;MQ0=0;QD=0.55;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,45:45:6:56,6,0 chrXVI 819489 . T A 45.97 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.22;MQ0=0;QD=1.04;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,44:44:9:78,9,0 chrXVI 819509 . A T 237 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=46.4980;MLEAC=2;MLEAF=1.00;MQ=30.28;MQ0=0;QD=4.84;SB=-2.802e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:30:270,30,0 chrXVI 819614 . C T 1500 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=23.08;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1533,168,0 chrXVI 819815 . T C 3368.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.522;QD=22.01;ReadPosRankSum=2.337;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3368,378,0 chrXVI 820797 . C T 3116 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.91;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3149,342,0 chrXVI 821166 . C T 3436.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3436,369,0 chrXVI 821241 . C A 2964 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.32;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2997,330,0 chrXVI 821382 . C T 2792 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.34;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2825,309,0 chrXVI 821526 . C T 142.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.367;DP=75;Dels=0.00;FS=5.438;HaplotypeScore=65.1225;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=2.132;QD=1.89;ReadPosRankSum=2.585;SB=-7.461e+02 GT:AD:DP:GQ:PL 1/1:8,66:75:21:175,21,0 chrXVI 821582 . G A 1214 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.02;FS=0.000;HaplotypeScore=20.0960;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=14.12;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1247,135,0 chrXVI 821586 . A G 1229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=2.799;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=-0.188;QD=14.46;ReadPosRankSum=2.363;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1262,144,0 chrXVI 822297 . C G 3515.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=18.31;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,190:192:99:3515,396,0 chrXVI 822351 . G A 4245.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.70;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4245,459,0 chrXVI 822502 . C T 3381.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.13;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3381,375,0 chrXVI 822514 . G A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.50;SB=-2.259e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3608,390,0 chrXVI 822808 . T C 7105.01 PASS AC=2;AF=1.00;AN=2;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=22.9630;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.63;SB=-3.324e+03 GT:AD:DP:GQ:PL 1/1:0,312:314:99:7105,801,0 chrXVI 822901 . A G 6818.01 PASS AC=2;AF=1.00;AN=2;DP=307;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=22.21;SB=-3.796e+03 GT:AD:DP:GQ:PL 1/1:0,306:307:99:6818,797,0 chrXVI 824056 . A G 3722.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=166;Dels=0.00;FS=3.310;HaplotypeScore=17.2190;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-0.892;QD=22.42;ReadPosRankSum=1.711;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:1,164:166:99:3722,414,0 chrXVI 824110 . C T 4119.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=24.23;SB=-1.924e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4119,456,0 chrXVI 824182 . A C 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-1.237;QD=22.86;ReadPosRankSum=1.701;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2593,294,0 chrXVI 824188 . G A 2489 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=23.93;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2522,273,0 chrXVI 824466 . T C 897 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:99:930,108,0 chrXVI 824483 . A T 1280 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1313,144,0 chrXVI 824738 . C T 3058 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.16;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3091,333,0 chrXVI 824813 . C T 2876 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.4015;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=19.83;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2909,315,0 chrXVI 824852 . C T 2273 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.43;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2306,249,0 chrXVI 824956 . G A 3058 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.71;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3091,342,0 chrXVI 825000 . T C 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=93.1490;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=0.155;QD=18.16;ReadPosRankSum=1.639;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2067,234,0 chrXVI 825040 . C G 1904 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=13.60;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,139:140:99:1937,219,0 chrXVI 825051 . A G 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=142;Dels=0.00;FS=6.690;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;MQRankSum=0.074;QD=13.35;ReadPosRankSum=1.707;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:1,139:142:99:1928,225,0 chrXVI 825536 . C T 4104.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.86;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4104,453,0 chrXVI 825600 . A C 3908.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.72;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3908,432,0 chrXVI 825738 . G A 4364.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.34;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,186:187:99:4364,486,0 chrXVI 826071 . C T 3533.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.03;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3533,390,0 chrXVI 826128 . A C 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=148;Dels=0.00;FS=4.401;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-0.997;QD=21.72;ReadPosRankSum=1.613;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,145:148:99:3247,369,0 chrXVI 826190 . G A 2835 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.00;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2868,312,0 chrXVI 826395 . C T 3103 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=22.32;SB=-1.876e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3136,339,0 chrXVI 826410 . A C 3122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=152;Dels=0.00;FS=3.040;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-0.593;QD=20.54;ReadPosRankSum=1.616;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,148:152:99:3155,354,0 chrXVI 826518 . C T 5339.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.83;SB=-2.750e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5339,585,0 chrXVI 826577 . C A 3932.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=13.0585;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.47;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,173:175:99:3932,426,0 chrXVI 826664 . C G 3435.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.88;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3435,390,0 chrXVI 826923 . T C 2024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=0.104;QD=20.24;ReadPosRankSum=1.663;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2057,231,0 chrXVI 826929 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=19.73;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2006,222,0 chrXVI 827031 . A T 3828.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.92;SB=-2.194e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3828,414,0 chrXVI 827037 . A G 3629.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=19.41;SB=-2.048e+03 GT:AD:DP:GQ:PL 1/1:0,187:187:99:3629,426,0 chrXVI 827142 . C T 5248.01 PASS AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=10.5540;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.43;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,223:224:99:5248,562,0 chrXVI 827271 . T C 3961.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=218;Dels=0.00;FS=4.280;HaplotypeScore=12.6422;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.231;QD=18.17;ReadPosRankSum=1.684;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:1,216:218:99:3961,447,0 chrXVI 827306 . C T 4943.01 PASS AC=2;AF=1.00;AN=2;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=12.5086;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.62;SB=-2.320e+03 GT:AD:DP:GQ:PL 1/1:0,251:252:99:4943,534,0 chrXVI 827379 . G A 4670.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=16.8734;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.78;SB=-2.238e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4670,510,0 chrXVI 827703 . C T 3519.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=21.20;SB=-1.921e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3519,378,0 chrXVI 827715 . A G 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.126;QD=19.49;ReadPosRankSum=1.709;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:2995,336,0 chrXVI 827752 . C T 2774 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=13.1960;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.25;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2807,306,0 chrXVI 827997 . G A 2746 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.12;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2779,306,0 chrXVI 828006 . T C 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=135;Dels=0.00;FS=7.782;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=0.761;QD=20.19;ReadPosRankSum=2.358;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2759,312,0 chrXVI 828087 . G A 3165 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3198,360,0 chrXVI 828223 . T A 3291.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=22.09;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3291,357,0 chrXVI 828256 . T G 3613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.0292;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-0.067;QD=23.31;ReadPosRankSum=1.710;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3613,408,0 chrXVI 828477 . A G 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.773;QD=21.04;ReadPosRankSum=1.710;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3346,372,0 chrXVI 828484 . G A 3320.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.5338;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.65;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,167:169:99:3320,360,0 chrXVI 828711 . T C 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=139;Dels=0.00;FS=3.172;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.164;QD=15.82;ReadPosRankSum=1.682;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2232,252,0 chrXVI 829002 . T C 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=189;Dels=0.00;FS=3.933;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.295;QD=20.24;ReadPosRankSum=1.714;SB=-1.854e+03 GT:AD:DP:GQ:PL 1/1:2,187:189:99:3825,432,0 chrXVI 829325 . G A 3072 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.82;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3105,351,0 chrXVI 829372 . G A 2997 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=19.72;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3030,333,0 chrXVI 829418 . A C 3038 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=19.73;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,151:154:99:3071,345,0 chrXVI 829624 . T C 1260 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=18.00;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1293,150,0 chrXVI 829698 . C T 153.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.988;DP=57;Dels=0.00;FS=4.287;HaplotypeScore=2.6576;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;MQRankSum=-1.206;QD=2.69;ReadPosRankSum=-3.147;SB=-6.506e+01 GT:AD:DP:GQ:PL 1/1:40,17:57:21:186,21,0 chrXVI 830727 . C T 375 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;QD=22.06;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:45:408,45,0 chrXVI 830857 . T C 500 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=22.2297;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.83;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:60:533,60,0 chrXVI 831154 . T C 4438.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=1.105;QD=22.30;ReadPosRankSum=1.593;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:1,198:199:99:4438,507,0 chrXVI 831160 . A G 3782.01 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.49;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,192:194:99:3782,420,0 chrXVI 831178 . A G 3029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=165;Dels=0.00;FS=17.463;HaplotypeScore=11.8228;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.114;QD=18.36;ReadPosRankSum=2.312;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:2,159:165:99:3062,357,0 chrXVI 831601 . G A 3822.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.2874;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.62;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3822,426,0 chrXVI 831899 . C T 4853.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.51;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4853,528,0 chrXVI 832026 . G A 5206.01 PASS AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.72;SB=-3.120e+03 GT:AD:DP:GQ:PL 1/1:0,263:264:99:5206,561,0 chrXVI 832034 . A C 4761.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=265;Dels=0.00;FS=6.757;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=1.144;QD=17.97;ReadPosRankSum=2.357;SB=-3.264e+03 GT:AD:DP:GQ:PL 1/1:2,263:265:99:4761,534,0 chrXVI 832084 . T C 2829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=203;Dels=0.00;FS=7.259;HaplotypeScore=24.0611;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.939;QD=13.94;ReadPosRankSum=2.376;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:2,201:203:99:2862,333,0 chrXVI 832297 . C T 5085.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=11.2006;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=20.84;SB=-2.971e+03 GT:AD:DP:GQ:PL 1/1:0,242:244:99:5085,564,0 chrXVI 832535 . T C 4344.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=8.4337;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=19.05;SB=-2.843e+03 GT:AD:DP:GQ:PL 1/1:0,227:228:99:4344,507,0 chrXVI 832547 . C T 4532.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=8.2723;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=20.98;SB=-2.749e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:4532,492,0 chrXVI 832610 . T C 4055.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=12.5866;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.59;SB=-2.339e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4055,453,0 chrXVI 832685 . A G 4260.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.78;SB=-2.461e+03 GT:AD:DP:GQ:PL 1/1:0,203:205:99:4260,480,0 chrXVI 832790 . G A 5603.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.96;SB=-3.017e+03 GT:AD:DP:GQ:PL 1/1:0,243:244:99:5603,612,0 chrXVI 832863 . A G 3915.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.8660;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=19.77;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:3915,444,0 chrXVI 833201 . A T 3960.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.25;SB=-2.242e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3960,429,0 chrXVI 833262 . T C 4694.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=216;Dels=0.00;FS=7.029;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.348;QD=21.73;ReadPosRankSum=2.427;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:2,213:216:99:4694,531,0 chrXVI 833312 . C T 5107.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-2.299e+03 GT:AD:DP:GQ:PL 1/1:0,226:227:99:5107,555,0 chrXVI 833382 . C T 3384.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.41;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3384,372,0 chrXVI 834128 . T A 2790 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.97;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2823,306,0 chrXVI 834185 . A G 3978.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3978,459,0 chrXVI 834327 . C T 4428.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.88;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4428,489,0 chrXVI 834353 . T C 4347.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=198;Dels=0.00;FS=2.541;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-1.015;QD=21.95;ReadPosRankSum=2.914;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:3,195:198:99:4347,492,0 chrXVI 834533 . A G 4308.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.203;QD=21.87;ReadPosRankSum=2.425;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:2,195:197:99:4308,501,0 chrXVI 834629 . G A 4506.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=15.0462;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.09;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,203:204:99:4506,492,0 chrXVI 834888 . C G 3864.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=13.7302;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.95;SB=-2.086e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3864,444,0 chrXVI 835242 . T G 2638 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.1647;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.77;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2671,297,0 chrXVI 835306 . C T 3282.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.33;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3282,354,0 chrXVI 835446 . A T 2638 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.37;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2671,291,0 chrXVI 835496 . C A 2396 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.96;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2429,270,0 chrXVI 835552 . C T 2848 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.14;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2881,315,0 chrXVI 835623 . T A 2605 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2638,288,0 chrXVI 836042 . C T 4071.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.81;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4071,435,0 chrXVI 836056 . G A 3962.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.9805;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.51;SB=-2.013e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3962,429,0 chrXVI 836340 . C T 3798.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.6152;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.34;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3798,414,0 chrXVI 836521 . C T 3098 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.95;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3131,342,0 chrXVI 836628 . A G 3107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.739;QD=20.71;ReadPosRankSum=1.709;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:3140,366,0 chrXVI 837009 . C T 3866.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.62;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3866,417,0 chrXVI 837416 . A C 2905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.2654;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=-0.319;QD=23.24;ReadPosRankSum=1.704;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2938,333,0 chrXVI 837483 . A G 1847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=0.242;QD=21.48;ReadPosRankSum=1.692;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1880,213,0 chrXVI 837622 . G A 1730 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=24.03;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1763,192,0 chrXVI 837674 . T A 1468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-1.132;QD=19.57;ReadPosRankSum=1.547;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1501,165,0 chrXVI 838043 . G A 708 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=2;QD=18.63;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:81:741,81,0 chrXVI 838104 . T C 1536 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.641;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=31.99;MQ0=2;MQRankSum=-0.456;QD=19.69;ReadPosRankSum=1.459;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1569,158,0 chrXVI 838274 . A G 40.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;MQRankSum=0.736;QD=6.83;ReadPosRankSum=0.736;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:1,5:6:9:73,9,0 chrXVI 839220 . T G 69.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=0;MQRankSum=-2.423;QD=0.76;ReadPosRankSum=2.396;SB=-1.545e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:12:102,12,0 chrXVI 839225 . G A 124.13 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.74;MQ0=0;QD=1.44;SB=-1.641e+02 GT:AD:DP:GQ:PL 1/1:0,82:86:18:157,18,0 chrXVI 839226 . T C 144.06 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.83;MQ0=0;QD=1.66;SB=-1.781e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:21:177,21,0 chrXVI 839265 . A G 1105 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=37.27;MQ0=0;QD=8.25;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1138,129,0 chrXVI 839292 . A G 1293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=3.239;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=0;MQRankSum=0.355;QD=8.24;ReadPosRankSum=1.688;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:1,155:157:99:1326,156,0 chrXVI 839313 . C T 1796 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.00;MQ0=0;QD=10.32;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,174:174:99:1829,201,0 chrXVI 839436 . A G 3979.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=185;Dels=0.00;FS=6.334;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;MQRankSum=0.701;QD=21.51;ReadPosRankSum=2.423;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:2,182:185:99:3979,456,0 chrXVI 839499 . T C 3223.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=148;Dels=0.00;FS=8.335;HaplotypeScore=9.3233;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=1.586;QD=21.78;ReadPosRankSum=2.416;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3256,372,0 chrXVI 839670 . A G 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.477;QD=19.69;ReadPosRankSum=1.704;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2435,279,0 chrXVI 840068 . A C 4572.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-1.524;QD=22.86;ReadPosRankSum=1.680;SB=-2.264e+03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:4572,539,0 chrXVI 840101 . G C 3482.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.98;SB=-2.165e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3482,390,0 chrXVI 840103 . G A 3476.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.46;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3476,378,0 chrXVI 840213 . T A 1919 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.0758;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=11.49;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:1952,222,0 chrXVI 840234 . C A 2096 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=12.12;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,171:173:99:2129,240,0 chrXVI 840263 . T A 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=170;Dels=0.00;FS=8.076;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=0.836;QD=14.34;ReadPosRankSum=2.319;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:2470,267,0 chrXVI 840482 . C G 2084 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.04;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2117,240,0 chrXVI 840759 . G A 2037 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.69;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2070,222,0 chrXVI 841449 . T C 4187.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.370;DP=198;Dels=0.00;FS=14.601;HaplotypeScore=14.2560;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.273;QD=21.15;ReadPosRankSum=3.415;SB=-2.039e+03 GT:AD:DP:GQ:PL 1/1:4,191:198:99:4187,471,0 chrXVI 841702 . A G 4408.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.1081;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.15;SB=-1.956e+03 GT:AD:DP:GQ:PL 1/1:0,199:199:99:4408,524,0 chrXVI 842051 . A G 3746.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.173;DP=171;Dels=0.00;FS=13.822;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-0.537;QD=21.91;ReadPosRankSum=3.296;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:4,167:171:99:3746,429,0 chrXVI 842073 . A G 2955 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=18.47;SB=-1.898e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2988,339,0 chrXVI 842075 . T C 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=158;Dels=0.00;FS=3.004;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=-1.532;QD=18.15;ReadPosRankSum=2.418;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:2900,336,0 chrXVI 842273 . G T 3580.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=21.70;SB=-1.934e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3580,399,0 chrXVI 842447 . T C 3125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=143;Dels=0.00;FS=4.363;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-1.683;QD=21.85;ReadPosRankSum=1.683;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:3158,357,0 chrXVI 842460 . G A 2850 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=20.65;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2883,321,0 chrXVI 842522 . A G 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.028;QD=20.15;ReadPosRankSum=1.676;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2511,279,0 chrXVI 842864 . A T 2262 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.59;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2295,246,0 chrXVI 843391 . T C 3419.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=177;Dels=0.00;FS=3.135;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.165;QD=19.32;ReadPosRankSum=1.693;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:1,176:177:99:3419,399,0 chrXVI 843595 . C T 3872.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.1917;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.75;SB=-1.968e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3872,420,0 chrXVI 843861 . C T 3362.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=23.19;SB=-1.929e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3362,354,0 chrXVI 843881 . T C 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=143;Dels=0.00;FS=6.176;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.459;QD=21.92;ReadPosRankSum=2.398;SB=-1.805e+03 GT:AD:DP:GQ:PL 1/1:2,140:143:99:3168,351,0 chrXVI 844001 . G A 2622 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=21.15;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2655,288,0 chrXVI 844011 . T C 2365 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=19.71;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2398,285,0 chrXVI 844046 . T C 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=107;Dels=0.00;FS=4.191;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=0.082;QD=18.62;ReadPosRankSum=1.699;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,104:107:99:2025,240,0 chrXVI 844058 . T C 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=4.403;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=0.261;QD=19.68;ReadPosRankSum=1.701;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2257,252,0 chrXVI 844244 . G A 2053 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;QD=22.56;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2086,228,0 chrXVI 844407 . G T 1009 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;DP=53;Dels=0.00;FS=24.898;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=5;MQRankSum=-1.235;QD=19.04;ReadPosRankSum=2.513;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:3,49:53:99:1042,114,0 chrXVI 844409 . A G 909 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.502;DP=52;Dels=0.00;FS=26.658;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.36;MQ0=5;MQRankSum=-2.459;QD=17.48;ReadPosRankSum=-2.894;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:6,44:52:47:942,47,0 chrXVI 844450 . G A 50.97 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.59;MQ0=10;QD=3.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,5:13:9:83,9,0 chrXVI 850463 . A C 1969 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=0;QD=24.01;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2002,234,0 chrXVI 850487 . T G 1255 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=20.24;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1288,150,0 chrXVI 850488 . G A 1315 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=21.21;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1348,150,0 chrXVI 850493 . G T 1483 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=24.31;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1516,171,0 chrXVI 852311 . T A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.90;MQ0=49;QD=0.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:6:43,6,0 chrXVI 852335 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.27;MQ0=40;QD=0.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:6:43,6,0 chrXVI 852367 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.91;MQ0=29;QD=0.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:6:43,6,0 chrXVI 856890 . A C 103.26 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=1.67;SB=-1.643e+02 GT:AD:DP:GQ:PL 1/1:0,59:62:15:136,15,0 chrXVI 857343 . A G 1771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=93;Dels=0.00;FS=3.617;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=-0.226;QD=19.04;ReadPosRankSum=1.694;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1804,210,0 chrXVI 857345 . T A 1765 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=19.40;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1798,195,0 chrXVI 857636 . C G 4826.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.89;SB=-1.832e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4826,534,0 chrXVI 858788 . T C 4052.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=187;Dels=0.00;FS=3.481;HaplotypeScore=17.6201;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.234;QD=21.67;ReadPosRankSum=1.695;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,184:187:99:4052,459,0 chrXVI 859224 . G A 4386.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=12.1437;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=19.15;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4386,501,0 chrXVI 859250 . A G 3987.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=8.4974;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.148;QD=17.88;ReadPosRankSum=1.654;SB=-2.629e+03 GT:AD:DP:GQ:PL 1/1:1,222:223:99:3987,468,0 chrXVI 859791 . T C 3460.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=161;Dels=0.00;FS=6.021;HaplotypeScore=12.8402;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.087;QD=21.49;ReadPosRankSum=1.667;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:1,159:161:99:3460,405,0 chrXVI 860149 . T A 1979 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=23.84;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2012,216,0 chrXVI 860207 . A G 2147 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.59;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2180,243,0 chrXVI 860239 . T A 2486 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.40;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2519,273,0 chrXVI 860259 . A G 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=4.421;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=1.150;QD=20.79;ReadPosRankSum=1.703;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2548,291,0 chrXVI 860334 . G A 2624 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=22.82;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2657,291,0 chrXVI 860359 . C T 2269 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=17.45;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2302,261,0 chrXVI 860362 . A T 2395 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=17.23;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2428,264,0 chrXVI 860479 . C T 3426.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.39;SB=-1.980e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3426,372,0 chrXVI 860540 . A G 3676.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=164;Dels=0.00;FS=3.861;HaplotypeScore=12.5358;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.988;QD=22.41;ReadPosRankSum=1.711;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,162:164:99:3676,411,0 chrXVI 861771 . A G 3816.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=160;Dels=0.00;FS=3.176;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.581;QD=23.85;ReadPosRankSum=1.710;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3816,423,0 chrXVI 862103 . A G 3517.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=176;Dels=0.00;FS=2.583;HaplotypeScore=4.1267;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.886;QD=19.98;ReadPosRankSum=0.719;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:2,174:176:99:3517,393,0 chrXVI 862110 . C T 3668.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.15;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3668,399,0 chrXVI 862439 . T C 3609.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3609,420,0 chrXVI 863288 . G A 4372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=193;Dels=0.00;FS=3.665;HaplotypeScore=2.3857;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=0.063;QD=22.65;ReadPosRankSum=0.853;SB=-2.142e+03 GT:AD:DP:GQ:PL 1/1:1,192:193:99:4372,474,0 chrXVI 863294 . A G 3956.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=197;Dels=0.00;FS=3.500;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-0.835;QD=20.08;ReadPosRankSum=1.591;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:1,196:197:99:3956,441,0 chrXVI 863372 . G A 5107.01 PASS AC=2;AF=1.00;AN=2;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.64;SB=-2.525e+03 GT:AD:DP:GQ:PL 1/1:0,235:236:99:5107,564,0 chrXVI 863753 . T C 3224.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=3.065;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.407;QD=20.15;ReadPosRankSum=1.689;SB=-1.837e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3257,381,0 chrXVI 863829 . C T 3457.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.35;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3457,372,0 chrXVI 863903 . A G 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.656;QD=22.86;ReadPosRankSum=1.706;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3073,357,0 chrXVI 864016 . T C 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=4.564;HaplotypeScore=99.8083;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=1.563;QD=18.33;ReadPosRankSum=1.648;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2288,267,0 chrXVI 864258 . A G 3688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=177;Dels=0.00;FS=9.108;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-0.733;QD=20.84;ReadPosRankSum=2.352;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:2,174:177:99:3688,438,0 chrXVI 864283 . C T 3815.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.68;SB=-1.942e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3815,420,0 chrXVI 864303 . G A 3974.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.6946;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.72;SB=-2.301e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3974,441,0 chrXVI 864330 . T C 4330.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.12;SB=-2.368e+03 GT:AD:DP:GQ:PL 1/1:0,205:205:99:4330,486,0 chrXVI 864677 . C T 2968 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.05;SB=-1.955e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3001,327,0 chrXVI 864798 . T C 3283.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.18;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3283,369,0 chrXVI 864815 . T C 2851 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.36;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2884,324,0 chrXVI 864893 . G A 3628.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3628,396,0 chrXVI 865226 . C T 3720.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.7308;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.28;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3720,408,0 chrXVI 865361 . C T 4173.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.12;SB=-2.021e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4173,450,0 chrXVI 865451 . C T 3566.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.15;SB=-1.916e+03 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3566,387,0 chrXVI 865498 . C T 4374.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-2.117e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:4374,477,0 chrXVI 866267 . C G 2854 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.4890;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.39;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2887,321,0 chrXVI 866381 . T C 3287.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.21;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3287,372,0 chrXVI 866682 . G A 3462.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.91;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3462,375,0 chrXVI 866895 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.75;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2831,309,0 chrXVI 867010 . G T 2741 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2774,303,0 chrXVI 868093 . A G 4151.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=185;Dels=0.00;FS=3.510;HaplotypeScore=14.6972;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.280;QD=22.44;ReadPosRankSum=1.694;SB=-1.994e+03 GT:AD:DP:GQ:PL 1/1:1,183:185:99:4151,468,0 chrXVI 868344 . T C 1085 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=11.7642;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=15.07;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1118,123,0 chrXVI 868671 . T C 2867 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.50;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2900,327,0 chrXVI 868942 . T C 2963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=141;Dels=0.00;FS=7.036;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-1.212;QD=21.01;ReadPosRankSum=2.415;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2996,348,0 chrXVI 868999 . A G 2712 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=17.84;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2745,312,0 chrXVI 869017 . G A 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.443;DP=152;Dels=0.01;FS=20.552;HaplotypeScore=7.3217;MLEAC=2;MLEAF=1.00;MQ=44.12;MQ0=0;MQRankSum=-1.491;QD=15.46;ReadPosRankSum=-2.281;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:6,145:151:99:2383,176,0 chrXVI 869020 . A G 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.258;DP=156;Dels=0.00;FS=13.244;HaplotypeScore=7.3217;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;MQRankSum=-0.967;QD=14.47;ReadPosRankSum=-1.190;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:7,149:156:99:2291,175,0 chrXVI 869053 . C T 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=3.286;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;MQRankSum=-1.306;QD=15.21;ReadPosRankSum=0.293;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2025,222,0 chrXVI 869068 . A G 1628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;MQRankSum=-1.679;QD=12.52;ReadPosRankSum=1.359;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:1661,186,0 chrXVI 869074 . A G 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;MQRankSum=-0.521;QD=13.08;ReadPosRankSum=1.648;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:1655,186,0 chrXVI 869155 . G A 358.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;DP=155;Dels=0.00;FS=9.045;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=51.16;MQ0=0;MQRankSum=-1.763;QD=2.31;ReadPosRankSum=-1.003;SB=-2.640e+02 GT:AD:DP:GQ:PL 0/1:102,52:155:99:388,0,1848 chrXVI 869167 . G A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.5630;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=18.91;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,172:175:99:3310,363,0 chrXVI 869176 . G A 3667.01 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=8.1951;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=19.00;SB=-2.230e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:3667,402,0 chrXVI 869246 . G C 643.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;DP=191;Dels=0.00;FS=16.240;HaplotypeScore=14.3423;MLEAC=1;MLEAF=0.500;MQ=53.32;MQ0=0;MQRankSum=3.715;QD=3.37;ReadPosRankSum=-1.409;SB=-3.000e+02 GT:AD:DP:GQ:PL 0/1:135,53:191:99:673,0,2379 chrXVI 869329 . T A 3029 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=24.04;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3062,330,0 chrXVI 869386 . A G 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=125;Dels=0.00;FS=3.045;HaplotypeScore=11.3751;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.128;QD=18.82;ReadPosRankSum=2.410;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2385,285,0 chrXVI 869483 . G A 3156 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.6209;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.49;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3189,363,0 chrXVI 869496 . A G 2908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.185;DP=147;Dels=0.00;FS=9.112;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-1.054;QD=19.78;ReadPosRankSum=3.375;SB=-1.754e+03 GT:AD:DP:GQ:PL 1/1:4,143:147:99:2941,330,0 chrXVI 869698 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.01;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:1,160:162:99:3566,399,0 chrXVI 869818 . G A 3847.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=11.3001;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.35;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3847,432,0 chrXVI 870043 . G A 3540.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.92;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3540,381,0 chrXVI 870338 . A G 4176.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=25.16;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4176,465,0 chrXVI 870491 . C T 3673.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.53;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3673,408,0 chrXVI 870525 . G C 3638.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=15.0903;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.91;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3638,420,0 chrXVI 870673 . C G 4352.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.67;SB=-2.378e+03 GT:AD:DP:GQ:PL 1/1:0,191:192:99:4352,510,0 chrXVI 870759 . G A 3990.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.80;SB=-2.112e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3990,435,0 chrXVI 870828 . A G 3372.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3372,384,0 chrXVI 871215 . A G 2974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.702;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-0.497;QD=23.05;ReadPosRankSum=1.705;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3007,336,0 chrXVI 871222 . G T 3086 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=22.53;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3119,342,0 chrXVI 871361 . T C 3881.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3881,438,0 chrXVI 871689 . A C 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.381;QD=22.31;ReadPosRankSum=1.710;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:1,158:160:99:3569,408,0 chrXVI 871860 . T C 2828 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.75;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2861,321,0 chrXVI 871965 . C A 2952 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.43;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2985,321,0 chrXVI 872166 . A G 2675 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.23;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2708,306,0 chrXVI 872172 . G A 2678 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.92;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2711,303,0 chrXVI 872245 . G A 3553.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.3082;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.01;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3553,387,0 chrXVI 872338 . T A 2921 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.34;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2954,318,0 chrXVI 872691 . A G 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=154;Dels=0.00;FS=13.176;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.249;QD=21.77;ReadPosRankSum=3.275;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:4,149:154:99:3353,384,0 chrXVI 872987 . G A 3684.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.24;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3684,396,0 chrXVI 873070 . T C 3280.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.01;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3280,378,0 chrXVI 873134 . T A 2685 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.4902;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.98;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2718,294,0 chrXVI 873246 . A G 3141 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.66;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3174,354,0 chrXVI 873343 . A G 2322 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.11;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2355,279,0 chrXVI 873345 . C T 2458 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.14;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2491,276,0 chrXVI 873415 . A T 1839 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=18.77;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1872,210,0 chrXVI 873426 . T C 1856 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.74;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1889,213,0 chrXVI 873450 . A C 2104 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.04;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2137,246,0 chrXVI 873499 . C T 2548 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.78;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2581,279,0 chrXVI 873684 . T C 1808 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.05;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1841,216,0 chrXVI 874128 . T C 3908.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.71;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3908,444,0 chrXVI 874146 . A C 4035.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=3.486;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.312;QD=22.05;ReadPosRankSum=1.694;SB=-2.220e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4035,450,0 chrXVI 874530 . C A 4147.01 PASS AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.60;SB=-2.258e+03 GT:AD:DP:GQ:PL 1/1:0,192:192:99:4147,462,0 chrXVI 874564 . T C 4193.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=28.4273;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.951;QD=20.55;ReadPosRankSum=1.681;SB=-2.428e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4193,471,0 chrXVI 874996 . A G 3560.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3560,408,0 chrXVI 875078 . T G 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=127;Dels=0.00;FS=3.295;HaplotypeScore=10.9501;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.082;QD=21.09;ReadPosRankSum=1.677;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2712,309,0 chrXVI 875206 . G A 2692 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2725,294,0 chrXVI 875380 . G A 3118 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.17;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3151,345,0 chrXVI 875784 . A G 4697.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=205;Dels=0.00;FS=14.250;HaplotypeScore=18.1138;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.808;QD=22.91;ReadPosRankSum=2.818;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:3,201:205:99:4697,528,0 chrXVI 876018 . C G 4403.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.13;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,197:199:99:4403,498,0 chrXVI 876034 . G C 3763.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.14;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3763,432,0 chrXVI 876278 . T A 215.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=21;Dels=0.05;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=-0.173;QD=10.24;ReadPosRankSum=1.561;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:1,19:20:27:248,27,0 chrXVI 876279 . T A 213.01 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=10.14;SB=-2.602e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:27:246,27,0 chrXVI 876647 . T C 3110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.536;QD=22.37;ReadPosRankSum=1.657;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3143,363,0 chrXVI 876811 . T C 4192.01 PASS AC=2;AF=1.00;AN=2;DP=216;Dels=0.01;FS=0.000;HaplotypeScore=24.1404;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=19.41;SB=-2.371e+03 GT:AD:DP:GQ:PL 1/1:0,212:214:99:4192,477,0 chrXVI 876853 . A G 3776.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.266;DP=198;Dels=0.00;FS=18.057;HaplotypeScore=15.1391;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.348;QD=19.07;ReadPosRankSum=3.381;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:4,194:198:99:3776,450,0 chrXVI 876931 . T C 4178.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=199;Dels=0.00;FS=3.019;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.241;QD=21.00;ReadPosRankSum=2.351;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4178,486,0 chrXVI 877205 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2968,333,0 chrXVI 877459 . G A 3173 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=13.7825;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.01;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3206,348,0 chrXVI 877603 . T A 2648 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2681,297,0 chrXVI 877710 . C T 2392 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.10;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2425,267,0 chrXVI 877869 . A T 2437 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=23.66;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2470,276,0 chrXVI 878117 . A G 5239.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=219;Dels=0.00;FS=5.303;HaplotypeScore=17.2415;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.631;QD=23.92;ReadPosRankSum=1.716;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:1,216:219:99:5239,582,0 chrXVI 878300 . T C 4832.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=229;Dels=0.00;FS=5.025;HaplotypeScore=8.9943;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.097;QD=21.10;ReadPosRankSum=1.717;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:1,228:229:99:4832,546,0 chrXVI 878378 . G A 2719 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=17.77;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2752,309,0 chrXVI 878600 . T A 1412 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=9.5723;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=15.69;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1445,168,0 chrXVI 878986 . T G 4346.01 PASS AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.95;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,198:198:99:4346,492,0 chrXVI 879007 . G T 4126.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=6.7047;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.30;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:4126,450,0 chrXVI 879327 . C T 3635.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.8953;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.60;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3635,405,0 chrXVI 879511 . C T 4108.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=5.8057;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.62;SB=-2.494e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4108,450,0 chrXVI 879520 . G A 3910.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.464;DP=196;Dels=0.00;FS=3.147;HaplotypeScore=4.3627;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.500;QD=19.95;ReadPosRankSum=0.714;SB=-2.439e+03 GT:AD:DP:GQ:PL 1/1:1,193:196:99:3910,405,0 chrXVI 879550 . C T 3785.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=19.21;SB=-2.497e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3785,414,0 chrXVI 879742 . T C 4902.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=9.3091;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-0.712;QD=22.69;ReadPosRankSum=1.700;SB=-2.314e+03 GT:AD:DP:GQ:PL 1/1:1,213:216:99:4902,549,0 chrXVI 879779 . A G 4459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=199;Dels=0.00;FS=7.272;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.750;QD=22.41;ReadPosRankSum=2.400;SB=-2.151e+03 GT:AD:DP:GQ:PL 1/1:2,197:199:99:4459,498,0 chrXVI 880130 . C G 2637 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.76;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2670,309,0 chrXVI 880193 . A G 2951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=3.082;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=0.369;QD=24.19;ReadPosRankSum=1.704;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2984,333,0 chrXVI 880238 . T G 2522 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=5.0485;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=24.02;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2555,285,0 chrXVI 880373 . A C 1714 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.98;MQ0=0;QD=20.40;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1747,198,0 chrXVI 880381 . A G 1619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=2.973;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.86;MQ0=0;MQRankSum=-0.778;QD=19.27;ReadPosRankSum=2.391;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1652,189,0 chrXVI 880403 . G A 1717 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;QD=22.01;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1750,186,0 chrXVI 880408 . C T 1567 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=21.47;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1600,174,0 chrXVI 880425 . T G 1515 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;QD=19.18;SB=-6.801e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1548,180,0 chrXVI 880514 . A T 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;MQRankSum=-0.866;QD=17.46;ReadPosRankSum=1.705;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2303,264,0 chrXVI 880557 . T A 1631 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;QD=18.33;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1664,183,0 chrXVI 880606 . G A 309 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.68;MQ0=0;QD=6.06;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:39:342,39,0 chrXVI 880619 . C A 189.01 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.29;MQ0=0;QD=3.10;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:27:222,27,0 chrXVI 880628 . C T 149.06 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.06;MQ0=0;QD=2.16;SB=-9.307e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:21:182,21,0 chrXVI 880631 . G T 150.06 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=16.26;MQ0=0;QD=2.11;SB=-7.107e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:21:183,21,0 chrXVI 880641 . A C 88.26 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=20.91;MQ0=0;QD=1.04;SB=-7.327e+01 GT:AD:DP:GQ:PL 1/1:0,84:85:15:121,15,0 chrXVI 880688 . T C 1061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.957;DP=116;Dels=0.00;FS=2.426;HaplotypeScore=5.0242;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;MQRankSum=-1.026;QD=9.15;ReadPosRankSum=1.357;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:3,113:116:99:1094,103,0 chrXVI 880741 . G A 1942 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.62;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1975,213,0 chrXVI 880820 . A G 1964 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=18.36;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1997,225,0 chrXVI 880865 . A G 2076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;MQRankSum=0.357;QD=15.61;ReadPosRankSum=1.706;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2109,249,0 chrXVI 880901 . T C 2269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.928;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;MQRankSum=-0.082;QD=18.01;ReadPosRankSum=1.705;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2302,270,0 chrXVI 880941 . A T 3153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=144;Dels=0.00;FS=3.297;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=0.086;QD=21.90;ReadPosRankSum=1.609;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3186,354,0 chrXVI 881145 . T C 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=152;Dels=0.00;FS=3.623;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.615;QD=22.93;ReadPosRankSum=1.709;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3485,390,0 chrXVI 881189 . C T 3967.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.02;FS=0.000;HaplotypeScore=23.4741;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.34;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3967,432,0 chrXVI 881280 . A T 2224 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.02;FS=0.000;HaplotypeScore=29.4265;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.38;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2257,252,0 chrXVI 881329 . G A 3183 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.23;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3216,348,0 chrXVI 881367 . A C 2772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.430;QD=21.83;ReadPosRankSum=1.622;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2805,315,0 chrXVI 881834 . C A 4965.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=22.1337;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.07;SB=-2.649e+03 GT:AD:DP:GQ:PL 1/1:0,223:225:99:4965,543,0 chrXVI 881976 . G A 5146.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=10.2725;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.16;SB=-2.668e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5146,558,0 chrXVI 882057 . T A 6685.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=280;Dels=0.00;FS=2.965;HaplotypeScore=21.6570;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=0.928;QD=23.88;ReadPosRankSum=2.388;SB=-3.156e+03 GT:AD:DP:GQ:PL 1/1:2,278:280:99:6685,750,0 chrXVI 882087 . A G 6588.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=297;Dels=0.00;FS=3.115;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-0.464;QD=22.18;ReadPosRankSum=1.720;SB=-3.695e+03 GT:AD:DP:GQ:PL 1/1:1,294:297:99:6588,738,0 chrXVI 882103 . T A 5937.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=14.7310;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.366;QD=20.90;ReadPosRankSum=1.620;SB=-3.502e+03 GT:AD:DP:GQ:PL 1/1:1,281:284:99:5937,648,0 chrXVI 882225 . A G 5219.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=222;Dels=0.00;FS=2.721;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.658;QD=23.51;ReadPosRankSum=2.361;SB=-2.124e+03 GT:AD:DP:GQ:PL 1/1:2,220:222:99:5219,591,0 chrXVI 882292 . A C 5208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=235;Dels=0.01;FS=0.000;HaplotypeScore=14.1422;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-1.227;QD=22.16;ReadPosRankSum=2.428;SB=-1.897e+03 GT:AD:DP:GQ:PL 1/1:2,231:233:99:5208,594,0 chrXVI 882337 . C A 5284.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=14.7695;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=23.28;SB=-2.597e+03 GT:AD:DP:GQ:PL 1/1:0,226:226:99:5284,576,0 chrXVI 882493 . A G 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.625;DP=139;Dels=0.00;FS=11.720;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=0.017;QD=18.35;ReadPosRankSum=3.738;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:5,134:139:99:2584,309,0 chrXVI 882509 . T A 2621 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=19.27;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2654,294,0 chrXVI 882555 . T C 2397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=156;Dels=0.00;FS=11.267;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=35.97;MQ0=0;MQRankSum=0.417;QD=15.37;ReadPosRankSum=2.387;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:2,154:156:99:2430,291,0 chrXVI 882567 . A G 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.352;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=30.70;MQ0=0;MQRankSum=-3.232;QD=14.97;ReadPosRankSum=3.161;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:4,143:147:99:2233,252,0 chrXVI 882576 . C T 2133 SnpCluster AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=14.92;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2166,234,0 chrXVI 882583 . T C 2064 SnpCluster AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=14.74;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2097,237,0 chrXVI 882586 . C A 2138 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=15.49;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2171,237,0 chrXVI 882590 . C T 2117 SnpCluster AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=16.28;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2150,234,0 chrXVI 882596 . A G 1927 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=133;Dels=0.00;FS=2.412;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;MQRankSum=0.280;QD=14.49;ReadPosRankSum=2.947;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:3,130:133:99:1960,225,0 chrXVI 882608 . T C 1741 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;QD=14.88;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:1774,213,0 chrXVI 882609 . C G 1830 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;QD=15.64;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1863,216,0 chrXVI 882632 . A C 1886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=0;MQRankSum=0.275;QD=14.85;ReadPosRankSum=1.705;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:1919,213,0 chrXVI 882654 . C T 2270 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=0;QD=18.31;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2303,252,0 chrXVI 882679 . T C 2922 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;QD=20.72;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2955,336,0 chrXVI 882721 . T C 2909 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.2434;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;QD=22.04;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2942,333,0 chrXVI 882746 . C T 2588 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.90;MQ0=0;QD=20.87;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2621,294,0 chrXVI 882768 . G T 1875 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;QD=16.03;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1908,213,0 chrXVI 882787 . G A 2739 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.5521;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=17.67;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,153:155:99:2772,306,0 chrXVI 882893 . C T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=20.97;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3606,393,0 chrXVI 882903 . T G 2872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;MQRankSum=-0.205;QD=18.89;ReadPosRankSum=1.709;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2905,336,0 chrXVI 882906 . T C 2804 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=18.95;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2837,321,0 chrXVI 882932 . T A 2861 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=18.58;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2894,318,0 chrXVI 882949 . G A 2741 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=19.03;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2774,300,0 chrXVI 883032 . A G 3873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=10.2579;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=0.725;QD=20.60;ReadPosRankSum=2.384;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:2,186:188:99:3873,438,0 chrXVI 883117 . G A 3047 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=21.61;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3080,342,0 chrXVI 883313 . C T 3738.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.27;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3738,408,0 chrXVI 883526 . C G 3636.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.90;SB=-2.066e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3636,417,0 chrXVI 883797 . G A 1896 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1929,210,0 chrXVI 884015 . G C 2401 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.06;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2434,270,0 chrXVI 884178 . A G 2013 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0885;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.68;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2046,228,0 chrXVI 884221 . A G 2905 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.70;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2938,333,0 chrXVI 884246 . T C 2668 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.76;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2701,309,0 chrXVI 884263 . G A 2696 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.12;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2729,291,0 chrXVI 884616 . G C 2550 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2583,294,0 chrXVI 884655 . T G 2493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=118;Dels=0.00;FS=4.412;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.388;QD=21.13;ReadPosRankSum=1.702;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2526,291,0 chrXVI 884709 . C T 1866 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.28;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1899,204,0 chrXVI 884724 . G A 1655 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.47;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1688,186,0 chrXVI 884742 . A G 1375 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.86;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1408,171,0 chrXVI 884832 . G A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.62;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3496,384,0 chrXVI 884895 . A G 3196 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.03;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3229,360,0 chrXVI 885178 . A G 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=160;Dels=0.00;FS=8.138;HaplotypeScore=5.7564;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=-1.359;QD=21.04;ReadPosRankSum=2.357;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3367,384,0 chrXVI 885190 . A G 3384.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=167;Dels=0.00;FS=4.303;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=0.674;QD=20.26;ReadPosRankSum=1.628;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3384,375,0 chrXVI 885210 . A C 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=4.161;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=0.468;QD=19.10;ReadPosRankSum=1.710;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:3070,345,0 chrXVI 885444 . T G 3620.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=20.80;SB=-2.072e+03 GT:AD:DP:GQ:PL 1/1:0,172:174:99:3620,423,0 chrXVI 885455 . A C 3723.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=174;Dels=0.00;FS=6.779;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=0.727;QD=21.40;ReadPosRankSum=2.379;SB=-1.989e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3723,417,0 chrXVI 885741 . T C 3567.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=20.27;SB=-2.177e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3567,414,0 chrXVI 885753 . G C 3332.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.88;MQ0=0;QD=19.15;SB=-2.131e+03 GT:AD:DP:GQ:PL 1/1:0,173:174:99:3332,378,0 chrXVI 885762 . T A 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=174;Dels=0.00;FS=6.147;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;MQRankSum=-0.953;QD=17.67;ReadPosRankSum=2.379;SB=-2.266e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3107,342,0 chrXVI 885768 . G A 3175 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=18.04;SB=-2.342e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3208,351,0 chrXVI 885822 . G A 3210.99 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=19.70;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3244,354,0 chrXVI 885828 . A G 2846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.787;DP=160;Dels=0.00;FS=8.158;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=0.665;QD=17.79;ReadPosRankSum=2.117;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:4,155:160:99:2879,308,0 chrXVI 885864 . G A 3677.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.15;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3677,408,0 chrXVI 885942 . T C 3210.99 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.781;DP=154;Dels=0.00;FS=16.389;HaplotypeScore=6.0080;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;MQRankSum=-1.257;QD=20.85;ReadPosRankSum=3.740;SB=-1.788e+03 GT:AD:DP:GQ:PL 1/1:5,148:154:99:3244,369,0 chrXVI 885957 . G A 2998 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=18.97;SB=-2.036e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3031,333,0 chrXVI 885979 . T A 3564.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;MQRankSum=0.245;QD=19.91;ReadPosRankSum=1.693;SB=-2.191e+03 GT:AD:DP:GQ:PL 1/1:1,178:179:99:3564,396,0 chrXVI 886125 . A C 2803 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.31;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2836,336,0 chrXVI 886141 . G A 2896 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9234;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.84;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2929,324,0 chrXVI 886188 . A G 3738.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=21.86;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3738,420,0 chrXVI 886611 . A G 3372.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.42;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3372,387,0 chrXVI 886734 . G A 4926.01 PASS AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.19;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,222:222:99:4926,531,0 chrXVI 886776 . A G 4086.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.367;DP=189;Dels=0.00;FS=5.244;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=2.222;QD=21.62;ReadPosRankSum=3.321;SB=-1.762e+03 GT:AD:DP:GQ:PL 1/1:4,185:189:99:4086,453,0 chrXVI 886812 . C T 4254.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.38;SB=-2.415e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4254,474,0 chrXVI 887016 . G A 3345.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.60;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3345,363,0 chrXVI 887070 . T C 3190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=5.283;HaplotypeScore=10.7396;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.748;QD=19.69;ReadPosRankSum=1.668;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3223,372,0 chrXVI 887343 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.32;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2667,300,0 chrXVI 887385 . T C 2760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=144;Dels=0.00;FS=7.647;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=-0.487;QD=19.17;ReadPosRankSum=2.415;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2793,321,0 chrXVI 887394 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.04;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2879,315,0 chrXVI 887495 . G A 3217.04 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=15.1976;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.88;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3250,354,0 chrXVI 887622 . C T 2979 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=8.9764;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.13;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3012,327,0 chrXVI 888091 . G A 3358.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.81;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3358,378,0 chrXVI 888159 . C G 3989.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.1887;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.54;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3989,453,0 chrXVI 888536 . G A 4372.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.2620;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.89;SB=-2.506e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4372,471,0 chrXVI 888547 . A G 3961.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=9.0384;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.21;SB=-2.129e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3961,456,0 chrXVI 888868 . A T 3625.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.381;DP=161;Dels=0.00;FS=3.353;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.417;QD=22.52;ReadPosRankSum=1.710;SB=-1.873e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3625,399,0 chrXVI 889084 . A C 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=4.229;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.787;QD=22.57;ReadPosRankSum=1.684;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3260,369,0 chrXVI 889176 . C T 2653 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=18.17;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2686,291,0 chrXVI 889177 . A C 2444 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=16.51;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,144:148:99:2477,291,0 chrXVI 889287 . T C 4662.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.1860;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.48;SB=-2.518e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4662,534,0 chrXVI 889681 . A G 3566.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=165;Dels=0.00;FS=6.320;HaplotypeScore=15.8269;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.837;QD=21.61;ReadPosRankSum=2.419;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:2,161:165:99:3566,396,0 chrXVI 889879 . T C 3583.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.68;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3583,414,0 chrXVI 889936 . G A 3275.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3275,357,0 chrXVI 890080 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.80;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2974,327,0 chrXVI 890346 . T A 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=129;Dels=0.00;FS=2.950;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-0.600;QD=22.05;ReadPosRankSum=2.373;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2877,318,0 chrXVI 890549 . A G 3157 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.0130;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=21.92;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3190,354,0 chrXVI 890560 . A C 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=137;Dels=0.00;FS=6.647;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=-0.314;QD=19.97;ReadPosRankSum=2.378;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2769,318,0 chrXVI 890563 . T C 2781 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=20.30;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2814,321,0 chrXVI 890693 . T G 3721.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=155;Dels=0.00;FS=3.032;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.104;QD=24.01;ReadPosRankSum=2.418;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:2,152:155:99:3721,417,0 chrXVI 891130 . A C 3391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=153;Dels=0.00;FS=8.300;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.336;QD=22.16;ReadPosRankSum=2.417;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:2,148:153:99:3391,378,0 chrXVI 891619 . A G 5699.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=244;Dels=0.00;FS=6.641;HaplotypeScore=24.0104;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.775;QD=23.36;ReadPosRankSum=2.429;SB=-2.604e+03 GT:AD:DP:GQ:PL 1/1:2,238:244:99:5699,642,0 chrXVI 891701 . G A 5182.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=10.2665;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=22.63;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,227:229:99:5182,561,0 chrXVI 892169 . T C 3522.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.909e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3522,390,0 chrXVI 892211 . A C 4163.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.5302;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.39;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4163,468,0 chrXVI 892306 . A G 4935.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=210;Dels=0.00;FS=10.978;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.134;QD=23.50;ReadPosRankSum=2.919;SB=-2.213e+03 GT:AD:DP:GQ:PL 1/1:3,207:210:99:4935,561,0 chrXVI 892406 . C T 4065.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.79;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4065,444,0 chrXVI 892576 . T G 2876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=139;Dels=0.00;FS=4.378;HaplotypeScore=10.1109;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.468;QD=20.69;ReadPosRankSum=1.580;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2909,330,0 chrXVI 892709 . T A 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.587;QD=21.88;ReadPosRankSum=1.616;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2681,294,0 chrXVI 892994 . C T 4543.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.49;SB=-2.599e+03 GT:AD:DP:GQ:PL 1/1:0,199:202:99:4543,498,0 chrXVI 893092 . G A 5019.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=14.5643;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.72;SB=-2.296e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:5019,543,0 chrXVI 893394 . G A 6019.01 PASS AC=2;AF=1.00;AN=2;DP=277;Dels=0.00;FS=0.000;HaplotypeScore=20.3963;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.73;SB=-2.914e+03 GT:AD:DP:GQ:PL 1/1:0,276:277:99:6019,649,0 chrXVI 893447 . C G 5648.01 PASS AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=23.3746;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.54;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,270:275:99:5648,639,0 chrXVI 893609 . G A 3097 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.61;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3130,339,0 chrXVI 893672 . T C 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=112;Dels=0.00;FS=12.058;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=0.613;QD=18.69;ReadPosRankSum=2.865;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2126,246,0 chrXVI 893675 . T C 2061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=3.924;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;MQRankSum=-1.135;QD=17.77;ReadPosRankSum=1.672;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2094,237,0 chrXVI 893806 . T G 2058 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=21.22;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2091,240,0 chrXVI 893821 . C T 1837 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=10.4767;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=19.34;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1870,204,0 chrXVI 893822 . C T 1859 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=9.6880;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=19.57;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1892,207,0 chrXVI 893913 . C T 1933 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=21.48;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1966,213,0 chrXVI 893914 . T C 1849 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=20.78;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1882,213,0 chrXVI 894005 . T C 2026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=95;Dels=0.00;FS=6.349;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=0.272;QD=21.33;ReadPosRankSum=2.398;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2059,225,0 chrXVI 894042 . G T 2342 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.89;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2375,258,0 chrXVI 894150 . C T 2224 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.68;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2257,240,0 chrXVI 894151 . C T 2236 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=19.11;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2269,249,0 chrXVI 894337 . T G 3813.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.97;SB=-2.024e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3813,435,0 chrXVI 894511 . T C 3441.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=3.039;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.952;QD=22.79;ReadPosRankSum=1.686;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3441,402,0 chrXVI 894844 . T A 4349.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.30;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4349,477,0 chrXVI 895022 . C G 3546.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.36;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,163:166:99:3546,420,0 chrXVI 895084 . C T 3902.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.24;SB=-2.000e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3902,423,0 chrXVI 895201 . G A 3347.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.59;SB=-1.871e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3347,375,0 chrXVI 895259 . T C 4089.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.841;QD=23.23;ReadPosRankSum=1.712;SB=-1.853e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:4089,468,0 chrXVI 895702 . C T 4400.01 PASS AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=12.0017;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.05;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:0,209:209:99:4400,489,0 chrXVI 895777 . T C 3367.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=152;Dels=0.00;FS=4.184;HaplotypeScore=5.5294;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-1.345;QD=22.15;ReadPosRankSum=1.664;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3367,375,0 chrXVI 895801 . T C 3148 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.71;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3181,354,0 chrXVI 895917 . T C 4234.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=182;Dels=0.00;FS=2.975;HaplotypeScore=7.1105;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.871;QD=23.26;ReadPosRankSum=2.422;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:2,177:182:99:4234,477,0 chrXVI 896116 . C T 4234.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=18.2140;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.40;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,187:189:99:4234,462,0 chrXVI 896257 . G A 2710 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.36;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2743,312,0 chrXVI 896267 . A G 2739 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3158;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.29;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2772,321,0 chrXVI 896434 . G A 3750.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=12.2080;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.58;SB=-1.991e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3750,414,0 chrXVI 896467 . C T 3594.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=22.46;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3594,396,0 chrXVI 896539 . T C 3983.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.756;DP=177;Dels=0.00;FS=6.001;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=1.028;QD=22.50;ReadPosRankSum=2.960;SB=-2.103e+03 GT:AD:DP:GQ:PL 1/1:3,174:177:99:3983,450,0 chrXVI 896713 . C A 3862.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=185;Dels=0.00;FS=3.034;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=-1.657;QD=20.88;ReadPosRankSum=1.283;SB=-2.476e+03 GT:AD:DP:GQ:PL 1/1:1,184:185:99:3862,420,0 chrXVI 896714 . T A 3844.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=20.89;SB=-2.511e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3844,417,0 chrXVI 896727 . G A 3719.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=20.43;SB=-2.331e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:3719,399,0 chrXVI 896834 . A G 3778.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=180;Dels=0.00;FS=2.930;HaplotypeScore=11.7659;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-0.321;QD=20.99;ReadPosRankSum=2.368;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3778,447,0 chrXVI 896848 . C T 3513.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=20.79;SB=-2.078e+03 GT:AD:DP:GQ:PL 1/1:0,168:169:99:3513,393,0 chrXVI 896854 . G A 3600.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=21.69;SB=-2.156e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3600,384,0 chrXVI 897004 . G A 1612 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=17.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1645,180,0 chrXVI 897538 . T C 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.014;QD=22.60;ReadPosRankSum=1.705;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2926,333,0 chrXVI 897742 . T C 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=136;Dels=0.00;FS=3.563;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.034;QD=21.42;ReadPosRankSum=1.655;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,133:136:99:2946,339,0 chrXVI 898021 . A G 5067.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=16.1766;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.35;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,215:217:99:5067,579,0 chrXVI 898057 . A C 5706.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=15.1386;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.55;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,250:253:99:5706,654,0 chrXVI 898123 . A G 5276.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=13.5899;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.85;SB=-2.982e+03 GT:AD:DP:GQ:PL 1/1:0,251:253:99:5276,620,0 chrXVI 898150 . C G 5720.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=15.9733;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.72;SB=-3.356e+03 GT:AD:DP:GQ:PL 1/1:0,274:276:99:5720,666,0 chrXVI 898411 . C T 6496.01 PASS AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=18.2929;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.48;SB=-3.496e+03 GT:AD:DP:GQ:PL 1/1:0,286:289:99:6496,709,0 chrXVI 898573 . A C 5286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=255;Dels=0.00;FS=0.000;HaplotypeScore=15.9526;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.958;QD=20.73;ReadPosRankSum=1.664;SB=-3.069e+03 GT:AD:DP:GQ:PL 1/1:1,254:255:99:5286,609,0 chrXVI 898897 . C T 4568.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=12.3426;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.43;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:4568,492,0 chrXVI 899569 . C G 7119.01 PASS AC=2;AF=1.00;AN=2;DP=332;Dels=0.00;FS=0.000;HaplotypeScore=19.0716;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.44;SB=-3.766e+03 GT:AD:DP:GQ:PL 1/1:0,329:332:99:7119,830,0 chrXVI 899602 . A G 6238.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.395;DP=299;Dels=0.00;FS=9.964;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.139;QD=20.86;ReadPosRankSum=4.501;SB=-2.706e+03 GT:AD:DP:GQ:PL 1/1:7,292:299:99:6238,711,0 chrXVI 899871 . A C 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=179;Dels=0.00;FS=15.359;HaplotypeScore=18.6797;MLEAC=2;MLEAF=1.00;MQ=60.59;MQ0=0;MQRankSum=1.772;QD=19.04;ReadPosRankSum=2.591;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:4,173:179:99:3409,370,0 chrXVI 899969 . G T 5464.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=25.53;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:5464,589,0 chrXVI 899995 . G T 5561.01 PASS AC=2;AF=1.00;AN=2;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.98;SB=-2.420e+03 GT:AD:DP:GQ:PL 1/1:0,253:253:99:5561,604,0 chrXVI 900008 . G A 5544.01 PASS AC=2;AF=1.00;AN=2;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=17.1657;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.08;SB=-2.520e+03 GT:AD:DP:GQ:PL 1/1:0,261:263:99:5544,606,0 chrXVI 900148 . C A 10980.01 filter AC=2;AF=1.00;AN=2;DP=460;Dels=0.00;FS=0.000;HaplotypeScore=23.7441;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.87;SB=-3.839e+03 GT:AD:DP:GQ:PL 1/1:0,460:460:99:10980,1201,0 chrXVI 900472 . C T 4718.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=14.2814;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.34;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,240:244:99:4718,513,0 chrXVI 900592 . A C 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=155;Dels=0.00;FS=6.826;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.345;QD=19.85;ReadPosRankSum=2.417;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:2,151:155:99:3109,348,0 chrXVI 900602 . C T 3058 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.52;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3091,333,0 chrXVI 900811 . A G 7459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.346;DP=326;Dels=0.00;FS=0.000;HaplotypeScore=8.2035;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=1.657;QD=22.88;ReadPosRankSum=-1.528;SB=-2.442e+03 GT:AD:DP:GQ:PL 1/1:1,322:326:99:7459,815,0 chrXVI 900827 . T C 7525.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.692;DP=346;Dels=0.00;FS=4.856;HaplotypeScore=32.0444;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=2.365;QD=21.75;ReadPosRankSum=3.742;SB=-2.606e+03 GT:AD:DP:GQ:PL 1/1:5,340:346:99:7525,858,0 chrXVI 901021 . G A 10470.01 filter AC=2;AF=1.00;AN=2;DP=471;Dels=0.00;FS=0.000;HaplotypeScore=25.0269;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.23;SB=-6.072e+03 GT:AD:DP:GQ:PL 1/1:0,471:471:99:10470,1144,0 chrXVI 901087 . T C 7824.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=443;Dels=0.00;FS=5.272;HaplotypeScore=24.4866;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;MQRankSum=-1.025;QD=17.66;ReadPosRankSum=1.708;SB=-3.289e+03 GT:AD:DP:GQ:PL 1/1:1,440:443:99:7824,876,0 chrXVI 901096 . T C 7353.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=428;Dels=0.00;FS=15.707;HaplotypeScore=7.4566;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;MQRankSum=-0.196;QD=17.18;ReadPosRankSum=2.884;SB=-3.153e+03 GT:AD:DP:GQ:PL 1/1:3,424:428:99:7353,825,0 chrXVI 901105 . T C 7126.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=449;Dels=0.00;FS=0.000;HaplotypeScore=6.8900;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=-0.197;QD=15.87;ReadPosRankSum=1.408;SB=-3.242e+03 GT:AD:DP:GQ:PL 1/1:1,448:449:99:7126,833,0 chrXVI 901126 . C A 7625.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=459;Dels=0.00;FS=0.000;HaplotypeScore=12.2020;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-1.153;QD=16.61;ReadPosRankSum=1.702;SB=-3.240e+03 GT:AD:DP:GQ:PL 1/1:1,455:459:99:7625,840,0 chrXVI 901264 . A G 5496.01 PASS AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.47;SB=-2.976e+03 GT:AD:DP:GQ:PL 1/1:0,256:256:99:5496,615,0 chrXVI 901342 . A G 5208.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=245;Dels=0.00;FS=9.246;HaplotypeScore=10.5774;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-2.439;QD=21.26;ReadPosRankSum=2.971;SB=-2.921e+03 GT:AD:DP:GQ:PL 1/1:3,242:245:99:5208,579,0 chrXVI 901564 . G T 3975.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.5149;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.92;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3975,432,0 chrXVI 901586 . A T 3415.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=14.8758;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.09;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3415,381,0 chrXVI 901666 . T C 2957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.1203;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-1.355;QD=20.12;ReadPosRankSum=1.614;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:2990,336,0 chrXVI 901669 . G C 2853 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.0937;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.81;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:2886,339,0 chrXVI 901708 . A C 1820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=0.346;QD=16.40;ReadPosRankSum=1.701;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1853,207,0 chrXVI 901725 . C T 1951 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=17.27;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1984,213,0 chrXVI 901786 . T C 2760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=148;Dels=0.00;FS=3.314;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.702;QD=18.65;ReadPosRankSum=1.638;SB=-1.670e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:2793,327,0 chrXVI 902329 . C T 5645.01 PASS AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-3.004e+03 GT:AD:DP:GQ:PL 1/1:0,244:244:99:5645,607,0 chrXVI 902430 . C T 4736.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=14.7265;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.77;SB=-2.421e+03 GT:AD:DP:GQ:PL 1/1:0,207:208:99:4736,519,0 chrXVI 902520 . C A 3965.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=166;Dels=0.00;FS=4.348;HaplotypeScore=11.2348;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.981;QD=23.89;ReadPosRankSum=1.607;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:3965,435,0 chrXVI 902643 . T C 4146.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=9.7058;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.05;SB=-1.910e+03 GT:AD:DP:GQ:PL 1/1:0,185:188:99:4146,471,0 chrXVI 902931 . T C 4919.01 PASS AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.76;SB=-2.517e+03 GT:AD:DP:GQ:PL 1/1:0,207:207:99:4919,555,0 chrXVI 902997 . A G 4889.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=12.2338;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.95;SB=-2.622e+03 GT:AD:DP:GQ:PL 1/1:0,212:213:99:4889,543,0 chrXVI 903072 . A C 4461.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.87;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,204:204:99:4461,507,0 chrXVI 903111 . T A 4562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=0.602;QD=19.83;ReadPosRankSum=1.672;SB=-2.808e+03 GT:AD:DP:GQ:PL 1/1:1,229:230:99:4562,495,0 chrXVI 903117 . C T 4456.01 PASS AC=2;AF=1.00;AN=2;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=19.46;SB=-2.945e+03 GT:AD:DP:GQ:PL 1/1:0,229:229:99:4456,486,0 chrXVI 903146 . G A 3328.01 PASS AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=2.6510;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=15.13;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:0,220:220:99:3328,363,0 chrXVI 903156 . G T 3430.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=8.7985;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=15.11;SB=-2.924e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:3430,378,0 chrXVI 903285 . T C 5340.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.722;DP=248;Dels=0.00;FS=12.217;HaplotypeScore=20.4510;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.561;QD=21.53;ReadPosRankSum=3.817;SB=-2.941e+03 GT:AD:DP:GQ:PL 1/1:5,243:248:99:5340,627,0 chrXVI 903372 . T C 5500.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=245;Dels=0.00;FS=4.024;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.262;QD=22.45;ReadPosRankSum=1.704;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:1,244:245:99:5500,650,0 chrXVI 903396 . T C 6003.01 PASS AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=23.09;SB=-2.397e+03 GT:AD:DP:GQ:PL 1/1:0,258:260:99:6003,675,0 chrXVI 903807 . G A 3905.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-2.185e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3905,423,0 chrXVI 904203 . T C 3409.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=183;Dels=0.00;FS=3.286;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.184;QD=18.63;ReadPosRankSum=1.713;SB=-2.061e+03 GT:AD:DP:GQ:PL 1/1:1,178:183:99:3409,402,0 chrXVI 904215 . G T 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=8.2342;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-0.764;QD=18.95;ReadPosRankSum=1.043;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:1,185:190:99:3600,390,0 chrXVI 904363 . G A 3497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=149;Dels=0.00;FS=3.285;HaplotypeScore=7.8065;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.214;QD=23.47;ReadPosRankSum=-0.507;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3497,363,0 chrXVI 904458 . C T 3691.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.64;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3691,396,0 chrXVI 904518 . C T 3212.98 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.71;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3246,363,0 chrXVI 904870 . G A 3897.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.48;SB=-2.105e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3897,420,0 chrXVI 904893 . C T 3647.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.08;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,166:172:99:3647,399,0 chrXVI 905582 . G A 4781.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.9223;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.79;SB=-2.634e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4781,519,0 chrXVI 905754 . T C 3802.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.997e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3802,441,0 chrXVI 905910 . A C 3078 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.1358;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3111,360,0 chrXVI 905946 . G A 3718.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.68;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3718,408,0 chrXVI 906228 . C A 4465.01 PASS AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=8.8959;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.10;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:0,201:202:99:4465,501,0 chrXVI 906255 . T A 4056.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.01;FS=0.000;HaplotypeScore=3.6202;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.16;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4056,441,0 chrXVI 906363 . C T 4459.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=14.1320;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.75;SB=-1.935e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:4459,489,0 chrXVI 906509 . T C 2355 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.55;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2388,267,0 chrXVI 906513 . A G 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.161;QD=23.88;ReadPosRankSum=1.696;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2349,261,0 chrXVI 906549 . A G 1731 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.36;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1764,198,0 chrXVI 906627 . A G 1523 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.693;QD=17.31;ReadPosRankSum=0.551;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1556,177,0 chrXVI 907127 . T C 4996.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=224;Dels=0.00;FS=3.030;HaplotypeScore=14.7027;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.039;QD=22.30;ReadPosRankSum=2.405;SB=-2.736e+03 GT:AD:DP:GQ:PL 1/1:2,220:224:99:4996,561,0 chrXVI 907473 . T C 5468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.198;QD=23.77;ReadPosRankSum=1.717;SB=-2.658e+03 GT:AD:DP:GQ:PL 1/1:1,227:230:99:5468,606,0 chrXVI 907815 . T C 2999 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3032,354,0 chrXVI 908852 . T C 4464.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.070;QD=22.55;ReadPosRankSum=1.662;SB=-2.071e+03 GT:AD:DP:GQ:PL 1/1:1,197:198:99:4464,504,0 chrXVI 908942 . G C 3639.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=19.46;SB=-2.249e+03 GT:AD:DP:GQ:PL 1/1:0,184:187:99:3639,417,0 chrXVI 908949 . A C 3533.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=19.20;SB=-2.233e+03 GT:AD:DP:GQ:PL 1/1:0,184:184:99:3533,411,0 chrXVI 909096 . A G 4335.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=196;Dels=0.00;FS=2.961;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.699;QD=22.12;ReadPosRankSum=2.336;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:2,193:196:99:4335,483,0 chrXVI 909392 . A G 3093 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=11.9443;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.04;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3126,354,0 chrXVI 909597 . C A 1631 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.64;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1664,180,0 chrXVI 909814 . T C 2424 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=24.48;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2457,276,0 chrXVI 909852 . C T 1829 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=22.58;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1862,201,0 chrXVI 909859 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=22.52;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1992,216,0 chrXVI 909889 . T C 2138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=99;Dels=0.00;FS=2.737;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-0.037;QD=21.60;ReadPosRankSum=2.400;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2171,249,0 chrXVI 909952 . T C 3202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.677;DP=144;Dels=0.00;FS=12.317;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.928;QD=22.24;ReadPosRankSum=3.743;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:5,139:144:99:3235,372,0 chrXVI 910009 . C T 2478 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.1733;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=18.77;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2511,273,0 chrXVI 910012 . T C 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=129;Dels=0.00;FS=2.850;HaplotypeScore=5.1079;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=-0.784;QD=18.31;ReadPosRankSum=2.333;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:2,125:129:99:2395,273,0 chrXVI 910104 . T C 2765 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=18.81;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2798,315,0 chrXVI 910111 . C T 2785 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=18.95;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2818,315,0 chrXVI 910123 . G C 2780 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.9188;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=18.91;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2813,312,0 chrXVI 910282 . T C 3590.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.7587;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.76;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,161:165:99:3590,420,0 chrXVI 910322 . T C 3182 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.07;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:0,148:151:99:3215,360,0 chrXVI 910525 . T C 4962.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.284;DP=211;Dels=0.00;FS=5.245;HaplotypeScore=17.5214;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.029;QD=23.52;ReadPosRankSum=3.410;SB=-1.799e+03 GT:AD:DP:GQ:PL 1/1:4,204:211:99:4962,573,0 chrXVI 911238 . A G 2828 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2861,318,0 chrXVI 911554 . C T 3190 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3223,351,0 chrXVI 911904 . C A 2364 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=25.15;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2397,258,0 chrXVI 912387 . C T 4213.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=10.4194;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=21.39;SB=-2.198e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:4213,459,0 chrXVI 912427 . T G 4280.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=192;Dels=0.00;FS=4.615;HaplotypeScore=10.0686;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.970;QD=22.29;ReadPosRankSum=1.714;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:1,190:192:99:4280,480,0 chrXVI 912678 . A G 3482.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.6132;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.76;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3482,390,0 chrXVI 912753 . T C 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=135;Dels=0.00;FS=3.039;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-2.064;QD=19.82;ReadPosRankSum=2.303;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2709,312,0 chrXVI 913446 . A G 2621 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2654,294,0 chrXVI 914142 . A G 2582 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2615,306,0 chrXVI 914217 . T C 3652.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.827;DP=162;Dels=0.00;FS=10.749;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.696;QD=22.54;ReadPosRankSum=4.120;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:6,156:162:99:3652,405,0 chrXVI 914319 . A G 4143.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.51;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4143,462,0 chrXVI 914631 . T C 3553.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=161;Dels=0.00;FS=5.742;HaplotypeScore=15.0027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.681;QD=22.07;ReadPosRankSum=2.956;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:3,158:161:99:3553,402,0 chrXVI 915113 . G A 2705 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2738,303,0 chrXVI 915200 . G C 2975 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.72;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:3008,339,0 chrXVI 915597 . C T 3710.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=10.9058;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.48;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3710,408,0 chrXVI 915879 . T C 3531.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.654;DP=161;Dels=0.00;FS=10.690;HaplotypeScore=14.0959;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.164;QD=21.93;ReadPosRankSum=2.868;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:3,157:161:99:3531,399,0 chrXVI 915929 . C T 4419.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=12.2508;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.51;SB=-2.434e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4419,483,0 chrXVI 916038 . A G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=130;Dels=0.00;FS=5.872;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.163;QD=21.15;ReadPosRankSum=2.869;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2783,315,0 chrXVI 916067 . G A 3034 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.52;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3067,333,0 chrXVI 916830 . A T 3274.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=141;Dels=0.00;FS=3.015;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-1.299;QD=23.22;ReadPosRankSum=2.380;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3274,354,0 chrXVI 916848 . G A 3047 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.76;SB=-1.702e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3080,333,0 chrXVI 916985 . A G 2991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=132;Dels=0.00;FS=2.740;HaplotypeScore=9.6768;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.286;QD=22.66;ReadPosRankSum=2.412;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:3024,345,0 chrXVI 917110 . C T 2342 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=23.66;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2375,264,0 chrXVI 917323 . G C 3329.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.62;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3329,393,0 chrXVI 917338 . G A 3348.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.06;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3348,375,0 chrXVI 917353 . A G 3089 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=18.50;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3122,348,0 chrXVI 917368 . T C 2697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=-1.283;QD=16.65;ReadPosRankSum=1.668;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:2730,312,0 chrXVI 917515 . A G 4432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.054;QD=22.73;ReadPosRankSum=1.679;SB=-2.280e+03 GT:AD:DP:GQ:PL 1/1:1,193:195:99:4432,489,0 chrXVI 918199 . C A 2616 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.98;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2649,291,0 chrXVI 918292 . G A 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.203;DP=133;Dels=0.00;FS=3.464;HaplotypeScore=7.6710;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=1.415;QD=21.02;ReadPosRankSum=0.331;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2828,293,0 chrXVI 918370 . T C 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.634;QD=19.65;ReadPosRankSum=1.708;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2824,321,0 chrXVI 918379 . T C 2877 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.44;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2910,327,0 chrXVI 918448 . T C 3272.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=157;Dels=0.00;FS=2.464;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-0.555;QD=20.84;ReadPosRankSum=2.955;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:3,153:157:99:3272,372,0 chrXVI 918496 . G C 3747.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.8431;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.44;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:3747,429,0 chrXVI 918505 . C T 4078.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=7.2083;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.17;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:4078,441,0 chrXVI 918565 . A G 3312.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.909;QD=20.70;ReadPosRankSum=1.667;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3312,387,0 chrXVI 918772 . G A 3734.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.4362;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.34;SB=-1.822e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3734,411,0 chrXVI 918807 . A G 3603.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=17.8831;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.97;SB=-1.986e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3603,402,0 chrXVI 918946 . C A 3024 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.1106;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.45;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3057,342,0 chrXVI 918999 . T C 2740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=4.237;HaplotypeScore=10.4263;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.719;QD=21.08;ReadPosRankSum=1.705;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2773,312,0 chrXVI 919046 . A G 2391 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.92;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2424,276,0 chrXVI 919300 . A G 2359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=125;Dels=0.00;FS=3.575;HaplotypeScore=5.0025;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=1.000;QD=18.87;ReadPosRankSum=1.394;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2392,273,0 chrXVI 919303 . A T 2386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=3.614;HaplotypeScore=5.7912;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.626;QD=18.21;ReadPosRankSum=1.521;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2419,270,0 chrXVI 919520 . T C 3436.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.53;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3436,402,0 chrXVI 920519 . A C 1498 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.52;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1531,177,0 chrXVI 920832 . G C 4290.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.19;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,180:185:99:4290,483,0 chrXVI 920877 . G A 4851.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=16.7863;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.66;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,202:205:99:4851,555,0 chrXVI 921310 . T A 4090.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-2.382e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4090,444,0 chrXVI 921580 . A G 3952.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.98;SB=-2.160e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3952,447,0 chrXVI 921737 . G A 2796 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=16.84;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:2829,309,0 chrXVI 921990 . C G 3046 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=18.35;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:0,161:166:99:3079,345,0 chrXVI 921998 . G A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.35;SB=-2.178e+03 GT:AD:DP:GQ:PL 1/1:0,175:176:99:3405,375,0 chrXVI 922297 . T C 4370.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=215;Dels=0.00;FS=3.031;HaplotypeScore=16.3434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.651;QD=20.33;ReadPosRankSum=2.392;SB=-2.463e+03 GT:AD:DP:GQ:PL 1/1:2,211:215:99:4370,507,0 chrXVI 922477 . T C 4760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=16.5974;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.023;QD=21.06;ReadPosRankSum=1.670;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:1,224:226:99:4760,552,0 chrXVI 922622 . A C 4427.01 PASS AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=15.0635;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.98;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,210:211:99:4427,495,0 chrXVI 923621 . A G 3308.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.80;MQ0=0;QD=19.57;SB=-2.055e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3308,378,0 chrXVI 923648 . G A 3079 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.4409;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;QD=17.49;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:3112,339,0 chrXVI 923654 . T C 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=182;Dels=0.00;FS=2.946;HaplotypeScore=6.9515;MLEAC=2;MLEAF=1.00;MQ=37.76;MQ0=0;MQRankSum=-1.572;QD=15.85;ReadPosRankSum=2.342;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:2,180:182:99:2917,336,0 chrXVI 923671 . A C 2852 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=3.1151;MLEAC=2;MLEAF=1.00;MQ=37.05;MQ0=0;QD=14.70;SB=-2.271e+03 GT:AD:DP:GQ:PL 1/1:0,194:194:99:2885,327,0 chrXVI 923684 . G C 2647 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=14.01;SB=-2.149e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:2680,300,0 chrXVI 923699 . A G 2513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=184;Dels=0.00;FS=7.266;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;MQRankSum=-1.809;QD=13.66;ReadPosRankSum=2.423;SB=-1.938e+03 GT:AD:DP:GQ:PL 1/1:2,182:184:99:2546,291,0 chrXVI 923733 . T A 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;MQRankSum=1.023;QD=16.34;ReadPosRankSum=1.711;SB=-2.113e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:2762,306,0 chrXVI 923750 . A G 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.328;DP=149;Dels=0.00;FS=9.112;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;MQRankSum=-0.089;QD=17.24;ReadPosRankSum=3.399;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:4,144:149:99:2602,297,0 chrXVI 923772 . T A 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.547;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=1.571;QD=21.48;ReadPosRankSum=1.705;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2804,303,0 chrXVI 923850 . C G 3870.01 PASS AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=21.26;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,180:182:99:3870,441,0 chrXVI 923860 . A C 3979.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;QD=21.39;SB=-1.681e+03 GT:AD:DP:GQ:PL 1/1:0,185:186:99:3979,444,0 chrXVI 923907 . C T 3759.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=20.77;SB=-1.889e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3759,417,0 chrXVI 924011 . C T 322.10 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.739;DP=109;Dels=0.01;FS=0.925;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=1.056;QD=2.96;ReadPosRankSum=-6.126;SB=-1.010e+01 GT:AD:DP:GQ:PL 1/1:88,20:108:19:355,19,0 chrXVI 924024 . A G 2024 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=18.92;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2057,237,0 chrXVI 924063 . A G 2362 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.02;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2395,273,0 chrXVI 924094 . G A 2804 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=22.98;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2837,306,0 chrXVI 924180 . C T 2786 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.02;FS=0.000;HaplotypeScore=9.4069;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.27;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2819,315,0 chrXVI 924280 . A G 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=123;Dels=0.00;FS=10.648;HaplotypeScore=13.6939;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=0.025;QD=20.45;ReadPosRankSum=2.892;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:3,118:123:99:2548,288,0 chrXVI 924404 . G T 2505 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.19;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2538,276,0 chrXVI 924777 . C T 3672.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=11.8543;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.53;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3672,411,0 chrXVI 924816 . C T 3302.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.72;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3302,366,0 chrXVI 924892 . T G 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=158;Dels=0.00;FS=6.331;HaplotypeScore=10.6057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.417;QD=21.09;ReadPosRankSum=2.403;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:2,155:158:99:3332,390,0 chrXVI 925072 . C T 3166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.091;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.346;QD=23.11;ReadPosRankSum=-1.552;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3199,325,0 chrXVI 925112 . T A 3507.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.63;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3507,381,0 chrXVI 925499 . T G 3408.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.67;SB=-1.774e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3408,384,0 chrXVI 925572 . C T 4506.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.97;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:4506,486,0 chrXVI 925734 . C T 2960 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.76;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2993,324,0 chrXVI 925748 . A T 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.786;DP=127;Dels=0.00;FS=6.085;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.516;QD=20.02;ReadPosRankSum=2.881;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2576,285,0 chrXVI 926181 . C T 3691.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.28;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3691,402,0 chrXVI 926272 . G T 3537.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.33;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,171:174:99:3537,390,0 chrXVI 926283 . T C 3130 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.32;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3163,351,0 chrXVI 926351 . T C 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.798;QD=18.67;ReadPosRankSum=1.672;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2199,246,0 chrXVI 926352 . T C 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=117;Dels=0.00;FS=3.022;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-0.894;QD=18.57;ReadPosRankSum=2.408;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2206,246,0 chrXVI 926379 . A C 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=136;Dels=0.00;FS=6.461;HaplotypeScore=10.9502;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-1.630;QD=19.27;ReadPosRankSum=2.189;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:2,130:136:99:2654,303,0 chrXVI 926512 . A G 3674.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.0593;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.40;SB=-1.957e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3674,408,0 chrXVI 926562 . C T 3048 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.93;SB=-1.807e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3081,336,0 chrXVI 926851 . A G 3749.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=24.99;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3749,423,0 chrXVI 927065 . G A 2018 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9311;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=19.22;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2051,219,0 chrXVI 927096 . G A 1695 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=19.26;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1728,189,0 chrXVI 927116 . A G 1699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.89;MQ0=0;MQRankSum=-2.132;QD=18.27;ReadPosRankSum=2.370;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1732,198,0 chrXVI 927120 . C G 1642 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;QD=18.24;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1675,192,0 chrXVI 927142 . T A 1943 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=20.45;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1976,216,0 chrXVI 927175 . A G 2091 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.70;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2124,237,0 chrXVI 927376 . T C 1463 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=14.07;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1496,171,0 chrXVI 927399 . G A 2032 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3003;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=16.79;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2065,231,0 chrXVI 927546 . C A 3424.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.6058;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=22.53;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3424,375,0 chrXVI 927612 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=20.50;SB=-2.094e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3300,360,0 chrXVI 927681 . A T 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=140;Dels=0.00;FS=5.027;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.990;QD=23.50;ReadPosRankSum=1.658;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3290,357,0 chrXVI 927708 . A C 3118 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=19.61;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3151,354,0 chrXVI 927714 . G C 2855 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=17.52;SB=-1.826e+03 GT:AD:DP:GQ:PL 1/1:0,160:163:99:2888,333,0 chrXVI 927723 . T C 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=-0.640;QD=17.48;ReadPosRankSum=1.690;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:2917,333,0 chrXVI 927827 . T G 3295.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=146;Dels=0.00;FS=3.041;HaplotypeScore=6.2346;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.043;QD=22.57;ReadPosRankSum=2.415;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:2,142:146:99:3295,375,0 chrXVI 927881 . T C 3825.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=171;Dels=0.00;FS=4.069;HaplotypeScore=5.9170;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-0.699;QD=22.37;ReadPosRankSum=1.651;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:1,170:171:99:3825,426,0 chrXVI 927907 . A C 3735.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=0.847;QD=20.75;ReadPosRankSum=1.674;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3735,432,0 chrXVI 927952 . A G 4199.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=190;Dels=0.00;FS=4.049;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=1.050;QD=22.10;ReadPosRankSum=1.714;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:1,187:190:99:4199,468,0 chrXVI 927980 . A G 4534.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=190;Dels=0.00;FS=5.084;HaplotypeScore=12.9535;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=1.287;QD=23.86;ReadPosRankSum=1.695;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:1,186:190:99:4534,507,0 chrXVI 928020 . G T 5014.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=11.4041;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.69;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:5014,546,0 chrXVI 928226 . T C 4020.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=216;Dels=0.00;FS=10.630;HaplotypeScore=19.2162;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.340;QD=18.61;ReadPosRankSum=2.415;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:2,211:216:99:4020,468,0 chrXVI 928457 . C T 3770.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=25.82;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3770,402,0 chrXVI 928512 . T G 2958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=141;Dels=0.00;FS=3.019;HaplotypeScore=14.5270;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=2.046;QD=20.98;ReadPosRankSum=2.415;SB=-1.589e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:2991,351,0 chrXVI 928569 . T A 3609.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=3.487;HaplotypeScore=9.5386;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.732;QD=23.44;ReadPosRankSum=1.687;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3609,405,0 chrXVI 928648 . G A 3575.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.4060;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=23.21;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3575,393,0 chrXVI 928675 . T C 3015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=139;Dels=0.00;FS=3.270;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;MQRankSum=0.100;QD=21.69;ReadPosRankSum=1.657;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:3048,342,0 chrXVI 928687 . A G 3006 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=22.43;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3039,339,0 chrXVI 928823 . G A 2558 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=19.83;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2591,279,0 chrXVI 928847 . C T 2262 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.02;FS=0.000;HaplotypeScore=17.8729;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=17.27;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2295,252,0 chrXVI 928877 . T C 1829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=129;Dels=0.00;FS=6.027;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.22;MQ0=0;MQRankSum=-2.149;QD=14.18;ReadPosRankSum=2.946;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:3,126:129:99:1862,210,0 chrXVI 928880 . A G 1869 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=3.7084;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=0;QD=14.16;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:1902,216,0 chrXVI 928973 . C T 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=125;Dels=0.00;FS=6.710;HaplotypeScore=3.7224;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=1.328;QD=21.35;ReadPosRankSum=2.292;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2702,297,0 chrXVI 928974 . T C 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.334;DP=127;Dels=0.00;FS=13.262;HaplotypeScore=4.3699;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.076;QD=20.16;ReadPosRankSum=3.278;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:4,123:127:99:2593,297,0 chrXVI 929313 . G A 2462 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=39.06;MQ0=0;QD=22.80;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2495,273,0 chrXVI 929318 . G A 2307 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=38.18;MQ0=0;QD=22.62;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2340,258,0 chrXVI 929330 . C G 2015 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;QD=22.64;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2048,240,0 chrXVI 929334 . A T 1942 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.76;MQ0=0;QD=23.12;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1975,216,0 chrXVI 929341 . A G 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.88;MQ0=0;MQRankSum=-0.943;QD=21.39;ReadPosRankSum=1.644;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1723,198,0 chrXVI 929418 . A T 1967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.452;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;MQRankSum=0.056;QD=21.15;ReadPosRankSum=1.658;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2000,222,0 chrXVI 929428 . A G 2232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.01;FS=3.653;HaplotypeScore=5.8541;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;MQRankSum=-0.969;QD=20.29;ReadPosRankSum=1.605;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2265,249,0 chrXVI 929492 . A G 1291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=75;Dels=0.01;FS=3.252;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;MQRankSum=-1.077;QD=17.21;ReadPosRankSum=1.685;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1324,159,0 chrXVI 929522 . C T 834 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.24;MQ0=0;QD=16.68;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:96:867,96,0 chrXVI 929529 . C A 711 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.66;MQ0=0;QD=16.53;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:87:744,87,0 chrXVI 929551 . T C 469 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;QD=10.20;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:60:502,60,0 chrXVI 929556 . C T 588 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=0;QD=11.09;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:72:621,72,0 chrXVI 929574 . C T 798 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=11.40;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:93:831,93,0 chrXVI 929580 . C T 841 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.21;MQ0=0;QD=11.52;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:874,99,0 chrXVI 929586 . T C 915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;MQRankSum=-1.320;QD=10.89;ReadPosRankSum=1.691;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:948,105,0 chrXVI 929606 . A T 1566 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;QD=14.11;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1599,183,0 chrXVI 929678 . C T 2039 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;QD=15.81;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2072,228,0 chrXVI 929679 . C T 2049 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;QD=15.88;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2082,228,0 chrXVI 929692 . C A 1313 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.65;MQ0=0;QD=11.62;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1346,153,0 chrXVI 929716 . T C 857 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=0;QD=9.32;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:890,102,0 chrXVI 929721 . A T 789 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=148.7180;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=9.07;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:90:822,90,0 chrXVI 929744 . C T 555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;MQRankSum=-0.755;QD=7.12;ReadPosRankSum=1.688;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:66:588,66,0 chrXVI 929748 . T C 559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=0;MQRankSum=-1.808;QD=6.65;ReadPosRankSum=2.507;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:3,81:84:69:592,69,0 chrXVI 929755 . T C 879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=97;Dels=0.00;FS=2.561;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;MQRankSum=-2.782;QD=9.06;ReadPosRankSum=2.365;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:3,94:97:99:912,108,0 chrXVI 929769 . C T 1429 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.0248;MLEAC=2;MLEAF=1.00;MQ=35.56;MQ0=0;QD=12.32;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1462,168,0 chrXVI 929903 . C T 4485.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.01;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=34.92;MQ0=0;QD=24.11;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,182:184:99:4485,489,0 chrXVI 929939 . C G 4129.01 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=0;QD=23.59;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,170:175:99:4129,474,0 chrXVI 930017 . A T 2835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;MQRankSum=-0.719;QD=21.81;ReadPosRankSum=1.705;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2868,312,0 chrXVI 930048 . T C 2990 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;QD=18.12;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3023,333,0 chrXVI 930071 . C T 2693 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.48;MQ0=0;QD=15.66;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:2726,297,0 chrXVI 930128 . G A 2122 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=13.52;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2155,237,0 chrXVI 930148 . A T 2039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.106;DP=143;Dels=0.00;FS=2.693;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.33;MQ0=0;MQRankSum=0.335;QD=14.26;ReadPosRankSum=2.415;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:2,141:143:99:2072,228,0 chrXVI 930170 . A T 2122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;MQRankSum=0.646;QD=15.84;ReadPosRankSum=1.706;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2155,240,0 chrXVI 930212 . G A 2751 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=0;QD=20.23;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2784,306,0 chrXVI 930235 . A T 2416 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;QD=18.30;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2449,279,0 chrXVI 930236 . G T 2373 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;QD=17.84;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2406,276,0 chrXVI 930248 . C G 2191 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=16.47;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2224,267,0 chrXVI 930299 . A T 2945 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.2876;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=21.34;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2978,333,0 chrXVI 930341 . A G 4028.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=175;Dels=0.00;FS=5.504;HaplotypeScore=12.1813;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=1.414;QD=23.02;ReadPosRankSum=1.712;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,173:175:99:4028,476,0 chrXVI 930431 . T C 2902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=151;Dels=0.00;FS=9.297;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;MQRankSum=-0.242;QD=19.22;ReadPosRankSum=2.900;SB=-1.797e+03 GT:AD:DP:GQ:PL 1/1:3,147:151:99:2935,330,0 chrXVI 930436 . T C 3005 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.3082;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=18.55;SB=-1.927e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3038,354,0 chrXVI 930549 . A T 4960.01 PASS AC=2;AF=1.00;AN=2;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.04;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:0,225:225:99:4960,543,0 chrXVI 930581 . A T 4320.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=20.19;SB=-2.623e+03 GT:AD:DP:GQ:PL 1/1:0,214:214:99:4320,480,0 chrXVI 930732 . T C 4118.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.75;SB=-2.216e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:4118,471,0 chrXVI 930801 . C T 3551.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=19.73;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,178:180:99:3551,411,0 chrXVI 930805 . T C 3758.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=182;Dels=0.00;FS=4.966;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=0.723;QD=20.65;ReadPosRankSum=1.656;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3758,417,0 chrXVI 930863 . T C 3584.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=178;Dels=0.00;FS=5.428;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.915;QD=20.13;ReadPosRankSum=1.654;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3584,399,0 chrXVI 930912 . C T 3198 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.77;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3231,351,0 chrXVI 930946 . A T 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=122;Dels=0.00;FS=3.004;HaplotypeScore=15.0747;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-0.857;QD=20.35;ReadPosRankSum=2.349;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2516,282,0 chrXVI 930978 . A G 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.292;DP=118;Dels=0.01;FS=8.830;HaplotypeScore=3.9109;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=-1.477;QD=19.20;ReadPosRankSum=3.322;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:4,113:117:99:2299,261,0 chrXVI 930986 . G A 2318 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=20.16;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2351,261,0 chrXVI 931061 . G C 2503 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.69;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,117:121:99:2536,282,0 chrXVI 931077 . T C 2699 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.6917;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=21.77;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2732,312,0 chrXVI 931141 . T C 2242 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=17.94;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2275,264,0 chrXVI 931146 . C A 2351 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=18.22;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2384,258,0 chrXVI 931153 . A G 2115 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=16.40;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2148,246,0 chrXVI 931193 . T G 2128 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.0227;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=15.76;SB=-1.629e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2161,255,0 chrXVI 931213 . T C 1815 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=14.64;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:1848,213,0 chrXVI 931268 . T C 2994 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.2775;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=18.71;SB=-1.992e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3027,345,0 chrXVI 931293 . T C 3869.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.86;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,174:177:99:3869,444,0 chrXVI 931361 . C G 5089.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=24.00;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,210:212:99:5089,582,0 chrXVI 931462 . G A 5574.01 PASS AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=10.5549;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.45;SB=-2.275e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:5574,603,0 chrXVI 931585 . G A 5646.01 PASS AC=2;AF=1.00;AN=2;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=24.13;SB=-1.734e+03 GT:AD:DP:GQ:PL 1/1:0,234:234:99:5646,615,0 chrXVI 931814 . G A 2821 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.21;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2854,324,0 chrXVI 931903 . T C 3362.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=12.5388;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.862e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3362,378,0 chrXVI 931948 . C T 3350.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3350,363,0 chrXVI 932030 . T A 3552.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.16;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3552,381,0 chrXVI 932310 . T C 4281.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=21.09;SB=-2.380e+03 GT:AD:DP:GQ:PL 1/1:0,201:203:99:4281,492,0 chrXVI 932313 . G C 4232.01 PASS AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=20.75;SB=-2.297e+03 GT:AD:DP:GQ:PL 1/1:0,202:204:99:4232,477,0 chrXVI 932448 . C T 5139.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=13.0090;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=23.68;SB=-2.489e+03 GT:AD:DP:GQ:PL 1/1:0,216:217:99:5139,561,0 chrXVI 932535 . T G 3762.01 SnpCluster AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.7485;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=17.75;SB=-2.694e+03 GT:AD:DP:GQ:PL 1/1:0,208:211:99:3762,432,0 chrXVI 932536 . G C 3610.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.9864;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;MQRankSum=-1.005;QD=17.52;ReadPosRankSum=1.648;SB=-2.531e+03 GT:AD:DP:GQ:PL 1/1:1,204:206:99:3610,431,0 chrXVI 932537 . A G 3585.01 SnpCluster AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=3.1977;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=17.40;SB=-2.447e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:3585,428,0 chrXVI 932542 . A G 3873.01 SnpCluster AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=4.1037;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=17.45;SB=-2.532e+03 GT:AD:DP:GQ:PL 1/1:0,221:222:99:3873,453,0 chrXVI 932662 . A G 3459.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=13.7160;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.233;QD=19.88;ReadPosRankSum=2.407;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3459,390,0 chrXVI 932770 . A C 2586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.171;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=0.880;QD=18.34;ReadPosRankSum=2.380;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2619,309,0 chrXVI 932855 . C T 1843 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.6258;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=20.71;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1876,204,0 chrXVI 932882 . C A 1704 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.30;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1737,189,0 chrXVI 933153 . A G 3406.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;MQRankSum=-0.044;QD=21.83;ReadPosRankSum=1.665;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:3406,387,0 chrXVI 933174 . G C 3003 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=137.5253;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=19.01;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3036,336,0 chrXVI 933227 . A T 2759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=144;Dels=0.00;FS=3.027;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=-0.303;QD=19.16;ReadPosRankSum=2.415;SB=-1.730e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2792,309,0 chrXVI 933312 . A G 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.4839;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=0.426;QD=18.85;ReadPosRankSum=1.705;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2483,282,0 chrXVI 933316 . C T 2483 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=19.40;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2516,279,0 chrXVI 933358 . G A 2569 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.4334;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=19.76;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2602,282,0 chrXVI 933378 . T C 2430 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.3480;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=18.69;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2463,276,0 chrXVI 933425 . A G 3039 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.51;SB=-1.638e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3072,345,0 chrXVI 933484 . G T 3046 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.98;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3079,336,0 chrXVI 933594 . A G 2737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=1.233;QD=23.00;ReadPosRankSum=1.615;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2770,309,0 chrXVI 933677 . T C 3038 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.02;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3071,342,0 chrXVI 933712 . T G 3115 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.42;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3148,354,0 chrXVI 933773 . C A 2885 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.76;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2918,318,0 chrXVI 934582 . C T 2266 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.22;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2299,252,0 chrXVI 934801 . G A 3469.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.26;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3469,375,0 chrXVI 934877 . T C 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=1.044;QD=18.50;ReadPosRankSum=1.643;SB=-1.931e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:2956,327,0 chrXVI 934884 . C T 3132 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.6545;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=18.64;SB=-2.043e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3165,348,0 chrXVI 935125 . A G 3380.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.255;DP=146;Dels=0.00;FS=8.970;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-0.318;QD=23.15;ReadPosRankSum=3.387;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:4,142:146:99:3380,381,0 chrXVI 935140 . C G 2950 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=21.07;SB=-1.751e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2983,336,0 chrXVI 935143 . C T 2893 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=21.27;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2926,324,0 chrXVI 935215 . C A 2836 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.40;SB=-1.697e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2869,309,0 chrXVI 935251 . A T 3540.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3540,390,0 chrXVI 935320 . T G 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.567;QD=21.56;ReadPosRankSum=1.709;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3202,360,0 chrXVI 935869 . A G 2914 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.59;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,125:129:99:2947,345,0 chrXVI 936081 . C T 2032 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=18.99;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2065,222,0 chrXVI 936084 . A G 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=4.3627;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-1.144;QD=18.36;ReadPosRankSum=1.699;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1997,225,0 chrXVI 936303 . C T 3125 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.7076;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=24.61;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3158,342,0 chrXVI 936393 . G C 2612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.235;QD=22.14;ReadPosRankSum=-0.059;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2645,303,0 chrXVI 936431 . G A 2415 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.16;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2448,273,0 chrXVI 936638 . G C 2428 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.81;MQ0=0;QD=23.57;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2461,276,0 chrXVI 936758 . T C 1949 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.66;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1982,225,0 chrXVI 936797 . C G 1812 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.83;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1845,216,0 chrXVI 936816 . G A 2031 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.89;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2064,222,0 chrXVI 936922 . G A 3137 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.32;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3170,345,0 chrXVI 937037 . T C 2598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.031;QD=22.02;ReadPosRankSum=2.387;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2631,300,0 chrXVI 937087 . A G 2438 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.58;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2471,279,0 chrXVI 937101 . G C 2496 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.97;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2529,288,0 chrXVI 937324 . T C 3204.99 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=22.26;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3238,369,0 chrXVI 937373 . A G 1946 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=18.71;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1979,222,0 chrXVI 937470 . A C 3716.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6853;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.08;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3716,426,0 chrXVI 937542 . G A 4007.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=22.51;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4007,438,0 chrXVI 937701 . A T 4116.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=181;Dels=0.01;FS=3.035;HaplotypeScore=20.2969;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.766;QD=22.74;ReadPosRankSum=2.394;SB=-2.244e+03 GT:AD:DP:GQ:PL 1/1:2,177:179:99:4116,459,0 chrXVI 937774 . G A 3531.01 PASS AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=182.1247;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=17.92;SB=-1.914e+03 GT:AD:DP:GQ:PL 1/1:0,197:197:99:3531,390,0 chrXVI 937790 . A G 3706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=175.2790;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;MQRankSum=-0.557;QD=17.99;ReadPosRankSum=2.402;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:2,203:206:99:3706,432,0 chrXVI 937822 . G T 3964.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=20.22;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,195:196:99:3964,432,0 chrXVI 937854 . G T 3745.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=20.46;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:0,182:183:99:3745,408,0 chrXVI 938071 . T G 2653 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.27;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2686,300,0 chrXVI 938107 . A T 2556 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2589,288,0 chrXVI 938304 . C T 3626.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.70;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3626,399,0 chrXVI 938410 . G C 4134.01 PASS AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=18.1392;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.11;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,183:187:99:4134,465,0 chrXVI 938531 . G C 5180.01 PASS AC=2;AF=1.00;AN=2;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=15.3704;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.92;SB=-2.601e+03 GT:AD:DP:GQ:PL 1/1:0,222:226:99:5180,594,0 chrXVI 938716 . C T 4266.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=20.51;SB=-2.619e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:4266,471,0 chrXVI 938727 . A G 3822.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.967;DP=210;Dels=0.00;FS=5.987;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;MQRankSum=-1.206;QD=18.20;ReadPosRankSum=2.938;SB=-2.626e+03 GT:AD:DP:GQ:PL 1/1:3,207:210:99:3822,432,0 chrXVI 938728 . G C 3852.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=18.52;SB=-2.488e+03 GT:AD:DP:GQ:PL 1/1:0,206:208:99:3852,432,0 chrXVI 938739 . G A 3782.01 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=17.76;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:0,213:213:99:3782,423,0 chrXVI 939003 . G A 1431 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=20.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1464,165,0 chrXVI 939054 . G A 1820 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1853,198,0 chrXVI 939137 . G A 348 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.89;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:42:381,42,0 chrXVI 939206 . T C 617 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.438;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=27.4943;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;MQRankSum=-0.111;QD=9.49;ReadPosRankSum=1.659;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:2,46:65:75:650,75,0 chrXVI 939248 . A T 1719 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1752,192,0 chrXVI 939489 . G C 3008 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.6507;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.74;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:3041,348,0 chrXVI 939501 . A T 3130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=147;Dels=0.00;FS=6.007;HaplotypeScore=7.3176;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=0.651;QD=21.29;ReadPosRankSum=2.898;SB=-1.719e+03 GT:AD:DP:GQ:PL 1/1:3,144:147:99:3163,348,0 chrXVI 939609 . A G 2690 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.61;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2723,300,0 chrXVI 939714 . T A 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=110;Dels=0.00;FS=4.079;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=1.165;QD=22.77;ReadPosRankSum=1.701;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2538,282,0 chrXVI 939734 . G A 2409 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=22.10;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2442,267,0 chrXVI 939747 . T C 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=113;Dels=0.00;FS=4.196;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=0.107;QD=19.71;ReadPosRankSum=1.671;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2260,267,0 chrXVI 939830 . A G 2773 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.99;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2806,327,0 chrXVI 939832 . A T 2836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=146;Dels=0.00;FS=8.251;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-0.606;QD=19.42;ReadPosRankSum=2.398;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2869,321,0 chrXVI 939982 . A G 3375.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=3.786;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=0.472;QD=20.45;ReadPosRankSum=1.711;SB=-1.792e+03 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3375,393,0 chrXVI 939993 . G T 3463.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=19.24;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:3463,387,0 chrXVI 939999 . G A 3608.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=19.72;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3608,390,0 chrXVI 940653 . A G 2662 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2695,303,0 chrXVI 941049 . G A 4349.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.43;SB=-1.988e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4349,468,0 chrXVI 941176 . A G 2924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=133;Dels=0.00;FS=3.001;HaplotypeScore=9.2744;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=-1.821;QD=21.98;ReadPosRankSum=2.339;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2957,336,0 chrXVI 941337 . G A 2915 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=22.08;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2948,318,0 chrXVI 941366 . C T 2574 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.5827;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=19.21;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2607,279,0 chrXVI 941559 . G A 5687.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.621;DP=239;Dels=0.00;FS=4.663;HaplotypeScore=19.2544;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-1.001;QD=23.80;ReadPosRankSum=-0.329;SB=-2.116e+03 GT:AD:DP:GQ:PL 1/1:1,237:239:99:5687,630,0 chrXVI 941642 . C T 5749.01 PASS AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=15.1149;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.85;SB=-2.364e+03 GT:AD:DP:GQ:PL 1/1:0,240:241:99:5749,621,0 chrXVI 941677 . C T 6527.01 PASS AC=2;AF=1.00;AN=2;DP=276;Dels=0.00;FS=0.000;HaplotypeScore=18.7753;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.65;SB=-2.911e+03 GT:AD:DP:GQ:PL 1/1:0,276:276:99:6527,711,0 chrXVI 941772 . A T 6580.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=20.1883;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-1.659;QD=22.85;ReadPosRankSum=1.646;SB=-3.296e+03 GT:AD:DP:GQ:PL 1/1:1,287:288:99:6580,729,0 chrXVI 941801 . T C 6057.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=265;Dels=0.00;FS=3.424;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=1.312;QD=22.86;ReadPosRankSum=1.706;SB=-2.983e+03 GT:AD:DP:GQ:PL 1/1:1,264:265:99:6057,675,0 chrXVI 941879 . A G 6471.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=284;Dels=0.00;FS=2.917;HaplotypeScore=15.0762;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-2.103;QD=22.79;ReadPosRankSum=2.424;SB=-3.014e+03 GT:AD:DP:GQ:PL 1/1:2,281:284:99:6471,732,0 chrXVI 942010 . G C 4676.01 PASS AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.33;SB=-2.423e+03 GT:AD:DP:GQ:PL 1/1:0,228:230:99:4676,519,0 chrXVI 942021 . T C 4876.01 PASS AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.75;SB=-2.674e+03 GT:AD:DP:GQ:PL 1/1:0,235:235:99:4876,555,0 chrXVI 942078 . T A 4688.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=220;Dels=0.00;FS=3.693;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=0.945;QD=21.31;ReadPosRankSum=1.685;SB=-2.636e+03 GT:AD:DP:GQ:PL 1/1:1,219:220:99:4688,510,0 chrXVI 942107 . G T 3885.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=22.59;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3885,441,0 chrXVI 942124 . A T 4202.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;MQRankSum=-0.937;QD=22.96;ReadPosRankSum=1.713;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:4202,465,0 chrXVI 942158 . T C 3569.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=182;Dels=0.00;FS=4.064;HaplotypeScore=15.8516;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;MQRankSum=0.584;QD=19.61;ReadPosRankSum=1.636;SB=-1.655e+03 GT:AD:DP:GQ:PL 1/1:1,180:182:99:3569,425,0 chrXVI 942173 . G A 3739.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=21.99;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:1,169:170:99:3739,414,0 chrXVI 942206 . T C 4205.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=22.25;SB=-1.983e+03 GT:AD:DP:GQ:PL 1/1:1,185:189:99:4205,486,0 chrXVI 942307 . G A 2049 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=21.12;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2082,251,0 chrXVI 942311 . A G 1979 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;QD=21.28;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2012,248,0 chrXVI 942315 . A G 1941 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=20.22;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1974,245,0 chrXVI 942317 . G A 2027 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.19;MQ0=0;QD=20.47;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2060,248,0 chrXVI 942354 . G T 1444 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=65.5777;MLEAC=2;MLEAF=1.00;MQ=36.51;MQ0=0;QD=19.25;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1477,171,0 chrXVI 942427 . G A 1036 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.468;DP=83;Dels=0.00;FS=6.931;HaplotypeScore=64.9753;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=9;MQRankSum=1.311;QD=12.48;ReadPosRankSum=0.000;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1069,120,0 chrXVI 942440 . G A 1010 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.601;DP=82;Dels=0.00;FS=34.965;HaplotypeScore=58.7150;MLEAC=2;MLEAF=1.00;MQ=24.60;MQ0=9;MQRankSum=1.135;QD=12.32;ReadPosRankSum=2.199;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:6,76:82:99:1043,117,0 chrXVI 942453 . T A 911 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.117;DP=75;Dels=0.00;FS=40.499;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=23.76;MQ0=8;MQRankSum=1.507;QD=12.15;ReadPosRankSum=0.564;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:13,62:75:99:944,108,0 chrXVI 942466 . G T 445 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=11.3599;MLEAC=2;MLEAF=1.00;MQ=24.02;MQ0=0;QD=8.73;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:60:478,60,0 chrXVI 942467 . T C 432 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.168;DP=51;Dels=0.00;FS=15.894;HaplotypeScore=11.3599;MLEAC=2;MLEAF=1.00;MQ=24.02;MQ0=0;MQRankSum=-1.052;QD=8.47;ReadPosRankSum=1.174;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:6,43:51:60:465,60,0 chrXVI 942468 . G T 432 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.04;FS=0.000;HaplotypeScore=13.1917;MLEAC=2;MLEAF=1.00;MQ=24.02;MQ0=0;QD=8.47;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:60:465,60,0 chrXVI 942471 . T A 546 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=9.5282;MLEAC=2;MLEAF=1.00;MQ=24.02;MQ0=0;QD=10.71;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:69:579,69,0 chrXVI 942476 . T C 508 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.967;DP=51;Dels=0.00;FS=37.779;HaplotypeScore=10.3949;MLEAC=2;MLEAF=1.00;MQ=24.02;MQ0=0;MQRankSum=0.804;QD=9.96;ReadPosRankSum=-0.716;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:6,45:51:69:541,69,0 chrXVI 942479 . C A 542 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.446;DP=52;Dels=0.00;FS=38.312;HaplotypeScore=2.6984;MLEAC=2;MLEAF=1.00;MQ=23.90;MQ0=0;MQRankSum=1.189;QD=10.42;ReadPosRankSum=-0.473;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:6,46:52:69:575,69,0 chrXVI 942488 . G A 432 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.6984;MLEAC=2;MLEAF=1.00;MQ=23.93;MQ0=0;QD=10.05;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:57:465,57,0 chrXVI 942497 . G A 348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.311;DP=37;Dels=0.00;FS=32.380;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.32;MQ0=0;MQRankSum=1.844;QD=9.41;ReadPosRankSum=1.222;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:5,32:37:48:381,48,0 chrXVI 942509 . T G 215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.627;DP=25;Dels=0.00;FS=18.177;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.76;MQ0=0;MQRankSum=2.718;QD=8.60;ReadPosRankSum=1.882;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:3,22:25:33:248,33,0 chrXVI 942550 . G A 49.97 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.9494;MLEAC=2;MLEAF=1.00;MQ=19.70;MQ0=3;QD=2.50;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,11:20:9:82,9,0 chrXVI 942589 . G A 1342 filter AC=2;AF=1.00;AN=2;DP=136;Dels=0.01;FS=0.000;HaplotypeScore=11.5075;MLEAC=2;MLEAF=1.00;MQ=20.55;MQ0=10;QD=9.87;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,131:135:99:1375,170,0 chrXVI 942621 . T C 378.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.499;DP=148;Dels=0.00;FS=26.602;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=21.36;MQ0=9;MQRankSum=0.918;QD=2.55;ReadPosRankSum=6.818;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,33:148:99:408,0,1325 chrXVI 942658 . T C 468.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.810;DP=87;Dels=0.00;FS=15.136;HaplotypeScore=44.7986;MLEAC=1;MLEAF=0.500;MQ=22.73;MQ0=5;MQRankSum=-0.327;QD=5.38;ReadPosRankSum=-1.352;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,32:87:99:498,0,461 chrXVI 942659 . T A 63.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;DP=85;Dels=0.00;FS=4.639;HaplotypeScore=47.4760;MLEAC=1;MLEAF=0.500;MQ=22.72;MQ0=5;MQRankSum=4.116;QD=0.74;ReadPosRankSum=-3.456;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:73,12:85:93:93,0,1105 chrXVI 942679 . T A 339.20 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.565;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.224;QD=19.95;ReadPosRankSum=2.162;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:2,15:17:2:368,0,2 chrXVI 942687 . A G 198.01 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.80;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:27:231,27,0 chrXVI 942736 . G T 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.526;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=12.6542;MLEAC=1;MLEAF=0.500;MQ=18.57;MQ0=0;MQRankSum=0.938;QD=1.34;ReadPosRankSum=-0.072;SB=-6.953e-03 GT:AD:DP:GQ:PL 0/1:12,3:15:37:50,0,37 chrXVI 942741 . A C,T 51.11 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.164;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=1,1;MLEAF=0.500,0.500;MQ=18.48;MQ0=0;MQRankSum=2.646;QD=3.19;ReadPosRankSum=-1.164;SB=-1.057e-01 GT:AD:DP:GQ:PL 1/2:7,5,4:16:46:111,55,46,56,0,50 chrXVI 942745 . A C 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=19.4679;MLEAC=1;MLEAF=0.500;MQ=18.39;MQ0=0;MQRankSum=1.529;QD=0.67;ReadPosRankSum=0.170;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:13,4:17:41:41,0,69 chrXVI 942759 . A G,T 77.40 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.164;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=8.7788;MLEAC=1,1;MLEAF=0.500,0.500;MQ=18.66;MQ0=0;MQRankSum=-1.625;QD=1.58;ReadPosRankSum=-2.866;SB=-4.018e-01 GT:AD:DP:GQ:PL 1/2:4,11,34:49:41:137,48,89,41,0,85 chrXVI 942767 . G A 308 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.531;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=30.3094;MLEAC=2;MLEAF=1.00;MQ=19.26;MQ0=0;MQRankSum=4.259;QD=5.40;ReadPosRankSum=-0.072;SB=0.047 GT:AD:DP:GQ:PL 1/1:27,30:57:42:341,42,0 chrXVI 942773 . A T 305 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=27.2380;MLEAC=2;MLEAF=1.00;MQ=19.26;MQ0=0;QD=5.35;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:42:338,42,0 chrXVI 942778 . C T 279 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=25.1556;MLEAC=2;MLEAF=1.00;MQ=19.26;MQ0=0;QD=4.89;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:39:312,39,0 chrXVI 942782 . G A 192.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=26.0497;MLEAC=1;MLEAF=0.500;MQ=19.35;MQ0=0;MQRankSum=4.331;QD=2.59;ReadPosRankSum=7.340;SB=-6.523e-03 GT:AD:DP:GQ:PL 0/1:39,35:74:58:222,0,58 chrXVI 942788 . A G 163.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.228;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=26.0965;MLEAC=1;MLEAF=0.500;MQ=21.94;MQ0=0;MQRankSum=0.247;QD=3.02;ReadPosRankSum=3.840;SB=-1.197e-02 GT:AD:DP:GQ:PL 0/1:15,38:54:26:193,0,26